From a7ab257104aa7c657a9d817f304a61490219c2f4 Mon Sep 17 00:00:00 2001 From: Bagaev Dmitry Date: Wed, 30 Sep 2026 09:48:37 +0200 Subject: [PATCH 1/5] Port the RxInfer notebooks to ReactiveMP v7 RxInfer's next release runs on ReactiveMP v7, where rules are called with `@call_message_update_rule` and nodes other than the standard ones live in packages of their own. Three notebooks change: - Factor Graphs: the four `@call_rule typeof(f)(:target, Marginalisation) (m_x = ...)` cells become `getresult(@call_message_update_rule(node = f, target = :target, m = (x = ...,)))`. The node is the function itself, `+` or `*`, not its type. The messages are the same as before. - PP2: `Probit` comes from `ProbitMessagePassingRules`, loaded next to RxInfer; the text says so. The classifier's posterior is the same as on v6. - Dynamic Models: drop an unused `import RxInfer.ReactiveMP: getinterface, materialize!`. Checked by running all eleven RxInfer notebooks headless in Pluto, on Julia 1.13 in one environment with RxInfer's `refactor/reactivemp-v7` branch, ReactiveMP v7 and its rule packages developed by path. None errors, apart from the cell in "RxInfer tips and tricks" that errors on purpose, whose message is unchanged. Against the notebooks' own environments on Julia 1.12 the printed results agree, except PP4's free energy with inferred Q, 358.0 before and 357.2 now, which comes from ReactiveMP v7's corrected variational rule for MvNormalMeanCovariance (its conclusion holds), and the Factor Graphs regression, whose data differs on Julia 1.13 because `hash(seed)` in `stable_rand` changed there (v6 and v7 agree exactly on the same Julia). Not mergeable yet: the embedded Pluto environments still pin RxInfer 5, and the v7 packages are not registered. Once they are, re-pin the notebooks (tools/update_notebook_packages.jl) and add ProbitMessagePassingRules to PP2's environment. Co-Authored-By: Claude Opus 5.5 (1M context) --- lectures/Dynamic Models.jl | 4 ---- lectures/Factor Graphs.jl | 8 ++++---- probprog/PP2 - Bayesian regression and classification.jl | 3 ++- 3 files changed, 6 insertions(+), 9 deletions(-) diff --git a/lectures/Dynamic Models.jl b/lectures/Dynamic Models.jl index 39c318f8..011edd94 100644 --- a/lectures/Dynamic Models.jl +++ b/lectures/Dynamic Models.jl @@ -773,9 +773,6 @@ md""" # Code """ -# ╔═╡ dab295ff-5a02-4e4f-8f46-b0842b6bf1ff -import RxInfer.ReactiveMP: getinterface, materialize! - # ╔═╡ 07fe12dc-501c-407b-ab39-ba9a4845762c import RxInfer.Rocket: getrecent @@ -3993,7 +3990,6 @@ uuid = "23338594-aafe-5451-b93e-139f81909106" # ╟─f44e0303-dd28-48ad-9de2-7f7882f3923d # ╠═e66b2193-87c8-4645-bfcc-643ee006383a # ╠═f2a42c4d-9607-4f50-bbda-9a9a4942faab -# ╠═dab295ff-5a02-4e4f-8f46-b0842b6bf1ff # ╠═07fe12dc-501c-407b-ab39-ba9a4845762c # ╠═60201d93-64e8-42ce-85ab-8eb661223427 # ╟─ae8c57ce-b74d-4543-b25b-eee57ad2e415 diff --git a/lectures/Factor Graphs.jl b/lectures/Factor Graphs.jl index d2081865..6ba0c138 100644 --- a/lectures/Factor Graphs.jl +++ b/lectures/Factor Graphs.jl @@ -990,13 +990,13 @@ md""" md"Forward message on ``Z``:" # ╔═╡ e7e4b6d0-bdf0-4a93-9a73-7971e6e33065 -@call_rule typeof(+)(:out, Marginalisation) (m_in1 = NormalMeanVariance(1.0, 1.0), m_in2 = NormalMeanVariance(2.0, 1.0)) +getresult(@call_message_update_rule(node = +, target = :out, m = (in1 = NormalMeanVariance(1.0, 1.0), in2 = NormalMeanVariance(2.0, 1.0)))) # ╔═╡ 2f5415e5-70b1-47ea-9790-7ac953bca538 md"Backward message on ``X``:" # ╔═╡ 1b76ab6c-ffa2-40eb-a6c6-55d7097a5108 -@call_rule typeof(+)(:in1, Marginalisation) (m_out = NormalMeanVariance(3.0, 1.0), m_in2 = NormalMeanVariance(2.0, 1.0)) +getresult(@call_message_update_rule(node = +, target = :in1, m = (out = NormalMeanVariance(3.0, 1.0), in2 = NormalMeanVariance(2.0, 1.0)))) # ╔═╡ 965b886e-d294-11ef-1b10-0319896874cf md""" @@ -1018,13 +1018,13 @@ md""" md"Forward message on ``Y``:" # ╔═╡ 1be3121d-be18-46a1-9af9-f108a2257c22 -@call_rule typeof(*)(:out, Marginalisation) (m_A = PointMass(4.0), m_in = NormalMeanVariance(1.0, 1.0)) +getresult(@call_message_update_rule(node = *, target = :out, m = (A = PointMass(4.0), in = NormalMeanVariance(1.0, 1.0)))) # ╔═╡ e5658c95-6cd0-426f-b819-31f9f2c7eaf4 md"Backward message on ``X``:" # ╔═╡ 94ca674e-1a01-424c-8657-6510be7097c3 -@call_rule typeof(*)(:in, Marginalisation) (m_out = NormalMeanVariance(2.0, 1.0), m_A = PointMass(4.0)) +getresult(@call_message_update_rule(node = *, target = :in, m = (out = NormalMeanVariance(2.0, 1.0), A = PointMass(4.0)))) # ╔═╡ 965c18f8-d294-11ef-2456-b945a46241f4 md""" diff --git a/probprog/PP2 - Bayesian regression and classification.jl b/probprog/PP2 - Bayesian regression and classification.jl index c82a963b..3520698f 100644 --- a/probprog/PP2 - Bayesian regression and classification.jl +++ b/probprog/PP2 - Bayesian regression and classification.jl @@ -24,6 +24,7 @@ begin using Distributions using StatsFuns using RxInfer + using ProbitMessagePassingRules using Plots, StatsPlots default(label="", margin=10Plots.pt) end @@ -270,7 +271,7 @@ In a Probit likelihood function, the transfer (a.k.a. _link_) function is a cumu \Phi(x) = \frac{1}{\sqrt{2\pi}} \int_{-\infty}^{x} \exp \left(-\frac{t^2}{2} \right) \mathrm{d}t \, . ``` -In RxInfer, there is a special type of distribution called `Probit()`, which can be used as a likelihood function. +In RxInfer, there is a special type of distribution called `Probit()`, which can be used as a likelihood function. It comes from the package `ProbitMessagePassingRules`, loaded at the top of this notebook. """ From 2e711e7cbabadc0798385b034847728e8298a8a9 Mon Sep 17 00:00:00 2001 From: Bagaev Dmitry Date: Fri, 2 Oct 2026 12:00:48 +0200 Subject: [PATCH 2/5] Factor Graphs: `+` takes its terms as the group `in` ReactiveMP v7's `+` is n-ary: its interfaces are `out` and the group `in`, not `in1` and `in2`. The two addition-node cells pass the terms as a tuple, and the backward message targets the first term, `(:in, 1)`, with `nothing` at its own position. The messages are the same as before, N(3, 2) and N(1, 2). Co-Authored-By: Claude Opus 5.5 (1M context) --- lectures/Factor Graphs.jl | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/lectures/Factor Graphs.jl b/lectures/Factor Graphs.jl index 6ba0c138..c3c6d0e5 100644 --- a/lectures/Factor Graphs.jl +++ b/lectures/Factor Graphs.jl @@ -990,13 +990,13 @@ md""" md"Forward message on ``Z``:" # ╔═╡ e7e4b6d0-bdf0-4a93-9a73-7971e6e33065 -getresult(@call_message_update_rule(node = +, target = :out, m = (in1 = NormalMeanVariance(1.0, 1.0), in2 = NormalMeanVariance(2.0, 1.0)))) +getresult(@call_message_update_rule(node = +, target = :out, m = (in = (NormalMeanVariance(1.0, 1.0), NormalMeanVariance(2.0, 1.0)),))) # ╔═╡ 2f5415e5-70b1-47ea-9790-7ac953bca538 md"Backward message on ``X``:" # ╔═╡ 1b76ab6c-ffa2-40eb-a6c6-55d7097a5108 -getresult(@call_message_update_rule(node = +, target = :in1, m = (out = NormalMeanVariance(3.0, 1.0), in2 = NormalMeanVariance(2.0, 1.0)))) +getresult(@call_message_update_rule(node = +, target = (:in, 1), m = (out = NormalMeanVariance(3.0, 1.0), in = (nothing, NormalMeanVariance(2.0, 1.0))))) # ╔═╡ 965b886e-d294-11ef-1b10-0319896874cf md""" From 43b194490ca8afb968dad0002b24d9e483524279 Mon Sep 17 00:00:00 2001 From: bvdmitri Date: Mon, 19 Oct 2026 11:01:05 +0200 Subject: [PATCH 3/5] PP2: Probit comes with RxInfer ProbitMessagePassingRules does not exist: the Probit node is part of StandardMessagePassingRules, which RxInfer loads, so the notebook loads RxInfer alone and says so. Co-Authored-By: Claude Opus 5.5 (1M context) --- probprog/PP2 - Bayesian regression and classification.jl | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/probprog/PP2 - Bayesian regression and classification.jl b/probprog/PP2 - Bayesian regression and classification.jl index 3520698f..e6b95597 100644 --- a/probprog/PP2 - Bayesian regression and classification.jl +++ b/probprog/PP2 - Bayesian regression and classification.jl @@ -24,7 +24,6 @@ begin using Distributions using StatsFuns using RxInfer - using ProbitMessagePassingRules using Plots, StatsPlots default(label="", margin=10Plots.pt) end @@ -271,7 +270,7 @@ In a Probit likelihood function, the transfer (a.k.a. _link_) function is a cumu \Phi(x) = \frac{1}{\sqrt{2\pi}} \int_{-\infty}^{x} \exp \left(-\frac{t^2}{2} \right) \mathrm{d}t \, . ``` -In RxInfer, there is a special type of distribution called `Probit()`, which can be used as a likelihood function. It comes from the package `ProbitMessagePassingRules`, loaded at the top of this notebook. +In RxInfer, there is a special type of distribution called `Probit()`, which can be used as a likelihood function. It comes with RxInfer, which loads the standard nodes' rules. """ From 8db3358842491038cc3debbd23fde85c81d211a0 Mon Sep 17 00:00:00 2001 From: bvdmitri Date: Thu, 22 Oct 2026 09:40:07 +0200 Subject: [PATCH 4/5] Pin the RxInfer notebooks to RxInfer 6.1 RxInfer 6.1.0 and ReactiveMP 7.0.0 are registered, so the eight notebooks that load RxInfer (Factor Graphs, Dynamic Models, Intelligent Agents and Active Inference, PP1-PP4, RxInfer tips and tricks) now pin RxInfer ~6.1.0, resolved on Julia 1.12.7 like pluto-deployment-environment. In PP2, DataFrames' PrettyTables 2.4 conflicted with RxInfer 6.1's PrettyTables 3 compat, so its environment was updated as a whole within the existing compat bounds. The assignments keep their own RxInfer 4 pins. All eight notebooks run headless in Pluto without errors, apart from the cell in "RxInfer tips and tricks" that errors on purpose. Co-Authored-By: Claude Opus 5.5 --- lectures/Dynamic Models.jl | 954 ++++++------------ lectures/Factor Graphs.jl | 619 +++++------- ...Intelligent Agents and Active Inference.jl | 824 ++++++--------- minis/RxInfer tips and tricks.jl | 623 +++++------- ... Bayesian inference in conjugate models.jl | 625 ++++++------ ... Bayesian regression and classification.jl | 891 ++++++++-------- .../PP3 - variational Bayesian inference.jl | 610 +++++------ .../PP4 - Bayesian filtering and smoothing.jl | 610 +++++------ 8 files changed, 2389 insertions(+), 3367 deletions(-) diff --git a/lectures/Dynamic Models.jl b/lectures/Dynamic Models.jl index 011edd94..c551cab5 100644 --- a/lectures/Dynamic Models.jl +++ b/lectures/Dynamic Models.jl @@ -2,8 +2,8 @@ # v1.0.3 #> [frontmatter] -#> description = "Introduction to dynamic latent variable models, including HMMs and Kalman filters." #> image = "https://github.com/bmlip/course/blob/v2/assets/figures/Faragher-2012-cart-1.png?raw=true" +#> description = "Introduction to dynamic latent variable models, including HMMs and Kalman filters." #> #> [[frontmatter.author]] #> name = "BMLIP" @@ -949,11 +949,11 @@ StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" [compat] BmlipTeachingTools = "~1.4.1" -Distributions = "~0.25.127" +Distributions = "~0.25.132" Images = "~0.26.2" LaTeXStrings = "~1.4.0" Plots = "~1.41.6" -RxInfer = "~5.5.0" +RxInfer = "~6.1.0" StatsPlots = "~0.15.8" """ @@ -961,30 +961,13 @@ StatsPlots = "~0.15.8" PLUTO_MANIFEST_TOML_CONTENTS = """ # This file is machine-generated - editing it directly is not advised -julia_version = "1.13.0" +julia_version = "1.12.7" manifest_format = "2.1" -project_hash = "acdec6f444da009c65e4bbe38c566cbf0b1a8591" - -[[deps.ADTypes]] -git-tree-sha1 = "d9aaef7c63466eee4de23b4d9dad03629df54bea" -registries = "General" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.22.1" - - [deps.ADTypes.extensions] - ADTypesChainRulesCoreExt = "ChainRulesCore" - ADTypesConstructionBaseExt = "ConstructionBase" - ADTypesEnzymeCoreExt = "EnzymeCore" - - [deps.ADTypes.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" +project_hash = "1fc28aff68043fff393ea7c44bb624b395b420cd" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -registries = "General" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.5.0" weakdeps = ["ChainRulesCore", "Test"] @@ -995,22 +978,43 @@ weakdeps = ["ChainRulesCore", "Test"] [[deps.AbstractPlutoDingetjes]] git-tree-sha1 = "6c3913f4e9bdf6ba3c08041a446fb1332716cbc2" -registries = "General" uuid = "6e696c72-6542-2067-7265-42206c756150" version = "1.4.0" [[deps.AbstractTrees]] git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" -registries = "General" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.5" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "7063ad1083578215c7c4bf410368150abe8d5524" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.45" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.Adapt]] deps = ["LinearAlgebra"] -git-tree-sha1 = "daa72978cd7a624246e894a4f4f067706d4e17e2" -registries = "General" +git-tree-sha1 = "dee8388a9bec89c8713ad176f96960ae2f98598a" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.7.0" +version = "4.7.4" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -1020,7 +1024,6 @@ weakdeps = ["SparseArrays", "StaticArrays"] [[deps.AliasTables]] deps = ["PtrArrays", "Random"] git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" -registries = "General" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" version = "1.1.3" @@ -1031,30 +1034,26 @@ version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" -registries = "General" uuid = "ec485272-7323-5ecc-a04f-4719b315124d" version = "0.4.0" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436" -registries = "General" uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" -registries = "General" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.2+0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "3d0cabd25fab32390e3bcb82cd67e700aebd9816" -registries = "General" +git-tree-sha1 = "1aec1ff0dcaa83a484e7f72097562fa3102c6722" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.25.0" +version = "7.30.2" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -1064,7 +1063,9 @@ version = "7.25.0" ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceFillArraysExt = "FillArrays" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceGPUArraysCoreTrackerExt = ["GPUArraysCore", "Tracker"] ArrayInterfaceMetalExt = "Metal" ArrayInterfaceReverseDiffExt = "ReverseDiff" ArrayInterfaceSparseArraysExt = "SparseArrays" @@ -1079,6 +1080,7 @@ version = "7.25.0" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" @@ -1088,10 +1090,9 @@ version = "7.25.0" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "e0b47732a192dd59b9d079a06d04235e2f833963" -registries = "General" +git-tree-sha1 = "b4a2d2dfcaedf8f0cb93a970c4ccba6f632f14cc" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.12.2" +version = "1.15.1" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -1101,17 +1102,21 @@ weakdeps = ["SparseArrays"] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" version = "1.11.0" +[[deps.AutoregressiveMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "4c9f3f4edd4580e385535bce39a6a39f8f1a6aa9" +uuid = "bbb8872a-15f9-43f6-924d-37f12d04ed53" +version = "1.0.0" + [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" -registries = "General" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" -registries = "General" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" version = "0.4.8" @@ -1121,10 +1126,9 @@ version = "1.11.0" [[deps.BayesBase]] deps = ["Distributions", "DomainSets", "LinearAlgebra", "Random", "SpecialFunctions", "StaticArrays", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "e644fb61dcc7b0df1be931230d2b9bc3a96d912f" -registries = "General" +git-tree-sha1 = "cadec5ad37b53e1198f36524b30297fc0df98aae" uuid = "b4ee3484-f114-42fe-b91c-797d54a0c67e" -version = "1.5.9" +version = "1.5.12" weakdeps = ["FastCholesky"] [deps.BayesBase.extensions] @@ -1132,30 +1136,26 @@ weakdeps = ["FastCholesky"] [[deps.BitFlags]] git-tree-sha1 = "bbe1079eecf9c9fbb52765193ad2bae27ae09bc8" -registries = "General" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" version = "0.1.10" [[deps.BitSetTuples]] deps = ["TupleTools"] git-tree-sha1 = "aa19428fb6ad21db22f8568f068de4f443d3bacc" -registries = "General" uuid = "0f2f92aa-23a3-4d05-b791-88071d064721" version = "1.1.5" [[deps.BitTwiddlingConvenienceFunctions]] deps = ["Static"] git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" -registries = "General" uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" version = "0.1.6" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "0f606a9894e2bcda541ceb82a91a13c5d450ed97" -registries = "General" +git-tree-sha1 = "876d4c4b941cc8b079da79c88d9c2dee52b9dd13" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "1.9.3" +version = "1.10.3" [deps.BlockArrays.extensions] BlockArraysAdaptExt = "Adapt" @@ -1168,48 +1168,41 @@ version = "1.9.3" [[deps.BmlipTeachingTools]] deps = ["HypertextLiteral", "InteractiveUtils", "Markdown", "PlutoTeachingTools", "PlutoUI", "Reexport"] git-tree-sha1 = "721865ca80c702e053b7d3958c5de5295ad84eca" -registries = "General" uuid = "656a7065-6f73-6c65-7465-6e646e617262" version = "1.4.1" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" -registries = "General" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.9+0" [[deps.CEnum]] git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" -registries = "General" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.5.0" [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Preferences", "Static"] git-tree-sha1 = "f3a21d7fc84ba618a779d1ed2fcca2e682865bab" -registries = "General" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" version = "0.2.7" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] git-tree-sha1 = "1fa950ebc3e37eccd51c6a8fe1f92f7d86263522" -registries = "General" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.18.7+0" [[deps.CatIndices]] deps = ["CustomUnitRanges", "OffsetArrays"] git-tree-sha1 = "a0f80a09780eed9b1d106a1bf62041c2efc995bc" -registries = "General" uuid = "aafaddc9-749c-510e-ac4f-586e18779b91" version = "0.2.2" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" -registries = "General" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" version = "1.26.1" weakdeps = ["SparseArrays"] @@ -1218,64 +1211,55 @@ weakdeps = ["SparseArrays"] ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChunkCodecCore]] -git-tree-sha1 = "1a3ad7e16a321667698a19e77362b35a1e94c544" -registries = "General" +git-tree-sha1 = "3496e2b359c27793d12bec54ec94be7983a6ceb2" uuid = "0b6fb165-00bc-4d37-ab8b-79f91016dbe1" -version = "1.0.1" +version = "1.0.2" [[deps.ChunkCodecLibZlib]] deps = ["ChunkCodecCore", "Zlib_jll"] -git-tree-sha1 = "cee8104904c53d39eb94fd06cbe60cb5acde7177" -registries = "General" +git-tree-sha1 = "d4101e848e8d3f585d61d244c2fe0c80a70e6b3b" uuid = "4c0bbee4-addc-4d73-81a0-b6caacae83c8" -version = "1.0.0" +version = "1.1.0" [[deps.ChunkCodecLibZstd]] deps = ["ChunkCodecCore", "Zstd_jll"] git-tree-sha1 = "34d9873079e4cb3d0c62926a225136824677073f" -registries = "General" uuid = "55437552-ac27-4d47-9aa3-63184e8fd398" version = "1.0.0" [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" -registries = "General" uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" version = "0.1.13" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" -registries = "General" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" -registries = "General" +git-tree-sha1 = "970758a3d591a2a5c2a907c53f2e2f8c1b1d3537" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.8" +version = "0.7.9" [[deps.CodecZstd]] deps = ["TranscodingStreams", "Zstd_jll"] git-tree-sha1 = "da54a6cd93c54950c15adf1d336cfd7d71f51a56" -registries = "General" uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2" version = "0.8.7" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" -registries = "General" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" -registries = "General" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" weakdeps = ["StyledStrings"] @@ -1286,7 +1270,6 @@ weakdeps = ["StyledStrings"] [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" -registries = "General" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" version = "0.11.0" weakdeps = ["SpecialFunctions"] @@ -1297,33 +1280,35 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" -registries = "General" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" version = "0.13.1" [[deps.Combinatorics]] git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" -registries = "General" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" version = "1.1.0" +[[deps.CommonSolve]] +deps = ["PrecompileTools"] +git-tree-sha1 = "6c389fa857f6ca5a95474b52a52023fd77f24cb7" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.14" + [[deps.CommonSubexpressions]] deps = ["MacroTools"] git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" -registries = "General" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" [[deps.CommonWorldInvalidations]] -git-tree-sha1 = "f1697a56da59e8a2cefcbbfe71c13354a6f18c61" -registries = "General" +deps = ["PrecompileTools"] +git-tree-sha1 = "7c4ea0adfb7238bf4678aa36325863fab6163f6f" uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" -version = "1.1.0" +version = "1.2.2" [[deps.Compat]] deps = ["TOML", "UUIDs"] git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" -registries = "General" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] @@ -1334,30 +1319,35 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.5.5+2" +version = "1.3.1+2" [[deps.CompositeTypes]] git-tree-sha1 = "bce26c3dab336582805503bed209faab1c279768" -registries = "General" uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657" version = "0.1.4" +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + [[deps.ComputationalResources]] git-tree-sha1 = "52cb3ec90e8a8bea0e62e275ba577ad0f74821f7" -registries = "General" uuid = "ed09eef8-17a6-5b46-8889-db040fac31e3" version = "0.3.2" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" -registries = "General" +git-tree-sha1 = "d5e5fa1f0d6ca517edbbcd734efa93c6639405b0" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.5.1" +version = "2.7.1" [[deps.ConstructionBase]] git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" -registries = "General" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" version = "1.6.0" weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] @@ -1369,46 +1359,39 @@ weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [[deps.Contour]] git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" -registries = "General" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" [[deps.CoordinateTransformations]] deps = ["LinearAlgebra", "StaticArrays"] git-tree-sha1 = "a692f5e257d332de1e554e4566a4e5a8a72de2b2" -registries = "General" uuid = "150eb455-5306-5404-9cee-2592286d6298" version = "0.6.4" [[deps.CpuId]] deps = ["Markdown"] git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" -registries = "General" uuid = "adafc99b-e345-5852-983c-f28acb93d879" version = "0.3.1" [[deps.CustomUnitRanges]] git-tree-sha1 = "1a3f97f907e6dd8983b744d2642651bb162a3f7a" -registries = "General" uuid = "dc8bdbbb-1ca9-579f-8c36-e416f6a65cce" version = "1.0.2" [[deps.DataAPI]] git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" -registries = "General" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "6fb53a69613a0b2b68a0d12671717d307ab8b24e" -registries = "General" +git-tree-sha1 = "b0bc6d2cad1fed8b7fd59a1551a991cb3d2809e6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.5" +version = "0.19.6" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" -registries = "General" uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" version = "1.0.0" @@ -1420,96 +1403,54 @@ version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" -registries = "General" uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" version = "1.16.2+0" [[deps.DelimitedFiles]] deps = ["Mmap"] git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -registries = "General" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" +[[deps.DeltaMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase"] +git-tree-sha1 = "eb4eafdd796377c6dfc1e842363291c5db8525c6" +uuid = "ea5de7a7-24c9-4a61-90ce-ef77c844b13f" +version = "1.0.0" + + [deps.DeltaMessagePassingRules.extensions] + DeltaMessagePassingRulesProjectionExt = "ExponentialFamilyProjection" + + [deps.DeltaMessagePassingRules.weakdeps] + ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + [[deps.Dictionaries]] deps = ["Indexing", "Random", "Serialization"] git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" -registries = "General" uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" version = "0.4.6" [[deps.DiffResults]] deps = ["StaticArraysCore"] git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" -registries = "General" uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" version = "1.1.0" [[deps.DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] git-tree-sha1 = "79a2aca180a85c690c58a020d47b426954b590f8" -registries = "General" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.16.0" -[[deps.DifferentiationInterface]] -deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "2147a95a217cc8a78ec96ee03581adf129468e49" -registries = "General" -uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.18" - - [deps.DifferentiationInterface.extensions] - DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" - DifferentiationInterfaceDiffractorExt = "Diffractor" - DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] - DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" - DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" - DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" - DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] - DifferentiationInterfaceGTPSAExt = "GTPSA" - DifferentiationInterfaceHyperHessiansExt = "HyperHessians" - DifferentiationInterfaceMooncakeExt = "Mooncake" - DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] - DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] - DifferentiationInterfaceSparseArraysExt = "SparseArrays" - DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" - DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" - DifferentiationInterfaceStaticArraysExt = "StaticArrays" - DifferentiationInterfaceSymbolicsExt = "Symbolics" - DifferentiationInterfaceTrackerExt = "Tracker" - DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] - - [deps.DifferentiationInterface.weakdeps] - Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" - Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" - FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" - HyperHessians = "06b494a0-c8e0-40cc-ad32-d99506a00a6c" - Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" - SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.DiscreteTransitionMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase"] +git-tree-sha1 = "1bf03a659aa103303f73a2ef40d74c206b02305a" +uuid = "039b7295-e235-4523-a933-c224bd9a7e58" +version = "1.0.0" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" -registries = "General" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] @@ -1524,11 +1465,10 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" version = "1.11.0" [[deps.Distributions]] 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git-tree-sha1 = "6866aec60ef98e3164cd8d6855225684207e9dff" -registries = "General" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" version = "3.3.12+0" [[deps.FastCholesky]] deps = ["LinearAlgebra", "PositiveFactorizations"] -git-tree-sha1 = "1c0a81e006e40e9fcbd5f6f6cb42ac2700f86889" -registries = "General" +git-tree-sha1 = "02f0dc1afe2c0bb73a0881727a4bf771a19ec190" uuid = "2d5283b6-8564-42b6-bb00-83ed8e915756" -version = "1.4.3" -weakdeps = ["StaticArraysCore"] +version = "1.5.0" [deps.FastCholesky.extensions] + ReactantExt = "Reactant" StaticArraysCoreExt = "StaticArraysCore" + [deps.FastCholesky.weakdeps] + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] git-tree-sha1 = "4916117dd032ec5959b7633aedbbac408ca5ddeb" -registries = "General" uuid = "442a2c76-b920-505d-bb47-c5924d526838" version = "1.3.0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "8e9c059d6857607253e837730dbf780b6b151acd" -registries = "General" +git-tree-sha1 = "6621fef488e496356c9c9625d0562c12a6070819" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.19.0" +version = "1.20.0" weakdeps = ["HTTP"] [deps.FileIO.extensions] @@ -1686,10 +1604,9 @@ version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "2f979084d1e13948a3352cf64a25df6bd3b4dca3" -registries = "General" +git-tree-sha1 = "417289ac840d201005d9ed16789a46defccbe36d" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.16.0" +version = "1.18.1" weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [deps.FillArrays.extensions] @@ -1698,58 +1615,28 @@ weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] FillArraysStaticArraysExt = "StaticArrays" FillArraysStatisticsExt = "Statistics" -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "2e5742cda07276e1834281ada4cc71b6bfc87586" -registries = "General" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.31.1" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" - FiniteDiffSparseArraysExt = "SparseArrays" - FiniteDiffStaticArraysExt = "StaticArrays" - - [deps.FiniteDiff.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - -[[deps.FixedArguments]] -deps = ["TupleTools"] -git-tree-sha1 = "befa1ad59c77643dec6fc20d71fd6f5c3afcdadd" -registries = "General" -uuid = "4130a065-6d82-41fe-881e-7a5c65156f7d" -version = "0.1.1" - [[deps.FixedPointNumbers]] deps = ["Random", "Statistics"] git-tree-sha1 = "59af96b98217c6ef4ae0dfe065ac7c20831d1a84" -registries = "General" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.6" [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] git-tree-sha1 = "f85dac9a96a01087df6e3a749840015a0ca3817d" -registries = "General" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.17.1+0" [[deps.Format]] git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" -registries = "General" uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "2c5d0b0e12088cde2cf84afb2784415b1ea3dfee" -registries = "General" +git-tree-sha1 = "3b0f72e2ffef1a139ac450725c9ecd01c0a3c050" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.4.1" +version = "1.4.6" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -1758,21 +1645,18 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" -registries = "General" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" version = "2.14.3+1" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" -registries = "General" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.17+0" [[deps.FunctionMaps]] deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" -registries = "General" uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" version = "0.1.2" @@ -1781,17 +1665,21 @@ deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" version = "1.11.0" +[[deps.GCVMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "StandardMessagePassingRules", "StatsFuns"] +git-tree-sha1 = "b9d896eff3b7dd887b119675f96d210abc31f2a9" +uuid = "2bb838d1-ae36-49a2-8c64-82a0acccfa93" +version = "1.0.0" + [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" -registries = "General" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" version = "3.4.1+1" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] git-tree-sha1 = "f954322d5de03ec630d177cda203dcd92b6be399" -registries = "General" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" version = "0.73.26" @@ -1804,51 +1692,49 @@ version = "0.73.26" [[deps.GR_jll]] deps = ["Artifacts", 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["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] git-tree-sha1 = "45288942190db7c5f760f59c04495064eedf9340" -registries = "General" uuid = "b0724c58-0f36-5564-988d-3bb0596ebc4a" version = "0.22.4+0" [[deps.Ghostscript_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Zlib_jll"] git-tree-sha1 = "38044a04637976140074d0b0621c1edf0eb531fd" -registries = "General" uuid = "61579ee1-b43e-5ca0-a5da-69d92c66a64b" version = "9.55.1+0" [[deps.Giflib_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "6570366d757b50fabae9f4315ad74d2e40c0560a" -registries = "General" uuid = "59f7168a-df46-5410-90c8-f2779963d0ec" version = "5.2.3+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] git-tree-sha1 = "24f6def62397474a297bfcec22384101609142ed" -registries = "General" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" version = 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"b842cbff3f44804a84fda409745cc8f04c029a20" -registries = "General" uuid = "1d092043-8f09-5a30-832f-7509e371ab51" version = "0.1.6" [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] git-tree-sha1 = "ec1debd61c300961f98064cfb21287613ad7f303" -registries = "General" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" version = "2025.2.0+0" @@ -2146,7 +1992,6 @@ version = "1.11.0" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] git-tree-sha1 = "48922d06068130f87e43edef52382e6a94305ae6" -registries = "General" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" version = "0.16.3" @@ -2159,41 +2004,52 @@ version = "0.16.3" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.IntervalSets]] -git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" -registries = "General" +git-tree-sha1 = 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= "General" +git-tree-sha1 = "d22e8bdb3f03c300a103ff23c0dd5a654c6701de" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.6" +version = "0.2.7" [[deps.IterTools]] git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" -registries = "General" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" -registries = "General" uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLD2]] -deps = ["ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] -git-tree-sha1 = "941f87a0ae1b14d1ac2fa57245425b23a9d7a516" -registries = "General" +deps = ["ChunkCodecCore", "ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] +git-tree-sha1 = "9ce2e7c49ae4a7035b7d60db3a553b1f6c16875d" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.6.4" +version = "0.6.7" weakdeps = ["UnPack"] [deps.JLD2.extensions] @@ -2202,23 +2058,20 @@ weakdeps = ["UnPack"] [[deps.JLFzf]] deps = ["REPL", "Random", "fzf_jll"] git-tree-sha1 = "82f7acdc599b65e0f8ccd270ffa1467c21cb647b" -registries = "General" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" version = "0.1.11" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] git-tree-sha1 = "7204148362dafe5fe6a273f855b8ccbe4df8173e" -registries = "General" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" version = "1.8.0" [[deps.JSON]] deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] -git-tree-sha1 = "c89d196f5ffb64bfbf80985b699ea913b0d2c211" -registries = "General" +git-tree-sha1 = "9939eb6f799a963b3392ac4a1d49d3fc0646eb80" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "1.6.1" +version = "1.11.0" [deps.JSON.extensions] JSONArrowExt = ["ArrowTypes"] @@ -2229,14 +2082,12 @@ version = "1.6.1" [[deps.JpegTurbo]] deps = ["CEnum", "FileIO", "ImageCore", "JpegTurbo_jll", "TOML"] git-tree-sha1 = "9496de8fb52c224a2e3f9ff403947674517317d9" -registries = "General" uuid = "b835a17e-a41a-41e7-81f0-2f016b05efe0" version = "0.1.6" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" -registries = "General" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" version = "3.1.5+0" @@ -2248,41 +2099,35 @@ version = "1.12.0" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTA", "Interpolations", "StatsBase"] git-tree-sha1 = "9eda8292dd3268b3b7ec9df21bbfac24e177ec52" -registries = "General" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" version = "0.6.12" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "059aabebaa7c82ccb853dd4a0ee9d17796f7e1bc" -registries = "General" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" -registries = "General" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" -registries = "General" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" -registries = "General" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.4.0" [[deps.Latexify]] deps = ["Format", "Ghostscript_jll", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] git-tree-sha1 = "44f93c47f9cd6c7e431f2f2091fcba8f01cd7e8f" -registries = "General" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.16.10" @@ -2301,29 +2146,9 @@ version = "0.16.10" [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" -registries = "General" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" version = "0.1.17" -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "405e938379dbbdb24c0d93bd5b9600ecce03d11c" -registries = "General" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.9.10" - - [deps.LazyArrays.extensions] - LazyArraysBandedMatricesExt = "BandedMatrices" - LazyArraysBlockArraysExt = "BlockArrays" - LazyArraysBlockBandedMatricesExt = "BlockBandedMatrices" - LazyArraysStaticArraysExt = "StaticArrays" - - [deps.LazyArrays.