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| # SPDX-FileCopyrightText: 2026 The RISE Project | |
| # SPDX-License-Identifier: MIT | |
| --- | |
| # This workflow is based on: https://github.com/biocore/biom-format/blob/2.1.17/.github/workflows/wheels.yml | |
| name: Build biom-format wheels (riscv64) | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| version: | |
| description: 'Version glob to (re)build; empty builds every version of docs/packages/biom-format.yaml not released yet' | |
| required: false | |
| default: '' | |
| pull_request: | |
| branches: [main] | |
| paths: | |
| - '.github/workflows/build-biom-format.yml' | |
| - 'docs/packages/biom-format.yaml' | |
| push: | |
| branches: [main] | |
| paths: | |
| - '.github/workflows/build-biom-format.yml' | |
| - 'docs/packages/biom-format.yaml' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read # to fetch code (actions/checkout) | |
| env: | |
| MANYLINUX_RISCV64_IMAGE: quay.io/pypa/manylinux_2_39_riscv64 | |
| jobs: | |
| setup: | |
| uses: $/.github/workflows/_setup.yml | |
| with: | |
| package: biom-format | |
| version: ${{ inputs.version }} | |
| build_wheels: | |
| needs: [setup] | |
| if: needs.setup.outputs.versions != '[]' | |
| name: Build biom-format ${{ matrix.version }} ${{ matrix.python }}-manylinux_riscv64 | |
| runs-on: ubuntu-24.04-riscv | |
| timeout-minutes: 60 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| version: ${{ fromJSON(needs.setup.outputs.versions) }} | |
| python: ["cp312", "cp313", "cp314", "cp314t"] | |
| include: | |
| # pandas (a hard runtime requirement) publishes no cp314t wheel on | |
| # any platform or index, so the wheel itself builds fine but can't | |
| # be installed for testing under cp314t; skip only the test phase. | |
| - python: "cp314t" | |
| test_skip: "*" | |
| env: | |
| BIOM_FORMAT_VERSION: ${{ matrix.version }} | |
| steps: | |
| - name: Checkout biom-format ${{ env.BIOM_FORMAT_VERSION }} | |
| uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 | |
| with: | |
| repository: biocore/biom-format | |
| ref: ${{ env.BIOM_FORMAT_VERSION }} | |
| persist-credentials: false | |
| - name: Checkout python-wheels | |
| uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 | |
| with: | |
| path: python-wheels | |
| persist-credentials: false | |
| - name: Apply patches | |
| if: hashFiles(format('python-wheels/patches/biom-format/{0}/*.patch', env.BIOM_FORMAT_VERSION)) != '' | |
| run: git apply -v python-wheels/patches/biom-format/${{ env.BIOM_FORMAT_VERSION }}/*.patch | |
| - name: Build wheels | |
| uses: pypa/cibuildwheel@1828c10ab37f080699c7b81cea34097c684a7074 # v4.2.0 | |
| with: | |
| output-dir: wheelhouse/ | |
| only: ${{ matrix.python }}-manylinux_riscv64 | |
| env: | |
| CIBW_MANYLINUX_RISCV64_IMAGE: ${{ env.MANYLINUX_RISCV64_IMAGE }} | |
| # numpy/scipy/pandas/h5py are build/runtime deps we ship on the | |
| # registry; pin resolution to our wheels so pip doesn't instead pick | |
| # PyPI's newer sdist-only releases (gotcha 84). cython has no | |
| # riscv64 wheel on the registry but compiles from sdist in seconds, | |
| # so it's left free to build. | |
| CIBW_ENVIRONMENT: >- | |
| PIP_EXTRA_INDEX_URL=https://pypi.riseproject.dev/simple/ | |
| PIP_ONLY_BINARY=numpy,scipy,pandas,h5py | |
| CIBW_TEST_SKIP: ${{ matrix.test_skip }} | |
| - uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1 | |
| with: | |
| name: biom-format-${{ env.BIOM_FORMAT_VERSION }}-${{ matrix.python }}-manylinux_riscv64 | |
| path: wheelhouse/*.whl | |
| if-no-files-found: error | |
| publish: | |
| name: Publish biom-format ${{ matrix.version }} | |
| needs: [setup, build_wheels] | |
| if: needs.setup.outputs.versions != '[]' | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| version: ${{ fromJSON(needs.setup.outputs.versions) }} | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| uses: $/.github/workflows/_publish-wheel.yml | |
| secrets: | |
| app-private-key: ${{ secrets.RISEPROJECT_APP_PRIVATE_KEY }} | |
| with: | |
| artifact-pattern: biom-format-${{ matrix.version }}-*-manylinux_riscv64 |