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Smokescreen blinding: per-catalogue custody, blind drawn once, parts sealed at birth - #253

Merged

cailmdaley merged 200 commits into

developfrom

feat/sacc-6-blinding

Oct 5, 2026

Commits on Jul 16, 2026
- feat(sacc_io): SACC read/write for the standard data-product layout
  
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- fix(sacc_io): enforce ascending grids; readers in insertion order
  
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- One SACC file per catalogue version: fine xi rides as grid='fine' points
  
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- Word fine-block covariance source tool-agnostically (OneCovariance go-forward)
  
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- feat(sacc_io): type=data|mock stamp with fail-closed load; merge + update_statistic
  
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- Address review: rename grid values to reporting/integration; clarify comments
  
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- Simplify sacc_io writers/readers and test builders
  
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- fix(sacc_io): fail loud on unmatched selections; merge/update guards
  
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- refactor(blinding): stack on PR-2's canonical sacc_io; sweep grid vocabulary
  
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- Rebuild PR4 on feat/sacc-2-sacc-io: drop vendored sacc_io, keep migration
  
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- test(blinding): adapt to canonical sacc_io save/load and relocated config
  
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- Migrate to canonical sacc_io API: typed save, fail-closed load, grid rename
  
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Commits on Jul 18, 2026
- sacc_io: guard merge() against inconsistent theta grids
  
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- sacc_io: extend merge guard to ell grids and bandpower windows; tag pseudo-Cl grid="reporting"
  
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Commits on Jul 21, 2026
- Store covariance block-diagonally in assemble_covariance
  
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  01fa5eb
- Unify pure-EB integration-grid default to 1000 bins
  
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- sacc_io: make optional statistic components genuinely optional
  
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- cosmo_val config: align COSEBIs integration grid with the 1000-bin default
  
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- Merge remote-tracking branch 'origin/feat/sacc-2-sacc-io' into feat/sacc-4-cosmo-val-sacc
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- feat(sacc): one terminal file + fail-closed assembly
  
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- docs(workflow): mark glass-mock A/B/C 'blind' as distinct from Smokescreen
  
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- fix(sacc): reconcile writers with the merged sacc_io API
  
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- Merge remote-tracking branch 'origin/develop' into feat/sacc-4-cosmo-val-sacc
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- chore(deps): restore develop's uv.lock SSOT; drop stale firecrown-era override machinery
  
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- chore(ci): restore develop's lint.yml (PR #264 server-side ruff autofix) lost in stale merge
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- Merge remote-tracking branch 'origin/feat/sacc-4-cosmo-val-sacc' into feat/sacc-6-blinding
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- feat(blinding): wire blind-at-birth custody into the SACC migration DAG
  
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- test(blinding): wiring tests for the blind-at-birth DAG
  
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- revert(sacc): drop xi_integration from terminal file per #247 ruling
  
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- Merge sacc-4: drop xi_integration from terminal gather per #247 ruling
  
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- chore: drop files resurrected from a stale base (deleted on develop)
  
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- chore(2pcf): default integration grid to 1000 bins
  
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- feat(cosmo_val): cv_cosebis/cv_pure_eb consume the ξ± SACC parts; per-version xi_highres
  
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- Merge feat/sacc-4: consume ξ± parts + per-version xi_highres, blinding-aware
  
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Commits on Aug 17, 2026
- Blind through the fork's vector core, and bind the draw scheme into custody
  
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- One terminal seam: route the production assembly through sacc_io.gather
  
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- Take the commitment from the fork, so it stops publishing the seed
  
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- Make the run type real, and stamp rho/tau for the blind
  
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Commits on Aug 30, 2026
Commits on Aug 31, 2026
Commits on Sep 9, 2026
- Merge remote-tracking branch 'origin/develop' into feat/sacc-4-cosmo-val-sacc
  
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- chore: delete dead cosmocov drivers and repoint dangling references
  
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- papers Snakefiles: read cat_config through code/, not the deprecated pure_eb symlink
  
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Commits on Sep 25, 2026
- papers/bmodes: read the pseudo-Cl spectrum from its SACC part
  
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- Merge remote-tracking branch 'origin/develop' into feat/sacc-4-cosmo-val-sacc
  
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  2abf87c
- Drop generate_cosmocov_ini.py and the README install section
  
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- Merge remote-tracking branch 'origin/develop' into feat/sacc-4-cosmo-val-sacc
  
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- Merge #251 (feat/sacc-4-cosmo-val-sacc) into feat/sacc-6-blinding
  
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- Record develop (#251 squash-merge) as merged
  
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- tests: pin pure-E/B on exact-binning and committed ξ±; drop dead catalogue paths
  
