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Merge develop into the tomography branch - #394

Merged

cailmdaley merged 91 commits into

feature/sp_validation-extend-to-tomographyfrom

merge/develop-into-tomo

Oct 5, 2026

Merged

Merge develop into the tomography branch#394
cailmdaley merged 91 commits into
feature/sp_validation-extend-to-tomographyfrom
merge/develop-into-tomo

Commits on Aug 24, 2026
- chore: add Renovate config (ported from shapepipe) (#308)
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  7c5c8a2
- Remove vestigial FHP/MK NOSHEAR←1P Tpsf substitution (#257) (#267)
  
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Commits on Aug 29, 2026
- Track the Smokescreen fork's main; lock at b457c99 (#311)
  
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Commits on Aug 31, 2026
- Stop tracking CI lint-gate scratch files
  
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Commits on Sep 5, 2026
- PhotoPipe + ShapePipe (#310)
  
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- cat_config: drop duplicate SP_v1.4.6 / SP_v1.3.6 keys, repair the survivor, guard against recurrence (#320)
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  556e56a
Commits on Sep 8, 2026
- Improvements to snakemake containerization (#309)
  
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  7dd1984
- Update actions/checkout action to v7 (#325)
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  5c03d04
- Update actions/github-script action to v9 (#326)
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  0fa080d
- Update actions/upload-artifact action to v7 (#327)
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  b9955f3
- Update astral-sh/setup-uv action to v10 (#328)
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  8293f9a
- Update docker/build-push-action action to v7 (#330)
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  11f92d1
- Update docker/login-action action to v4 (#331)
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  f74f8e1
- Update docker/metadata-action action to v6 (#332)
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  66173c5
- Update docker/setup-buildx-action action to v4 (#333)
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- ci: queue gh-pages deploys instead of racing (#335)
  
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Commits on Sep 9, 2026
- Fix fiducial pure-EB window resolution (#323)
  
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  5fbed60
- Add TeX distribution to container image (#338)
  
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  6de9a92
- Container: TinyTeX (pinned TeX Live 2025) instead of apt texlive
  
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  88fa75b
- Container: trim the TinyTeX comment
  
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- Merge pull request #341 from CosmoStat/feat/container-tinytex
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Commits on Sep 16, 2026
Commits on Sep 21, 2026
- Update docker/build-push-action digest to c3c9e26 (#347)
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  120e86c
- Update docker/setup-buildx-action digest to f87e599 (#348)
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  2c561de
Commits on Sep 25, 2026
- chore: remove dead scripts and fix stale doc paths
  
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  efb32b2
- Work b_modes from plain arrays instead of TreeCorr correlations
  
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  0f2f2c9
- Unpack cs_util's per-pair get_theo_xi in the pure-E/B MC covariance
  
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  d6d6f24
- Merge pull request #352 from CosmoStat/chore/remove-dead-scripts
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  26b0079
- Merge pull request #351 from CosmoStat/refactor/bmodes-arrays-api
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  09616f0
- cosmo_val: explicit catalogue config, forwarded constructor settings, patch_number from cat_config (#350)
  
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  3dc5eaf
- cosmo_val + Snakemake migration to the SACC writers (PRD #241 row 4) (#251)
  
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  4c16c28
- fix(renovate): automerge pinned action digests (#353)
  
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Commits on Sep 28, 2026
- uv.lock: cs_util develop@a52280f, which restores FootprintPlotter.plot_area
  
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- Dockerfile: sfmath in the image's TeX, for sans-serif usetex figures
  
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  2ddeb67
- Update all non-major dependencies (#355)
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  f9a9a9d
- papers/bmodes: drop the claims layer, the ecut and Moriond rules, and dead scripts (#358)
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  11b9322
- Dockerfile: build from shapepipe:develop (#360)
  
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  6c2f03a
- Write metacal flag columns as int32; reduce_mem never narrows integers (#354)
  
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  0c0d834
- ci(docs): install from uv.lock, not a fresh PyPI resolve (#365)
  
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  fdb7c5e
- Remove spread-model leftovers (#364)
  
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- workflow: parity-checked launches, one output root, one integration grid, machine-independent ξ± (#357)
  
