Merge the tomography branch into develop

.gitignore

@@ -173,6 +173,8 @@ cosmo_inference/cosmosis_config/cosmosis_pipeline_glass_mock_0*.ini
 cosmo_inference/cosmosis_config/cosmosis_pipeline_glass_mock_v0*.ini
 cosmo_inference/cosmosis_config/glass_mocks_v*
 
+config/glass_mock/test_data/results
+
 # Regenerable catalog-paper plots: the paper TeX lives in the separate docs/
 # repo, so these are script/notebook outputs, not LaTeX-tracked figures.
 papers/catalog/plots/*.pdf
@@ -195,6 +197,8 @@ papers/cosmo_val/logs/
 
 # Ignore scratch notebooks
 scratch/*/*.ipynb
+scratch/guerrini/work_notebooks
+scratch/guerrini/launch_scripts
 
 # Snakemake run state
 .snakemake/

config/cosmo_val/cosmo_gaussian_sims.yaml

@@ -0,0 +1,14 @@
+# --- Cosmological parameters (CAMB) ---
+h: 0.6766
+Omega_m: 0.30966
+Omega_b: 0.04897
+ns: 0.9665
+sig8: 0.8102
+mnu: 0.06
+extra_params:
+  camb:
+    nonlinear: True
+    halofit_version: "mead2020_feedback"
+    HMCode_logT_AGN: 7.8
+    kmax: 20.0
+    kmax_extrapolate: 500

config/glass_mock/config_glass_mock.yaml

@@ -0,0 +1,41 @@
+# Config file to generate a GLASS mock.
+# Example config file, uncomment and modify the inplace value if needed.
+
+# To run this configuration run the script `make_glass_sim.py`
+# Options:
+# -s, --seed: Random seed
+# -N, --number: Mock Number for labelling
+# -t, --test: Run in test mode
+# -cb, --camb: get Camb C_ell
+# -c, --config: Path to the configuration file to generate the simulation (Required)
+
+# --- Cosmological parameters (CAMB) ---
+#h: 0.6766
+#Om: 0.30966
+#Ob: 0.04897
+#ns: 0.9665
+#sigma8: 0.8102
+#mnu: 0.06
+#log_T_AGN: 7.8
+#As_init: 2.1e-9 #seed As before sigma8 rescaling
+#kmax: 20.0
+
+# --- Resolution ---
+nside: 1024
+dx: 120.0
+zmax: 3.0
+
+# --- galaxy population (downstream of map generation) ---
+nbins: 6
+n_arcmin2: [1, 1.02, 1.05, 0.85, 0.9, 1.2]
+sigma_e: 0.2684
+bias: 1.2
+phz_sigma_0: 0.03
+#ia_bias: null
+
+# --- Runtime options ---
+limber: True
+mask_path: /n09data/guerrini/glass_mock_v1.4.6_rerun/mask_nside4096.fits
+nz_path: /home/guerrini/sp_validation_cosmostat/config/glass_mock/test_data/redshift_distribution_tomo.txt
+output_path: /n09data/guerrini/glass_mock_test/
+output_prefix: tomo_test_2

config/glass_mock/config_glass_mock_test.yaml

@@ -0,0 +1,42 @@
+# Config file to generate a GLASS mock.
+# Example config file, uncomment and modify the inplace value if needed.
+
+# To run this configuration run the script `make_glass_sim.py`
+# Options:
+# -s, --seed: Random seed
+# -N, --number: Mock Number for labelling
+# -t, --test: Run in test mode
+# -cb, --camb: get Camb C_ell
+# -v, --validation: Run some validation checks
+# -c, --config: Path to the configuration file to generate the simulation (Required)
+
+# --- Cosmological parameters (CAMB) ---
+#h: 0.7
+#Om: 0.30966
+#Ob: 0.04897
+#ns: 0.9665
+#sigma8: 0.8102
+#mnu: 0.06
+#log_T_AGN: 7.8
+#As_init: 2.1e-9 #seed As before sigma8 rescaling
+#kmax: 20.0
+
+# --- Resolution ---
+nside: 32
+dx: 200.0
+zmax: 3
+
+# --- galaxy population (downstream of map generation) ---
+nbins: 6
+n_arcmin2: [4.0, 3.8, 4.2, 3.95, 4.05, 4.0] # number density in arcmin^-2. Input can be a float or a list (a number density for each bin)
+sigma_e: 0.2684 # intrinsic ellipticity dispersion. Input can be a float or a list (a shape noise for each bin)
+bias: 1.2 # galaxy bias. Input can be a float or a list (a galaxy bias for each bin)
+phz_sigma_0: 0.03
+#ia_bias: null # Intrinsic alignment amplitude. Warning: this feature has not been robustly tested.
+
+# --- Runtime options ---
+limber: True
+mask_path: /n09data/guerrini/glass_mock_v1.4.6_rerun/mask_nside4096.fits
+nz_path: /home/guerrini/sp_validation_cosmostat/config/glass_mock/test_data/redshift_distribution_tomo.txt
+output_path: /n09data/guerrini/glass_mock_test/
+output_prefix: unions