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -2331,19 +2156,18 @@ version = "1.11.0" [[deps.LazyModules]] git-tree-sha1 = "a560dd966b386ac9ae60bdd3a3d3a326062d3c3e" -registries = "General" uuid = "8cdb02fc-e678-4876-92c5-9defec4f444e" version = "0.3.1" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "1.0.0" +version = "0.6.4" [[deps.LibCURL_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "LibSSH2_jll", "Libdl", "OpenSSL_jll", "Zlib_jll", "Zstd_jll", "nghttp2_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.18.0+1" +version = "8.15.0+0" [[deps.LibGit2]] deps = ["LibGit2_jll", "NetworkOptions", "Printf", "SHA"] @@ -2351,14 +2175,14 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" version = "1.11.0" [[deps.LibGit2_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "LibSSH2_jll", "Libdl", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.9.1+0" +version = "1.9.0+0" [[deps.LibSSH2_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl", "OpenSSL_jll", "Zlib_jll"] +deps = ["Artifacts", "Libdl", "OpenSSL_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.11.103+0" +version = "1.11.3+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -2367,68 +2191,53 @@ version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "c8da7e6a91781c41a863611c7e966098d783c57a" -registries = "General" uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" version = "3.4.7+0" [[deps.Libglvnd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll"] git-tree-sha1 = "d36c21b9e7c172a44a10484125024495e2625ac0" -registries = "General" uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" version = "1.7.1+1" [[deps.Libiconv_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "be484f5c92fad0bd8acfef35fe017900b0b73809" -registries = "General" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" -registries = "General" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] git-tree-sha1 = "f04133fe05eff1667d2054c53d59f9122383fe05" -registries = "General" uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" -registries = "General" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" version = "2.42.0+0" -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] -git-tree-sha1 = "cef1ba655e8c1f65af9d96c4fffe18bf1a3a3291" -registries = "General" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.7.1" - [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -version = "1.13.0" +version = "1.12.0" [[deps.LittleCMS_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll"] git-tree-sha1 = "38928f7999753af13d4e13966ae15958ff3a917a" -registries = "General" uuid = "d3a379c0-f9a3-5b72-a4c0-6bf4d2e8af0f" version = "2.19.1+0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] git-tree-sha1 = "13ca9e2586b89836fd20cccf56e57e2b9ae7f38f" -registries = "General" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" version = "0.3.29" @@ -2449,14 +2258,12 @@ version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] git-tree-sha1 = "f00544d95982ea270145636c181ceda21c4e2575" -registries = "General" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.2.0" [[deps.LoopVectorization]] deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] git-tree-sha1 = "514e8475e33c6faf3155efee5f3c10d9e65a11ab" -registries = "General" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" version = "0.12.174" @@ -2473,32 +2280,27 @@ version = "0.12.174" [[deps.MIMEs]] git-tree-sha1 = "c64d943587f7187e751162b3b84445bbbd79f691" -registries = "General" uuid = "6c6e2e6c-3030-632d-7369-2d6c69616d65" version = "1.1.0" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] git-tree-sha1 = "282cadc186e7b2ae0eeadbd7a4dffed4196ae2aa" -registries = "General" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" version = "2025.2.0+0" [[deps.MacroTools]] git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" -registries = "General" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.16" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" -registries = "General" uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" version = "0.1.8" [[deps.MappedArrays]] git-tree-sha1 = "0ee4497a4e80dbd29c058fcee6493f5219556f40" -registries = "General" uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" version = "0.4.3" @@ -2510,48 +2312,53 @@ version = "1.11.0" [[deps.MatrixCorrectionTools]] deps = ["LinearAlgebra"] git-tree-sha1 = "73f93b21eae5714c282396bfae9d9f13d6ad04b6" -registries = "General" uuid = "41f81499-25de-46de-b591-c3cfc21e9eaf" version = "1.2.0" [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] git-tree-sha1 = "8785729fa736197687541f7053f6d8ab7fc44f92" -registries = "General" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "ff69a2b1330bcb730b9ac1ab7dd680176f5896b8" -registries = "General" uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" version = "2.28.1010+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" -registries = "General" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" version = "0.3.3" +[[deps.MessagePassingRulesApproximations]] +deps = ["Compat", "FastCholesky", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra"] +git-tree-sha1 = "0904181cd2a25ed85da53a3426af17f0fb7bb193" +uuid = "36043009-14b3-4068-9fb9-f1e492c92d7d" +version = "1.0.0" + +[[deps.MessagePassingRulesBase]] +deps = ["BayesBase", "Compat", "FastCholesky", "IrrationalConstants", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "386ffd59dc3b21d3d36542c41f7b0326c821813f" +uuid = "4a5b64c7-30c9-4471-82f2-bbe8464b157d" +version = "1.1.2" + [[deps.MetaGraphs]] deps = ["Graphs", "JLD2", "Random"] git-tree-sha1 = "3a8f462a180a9d735e340f4e8d5f364d411da3a4" -registries = "General" uuid = "626554b9-1ddb-594c-aa3c-2596fe9399a5" version = "0.8.1" [[deps.MetaGraphsNext]] deps = ["Graphs", "JLD2", "SimpleTraits"] git-tree-sha1 = "1983a06112db00c54e171f5cff8788c8efbdae85" -registries = "General" uuid = "fa8bd995-216d-47f1-8a91-f3b68fbeb377" version = "0.7.5" [[deps.Missings]] deps = ["DataAPI"] git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" -registries = "General" uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" version = "1.2.0" @@ -2562,59 +2369,45 @@ version = "1.11.0" [[deps.MosaicViews]] deps = ["MappedArrays", "OffsetArrays", "PaddedViews", "StackViews"] git-tree-sha1 = "7b86a5d4d70a9f5cdf2dacb3cbe6d251d1a61dbe" -registries = "General" uuid = "e94cdb99-869f-56ef-bcf0-1ae2bcbe0389" version = "0.3.4" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2026.8.13" +version = "2025.11.4" [[deps.MuladdMacro]] deps = ["PrecompileTools"] git-tree-sha1 = "21f3ab73a0bc592a809713fd97cfd3cb5669153e" -registries = "General" uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" version = "0.2.5" [[deps.MultivariateStats]] deps = ["Arpack", "Distributions", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] git-tree-sha1 = "7c3ff68a904d0f7404e5d2f7f5bc667934d8d616" -registries = "General" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" version = "0.10.4" -[[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "FiniteDiff", "LinearAlgebra"] -git-tree-sha1 = "b3f76b463c7998473062992b246045e6961a074e" -registries = "General" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "8.0.0" - [[deps.NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "dbd2e8cd2c1c27f0b584f6661b4309609c5a685e" -registries = "General" +git-tree-sha1 = "676c0f1c1c34224d6869675047a54b42fdc7b8c5" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.1.4" +version = "1.1.5" [[deps.NamedTupleTools]] git-tree-sha1 = "90914795fc59df44120fe3fff6742bb0d7adb1d0" -registries = "General" uuid = "d9ec5142-1e00-5aa0-9d6a-321866360f50" version = "0.14.3" [[deps.NearestNeighbors]] deps = ["AbstractTrees", "Distances", "StaticArrays"] git-tree-sha1 = "e2c3bba08dd6dedfe17a17889131b885b8c082f0" -registries = "General" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" version = "0.4.27" [[deps.Netpbm]] deps = ["FileIO", "ImageCore", "ImageMetadata"] git-tree-sha1 = "d92b107dbb887293622df7697a2223f9f8176fcd" -registries = "General" uuid = "f09324ee-3d7c-5217-9330-fc30815ba969" version = "1.1.1" @@ -2624,13 +2417,11 @@ version = "1.3.0" [[deps.Observables]] git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" -registries = "General" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" version = "0.5.5" [[deps.OffsetArrays]] git-tree-sha1 = "117432e406b5c023f665fa73dc26e79ec3630151" -registries = "General" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" version = "1.17.0" weakdeps = ["Adapt"] @@ -2641,47 +2432,42 @@ weakdeps = ["Adapt"] [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "b6aa4566bb7ae78498a5e68943863fa8b5231b59" -registries = "General" uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" version = "1.3.6+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.30+0" +version = "0.3.29+0" [[deps.OpenEXR]] deps = ["Colors", "FileIO", "OpenEXR_jll"] git-tree-sha1 = "97db9e07fe2091882c765380ef58ec553074e9c7" -registries = "General" uuid = "52e1d378-f018-4a11-a4be-720524705ac7" version = "0.3.3" [[deps.OpenEXR_jll]] deps = ["Artifacts", "Imath_jll", "JLLWrappers", "Libdl", "Zlib_jll"] git-tree-sha1 = "0d621a4beb5e48d195f907c3c5b0bea285d9ff9d" -registries = "General" uuid = "18a262bb-aa17-5467-a713-aee519bc75cb" version = "3.4.13+0" [[deps.OpenJpeg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libtiff_jll", "LittleCMS_jll", "libpng_jll"] git-tree-sha1 = "215a6666fee6d6b3a6e75f2cc22cb767e2dd393a" -registries = "General" uuid = "643b3616-a352-519d-856d-80112ee9badc" version = "2.5.5+0" [[deps.OpenLibm_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" version = "0.8.7+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "1d1aaa7d449b58415f97d2839c318b70ffb525a0" -registries = "General" +git-tree-sha1 = "5caab1056e0734b87f62ae3a3b520d47d3e994e8" uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.6.1" +version = "1.7.0" [[deps.OpenSSL_jll]] deps = ["Artifacts", "Libdl"] @@ -2691,47 +2477,30 @@ version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335" -registries = "General" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.6+0" -[[deps.Optim]] -deps = ["ADTypes", "EnumX", "FillArrays", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "PositiveFactorizations", "Printf", "SparseArrays", "Statistics"] -git-tree-sha1 = "6fe140aab6c042a73c9d5dc280b87b32eee44f9f" -registries = "General" -uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "2.2.1" - - [deps.Optim.extensions] - OptimMOIExt = "MathOptInterface" - - [deps.Optim.weakdeps] - MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" - [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "e2bb57a313a74b8104064b7efd01406c0a50d2ff" -registries = "General" uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.6.1+0" [[deps.OrderedCollections]] git-tree-sha1 = "94ba93778373a53bfd5a0caaf7d809c445292ff4" -registries = "General" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.2" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.46.0+0" +version = "10.44.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a680e58292816791211582a4d8e44353835e991f" -registries = "General" +git-tree-sha1 = "123266c25174ef6c8d4718920abc206452cf8de6" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.38" +version = "0.11.41" weakdeps = ["StatsBase"] [deps.PDMats.extensions] @@ -2740,49 +2509,43 @@ weakdeps = ["StatsBase"] [[deps.PNGFiles]] deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"] git-tree-sha1 = "32b657a0d57c310a1a172bfc8c8cf68c5e674323" -registries = "General" uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883" version = "0.4.5" [[deps.PaddedViews]] deps = ["OffsetArrays"] git-tree-sha1 = "0fac6313486baae819364c52b4f483450a9d793f" -registries = "General" uuid = "5432bcbf-9aad-5242-b902-cca2824c8663" version = "0.5.12" [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" -registries = "General" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" version = "1.57.1+0" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" -registries = "General" uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" version = "0.12.3" [[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "32a4e09c5f29402573d673901778a0e03b0807b9" -registries = "General" +deps = ["Dates", "PrecompileTools"] +git-tree-sha1 = "663e8b48b789916221e0765393b289ca6c88f24e" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.6" +version = "3.0.0" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] git-tree-sha1 = "e4a6721aa89e62e5d4217c0b21bd714263779dda" -registries = "General" uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.46.4+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "Zstd_jll", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.13.0" +version = "1.12.1" weakdeps = ["REPL"] [deps.Pkg.extensions] @@ -2791,28 +2554,24 @@ weakdeps = ["REPL"] [[deps.PkgVersion]] deps = ["Pkg"] git-tree-sha1 = "f9501cc0430a26bc3d156ae1b5b0c1b47af4d6da" -registries = "General" uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688" version = "0.3.3" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] git-tree-sha1 = "41031ef3a1be6f5bbbf3e8073f210556daeae5ca" -registries = "General" uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" version = "3.3.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "StableRNGs", "Statistics"] git-tree-sha1 = "26ca162858917496748aad52bb5d3be4d26a228a" -registries = "General" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" version = "1.4.4" [[deps.Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "Unzip"] git-tree-sha1 = "cb20a4eacda080e517e4deb9cfb6c7c518131265" -registries = "General" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" version = "1.41.6" @@ -2833,35 +2592,24 @@ version = "1.41.6" [[deps.PlutoTeachingTools]] deps = ["Downloads", "HypertextLiteral", "Latexify", "Markdown", "PlutoUI"] git-tree-sha1 = "90b41ced6bacd8c01bd05da8aed35c5458891749" -registries = "General" uuid = "661c6b06-c737-4d37-b85c-46df65de6f69" version = "0.4.7" [[deps.PlutoUI]] deps = ["AbstractPlutoDingetjes", "Base64", "ColorTypes", "Dates", "Downloads", "FixedPointNumbers", "Hyperscript", "HypertextLiteral", "IOCapture", "InteractiveUtils", "Logging", "MIMEs", "Markdown", "Random", "Reexport", "URIs", "UUIDs"] git-tree-sha1 = "e189d0623e7ce9c37389bac17e80aac3b0302e75" -registries = "General" uuid = "7f904dfe-b85e-4ff6-b463-dae2292396a8" version = "0.7.83" -[[deps.PolyaGammaHybridSamplers]] -deps = ["Distributions", "Random", "SpecialFunctions", "StatsFuns"] -git-tree-sha1 = "9f6139650ff57f9d8528cd809ebc604c7e9738b1" -registries = "General" -uuid = "c636ee4f-4591-4d8c-9fae-2dea21daa433" -version = "1.2.6" - [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" -registries = "General" uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" version = "0.2.2" [[deps.Polynomials]] deps = ["LinearAlgebra", "OrderedCollections", "Setfield", "SparseArrays"] git-tree-sha1 = "2d99b4c8a7845ab1342921733fa29366dae28b24" -registries = "General" uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" version = "4.1.1" @@ -2882,28 +2630,24 @@ version = "4.1.1" [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" -registries = "General" uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" version = "0.2.4" [[deps.PrecompileTools]] deps = ["Preferences"] git-tree-sha1 = "edbeefc7a4889f528644251bdb5fc9ab5348bc2c" -registries = "General" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" version = "1.3.4" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "8b770b60760d4451834fe79dd483e318eee709c4" -registries = "General" +git-tree-sha1 = "aef1987d90dcc2e2cbd919ad10b2d25bcce4f418" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.5.2" +version = "1.6.1" [[deps.Primes]] deps = ["IntegerMathUtils"] git-tree-sha1 = "25cdd1d20cd005b52fc12cb6be3f75faaf59bb9b" -registries = "General" uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" version = "0.5.7" @@ -2913,64 +2657,63 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" version = "1.11.0" [[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "fbb92c6c56b34e1a2c4c36058f68f332bec840e7" -registries = "General" +deps = ["Printf"] +git-tree-sha1 = "ce5ba3edfdeba107a721748d53b5f5887f415853" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.11.0" +version = "1.13.0" + + [deps.ProgressMeter.extensions] + ProgressMeterDistributedExt = "Distributed" + ProgressMeterIJuliaExt = "IJulia" + + [deps.ProgressMeter.weakdeps] + Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" -registries = "General" uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" version = "1.4.0" [[deps.QOI]] deps = ["ColorTypes", "FileIO", "FixedPointNumbers"] git-tree-sha1 = "472daaa816895cb7aee81658d4e7aec901fa1106" -registries = "General" uuid = "4b34888f-f399-49d4-9bb3-47ed5cae4e65" version = "1.0.2" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] git-tree-sha1 = "144895f6166994730ee7ff8113b981fc360638f1" -registries = "General" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" version = "6.10.2+2" [[deps.Qt6Declarative_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll", "Qt6Svg_jll"] git-tree-sha1 = "159d253ab126d5b29230cf53521899bea4ef4648" -registries = "General" uuid = "629bc702-f1f5-5709-abd5-49b8460ea067" version = "6.10.2+2" [[deps.Qt6ShaderTools_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] git-tree-sha1 = "4d85eedf69d875982c46643f6b4f66919d7e157b" -registries = "General" uuid = "ce943373-25bb-56aa-8eca-768745ed7b5a" version = "6.10.2+1" [[deps.Qt6Svg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] git-tree-sha1 = "81587ff5ff25a4e1115ce191e36285ede0334c9d" -registries = "General" uuid = "6de9746b-f93d-5813-b365-ba18ad4a9cf3" version = "6.10.2+0" [[deps.Qt6Wayland_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6Declarative_jll"] git-tree-sha1 = "672c938b4b4e3e0169a07a5f227029d4905456f2" -registries = "General" uuid = "e99dba38-086e-5de3-a5b1-6e4c66e897c3" version = "6.10.2+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" -registries = "General" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.11.3" @@ -2983,12 +2726,11 @@ version = "2.11.3" [[deps.Quaternions]] deps = ["LinearAlgebra", "Random", "RealDot"] git-tree-sha1 = "4d8c1b7c3329c1885b857abb50d08fa3f4d9e3c8" -registries = "General" uuid = "94ee1d12-ae83-5a48-8b1c-48b8ff168ae0" version = "0.7.7" [[deps.REPL]] -deps = ["Base64", "Dates", "FileWatching", "InteractiveUtils", "JuliaSyntaxHighlighting", "Markdown", "Sockets", "StyledStrings", "Unicode"] +deps = ["InteractiveUtils", "JuliaSyntaxHighlighting", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" version = "1.11.0" @@ -2999,14 +2741,12 @@ version = "1.11.0" [[deps.RangeArrays]] git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" -registries = "General" uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" version = "0.3.2" [[deps.Ratios]] deps = ["Requires"] git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" -registries = "General" uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" version = "0.4.5" weakdeps = ["FixedPointNumbers"] @@ -3015,97 +2755,105 @@ weakdeps = ["FixedPointNumbers"] RatiosFixedPointNumbersExt = "FixedPointNumbers" [[deps.ReactiveMP]] -deps = ["BayesBase", "DiffResults", "Distributions", "DomainIntegrals", "DomainSets", "ExponentialFamily", "FastCholesky", "FastGaussQuadrature", "FixedArguments", "ForwardDiff", "HCubature", "LazyArrays", "LinearAlgebra", "MacroTools", "MatrixCorrectionTools", "Optim", "PolyaGammaHybridSamplers", "PositiveFactorizations", "Random", "Rocket", "SpecialFunctions", "StatsBase", "StatsFuns", "TinyHugeNumbers", "Tullio", "TupleTools", "UUIDs"] -git-tree-sha1 = "e495df252e8564d65b215a2005684fe3a0deda93" -registries = "General" +deps = ["BayesBase", "Compat", "Distributions", "LinearAlgebra", "MacroTools", "MessagePassingRulesBase", "Random", "Rocket", "TinyHugeNumbers", "TupleTools", "UUIDs"] +git-tree-sha1 = "944722ce6bfb8b1cdfb05a123afe9fe397fbd725" uuid = "a194aa59-28ba-4574-a09c-4a745416d6e3" -version = "6.3.0" +version = "7.0.0" [deps.ReactiveMP.extensions] - ReactiveMPOptimisersExt = "Optimisers" - ReactiveMPProjectionExt = "ExponentialFamilyProjection" + ReactiveMPReactantExt = "Reactant" [deps.ReactiveMP.weakdeps] - ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" - Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" [[deps.RealDot]] deps = ["LinearAlgebra"] git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" -registries = "General" uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" version = "0.1.0" [[deps.RecipesBase]] deps = ["PrecompileTools"] git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" -registries = "General" uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" version = "1.3.4" 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version = "1.3.1" [[deps.Rmath]] deps = ["Random", "Rmath_jll"] git-tree-sha1 = "5b3d50eb374cea306873b371d3f8d3915a018f0b" -registries = "General" uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.9.0" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8" -registries = "General" +git-tree-sha1 = "6d40b2fe70437b01397d2a4d5b020008da4e7019" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.5.1+0" +version = "0.5.2+0" [[deps.Rocket]] deps = ["DataStructures", "Sockets", "Unrolled"] -git-tree-sha1 = "12c8d9bb85176acf23057b679a894ea59eb922c8" -registries = "General" +git-tree-sha1 = "ad8f448adaaedd25803f12bcff8d59a8a1dd8bbb" uuid = "df971d30-c9d6-4b37-b8ff-e965b2cb3a40" -version = "1.9.0" +version = "1.11.0" weakdeps = ["Observables"] [deps.Rocket.extensions] RocketObservablesExt = "Observables" +[[deps.Roots]] +deps = ["Accessors", "CommonSolve", "Printf"] +git-tree-sha1 = "e6ffa7bd4f8d0b8744d18f219304738d952f9a37" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "3.0.11" + + [deps.Roots.extensions] + RootsChainRulesCoreExt = "ChainRulesCore" + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + RootsUnitfulExt = "Unitful" + + [deps.Roots.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.Rotations]] deps = ["LinearAlgebra", "Quaternions", "Random", "StaticArrays"] git-tree-sha1 = "5680a9276685d392c87407df00d57c9924d9f11e" -registries = "General" uuid = "6038ab10-8711-5258-84ad-4b1120ba62dc" version = "1.7.1" weakdeps = ["RecipesBase"] @@ -3114,70 +2862,67 @@ weakdeps = ["RecipesBase"] RotationsRecipesBaseExt = "RecipesBase" [[deps.RxInfer]] -deps = ["Base64", "BayesBase", "DataStructures", "Dates", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "Optim", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SparseArrays", "Static", "Statistics", "TupleTools", "UUIDs"] -git-tree-sha1 = "4098a13ad0db656071d6e71ff085cbec69300412" -registries = "General" +deps = ["AutoregressiveMessagePassingRules", "Base64", "BayesBase", "DataStructures", "Dates", "DeltaMessagePassingRules", "DiscreteTransitionMessagePassingRules", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GCVMessagePassingRules", "GaussianCouplingMessagePassingRules", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "PrecompileTools", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SoftDotMessagePassingRules", "SparseArrays", "StandardMessagePassingRules", "Static", "Statistics", "TupleTools", "UUIDs"] +git-tree-sha1 = "cbb0595f742056ccab20beba5cf2a1253294c6dd" uuid = "86711068-29c9-4ff7-b620-ae75d7495b3d" -version = "5.5.0" +version = "6.1.0" [deps.RxInfer.extensions] + OptimExt = "Optim" PrettyTablesExt = "PrettyTables" ProjectionExt = "ExponentialFamilyProjection" + ReactantExt = "Reactant" TensorBoardLoggerExt = "TensorBoardLogger" [deps.RxInfer.weakdeps] ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "1.0.0" +version = "0.7.0" [[deps.SIMD]] deps = ["PrecompileTools"] git-tree-sha1 = "e24dc23107d426a096d3eae6c165b921e74c18e4" -registries = "General" uuid = "fdea26ae-647d-5447-a871-4b548cad5224" version = "3.7.2" [[deps.SIMDTypes]] git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" -registries = "General" uuid = "94e857df-77ce-4151-89e5-788b33177be4" version = "0.1.0" [[deps.SLEEFPirates]] deps = ["IfElse", "Static", "VectorizationBase"] git-tree-sha1 = "72312aa278823c0e99ce31186e22d917d2d11f99" -registries = "General" uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" version = "0.6.46" [[deps.SciMLPublic]] -git-tree-sha1 = "912a1a941afb2a232183a485d86a437a25f88520" -registries = "General" +deps = ["PrecompileTools"] +git-tree-sha1 = "74685afb51732a464fbce79a72708f7c4203ceb7" uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" -version = "1.2.0" +version = "1.3.0" [[deps.ScopedValues]] deps = ["HashArrayMappedTries", "Logging"] git-tree-sha1 = "67a144433c4ce877ee6d1ada69a124d6b1ecf7be" -registries = "General" uuid = "7e506255-f358-4e82-b7e4-beb19740aa63" version = "1.6.2" [[deps.Scratch]] deps = ["Dates"] git-tree-sha1 = "9b81b8393e50b7d4e6d0a9f14e192294d3b7c109" -registries = "General" uuid = "6c6a2e73-6563-6170-7368-637461726353" version = "1.3.0" [[deps.SentinelArrays]] deps = ["Dates", "Random"] git-tree-sha1 = "084c47c7c5ce5cfecefa0a98dff69eb3646b5a80" -registries = "General" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" version = "1.4.10" @@ -3188,7 +2933,6 @@ version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] git-tree-sha1 = "c5391c6ace3bc430ca630251d02ea9687169ca68" -registries = "General" uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" version = "1.1.2" @@ -3200,34 +2944,29 @@ version = "1.11.0" [[deps.Showoff]] deps = ["Dates", "Grisu"] git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" -registries = "General" uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" version = "1.0.3" [[deps.SimpleBufferStream]] git-tree-sha1 = "f305871d2f381d21527c770d4788c06c097c9bc1" -registries = "General" uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" version = "1.2.0" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] git-tree-sha1 = "7ddb0b49c109481b046972c0e4ab02b2127d6a75" -registries = "General" uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" version = "0.9.6" [[deps.SimpleWeightedGraphs]] deps = ["Graphs", "LinearAlgebra", "Markdown", "SparseArrays"] git-tree-sha1 = "749a2b719ec7f34f280c0d97ac3dab5c89818631" -registries = "General" uuid = "47aef6b3-ad0c-573a-a1e2-d07658019622" version = "1.5.1" [[deps.Sixel]] deps = ["Dates", "FileIO", "ImageCore", "IndirectArrays", "OffsetArrays", "REPL", "libsixel_jll"] git-tree-sha1 = "0494aed9501e7fb65daba895fb7fd57cc38bc743" -registries = "General" uuid = "45858cf5-a6b0-47a3-bbea-62219f50df47" version = "0.1.5" @@ -3235,24 +2974,28 @@ version = "0.1.5" uuid = "6462fe0b-24de-5631-8697-dd941f90decc" version = "1.11.0" +[[deps.SoftDotMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "8ccebfa9b93d9908178cc0e97c4f4a480708740d" +uuid = "fdfab25d-afbd-4817-865a-cd280c067f5e" +version = "1.0.0" + [[deps.SortingAlgorithms]] deps = ["DataStructures"] git-tree-sha1 = "13cd91cc9be159e3f4d95b857fa2aa383b53772a" -registries = "General" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" version = "1.2.3" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.13.0" +version = "1.12.0" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "6547cbdd8ce32efba0d21c5a40fa96d1a3548f9f" -registries = "General" +git-tree-sha1 = "429071b23f4c9a13fb6582f807cc2ef454082408" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.8.0" +version = "2.9.0" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -3261,28 +3004,30 @@ weakdeps = ["ChainRulesCore"] [[deps.StableRNGs]] deps = ["Random"] git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" -registries = "General" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" [[deps.StackViews]] deps = ["OffsetArrays"] git-tree-sha1 = "be1cf4eb0ac528d96f5115b4ed80c26a8d8ae621" -registries = "General" uuid = "cae243ae-269e-4f55-b966-ac2d0dc13c15" version = "0.1.2" +[[deps.StandardMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "LogExpFunctions", "MatrixCorrectionTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "SpecialFunctions", "StatsFuns"] +git-tree-sha1 = "ca7e44b8d9c49483dfab3fc5e91346d032cb7d45" +uuid = "d166223a-7879-43b1-add3-64af0a178e9e" +version = "1.0.0" + [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "cbc2fed5b692d12e199397471ba6c5988f69b629" -registries = "General" +git-tree-sha1 = "474a5283ad435618090122872eea6a8165ea6bcf" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.4.1" +version = "1.4.6" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] git-tree-sha1 = "2a635e15d5035c53b345077c947f31ff91744078" -registries = "General" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" version = "1.10.0" weakdeps = ["OffsetArrays", "StaticArrays"] @@ -3293,10 +3038,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" -registries = "General" +git-tree-sha1 = "8a8a52f887f38d44014e24ee46b8a7311c625f6d" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.18" +version = "1.9.24" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -3305,16 +3049,14 @@ weakdeps = ["ChainRulesCore", "Statistics"] [[deps.StaticArraysCore]] git-tree-sha1 = "6ab403037779dae8c514bad259f32a447262455a" -registries = "General" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] deps = ["LinearAlgebra"] -git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" -registries = "General" +git-tree-sha1 = "e2b53ce13a53367e96601081e33d34746b571bad" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.11.1" +version = "1.11.5" weakdeps = ["SparseArrays"] [deps.Statistics.extensions] @@ -3323,52 +3065,48 @@ weakdeps = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] git-tree-sha1 = "178ed29fd5b2a2cfc3bd31c13375ae925623ff36" -registries = "General" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" version = "1.8.0" [[deps.StatsBase]] deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "e4d7a1a0edc20af42689ea6f4f3587a2175d50ee" -registries = "General" +git-tree-sha1 = "adb9da019510162e67a4493fc235c23203d8b09e" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.12" +version = "0.34.13" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" -registries = "General" +git-tree-sha1 = "0aa97471d55945556e8d2859568b8317cef98351" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.5.2" +version = "1.5.3" +weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" - [deps.StatsFuns.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" - [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] git-tree-sha1 = "88cf3587711d9ad0a55722d339a013c4c56c5bbc" -registries = "General" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" version = "0.15.8" [[deps.StructUtils]] deps = ["Dates", "UUIDs"] -git-tree-sha1 = "82bee338d650aa515f31866c460cb7e3bcef90b8" -registries = "General" +git-tree-sha1 = "ad435e30854ed0f50f4b7f67edd71664afecc5d8" uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" -version = "2.8.2" +version = "2.10.0" [deps.StructUtils.extensions] + StructUtilsDataFramesExt = ["DataFrames"] + StructUtilsLazilyInitializedFieldsExt = ["LazilyInitializedFields"] StructUtilsMeasurementsExt = ["Measurements"] StructUtilsStaticArraysCoreExt = ["StaticArraysCore"] StructUtilsTablesExt = ["Tables"] [deps.StructUtils.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazilyInitializedFields = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" @@ -3382,9 +3120,9 @@ deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.10.1+0" +version = "7.8.3+2" [[deps.TOML]] deps = ["Dates"] @@ -3394,21 +3132,18 @@ version = "1.0.3" [[deps.TableOperations]] deps = ["SentinelArrays", "Tables", "Test"] git-tree-sha1 = "e383c87cf2a1dc41fa30c093b2a19877c83e1bc1" -registries = "General" uuid = "ab02a1b2-a7df-11e8-156e-fb1833f50b87" version = "1.2.0" [[deps.TableTraits]] deps = ["IteratorInterfaceExtensions"] git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -registries = "General" uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" -registries = "General" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" version = "1.12.1" @@ -3420,7 +3155,6 @@ version = "1.10.0" [[deps.TensorCore]] deps = ["LinearAlgebra"] git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" -registries = "General" uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" version = "0.1.1" @@ -3432,72 +3166,46 @@ version = "1.11.0" [[deps.ThreadingUtilities]] deps = ["ManualMemory"] git-tree-sha1 = "7c73336785b21f723f5b143f6e99cf6c43b37dc1" -registries = "General" uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" version = "0.5.6" [[deps.TiffImages]] deps = ["CodecZstd", "ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "PrecompileTools", "ProgressMeter", "SIMD", "UUIDs"] git-tree-sha1 = "9ca5f1f2d42f80df4b8c9f6ab5a64f438bbd9976" -registries = "General" uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" version = "0.11.9" [[deps.TiledIteration]] deps = ["OffsetArrays", "StaticArrayInterface"] git-tree-sha1 = "1176cc31e867217b06928e2f140c90bd1bc88283" -registries = "General" uuid = "06e1c1a7-607b-532d-9fad-de7d9aa2abac" version = "0.5.0" [[deps.TinyHugeNumbers]] -git-tree-sha1 = "83c6abf376718345a85c071b249ef6692a8936d4" -registries = "General" +git-tree-sha1 = "d5b24fd37550762d78280fb37c1800c3ea7e95cb" uuid = "783c9a47-75a3-44ac-a16b-f1ab7b3acf04" -version = "1.0.3" +version = "1.0.4" [[deps.TranscodingStreams]] git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" -registries = "General" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" version = "0.11.3" [[deps.Tricks]] git-tree-sha1 = "311349fd1c93a31f783f977a71e8b062a57d4101" -registries = "General" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.13" -[[deps.Tullio]] -deps = ["DiffRules", "LinearAlgebra", "Requires"] -git-tree-sha1 = "de0febfe1243e89f352abd4ca0e9de6c8e6190c5" -registries = "General" -uuid = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc" -version = "0.3.9" - - [deps.Tullio.extensions] - TullioCUDAExt = "CUDA" - TullioChainRulesCoreExt = "ChainRulesCore" - TullioFillArraysExt = "FillArrays" - TullioTrackerExt = "Tracker" - - [deps.Tullio.