cloudscope/pyproject.toml at main · mapmanager/cloudscope · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
[project]
name = "cloudscope"
version = "0.1.2"
description = "Thin-frontend NiceGUI app for viewing, annotating, and analyzing acquisition-backed files."
readme = "README.md"
authors = [
    { name = "Robert Cudmore", email = "robert.cudmore@gmail.com" },
]
keywords = [
    "acquisition",
    "image-analysis",
    "microscopy",
    "nicegui",
    "visualization",
]

classifiers = [
    "Development Status :: 3 - Alpha",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.12",
    "Operating System :: OS Independent",
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering",
    "Topic :: Scientific/Engineering :: Image Processing",
]
requires-python = ">=3.12"
dependencies = [
    "nicegui>=3.10.0",
    "numpy>=2.4.4",
    "pandas>=3.0.2",
    "plotly>=6.7.0",
    "scipy>=1.17.1",
    "tifffile>=2026.4.11",
    "czifile>=2026.4.11",
    "oirfile>=2026.4.18",
    "platformdirs>=4.9.6",
    "pywebview>=6.2.1",
    "pillow>=12.2.0",
    "scikit-image>=0.24.0",
    "pyperclip", # to copy tables
    "pooch>=1.9.0", # to download from cloudscope-data
    "pyperclipimg>=0.2.0", # to copy plotly plot
    "tabulate>=0.10.0",
    "zarr>=3.2.1",
    "ome-zarr>=0.17.0",
    "ngff-zarr>=0.35.1",
    "dask[array]>=2026.6.0",
]

[build-system]
requires = ["uv_build>=0.9.2,<0.10.0"]
build-backend = "uv_build"

[dependency-groups]
docs = [
    "mkdocs>=1.6.1",
    "mkdocs-material",
    "mkdocstrings[python]",
    "mkdocs-section-index",
    "mkdocs-jupyter",
    "pymdown-extensions",
    "matplotlib",
]

dev = [
    "pytest>=8.4.2",
    "pytest-cov>=7.0.0",
    "ruff>=0.15.11",
]

[tool.pytest.ini_options]
minversion = "8.0"
testpaths = ["tests"]
pythonpath = ["src"]
addopts = "-ra"

[tool.coverage.run]
omit = [
    "src/cloudscope/app.py",
    "src/cloudscope/devtools/*",
    "src/nicewidgets/raster_viewer/demo/*",
    "src/nicewidgets/table_widget/demo_app.py",
    "src/nicewidgets/gui_defaults.py",
]

[tool.ruff]
line-length = 140
target-version = "py312"
src = ["src", "tests"]

[tool.ruff.lint]
select = [
    "E",
    "F",
    "I",
    "UP",
    "B",
]
ignore = ["I001"] # Specifically turns off unsorted-imports

[tool.ruff.format]
quote-style = "single"
indent-style = "space"

[project.urls]
Homepage = "https://github.com/mapmanager/cloudscope"
Repository = "https://github.com/mapmanager/cloudscope"
Issues = "https://github.com/mapmanager/cloudscope/issues"
Documentation = "https://mapmanager.github.io/cloudscope/"