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CTF estimator refactor - #1416

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garrettwrong wants to merge 44 commits into

developfrom

ctfest_tweaks

Open

CTF estimator refactor#1416
garrettwrong wants to merge 44 commits into
developfrom
ctfest_tweaks

Commits on Oct 8, 2026
- fixup log and pbar for ctf est
  garrettwrong
  committed
  8678291
- debugging, reconcile outputs with MATLAB
  garrettwrong
  committed
  fb9fe12
- move gd iters to an input parameter
  garrettwrong
  committed
  1604b8f
- split up elliptical average
  garrettwrong
  committed
  cf206f5
Commits on Oct 9, 2026
- cleanup some of the easier TODO items
  garrettwrong
  committed
  01d7045
Commits on Oct 12, 2026
- initial migration ctf est algo to estimate method
  garrettwrong
  committed
  24ae4dd
- begin cleanup image savig
  garrettwrong
  committed
  e217d18
- continue cleanup rounds
  garrettwrong
  committed
  3c82ce4
- remove redundant taper transpose
  garrettwrong
  committed
  c57e99c
- cleanup pca code/call
  garrettwrong
  committed
  26356d4
- temp timer line
  garrettwrong
  committed
  99689ad
- migrate the taper application to GPU
  garrettwrong
  committed
  c55fea1
Commits on Oct 13, 2026
- initial replace ctf_formula
  garrettwrong
  committed
  f0fdd7c
- continue replacing formula and fixing plots
  garrettwrong
  committed
  7633342
Commits on Oct 14, 2026
- continue ctf est code cleanup
  garrettwrong
  committed
  3d7fe31
- cleanup path searching, attempt to make recursive
  garrettwrong
  committed
  3ff9a9d
- optimize background fill, improve filepath handing
  garrettwrong
  committed
  e9db829
- fixup low_freq_cutoff
  garrettwrong
  committed
  bdf585d
- add optimized gd
  garrettwrong
  committed
  b5ca44f
- update ctf cli opts
  garrettwrong
  committed
  f3436e7
Commits on Oct 15, 2026
- continue arg cleanup
  garrettwrong
  committed
  951ed1b
- rm stray todos in legacy code
  garrettwrong
  committed
  547194c
- extend to additional basis and more arg work
  garrettwrong
  committed
  cc59c87
Commits on Oct 16, 2026
- initial add bfgs
  garrettwrong
  committed
  5951e6c
- continue cleanup
  garrettwrong
  committed
  a82470a
- skip long/hi-mem ctf tests
  garrettwrong
  committed
  132e707
- fixup scalar,0d,1d arg handling
  garrettwrong
  committed
  fe82ea1
Commits on Oct 19, 2026
- fixup path key for gallery
  garrettwrong
  committed
  999cc5a
- more flexible arg handling
  garrettwrong
  committed
  d79b4d6
- add option handling
  garrettwrong
  committed
  a1a3a2a
- optimize estimated psd
  garrettwrong
  committed
  08afcd4
- optimized opt1d stats/correlation compute
  garrettwrong
  committed
  31a3663
Commits on Oct 20, 2026
- expose opt1d loop to class and cli
  garrettwrong
  committed
  d478da8
- remove profiler lines
  garrettwrong
  committed
  3721f3f
- more stable with 4 tapers
  garrettwrong
  committed
  d66b41c
- fix argname typo in cli
  garrettwrong
  committed
  01f53db
- handle failure to find soln and improve linprog call:
  garrettwrong
  committed
  65b4cee
- default for psd_size
  garrettwrong
  committed
  af31621
Commits on Oct 21, 2026
- improve numerical stability by fixing basis artifacts
  garrettwrong
  committed
  1f6524e
- less redundant name in starfiles
  garrettwrong
  committed
  7a97395
Commits on Oct 22, 2026
- fix ast angle tranpose issue (blocks.T) and cleanup some strings
  garrettwrong
  committed
  43a7017
- optimize preproc micrograph and rm legacy implementation
  garrettwrong
  committed
  5729178
Commits on Oct 26, 2026
- review string and arg cleanup
  garrettwrong
  committed
  6311a50
- fix the implicitly hardcoded 10 step size
  garrettwrong
  committed
  3da7678

Commits

Commits on Oct 8, 2026

Commits on Oct 9, 2026

Commits on Oct 12, 2026

Commits on Oct 13, 2026

Commits on Oct 14, 2026

Commits on Oct 15, 2026

Commits on Oct 16, 2026

Commits on Oct 19, 2026

Commits on Oct 20, 2026

Commits on Oct 21, 2026

Commits on Oct 22, 2026

Commits on Oct 26, 2026