Issues

• CL terms appear to be both Individuals and Classes in CL_KG

  bug
  Cellular-Semantics/CL_KG#92 · Filter by author dosumis opened on Jul 24, 2025
  

• Marker sets don't wire up to clusters

  Cellular-Semantics/CL_KG#88 · Filter by author dosumis opened on Jul 2, 2025
  3

  

• Test queries - markers -> GO

  Cellular-Semantics/CL_KG#87 · Filter by author dosumis opened on Jul 2, 2025
  3

• Duplicate "Unknown" Metadata Nodes in Cell Clusters

  Cellular-Semantics/CL_KG#84 · Filter by author ubyndr opened on Apr 15, 2025
  1

  

• Make pub nodes

  Cellular-Semantics/CL_KG#71 · Filter by author dosumis opened on Jan 29, 2025

• Clarify relationship cell set to sample to sample metadata

  Schema
  Cellular-Semantics/CL_KG#67 · Filter by author dosumis opened on Dec 12, 2024
  5

  

• Clarify schema for marker relations

  Cellular-Semantics/CL_KG#66 · Filter by author dosumis opened on Dec 12, 2024
  2

  

• Generate 'pseudo bulk' summary stats for gene expression in clusters

  Cellular-Semantics/CL_KG#51 · Filter by author dosumis opened on Nov 22, 2024
  2

• Bridging PRO, proteins, genes, transcripts

  Cellular-Semantics/CL_KG#49 · Filter by author dosumis opened on Nov 21, 2024 · End June 2025 release
  8

  

• Review curation SoP

  Cellular-Semantics/CL_KG#40 · Filter by author dosumis opened on Nov 8, 2024
  2

• integrate FR match similarity scores

  Cellular-Semantics/CL_KG#27 · Filter by author dosumis opened on Sep 29, 2024
  1

  

• Calc information content scores for CL terms using extended graph

  Cellular-Semantics/CL_KG#3 · Filter by author dosumis opened on Feb 28, 2024

• Calculating transcriptomic variance as a measure of granularity for cell types

  Cellular-Semantics/CL_KG#2 · Filter by author dosumis opened on Feb 23, 2024
  13