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.TupleTools]] -git-tree-sha1 = "41e43b9dc950775eac654b9f845c839cd2f1821e" -registries = "General" +git-tree-sha1 = "a1c7e924f746f0ebc792425e7d4d2ea5b4470697" uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" -version = "1.6.0" +version = "1.6.1" [[deps.URIs]] -git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" -registries = "General" +deps = ["Serialization"] +git-tree-sha1 = "0392e5e3c5327b90a487b0ff3e818c4aecd3660b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.6.1" +version = "1.7.1" [[deps.UUIDs]] deps = ["Random", "SHA"] @@ -3506,7 +3214,6 @@ version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" -registries = "General" uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" version = "1.0.2" @@ -3517,237 +3224,203 @@ version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" -registries = "General" uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" [[deps.Unrolled]] deps = ["MacroTools"] git-tree-sha1 = "6cc9d682755680e0f0be87c56392b7651efc2c7b" -registries = "General" uuid = "9602ed7d-8fef-5bc8-8597-8f21381861e8" version = "0.1.5" [[deps.Unzip]] git-tree-sha1 = 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"JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] git-tree-sha1 = "f233c83cad1fa0e70b7771e0e21b061a116f2763" -registries = "General" uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" version = "0.4.2+0" [[deps.Xorg_xkbcomp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] git-tree-sha1 = "801a858fc9fb90c11ffddee1801bb06a738bda9b" -registries = "General" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] git-tree-sha1 = "ed349d26affcacafbc7fc2941ace1fb98f71e715" -registries = "General" uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.47.0+1" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb" -registries = "General" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" version = "1.6.0+0" @@ -3757,35 +3430,32 @@ uuid = "83775a58-1f1d-513f-b197-d71354ab007a" version = "1.3.1+2" [[deps.Zstd_jll]] -deps = ["CompilerSupportLibraries_jll", "Libdl"] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.7+1" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" -registries = "General" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.14+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" -registries = "General" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" -registries = "General" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" -registries = "General" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" version = "0.17.4+0" @@ -3797,122 +3467,106 @@ version = "5.15.0+0" [[deps.libdecor_jll]] deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" -registries = "General" uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" version = "0.2.2+0" [[deps.libdrm_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libpciaccess_jll"] git-tree-sha1 = "63aac0bcb0b582e11bad965cef4a689905456c03" -registries = "General" uuid = "8e53e030-5e6c-5a89-a30b-be5b7263a166" version = "2.4.125+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" -registries = "General" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" version = "1.13.4+0" [[deps.libfdk_aac_jll]] deps = 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"Xorg_libX11_jll", "Xorg_libXext_jll", "Xorg_libXfixes_jll", "libdrm_jll"] git-tree-sha1 = "7dbf96baae3310fe2fa0df0ccbb3c6288d5816c9" -registries = "General" uuid = "9a156e7d-b971-5f62-b2c9-67348b8fb97c" version = "2.23.0+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" -registries = "General" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" version = "1.3.8+0" [[deps.libwebp_jll]] deps = ["Artifacts", "Giflib_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libglvnd_jll", "Libtiff_jll", "libpng_jll"] git-tree-sha1 = "4e4282c4d846e11dce56d74fa8040130b7a95cb3" -registries = "General" uuid = "c5f90fcd-3b7e-5836-afba-fc50a0988cb2" version = "1.6.0+0" [[deps.libzip_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "OpenSSL_jll", "XZ_jll", "Zlib_jll", "Zstd_jll"] git-tree-sha1 = "86addc139bca85fdf9e7741e10977c45785727b7" -registries = "General" uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1" version = "1.11.3+0" [[deps.mtdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" -registries = "General" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" version = "1.1.7+0" [[deps.nghttp2_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.67.1+0" +version = "1.64.0+1" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] git-tree-sha1 = "da8c1f6eee04831f14edcfa5dae611d309807e57" -registries = "General" uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" version = "2022.3.0+0" [[deps.p7zip_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.8.2+0" +version = "17.7.0+0" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" -registries = "General" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" version = "10164.0.1+0" [[deps.x265_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" -registries = "General" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" version = "4.1.0+0" [[deps.xkbcommon_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" -registries = "General" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" version = "1.13.0+0" diff --git a/lectures/Factor Graphs.jl b/lectures/Factor Graphs.jl index c3c6d0e5..cd126874 100644 --- a/lectures/Factor Graphs.jl +++ b/lectures/Factor Graphs.jl @@ -1261,7 +1261,7 @@ StableRNGs = "860ef19b-820b-49d6-a774-d7a799459cd3" BmlipTeachingTools = "~1.4.1" LaTeXStrings = "~1.4.0" Plots = "~1.41.6" -RxInfer = "~5.5.0" +RxInfer = "~6.1.0" StableRNGs = "~1.0.4" """ @@ -1269,40 +1269,38 @@ StableRNGs = "~1.0.4" PLUTO_MANIFEST_TOML_CONTENTS = """ # This file is machine-generated - editing it directly is not advised -julia_version = "1.12.6" +julia_version = "1.12.7" manifest_format = "2.0" -project_hash = "39a584738204d043408a75b4470fe51a33af57a3" - -[[deps.ADTypes]] -git-tree-sha1 = "d9aaef7c63466eee4de23b4d9dad03629df54bea" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.22.1" - - [deps.ADTypes.extensions] - ADTypesChainRulesCoreExt = "ChainRulesCore" - ADTypesConstructionBaseExt = "ConstructionBase" - ADTypesEnzymeCoreExt = "EnzymeCore" - - [deps.ADTypes.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" +project_hash = "8a3b6a58c21e87f5e1aa99af93c0a2be888d2c15" [[deps.AbstractPlutoDingetjes]] git-tree-sha1 = "6c3913f4e9bdf6ba3c08041a446fb1332716cbc2" uuid = "6e696c72-6542-2067-7265-42206c756150" version = "1.4.0" -[[deps.Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "daa72978cd7a624246e894a4f4f067706d4e17e2" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.7.0" -weakdeps = ["SparseArrays", "StaticArrays"] +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "7063ad1083578215c7c4bf410368150abe8d5524" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.45" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" - [deps.Adapt.extensions] - AdaptSparseArraysExt = "SparseArrays" - AdaptStaticArraysExt = "StaticArrays" + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.AliasTables]] deps = ["PtrArrays", "Random"] @@ -1320,47 +1318,11 @@ git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" uuid = "ec485272-7323-5ecc-a04f-4719b315124d" version = "0.4.0" -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "3d0cabd25fab32390e3bcb82cd67e700aebd9816" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.25.0" - - [deps.ArrayInterface.extensions] - ArrayInterfaceAMDGPUExt = "AMDGPU" - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] - ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" - ArrayInterfaceChainRulesExt = "ChainRules" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceMetalExt = "Metal" - ArrayInterfaceReverseDiffExt = "ReverseDiff" - ArrayInterfaceSparseArraysExt = "SparseArrays" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" - ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "e0b47732a192dd59b9d079a06d04235e2f833963" +git-tree-sha1 = "b4a2d2dfcaedf8f0cb93a970c4ccba6f632f14cc" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.12.2" +version = "1.15.1" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -1370,15 +1332,21 @@ weakdeps = ["SparseArrays"] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" version = "1.11.0" +[[deps.AutoregressiveMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "4c9f3f4edd4580e385535bce39a6a39f8f1a6aa9" +uuid = "bbb8872a-15f9-43f6-924d-37f12d04ed53" +version = "1.0.0" + [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" version = "1.11.0" [[deps.BayesBase]] deps = ["Distributions", "DomainSets", "LinearAlgebra", "Random", "SpecialFunctions", "StaticArrays", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "e644fb61dcc7b0df1be931230d2b9bc3a96d912f" +git-tree-sha1 = "cadec5ad37b53e1198f36524b30297fc0df98aae" uuid = "b4ee3484-f114-42fe-b91c-797d54a0c67e" -version = "1.5.9" +version = "1.5.12" weakdeps = ["FastCholesky"] [deps.BayesBase.extensions] @@ -1397,9 +1365,9 @@ version = "1.1.5" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "0f606a9894e2bcda541ceb82a91a13c5d450ed97" +git-tree-sha1 = "876d4c4b941cc8b079da79c88d9c2dee52b9dd13" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "1.9.3" +version = "1.10.3" [deps.BlockArrays.extensions] BlockArraysAdaptExt = "Adapt" @@ -1428,15 +1396,15 @@ uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.18.7+0" [[deps.ChunkCodecCore]] -git-tree-sha1 = "1a3ad7e16a321667698a19e77362b35a1e94c544" +git-tree-sha1 = "3496e2b359c27793d12bec54ec94be7983a6ceb2" uuid = "0b6fb165-00bc-4d37-ab8b-79f91016dbe1" -version = "1.0.1" +version = "1.0.2" [[deps.ChunkCodecLibZlib]] deps = ["ChunkCodecCore", "Zlib_jll"] -git-tree-sha1 = "cee8104904c53d39eb94fd06cbe60cb5acde7177" +git-tree-sha1 = "d4101e848e8d3f585d61d244c2fe0c80a70e6b3b" uuid = "4c0bbee4-addc-4d73-81a0-b6caacae83c8" -version = "1.0.0" +version = "1.1.0" [[deps.ChunkCodecLibZstd]] deps = ["ChunkCodecCore", "Zstd_jll"] @@ -1446,9 +1414,9 @@ version = "1.0.0" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" +git-tree-sha1 = "970758a3d591a2a5c2a907c53f2e2f8c1b1d3537" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.8" +version = "0.7.9" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -1487,6 +1455,12 @@ git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" version = "1.1.0" +[[deps.CommonSolve]] +deps = ["PrecompileTools"] +git-tree-sha1 = "6c389fa857f6ca5a95474b52a52023fd77f24cb7" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.14" + [[deps.CommonSubexpressions]] deps = ["MacroTools"] git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" @@ -1494,25 +1468,45 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" [[deps.CommonWorldInvalidations]] -git-tree-sha1 = "f1697a56da59e8a2cefcbbfe71c13354a6f18c61" +deps = ["PrecompileTools"] +git-tree-sha1 = "7c4ea0adfb7238bf4678aa36325863fab6163f6f" uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" -version = "1.1.0" +version = "1.2.2" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.18.1" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.3.0+1" +version = "1.3.1+2" [[deps.CompositeTypes]] git-tree-sha1 = "bce26c3dab336582805503bed209faab1c279768" uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657" version = "0.1.4" +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" +git-tree-sha1 = "d5e5fa1f0d6ca517edbbcd734efa93c6639405b0" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.5.1" +version = "2.7.1" [[deps.ConstructionBase]] git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" @@ -1537,9 +1531,9 @@ version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "6fb53a69613a0b2b68a0d12671717d307ab8b24e" +git-tree-sha1 = "b0bc6d2cad1fed8b7fd59a1551a991cb3d2809e6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.5" +version = "0.19.6" [[deps.Dates]] deps = ["Printf"] @@ -1558,6 +1552,18 @@ git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" +[[deps.DeltaMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase"] +git-tree-sha1 = "eb4eafdd796377c6dfc1e842363291c5db8525c6" +uuid = "ea5de7a7-24c9-4a61-90ce-ef77c844b13f" +version = "1.0.0" + + [deps.DeltaMessagePassingRules.extensions] + DeltaMessagePassingRulesProjectionExt = "ExponentialFamilyProjection" + + [deps.DeltaMessagePassingRules.weakdeps] + ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + [[deps.Dictionaries]] deps = ["Indexing", "Random", "Serialization"] git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" @@ -1576,69 +1582,17 @@ git-tree-sha1 = "79a2aca180a85c690c58a020d47b426954b590f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.16.0" -[[deps.DifferentiationInterface]] -deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "2147a95a217cc8a78ec96ee03581adf129468e49" -uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.18" - - [deps.DifferentiationInterface.extensions] - DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" - DifferentiationInterfaceDiffractorExt = "Diffractor" - DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] - DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" - DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" - DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" - DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] - DifferentiationInterfaceGTPSAExt = "GTPSA" - DifferentiationInterfaceHyperHessiansExt = "HyperHessians" - DifferentiationInterfaceMooncakeExt = "Mooncake" - DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] - DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] - DifferentiationInterfaceSparseArraysExt = "SparseArrays" - DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" - DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" - DifferentiationInterfaceStaticArraysExt = "StaticArrays" - DifferentiationInterfaceSymbolicsExt = "Symbolics" - DifferentiationInterfaceTrackerExt = "Tracker" - DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] - - [deps.DifferentiationInterface.weakdeps] - Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" - Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" - FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" - HyperHessians = "06b494a0-c8e0-40cc-ad32-d99506a00a6c" - Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" - SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" -version = "1.11.0" +[[deps.DiscreteTransitionMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase"] +git-tree-sha1 = "1bf03a659aa103303f73a2ef40d74c206b02305a" +uuid = "039b7295-e235-4523-a933-c224bd9a7e58" +version = "1.0.0" [[deps.Distributions]] -deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "3c8a0a9a6d4a10bdfb6b751bd2b6051ed3e25fd4" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "Roots", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2ddbc341251ed713d39e503b504593a5d6789551" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.127" +version = "0.25.132" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -1657,36 +1611,27 @@ git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" -[[deps.DomainIntegrals]] -deps = ["CompositeTypes", "DomainSets", "FastGaussQuadrature", "FunctionMaps", "GaussQuadrature", "HCubature", "IntervalSets", "LinearAlgebra", "QuadGK", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "e90efe58cabfd58984ba5ba8edaf440251233384" -uuid = "cc6bae93-f070-4015-88fd-838f9505a86c" -version = "0.5.4" - [[deps.DomainSets]] deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "4599e0cd684f3ff6cbbab73c77553a3d01a8d74d" +git-tree-sha1 = "6ac879a64381881dc24f96a15e13e80204439906" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.18" +version = "0.8.3" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" DomainSetsRandomExt = "Random" + DomainSetsRecipesBaseExt = "RecipesBase" [deps.DomainSets.weakdeps] Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.7.0" -[[deps.EnumX]] -git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.7" - [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "8a4be429317c42cfae6a7fc03c31bad1970c310d" @@ -1695,9 +1640,9 @@ version = "0.0.20230411+1" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "d36f682e590a83d63d1c7dbd287573764682d12a" +git-tree-sha1 = "4e468f521e1f9f86891cb07186de5df90360a666" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.11" +version = "0.1.12" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1707,9 +1652,9 @@ version = "2.8.1+0" [[deps.ExponentialFamily]] deps = ["BayesBase", "BlockArrays", "Distributions", "DomainSets", "FastCholesky", "FillArrays", "ForwardDiff", "HCubature", "HypergeometricFunctions", "IntervalSets", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "PositiveFactorizations", "Random", "SparseArrays", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "a6b9907170f8e7958e01ff0d31b6838022f4db2f" +git-tree-sha1 = "22a03af5898b5f988efdd835f40af831164f7d4b" uuid = "62312e5e-252a-4322-ace9-a5f4bf9b357b" -version = "2.5.0" +version = "2.7.1" [[deps.FFMPEG]] deps = ["FFMPEG_jll"] @@ -1725,14 +1670,18 @@ version = "8.1.2+0" [[deps.FastCholesky]] deps = ["LinearAlgebra", "PositiveFactorizations"] -git-tree-sha1 = "1c0a81e006e40e9fcbd5f6f6cb42ac2700f86889" +git-tree-sha1 = "02f0dc1afe2c0bb73a0881727a4bf771a19ec190" uuid = "2d5283b6-8564-42b6-bb00-83ed8e915756" -version = "1.4.3" -weakdeps = ["StaticArraysCore"] +version = "1.5.0" [deps.FastCholesky.extensions] + ReactantExt = "Reactant" StaticArraysCoreExt = "StaticArraysCore" + [deps.FastCholesky.weakdeps] + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] git-tree-sha1 = "4916117dd032ec5959b7633aedbbac408ca5ddeb" @@ -1741,9 +1690,9 @@ version = "1.3.0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "8e9c059d6857607253e837730dbf780b6b151acd" +git-tree-sha1 = "6621fef488e496356c9c9625d0562c12a6070819" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.19.0" +version = "1.20.0" weakdeps = ["HTTP"] [deps.FileIO.extensions] @@ -1755,9 +1704,9 @@ version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "2f979084d1e13948a3352cf64a25df6bd3b4dca3" +git-tree-sha1 = "417289ac840d201005d9ed16789a46defccbe36d" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.16.0" +version = "1.18.1" weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [deps.FillArrays.extensions] @@ -1766,30 +1715,6 @@ weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] FillArraysStaticArraysExt = "StaticArrays" FillArraysStatisticsExt = "Statistics" -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "2e5742cda07276e1834281ada4cc71b6bfc87586" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.31.1" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" - FiniteDiffSparseArraysExt = "SparseArrays" - FiniteDiffStaticArraysExt = "StaticArrays" - - [deps.FiniteDiff.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - -[[deps.FixedArguments]] -deps = ["TupleTools"] -git-tree-sha1 = "befa1ad59c77643dec6fc20d71fd6f5c3afcdadd" -uuid = "4130a065-6d82-41fe-881e-7a5c65156f7d" -version = "0.1.1" - [[deps.FixedPointNumbers]] deps = ["Random", "Statistics"] git-tree-sha1 = "59af96b98217c6ef4ae0dfe065ac7c20831d1a84" @@ -1809,9 +1734,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "2c5d0b0e12088cde2cf84afb2784415b1ea3dfee" +git-tree-sha1 = "3b0f72e2ffef1a139ac450725c9ecd01c0a3c050" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.4.1" +version = "1.4.6" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -1835,10 +1760,11 @@ git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" version = "0.1.2" -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" -version = "1.11.0" +[[deps.GCVMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "StandardMessagePassingRules", "StatsFuns"] +git-tree-sha1 = "b9d896eff3b7dd887b119675f96d210abc31f2a9" +uuid = "2bb838d1-ae36-49a2-8c64-82a0acccfa93" +version = "1.0.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] @@ -1864,11 +1790,16 @@ git-tree-sha1 = "6fada551286ab6ea4ca1628cb2de9f166a2ec966" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" version = "0.73.26+0" -[[deps.GaussQuadrature]] -deps = ["SpecialFunctions"] -git-tree-sha1 = "eb6f1f48aa994f3018cbd029a17863c6535a266d" -uuid = "d54b0c1a-921d-58e0-8e36-89d8069c0969" -version = "0.5.8" +[[deps.Gamma]] +git-tree-sha1 = "86f86b6168a016ed88e4ae4e64577b98c3b59e8e" +uuid = "a0844989-3bd2-4988-8bea-c9407ab0941b" +version = "1.1.0" + +[[deps.GaussianCouplingMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesBase"] +git-tree-sha1 = "73948ad868fa022db11c678aaf1415ddb762f219" +uuid = "a57ce80c-d854-4eb3-973d-f0d0550df039" +version = "1.0.0" [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] @@ -1890,9 +1821,9 @@ version = "2.86.3+0" [[deps.GraphPPL]] deps = ["BitSetTuples", "DataStructures", "Dictionaries", "MacroTools", "MetaGraphsNext", "NamedTupleTools", "Static", "StaticArrays", "TupleTools", "Unrolled"] -git-tree-sha1 = "ea4b12cf4e8b76e4c075898724b37915808cace1" +git-tree-sha1 = "2d10297851848d1b6dc1dc335e549068e7890477" uuid = "b3f8163a-e979-4e85-b43e-1f63d8c8b42c" -version = "4.8.0" +version = "4.9.0" [deps.GraphPPL.extensions] GraphPPLDistributionsExt = "Distributions" @@ -1913,9 +1844,9 @@ version = "1.3.16+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "DataStructures", "Inflate", "LinearAlgebra", "Random", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "7eb45fe833a5b7c51cf6d89c5a841d5967e44be3" +git-tree-sha1 = "dbb2b976f605b220dfe139d6db9f3859680da09e" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.14.0" +version = "1.15.0" [deps.Graphs.extensions] GraphsSharedArraysExt = "SharedArrays" @@ -1953,10 +1884,10 @@ uuid = "076d061b-32b6-4027-95e0-9a2c6f6d7e74" version = "0.2.0" [[deps.HypergeometricFunctions]] -deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" +deps = ["Gamma", "LinearAlgebra"] +git-tree-sha1 = "31bb6c92405c084617facc1d7ed9eb6c402d061e" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.28" +version = "0.3.30" [[deps.Hyperscript]] deps = ["Test"] @@ -1997,26 +1928,42 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" version = "1.11.0" [[deps.IntervalSets]] -git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" +git-tree-sha1 = "0db6aea5b64caa1c47e9fdd27394f0296f05e8bf" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.14" -weakdeps = ["Random", "RecipesBase", "Statistics"] +version = "0.7.15" [deps.IntervalSets.extensions] + IntervalSetsMakieExt = "Makie" IntervalSetsRandomExt = "Random" IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" + [deps.IntervalSets.weakdeps] + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + +[[deps.InverseFunctions]] +git-tree-sha1 = "5cc6ad3e2bfc75a11eed92632ee341d37f4a4536" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.18" +weakdeps = ["Dates", "Test"] + + [deps.InverseFunctions.extensions] + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" + [[deps.IrrationalConstants]] -git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" +git-tree-sha1 = "d22e8bdb3f03c300a103ff23c0dd5a654c6701de" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.6" +version = "0.2.7" [[deps.JLD2]] -deps = ["ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] -git-tree-sha1 = "941f87a0ae1b14d1ac2fa57245425b23a9d7a516" +deps = ["ChunkCodecCore", "ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] +git-tree-sha1 = "9ce2e7c49ae4a7035b7d60db3a553b1f6c16875d" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.6.4" +version = "0.6.7" [deps.JLD2.extensions] UnPackExt = "UnPack" @@ -2038,9 +1985,9 @@ version = "1.8.0" [[deps.JSON]] deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] -git-tree-sha1 = "c89d196f5ffb64bfbf80985b699ea913b0d2c211" +git-tree-sha1 = "9939eb6f799a963b3392ac4a1d49d3fc0646eb80" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "1.6.1" +version = "1.11.0" [deps.JSON.extensions] JSONArrowExt = ["ArrowTypes"] @@ -2100,24 +2047,6 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "405e938379dbbdb24c0d93bd5b9600ecce03d11c" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.9.10" - - [deps.LazyArrays.extensions] - LazyArraysBandedMatricesExt = "BandedMatrices" - LazyArraysBlockArraysExt = "BlockArrays" - LazyArraysBlockBandedMatricesExt = "BlockBandedMatrices" - LazyArraysStaticArraysExt = "StaticArrays" - - [deps.LazyArrays.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" @@ -2183,12 +2112,6 @@ git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" version = "2.42.0+0" -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] -git-tree-sha1 = "cef1ba655e8c1f65af9d96c4fffe18bf1a3a3291" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.7.1" - [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" @@ -2258,6 +2181,18 @@ git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" version = "0.3.3" +[[deps.MessagePassingRulesApproximations]] +deps = ["Compat", "FastCholesky", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra"] +git-tree-sha1 = "0904181cd2a25ed85da53a3426af17f0fb7bb193" +uuid = "36043009-14b3-4068-9fb9-f1e492c92d7d" +version = "1.0.0" + +[[deps.MessagePassingRulesBase]] +deps = ["BayesBase", "Compat", "FastCholesky", "IrrationalConstants", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "386ffd59dc3b21d3d36542c41f7b0326c821813f" +uuid = "4a5b64c7-30c9-4471-82f2-bbe8464b157d" +version = "1.1.2" + [[deps.MetaGraphsNext]] deps = ["Graphs", "JLD2", "SimpleTraits"] git-tree-sha1 = "1983a06112db00c54e171f5cff8788c8efbdae85" @@ -2278,17 +2213,11 @@ version = "1.11.0" uuid = "14a3606d-f60d-562e-9121-12d972cd8159" version = "2025.11.4" -[[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "FiniteDiff", "LinearAlgebra"] -git-tree-sha1 = "b3f76b463c7998473062992b246045e6961a074e" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "8.0.0" - [[deps.NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "dbd2e8cd2c1c27f0b584f6661b4309609c5a685e" +git-tree-sha1 = "676c0f1c1c34224d6869675047a54b42fdc7b8c5" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.1.4" +version = "1.1.5" [[deps.NamedTupleTools]] git-tree-sha1 = "90914795fc59df44120fe3fff6742bb0d7adb1d0" @@ -2317,14 +2246,14 @@ version = "0.8.7+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "1d1aaa7d449b58415f97d2839c318b70ffb525a0" +git-tree-sha1 = "5caab1056e0734b87f62ae3a3b520d47d3e994e8" uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.6.1" +version = "1.7.0" [[deps.OpenSSL_jll]] deps = ["Artifacts", "Libdl"] uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.4+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -2332,18 +2261,6 @@ git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.6+0" -[[deps.Optim]] -deps = ["ADTypes", "EnumX", "FillArrays", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "PositiveFactorizations", "Printf", "SparseArrays", "Statistics"] -git-tree-sha1 = "6fe140aab6c042a73c9d5dc280b87b32eee44f9f" -uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "2.2.1" - - [deps.Optim.extensions] - OptimMOIExt = "MathOptInterface" - - [deps.Optim.weakdeps] - MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" - [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "e2bb57a313a74b8104064b7efd01406c0a50d2ff" @@ -2362,9 +2279,9 @@ version = "10.44.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a680e58292816791211582a4d8e44353835e991f" +git-tree-sha1 = "123266c25174ef6c8d4718920abc206452cf8de6" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.38" +version = "0.11.41" weakdeps = ["StatsBase"] [deps.PDMats.extensions] @@ -2377,10 +2294,10 @@ uuid = "36c8627f-9965-5494-a995-c6b170f724f3" version = "1.57.1+0" [[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "32a4e09c5f29402573d673901778a0e03b0807b9" +deps = ["Dates", "PrecompileTools"] +git-tree-sha1 = "663e8b48b789916221e0765393b289ca6c88f24e" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.6" +version = "3.0.0" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -2441,12 +2358,6 @@ git-tree-sha1 = "e189d0623e7ce9c37389bac17e80aac3b0302e75" uuid = "7f904dfe-b85e-4ff6-b463-dae2292396a8" version = "0.7.83" -[[deps.PolyaGammaHybridSamplers]] -deps = ["Distributions", "Random", "SpecialFunctions", "StatsFuns"] -git-tree-sha1 = "9f6139650ff57f9d8528cd809ebc604c7e9738b1" -uuid = "c636ee4f-4591-4d8c-9fae-2dea21daa433" -version = "1.2.6" - [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" @@ -2461,9 +2372,9 @@ version = "1.3.4" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "8b770b60760d4451834fe79dd483e318eee709c4" +git-tree-sha1 = "aef1987d90dcc2e2cbd919ad10b2d25bcce4f418" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.5.2" +version = "1.6.1" [[deps.Printf]] deps = ["Unicode"] @@ -2471,10 +2382,18 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" version = "1.11.0" [[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "fbb92c6c56b34e1a2c4c36058f68f332bec840e7" +deps = ["Printf"] +git-tree-sha1 = "ce5ba3edfdeba107a721748d53b5f5887f415853" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.11.0" +version = "1.13.0" + + [deps.ProgressMeter.extensions] + ProgressMeterDistributedExt = "Distributed" + ProgressMeterIJuliaExt = "IJulia" + + [deps.ProgressMeter.weakdeps] + Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" @@ -2534,18 +2453,16 @@ uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" version = "1.11.0" [[deps.ReactiveMP]] -deps = ["BayesBase", "DiffResults", "Distributions", "DomainIntegrals", "DomainSets", "ExponentialFamily", "FastCholesky", "FastGaussQuadrature", "FixedArguments", "ForwardDiff", "HCubature", "LazyArrays", "LinearAlgebra", "MacroTools", "MatrixCorrectionTools", "Optim", "PolyaGammaHybridSamplers", "PositiveFactorizations", "Random", "Rocket", "SpecialFunctions", "StatsBase", "StatsFuns", "TinyHugeNumbers", "Tullio", "TupleTools", "UUIDs"] -git-tree-sha1 = "e495df252e8564d65b215a2005684fe3a0deda93" +deps = ["BayesBase", "Compat", "Distributions", "LinearAlgebra", "MacroTools", "MessagePassingRulesBase", "Random", "Rocket", "TinyHugeNumbers", "TupleTools", "UUIDs"] +git-tree-sha1 = "944722ce6bfb8b1cdfb05a123afe9fe397fbd725" uuid = "a194aa59-28ba-4574-a09c-4a745416d6e3" -version = "6.3.0" +version = "7.0.0" [deps.ReactiveMP.extensions] - ReactiveMPOptimisersExt = "Optimisers" - ReactiveMPProjectionExt = "ExponentialFamilyProjection" + ReactiveMPReactantExt = "Reactant" [deps.ReactiveMP.weakdeps] - ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" - Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" [[deps.RecipesBase]] deps = ["PrecompileTools"] @@ -2584,15 +2501,15 @@ version = "0.9.0" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8" +git-tree-sha1 = "6d40b2fe70437b01397d2a4d5b020008da4e7019" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.5.1+0" +version = "0.5.2+0" [[deps.Rocket]] deps = ["DataStructures", "Sockets", "Unrolled"] -git-tree-sha1 = "12c8d9bb85176acf23057b679a894ea59eb922c8" +git-tree-sha1 = "ad8f448adaaedd25803f12bcff8d59a8a1dd8bbb" uuid = "df971d30-c9d6-4b37-b8ff-e965b2cb3a40" -version = "1.9.0" +version = "1.11.0" [deps.Rocket.extensions] RocketObservablesExt = "Observables" @@ -2600,20 +2517,46 @@ version = "1.9.0" [deps.Rocket.weakdeps] Observables = "510215fc-4207-5dde-b226-833fc4488ee2" +[[deps.Roots]] +deps = ["Accessors", "CommonSolve", "Printf"] +git-tree-sha1 = "e6ffa7bd4f8d0b8744d18f219304738d952f9a37" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "3.0.11" + + [deps.Roots.extensions] + RootsChainRulesCoreExt = "ChainRulesCore" + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + RootsUnitfulExt = "Unitful" + + [deps.Roots.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.RxInfer]] -deps = ["Base64", "BayesBase", "DataStructures", "Dates", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "Optim", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SparseArrays", "Static", "Statistics", "TupleTools", "UUIDs"] -git-tree-sha1 = "4098a13ad0db656071d6e71ff085cbec69300412" +deps = ["AutoregressiveMessagePassingRules", "Base64", "BayesBase", "DataStructures", "Dates", "DeltaMessagePassingRules", "DiscreteTransitionMessagePassingRules", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GCVMessagePassingRules", "GaussianCouplingMessagePassingRules", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "PrecompileTools", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SoftDotMessagePassingRules", "SparseArrays", "StandardMessagePassingRules", "Static", "Statistics", "TupleTools", "UUIDs"] +git-tree-sha1 = "cbb0595f742056ccab20beba5cf2a1253294c6dd" uuid = "86711068-29c9-4ff7-b620-ae75d7495b3d" -version = "5.5.0" +version = "6.1.0" [deps.RxInfer.extensions] + OptimExt = "Optim" PrettyTablesExt = "PrettyTables" ProjectionExt = "ExponentialFamilyProjection" + ReactantExt = "Reactant" TensorBoardLoggerExt = "TensorBoardLogger" [deps.RxInfer.weakdeps] ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.SHA]] @@ -2621,9 +2564,10 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLPublic]] -git-tree-sha1 = "912a1a941afb2a232183a485d86a437a25f88520" +deps = ["PrecompileTools"] +git-tree-sha1 = "74685afb51732a464fbce79a72708f7c4203ceb7" uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" -version = "1.2.0" +version = "1.3.0" [[deps.ScopedValues]] deps = ["HashArrayMappedTries", "Logging"] @@ -2641,12 +2585,6 @@ version = "1.3.0" uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" version = "1.11.0" -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "c5391c6ace3bc430ca630251d02ea9687169ca68" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.2" - [[deps.Showoff]] deps = ["Dates", "Grisu"] git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" @@ -2668,6 +2606,12 @@ version = "0.9.6" uuid = "6462fe0b-24de-5631-8697-dd941f90decc" version = "1.11.0" +[[deps.SoftDotMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "8ccebfa9b93d9908178cc0e97c4f4a480708740d" +uuid = "fdfab25d-afbd-4817-865a-cd280c067f5e" +version = "1.0.0" + [[deps.SortingAlgorithms]] deps = ["DataStructures"] git-tree-sha1 = "13cd91cc9be159e3f4d95b857fa2aa383b53772a" @@ -2681,9 +2625,9 @@ version = "1.12.0" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "6547cbdd8ce32efba0d21c5a40fa96d1a3548f9f" +git-tree-sha1 = "429071b23f4c9a13fb6582f807cc2ef454082408" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.8.0" +version = "2.9.0" [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" @@ -2697,17 +2641,23 @@ git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" +[[deps.StandardMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "LogExpFunctions", "MatrixCorrectionTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "SpecialFunctions", "StatsFuns"] +git-tree-sha1 = "ca7e44b8d9c49483dfab3fc5e91346d032cb7d45" +uuid = "d166223a-7879-43b1-add3-64af0a178e9e" +version = "1.0.0" + [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "cbc2fed5b692d12e199397471ba6c5988f69b629" +git-tree-sha1 = "474a5283ad435618090122872eea6a8165ea6bcf" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.4.1" +version = "1.4.6" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" +git-tree-sha1 = "8a8a52f887f38d44014e24ee46b8a7311c625f6d" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.18" +version = "1.9.24" [deps.StaticArrays.extensions] StaticArraysChainRulesCoreExt = "ChainRulesCore" @@ -2724,9 +2674,9 @@ version = "1.4.4" [[deps.Statistics]] deps = ["LinearAlgebra"] -git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" +git-tree-sha1 = "e2b53ce13a53367e96601081e33d34746b571bad" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.11.1" +version = "1.11.5" weakdeps = ["SparseArrays"] [deps.Statistics.extensions] @@ -2740,15 +2690,15 @@ version = "1.8.0" [[deps.StatsBase]] deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "e4d7a1a0edc20af42689ea6f4f3587a2175d50ee" +git-tree-sha1 = "adb9da019510162e67a4493fc235c23203d8b09e" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.12" +version = "0.34.13" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" +git-tree-sha1 = "0aa97471d55945556e8d2859568b8317cef98351" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.5.2" +version = "1.5.3" [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" @@ -2760,16 +2710,20 @@ version = "1.5.2" [[deps.StructUtils]] deps = ["Dates", "UUIDs"] -git-tree-sha1 = "82bee338d650aa515f31866c460cb7e3bcef90b8" +git-tree-sha1 = "ad435e30854ed0f50f4b7f67edd71664afecc5d8" uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" -version = "2.8.2" +version = "2.10.0" [deps.StructUtils.extensions] + StructUtilsDataFramesExt = ["DataFrames"] + StructUtilsLazilyInitializedFieldsExt = ["LazilyInitializedFields"] StructUtilsMeasurementsExt = ["Measurements"] StructUtilsStaticArraysCoreExt = ["StaticArraysCore"] StructUtilsTablesExt = ["Tables"] [deps.StructUtils.