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- cosmo_val: pin TreeCorr's min_top so ξ± does not depend on the machine
  
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- b_modes: one pure-E/B kernel call; tests pin each pure-E/B fact once
  
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- b_modes: one pure-E/B transform per jackknife realisation
  
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- tests: glue-section header stops enumerating which tests compare values
  
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- workflow: host/image parity check, catalogue config from the checkout, one output root, one integration grid
  
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- workflow: the image lives under ~/.cache; launch guards read the real image
  
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- workflow: a ξ± part's covariance follows its patches, in one place
  
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- workflow/README: scope the output-root sentence to papers/cosmo_val
  
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- workflow: SLURM jobs start whatever the launch's XDG_CACHE_HOME; P4/P5 test what a launch does
  
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- papers/bmodes: the sweep drivers read the image from ~/.cache, as container.py does
  
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- run_2pcf: a ξ± part carries the covariance its measurement estimated
  
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- workflow/tests: the launch-cache test answers the profile's apptainer check with a stub
  
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- workflow/tests: the smoke Snakefile composes workflow/ as the entry Snakefiles do
  
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- Merge feat/workflow-baseline into feat/sacc-6-blinding
  
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- Blinding: custody declared per catalogue, blind drawn once outside the DAG, parts sealed at birth
  
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Commits on Sep 26, 2026
Commits on Sep 27, 2026
- workflow: resolve_container checks the image it returns
  
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- workflow/tests: P5 checks that the job imports the launched checkout's src
  
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- workflow: COSMO_VAL defaults to the launched checkout's own output tree
  
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  bda60da
- calculate_2pcf: the ξ± text dump carries columns only, so it reads back
  
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- Merge feat/workflow-baseline into feat/sacc-6-blinding
  
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- Blinding tests: each audit, reveal, init and open_blind guard is red without it
  
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- Blinding tests: inputs under two blinds or two catalogues are refused
  
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- custody.confirm: the job agrees with its Snakemake, not with the launch
  
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- workflow: output roots are resolved; P4 dry-runs name no output tree
  
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- Blinding: drop the audit's tracer-name check and xi_ccl's unused ell
  
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- workflow/tests: a symlinked COSMO_VAL declares the resolved paths
  
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- workflow: the checkout and output roots take the plain /nXXdataN spelling
  
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- Blinding: init drops its seed round-trip check
  
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- workflow: roots take the plain spelling on every host
  
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- workflow/README: a collaborator's launch names its own COSMO_INFERENCE
  
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- custody: the registry is spelled as its catalogue config is
  
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- No plaintext ξ±: CosmologyValidation returns sealed parts, no text dumps, patch centres as inputs
  
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- papers/bmodes: the pure-E/B sweep reads the xi sweep's SACC parts
  
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- Patch centres are drawn by hand, never by a rule
  
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- workflow/tests: the candide profile's job bound is checked on any host
  
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- Merge feat/workflow-baseline into feat/sacc-6-blinding
  
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- sacc_io: under a blind, every data type needs a blinding rule
  
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Commits on Sep 28, 2026
- custody: a blind conceals data, whatever entry names it
  
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- profiles: wait 60 s for a job's outputs to appear
  
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- tests: blinding and custody as property tests over the seal and custody tables
  
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- tests: DAG properties read one forced listing; e2e drops unit-guarded checks
  
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- rho_tau_stats: 6 h wall clock; the jackknife ρ/τ outruns the 60 min default
  
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- tests: keep the custody contracts, drop precision and bound tests
  
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- tests: cut to the custody core, one blinded pass end to end
  
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- Scrub the n(z) A/B/C blind: an n(z) is a catalogue entry's
  
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  82b14fe
- custody: one registry reader, one comparison, seed paths rendered once
  
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  5b75e7a
- cosmo_val: jackknife pure-E/B and ⟨M_ap²⟩ from sealed parts; one TreeCorr ξ± site
  
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- custody: a seed variant's custody needs no file; only its readers do
  
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- cat_config: the leakage n(z) is a path template, not an A/B/C blind key
  
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- tests: restore the candide toy run of rule xi, before and after a blind
  
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- pure_eb: its reporting part has its own grid tag, so it never replaces the fiducial one
  
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  ad03426
- Merge remote-tracking branch 'origin/develop' into feat/workflow-baseline
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- profiles: wait 60 s for a job's outputs to appear
  
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  bf1362b
- rho_tau_stats: 6 h wall clock; the jackknife ρ/τ outruns the 60 min default
  
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  6453924
- Scrub the n(z) A/B/C blind: an n(z) is a catalogue entry's
  
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- cat_config: the leakage n(z) is a path template, not an A/B/C blind key
  