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  2832186
- Scrub the legacy n(z) A/B/C blind: an n(z) is a catalogue entry's (#359)
  
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Commits on Sep 30, 2026
- Move to camb 2 and refresh the lock (#362)
  
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- Lock file maintenance (#356)
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Commits on Oct 1, 2026
Commits on Oct 2, 2026
- Read ShapePipe v1 and v2 products side by side (#343)
  
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- Merge develop into the tomography branch (#374)
  
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- Point the non-tomographic workflow at the merged tomographic API
  
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- Read the ("all", "all") pair in the B-mode summary and the SACC n(z)
  
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- Move the tests onto the merged API and pin the repaired seams
  
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  613e871
- Repair the tomography branch's own callers of reshaped helpers
  
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  b9a9e9b
- Merge the tomography branch (#307, tomographic leakage) into the integration branch
  
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  8631f60
- Apply pixel windows only to map-based pseudo-Cl spectra
  
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  45c51e5
- Pin the OneCovariance fixture to the real table; drop the GLASS xfail
  
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  497d7b8
- Keep the GLASS xfail until the re-locked image; cite the OneCovariance writer
  
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- Name the jackknife rho/tau draws by the id the library writes them under
  
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  f7f2abb
- Compute the iNKA fiducial C_ell with CCL, from the configured cosmology
  
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  d603c5c
- Default the catalogue pseudo-Cl wrapper to the ("all", "all") pair
  
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  551f5c9
- Let the object-wise leakage reader take a row selection
  
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  465ae28
- Restore Hartlap debiasing of simulation rho/tau covariances
  
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  e3bd484
- Seed jackknife patches across tomographic bins
  
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- Expect the rho/tau SACC part under the tomo_bin_all basename in the DAG test
  
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- Route rho/tau workflow paths through cv_basename helpers
  
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Commits on Oct 3, 2026
- Keep the iNKA fiducial C_ell on CAMB, as the tomography branch computes it
  
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- Tolerate NFS placeholders when the covariance rule clears its work directory
  
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- plot_tau_stats: use the tau-statistics error bars when no covariance type is given
  
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- Plot tau statistics with the configured tau covariance
  
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Commits on Oct 5, 2026
- Keep the joint pure-B Hartlap correction tied to its full data dimension
  
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  03bd3ad
- Protect the pinned TreeCorr layout from node CPU-count changes
  
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  c380868
- Require pure-E/B MC rebinning to use the data pair weights
  
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  5e5a640
- Keep covariance jobs inside the launched checkout and results tree
  
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  d1a1c94
- Keep the rho/tau driver on the launched catalogue configuration
  
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  bdfed2b
- Require both configured HSM flags to exclude failed star fits
  
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  b0a1652
- Require PSF fit sample widths to follow the selected covariance
  
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  eda87f8
- Check pure-E/B statistics through the bin-keyed result API
  
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  dd9e467
- Honor tomography when plotting and saving each COSEBIs bin pair
  
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  a71e5fa
- Transpose the opposite polarization block to preserve joint iNKA covariance
  
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- Aggregate Gaussian spectra from the requested seed rather than stale files
  
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  426b940
- Track per-bin tau centering as an upstream leakage defect
  
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  c0b2ac4
- Exercise the active covariance theory and workflow plotting APIs
  
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  114486c
- Average rho/tau jackknife covariances over seeded independent layouts
  
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  a6e0765
- Restore BE readback for single-field pseudo-Cl auto-spectra
  
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  5c25e3e
- Reject a single COSEBIs covariance for tomographic pairs
  
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  5d3b5d2
- Continue the iNKA noise bias below l_min at the lowest band's value
  
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- Give the tomographic COSEBIs regression per-pair jackknife covariances
  
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Commits

Commits on Aug 24, 2026

Commits on Aug 29, 2026

Commits on Aug 31, 2026

Commits on Sep 5, 2026

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Commits on Sep 16, 2026

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Commits on Sep 25, 2026

Commits on Sep 28, 2026

Commits on Sep 30, 2026

Commits on Oct 1, 2026

Commits on Oct 2, 2026

Commits on Oct 3, 2026

Commits on Oct 5, 2026