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazilyInitializedFields = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" @@ -2809,9 +2763,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" version = "1.11.0" [[deps.TinyHugeNumbers]] -git-tree-sha1 = "83c6abf376718345a85c071b249ef6692a8936d4" +git-tree-sha1 = "d5b24fd37550762d78280fb37c1800c3ea7e95cb" uuid = "783c9a47-75a3-44ac-a16b-f1ab7b3acf04" -version = "1.0.3" +version = "1.0.4" [[deps.TranscodingStreams]] git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" @@ -2823,33 +2777,16 @@ git-tree-sha1 = "311349fd1c93a31f783f977a71e8b062a57d4101" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.13" -[[deps.Tullio]] -deps = ["DiffRules", "LinearAlgebra", "Requires"] -git-tree-sha1 = "de0febfe1243e89f352abd4ca0e9de6c8e6190c5" -uuid = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc" -version = "0.3.9" - - [deps.Tullio.extensions] - TullioCUDAExt = "CUDA" - TullioChainRulesCoreExt = "ChainRulesCore" - TullioFillArraysExt = "FillArrays" - TullioTrackerExt = "Tracker" - - [deps.Tullio.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.TupleTools]] -git-tree-sha1 = "41e43b9dc950775eac654b9f845c839cd2f1821e" +git-tree-sha1 = "a1c7e924f746f0ebc792425e7d4d2ea5b4470697" uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" -version = "1.6.0" +version = "1.6.1" [[deps.URIs]] -git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" +deps = ["Serialization"] +git-tree-sha1 = "0392e5e3c5327b90a487b0ff3e818c4aecd3660b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.6.1" +version = "1.7.1" [[deps.UUIDs]] deps = ["Random", "SHA"] diff --git a/lectures/Intelligent Agents and Active Inference.jl b/lectures/Intelligent Agents and Active Inference.jl index 0dfd8240..4c00e095 100644 --- a/lectures/Intelligent Agents and Active Inference.jl +++ b/lectures/Intelligent Agents and Active Inference.jl @@ -2,9 +2,9 @@ # v1.0.3 #> [frontmatter] +#> image = "https://imgur.com/FlRMz2f.png" #> language = "en-US" #> description = "Introduction to Active Inference and application to the design of synthetic intelligent agents" -#> image = "https://imgur.com/FlRMz2f.png" #> #> [[frontmatter.author]] #> name = "BMLIP" @@ -653,55 +653,49 @@ RxInfer = "86711068-29c9-4ff7-b620-ae75d7495b3d" [compat] BmlipTeachingTools = "~1.4.1" -RxInfer = "~5.5.0" +RxInfer = "~6.1.0" """ # ╔═╡ 00000000-0000-0000-0000-000000000002 PLUTO_MANIFEST_TOML_CONTENTS = """ # This file is machine-generated - editing it directly is not advised -julia_version = "1.13.0" +julia_version = "1.12.7" manifest_format = "2.1" -project_hash = "0cc3b732cf0faa744007c541dcc521f80d7301ef" - -[[deps.ADTypes]] -git-tree-sha1 = "d9aaef7c63466eee4de23b4d9dad03629df54bea" -registries = "General" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.22.1" - - [deps.ADTypes.extensions] - ADTypesChainRulesCoreExt = "ChainRulesCore" - ADTypesConstructionBaseExt = "ConstructionBase" - ADTypesEnzymeCoreExt = "EnzymeCore" - - [deps.ADTypes.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" +project_hash = "ff75dd7c97d3140ff72508d3435ddb7f177b4620" [[deps.AbstractPlutoDingetjes]] git-tree-sha1 = "6c3913f4e9bdf6ba3c08041a446fb1332716cbc2" -registries = "General" uuid = "6e696c72-6542-2067-7265-42206c756150" version = "1.4.0" -[[deps.Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "daa72978cd7a624246e894a4f4f067706d4e17e2" -registries = "General" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.7.0" -weakdeps = ["SparseArrays", "StaticArrays"] - - [deps.Adapt.extensions] - AdaptSparseArraysExt = "SparseArrays" - AdaptStaticArraysExt = "StaticArrays" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "7063ad1083578215c7c4bf410368150abe8d5524" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.45" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.AliasTables]] deps = ["PtrArrays", "Random"] git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" -registries = "General" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" version = "1.1.3" @@ -712,53 +706,14 @@ version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" -registries = "General" uuid = "ec485272-7323-5ecc-a04f-4719b315124d" version = "0.4.0" -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "3d0cabd25fab32390e3bcb82cd67e700aebd9816" -registries = "General" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.25.0" - - [deps.ArrayInterface.extensions] - ArrayInterfaceAMDGPUExt = "AMDGPU" - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] - ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" - ArrayInterfaceChainRulesExt = "ChainRules" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceMetalExt = "Metal" - ArrayInterfaceReverseDiffExt = "ReverseDiff" - ArrayInterfaceSparseArraysExt = "SparseArrays" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - 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-registries = "General" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.5.1" +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" [[deps.ConstructionBase]] git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" -registries = "General" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" version = "1.6.0" weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] @@ -907,108 +867,61 @@ weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [[deps.DataAPI]] git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" -registries = "General" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "6fb53a69613a0b2b68a0d12671717d307ab8b24e" -registries = "General" 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"1.20.0" weakdeps = ["HTTP"] [deps.FileIO.extensions] @@ -1110,10 +1008,9 @@ version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "2f979084d1e13948a3352cf64a25df6bd3b4dca3" -registries = "General" +git-tree-sha1 = "417289ac840d201005d9ed16789a46defccbe36d" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.16.0" +version = "1.18.1" weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [deps.FillArrays.extensions] @@ -1122,51 +1019,22 @@ weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] FillArraysStaticArraysExt = "StaticArrays" FillArraysStatisticsExt = "Statistics" -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "2e5742cda07276e1834281ada4cc71b6bfc87586" -registries = "General" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.31.1" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = 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"DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "2c5d0b0e12088cde2cf84afb2784415b1ea3dfee" -registries = "General" +git-tree-sha1 = "3b0f72e2ffef1a139ac450725c9ecd01c0a3c050" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.4.1" +version = "1.4.6" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -1175,35 +1043,37 @@ weakdeps = ["StaticArrays"] [[deps.FunctionMaps]] deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" -registries = "General" uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" version = "0.1.2" -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" -version = "1.11.0" +[[deps.GCVMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "StandardMessagePassingRules", "StatsFuns"] +git-tree-sha1 = "b9d896eff3b7dd887b119675f96d210abc31f2a9" +uuid = "2bb838d1-ae36-49a2-8c64-82a0acccfa93" +version = "1.0.0" + +[[deps.Gamma]] +git-tree-sha1 = "86f86b6168a016ed88e4ae4e64577b98c3b59e8e" +uuid = "a0844989-3bd2-4988-8bea-c9407ab0941b" +version = "1.1.0" -[[deps.GaussQuadrature]] -deps = ["SpecialFunctions"] -git-tree-sha1 = "eb6f1f48aa994f3018cbd029a17863c6535a266d" -registries = "General" -uuid = "d54b0c1a-921d-58e0-8e36-89d8069c0969" -version = "0.5.8" +[[deps.GaussianCouplingMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesBase"] +git-tree-sha1 = "73948ad868fa022db11c678aaf1415ddb762f219" +uuid = "a57ce80c-d854-4eb3-973d-f0d0550df039" +version = "1.0.0" [[deps.Ghostscript_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Zlib_jll"] git-tree-sha1 = "38044a04637976140074d0b0621c1edf0eb531fd" -registries = "General" uuid = "61579ee1-b43e-5ca0-a5da-69d92c66a64b" version = "9.55.1+0" [[deps.GraphPPL]] deps = ["BitSetTuples", "DataStructures", "Dictionaries", "MacroTools", "MetaGraphsNext", "NamedTupleTools", "Static", "StaticArrays", "TupleTools", "Unrolled"] -git-tree-sha1 = "ea4b12cf4e8b76e4c075898724b37915808cace1" -registries = "General" +git-tree-sha1 = "2d10297851848d1b6dc1dc335e549068e7890477" uuid = "b3f8163a-e979-4e85-b43e-1f63d8c8b42c" -version = "4.8.0" +version = "4.9.0" [deps.GraphPPL.extensions] GraphPPLDistributionsExt = "Distributions" @@ -1218,10 +1088,9 @@ version = "4.8.0" [[deps.Graphs]] deps = ["ArnoldiMethod", "DataStructures", "Inflate", "LinearAlgebra", "Random", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "7eb45fe833a5b7c51cf6d89c5a841d5967e44be3" -registries = "General" +git-tree-sha1 = "dbb2b976f605b220dfe139d6db9f3859680da09e" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.14.0" +version = "1.15.0" [deps.Graphs.extensions] GraphsSharedArraysExt = "SharedArrays" @@ -1233,66 +1102,56 @@ version = "1.14.0" [[deps.HCubature]] deps = ["Combinatorics", "DataStructures", "LinearAlgebra", "QuadGK", "StaticArrays"] git-tree-sha1 = "8ee627fb73ecba0b5254158b04d4745611b404a1" -registries = "General" uuid = "19dc6840-f33b-545b-b366-655c7e3ffd49" version = "1.8.0" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "51059d23c8bb67911a2e6fd5130229113735fc7e" -registries = "General" +deps = ["Base64", "CodecZlib", "Dates", "EnumX", "Logging", "PrecompileTools", "Random", "Reseau", "SHA", "URIs", "UUIDs", "Zlib_jll"] +git-tree-sha1 = "33d8e43f09dce4d79b076f3022e96063db806df3" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.11.0" +version = "2.11.2" [[deps.HashArrayMappedTries]] git-tree-sha1 = "2eaa69a7cab70a52b9687c8bf950a5a93ec895ae" -registries = "General" uuid = 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[[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" -registries = "General" uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" version = "0.1.1" [[deps.Indexing]] git-tree-sha1 = "ce1566720fd6b19ff3411404d4b977acd4814f9f" -registries = "General" uuid = "313cdc1a-70c2-5d6a-ae34-0150d3930a38" version = "1.1.1" [[deps.Inflate]] git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" -registries = "General" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" version = "0.1.5" @@ -1302,33 +1161,42 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" version = "1.11.0" [[deps.IntervalSets]] -git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" -registries = "General" +git-tree-sha1 = "0db6aea5b64caa1c47e9fdd27394f0296f05e8bf" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.14" +version = "0.7.15" [deps.IntervalSets.extensions] + IntervalSetsMakieExt = "Makie" IntervalSetsRandomExt = "Random" IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [deps.IntervalSets.weakdeps] + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +[[deps.InverseFunctions]] +git-tree-sha1 = "5cc6ad3e2bfc75a11eed92632ee341d37f4a4536" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.18" +weakdeps = ["Dates", "Test"] + + [deps.InverseFunctions.extensions] + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" + [[deps.IrrationalConstants]] -git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" -registries = "General" +git-tree-sha1 = "d22e8bdb3f03c300a103ff23c0dd5a654c6701de" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.6" +version = "0.2.7" [[deps.JLD2]] -deps = ["ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] -git-tree-sha1 = "941f87a0ae1b14d1ac2fa57245425b23a9d7a516" -registries = "General" +deps = ["ChunkCodecCore", "ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] +git-tree-sha1 = "9ce2e7c49ae4a7035b7d60db3a553b1f6c16875d" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.6.4" +version = "0.6.7" [deps.JLD2.extensions] UnPackExt = "UnPack" @@ -1339,16 +1207,14 @@ version = "0.6.4" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] git-tree-sha1 = "7204148362dafe5fe6a273f855b8ccbe4df8173e" -registries = "General" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" version = "1.8.0" [[deps.JSON]] deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] -git-tree-sha1 = "c89d196f5ffb64bfbf80985b699ea913b0d2c211" -registries = "General" +git-tree-sha1 = "9939eb6f799a963b3392ac4a1d49d3fc0646eb80" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "1.6.1" +version = "1.11.0" [deps.JSON.extensions] JSONArrowExt = ["ArrowTypes"] @@ -1359,7 +1225,6 @@ version = "1.6.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" -registries = "General" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" version = "3.1.5+0" @@ -1370,14 +1235,12 @@ version = "1.12.0" [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" -registries = "General" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.4.0" [[deps.Latexify]] deps = ["Format", "Ghostscript_jll", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] git-tree-sha1 = "44f93c47f9cd6c7e431f2f2091fcba8f01cd7e8f" -registries = "General" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" version = "0.16.10" @@ -1393,34 +1256,15 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "405e938379dbbdb24c0d93bd5b9600ecce03d11c" -registries = "General" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.9.10" - - [deps.LazyArrays.extensions] - LazyArraysBandedMatricesExt = "BandedMatrices" - LazyArraysBlockArraysExt = "BlockArrays" - LazyArraysBlockBandedMatricesExt = "BlockBandedMatrices" - LazyArraysStaticArraysExt = "StaticArrays" - - [deps.LazyArrays.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "1.0.0" +version = "0.6.4" [[deps.LibCURL_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "LibSSH2_jll", "Libdl", "OpenSSL_jll", "Zlib_jll", "Zstd_jll", "nghttp2_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.18.0+1" +version = "8.15.0+0" [[deps.LibGit2]] deps = ["LibGit2_jll", "NetworkOptions", "Printf", "SHA"] @@ -1428,35 +1272,27 @@ uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" version = "1.11.0" [[deps.LibGit2_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "LibSSH2_jll", "Libdl", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.9.1+0" +version = "1.9.0+0" [[deps.LibSSH2_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl", "OpenSSL_jll", "Zlib_jll"] +deps = ["Artifacts", "Libdl", "OpenSSL_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.11.103+0" +version = "1.11.3+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" version = "1.11.0" -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] -git-tree-sha1 = "cef1ba655e8c1f65af9d96c4fffe18bf1a3a3291" -registries = "General" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.7.1" - [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -version = "1.13.0" +version = "1.12.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] git-tree-sha1 = "13ca9e2586b89836fd20cccf56e57e2b9ae7f38f" -registries = "General" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" version = "0.3.29" @@ -1474,22 +1310,13 @@ version = "0.3.29" uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" version = "1.11.0" -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "f00544d95982ea270145636c181ceda21c4e2575" -registries = "General" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.2.0" - [[deps.MIMEs]] git-tree-sha1 = "c64d943587f7187e751162b3b84445bbbd79f691" -registries = "General" uuid = "6c6e2e6c-3030-632d-7369-2d6c69616d65" version = "1.1.0" [[deps.MacroTools]] git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" -registries = "General" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.16" @@ -1501,35 +1328,30 @@ version = "1.11.0" [[deps.MatrixCorrectionTools]] deps = ["LinearAlgebra"] git-tree-sha1 = "73f93b21eae5714c282396bfae9d9f13d6ad04b6" -registries = "General" uuid = "41f81499-25de-46de-b591-c3cfc21e9eaf" version = "1.2.0" -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] -git-tree-sha1 = "8785729fa736197687541f7053f6d8ab7fc44f92" -registries = "General" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.10" +[[deps.MessagePassingRulesApproximations]] +deps = ["Compat", "FastCholesky", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra"] +git-tree-sha1 = "0904181cd2a25ed85da53a3426af17f0fb7bb193" +uuid = "36043009-14b3-4068-9fb9-f1e492c92d7d" +version = "1.0.0" -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "ff69a2b1330bcb730b9ac1ab7dd680176f5896b8" -registries = "General" -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.1010+0" +[[deps.MessagePassingRulesBase]] +deps = ["BayesBase", "Compat", "FastCholesky", "IrrationalConstants", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "386ffd59dc3b21d3d36542c41f7b0326c821813f" +uuid = "4a5b64c7-30c9-4471-82f2-bbe8464b157d" +version = "1.1.2" [[deps.MetaGraphsNext]] deps = ["Graphs", "JLD2", "SimpleTraits"] git-tree-sha1 = "1983a06112db00c54e171f5cff8788c8efbdae85" -registries = "General" uuid = "fa8bd995-216d-47f1-8a91-f3b68fbeb377" version = "0.7.5" [[deps.Missings]] deps = ["DataAPI"] git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" -registries = "General" uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" version = "1.2.0" @@ -1539,25 +1361,16 @@ version = "1.11.0" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2026.8.13" - -[[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "FiniteDiff", "LinearAlgebra"] -git-tree-sha1 = "b3f76b463c7998473062992b246045e6961a074e" -registries = "General" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "8.0.0" +version = "2025.11.4" [[deps.NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "dbd2e8cd2c1c27f0b584f6661b4309609c5a685e" -registries = "General" +git-tree-sha1 = "676c0f1c1c34224d6869675047a54b42fdc7b8c5" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.1.4" +version = "1.1.5" [[deps.NamedTupleTools]] git-tree-sha1 = "90914795fc59df44120fe3fff6742bb0d7adb1d0" -registries = "General" uuid = "d9ec5142-1e00-5aa0-9d6a-321866360f50" version = "0.14.3" @@ -1568,20 +1381,13 @@ version = "1.3.0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.30+0" +version = "0.3.29+0" [[deps.OpenLibm_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" version = "0.8.7+0" -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "1d1aaa7d449b58415f97d2839c318b70ffb525a0" -registries = "General" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.6.1" - [[deps.OpenSSL_jll]] deps = ["Artifacts", "Libdl"] uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" @@ -1590,56 +1396,34 @@ version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335" -registries = "General" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.6+0" -[[deps.Optim]] -deps = ["ADTypes", "EnumX", "FillArrays", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "PositiveFactorizations", "Printf", "SparseArrays", "Statistics"] -git-tree-sha1 = "6fe140aab6c042a73c9d5dc280b87b32eee44f9f" -registries = "General" -uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "2.2.1" - - [deps.Optim.extensions] - OptimMOIExt = "MathOptInterface" - - [deps.Optim.weakdeps] - MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" - [[deps.OrderedCollections]] git-tree-sha1 = "94ba93778373a53bfd5a0caaf7d809c445292ff4" -registries = "General" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.2" -[[deps.PCRE2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.46.0+0" - [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a680e58292816791211582a4d8e44353835e991f" -registries = "General" +git-tree-sha1 = "123266c25174ef6c8d4718920abc206452cf8de6" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.38" +version = "0.11.41" weakdeps = ["StatsBase"] [deps.PDMats.extensions] StatsBaseExt = "StatsBase" [[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "32a4e09c5f29402573d673901778a0e03b0807b9" -registries = "General" +deps = ["Dates", "PrecompileTools"] +git-tree-sha1 = "663e8b48b789916221e0765393b289ca6c88f24e" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.6" +version = "3.0.0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "Zstd_jll", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.13.0" +version = "1.12.1" [deps.Pkg.extensions] REPLExt = "REPL" @@ -1650,44 +1434,32 @@ version = "1.13.0" [[deps.PlutoTeachingTools]] deps = ["Downloads", "HypertextLiteral", "Latexify", "Markdown", "PlutoUI"] git-tree-sha1 = "90b41ced6bacd8c01bd05da8aed35c5458891749" -registries = "General" uuid = "661c6b06-c737-4d37-b85c-46df65de6f69" version = "0.4.7" [[deps.PlutoUI]] deps = ["AbstractPlutoDingetjes", "Base64", "ColorTypes", "Dates", "Downloads", "FixedPointNumbers", "Hyperscript", "HypertextLiteral", "IOCapture", "InteractiveUtils", "Logging", "MIMEs", "Markdown", "Random", "Reexport", "URIs", "UUIDs"] git-tree-sha1 = "e189d0623e7ce9c37389bac17e80aac3b0302e75" -registries = "General" uuid = "7f904dfe-b85e-4ff6-b463-dae2292396a8" version = "0.7.83" -[[deps.PolyaGammaHybridSamplers]] -deps = ["Distributions", "Random", "SpecialFunctions", "StatsFuns"] -git-tree-sha1 = "9f6139650ff57f9d8528cd809ebc604c7e9738b1" -registries = "General" -uuid = "c636ee4f-4591-4d8c-9fae-2dea21daa433" -version = "1.2.6" - [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" -registries = "General" uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" version = "0.2.4" [[deps.PrecompileTools]] deps = ["Preferences"] git-tree-sha1 = "edbeefc7a4889f528644251bdb5fc9ab5348bc2c" -registries = "General" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" version = "1.3.4" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "8b770b60760d4451834fe79dd483e318eee709c4" -registries = "General" +git-tree-sha1 = "aef1987d90dcc2e2cbd919ad10b2d25bcce4f418" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.5.2" +version = "1.6.1" [[deps.Printf]] deps = ["Unicode"] @@ -1695,22 +1467,27 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" version = "1.11.0" [[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "fbb92c6c56b34e1a2c4c36058f68f332bec840e7" -registries = "General" +deps = ["Printf"] +git-tree-sha1 = "ce5ba3edfdeba107a721748d53b5f5887f415853" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.11.0" +version = "1.13.0" + + [deps.ProgressMeter.extensions] + ProgressMeterDistributedExt = "Distributed" + ProgressMeterIJuliaExt = "IJulia" + + [deps.ProgressMeter.weakdeps] + Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" -registries = "General" uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" version = "1.4.0" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" -registries = "General" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" version = "2.11.3" @@ -1726,53 +1503,51 @@ uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" version = "1.11.0" [[deps.ReactiveMP]] -deps = ["BayesBase", "DiffResults", "Distributions", "DomainIntegrals", "DomainSets", "ExponentialFamily", "FastCholesky", "FastGaussQuadrature", "FixedArguments", "ForwardDiff", "HCubature", "LazyArrays", "LinearAlgebra", "MacroTools", "MatrixCorrectionTools", "Optim", "PolyaGammaHybridSamplers", "PositiveFactorizations", "Random", "Rocket", "SpecialFunctions", "StatsBase", "StatsFuns", "TinyHugeNumbers", "Tullio", "TupleTools", "UUIDs"] -git-tree-sha1 = "e495df252e8564d65b215a2005684fe3a0deda93" -registries = "General" +deps = ["BayesBase", "Compat", "Distributions", "LinearAlgebra", "MacroTools", "MessagePassingRulesBase", "Random", "Rocket", "TinyHugeNumbers", "TupleTools", "UUIDs"] +git-tree-sha1 = "944722ce6bfb8b1cdfb05a123afe9fe397fbd725" uuid = "a194aa59-28ba-4574-a09c-4a745416d6e3" -version = "6.3.0" +version = "7.0.0" [deps.ReactiveMP.extensions] - ReactiveMPOptimisersExt = "Optimisers" - ReactiveMPProjectionExt = "ExponentialFamilyProjection" + ReactiveMPReactantExt = "Reactant" [deps.ReactiveMP.weakdeps] - ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" - Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" -registries = "General" uuid = "189a3867-3050-52da-a836-e630ba90ab69" version = "1.2.2" [[deps.Requires]] deps = ["UUIDs"] git-tree-sha1 = "62389eeff14780bfe55195b7204c0d8738436d64" -registries = "General" uuid = "ae029012-a4dd-5104-9daa-d747884805df" version = "1.3.1" +[[deps.Reseau]] +deps = ["NetworkOptions", "OpenSSL_jll", "PrecompileTools", "Random", "SHA"] +git-tree-sha1 = "c1332beecf9cf267e99b83ab878a3460f047964f" +uuid = "802f3686-a58f-41ce-bb0c-3c43c75bba36" +version = "1.6.1" + [[deps.Rmath]] deps = ["Random", "Rmath_jll"] git-tree-sha1 = "5b3d50eb374cea306873b371d3f8d3915a018f0b" -registries = "General" uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" version = "0.9.0" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8" -registries = "General" +git-tree-sha1 = "6d40b2fe70437b01397d2a4d5b020008da4e7019" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.5.1+0" +version = "0.5.2+0" [[deps.Rocket]] deps = ["DataStructures", "Sockets", "Unrolled"] -git-tree-sha1 = "12c8d9bb85176acf23057b679a894ea59eb922c8" -registries = "General" +git-tree-sha1 = "ad8f448adaaedd25803f12bcff8d59a8a1dd8bbb" uuid = "df971d30-c9d6-4b37-b8ff-e965b2cb3a40" -version = "1.9.0" +version = "1.11.0" [deps.Rocket.extensions] RocketObservablesExt = "Observables" @@ -1780,37 +1555,61 @@ version = "1.9.0" [deps.Rocket.weakdeps] Observables = "510215fc-4207-5dde-b226-833fc4488ee2" +[[deps.Roots]] +deps = ["Accessors", "CommonSolve", "Printf"] +git-tree-sha1 = "e6ffa7bd4f8d0b8744d18f219304738d952f9a37" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "3.0.11" + + [deps.Roots.extensions] + RootsChainRulesCoreExt = "ChainRulesCore" + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + RootsUnitfulExt = "Unitful" + + [deps.Roots.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.RxInfer]] -deps = ["Base64", "BayesBase", "DataStructures", "Dates", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "Optim", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SparseArrays", "Static", "Statistics", "TupleTools", "UUIDs"] -git-tree-sha1 = "4098a13ad0db656071d6e71ff085cbec69300412" -registries = "General" +deps = ["AutoregressiveMessagePassingRules", "Base64", "BayesBase", "DataStructures", "Dates", "DeltaMessagePassingRules", "DiscreteTransitionMessagePassingRules", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GCVMessagePassingRules", "GaussianCouplingMessagePassingRules", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "PrecompileTools", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SoftDotMessagePassingRules", "SparseArrays", "StandardMessagePassingRules", "Static", "Statistics", "TupleTools", "UUIDs"] +git-tree-sha1 = "cbb0595f742056ccab20beba5cf2a1253294c6dd" uuid = "86711068-29c9-4ff7-b620-ae75d7495b3d" -version = "5.5.0" +version = "6.1.0" [deps.RxInfer.extensions] + OptimExt = "Optim" PrettyTablesExt = "PrettyTables" ProjectionExt = "ExponentialFamilyProjection" + ReactantExt = "Reactant" TensorBoardLoggerExt = "TensorBoardLogger" [deps.RxInfer.weakdeps] ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "1.0.0" +version = "0.7.0" [[deps.SciMLPublic]] -git-tree-sha1 = "912a1a941afb2a232183a485d86a437a25f88520" -registries = "General" +deps = ["PrecompileTools"] +git-tree-sha1 = "74685afb51732a464fbce79a72708f7c4203ceb7" uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" -version = "1.2.0" +version = "1.3.0" [[deps.ScopedValues]] deps = ["HashArrayMappedTries", "Logging"] git-tree-sha1 = "67a144433c4ce877ee6d1ada69a124d6b1ecf7be" -registries = "General" uuid = "7e506255-f358-4e82-b7e4-beb19740aa63" version = "1.6.2" @@ -1818,23 +1617,9 @@ version = "1.6.2" uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" version = "1.11.0" -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "c5391c6ace3bc430ca630251d02ea9687169ca68" -registries = "General" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.2" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "f305871d2f381d21527c770d4788c06c097c9bc1" -registries = "General" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.2.0" - [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] git-tree-sha1 = "7ddb0b49c109481b046972c0e4ab02b2127d6a75" -registries = "General" uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" version = "0.9.6" @@ -1842,24 +1627,28 @@ version = "0.9.6" uuid = "6462fe0b-24de-5631-8697-dd941f90decc" version = "1.11.0" +[[deps.SoftDotMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "8ccebfa9b93d9908178cc0e97c4f4a480708740d" +uuid = "fdfab25d-afbd-4817-865a-cd280c067f5e" +version = "1.0.0" + [[deps.SortingAlgorithms]] deps = ["DataStructures"] git-tree-sha1 = "13cd91cc9be159e3f4d95b857fa2aa383b53772a" -registries = "General" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" version = "1.2.3" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.13.0" +version = "1.12.0" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "6547cbdd8ce32efba0d21c5a40fa96d1a3548f9f" -registries = "General" +git-tree-sha1 = "429071b23f4c9a13fb6582f807cc2ef454082408" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.8.0" +version = "2.9.0" [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" @@ -1867,19 +1656,23 @@ version = "2.8.0" [deps.SpecialFunctions.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +[[deps.StandardMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "LogExpFunctions", "MatrixCorrectionTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "SpecialFunctions", "StatsFuns"] +git-tree-sha1 = "ca7e44b8d9c49483dfab3fc5e91346d032cb7d45" +uuid = "d166223a-7879-43b1-add3-64af0a178e9e" +version = "1.0.0" + [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "cbc2fed5b692d12e199397471ba6c5988f69b629" -registries = "General" +git-tree-sha1 = "474a5283ad435618090122872eea6a8165ea6bcf" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.4.1" +version = "1.4.6" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" -registries = "General" +git-tree-sha1 = "8a8a52f887f38d44014e24ee46b8a7311c625f6d" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.18" +version = "1.9.24" [deps.StaticArrays.extensions] StaticArraysChainRulesCoreExt = "ChainRulesCore" @@ -1891,16 +1684,14 @@ version = "1.9.18" [[deps.StaticArraysCore]] git-tree-sha1 = "6ab403037779dae8c514bad259f32a447262455a" -registries = "General" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] deps = ["LinearAlgebra"] -git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" -registries = "General" +git-tree-sha1 = "e2b53ce13a53367e96601081e33d34746b571bad" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.11.1" +version = "1.11.5" weakdeps = ["SparseArrays"] [deps.Statistics.extensions] @@ -1909,23 +1700,20 @@ weakdeps = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] git-tree-sha1 = "178ed29fd5b2a2cfc3bd31c13375ae925623ff36" -registries = "General" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" version = "1.8.0" [[deps.StatsBase]] deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "e4d7a1a0edc20af42689ea6f4f3587a2175d50ee" -registries = "General" +git-tree-sha1 = "adb9da019510162e67a4493fc235c23203d8b09e" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.12" +version = "0.34.13" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" -registries = "General" +git-tree-sha1 = "0aa97471d55945556e8d2859568b8317cef98351" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.5.2" +version = "1.5.3" [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" @@ -1937,17 +1725,20 @@ version = "1.5.2" [[deps.StructUtils]] deps = ["Dates", "UUIDs"] -git-tree-sha1 = "82bee338d650aa515f31866c460cb7e3bcef90b8" -registries = "General" +git-tree-sha1 = "ad435e30854ed0f50f4b7f67edd71664afecc5d8" uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" -version = "2.8.2" +version = "2.10.0" [deps.StructUtils.extensions] + StructUtilsDataFramesExt = ["DataFrames"] + StructUtilsLazilyInitializedFieldsExt = ["LazilyInitializedFields"] StructUtilsMeasurementsExt = ["Measurements"] StructUtilsStaticArraysCoreExt = ["StaticArraysCore"] StructUtilsTablesExt = ["Tables"] [deps.StructUtils.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazilyInitializedFields = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" @@ -1961,9 +1752,9 @@ deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.10.1+0" +version = "7.8.3+2" [[deps.TOML]] deps = ["Dates"] @@ -1981,53 +1772,30 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" version = "1.11.0" [[deps.TinyHugeNumbers]] -git-tree-sha1 = "83c6abf376718345a85c071b249ef6692a8936d4" -registries = "General" +git-tree-sha1 = "d5b24fd37550762d78280fb37c1800c3ea7e95cb" uuid = "783c9a47-75a3-44ac-a16b-f1ab7b3acf04" -version = "1.0.3" +version = "1.0.4" [[deps.TranscodingStreams]] git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" -registries = "General" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" version = "0.11.3" [[deps.Tricks]] git-tree-sha1 = "311349fd1c93a31f783f977a71e8b062a57d4101" -registries = "General" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.13" -[[deps.Tullio]] -deps = ["DiffRules", "LinearAlgebra", "Requires"] -git-tree-sha1 = "de0febfe1243e89f352abd4ca0e9de6c8e6190c5" -registries = "General" -uuid = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc" -version = "0.3.9" - - [deps.Tullio.extensions] - TullioCUDAExt = "CUDA" - TullioChainRulesCoreExt = "ChainRulesCore" - TullioFillArraysExt = "FillArrays" - TullioTrackerExt = "Tracker" - - [deps.Tullio.