Adding support for .jpk-qi-data and .bin files#190
Open
Conversation
…igger point or by contact point
… a function to general loader
…make the save an adjustable option
… once, then extracting separately
…files and removing the ability to run curve analysis directly in the reader
…ore robust coordinate access
…o eagerly load lazy loaded data
…me efficient method
…g to memory then saving in one go when duplicating data to h5
…sampled curves then are streamed directly into h5
…much more memory efficient
Codecov Report❌ Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## main #190 +/- ##
===========================================
- Coverage 79.84% 47.45% -32.40%
===========================================
Files 12 15 +3
Lines 928 1806 +878
===========================================
+ Hits 741 857 +116
- Misses 187 949 +762 ☔ View full report in Codecov by Sentry. 🚀 New features to boost your workflow:
|
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Adds support for .jpk-qi-data files, allowing the loading of the image for the selected channel. It also allows for the raw force-distance curve data as well as metadata for each curve to be loaded efficiently, using a lazy data structure approach that loads each section of the dataset into memory only when it is required.
The updates also allow for the conversion of .jpk-qi-data files into a HDF5 file format (.h5-jpk) for much faster mass analysis. Hence, the h5-jpk loading code has also been updated to support the loading of these converted files.
The update also allows .bin with different binary formats to be loaded.
closes #174 closes #173