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Repo tidy-up from 2026-09-28 feedback (part 8/9) - #22

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Repo tidy-up from 2026-09-28 feedback (part 8/9)#22
s28ale-maker wants to merge 14 commits into
pr-07-planning-pubmedfrom
pr-08-tidy-up

Commits on Sep 28, 2026
- chore: tidy repo layout (Phase 1 of 2026-09-28 tidy plan)
  
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  2dce48c
- chore: finish Phase 1 - remove Notes.md, list every reports/ file
  
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  7a4c52e
- docs: short README, docs/ pages, folder READMEs, file-placement rules (Phase 2)
  
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  98e1f94
- docs: soulcap-cl-matching skill records decisions in curated_mappings.tsv
  
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  fb1bc3a
- feat: soulcap-resolved lists cell types whose markers all resolve to PRO (Phase 4)
  
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- feat: specific reasons for withheld markers, CD3/CD8 decision brief, SOULCAP feedback draft (Phase 3)
  
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- docs: verified clone targets, GO-complex hypothetical, identifier rule, CL candidates
  
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  a4e8b75
- feat: structured literature evidence table with full-text quote verification (Phase 6)
  
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  928ff6c
- feat: evidence candidates, source types, trailing-punctuation status; archive narratives
  
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  37e84e2
- docs: agenda for the 12 Oct 2026 meeting with David (Phase 9)
  
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  d033d71
- feat: apply approved WebFetch replacements, remove fabricated rows, panel_or_method type
  
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  fea790b
- feat: replace spliced Tcm/Tem quote, classify application studies, agenda numbers
  
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  37c9feb
- feat: add CCR7 row for the Gholizadeh Figure 4 legend quote
  
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- docs: note CCR7 evidence has no SOULCAP row to attach to (agenda)
  
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  77ae834

Commits

Commits on Sep 28, 2026