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.TupleTools]] -git-tree-sha1 = "41e43b9dc950775eac654b9f845c839cd2f1821e" -registries = "General" +git-tree-sha1 = "a1c7e924f746f0ebc792425e7d4d2ea5b4470697" uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" -version = "1.6.0" +version = "1.6.1" [[deps.URIs]] -git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" -registries = "General" +deps = ["Serialization"] +git-tree-sha1 = "0392e5e3c5327b90a487b0ff3e818c4aecd3660b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.6.1" +version = "1.7.1" [[deps.UUIDs]] deps = ["Random", "SHA"] @@ -2041,7 +1809,6 @@ version = "1.11.0" [[deps.Unrolled]] deps = ["MacroTools"] git-tree-sha1 = "6cc9d682755680e0f0be87c56392b7651efc2c7b" -registries = "General" uuid = "9602ed7d-8fef-5bc8-8597-8f21381861e8" version = "0.1.5" @@ -2051,7 +1818,8 @@ uuid = "83775a58-1f1d-513f-b197-d71354ab007a" version = "1.3.1+2" [[deps.Zstd_jll]] -deps = ["CompilerSupportLibraries_jll", "Libdl"] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.7+1" @@ -2061,14 +1829,14 @@ uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" version = "5.15.0+0" [[deps.nghttp2_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.67.1+0" +version = "1.64.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.8.2+0" +version = "17.7.0+0" [registries.General] url = "https://github.com/JuliaRegistries/General.git" diff --git a/minis/RxInfer tips and tricks.jl b/minis/RxInfer tips and tricks.jl index 6a8deb8b..01332649 100644 --- a/minis/RxInfer tips and tricks.jl +++ b/minis/RxInfer tips and tricks.jl @@ -1,5 +1,5 @@ ### A Pluto.jl notebook ### -# v0.20.28 +# v1.0.3 using Markdown using InteractiveUtils @@ -177,49 +177,47 @@ RxInfer = "86711068-29c9-4ff7-b620-ae75d7495b3d" [compat] BmlipTeachingTools = "~1.4.1" -Distributions = "~0.25.127" +Distributions = "~0.25.132" Plots = "~1.41.6" -RxInfer = "~5.5.0" +RxInfer = "~6.1.0" """ # ╔═╡ 00000000-0000-0000-0000-000000000002 PLUTO_MANIFEST_TOML_CONTENTS = """ # This file is machine-generated - editing it directly is not advised -julia_version = "1.12.6" +julia_version = "1.12.7" manifest_format = "2.0" -project_hash = "c0f90d1b97e559b4e4be1d46cd8d41253751dab1" - -[[deps.ADTypes]] -git-tree-sha1 = "d9aaef7c63466eee4de23b4d9dad03629df54bea" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.22.1" - - [deps.ADTypes.extensions] - ADTypesChainRulesCoreExt = "ChainRulesCore" - ADTypesConstructionBaseExt = "ConstructionBase" - ADTypesEnzymeCoreExt = "EnzymeCore" - - [deps.ADTypes.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" +project_hash = "239dd73619a0eab9f284b71aa8084786c98f0651" [[deps.AbstractPlutoDingetjes]] git-tree-sha1 = "6c3913f4e9bdf6ba3c08041a446fb1332716cbc2" uuid = "6e696c72-6542-2067-7265-42206c756150" version = "1.4.0" -[[deps.Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "daa72978cd7a624246e894a4f4f067706d4e17e2" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.7.0" -weakdeps = ["SparseArrays", "StaticArrays"] +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "7063ad1083578215c7c4bf410368150abe8d5524" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.45" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" - [deps.Adapt.extensions] - AdaptSparseArraysExt = "SparseArrays" - AdaptStaticArraysExt = "StaticArrays" + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.AliasTables]] deps = ["PtrArrays", "Random"] @@ -237,47 +235,11 @@ git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" uuid = "ec485272-7323-5ecc-a04f-4719b315124d" version = "0.4.0" -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "3d0cabd25fab32390e3bcb82cd67e700aebd9816" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.25.0" - - [deps.ArrayInterface.extensions] - ArrayInterfaceAMDGPUExt = "AMDGPU" - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] - ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" - ArrayInterfaceChainRulesExt = "ChainRules" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceMetalExt = "Metal" - ArrayInterfaceReverseDiffExt = "ReverseDiff" - ArrayInterfaceSparseArraysExt = "SparseArrays" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" - ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "e0b47732a192dd59b9d079a06d04235e2f833963" +git-tree-sha1 = "b4a2d2dfcaedf8f0cb93a970c4ccba6f632f14cc" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.12.2" +version = "1.15.1" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -287,15 +249,21 @@ weakdeps = ["SparseArrays"] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" version = "1.11.0" +[[deps.AutoregressiveMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "4c9f3f4edd4580e385535bce39a6a39f8f1a6aa9" +uuid = "bbb8872a-15f9-43f6-924d-37f12d04ed53" +version = "1.0.0" + [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" version = "1.11.0" [[deps.BayesBase]] deps = ["Distributions", "DomainSets", "LinearAlgebra", "Random", "SpecialFunctions", "StaticArrays", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "e644fb61dcc7b0df1be931230d2b9bc3a96d912f" +git-tree-sha1 = "cadec5ad37b53e1198f36524b30297fc0df98aae" uuid = "b4ee3484-f114-42fe-b91c-797d54a0c67e" -version = "1.5.9" +version = "1.5.12" weakdeps = ["FastCholesky"] [deps.BayesBase.extensions] @@ -314,9 +282,9 @@ version = "1.1.5" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "0f606a9894e2bcda541ceb82a91a13c5d450ed97" +git-tree-sha1 = "876d4c4b941cc8b079da79c88d9c2dee52b9dd13" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "1.9.3" +version = "1.10.3" [deps.BlockArrays.extensions] BlockArraysAdaptExt = "Adapt" @@ -345,15 +313,15 @@ uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.18.7+0" [[deps.ChunkCodecCore]] -git-tree-sha1 = "1a3ad7e16a321667698a19e77362b35a1e94c544" +git-tree-sha1 = "3496e2b359c27793d12bec54ec94be7983a6ceb2" uuid = "0b6fb165-00bc-4d37-ab8b-79f91016dbe1" -version = "1.0.1" +version = "1.0.2" [[deps.ChunkCodecLibZlib]] deps = ["ChunkCodecCore", "Zlib_jll"] -git-tree-sha1 = "cee8104904c53d39eb94fd06cbe60cb5acde7177" +git-tree-sha1 = "d4101e848e8d3f585d61d244c2fe0c80a70e6b3b" uuid = "4c0bbee4-addc-4d73-81a0-b6caacae83c8" -version = "1.0.0" +version = "1.1.0" [[deps.ChunkCodecLibZstd]] deps = ["ChunkCodecCore", "Zstd_jll"] @@ -363,9 +331,9 @@ version = "1.0.0" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" +git-tree-sha1 = "970758a3d591a2a5c2a907c53f2e2f8c1b1d3537" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.8" +version = "0.7.9" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -404,6 +372,12 @@ git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" version = "1.1.0" +[[deps.CommonSolve]] +deps = ["PrecompileTools"] +git-tree-sha1 = "6c389fa857f6ca5a95474b52a52023fd77f24cb7" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.14" + [[deps.CommonSubexpressions]] deps = ["MacroTools"] git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" @@ -411,25 +385,45 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" [[deps.CommonWorldInvalidations]] -git-tree-sha1 = "f1697a56da59e8a2cefcbbfe71c13354a6f18c61" +deps = ["PrecompileTools"] +git-tree-sha1 = "7c4ea0adfb7238bf4678aa36325863fab6163f6f" uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" -version = "1.1.0" +version = "1.2.2" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.18.1" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.3.0+1" +version = "1.3.1+2" [[deps.CompositeTypes]] git-tree-sha1 = "bce26c3dab336582805503bed209faab1c279768" uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657" version = "0.1.4" +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" +git-tree-sha1 = "d5e5fa1f0d6ca517edbbcd734efa93c6639405b0" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.5.1" +version = "2.7.1" [[deps.ConstructionBase]] git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" @@ -454,9 +448,9 @@ version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "6fb53a69613a0b2b68a0d12671717d307ab8b24e" +git-tree-sha1 = "b0bc6d2cad1fed8b7fd59a1551a991cb3d2809e6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.5" +version = "0.19.6" [[deps.Dates]] deps = ["Printf"] @@ -475,6 +469,18 @@ git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" +[[deps.DeltaMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase"] +git-tree-sha1 = "eb4eafdd796377c6dfc1e842363291c5db8525c6" +uuid = "ea5de7a7-24c9-4a61-90ce-ef77c844b13f" +version = "1.0.0" + + [deps.DeltaMessagePassingRules.extensions] + DeltaMessagePassingRulesProjectionExt = "ExponentialFamilyProjection" + + [deps.DeltaMessagePassingRules.weakdeps] + ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + [[deps.Dictionaries]] deps = ["Indexing", "Random", "Serialization"] git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" @@ -493,69 +499,17 @@ git-tree-sha1 = "79a2aca180a85c690c58a020d47b426954b590f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.16.0" -[[deps.DifferentiationInterface]] -deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "2147a95a217cc8a78ec96ee03581adf129468e49" -uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.18" - - [deps.DifferentiationInterface.extensions] - DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" - DifferentiationInterfaceDiffractorExt = "Diffractor" - DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] - DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" - DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" - DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" - DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] - DifferentiationInterfaceGTPSAExt = "GTPSA" - DifferentiationInterfaceHyperHessiansExt = "HyperHessians" - DifferentiationInterfaceMooncakeExt = "Mooncake" - DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] - DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] - DifferentiationInterfaceSparseArraysExt = "SparseArrays" - DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" - DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" - DifferentiationInterfaceStaticArraysExt = "StaticArrays" - DifferentiationInterfaceSymbolicsExt = "Symbolics" - DifferentiationInterfaceTrackerExt = "Tracker" - DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] - - [deps.DifferentiationInterface.weakdeps] - Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" - Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" - FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" - HyperHessians = "06b494a0-c8e0-40cc-ad32-d99506a00a6c" - Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" - SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" -version = "1.11.0" +[[deps.DiscreteTransitionMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase"] +git-tree-sha1 = "1bf03a659aa103303f73a2ef40d74c206b02305a" +uuid = "039b7295-e235-4523-a933-c224bd9a7e58" +version = "1.0.0" [[deps.Distributions]] -deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "3c8a0a9a6d4a10bdfb6b751bd2b6051ed3e25fd4" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "Roots", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2ddbc341251ed713d39e503b504593a5d6789551" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.127" +version = "0.25.132" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -574,36 +528,27 @@ git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" -[[deps.DomainIntegrals]] -deps = ["CompositeTypes", "DomainSets", "FastGaussQuadrature", "FunctionMaps", "GaussQuadrature", "HCubature", "IntervalSets", "LinearAlgebra", "QuadGK", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "e90efe58cabfd58984ba5ba8edaf440251233384" -uuid = "cc6bae93-f070-4015-88fd-838f9505a86c" -version = "0.5.4" - [[deps.DomainSets]] deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "4599e0cd684f3ff6cbbab73c77553a3d01a8d74d" +git-tree-sha1 = "6ac879a64381881dc24f96a15e13e80204439906" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.18" +version = "0.8.3" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" DomainSetsRandomExt = "Random" + DomainSetsRecipesBaseExt = "RecipesBase" [deps.DomainSets.weakdeps] Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.7.0" -[[deps.EnumX]] -git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.7" - [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "8a4be429317c42cfae6a7fc03c31bad1970c310d" @@ -612,9 +557,9 @@ version = "0.0.20230411+1" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "d36f682e590a83d63d1c7dbd287573764682d12a" +git-tree-sha1 = "4e468f521e1f9f86891cb07186de5df90360a666" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.11" +version = "0.1.12" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -624,9 +569,9 @@ version = "2.8.1+0" [[deps.ExponentialFamily]] deps = ["BayesBase", "BlockArrays", "Distributions", "DomainSets", "FastCholesky", "FillArrays", "ForwardDiff", "HCubature", "HypergeometricFunctions", "IntervalSets", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "PositiveFactorizations", "Random", "SparseArrays", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "a6b9907170f8e7958e01ff0d31b6838022f4db2f" +git-tree-sha1 = "22a03af5898b5f988efdd835f40af831164f7d4b" uuid = "62312e5e-252a-4322-ace9-a5f4bf9b357b" -version = "2.5.0" +version = "2.7.1" [[deps.FFMPEG]] deps = ["FFMPEG_jll"] @@ -642,14 +587,18 @@ version = "8.1.2+0" [[deps.FastCholesky]] deps = ["LinearAlgebra", "PositiveFactorizations"] -git-tree-sha1 = "1c0a81e006e40e9fcbd5f6f6cb42ac2700f86889" +git-tree-sha1 = "02f0dc1afe2c0bb73a0881727a4bf771a19ec190" uuid = "2d5283b6-8564-42b6-bb00-83ed8e915756" -version = "1.4.3" -weakdeps = ["StaticArraysCore"] +version = "1.5.0" [deps.FastCholesky.extensions] + ReactantExt = "Reactant" StaticArraysCoreExt = "StaticArraysCore" + [deps.FastCholesky.weakdeps] + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] git-tree-sha1 = "4916117dd032ec5959b7633aedbbac408ca5ddeb" @@ -658,9 +607,9 @@ version = "1.3.0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "8e9c059d6857607253e837730dbf780b6b151acd" +git-tree-sha1 = "6621fef488e496356c9c9625d0562c12a6070819" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.19.0" +version = "1.20.0" weakdeps = ["HTTP"] [deps.FileIO.extensions] @@ -672,9 +621,9 @@ version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "2f979084d1e13948a3352cf64a25df6bd3b4dca3" +git-tree-sha1 = "417289ac840d201005d9ed16789a46defccbe36d" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.16.0" +version = "1.18.1" weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [deps.FillArrays.extensions] @@ -683,30 +632,6 @@ weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] FillArraysStaticArraysExt = "StaticArrays" FillArraysStatisticsExt = "Statistics" -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "2e5742cda07276e1834281ada4cc71b6bfc87586" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.31.1" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" - FiniteDiffSparseArraysExt = "SparseArrays" - FiniteDiffStaticArraysExt = "StaticArrays" - - [deps.FiniteDiff.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - -[[deps.FixedArguments]] -deps = ["TupleTools"] -git-tree-sha1 = "befa1ad59c77643dec6fc20d71fd6f5c3afcdadd" -uuid = "4130a065-6d82-41fe-881e-7a5c65156f7d" -version = "0.1.1" - [[deps.FixedPointNumbers]] deps = ["Random", "Statistics"] git-tree-sha1 = "59af96b98217c6ef4ae0dfe065ac7c20831d1a84" @@ -726,9 +651,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "2c5d0b0e12088cde2cf84afb2784415b1ea3dfee" +git-tree-sha1 = "3b0f72e2ffef1a139ac450725c9ecd01c0a3c050" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.4.1" +version = "1.4.6" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -752,10 +677,11 @@ git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" version = "0.1.2" -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" -version = "1.11.0" +[[deps.GCVMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "StandardMessagePassingRules", "StatsFuns"] +git-tree-sha1 = "b9d896eff3b7dd887b119675f96d210abc31f2a9" +uuid = "2bb838d1-ae36-49a2-8c64-82a0acccfa93" +version = "1.0.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] @@ -781,11 +707,16 @@ git-tree-sha1 = "6fada551286ab6ea4ca1628cb2de9f166a2ec966" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" version = "0.73.26+0" -[[deps.GaussQuadrature]] -deps = ["SpecialFunctions"] -git-tree-sha1 = "eb6f1f48aa994f3018cbd029a17863c6535a266d" -uuid = "d54b0c1a-921d-58e0-8e36-89d8069c0969" -version = "0.5.8" +[[deps.Gamma]] +git-tree-sha1 = "86f86b6168a016ed88e4ae4e64577b98c3b59e8e" +uuid = "a0844989-3bd2-4988-8bea-c9407ab0941b" +version = "1.1.0" + +[[deps.GaussianCouplingMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesBase"] +git-tree-sha1 = "73948ad868fa022db11c678aaf1415ddb762f219" +uuid = "a57ce80c-d854-4eb3-973d-f0d0550df039" +version = "1.0.0" [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] @@ -807,9 +738,9 @@ version = "2.86.3+0" [[deps.GraphPPL]] deps = ["BitSetTuples", "DataStructures", "Dictionaries", "MacroTools", "MetaGraphsNext", "NamedTupleTools", "Static", "StaticArrays", "TupleTools", "Unrolled"] -git-tree-sha1 = "ea4b12cf4e8b76e4c075898724b37915808cace1" +git-tree-sha1 = "2d10297851848d1b6dc1dc335e549068e7890477" uuid = "b3f8163a-e979-4e85-b43e-1f63d8c8b42c" -version = "4.8.0" +version = "4.9.0" [deps.GraphPPL.extensions] GraphPPLDistributionsExt = "Distributions" @@ -830,9 +761,9 @@ version = "1.3.16+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "DataStructures", "Inflate", "LinearAlgebra", "Random", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "7eb45fe833a5b7c51cf6d89c5a841d5967e44be3" +git-tree-sha1 = "dbb2b976f605b220dfe139d6db9f3859680da09e" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.14.0" +version = "1.15.0" [deps.Graphs.extensions] GraphsSharedArraysExt = "SharedArrays" @@ -870,10 +801,10 @@ uuid = "076d061b-32b6-4027-95e0-9a2c6f6d7e74" version = "0.2.0" [[deps.HypergeometricFunctions]] -deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" +deps = ["Gamma", "LinearAlgebra"] +git-tree-sha1 = "31bb6c92405c084617facc1d7ed9eb6c402d061e" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.28" +version = "0.3.30" [[deps.Hyperscript]] deps = ["Test"] @@ -914,26 +845,42 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" version = "1.11.0" [[deps.IntervalSets]] -git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" +git-tree-sha1 = "0db6aea5b64caa1c47e9fdd27394f0296f05e8bf" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.14" -weakdeps = ["Random", "RecipesBase", "Statistics"] +version = "0.7.15" [deps.IntervalSets.extensions] + IntervalSetsMakieExt = "Makie" IntervalSetsRandomExt = "Random" IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" + [deps.IntervalSets.weakdeps] + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + +[[deps.InverseFunctions]] +git-tree-sha1 = "5cc6ad3e2bfc75a11eed92632ee341d37f4a4536" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.18" +weakdeps = ["Dates", "Test"] + + [deps.InverseFunctions.extensions] + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" + [[deps.IrrationalConstants]] -git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" +git-tree-sha1 = "d22e8bdb3f03c300a103ff23c0dd5a654c6701de" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.6" +version = "0.2.7" [[deps.JLD2]] -deps = ["ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] -git-tree-sha1 = "941f87a0ae1b14d1ac2fa57245425b23a9d7a516" +deps = ["ChunkCodecCore", "ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] +git-tree-sha1 = "9ce2e7c49ae4a7035b7d60db3a553b1f6c16875d" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.6.4" +version = "0.6.7" [deps.JLD2.extensions] UnPackExt = "UnPack" @@ -955,9 +902,9 @@ version = "1.8.0" [[deps.JSON]] deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] -git-tree-sha1 = "c89d196f5ffb64bfbf80985b699ea913b0d2c211" +git-tree-sha1 = "9939eb6f799a963b3392ac4a1d49d3fc0646eb80" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "1.6.1" +version = "1.11.0" [deps.JSON.extensions] JSONArrowExt = ["ArrowTypes"] @@ -1017,24 +964,6 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "405e938379dbbdb24c0d93bd5b9600ecce03d11c" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.9.10" - - [deps.LazyArrays.extensions] - LazyArraysBandedMatricesExt = "BandedMatrices" - LazyArraysBlockArraysExt = "BlockArrays" - LazyArraysBlockBandedMatricesExt = "BlockBandedMatrices" - LazyArraysStaticArraysExt = "StaticArrays" - - [deps.LazyArrays.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" @@ -1100,12 +1029,6 @@ git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" version = "2.42.0+0" -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] -git-tree-sha1 = "cef1ba655e8c1f65af9d96c4fffe18bf1a3a3291" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.7.1" - [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" @@ -1175,6 +1098,18 @@ git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" version = "0.3.3" +[[deps.MessagePassingRulesApproximations]] +deps = ["Compat", "FastCholesky", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra"] +git-tree-sha1 = "0904181cd2a25ed85da53a3426af17f0fb7bb193" +uuid = "36043009-14b3-4068-9fb9-f1e492c92d7d" +version = "1.0.0" + +[[deps.MessagePassingRulesBase]] +deps = ["BayesBase", "Compat", "FastCholesky", "IrrationalConstants", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "386ffd59dc3b21d3d36542c41f7b0326c821813f" +uuid = "4a5b64c7-30c9-4471-82f2-bbe8464b157d" +version = "1.1.2" + [[deps.MetaGraphsNext]] deps = ["Graphs", "JLD2", "SimpleTraits"] git-tree-sha1 = "1983a06112db00c54e171f5cff8788c8efbdae85" @@ -1195,17 +1130,11 @@ version = "1.11.0" uuid = "14a3606d-f60d-562e-9121-12d972cd8159" version = "2025.11.4" -[[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "FiniteDiff", "LinearAlgebra"] -git-tree-sha1 = "b3f76b463c7998473062992b246045e6961a074e" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "8.0.0" - [[deps.NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "dbd2e8cd2c1c27f0b584f6661b4309609c5a685e" +git-tree-sha1 = "676c0f1c1c34224d6869675047a54b42fdc7b8c5" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.1.4" +version = "1.1.5" [[deps.NamedTupleTools]] git-tree-sha1 = "90914795fc59df44120fe3fff6742bb0d7adb1d0" @@ -1234,14 +1163,14 @@ version = "0.8.7+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "1d1aaa7d449b58415f97d2839c318b70ffb525a0" +git-tree-sha1 = "5caab1056e0734b87f62ae3a3b520d47d3e994e8" uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.6.1" +version = "1.7.0" [[deps.OpenSSL_jll]] deps = ["Artifacts", "Libdl"] uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.4+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1249,18 +1178,6 @@ git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.6+0" -[[deps.Optim]] -deps = ["ADTypes", "EnumX", "FillArrays", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "PositiveFactorizations", "Printf", "SparseArrays", "Statistics"] -git-tree-sha1 = "6fe140aab6c042a73c9d5dc280b87b32eee44f9f" -uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "2.2.1" - - [deps.Optim.extensions] - OptimMOIExt = "MathOptInterface" - - [deps.Optim.weakdeps] - MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" - [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "e2bb57a313a74b8104064b7efd01406c0a50d2ff" @@ -1279,9 +1196,9 @@ version = "10.44.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a680e58292816791211582a4d8e44353835e991f" +git-tree-sha1 = "123266c25174ef6c8d4718920abc206452cf8de6" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.38" +version = "0.11.41" weakdeps = ["StatsBase"] [deps.PDMats.extensions] @@ -1294,10 +1211,10 @@ uuid = "36c8627f-9965-5494-a995-c6b170f724f3" version = "1.57.1+0" [[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "32a4e09c5f29402573d673901778a0e03b0807b9" +deps = ["Dates", "PrecompileTools"] +git-tree-sha1 = "663e8b48b789916221e0765393b289ca6c88f24e" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.6" +version = "3.0.0" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1358,12 +1275,6 @@ git-tree-sha1 = "e189d0623e7ce9c37389bac17e80aac3b0302e75" uuid = "7f904dfe-b85e-4ff6-b463-dae2292396a8" version = "0.7.83" -[[deps.PolyaGammaHybridSamplers]] -deps = ["Distributions", "Random", "SpecialFunctions", "StatsFuns"] -git-tree-sha1 = "9f6139650ff57f9d8528cd809ebc604c7e9738b1" -uuid = "c636ee4f-4591-4d8c-9fae-2dea21daa433" -version = "1.2.6" - [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" @@ -1378,9 +1289,9 @@ version = "1.3.4" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "8b770b60760d4451834fe79dd483e318eee709c4" +git-tree-sha1 = "aef1987d90dcc2e2cbd919ad10b2d25bcce4f418" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.5.2" +version = "1.6.1" [[deps.Printf]] deps = ["Unicode"] @@ -1388,10 +1299,18 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" version = "1.11.0" [[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "fbb92c6c56b34e1a2c4c36058f68f332bec840e7" +deps = ["Printf"] +git-tree-sha1 = "ce5ba3edfdeba107a721748d53b5f5887f415853" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.11.0" +version = "1.13.0" + + [deps.ProgressMeter.extensions] + ProgressMeterDistributedExt = "Distributed" + ProgressMeterIJuliaExt = "IJulia" + + [deps.ProgressMeter.weakdeps] + Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" @@ -1451,18 +1370,16 @@ uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" version = "1.11.0" [[deps.ReactiveMP]] -deps = ["BayesBase", "DiffResults", "Distributions", "DomainIntegrals", "DomainSets", "ExponentialFamily", "FastCholesky", "FastGaussQuadrature", "FixedArguments", "ForwardDiff", "HCubature", "LazyArrays", "LinearAlgebra", "MacroTools", "MatrixCorrectionTools", "Optim", "PolyaGammaHybridSamplers", "PositiveFactorizations", "Random", "Rocket", "SpecialFunctions", "StatsBase", "StatsFuns", "TinyHugeNumbers", "Tullio", "TupleTools", "UUIDs"] -git-tree-sha1 = "e495df252e8564d65b215a2005684fe3a0deda93" +deps = ["BayesBase", "Compat", "Distributions", "LinearAlgebra", "MacroTools", "MessagePassingRulesBase", "Random", "Rocket", "TinyHugeNumbers", "TupleTools", "UUIDs"] +git-tree-sha1 = "944722ce6bfb8b1cdfb05a123afe9fe397fbd725" uuid = "a194aa59-28ba-4574-a09c-4a745416d6e3" -version = "6.3.0" +version = "7.0.0" [deps.ReactiveMP.extensions] - ReactiveMPOptimisersExt = "Optimisers" - ReactiveMPProjectionExt = "ExponentialFamilyProjection" + ReactiveMPReactantExt = "Reactant" [deps.ReactiveMP.weakdeps] - ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" - Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" [[deps.RecipesBase]] deps = ["PrecompileTools"] @@ -1501,15 +1418,15 @@ version = "0.9.0" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8" +git-tree-sha1 = "6d40b2fe70437b01397d2a4d5b020008da4e7019" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.5.1+0" +version = "0.5.2+0" [[deps.Rocket]] deps = ["DataStructures", "Sockets", "Unrolled"] -git-tree-sha1 = "12c8d9bb85176acf23057b679a894ea59eb922c8" +git-tree-sha1 = "ad8f448adaaedd25803f12bcff8d59a8a1dd8bbb" uuid = "df971d30-c9d6-4b37-b8ff-e965b2cb3a40" -version = "1.9.0" +version = "1.11.0" [deps.Rocket.extensions] RocketObservablesExt = "Observables" @@ -1517,20 +1434,46 @@ version = "1.9.0" [deps.Rocket.weakdeps] Observables = "510215fc-4207-5dde-b226-833fc4488ee2" +[[deps.Roots]] +deps = ["Accessors", "CommonSolve", "Printf"] +git-tree-sha1 = "e6ffa7bd4f8d0b8744d18f219304738d952f9a37" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "3.0.11" + + [deps.Roots.extensions] + RootsChainRulesCoreExt = "ChainRulesCore" + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + RootsUnitfulExt = "Unitful" + + [deps.Roots.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.RxInfer]] -deps = ["Base64", "BayesBase", "DataStructures", "Dates", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "Optim", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SparseArrays", "Static", "Statistics", "TupleTools", "UUIDs"] -git-tree-sha1 = "4098a13ad0db656071d6e71ff085cbec69300412" +deps = ["AutoregressiveMessagePassingRules", "Base64", "BayesBase", "DataStructures", "Dates", "DeltaMessagePassingRules", "DiscreteTransitionMessagePassingRules", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GCVMessagePassingRules", "GaussianCouplingMessagePassingRules", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "PrecompileTools", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SoftDotMessagePassingRules", "SparseArrays", "StandardMessagePassingRules", "Static", "Statistics", "TupleTools", "UUIDs"] +git-tree-sha1 = "cbb0595f742056ccab20beba5cf2a1253294c6dd" uuid = "86711068-29c9-4ff7-b620-ae75d7495b3d" -version = "5.5.0" +version = "6.1.0" [deps.RxInfer.extensions] + OptimExt = "Optim" PrettyTablesExt = "PrettyTables" ProjectionExt = "ExponentialFamilyProjection" + ReactantExt = "Reactant" TensorBoardLoggerExt = "TensorBoardLogger" [deps.RxInfer.weakdeps] ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.SHA]] @@ -1538,9 +1481,10 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLPublic]] -git-tree-sha1 = "912a1a941afb2a232183a485d86a437a25f88520" +deps = ["PrecompileTools"] +git-tree-sha1 = "74685afb51732a464fbce79a72708f7c4203ceb7" uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" -version = "1.2.0" +version = "1.3.0" [[deps.ScopedValues]] deps = ["HashArrayMappedTries", "Logging"] @@ -1558,12 +1502,6 @@ version = "1.3.0" uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" version = "1.11.0" -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "c5391c6ace3bc430ca630251d02ea9687169ca68" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.2" - [[deps.Showoff]] deps = ["Dates", "Grisu"] git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" @@ -1585,6 +1523,12 @@ version = "0.9.6" uuid = "6462fe0b-24de-5631-8697-dd941f90decc" version = "1.11.0" +[[deps.SoftDotMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "8ccebfa9b93d9908178cc0e97c4f4a480708740d" +uuid = "fdfab25d-afbd-4817-865a-cd280c067f5e" +version = "1.0.0" + [[deps.SortingAlgorithms]] deps = ["DataStructures"] git-tree-sha1 = "13cd91cc9be159e3f4d95b857fa2aa383b53772a" @@ -1598,9 +1542,9 @@ version = "1.12.0" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "6547cbdd8ce32efba0d21c5a40fa96d1a3548f9f" +git-tree-sha1 = "429071b23f4c9a13fb6582f807cc2ef454082408" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.8.0" +version = "2.9.0" [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" @@ -1614,17 +1558,23 @@ git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" +[[deps.StandardMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "LogExpFunctions", "MatrixCorrectionTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "SpecialFunctions", "StatsFuns"] +git-tree-sha1 = "ca7e44b8d9c49483dfab3fc5e91346d032cb7d45" +uuid = "d166223a-7879-43b1-add3-64af0a178e9e" +version = "1.0.0" + [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "cbc2fed5b692d12e199397471ba6c5988f69b629" +git-tree-sha1 = "474a5283ad435618090122872eea6a8165ea6bcf" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.4.1" +version = "1.4.6" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" +git-tree-sha1 = "8a8a52f887f38d44014e24ee46b8a7311c625f6d" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.18" +version = "1.9.24" [deps.StaticArrays.extensions] StaticArraysChainRulesCoreExt = "ChainRulesCore" @@ -1641,9 +1591,9 @@ version = "1.4.4" [[deps.Statistics]] deps = ["LinearAlgebra"] -git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" +git-tree-sha1 = "e2b53ce13a53367e96601081e33d34746b571bad" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.11.1" +version = "1.11.5" weakdeps = ["SparseArrays"] [deps.Statistics.extensions] @@ -1657,15 +1607,15 @@ version = "1.8.0" [[deps.StatsBase]] deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "e4d7a1a0edc20af42689ea6f4f3587a2175d50ee" +git-tree-sha1 = "adb9da019510162e67a4493fc235c23203d8b09e" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.12" +version = "0.34.13" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" +git-tree-sha1 = "0aa97471d55945556e8d2859568b8317cef98351" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.5.2" +version = "1.5.3" [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" @@ -1677,16 +1627,20 @@ version = "1.5.2" [[deps.StructUtils]] deps = ["Dates", "UUIDs"] -git-tree-sha1 = "82bee338d650aa515f31866c460cb7e3bcef90b8" +git-tree-sha1 = "ad435e30854ed0f50f4b7f67edd71664afecc5d8" uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" -version = "2.8.2" +version = "2.10.0" [deps.StructUtils.extensions] + StructUtilsDataFramesExt = ["DataFrames"] + StructUtilsLazilyInitializedFieldsExt = ["LazilyInitializedFields"] StructUtilsMeasurementsExt = ["Measurements"] StructUtilsStaticArraysCoreExt = ["StaticArraysCore"] StructUtilsTablesExt = ["Tables"] [deps.StructUtils.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazilyInitializedFields = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" @@ -1726,9 +1680,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" version = "1.11.0" [[deps.TinyHugeNumbers]] -git-tree-sha1 = "83c6abf376718345a85c071b249ef6692a8936d4" +git-tree-sha1 = "d5b24fd37550762d78280fb37c1800c3ea7e95cb" uuid = "783c9a47-75a3-44ac-a16b-f1ab7b3acf04" -version = "1.0.3" +version = "1.0.4" [[deps.TranscodingStreams]] git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" @@ -1740,33 +1694,16 @@ git-tree-sha1 = "311349fd1c93a31f783f977a71e8b062a57d4101" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.13" -[[deps.Tullio]] -deps = ["DiffRules", "LinearAlgebra", "Requires"] -git-tree-sha1 = "de0febfe1243e89f352abd4ca0e9de6c8e6190c5" -uuid = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc" -version = "0.3.9" - - [deps.Tullio.extensions] - TullioCUDAExt = "CUDA" - TullioChainRulesCoreExt = "ChainRulesCore" - TullioFillArraysExt = "FillArrays" - TullioTrackerExt = "Tracker" - - [deps.Tullio.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.TupleTools]] -git-tree-sha1 = "41e43b9dc950775eac654b9f845c839cd2f1821e" +git-tree-sha1 = "a1c7e924f746f0ebc792425e7d4d2ea5b4470697" uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" -version = "1.6.0" +version = "1.6.1" [[deps.URIs]] -git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" +deps = ["Serialization"] +git-tree-sha1 = "0392e5e3c5327b90a487b0ff3e818c4aecd3660b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.6.1" +version = "1.7.1" [[deps.UUIDs]] deps = ["Random", "SHA"] diff --git a/probprog/PP1 - Bayesian inference in conjugate models.jl b/probprog/PP1 - Bayesian inference in conjugate models.jl index 2476281c..c9efb00b 100644 --- a/probprog/PP1 - Bayesian inference in conjugate models.jl +++ b/probprog/PP1 - Bayesian inference in conjugate models.jl @@ -1,5 +1,5 @@ ### A Pluto.jl notebook ### -# v0.20.28 +# v1.0.3 using Markdown using InteractiveUtils @@ -911,53 +911,51 @@ SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" [compat] AbstractPlutoDingetjes = "~1.4.0" BmlipTeachingTools = "~1.4.1" -Distributions = "~0.25.127" +Distributions = "~0.25.132" HypertextLiteral = "~0.9.5" LaTeXStrings = "~1.4.0" Memoization = "~0.2.2" Plots = "~1.41.6" -RxInfer = "~5.5.0" -SpecialFunctions = "~2.8.0" +RxInfer = "~6.1.0" +SpecialFunctions = "~2.8.3" """ # ╔═╡ 00000000-0000-0000-0000-000000000002 PLUTO_MANIFEST_TOML_CONTENTS = """ # This file is machine-generated - editing it directly is not advised -julia_version = "1.12.6" +julia_version = "1.12.7" manifest_format = "2.0" -project_hash = "a537fdfe6cd417df17dd5017a8370c481618c433" - -[[deps.ADTypes]] -git-tree-sha1 = "d9aaef7c63466eee4de23b4d9dad03629df54bea" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.22.1" - - [deps.ADTypes.extensions] - ADTypesChainRulesCoreExt = "ChainRulesCore" - ADTypesConstructionBaseExt = "ConstructionBase" - ADTypesEnzymeCoreExt = "EnzymeCore" - - [deps.ADTypes.