Preserve CodeQL patches in updated Bazel modules

Keep the fmt Windows Unicode workaround and the rules_shell pin when updating the patched modules.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

Author: jketema

misc/bazel/registry/modules/fmt/12.2.0-codeql.1/overlay/BUILD.bazel

@@ -48,8 +48,9 @@ cc_library(
     hdrs = glob([
         "include/fmt/*.h",
     ]),
-    copts = select({
-        "@rules_cc//cc/compiler:msvc-cl": ["/utf-8"],
+    # CodeQL change: disable UTF8 support, it's causing issues on Windows
+    defines = select({
+        "@rules_cc//cc/compiler:msvc-cl": ["FMT_UNICODE=0"],
         "//conditions:default": [],
     }),
     includes = ["include"],

misc/bazel/registry/modules/fmt/12.2.0-codeql.1/source.json

@@ -3,7 +3,7 @@
     "integrity": "sha256-ovSo1RF4+VTkwzkAf3ft12ugyy42+HpI5aVAPZvlh48=",
     "strip_prefix": "fmt-12.2.0",
     "overlay": {
-        "BUILD.bazel": "sha256-BKWH8pPJ8RaLgAt5l9eceTsN7cAdZz5nut+MR7jScbU=",
+        "BUILD.bazel": "sha256-Zn5kky5jBkuqoek9UpzuHX4sTkqyhUKnjENJwJxRCEI=",
         "MODULE.bazel": "sha256-VcjblZqKNctLUTX1rWpwOehV8rd4X23XeJzs+S5tfCk="
     }
 }

misc/bazel/registry/modules/rules_dotnet/0.22.2-codeql.1/MODULE.bazel

@@ -47,7 +47,7 @@ use_repo(apphost_packs_extension, "dotnet.apphost_packs")
 bazel_dep(name = "bazel_skylib", version = "1.7.1")
 bazel_dep(name = "platforms", version = "1.0.0")
 bazel_dep(name = "bazel_lib", version = "3.0.0")
-bazel_dep(name = "rules_shell", version = "0.5.0")
+bazel_dep(name = "rules_shell", version = "0.6.1")
 
 # Dev dependencies
 bazel_dep(name = "rules_pkg", version = "1.1.0", dev_dependency = True)