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  64b73ec
- cat_config: SP_v1.4.11.2 reads the n(z) its covariance used
  
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  3f459b1
- Merge remote-tracking branch 'origin/refactor/scrub-legacy-blind' into feat/sacc-6-blinding
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- blinding_theory: Omega_c from CCL's own massive-neutrino density
  
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- workflow: no snakemake in the image, so any host Snakemake works
  
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  c27a504
- profiles: every key needed and non-default, each with its reason
  
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  299ab65
- Merge remote-tracking branch 'origin/feat/workflow-baseline' into refactor/scrub-legacy-blind
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- Merge refactor/scrub-legacy-blind into feat/sacc-6-blinding
  
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- workflow/tests: keep the sweep drivers' image-resolution test
  
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- workflow: jobs read the repo's matplotlibrc, never the launching user's
  
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- CONTRACTS: the host-side workflow imports only stdlib and snakemake
  
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  8d32fea
- Merge branch 'feat/workflow-baseline' into refactor/scrub-legacy-blind
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- Merge branch 'refactor/scrub-legacy-blind' into feat/sacc-6-blinding
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- profiles/default: bind /home; Snakemake's --home <workdir> keeps apptainer from mounting it
  
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  5020f13
- Merge branch 'feat/workflow-baseline' into refactor/scrub-legacy-blind
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- Merge branch 'refactor/scrub-legacy-blind' into feat/sacc-6-blinding
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- Merge origin/develop into feat/sacc-6-blinding
  
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- test_cosmo_val: ξ± does not depend on TreeCorr's thread count
  
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Commits on Sep 29, 2026
- Patch centres: develop's reuse-or-write, written atomically
  
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  e6e51d7
- Custody is one `blind:` per catalogue entry; a blind is one record outside git
  
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  507e68d
- Theory is one pluggable function per data type; γt is blindable
  
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  d4b52e3
- Tests: B-modes under a blind on synthetic ξ±; a custody flip reruns
  
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  283fa1e
- Custody token is checked, stamped as one key; theory fixes; tighter tests
  
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  750794c
- Pseudo-Cℓ windows as on develop; the pixel window is fix/pseudo-cl-pixel-window's
  
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  c62e3b3
- rho/tau script, workflow README and docstrings as on develop but for custody
  
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  d2bfc73
- pure-E/B non-additivity: state the measured range, not a cause
  
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  ea7e615
- Blinding: one table of standard estimators; any other type by a theory you pass
  
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  41bc44b
Commits on Sep 30, 2026
- Merge develop (camb 2, lock refresh) into feat/sacc-6-blinding
  
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  4fbf541
Commits on Oct 1, 2026
- Blinding is one Smokescreen call over a theory(params, s) vector
  
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  ae95e78
- custody: each catalogue's declared blind and its shear file, nothing more
  
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  f56b884
- CosmologyValidation and the workflow save under the declared blind
  
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  3dc1835
- Pure E/B takes its covariance from the CosmoCov integration-grid covariance
  
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  019c06b
- Remove scripts/xip_xim.py and scripts/map2.py
  
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  3ed0218
- Tests for the theory-vector blinding
  
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  3e22d4a
- Document blinding as blinds, a declared blind per catalogue and a theory
  
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  7dffd7b
- Merge develop (#368 workflow tidy-ups) into the blinding branch
  
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  cb5538c
- seal refuses a SACC that already carries a blind stamp, so a loaded part can't be shifted twice
  
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  1cd0b25
- test: the CPU-affinity test writes its catalogue with the shared synthetic helper
  
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  998593e
- plot_pure_eb: one covariance, the semi-analytic one; no var_method argument
  
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  8a840bd
- Merge develop (#373 pure-E/B operator) into the blinding branch
  
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  fb4b533
Commits on Oct 2, 2026
- Blinding in one stdlib-loadable module; custody, theory and the banner go
  
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- Blinds are checked against the catalogue config as written; seeded versions resolve on the host
  
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  06176c4
Commits on Oct 5, 2026
- Merge develop (tomographic API) into the blinding branch
  
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  9767327
- Declare blinds where develop added catalogues, and read parts as stamped
  
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- Name calculate_2pcf_version where the docs point at the sealing pattern
  
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- generate_pseudo_cl reads the (all, all) pair of its pseudo-Cl results
  
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  a3d1e02

Commits

Commits on Jul 16, 2026

Commits on Jul 18, 2026

Commits on Jul 21, 2026

Commits on Aug 17, 2026

Commits on Aug 30, 2026

Commits on Aug 31, 2026

Commits on Sep 9, 2026

Commits on Sep 25, 2026

Commits on Sep 26, 2026

Commits on Sep 27, 2026