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" +project_hash = "910a112aa61e447cafc9f7cc6e11e2159aa9f8b5" [[deps.AbstractPlutoDingetjes]] git-tree-sha1 = "6c3913f4e9bdf6ba3c08041a446fb1332716cbc2" uuid = "6e696c72-6542-2067-7265-42206c756150" version = "1.4.0" -[[deps.Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "daa72978cd7a624246e894a4f4f067706d4e17e2" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.7.0" -weakdeps = ["SparseArrays", "StaticArrays"] +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "7063ad1083578215c7c4bf410368150abe8d5524" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.45" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" - [deps.Adapt.extensions] - AdaptSparseArraysExt = "SparseArrays" - AdaptStaticArraysExt = "StaticArrays" + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.AliasTables]] deps = ["PtrArrays", "Random"] @@ -975,47 +973,11 @@ git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" uuid = "ec485272-7323-5ecc-a04f-4719b315124d" version = "0.4.0" -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "3d0cabd25fab32390e3bcb82cd67e700aebd9816" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.25.0" - - [deps.ArrayInterface.extensions] - ArrayInterfaceAMDGPUExt = "AMDGPU" - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] - ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" - ArrayInterfaceChainRulesExt = "ChainRules" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceMetalExt = "Metal" - ArrayInterfaceReverseDiffExt = "ReverseDiff" - ArrayInterfaceSparseArraysExt = "SparseArrays" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" - ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "e0b47732a192dd59b9d079a06d04235e2f833963" +git-tree-sha1 = "b4a2d2dfcaedf8f0cb93a970c4ccba6f632f14cc" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.12.2" +version = "1.15.1" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -1025,15 +987,21 @@ weakdeps = ["SparseArrays"] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" version = "1.11.0" +[[deps.AutoregressiveMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "4c9f3f4edd4580e385535bce39a6a39f8f1a6aa9" +uuid = "bbb8872a-15f9-43f6-924d-37f12d04ed53" +version = "1.0.0" + [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" version = "1.11.0" [[deps.BayesBase]] deps = ["Distributions", "DomainSets", "LinearAlgebra", "Random", "SpecialFunctions", "StaticArrays", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "e644fb61dcc7b0df1be931230d2b9bc3a96d912f" +git-tree-sha1 = "cadec5ad37b53e1198f36524b30297fc0df98aae" uuid = "b4ee3484-f114-42fe-b91c-797d54a0c67e" -version = "1.5.9" +version = "1.5.12" weakdeps = ["FastCholesky"] [deps.BayesBase.extensions] @@ -1052,9 +1020,9 @@ version = "1.1.5" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "0f606a9894e2bcda541ceb82a91a13c5d450ed97" +git-tree-sha1 = "876d4c4b941cc8b079da79c88d9c2dee52b9dd13" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "1.9.3" +version = "1.10.3" [deps.BlockArrays.extensions] BlockArraysAdaptExt = "Adapt" @@ -1083,15 +1051,15 @@ uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.18.7+0" [[deps.ChunkCodecCore]] -git-tree-sha1 = "1a3ad7e16a321667698a19e77362b35a1e94c544" +git-tree-sha1 = "3496e2b359c27793d12bec54ec94be7983a6ceb2" uuid = "0b6fb165-00bc-4d37-ab8b-79f91016dbe1" -version = "1.0.1" +version = "1.0.2" [[deps.ChunkCodecLibZlib]] deps = ["ChunkCodecCore", "Zlib_jll"] -git-tree-sha1 = "cee8104904c53d39eb94fd06cbe60cb5acde7177" +git-tree-sha1 = "d4101e848e8d3f585d61d244c2fe0c80a70e6b3b" uuid = "4c0bbee4-addc-4d73-81a0-b6caacae83c8" -version = "1.0.0" +version = "1.1.0" [[deps.ChunkCodecLibZstd]] deps = ["ChunkCodecCore", "Zstd_jll"] @@ -1101,9 +1069,9 @@ version = "1.0.0" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" +git-tree-sha1 = "970758a3d591a2a5c2a907c53f2e2f8c1b1d3537" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.8" +version = "0.7.9" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -1142,6 +1110,12 @@ git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" version = "1.1.0" +[[deps.CommonSolve]] +deps = ["PrecompileTools"] +git-tree-sha1 = "6c389fa857f6ca5a95474b52a52023fd77f24cb7" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.14" + [[deps.CommonSubexpressions]] deps = ["MacroTools"] git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" @@ -1149,25 +1123,45 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" [[deps.CommonWorldInvalidations]] -git-tree-sha1 = "f1697a56da59e8a2cefcbbfe71c13354a6f18c61" +deps = ["PrecompileTools"] +git-tree-sha1 = "7c4ea0adfb7238bf4678aa36325863fab6163f6f" uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" -version = "1.1.0" +version = "1.2.2" + +[[deps.Compat]] +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" +uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" +version = "4.18.1" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.3.0+1" +version = "1.3.1+2" [[deps.CompositeTypes]] git-tree-sha1 = "bce26c3dab336582805503bed209faab1c279768" uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657" version = "0.1.4" +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" +git-tree-sha1 = "d5e5fa1f0d6ca517edbbcd734efa93c6639405b0" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.5.1" +version = "2.7.1" [[deps.ConstructionBase]] git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" @@ -1192,9 +1186,9 @@ version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "6fb53a69613a0b2b68a0d12671717d307ab8b24e" +git-tree-sha1 = "b0bc6d2cad1fed8b7fd59a1551a991cb3d2809e6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.5" +version = "0.19.6" [[deps.Dates]] deps = ["Printf"] @@ -1213,6 +1207,18 @@ git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" +[[deps.DeltaMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase"] +git-tree-sha1 = "eb4eafdd796377c6dfc1e842363291c5db8525c6" +uuid = "ea5de7a7-24c9-4a61-90ce-ef77c844b13f" +version = "1.0.0" + + [deps.DeltaMessagePassingRules.extensions] + DeltaMessagePassingRulesProjectionExt = "ExponentialFamilyProjection" + + [deps.DeltaMessagePassingRules.weakdeps] + ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + [[deps.Dictionaries]] deps = ["Indexing", "Random", "Serialization"] git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" @@ -1231,69 +1237,17 @@ git-tree-sha1 = "79a2aca180a85c690c58a020d47b426954b590f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.16.0" -[[deps.DifferentiationInterface]] -deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "2147a95a217cc8a78ec96ee03581adf129468e49" -uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.18" - - [deps.DifferentiationInterface.extensions] - DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" - DifferentiationInterfaceDiffractorExt = "Diffractor" - DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] - DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" - DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" - DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" - DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] - DifferentiationInterfaceGTPSAExt = "GTPSA" - DifferentiationInterfaceHyperHessiansExt = "HyperHessians" - DifferentiationInterfaceMooncakeExt = "Mooncake" - DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] - DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] - DifferentiationInterfaceSparseArraysExt = "SparseArrays" - DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" - DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" - DifferentiationInterfaceStaticArraysExt = "StaticArrays" - DifferentiationInterfaceSymbolicsExt = "Symbolics" - DifferentiationInterfaceTrackerExt = "Tracker" - DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] - - [deps.DifferentiationInterface.weakdeps] - Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" - Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" - FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" - HyperHessians = "06b494a0-c8e0-40cc-ad32-d99506a00a6c" - Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" - SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Distributed]] -deps = ["Random", "Serialization", "Sockets"] -uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" -version = "1.11.0" +[[deps.DiscreteTransitionMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase"] +git-tree-sha1 = "1bf03a659aa103303f73a2ef40d74c206b02305a" +uuid = "039b7295-e235-4523-a933-c224bd9a7e58" +version = "1.0.0" [[deps.Distributions]] -deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "3c8a0a9a6d4a10bdfb6b751bd2b6051ed3e25fd4" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "Roots", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2ddbc341251ed713d39e503b504593a5d6789551" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.127" +version = "0.25.132" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -1312,36 +1266,27 @@ git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" -[[deps.DomainIntegrals]] -deps = ["CompositeTypes", "DomainSets", "FastGaussQuadrature", "FunctionMaps", "GaussQuadrature", "HCubature", "IntervalSets", "LinearAlgebra", "QuadGK", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "e90efe58cabfd58984ba5ba8edaf440251233384" -uuid = "cc6bae93-f070-4015-88fd-838f9505a86c" -version = "0.5.4" - [[deps.DomainSets]] deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "4599e0cd684f3ff6cbbab73c77553a3d01a8d74d" +git-tree-sha1 = "6ac879a64381881dc24f96a15e13e80204439906" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.18" +version = "0.8.3" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" DomainSetsRandomExt = "Random" + DomainSetsRecipesBaseExt = "RecipesBase" [deps.DomainSets.weakdeps] Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.7.0" -[[deps.EnumX]] -git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.7" - [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "8a4be429317c42cfae6a7fc03c31bad1970c310d" @@ -1350,9 +1295,9 @@ version = "0.0.20230411+1" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "d36f682e590a83d63d1c7dbd287573764682d12a" +git-tree-sha1 = "4e468f521e1f9f86891cb07186de5df90360a666" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.11" +version = "0.1.12" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1362,9 +1307,9 @@ version = "2.8.1+0" [[deps.ExponentialFamily]] deps = ["BayesBase", "BlockArrays", "Distributions", "DomainSets", "FastCholesky", "FillArrays", "ForwardDiff", "HCubature", "HypergeometricFunctions", "IntervalSets", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "PositiveFactorizations", "Random", "SparseArrays", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "a6b9907170f8e7958e01ff0d31b6838022f4db2f" +git-tree-sha1 = "22a03af5898b5f988efdd835f40af831164f7d4b" uuid = "62312e5e-252a-4322-ace9-a5f4bf9b357b" -version = "2.5.0" +version = "2.7.1" [[deps.FFMPEG]] deps = ["FFMPEG_jll"] @@ -1380,14 +1325,18 @@ version = "8.1.2+0" [[deps.FastCholesky]] deps = ["LinearAlgebra", "PositiveFactorizations"] -git-tree-sha1 = "1c0a81e006e40e9fcbd5f6f6cb42ac2700f86889" +git-tree-sha1 = "02f0dc1afe2c0bb73a0881727a4bf771a19ec190" uuid = "2d5283b6-8564-42b6-bb00-83ed8e915756" -version = "1.4.3" -weakdeps = ["StaticArraysCore"] +version = "1.5.0" [deps.FastCholesky.extensions] + ReactantExt = "Reactant" StaticArraysCoreExt = "StaticArraysCore" + [deps.FastCholesky.weakdeps] + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] git-tree-sha1 = "4916117dd032ec5959b7633aedbbac408ca5ddeb" @@ -1396,9 +1345,9 @@ version = "1.3.0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "8e9c059d6857607253e837730dbf780b6b151acd" +git-tree-sha1 = "6621fef488e496356c9c9625d0562c12a6070819" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.19.0" +version = "1.20.0" weakdeps = ["HTTP"] [deps.FileIO.extensions] @@ -1410,9 +1359,9 @@ version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "2f979084d1e13948a3352cf64a25df6bd3b4dca3" +git-tree-sha1 = "417289ac840d201005d9ed16789a46defccbe36d" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.16.0" +version = "1.18.1" weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [deps.FillArrays.extensions] @@ -1421,30 +1370,6 @@ weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] FillArraysStaticArraysExt = "StaticArrays" FillArraysStatisticsExt = "Statistics" -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "2e5742cda07276e1834281ada4cc71b6bfc87586" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.31.1" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" - FiniteDiffSparseArraysExt = "SparseArrays" - FiniteDiffStaticArraysExt = "StaticArrays" - - [deps.FiniteDiff.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - -[[deps.FixedArguments]] -deps = ["TupleTools"] -git-tree-sha1 = "befa1ad59c77643dec6fc20d71fd6f5c3afcdadd" -uuid = "4130a065-6d82-41fe-881e-7a5c65156f7d" -version = "0.1.1" - [[deps.FixedPointNumbers]] deps = ["Random", "Statistics"] git-tree-sha1 = "59af96b98217c6ef4ae0dfe065ac7c20831d1a84" @@ -1464,9 +1389,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "2c5d0b0e12088cde2cf84afb2784415b1ea3dfee" +git-tree-sha1 = "3b0f72e2ffef1a139ac450725c9ecd01c0a3c050" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.4.1" +version = "1.4.6" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -1490,10 +1415,11 @@ git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" version = "0.1.2" -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" -version = "1.11.0" +[[deps.GCVMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "StandardMessagePassingRules", "StatsFuns"] +git-tree-sha1 = "b9d896eff3b7dd887b119675f96d210abc31f2a9" +uuid = "2bb838d1-ae36-49a2-8c64-82a0acccfa93" +version = "1.0.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] @@ -1519,11 +1445,16 @@ git-tree-sha1 = "6fada551286ab6ea4ca1628cb2de9f166a2ec966" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" version = "0.73.26+0" -[[deps.GaussQuadrature]] -deps = ["SpecialFunctions"] -git-tree-sha1 = "eb6f1f48aa994f3018cbd029a17863c6535a266d" -uuid = "d54b0c1a-921d-58e0-8e36-89d8069c0969" -version = "0.5.8" +[[deps.Gamma]] +git-tree-sha1 = "86f86b6168a016ed88e4ae4e64577b98c3b59e8e" +uuid = "a0844989-3bd2-4988-8bea-c9407ab0941b" +version = "1.1.0" + +[[deps.GaussianCouplingMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesBase"] +git-tree-sha1 = "73948ad868fa022db11c678aaf1415ddb762f219" +uuid = "a57ce80c-d854-4eb3-973d-f0d0550df039" +version = "1.0.0" [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] @@ -1545,9 +1476,9 @@ version = "2.86.3+0" [[deps.GraphPPL]] deps = ["BitSetTuples", "DataStructures", "Dictionaries", "MacroTools", "MetaGraphsNext", "NamedTupleTools", "Static", "StaticArrays", "TupleTools", "Unrolled"] -git-tree-sha1 = "ea4b12cf4e8b76e4c075898724b37915808cace1" +git-tree-sha1 = "2d10297851848d1b6dc1dc335e549068e7890477" uuid = "b3f8163a-e979-4e85-b43e-1f63d8c8b42c" -version = "4.8.0" +version = "4.9.0" [deps.GraphPPL.extensions] GraphPPLDistributionsExt = "Distributions" @@ -1568,9 +1499,9 @@ version = "1.3.16+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "DataStructures", "Inflate", "LinearAlgebra", "Random", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "7eb45fe833a5b7c51cf6d89c5a841d5967e44be3" +git-tree-sha1 = "dbb2b976f605b220dfe139d6db9f3859680da09e" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.14.0" +version = "1.15.0" [deps.Graphs.extensions] GraphsSharedArraysExt = "SharedArrays" @@ -1608,10 +1539,10 @@ uuid = "076d061b-32b6-4027-95e0-9a2c6f6d7e74" version = "0.2.0" [[deps.HypergeometricFunctions]] -deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" +deps = ["Gamma", "LinearAlgebra"] +git-tree-sha1 = "31bb6c92405c084617facc1d7ed9eb6c402d061e" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.28" +version = "0.3.30" [[deps.Hyperscript]] deps = ["Test"] @@ -1652,26 +1583,42 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" version = "1.11.0" [[deps.IntervalSets]] -git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" +git-tree-sha1 = "0db6aea5b64caa1c47e9fdd27394f0296f05e8bf" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.14" -weakdeps = ["Random", "RecipesBase", "Statistics"] +version = "0.7.15" [deps.IntervalSets.extensions] + IntervalSetsMakieExt = "Makie" IntervalSetsRandomExt = "Random" IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" + [deps.IntervalSets.weakdeps] + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + +[[deps.InverseFunctions]] +git-tree-sha1 = "5cc6ad3e2bfc75a11eed92632ee341d37f4a4536" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.18" +weakdeps = ["Dates", "Test"] + + [deps.InverseFunctions.extensions] + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" + [[deps.IrrationalConstants]] -git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" +git-tree-sha1 = "d22e8bdb3f03c300a103ff23c0dd5a654c6701de" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.6" +version = "0.2.7" [[deps.JLD2]] -deps = ["ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] -git-tree-sha1 = "941f87a0ae1b14d1ac2fa57245425b23a9d7a516" +deps = ["ChunkCodecCore", "ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] +git-tree-sha1 = "9ce2e7c49ae4a7035b7d60db3a553b1f6c16875d" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.6.4" +version = "0.6.7" [deps.JLD2.extensions] UnPackExt = "UnPack" @@ -1693,9 +1640,9 @@ version = "1.8.0" [[deps.JSON]] deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] -git-tree-sha1 = "c89d196f5ffb64bfbf80985b699ea913b0d2c211" +git-tree-sha1 = "9939eb6f799a963b3392ac4a1d49d3fc0646eb80" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "1.6.1" +version = "1.11.0" [deps.JSON.extensions] JSONArrowExt = ["ArrowTypes"] @@ -1755,24 +1702,6 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "405e938379dbbdb24c0d93bd5b9600ecce03d11c" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.9.10" - - [deps.LazyArrays.extensions] - LazyArraysBandedMatricesExt = "BandedMatrices" - LazyArraysBlockArraysExt = "BlockArrays" - LazyArraysBlockBandedMatricesExt = "BlockBandedMatrices" - LazyArraysStaticArraysExt = "StaticArrays" - - [deps.LazyArrays.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" @@ -1838,12 +1767,6 @@ git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" version = "2.42.0+0" -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] -git-tree-sha1 = "cef1ba655e8c1f65af9d96c4fffe18bf1a3a3291" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.7.1" - [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" @@ -1919,6 +1842,18 @@ git-tree-sha1 = "7dbf904fa6c4447bd1f1d316886bfbe29feacf45" uuid = "6fafb56a-5788-4b4e-91ca-c0cea6611c73" version = "0.2.2" +[[deps.MessagePassingRulesApproximations]] +deps = ["Compat", "FastCholesky", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra"] +git-tree-sha1 = "0904181cd2a25ed85da53a3426af17f0fb7bb193" +uuid = "36043009-14b3-4068-9fb9-f1e492c92d7d" +version = "1.0.0" + +[[deps.MessagePassingRulesBase]] +deps = ["BayesBase", "Compat", "FastCholesky", "IrrationalConstants", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "386ffd59dc3b21d3d36542c41f7b0326c821813f" +uuid = "4a5b64c7-30c9-4471-82f2-bbe8464b157d" +version = "1.1.2" + [[deps.MetaGraphsNext]] deps = ["Graphs", "JLD2", "SimpleTraits"] git-tree-sha1 = "1983a06112db00c54e171f5cff8788c8efbdae85" @@ -1939,17 +1874,11 @@ version = "1.11.0" uuid = "14a3606d-f60d-562e-9121-12d972cd8159" version = "2025.11.4" -[[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "FiniteDiff", "LinearAlgebra"] -git-tree-sha1 = "b3f76b463c7998473062992b246045e6961a074e" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "8.0.0" - [[deps.NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "dbd2e8cd2c1c27f0b584f6661b4309609c5a685e" +git-tree-sha1 = "676c0f1c1c34224d6869675047a54b42fdc7b8c5" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.1.4" +version = "1.1.5" [[deps.NamedTupleTools]] git-tree-sha1 = "90914795fc59df44120fe3fff6742bb0d7adb1d0" @@ -1978,14 +1907,14 @@ version = "0.8.7+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "1d1aaa7d449b58415f97d2839c318b70ffb525a0" +git-tree-sha1 = "5caab1056e0734b87f62ae3a3b520d47d3e994e8" uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.6.1" +version = "1.7.0" [[deps.OpenSSL_jll]] deps = ["Artifacts", "Libdl"] uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.4+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1993,18 +1922,6 @@ git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.6+0" -[[deps.Optim]] -deps = ["ADTypes", "EnumX", "FillArrays", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "PositiveFactorizations", "Printf", "SparseArrays", "Statistics"] -git-tree-sha1 = "6fe140aab6c042a73c9d5dc280b87b32eee44f9f" -uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "2.2.1" - - [deps.Optim.extensions] - OptimMOIExt = "MathOptInterface" - - [deps.Optim.weakdeps] - MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" - [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "e2bb57a313a74b8104064b7efd01406c0a50d2ff" @@ -2023,9 +1940,9 @@ version = "10.44.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a680e58292816791211582a4d8e44353835e991f" +git-tree-sha1 = "123266c25174ef6c8d4718920abc206452cf8de6" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.38" +version = "0.11.41" weakdeps = ["StatsBase"] [deps.PDMats.extensions] @@ -2038,10 +1955,10 @@ uuid = "36c8627f-9965-5494-a995-c6b170f724f3" version = "1.57.1+0" [[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "32a4e09c5f29402573d673901778a0e03b0807b9" +deps = ["Dates", "PrecompileTools"] +git-tree-sha1 = "663e8b48b789916221e0765393b289ca6c88f24e" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.6" +version = "3.0.0" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -2102,12 +2019,6 @@ git-tree-sha1 = "e189d0623e7ce9c37389bac17e80aac3b0302e75" uuid = "7f904dfe-b85e-4ff6-b463-dae2292396a8" version = "0.7.83" -[[deps.PolyaGammaHybridSamplers]] -deps = ["Distributions", "Random", "SpecialFunctions", "StatsFuns"] -git-tree-sha1 = "9f6139650ff57f9d8528cd809ebc604c7e9738b1" -uuid = "c636ee4f-4591-4d8c-9fae-2dea21daa433" -version = "1.2.6" - [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" @@ -2122,9 +2033,9 @@ version = "1.3.4" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "8b770b60760d4451834fe79dd483e318eee709c4" +git-tree-sha1 = "aef1987d90dcc2e2cbd919ad10b2d25bcce4f418" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.5.2" +version = "1.6.1" [[deps.Printf]] deps = ["Unicode"] @@ -2132,10 +2043,18 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" version = "1.11.0" [[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "fbb92c6c56b34e1a2c4c36058f68f332bec840e7" +deps = ["Printf"] +git-tree-sha1 = "ce5ba3edfdeba107a721748d53b5f5887f415853" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.11.0" +version = "1.13.0" + + [deps.ProgressMeter.extensions] + ProgressMeterDistributedExt = "Distributed" + ProgressMeterIJuliaExt = "IJulia" + + [deps.ProgressMeter.weakdeps] + Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" @@ -2195,18 +2114,16 @@ uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" version = "1.11.0" [[deps.ReactiveMP]] -deps = ["BayesBase", "DiffResults", "Distributions", "DomainIntegrals", "DomainSets", "ExponentialFamily", "FastCholesky", "FastGaussQuadrature", "FixedArguments", "ForwardDiff", "HCubature", "LazyArrays", "LinearAlgebra", "MacroTools", "MatrixCorrectionTools", "Optim", "PolyaGammaHybridSamplers", "PositiveFactorizations", "Random", "Rocket", "SpecialFunctions", "StatsBase", "StatsFuns", "TinyHugeNumbers", "Tullio", "TupleTools", "UUIDs"] -git-tree-sha1 = "e495df252e8564d65b215a2005684fe3a0deda93" +deps = ["BayesBase", "Compat", "Distributions", "LinearAlgebra", "MacroTools", "MessagePassingRulesBase", "Random", "Rocket", "TinyHugeNumbers", "TupleTools", "UUIDs"] +git-tree-sha1 = "944722ce6bfb8b1cdfb05a123afe9fe397fbd725" uuid = "a194aa59-28ba-4574-a09c-4a745416d6e3" -version = "6.3.0" +version = "7.0.0" [deps.ReactiveMP.extensions] - ReactiveMPOptimisersExt = "Optimisers" - ReactiveMPProjectionExt = "ExponentialFamilyProjection" + ReactiveMPReactantExt = "Reactant" [deps.ReactiveMP.weakdeps] - ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" - Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" [[deps.RecipesBase]] deps = ["PrecompileTools"] @@ -2245,15 +2162,15 @@ version = "0.9.0" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8" +git-tree-sha1 = "6d40b2fe70437b01397d2a4d5b020008da4e7019" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.5.1+0" +version = "0.5.2+0" [[deps.Rocket]] deps = ["DataStructures", "Sockets", "Unrolled"] -git-tree-sha1 = "12c8d9bb85176acf23057b679a894ea59eb922c8" +git-tree-sha1 = "ad8f448adaaedd25803f12bcff8d59a8a1dd8bbb" uuid = "df971d30-c9d6-4b37-b8ff-e965b2cb3a40" -version = "1.9.0" +version = "1.11.0" [deps.Rocket.extensions] RocketObservablesExt = "Observables" @@ -2261,20 +2178,46 @@ version = "1.9.0" [deps.Rocket.weakdeps] Observables = "510215fc-4207-5dde-b226-833fc4488ee2" +[[deps.Roots]] +deps = ["Accessors", "CommonSolve", "Printf"] +git-tree-sha1 = "e6ffa7bd4f8d0b8744d18f219304738d952f9a37" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "3.0.11" + + [deps.Roots.extensions] + RootsChainRulesCoreExt = "ChainRulesCore" + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + RootsUnitfulExt = "Unitful" + + [deps.Roots.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.RxInfer]] -deps = ["Base64", "BayesBase", "DataStructures", "Dates", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "Optim", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SparseArrays", "Static", "Statistics", "TupleTools", "UUIDs"] -git-tree-sha1 = "4098a13ad0db656071d6e71ff085cbec69300412" +deps = ["AutoregressiveMessagePassingRules", "Base64", "BayesBase", "DataStructures", "Dates", "DeltaMessagePassingRules", "DiscreteTransitionMessagePassingRules", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GCVMessagePassingRules", "GaussianCouplingMessagePassingRules", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "PrecompileTools", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SoftDotMessagePassingRules", "SparseArrays", "StandardMessagePassingRules", "Static", "Statistics", "TupleTools", "UUIDs"] +git-tree-sha1 = "cbb0595f742056ccab20beba5cf2a1253294c6dd" uuid = "86711068-29c9-4ff7-b620-ae75d7495b3d" -version = "5.5.0" +version = "6.1.0" [deps.RxInfer.extensions] + OptimExt = "Optim" PrettyTablesExt = "PrettyTables" ProjectionExt = "ExponentialFamilyProjection" + ReactantExt = "Reactant" TensorBoardLoggerExt = "TensorBoardLogger" [deps.RxInfer.weakdeps] ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.SHA]] @@ -2282,9 +2225,10 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLPublic]] -git-tree-sha1 = "912a1a941afb2a232183a485d86a437a25f88520" +deps = ["PrecompileTools"] +git-tree-sha1 = "74685afb51732a464fbce79a72708f7c4203ceb7" uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" -version = "1.2.0" +version = "1.3.0" [[deps.ScopedValues]] deps = ["HashArrayMappedTries", "Logging"] @@ -2302,12 +2246,6 @@ version = "1.3.0" uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" version = "1.11.0" -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "c5391c6ace3bc430ca630251d02ea9687169ca68" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.2" - [[deps.Showoff]] deps = ["Dates", "Grisu"] git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" @@ -2329,6 +2267,12 @@ version = "0.9.6" uuid = "6462fe0b-24de-5631-8697-dd941f90decc" version = "1.11.0" +[[deps.SoftDotMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "8ccebfa9b93d9908178cc0e97c4f4a480708740d" +uuid = "fdfab25d-afbd-4817-865a-cd280c067f5e" +version = "1.0.0" + [[deps.SortingAlgorithms]] deps = ["DataStructures"] git-tree-sha1 = "13cd91cc9be159e3f4d95b857fa2aa383b53772a" @@ -2342,9 +2286,9 @@ version = "1.12.0" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "6547cbdd8ce32efba0d21c5a40fa96d1a3548f9f" +git-tree-sha1 = "c3ac026e735264e9bdc6a9bcbd1b1e781b36e3bc" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.8.0" +version = "2.8.3" [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" @@ -2358,17 +2302,23 @@ git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" +[[deps.StandardMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "LogExpFunctions", "MatrixCorrectionTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "SpecialFunctions", "StatsFuns"] +git-tree-sha1 = "ca7e44b8d9c49483dfab3fc5e91346d032cb7d45" +uuid = "d166223a-7879-43b1-add3-64af0a178e9e" +version = "1.0.0" + [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "cbc2fed5b692d12e199397471ba6c5988f69b629" +git-tree-sha1 = "474a5283ad435618090122872eea6a8165ea6bcf" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.4.1" +version = "1.4.6" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" +git-tree-sha1 = "8a8a52f887f38d44014e24ee46b8a7311c625f6d" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.18" +version = "1.9.24" [deps.StaticArrays.extensions] StaticArraysChainRulesCoreExt = "ChainRulesCore" @@ -2385,9 +2335,9 @@ version = "1.4.4" [[deps.Statistics]] deps = ["LinearAlgebra"] -git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" +git-tree-sha1 = "e2b53ce13a53367e96601081e33d34746b571bad" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.11.1" +version = "1.11.5" weakdeps = ["SparseArrays"] [deps.Statistics.extensions] @@ -2401,15 +2351,15 @@ version = "1.8.0" [[deps.StatsBase]] deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "e4d7a1a0edc20af42689ea6f4f3587a2175d50ee" +git-tree-sha1 = "adb9da019510162e67a4493fc235c23203d8b09e" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.12" +version = "0.34.13" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" +git-tree-sha1 = "0aa97471d55945556e8d2859568b8317cef98351" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.5.2" +version = "1.5.3" [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" @@ -2421,16 +2371,20 @@ version = "1.5.2" [[deps.StructUtils]] deps = ["Dates", "UUIDs"] -git-tree-sha1 = "82bee338d650aa515f31866c460cb7e3bcef90b8" +git-tree-sha1 = "ad435e30854ed0f50f4b7f67edd71664afecc5d8" uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" -version = "2.8.2" +version = "2.10.0" [deps.StructUtils.extensions] + StructUtilsDataFramesExt = ["DataFrames"] + StructUtilsLazilyInitializedFieldsExt = ["LazilyInitializedFields"] StructUtilsMeasurementsExt = ["Measurements"] StructUtilsStaticArraysCoreExt = ["StaticArraysCore"] StructUtilsTablesExt = ["Tables"] [deps.StructUtils.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazilyInitializedFields = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" @@ -2470,9 +2424,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" version = "1.11.0" [[deps.TinyHugeNumbers]] -git-tree-sha1 = "83c6abf376718345a85c071b249ef6692a8936d4" +git-tree-sha1 = "d5b24fd37550762d78280fb37c1800c3ea7e95cb" uuid = "783c9a47-75a3-44ac-a16b-f1ab7b3acf04" -version = "1.0.3" +version = "1.0.4" [[deps.TranscodingStreams]] git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" @@ -2484,33 +2438,16 @@ git-tree-sha1 = "311349fd1c93a31f783f977a71e8b062a57d4101" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.13" -[[deps.Tullio]] -deps = ["DiffRules", "LinearAlgebra", "Requires"] -git-tree-sha1 = "de0febfe1243e89f352abd4ca0e9de6c8e6190c5" -uuid = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc" -version = "0.3.9" - - [deps.Tullio.extensions] - TullioCUDAExt = "CUDA" - TullioChainRulesCoreExt = "ChainRulesCore" - TullioFillArraysExt = "FillArrays" - TullioTrackerExt = "Tracker" - - [deps.Tullio.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.TupleTools]] -git-tree-sha1 = "41e43b9dc950775eac654b9f845c839cd2f1821e" +git-tree-sha1 = "a1c7e924f746f0ebc792425e7d4d2ea5b4470697" uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" -version = "1.6.0" +version = "1.6.1" [[deps.URIs]] -git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" +deps = ["Serialization"] +git-tree-sha1 = "0392e5e3c5327b90a487b0ff3e818c4aecd3660b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.6.1" +version = "1.7.1" [[deps.UUIDs]] deps = ["Random", "SHA"] diff --git a/probprog/PP2 - Bayesian regression and classification.jl b/probprog/PP2 - Bayesian regression and classification.jl index e6b95597..aa121e69 100644 --- a/probprog/PP2 - Bayesian regression and classification.jl +++ b/probprog/PP2 - Bayesian regression and classification.jl @@ -1,5 +1,5 @@ ### A Pluto.jl notebook ### -# v0.20.28 +# v1.0.3 using Markdown using InteractiveUtils @@ -660,12 +660,12 @@ StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" [compat] BmlipTeachingTools = "~1.4.1" -CSV = "~0.10.16" +CSV = "~0.10.17" DataFrames = "~1.8.2" -Distributions = "~0.25.127" -Plots = "~1.41.6" -RxInfer = "~5.5.0" -StatsFuns = "~1.5.2" +Distributions = "~0.25.132" +Plots = "~1.41.7" +RxInfer = "~6.1.0" +StatsFuns = "~1.5.3" StatsPlots = "~0.15.8" """ @@ -673,24 +673,9 @@ StatsPlots = "~0.15.8" PLUTO_MANIFEST_TOML_CONTENTS = """ # This file is machine-generated - editing it directly is not advised -julia_version = "1.12.6" +julia_version = "1.12.7" manifest_format = "2.0" -project_hash = "743846efaaf1ba8bc013da482a7ac67618d25649" - -[[deps.ADTypes]] -git-tree-sha1 = "d9aaef7c63466eee4de23b4d9dad03629df54bea" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.22.1" - - [deps.ADTypes.extensions] - ADTypesChainRulesCoreExt = "ChainRulesCore" - ADTypesConstructionBaseExt = "ConstructionBase" - ADTypesEnzymeCoreExt = "EnzymeCore" - - [deps.ADTypes.