From e96842fefa1bde2c7301bbde0eeed8faf8efcdb7 Mon Sep 17 00:00:00 2001
From: "alvaro.gonzalez" <alvaro.gonzalez@csc.fi>
Date: Mon, 26 Jan 2026 14:32:49 +0200
Subject: [PATCH 1/3] Add Read the docs files. Before they were auto generated

---
 .readthedocs.yaml              | 14 ++++++++++++++
 documentation/conf.py          | 28 ++++++++++++++++++++++++++++
 documentation/index.rst        | 18 ++++++++++++++++++
 documentation/requirements.txt | 14 ++++++++++++++
 4 files changed, 74 insertions(+)
 create mode 100644 .readthedocs.yaml
 create mode 100644 documentation/conf.py
 create mode 100644 documentation/index.rst
 create mode 100644 documentation/requirements.txt

diff --git a/.readthedocs.yaml b/.readthedocs.yaml
new file mode 100644
index 00000000..ff8edf65
--- /dev/null
+++ b/.readthedocs.yaml
@@ -0,0 +1,14 @@
+version: 2
+
+build:
+  os: ubuntu-24.04
+  tools:
+    python: "3.11"
+
+sphinx:
+  configuration: documentation/conf.py
+
+python:
+  install:
+    - requirements: documentation/requirements.txt
+
diff --git a/documentation/conf.py b/documentation/conf.py
new file mode 100644
index 00000000..e0feda28
--- /dev/null
+++ b/documentation/conf.py
@@ -0,0 +1,28 @@
+# -- Project information -----------------------------------------------------
+
+project = "TESK"
+author = "TESK contributors"
+
+# -- General configuration ---------------------------------------------------
+
+extensions = [
+    "myst_parser",
+]
+
+templates_path = ["_templates"]
+exclude_patterns = []
+
+# Markdown support
+source_suffix = {
+    ".rst": "restructuredtext",
+    ".md": "markdown",
+}
+
+master_doc = "index"
+
+# -- HTML output -------------------------------------------------------------
+
+html_theme = "sphinx_rtd_theme"
+
+html_static_path = ["_static"]
+
diff --git a/documentation/index.rst b/documentation/index.rst
new file mode 100644
index 00000000..5abef772
--- /dev/null
+++ b/documentation/index.rst
@@ -0,0 +1,18 @@
+TESK documentation
+==================
+
+TESK (Task Execution Service for Kubernetes) provides a GA4GH-compliant
+Task Execution Service implementation designed to run on Kubernetes.
+
+This documentation describes the architecture, deployment, and integration
+options for TESK.
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Contents
+
+   tesintro
+   deployment
+   integrated_wes_tes
+   local_ftp
+
diff --git a/documentation/requirements.txt b/documentation/requirements.txt
new file mode 100644
index 00000000..ff8edf65
--- /dev/null
+++ b/documentation/requirements.txt
@@ -0,0 +1,14 @@
+version: 2
+
+build:
+  os: ubuntu-24.04
+  tools:
+    python: "3.11"
+
+sphinx:
+  configuration: documentation/conf.py
+
+python:
+  install:
+    - requirements: documentation/requirements.txt
+

From 510c782dafb3a4161beb248a706e31ed4c537991 Mon Sep 17 00:00:00 2001
From: Tristan <74349933+trispera@users.noreply.github.com>
Date: Mon, 26 Jan 2026 14:35:21 +0200
Subject: [PATCH 2/3] Apply suggestion from @sourcery-ai[bot]

Co-authored-by: sourcery-ai[bot] <58596630+sourcery-ai[bot]@users.noreply.github.com>
---
 documentation/conf.py | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/documentation/conf.py b/documentation/conf.py
index e0feda28..b1c7bb7e 100644
--- a/documentation/conf.py
+++ b/documentation/conf.py
@@ -18,7 +18,11 @@
     ".md": "markdown",
 }
 
-master_doc = "index"
+# Root document (Sphinx 2.0+)
+root_doc = "index"
+
+# Backwards compatibility for older Sphinx versions
+master_doc = root_doc
 
 # -- HTML output -------------------------------------------------------------
 

From b778f925c47ef0aa3c16f96afc2c5eacfc80b693 Mon Sep 17 00:00:00 2001
From: "alvaro.gonzalez" <alvaro.gonzalez@csc.fi>
Date: Mon, 26 Jan 2026 14:37:09 +0200
Subject: [PATCH 3/3] Ups

---
 documentation/requirements.txt | 16 +++-------------
 1 file changed, 3 insertions(+), 13 deletions(-)

diff --git a/documentation/requirements.txt b/documentation/requirements.txt
index ff8edf65..45c2034a 100644
--- a/documentation/requirements.txt
+++ b/documentation/requirements.txt
@@ -1,14 +1,4 @@
-version: 2
-
-build:
-  os: ubuntu-24.04
-  tools:
-    python: "3.11"
-
-sphinx:
-  configuration: documentation/conf.py
-
-python:
-  install:
-    - requirements: documentation/requirements.txt
+sphinx
+sphinx-rtd-theme
+myst-parser