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--alignEndsType on pairs: extend a mate's two ends while stitching (100M, AS:182 as STAR) - #2

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fix/end-to-end-pairs
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BenjaminDEMAILLE wants to merge 1 commit into
perf/hotpathsfrom
fix/end-to-end-pairs

--alignEndsType on pairs: extend a mate's two ends while stitching

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