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" +project_hash = "d19734c214ff2cb291611fc3a7fd625ffe1c198a" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -704,20 +689,44 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractPlutoDingetjes]] -git-tree-sha1 = "6c3913f4e9bdf6ba3c08041a446fb1332716cbc2" +git-tree-sha1 = "e71ee7b4aa06b045259a7d6101e1cb45ad140bce" uuid = "6e696c72-6542-2067-7265-42206c756150" -version = "1.4.0" +version = "1.4.1" [[deps.AbstractTrees]] git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.5" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "7063ad1083578215c7c4bf410368150abe8d5524" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.45" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.Adapt]] deps = ["LinearAlgebra"] -git-tree-sha1 = "daa72978cd7a624246e894a4f4f067706d4e17e2" +git-tree-sha1 = "dee8388a9bec89c8713ad176f96960ae2f98598a" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.7.0" +version = "4.7.4" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -752,47 +761,11 @@ git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.2+0" -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "3d0cabd25fab32390e3bcb82cd67e700aebd9816" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.25.0" - - [deps.ArrayInterface.extensions] - ArrayInterfaceAMDGPUExt = "AMDGPU" - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] - ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" - ArrayInterfaceChainRulesExt = "ChainRules" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceMetalExt = "Metal" - ArrayInterfaceReverseDiffExt = "ReverseDiff" - ArrayInterfaceSparseArraysExt = "SparseArrays" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" - ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "e0b47732a192dd59b9d079a06d04235e2f833963" +git-tree-sha1 = "b4a2d2dfcaedf8f0cb93a970c4ccba6f632f14cc" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.12.2" +version = "1.15.1" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -802,6 +775,12 @@ weakdeps = ["SparseArrays"] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" version = "1.11.0" +[[deps.AutoregressiveMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "4c9f3f4edd4580e385535bce39a6a39f8f1a6aa9" +uuid = "bbb8872a-15f9-43f6-924d-37f12d04ed53" +version = "1.0.0" + [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" @@ -814,19 +793,14 @@ version = "1.11.0" [[deps.BayesBase]] deps = ["Distributions", "DomainSets", "LinearAlgebra", "Random", "SpecialFunctions", "StaticArrays", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "e644fb61dcc7b0df1be931230d2b9bc3a96d912f" +git-tree-sha1 = "cadec5ad37b53e1198f36524b30297fc0df98aae" uuid = "b4ee3484-f114-42fe-b91c-797d54a0c67e" -version = "1.5.9" +version = "1.5.12" weakdeps = ["FastCholesky"] [deps.BayesBase.extensions] FastCholeskyExt = "FastCholesky" -[[deps.BitFlags]] -git-tree-sha1 = "bbe1079eecf9c9fbb52765193ad2bae27ae09bc8" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.10" - [[deps.BitSetTuples]] deps = ["TupleTools"] git-tree-sha1 = "aa19428fb6ad21db22f8568f068de4f443d3bacc" @@ -835,9 +809,9 @@ version = "1.1.5" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "0f606a9894e2bcda541ceb82a91a13c5d450ed97" +git-tree-sha1 = "876d4c4b941cc8b079da79c88d9c2dee52b9dd13" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "1.9.3" +version = "1.10.3" [deps.BlockArrays.extensions] BlockArraysAdaptExt = "Adapt" @@ -861,36 +835,36 @@ version = "1.0.9+0" [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "8d8e0b0f350b8e1c91420b5e64e5de774c2f0f4d" +git-tree-sha1 = "abed1e735dd4152f48c90cf0767e1790e25f332f" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.16" +version = "0.10.17" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "1fa950ebc3e37eccd51c6a8fe1f92f7d86263522" +git-tree-sha1 = "0cfb779e24fdced77a05df1dbe99200821a9f563" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.7+0" +version = "1.18.8+1" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "4378c3544d8fcc3c8a521782db0e93e2c32d1838" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.1" +version = "1.26.4" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChunkCodecCore]] -git-tree-sha1 = "1a3ad7e16a321667698a19e77362b35a1e94c544" +git-tree-sha1 = "3496e2b359c27793d12bec54ec94be7983a6ceb2" uuid = "0b6fb165-00bc-4d37-ab8b-79f91016dbe1" -version = "1.0.1" +version = "1.0.2" [[deps.ChunkCodecLibZlib]] deps = ["ChunkCodecCore", "Zlib_jll"] -git-tree-sha1 = "cee8104904c53d39eb94fd06cbe60cb5acde7177" +git-tree-sha1 = "d4101e848e8d3f585d61d244c2fe0c80a70e6b3b" uuid = "4c0bbee4-addc-4d73-81a0-b6caacae83c8" -version = "1.0.0" +version = "1.1.0" [[deps.ChunkCodecLibZstd]] deps = ["ChunkCodecCore", "Zstd_jll"] @@ -906,9 +880,9 @@ version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" +git-tree-sha1 = "970758a3d591a2a5c2a907c53f2e2f8c1b1d3537" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.8" +version = "0.7.9" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -918,9 +892,9 @@ version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" +git-tree-sha1 = "a7cf827a79b378a381e31e5c7feca853ec19cb94" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.12.1" +version = "0.12.4" weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] @@ -937,16 +911,22 @@ weakdeps = ["SpecialFunctions"] SpecialFunctionsExt = "SpecialFunctions" [[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Reexport"] +git-tree-sha1 = "a633156e74096f90b3b5e833529292b651b5671a" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.13.1" +version = "0.13.3" [[deps.Combinatorics]] git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" version = "1.1.0" +[[deps.CommonSolve]] +deps = ["PrecompileTools"] +git-tree-sha1 = "6c389fa857f6ca5a95474b52a52023fd77f24cb7" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.14" + [[deps.CommonSubexpressions]] deps = ["MacroTools"] git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" @@ -954,9 +934,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" [[deps.CommonWorldInvalidations]] -git-tree-sha1 = "f1697a56da59e8a2cefcbbfe71c13354a6f18c61" +deps = ["PrecompileTools"] +git-tree-sha1 = "7c4ea0adfb7238bf4678aa36325863fab6163f6f" uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" -version = "1.1.0" +version = "1.2.2" [[deps.Compat]] deps = ["TOML", "UUIDs"] @@ -971,18 +952,21 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.3.0+1" +version = "1.3.1+2" [[deps.CompositeTypes]] git-tree-sha1 = "bce26c3dab336582805503bed209faab1c279768" uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657" version = "0.1.4" -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.5.1" +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" [[deps.ConstructionBase]] git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" @@ -1001,9 +985,9 @@ uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" [[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +git-tree-sha1 = "54b76cbb40d9a0f5368c880725b2f141da77c94f" uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" +version = "4.2.0" [[deps.DataAPI]] git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" @@ -1018,9 +1002,9 @@ version = "1.8.2" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "6fb53a69613a0b2b68a0d12671717d307ab8b24e" +git-tree-sha1 = "b0bc6d2cad1fed8b7fd59a1551a991cb3d2809e6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.5" +version = "0.19.6" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -1044,6 +1028,18 @@ git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" +[[deps.DeltaMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase"] +git-tree-sha1 = "eb4eafdd796377c6dfc1e842363291c5db8525c6" +uuid = "ea5de7a7-24c9-4a61-90ce-ef77c844b13f" +version = "1.0.0" + + [deps.DeltaMessagePassingRules.extensions] + DeltaMessagePassingRulesProjectionExt = "ExponentialFamilyProjection" + + [deps.DeltaMessagePassingRules.weakdeps] + ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + [[deps.Dictionaries]] deps = ["Indexing", "Random", "Serialization"] git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" @@ -1062,58 +1058,11 @@ git-tree-sha1 = "79a2aca180a85c690c58a020d47b426954b590f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.16.0" -[[deps.DifferentiationInterface]] -deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "2147a95a217cc8a78ec96ee03581adf129468e49" -uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.18" - - [deps.DifferentiationInterface.extensions] - DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" - DifferentiationInterfaceDiffractorExt = "Diffractor" - DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] - DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" - DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" - DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" - DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] - DifferentiationInterfaceGTPSAExt = "GTPSA" - DifferentiationInterfaceHyperHessiansExt = "HyperHessians" - DifferentiationInterfaceMooncakeExt = "Mooncake" - DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] - DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] - DifferentiationInterfaceSparseArraysExt = "SparseArrays" - DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" - DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" - DifferentiationInterfaceStaticArraysExt = "StaticArrays" - DifferentiationInterfaceSymbolicsExt = "Symbolics" - DifferentiationInterfaceTrackerExt = "Tracker" - DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] - - [deps.DifferentiationInterface.weakdeps] - Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" - Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" - FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" - HyperHessians = "06b494a0-c8e0-40cc-ad32-d99506a00a6c" - Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" - SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.DiscreteTransitionMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase"] +git-tree-sha1 = "1bf03a659aa103303f73a2ef40d74c206b02305a" +uuid = "039b7295-e235-4523-a933-c224bd9a7e58" +version = "1.0.0" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] @@ -1132,10 +1081,10 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" version = "1.11.0" [[deps.Distributions]] -deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "3c8a0a9a6d4a10bdfb6b751bd2b6051ed3e25fd4" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "Roots", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2ddbc341251ed713d39e503b504593a5d6789551" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.127" +version = "0.25.132" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -1154,25 +1103,21 @@ git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" -[[deps.DomainIntegrals]] -deps = ["CompositeTypes", "DomainSets", "FastGaussQuadrature", "FunctionMaps", "GaussQuadrature", "HCubature", "IntervalSets", "LinearAlgebra", "QuadGK", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "e90efe58cabfd58984ba5ba8edaf440251233384" -uuid = "cc6bae93-f070-4015-88fd-838f9505a86c" -version = "0.5.4" - [[deps.DomainSets]] deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "4599e0cd684f3ff6cbbab73c77553a3d01a8d74d" +git-tree-sha1 = "6ac879a64381881dc24f96a15e13e80204439906" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.18" +version = "0.8.3" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" DomainSetsRandomExt = "Random" + DomainSetsRecipesBaseExt = "RecipesBase" [deps.DomainSets.weakdeps] Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] @@ -1190,35 +1135,29 @@ git-tree-sha1 = "8a4be429317c42cfae6a7fc03c31bad1970c310d" uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" version = "0.0.20230411+1" -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "d36f682e590a83d63d1c7dbd287573764682d12a" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.11" - [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c307cd83373868391f3ac30b41530bc5d5d05d08" +git-tree-sha1 = "d0f666deaf8099a7d7ac229a74402ada88898be1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.8.1+0" +version = "2.9.0+0" [[deps.ExponentialFamily]] deps = ["BayesBase", "BlockArrays", "Distributions", "DomainSets", "FastCholesky", "FillArrays", "ForwardDiff", "HCubature", "HypergeometricFunctions", "IntervalSets", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "PositiveFactorizations", "Random", "SparseArrays", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "a6b9907170f8e7958e01ff0d31b6838022f4db2f" +git-tree-sha1 = "22a03af5898b5f988efdd835f40af831164f7d4b" uuid = "62312e5e-252a-4322-ace9-a5f4bf9b357b" -version = "2.5.0" +version = "2.7.1" [[deps.FFMPEG]] deps = ["FFMPEG_jll"] -git-tree-sha1 = "95ecf07c2eea562b5adbd0696af6db62c0f52560" +git-tree-sha1 = "7bd13840b4148949e290748071bbe6826b3eabcd" uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.5" +version = "0.4.6" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "7a58e45171b63ed4782f2d36fdee8713a469e6e0" +git-tree-sha1 = "d9d3cd382f2c999f684e6bfa4039fcc16c153b6f" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.1.2+0" +version = "9.0.2+0" [[deps.FFTA]] deps = ["AbstractFFTs", "DocStringExtensions", "LinearAlgebra", "MuladdMacro", "Primes", "Random", "Reexport"] @@ -1228,14 +1167,18 @@ version = "0.3.1" [[deps.FastCholesky]] deps = ["LinearAlgebra", "PositiveFactorizations"] -git-tree-sha1 = "1c0a81e006e40e9fcbd5f6f6cb42ac2700f86889" +git-tree-sha1 = "02f0dc1afe2c0bb73a0881727a4bf771a19ec190" uuid = "2d5283b6-8564-42b6-bb00-83ed8e915756" -version = "1.4.3" -weakdeps = ["StaticArraysCore"] +version = "1.5.0" [deps.FastCholesky.extensions] + ReactantExt = "Reactant" StaticArraysCoreExt = "StaticArraysCore" + [deps.FastCholesky.weakdeps] + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] git-tree-sha1 = "4916117dd032ec5959b7633aedbbac408ca5ddeb" @@ -1244,9 +1187,9 @@ version = "1.3.0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "8e9c059d6857607253e837730dbf780b6b151acd" +git-tree-sha1 = "6621fef488e496356c9c9625d0562c12a6070819" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.19.0" +version = "1.20.0" weakdeps = ["HTTP"] [deps.FileIO.extensions] @@ -1269,9 +1212,9 @@ version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "2f979084d1e13948a3352cf64a25df6bd3b4dca3" +git-tree-sha1 = "417289ac840d201005d9ed16789a46defccbe36d" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.16.0" +version = "1.18.1" weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [deps.FillArrays.extensions] @@ -1280,30 +1223,6 @@ weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] FillArraysStaticArraysExt = "StaticArrays" FillArraysStatisticsExt = "Statistics" -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "2e5742cda07276e1834281ada4cc71b6bfc87586" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.31.1" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" - FiniteDiffSparseArraysExt = "SparseArrays" - FiniteDiffStaticArraysExt = "StaticArrays" - - [deps.FiniteDiff.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - -[[deps.FixedArguments]] -deps = ["TupleTools"] -git-tree-sha1 = "befa1ad59c77643dec6fc20d71fd6f5c3afcdadd" -uuid = "4130a065-6d82-41fe-881e-7a5c65156f7d" -version = "0.1.1" - [[deps.FixedPointNumbers]] deps = ["Random", "Statistics"] git-tree-sha1 = "59af96b98217c6ef4ae0dfe065ac7c20831d1a84" @@ -1312,9 +1231,9 @@ version = "0.8.6" [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] -git-tree-sha1 = "f85dac9a96a01087df6e3a749840015a0ca3817d" +git-tree-sha1 = "e1e9ba3a8f5d71e6ae698f138a1362aeabb42e9f" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.17.1+0" +version = "2.18.3+0" [[deps.Format]] git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" @@ -1323,9 +1242,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "2c5d0b0e12088cde2cf84afb2784415b1ea3dfee" +git-tree-sha1 = "3b0f72e2ffef1a139ac450725c9ecd01c0a3c050" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.4.1" +version = "1.4.6" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -1333,15 +1252,15 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" +git-tree-sha1 = "d95a7a3a7e0f2fffc6291bd33035830aab01310b" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.14.3+1" +version = "2.15.0+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" +git-tree-sha1 = "f3f50c8001bdfa84f312234fa86715b7c9243771" uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.17+0" +version = "1.0.18+0" [[deps.FunctionMaps]] deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] @@ -1354,17 +1273,23 @@ deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" version = "1.11.0" +[[deps.GCVMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "StandardMessagePassingRules", "StatsFuns"] +git-tree-sha1 = "b9d896eff3b7dd887b119675f96d210abc31f2a9" +uuid = "2bb838d1-ae36-49a2-8c64-82a0acccfa93" +version = "1.0.0" + [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" +git-tree-sha1 = "64bbbb7d1499297751b536dd39c58b20750ab1db" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+1" +version = "3.5.1+0" [[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "f954322d5de03ec630d177cda203dcd92b6be399" +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "4d777f73c46b46b8b5276206059cf8a195499314" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.26" +version = "0.73.27" [deps.GR.extensions] IJuliaExt = "IJulia" @@ -1374,15 +1299,20 @@ version = "0.73.26" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "6fada551286ab6ea4ca1628cb2de9f166a2ec966" +git-tree-sha1 = "f8eb8f7ba13ea75083531647fc8faeda8d541f07" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.26+0" +version = "0.73.27+0" -[[deps.GaussQuadrature]] -deps = ["SpecialFunctions"] -git-tree-sha1 = "eb6f1f48aa994f3018cbd029a17863c6535a266d" -uuid = "d54b0c1a-921d-58e0-8e36-89d8069c0969" -version = "0.5.8" +[[deps.Gamma]] +git-tree-sha1 = "86f86b6168a016ed88e4ae4e64577b98c3b59e8e" +uuid = "a0844989-3bd2-4988-8bea-c9407ab0941b" +version = "1.1.0" + +[[deps.GaussianCouplingMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesBase"] +git-tree-sha1 = "73948ad868fa022db11c678aaf1415ddb762f219" +uuid = "a57ce80c-d854-4eb3-973d-f0d0550df039" +version = "1.0.0" [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] @@ -1398,15 +1328,15 @@ version = "9.55.1+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "24f6def62397474a297bfcec22384101609142ed" +git-tree-sha1 = "ea9f1fb37ff10597353b56f3ba0ebd525acef6e0" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.86.3+0" +version = "2.90.1+0" [[deps.GraphPPL]] deps = ["BitSetTuples", "DataStructures", "Dictionaries", "MacroTools", "MetaGraphsNext", "NamedTupleTools", "Static", "StaticArrays", "TupleTools", "Unrolled"] -git-tree-sha1 = "ea4b12cf4e8b76e4c075898724b37915808cace1" +git-tree-sha1 = "2d10297851848d1b6dc1dc335e549068e7890477" uuid = "b3f8163a-e979-4e85-b43e-1f63d8c8b42c" -version = "4.8.0" +version = "4.9.0" [deps.GraphPPL.extensions] GraphPPLDistributionsExt = "Distributions" @@ -1427,19 +1357,14 @@ version = "1.3.16+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "DataStructures", "Inflate", "LinearAlgebra", "Random", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "7eb45fe833a5b7c51cf6d89c5a841d5967e44be3" +git-tree-sha1 = "dbb2b976f605b220dfe139d6db9f3859680da09e" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.14.0" +version = "1.15.0" weakdeps = ["Distributed", "SharedArrays"] [deps.Graphs.extensions] GraphsSharedArraysExt = "SharedArrays" -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" - [[deps.HCubature]] deps = ["Combinatorics", "DataStructures", "LinearAlgebra", "QuadGK", "StaticArrays"] git-tree-sha1 = "8ee627fb73ecba0b5254158b04d4745611b404a1" @@ -1447,16 +1372,16 @@ uuid = "19dc6840-f33b-545b-b366-655c7e3ffd49" version = "1.8.0" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "51059d23c8bb67911a2e6fd5130229113735fc7e" +deps = ["Base64", "CodecZlib", "Dates", "EnumX", "Logging", "PrecompileTools", "Random", "Reseau", "SHA", "URIs", "UUIDs", "Zlib_jll"] +git-tree-sha1 = "33d8e43f09dce4d79b076f3022e96063db806df3" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.11.0" +version = "2.11.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] -git-tree-sha1 = "f923f9a774fcf3f5cb761bfa43aeadd689714813" +git-tree-sha1 = "9e544f0758a2341e7e782fde6f3f67610366661c" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "8.5.1+0" +version = "100.14006.0+0" [[deps.HashArrayMappedTries]] git-tree-sha1 = "2eaa69a7cab70a52b9687c8bf950a5a93ec895ae" @@ -1464,10 +1389,10 @@ uuid = "076d061b-32b6-4027-95e0-9a2c6f6d7e74" version = "0.2.0" [[deps.HypergeometricFunctions]] -deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" +deps = ["Gamma", "LinearAlgebra"] +git-tree-sha1 = "31bb6c92405c084617facc1d7ed9eb6c402d061e" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.28" +version = "0.3.30" [[deps.Hyperscript]] deps = ["Test"] @@ -1503,9 +1428,9 @@ uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" version = "0.1.5" [[deps.InlineStrings]] -git-tree-sha1 = "8f3d257792a522b4601c24a577954b0a8cd7334d" +git-tree-sha1 = "06b65886c7577a3784d616e29f1302c2e36e389d" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.5" +version = "1.4.6" [deps.InlineStrings.extensions] ArrowTypesExt = "ArrowTypes" @@ -1516,9 +1441,9 @@ version = "1.4.5" Parsers = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" [[deps.IntegerMathUtils]] -git-tree-sha1 = "4c1acff2dc6b6967e7e750633c50bc3b8d83e617" +git-tree-sha1 = "c72458f1962faeb003bf23cbdb75164fe6280906" uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" -version = "0.1.3" +version = "0.1.4" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -1540,25 +1465,41 @@ version = "0.16.3" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.IntervalSets]] -git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" +git-tree-sha1 = "0db6aea5b64caa1c47e9fdd27394f0296f05e8bf" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.14" -weakdeps = ["Random", "RecipesBase", "Statistics"] +version = "0.7.15" [deps.IntervalSets.extensions] + IntervalSetsMakieExt = "Makie" IntervalSetsRandomExt = "Random" IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" + [deps.IntervalSets.weakdeps] + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + +[[deps.InverseFunctions]] +git-tree-sha1 = "5cc6ad3e2bfc75a11eed92632ee341d37f4a4536" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.18" +weakdeps = ["Dates", "Test"] + + [deps.InverseFunctions.extensions] + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" + [[deps.InvertedIndices]] git-tree-sha1 = "6da3c4316095de0f5ee2ebd875df8721e7e0bdbe" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" version = "1.3.1" [[deps.IrrationalConstants]] -git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" +git-tree-sha1 = "d22e8bdb3f03c300a103ff23c0dd5a654c6701de" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.6" +version = "0.2.7" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -1566,10 +1507,10 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLD2]] -deps = ["ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] -git-tree-sha1 = "941f87a0ae1b14d1ac2fa57245425b23a9d7a516" +deps = ["ChunkCodecCore", "ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] +git-tree-sha1 = "9ce2e7c49ae4a7035b7d60db3a553b1f6c16875d" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.6.4" +version = "0.6.7" [deps.JLD2.extensions] UnPackExt = "UnPack" @@ -1591,9 +1532,9 @@ version = "1.8.0" [[deps.JSON]] deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] -git-tree-sha1 = "c89d196f5ffb64bfbf80985b699ea913b0d2c211" +git-tree-sha1 = "9939eb6f799a963b3392ac4a1d49d3fc0646eb80" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "1.6.1" +version = "1.11.0" [deps.JSON.extensions] JSONArrowExt = ["ArrowTypes"] @@ -1603,9 +1544,9 @@ version = "1.6.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" +git-tree-sha1 = "037babc10853eeb8e585418922246cb97b8e5b74" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.5+0" +version = "3.2.0+1" [[deps.JuliaSyntaxHighlighting]] deps = ["StyledStrings"] @@ -1626,26 +1567,26 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" +git-tree-sha1 = "39bca05343661c347aae0bca57a5994a0bf4f08d" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.1.0+0" +version = "4.2.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" +git-tree-sha1 = "e5b100780d4d30d63b4618d7930d48af409c1772" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "18.1.8+0" +version = "23.1.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" +git-tree-sha1 = "f88f3ccef05a6a72a0cf0ed417c8fd68530f4ab2" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.4.0" +version = "1.4.1" [[deps.Latexify]] deps = ["Format", "Ghostscript_jll", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] -git-tree-sha1 = "44f93c47f9cd6c7e431f2f2091fcba8f01cd7e8f" +git-tree-sha1 = "df7566479bd64f20bd16b09960145e70160ffb3b" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.10" +version = "0.16.12" [deps.Latexify.extensions] DataFramesExt = "DataFrames" @@ -1659,24 +1600,6 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "405e938379dbbdb24c0d93bd5b9600ecce03d11c" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.9.10" - - [deps.LazyArrays.extensions] - LazyArraysBandedMatricesExt = "BandedMatrices" - LazyArraysBlockArraysExt = "BlockArrays" - LazyArraysBlockBandedMatricesExt = "BlockBandedMatrices" - LazyArraysStaticArraysExt = "StaticArrays" - - [deps.LazyArrays.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" @@ -1726,27 +1649,21 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" +git-tree-sha1 = "b8a91037379e1fd661e9b5ff3d7a770424b1f9f2" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.42.0+0" +version = "2.42.4+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "f04133fe05eff1667d2054c53d59f9122383fe05" +git-tree-sha1 = "aebd334d06cee9f24cea70bd19a39749daf73881" uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.7.2+0" +version = "4.7.3+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" +git-tree-sha1 = "9e887184f306b28dbfcff88cefbb0ec80f1aa9e0" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.42.0+0" - -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] -git-tree-sha1 = "cef1ba655e8c1f65af9d96c4fffe18bf1a3a3291" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.7.1" +version = "2.42.4+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -1773,12 +1690,6 @@ version = "0.3.29" uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" version = "1.11.0" -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "f00544d95982ea270145636c181ceda21c4e2575" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.2.0" - [[deps.MIMEs]] git-tree-sha1 = "c64d943587f7187e751162b3b84445bbbd79f691" uuid = "6c6e2e6c-3030-632d-7369-2d6c69616d65" @@ -1800,23 +1711,23 @@ git-tree-sha1 = "73f93b21eae5714c282396bfae9d9f13d6ad04b6" uuid = "41f81499-25de-46de-b591-c3cfc21e9eaf" version = "1.2.0" -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] -git-tree-sha1 = "8785729fa736197687541f7053f6d8ab7fc44f92" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.10" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "ff69a2b1330bcb730b9ac1ab7dd680176f5896b8" -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.1010+0" - [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" version = "0.3.3" +[[deps.MessagePassingRulesApproximations]] +deps = ["Compat", "FastCholesky", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra"] +git-tree-sha1 = "0904181cd2a25ed85da53a3426af17f0fb7bb193" +uuid = "36043009-14b3-4068-9fb9-f1e492c92d7d" +version = "1.0.0" + +[[deps.MessagePassingRulesBase]] +deps = ["BayesBase", "Compat", "FastCholesky", "IrrationalConstants", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "386ffd59dc3b21d3d36542c41f7b0326c821813f" +uuid = "4a5b64c7-30c9-4471-82f2-bbe8464b157d" +version = "1.1.2" + [[deps.MetaGraphsNext]] deps = ["Graphs", "JLD2", "SimpleTraits"] git-tree-sha1 = "1983a06112db00c54e171f5cff8788c8efbdae85" @@ -1839,27 +1750,21 @@ version = "2025.11.4" [[deps.MuladdMacro]] deps = ["PrecompileTools"] -git-tree-sha1 = "21f3ab73a0bc592a809713fd97cfd3cb5669153e" +git-tree-sha1 = "283bf85d4a767481dd924dff0eee1735e95f449e" uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" -version = "0.2.5" +version = "0.2.7" [[deps.MultivariateStats]] deps = ["Arpack", "Distributions", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "7c3ff68a904d0f7404e5d2f7f5bc667934d8d616" +git-tree-sha1 = "8bcdc90d5c361a73635ad1c19d9c39a52bf3e0a3" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.4" - -[[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "FiniteDiff", "LinearAlgebra"] -git-tree-sha1 = "b3f76b463c7998473062992b246045e6961a074e" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "8.0.0" +version = "0.10.5" [[deps.NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "dbd2e8cd2c1c27f0b584f6661b4309609c5a685e" +git-tree-sha1 = "676c0f1c1c34224d6869675047a54b42fdc7b8c5" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.1.4" +version = "1.1.5" [[deps.NamedTupleTools]] git-tree-sha1 = "90914795fc59df44120fe3fff6742bb0d7adb1d0" @@ -1868,9 +1773,9 @@ version = "0.14.3" [[deps.NearestNeighbors]] deps = ["AbstractTrees", "Distances", "StaticArrays"] -git-tree-sha1 = "e2c3bba08dd6dedfe17a17889131b885b8c082f0" +git-tree-sha1 = "576eb4656529c12e77a46b17c23103dfba9fa570" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.27" +version = "0.4.29" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" @@ -1906,16 +1811,10 @@ deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" version = "0.8.7+0" -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "1d1aaa7d449b58415f97d2839c318b70ffb525a0" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.6.1" - [[deps.OpenSSL_jll]] deps = ["Artifacts", "Libdl"] uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.4+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1923,18 +1822,6 @@ git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.6+0" -[[deps.Optim]] -deps = ["ADTypes", "EnumX", "FillArrays", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "PositiveFactorizations", "Printf", "SparseArrays", "Statistics"] -git-tree-sha1 = "6fe140aab6c042a73c9d5dc280b87b32eee44f9f" -uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "2.2.1" - - [deps.Optim.extensions] - OptimMOIExt = "MathOptInterface" - - [deps.Optim.weakdeps] - MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" - [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "e2bb57a313a74b8104064b7efd01406c0a50d2ff" @@ -1942,9 +1829,9 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.6.1+0" [[deps.OrderedCollections]] -git-tree-sha1 = "94ba93778373a53bfd5a0caaf7d809c445292ff4" +git-tree-sha1 = "b079a6affebde167dad8ffe0d670b53917fbcb68" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.8.2" +version = "2.0.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1953,9 +1840,9 @@ version = "10.44.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a680e58292816791211582a4d8e44353835e991f" +git-tree-sha1 = "123266c25174ef6c8d4718920abc206452cf8de6" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.38" +version = "0.11.41" weakdeps = ["StatsBase"] [deps.PDMats.extensions] @@ -1963,15 +1850,15 @@ weakdeps = ["StatsBase"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" +git-tree-sha1 = "1912a9f1b9ca55005b03ba075f8e19993583e237" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.1+0" +version = "1.58.2+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "32a4e09c5f29402573d673901778a0e03b0807b9" +git-tree-sha1 = "ba0dc8a8a67cacac4842631f960c046e4e563675" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.6" +version = "2.8.8" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1995,16 +1882,16 @@ uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" version = "3.3.0" [[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "StableRNGs", "Statistics"] -git-tree-sha1 = "26ca162858917496748aad52bb5d3be4d26a228a" +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Reexport", "Statistics"] +git-tree-sha1 = "ddcc36fd83fb4cd459a53c891981697bde0d3de6" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.4.4" +version = "1.5.1" [[deps.Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "cb20a4eacda080e517e4deb9cfb6c7c518131265" +git-tree-sha1 = "83bd514e8ff16b5858ac54c53fa0bcf6002a3b00" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.41.6" +version = "1.41.7" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -2032,12 +1919,6 @@ git-tree-sha1 = "e189d0623e7ce9c37389bac17e80aac3b0302e75" uuid = "7f904dfe-b85e-4ff6-b463-dae2292396a8" version = "0.7.83" -[[deps.PolyaGammaHybridSamplers]] -deps = ["Distributions", "Random", "SpecialFunctions", "StatsFuns"] -git-tree-sha1 = "9f6139650ff57f9d8528cd809ebc604c7e9738b1" -uuid = "c636ee4f-4591-4d8c-9fae-2dea21daa433" -version = "1.2.6" - [[deps.PooledArrays]] deps = ["DataAPI", "Future"] git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" @@ -2058,15 +1939,25 @@ version = "1.3.4" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "8b770b60760d4451834fe79dd483e318eee709c4" +git-tree-sha1 = "aef1987d90dcc2e2cbd919ad10b2d25bcce4f418" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.5.2" +version = "1.6.1" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "1101cd475833706e4d0e7b122218257178f48f34" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "REPL", "Reexport", "StringManipulation", "StyledStrings", "Tables"] +git-tree-sha1 = "99fd8f32ab6728ff205cddd24e2d9ea6cbb498d3" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.4.0" +version = "3.5.0" + + [deps.PrettyTables.extensions] + PrettyTablesExcelExt = "XLSX" + PrettyTablesTypstryExt = "Typstry" + PrettyTablesWriteDocxExt = "WriteDocx" + + [deps.PrettyTables.weakdeps] + Typstry = "f0ed7684-a786-439e-b1e3-3b82803b501e" + WriteDocx = "d049ceea-54ee-41d7-a26f-ba29db3b6599" + XLSX = "fdbf4ff8-1666-58a4-91e7-1b58723a45e0" [[deps.Primes]] deps = ["IntegerMathUtils"] @@ -2080,10 +1971,18 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" version = "1.11.0" [[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "fbb92c6c56b34e1a2c4c36058f68f332bec840e7" +deps = ["Printf"] +git-tree-sha1 = "ce5ba3edfdeba107a721748d53b5f5887f415853" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.11.0" +version = "1.13.0" + + [deps.ProgressMeter.extensions] + ProgressMeterDistributedExt = "Distributed" + ProgressMeterIJuliaExt = "IJulia" + + [deps.ProgressMeter.weakdeps] + Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" @@ -2153,24 +2052,22 @@ weakdeps = ["FixedPointNumbers"] RatiosFixedPointNumbersExt = "FixedPointNumbers" [[deps.ReactiveMP]] -deps = ["BayesBase", "DiffResults", "Distributions", "DomainIntegrals", "DomainSets", "ExponentialFamily", "FastCholesky", "FastGaussQuadrature", "FixedArguments", "ForwardDiff", "HCubature", "LazyArrays", "LinearAlgebra", "MacroTools", "MatrixCorrectionTools", "Optim", "PolyaGammaHybridSamplers", "PositiveFactorizations", "Random", "Rocket", "SpecialFunctions", "StatsBase", "StatsFuns", "TinyHugeNumbers", "Tullio", "TupleTools", "UUIDs"] -git-tree-sha1 = "e495df252e8564d65b215a2005684fe3a0deda93" +deps = ["BayesBase", "Compat", "Distributions", "LinearAlgebra", "MacroTools", "MessagePassingRulesBase", "Random", "Rocket", "TinyHugeNumbers", "TupleTools", "UUIDs"] +git-tree-sha1 = "944722ce6bfb8b1cdfb05a123afe9fe397fbd725" uuid = "a194aa59-28ba-4574-a09c-4a745416d6e3" -version = "6.3.0" +version = "7.0.0" [deps.ReactiveMP.extensions] - ReactiveMPOptimisersExt = "Optimisers" - ReactiveMPProjectionExt = "ExponentialFamilyProjection" + ReactiveMPReactantExt = "Reactant" [deps.ReactiveMP.weakdeps] - ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" - Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" [[deps.RecipesBase]] deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +git-tree-sha1 = "0c0dcffc464cda2ff33fc8ffc1dd1bdd53cd98be" uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" +version = "1.4.0" [[deps.RecipesPipeline]] deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] @@ -2195,6 +2092,12 @@ git-tree-sha1 = "62389eeff14780bfe55195b7204c0d8738436d64" uuid = "ae029012-a4dd-5104-9daa-d747884805df" version = "1.3.1" +[[deps.Reseau]] +deps = ["NetworkOptions", "OpenSSL_jll", "PrecompileTools", "Random", "SHA"] +git-tree-sha1 = "c1332beecf9cf267e99b83ab878a3460f047964f" +uuid = "802f3686-a58f-41ce-bb0c-3c43c75bba36" +version = "1.6.1" + [[deps.Rmath]] deps = ["Random", "Rmath_jll"] git-tree-sha1 = "5b3d50eb374cea306873b371d3f8d3915a018f0b" @@ -2203,34 +2106,60 @@ version = "0.9.0" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8" +git-tree-sha1 = "6d40b2fe70437b01397d2a4d5b020008da4e7019" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.5.1+0" +version = "0.5.2+0" [[deps.Rocket]] deps = ["DataStructures", "Sockets", "Unrolled"] -git-tree-sha1 = "12c8d9bb85176acf23057b679a894ea59eb922c8" +git-tree-sha1 = "ad8f448adaaedd25803f12bcff8d59a8a1dd8bbb" uuid = "df971d30-c9d6-4b37-b8ff-e965b2cb3a40" -version = "1.9.0" +version = "1.11.0" weakdeps = ["Observables"] [deps.Rocket.extensions] RocketObservablesExt = "Observables" +[[deps.Roots]] +deps = ["Accessors", "CommonSolve", "Printf"] +git-tree-sha1 = "e6ffa7bd4f8d0b8744d18f219304738d952f9a37" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "3.0.11" + + [deps.Roots.extensions] + RootsChainRulesCoreExt = "ChainRulesCore" + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + RootsUnitfulExt = "Unitful" + + [deps.Roots.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.RxInfer]] -deps = ["Base64", "BayesBase", "DataStructures", "Dates", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "Optim", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SparseArrays", "Static", "Statistics", "TupleTools", "UUIDs"] -git-tree-sha1 = "4098a13ad0db656071d6e71ff085cbec69300412" +deps = ["AutoregressiveMessagePassingRules", "Base64", "BayesBase", "DataStructures", "Dates", "DeltaMessagePassingRules", "DiscreteTransitionMessagePassingRules", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GCVMessagePassingRules", "GaussianCouplingMessagePassingRules", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "PrecompileTools", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SoftDotMessagePassingRules", "SparseArrays", "StandardMessagePassingRules", "Static", "Statistics", "TupleTools", "UUIDs"] +git-tree-sha1 = "cbb0595f742056ccab20beba5cf2a1253294c6dd" uuid = "86711068-29c9-4ff7-b620-ae75d7495b3d" -version = "5.5.0" +version = "6.1.0" [deps.RxInfer.extensions] + OptimExt = "Optim" PrettyTablesExt = "PrettyTables" ProjectionExt = "ExponentialFamilyProjection" + ReactantExt = "Reactant" TensorBoardLoggerExt = "TensorBoardLogger" [deps.RxInfer.weakdeps] ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.SHA]] @@ -2238,9 +2167,10 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLPublic]] -git-tree-sha1 = "912a1a941afb2a232183a485d86a437a25f88520" +deps = ["PrecompileTools"] +git-tree-sha1 = "74685afb51732a464fbce79a72708f7c4203ceb7" uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" -version = "1.2.0" +version = "1.3.0" [[deps.ScopedValues]] deps = ["HashArrayMappedTries", "Logging"] @@ -2264,27 +2194,16 @@ version = "1.4.10" uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" version = "1.11.0" -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "c5391c6ace3bc430ca630251d02ea9687169ca68" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.2" - [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" version = "1.11.0" [[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +deps = ["Dates"] +git-tree-sha1 = "8238217340ad0aaabe11afe39c1098b5bc9f4c8e" uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "f305871d2f381d21527c770d4788c06c097c9bc1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.2.0" +version = "1.1.1" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -2296,6 +2215,12 @@ version = "0.9.6" uuid = "6462fe0b-24de-5631-8697-dd941f90decc" version = "1.11.0" +[[deps.SoftDotMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "8ccebfa9b93d9908178cc0e97c4f4a480708740d" +uuid = "fdfab25d-afbd-4817-865a-cd280c067f5e" +version = "1.0.0" + [[deps.SortingAlgorithms]] deps = ["DataStructures"] git-tree-sha1 = "13cd91cc9be159e3f4d95b857fa2aa383b53772a" @@ -2309,31 +2234,31 @@ version = "1.12.0" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "6547cbdd8ce32efba0d21c5a40fa96d1a3548f9f" +git-tree-sha1 = "429071b23f4c9a13fb6582f807cc2ef454082408" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.8.0" +version = "2.9.0" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" -[[deps.StableRNGs]] -deps = ["Random"] -git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" -uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" -version = "1.0.4" +[[deps.StandardMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "LogExpFunctions", "MatrixCorrectionTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "SpecialFunctions", "StatsFuns"] +git-tree-sha1 = "ca7e44b8d9c49483dfab3fc5e91346d032cb7d45" +uuid = "d166223a-7879-43b1-add3-64af0a178e9e" +version = "1.0.0" [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "cbc2fed5b692d12e199397471ba6c5988f69b629" +git-tree-sha1 = "474a5283ad435618090122872eea6a8165ea6bcf" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.4.1" +version = "1.4.6" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" +git-tree-sha1 = "8a8a52f887f38d44014e24ee46b8a7311c625f6d" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.18" +version = "1.9.24" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2347,9 +2272,9 @@ version = "1.4.4" [[deps.Statistics]] deps = ["LinearAlgebra"] -git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" +git-tree-sha1 = "e2b53ce13a53367e96601081e33d34746b571bad" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.11.1" +version = "1.11.5" weakdeps = ["SparseArrays"] [deps.Statistics.extensions] @@ -2363,24 +2288,21 @@ version = "1.8.0" [[deps.StatsBase]] deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "e4d7a1a0edc20af42689ea6f4f3587a2175d50ee" +git-tree-sha1 = "adb9da019510162e67a4493fc235c23203d8b09e" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.12" +version = "0.34.13" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" +git-tree-sha1 = "0aa97471d55945556e8d2859568b8317cef98351" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.5.2" +version = "1.5.3" +weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" - [deps.StatsFuns.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" - [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] git-tree-sha1 = "88cf3587711d9ad0a55722d339a013c4c56c5bbc" @@ -2388,23 +2310,27 @@ uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" version = "0.15.8" [[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "d05693d339e37d6ab134c5ab53c29fce5ee5d7d5" +deps = ["PrecompileTools", "StyledStrings"] +git-tree-sha1 = "9e3a02d73a8f0a9be04e677dbef758aab40f8bea" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.4.4" +version = "0.6.1" [[deps.StructUtils]] deps = ["Dates", "UUIDs"] -git-tree-sha1 = "82bee338d650aa515f31866c460cb7e3bcef90b8" +git-tree-sha1 = "ad435e30854ed0f50f4b7f67edd71664afecc5d8" uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" -version = "2.8.2" +version = "2.10.0" [deps.StructUtils.extensions] + StructUtilsDataFramesExt = ["DataFrames"] + StructUtilsLazilyInitializedFieldsExt = ["LazilyInitializedFields"] StructUtilsMeasurementsExt = ["Measurements"] StructUtilsStaticArraysCoreExt = ["StaticArraysCore"] StructUtilsTablesExt = ["Tables"] [deps.StructUtils.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazilyInitializedFields = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" @@ -2441,9 +2367,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" +git-tree-sha1 = "a94d9bdda1b7bed0046cea645639ab3f62196fac" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.12.1" +version = "1.14.0" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -2462,9 +2388,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" version = "1.11.0" [[deps.TinyHugeNumbers]] -git-tree-sha1 = "83c6abf376718345a85c071b249ef6692a8936d4" +git-tree-sha1 = "d5b24fd37550762d78280fb37c1800c3ea7e95cb" uuid = "783c9a47-75a3-44ac-a16b-f1ab7b3acf04" -version = "1.0.3" +version = "1.0.4" [[deps.TranscodingStreams]] git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" @@ -2476,33 +2402,16 @@ git-tree-sha1 = "311349fd1c93a31f783f977a71e8b062a57d4101" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.13" -[[deps.Tullio]] -deps = ["DiffRules", "LinearAlgebra", "Requires"] -git-tree-sha1 = "de0febfe1243e89f352abd4ca0e9de6c8e6190c5" -uuid = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc" -version = "0.3.9" - - [deps.Tullio.extensions] - TullioCUDAExt = "CUDA" - TullioChainRulesCoreExt = "ChainRulesCore" - TullioFillArraysExt = "FillArrays" - TullioTrackerExt = "Tracker" - - [deps.Tullio.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.TupleTools]] -git-tree-sha1 = "41e43b9dc950775eac654b9f845c839cd2f1821e" +git-tree-sha1 = "a1c7e924f746f0ebc792425e7d4d2ea5b4470697" uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" -version = "1.6.0" +version = "1.6.1" [[deps.URIs]] -git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" +deps = ["Serialization"] +git-tree-sha1 = "0392e5e3c5327b90a487b0ff3e818c4aecd3660b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.6.1" +version = "1.7.1" [[deps.UUIDs]] deps = ["Random", "SHA"] @@ -2550,9 +2459,9 @@ version = "1.4.3" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "e9aeb174f95385de31e70bd15fa066a505ea82b9" +git-tree-sha1 = "cab29ed70d9355a28b95b1798007ff3a00eefc91" uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.7" +version = "0.6.8" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] @@ -2567,9 +2476,9 @@ version = "1.6.1" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" +git-tree-sha1 = "e52eca002a11c30a858185efdfb15311e1c7a6bf" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.3+0" +version = "5.8.4+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2585,9 +2494,9 @@ version = "1.2.6+0" [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "808090ede1d41644447dd5cbafced4731c56bd2f" +git-tree-sha1 = "ce91b54a5f90c4f27df6950706234b34e49cf79e" uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.13+0" +version = "1.8.14+0" [[deps.Xorg_libXau_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2621,9 +2530,9 @@ version = "6.0.2+0" [[deps.Xorg_libXi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "a376af5c7ae60d29825164db40787f15c80c7c54" +git-tree-sha1 = "704274ca960c42049fd9bda089fc4be32af5cdca" uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.8.3+0" +version = "1.8.5+0" [[deps.Xorg_libXinerama_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll"] @@ -2639,9 +2548,9 @@ version = "1.5.6+0" [[deps.Xorg_libXrender_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "7ed9347888fac59a618302ee38216dd0379c480d" +git-tree-sha1 = "a54cf54677c9f6eac0d97e9d757c233b56bc21b9" uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.12+0" +version = "0.9.13+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2699,15 +2608,15 @@ version = "0.4.2+0" [[deps.Xorg_xkbcomp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "801a858fc9fb90c11ffddee1801bb06a738bda9b" +git-tree-sha1 = "9a5e6e8f1a7c40941465c04840145e527f0d6b4b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.7+0" +version = "1.5.0+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "ed349d26affcacafbc7fc2941ace1fb98f71e715" +git-tree-sha1 = "df77b22eb77051b3d0ef30aab979684f7482c66f" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.47.0+1" +version = "2.48.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2740,15 +2649,15 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" +git-tree-sha1 = "0343a4dc329ca4dd71bf5c5b3fc1a8c2f6e0692d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.3+0" +version = "3.15.2+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" +git-tree-sha1 = "cb007192783c56d8249db4cf0e3495001edfe414" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.17.4+0" +version = "0.17.5+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] @@ -2763,9 +2672,9 @@ version = "0.2.2+0" [[deps.libdrm_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libpciaccess_jll"] -git-tree-sha1 = "63aac0bcb0b582e11bad965cef4a689905456c03" +git-tree-sha1 = "28e57478e8a160d346a19c28b3fffb9273bcc9c2" uuid = "8e53e030-5e6c-5a89-a30b-be5b7263a166" -version = "2.4.125+1" +version = "2.4.134+0" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2787,15 +2696,15 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" +git-tree-sha1 = "1fcd6cf05d23adab0b5ffc496d020537215751dc" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.58+0" +version = "1.6.59+1" [[deps.libva_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll", "Xorg_libXfixes_jll", "libdrm_jll"] -git-tree-sha1 = "7dbf96baae3310fe2fa0df0ccbb3c6288d5816c9" +git-tree-sha1 = "21cbc8fc2ac0bb182ed461e556d9c062ae6a3164" uuid = "9a156e7d-b971-5f62-b2c9-67348b8fb97c" -version = "2.23.0+0" +version = "2.24.1+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] diff --git a/probprog/PP3 - variational Bayesian inference.jl b/probprog/PP3 - variational Bayesian inference.jl index 6cf9a5a2..62ec9f40 100644 --- a/probprog/PP3 - variational Bayesian inference.jl +++ b/probprog/PP3 - variational Bayesian inference.jl @@ -1,5 +1,5 @@ ### A Pluto.jl notebook ### -# v0.20.28 +# v1.0.3 using Markdown using InteractiveUtils @@ -592,12 +592,12 @@ StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" [compat] BmlipTeachingTools = "~1.4.1" ColorSchemes = "~3.31.0" -Distributions = "~0.25.127" +Distributions = "~0.25.132" JLD = "~0.13.5" LaTeXStrings = "~1.4.0" Optimisers = "~0.4.7" Plots = "~1.41.6" -RxInfer = "~5.5.0" +RxInfer = "~6.1.0" StatsPlots = "~0.15.8" """ @@ -605,24 +605,9 @@ StatsPlots = "~0.15.8" PLUTO_MANIFEST_TOML_CONTENTS = """ # This file is machine-generated - editing it directly is not advised -julia_version = "1.12.6" +julia_version = "1.12.7" manifest_format = "2.0" -project_hash = "d604b9aad441b8a64fab9b8cb1b561d439fc1748" - -[[deps.ADTypes]] -git-tree-sha1 = "d9aaef7c63466eee4de23b4d9dad03629df54bea" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.22.1" - - [deps.ADTypes.extensions] - ADTypesChainRulesCoreExt = "ChainRulesCore" - ADTypesConstructionBaseExt = "ConstructionBase" - ADTypesEnzymeCoreExt = "EnzymeCore" - - [deps.ADTypes.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" +project_hash = "9d4ff7bda7af025a0e75b21f1b58349ac9d48332" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -645,11 +630,35 @@ git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.5" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "7063ad1083578215c7c4bf410368150abe8d5524" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.45" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.Adapt]] deps = ["LinearAlgebra"] -git-tree-sha1 = "daa72978cd7a624246e894a4f4f067706d4e17e2" +git-tree-sha1 = "dee8388a9bec89c8713ad176f96960ae2f98598a" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.7.0" +version = "4.7.4" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -684,47 +693,11 @@ git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.2+0" -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "3d0cabd25fab32390e3bcb82cd67e700aebd9816" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.25.0" - - [deps.ArrayInterface.extensions] - ArrayInterfaceAMDGPUExt = "AMDGPU" - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] - ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" - ArrayInterfaceChainRulesExt = "ChainRules" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceMetalExt = "Metal" - ArrayInterfaceReverseDiffExt = "ReverseDiff" - ArrayInterfaceSparseArraysExt = "SparseArrays" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" - ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "e0b47732a192dd59b9d079a06d04235e2f833963" +git-tree-sha1 = "b4a2d2dfcaedf8f0cb93a970c4ccba6f632f14cc" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.12.2" +version = "1.15.1" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -734,6 +707,12 @@ weakdeps = ["SparseArrays"] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" version = "1.11.0" +[[deps.AutoregressiveMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "4c9f3f4edd4580e385535bce39a6a39f8f1a6aa9" +uuid = "bbb8872a-15f9-43f6-924d-37f12d04ed53" +version = "1.0.0" + [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" @@ -746,9 +725,9 @@ version = "1.11.0" [[deps.BayesBase]] deps = ["Distributions", "DomainSets", "LinearAlgebra", "Random", "SpecialFunctions", "StaticArrays", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "e644fb61dcc7b0df1be931230d2b9bc3a96d912f" +git-tree-sha1 = "cadec5ad37b53e1198f36524b30297fc0df98aae" uuid = "b4ee3484-f114-42fe-b91c-797d54a0c67e" -version = "1.5.9" +version = "1.5.12" weakdeps = ["FastCholesky"] [deps.BayesBase.extensions] @@ -767,9 +746,9 @@ version = "1.1.5" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "0f606a9894e2bcda541ceb82a91a13c5d450ed97" +git-tree-sha1 = "876d4c4b941cc8b079da79c88d9c2dee52b9dd13" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "1.9.3" +version = "1.10.3" [deps.BlockArrays.extensions] BlockArraysAdaptExt = "Adapt" @@ -820,15 +799,15 @@ weakdeps = ["SparseArrays"] ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChunkCodecCore]] -git-tree-sha1 = "1a3ad7e16a321667698a19e77362b35a1e94c544" +git-tree-sha1 = "3496e2b359c27793d12bec54ec94be7983a6ceb2" uuid = "0b6fb165-00bc-4d37-ab8b-79f91016dbe1" -version = "1.0.1" +version = "1.0.2" [[deps.ChunkCodecLibZlib]] deps = ["ChunkCodecCore", "Zlib_jll"] -git-tree-sha1 = "cee8104904c53d39eb94fd06cbe60cb5acde7177" +git-tree-sha1 = "d4101e848e8d3f585d61d244c2fe0c80a70e6b3b" uuid = "4c0bbee4-addc-4d73-81a0-b6caacae83c8" -version = "1.0.0" +version = "1.1.0" [[deps.ChunkCodecLibZstd]] deps = ["ChunkCodecCore", "Zstd_jll"] @@ -844,9 +823,9 @@ version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" +git-tree-sha1 = "970758a3d591a2a5c2a907c53f2e2f8c1b1d3537" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.8" +version = "0.7.9" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -885,6 +864,12 @@ git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" version = "1.1.0" +[[deps.CommonSolve]] +deps = ["PrecompileTools"] +git-tree-sha1 = "6c389fa857f6ca5a95474b52a52023fd77f24cb7" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.14" + [[deps.CommonSubexpressions]] deps = ["MacroTools"] git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" @@ -892,9 +877,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" [[deps.CommonWorldInvalidations]] -git-tree-sha1 = "f1697a56da59e8a2cefcbbfe71c13354a6f18c61" +deps = ["PrecompileTools"] +git-tree-sha1 = "7c4ea0adfb7238bf4678aa36325863fab6163f6f" uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" -version = "1.1.0" +version = "1.2.2" [[deps.Compat]] deps = ["TOML", "UUIDs"] @@ -909,18 +895,27 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.3.0+1" +version = "1.3.1+2" [[deps.CompositeTypes]] git-tree-sha1 = "bce26c3dab336582805503bed209faab1c279768" uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657" version = "0.1.4" +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" +git-tree-sha1 = "d5e5fa1f0d6ca517edbbcd734efa93c6639405b0" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.5.1" +version = "2.7.1" [[deps.ConstructionBase]] git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" @@ -945,9 +940,9 @@ version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "6fb53a69613a0b2b68a0d12671717d307ab8b24e" +git-tree-sha1 = "b0bc6d2cad1fed8b7fd59a1551a991cb3d2809e6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.5" +version = "0.19.6" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -971,6 +966,18 @@ git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" +[[deps.DeltaMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase"] +git-tree-sha1 = "eb4eafdd796377c6dfc1e842363291c5db8525c6" +uuid = "ea5de7a7-24c9-4a61-90ce-ef77c844b13f" +version = "1.0.0" + + [deps.DeltaMessagePassingRules.extensions] + DeltaMessagePassingRulesProjectionExt = "ExponentialFamilyProjection" + + [deps.DeltaMessagePassingRules.weakdeps] + ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + [[deps.Dictionaries]] deps = ["Indexing", "Random", "Serialization"] git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" @@ -989,58 +996,11 @@ git-tree-sha1 = "79a2aca180a85c690c58a020d47b426954b590f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.16.0" -[[deps.DifferentiationInterface]] -deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "2147a95a217cc8a78ec96ee03581adf129468e49" -uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.18" - - [deps.DifferentiationInterface.extensions] - DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" - DifferentiationInterfaceDiffractorExt = "Diffractor" - DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] - DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" - DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" - DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" - DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] - DifferentiationInterfaceGTPSAExt = "GTPSA" - DifferentiationInterfaceHyperHessiansExt = "HyperHessians" - DifferentiationInterfaceMooncakeExt = "Mooncake" - DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] - DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] - DifferentiationInterfaceSparseArraysExt = "SparseArrays" - DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" - DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" - DifferentiationInterfaceStaticArraysExt = "StaticArrays" - DifferentiationInterfaceSymbolicsExt = "Symbolics" - DifferentiationInterfaceTrackerExt = "Tracker" - DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] - - [deps.DifferentiationInterface.weakdeps] - Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" - Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" - FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" - HyperHessians = "06b494a0-c8e0-40cc-ad32-d99506a00a6c" - Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" - SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.DiscreteTransitionMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase"] +git-tree-sha1 = "1bf03a659aa103303f73a2ef40d74c206b02305a" +uuid = "039b7295-e235-4523-a933-c224bd9a7e58" +version = "1.0.0" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] @@ -1059,10 +1019,10 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" version = "1.11.0" [[deps.Distributions]] -deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "3c8a0a9a6d4a10bdfb6b751bd2b6051ed3e25fd4" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "Roots", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2ddbc341251ed713d39e503b504593a5d6789551" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.127" +version = "0.25.132" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -1081,36 +1041,27 @@ git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" -[[deps.DomainIntegrals]] -deps = ["CompositeTypes", "DomainSets", "FastGaussQuadrature", "FunctionMaps", "GaussQuadrature", "HCubature", "IntervalSets", "LinearAlgebra", "QuadGK", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "e90efe58cabfd58984ba5ba8edaf440251233384" -uuid = "cc6bae93-f070-4015-88fd-838f9505a86c" -version = "0.5.4" - [[deps.DomainSets]] deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "4599e0cd684f3ff6cbbab73c77553a3d01a8d74d" +git-tree-sha1 = "6ac879a64381881dc24f96a15e13e80204439906" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.18" +version = "0.8.3" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" DomainSetsRandomExt = "Random" + DomainSetsRecipesBaseExt = "RecipesBase" [deps.DomainSets.weakdeps] Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.7.0" -[[deps.EnumX]] -git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.7" - [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "8a4be429317c42cfae6a7fc03c31bad1970c310d" @@ -1119,9 +1070,9 @@ version = "0.0.20230411+1" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "d36f682e590a83d63d1c7dbd287573764682d12a" +git-tree-sha1 = "4e468f521e1f9f86891cb07186de5df90360a666" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.11" +version = "0.1.12" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1131,9 +1082,9 @@ version = "2.8.1+0" [[deps.ExponentialFamily]] deps = ["BayesBase", "BlockArrays", "Distributions", "DomainSets", "FastCholesky", "FillArrays", "ForwardDiff", "HCubature", "HypergeometricFunctions", "IntervalSets", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "PositiveFactorizations", "Random", "SparseArrays", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "a6b9907170f8e7958e01ff0d31b6838022f4db2f" +git-tree-sha1 = "22a03af5898b5f988efdd835f40af831164f7d4b" uuid = "62312e5e-252a-4322-ace9-a5f4bf9b357b" -version = "2.5.0" +version = "2.7.1" [[deps.FFMPEG]] deps = ["FFMPEG_jll"] @@ -1155,14 +1106,18 @@ version = "0.3.1" [[deps.FastCholesky]] deps = ["LinearAlgebra", "PositiveFactorizations"] -git-tree-sha1 = "1c0a81e006e40e9fcbd5f6f6cb42ac2700f86889" +git-tree-sha1 = "02f0dc1afe2c0bb73a0881727a4bf771a19ec190" uuid = "2d5283b6-8564-42b6-bb00-83ed8e915756" -version = "1.4.3" -weakdeps = ["StaticArraysCore"] +version = "1.5.0" [deps.FastCholesky.extensions] + ReactantExt = "Reactant" StaticArraysCoreExt = "StaticArraysCore" + [deps.FastCholesky.weakdeps] + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] git-tree-sha1 = "4916117dd032ec5959b7633aedbbac408ca5ddeb" @@ -1171,9 +1126,9 @@ version = "1.3.0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "8e9c059d6857607253e837730dbf780b6b151acd" +git-tree-sha1 = "6621fef488e496356c9c9625d0562c12a6070819" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.19.0" +version = "1.20.0" weakdeps = ["HTTP"] [deps.FileIO.extensions] @@ -1185,9 +1140,9 @@ version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "2f979084d1e13948a3352cf64a25df6bd3b4dca3" +git-tree-sha1 = "417289ac840d201005d9ed16789a46defccbe36d" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.16.0" +version = "1.18.1" weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [deps.FillArrays.extensions] @@ -1196,30 +1151,6 @@ weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] FillArraysStaticArraysExt = "StaticArrays" FillArraysStatisticsExt = "Statistics" -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "2e5742cda07276e1834281ada4cc71b6bfc87586" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.31.1" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" - FiniteDiffSparseArraysExt = "SparseArrays" - FiniteDiffStaticArraysExt = "StaticArrays" - - [deps.FiniteDiff.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - -[[deps.FixedArguments]] -deps = ["TupleTools"] -git-tree-sha1 = "befa1ad59c77643dec6fc20d71fd6f5c3afcdadd" -uuid = "4130a065-6d82-41fe-881e-7a5c65156f7d" -version = "0.1.1" - [[deps.FixedPointNumbers]] deps = ["Random", "Statistics"] git-tree-sha1 = "59af96b98217c6ef4ae0dfe065ac7c20831d1a84" @@ -1239,9 +1170,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "2c5d0b0e12088cde2cf84afb2784415b1ea3dfee" +git-tree-sha1 = "3b0f72e2ffef1a139ac450725c9ecd01c0a3c050" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.4.1" +version = "1.4.6" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -1271,10 +1202,11 @@ git-tree-sha1 = "60a0339f28a233601cb74468032b5c302d5067de" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" version = "0.5.2" -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" -version = "1.11.0" +[[deps.GCVMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "StandardMessagePassingRules", "StatsFuns"] +git-tree-sha1 = "b9d896eff3b7dd887b119675f96d210abc31f2a9" +uuid = "2bb838d1-ae36-49a2-8c64-82a0acccfa93" +version = "1.0.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] @@ -1300,11 +1232,16 @@ git-tree-sha1 = "6fada551286ab6ea4ca1628cb2de9f166a2ec966" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" version = "0.73.26+0" -[[deps.GaussQuadrature]] -deps = ["SpecialFunctions"] -git-tree-sha1 = "eb6f1f48aa994f3018cbd029a17863c6535a266d" -uuid = "d54b0c1a-921d-58e0-8e36-89d8069c0969" -version = "0.5.8" +[[deps.Gamma]] +git-tree-sha1 = "86f86b6168a016ed88e4ae4e64577b98c3b59e8e" +uuid = "a0844989-3bd2-4988-8bea-c9407ab0941b" +version = "1.1.0" + +[[deps.GaussianCouplingMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesBase"] +git-tree-sha1 = "73948ad868fa022db11c678aaf1415ddb762f219" +uuid = "a57ce80c-d854-4eb3-973d-f0d0550df039" +version = "1.0.0" [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] @@ -1326,9 +1263,9 @@ version = "2.86.3+0" [[deps.GraphPPL]] deps = ["BitSetTuples", "DataStructures", "Dictionaries", "MacroTools", "MetaGraphsNext", "NamedTupleTools", "Static", "StaticArrays", "TupleTools", "Unrolled"] -git-tree-sha1 = "ea4b12cf4e8b76e4c075898724b37915808cace1" +git-tree-sha1 = "2d10297851848d1b6dc1dc335e549068e7890477" uuid = "b3f8163a-e979-4e85-b43e-1f63d8c8b42c" -version = "4.8.0" +version = "4.9.0" [deps.GraphPPL.extensions] GraphPPLDistributionsExt = "Distributions" @@ -1349,9 +1286,9 @@ version = "1.3.16+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "DataStructures", "Inflate", "LinearAlgebra", "Random", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "7eb45fe833a5b7c51cf6d89c5a841d5967e44be3" +git-tree-sha1 = "dbb2b976f605b220dfe139d6db9f3859680da09e" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.14.0" +version = "1.15.0" weakdeps = ["Distributed", "SharedArrays"] [deps.Graphs.extensions] @@ -1416,10 +1353,10 @@ uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" version = "2.14.0+0" [[deps.HypergeometricFunctions]] -deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" +deps = ["Gamma", "LinearAlgebra"] +git-tree-sha1 = "31bb6c92405c084617facc1d7ed9eb6c402d061e" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.28" +version = "0.3.30" [[deps.Hyperscript]] deps = ["Test"] @@ -1479,20 +1416,36 @@ version = "0.16.3" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.IntervalSets]] -git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" +git-tree-sha1 = "0db6aea5b64caa1c47e9fdd27394f0296f05e8bf" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.14" -weakdeps = ["Random", "RecipesBase", "Statistics"] +version = "0.7.15" [deps.IntervalSets.extensions] + IntervalSetsMakieExt = "Makie" IntervalSetsRandomExt = "Random" IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" + [deps.IntervalSets.weakdeps] + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + +[[deps.InverseFunctions]] +git-tree-sha1 = "5cc6ad3e2bfc75a11eed92632ee341d37f4a4536" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.18" +weakdeps = ["Dates", "Test"] + + [deps.InverseFunctions.extensions] + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" + [[deps.IrrationalConstants]] -git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" +git-tree-sha1 = "d22e8bdb3f03c300a103ff23c0dd5a654c6701de" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.6" +version = "0.2.7" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -1506,10 +1459,10 @@ uuid = "4138dd39-2aa7-5051-a626-17a0bb65d9c8" version = "0.13.5" [[deps.JLD2]] -deps = ["ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] -git-tree-sha1 = "941f87a0ae1b14d1ac2fa57245425b23a9d7a516" +deps = ["ChunkCodecCore", "ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] +git-tree-sha1 = "9ce2e7c49ae4a7035b7d60db3a553b1f6c16875d" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.6.4" +version = "0.6.7" [deps.JLD2.extensions] UnPackExt = "UnPack" @@ -1531,9 +1484,9 @@ version = "1.8.0" [[deps.JSON]] deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] -git-tree-sha1 = "c89d196f5ffb64bfbf80985b699ea913b0d2c211" +git-tree-sha1 = "9939eb6f799a963b3392ac4a1d49d3fc0646eb80" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "1.6.1" +version = "1.11.0" [deps.JSON.extensions] JSONArrowExt = ["ArrowTypes"] @@ -1599,24 +1552,6 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "405e938379dbbdb24c0d93bd5b9600ecce03d11c" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.9.10" - - [deps.LazyArrays.extensions] - LazyArraysBandedMatricesExt = "BandedMatrices" - LazyArraysBlockArraysExt = "BlockArrays" - LazyArraysBlockBandedMatricesExt = "BlockBandedMatrices" - LazyArraysStaticArraysExt = "StaticArrays" - - [deps.LazyArrays.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -1687,12 +1622,6 @@ git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" version = "2.42.0+0" -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] -git-tree-sha1 = "cef1ba655e8c1f65af9d96c4fffe18bf1a3a3291" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.7.1" - [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" @@ -1792,6 +1721,18 @@ git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" version = "0.3.3" +[[deps.MessagePassingRulesApproximations]] +deps = ["Compat", "FastCholesky", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra"] +git-tree-sha1 = "0904181cd2a25ed85da53a3426af17f0fb7bb193" +uuid = "36043009-14b3-4068-9fb9-f1e492c92d7d" +version = "1.0.0" + +[[deps.MessagePassingRulesBase]] +deps = ["BayesBase", "Compat", "FastCholesky", "IrrationalConstants", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "386ffd59dc3b21d3d36542c41f7b0326c821813f" +uuid = "4a5b64c7-30c9-4471-82f2-bbe8464b157d" +version = "1.1.2" + [[deps.MetaGraphsNext]] deps = ["Graphs", "JLD2", "SimpleTraits"] git-tree-sha1 = "1983a06112db00c54e171f5cff8788c8efbdae85" @@ -1830,17 +1771,11 @@ git-tree-sha1 = "7c3ff68a904d0f7404e5d2f7f5bc667934d8d616" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" version = "0.10.4" -[[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "FiniteDiff", "LinearAlgebra"] -git-tree-sha1 = "b3f76b463c7998473062992b246045e6961a074e" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "8.0.0" - [[deps.NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "dbd2e8cd2c1c27f0b584f6661b4309609c5a685e" +git-tree-sha1 = "676c0f1c1c34224d6869675047a54b42fdc7b8c5" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.1.4" +version = "1.1.5" [[deps.NamedTupleTools]] git-tree-sha1 = "90914795fc59df44120fe3fff6742bb0d7adb1d0" @@ -1895,14 +1830,14 @@ version = "5.0.11+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "1d1aaa7d449b58415f97d2839c318b70ffb525a0" +git-tree-sha1 = "5caab1056e0734b87f62ae3a3b520d47d3e994e8" uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.6.1" +version = "1.7.0" [[deps.OpenSSL_jll]] deps = ["Artifacts", "Libdl"] uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.4+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1910,18 +1845,6 @@ git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.6+0" -[[deps.Optim]] -deps = ["ADTypes", "EnumX", "FillArrays", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "PositiveFactorizations", "Printf", "SparseArrays", "Statistics"] -git-tree-sha1 = "6fe140aab6c042a73c9d5dc280b87b32eee44f9f" -uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "2.2.1" - - [deps.Optim.extensions] - OptimMOIExt = "MathOptInterface" - - [deps.Optim.weakdeps] - MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" - [[deps.Optimisers]] deps = ["ChainRulesCore", "ConstructionBase", "Functors", "LinearAlgebra", "Random", "Statistics"] git-tree-sha1 = "36b5d2b9dd06290cd65fcf5bdbc3a551ed133af5" @@ -1956,9 +1879,9 @@ version = "10.44.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a680e58292816791211582a4d8e44353835e991f" +git-tree-sha1 = "123266c25174ef6c8d4718920abc206452cf8de6" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.38" +version = "0.11.41" weakdeps = ["StatsBase"] [deps.PDMats.extensions] @@ -1971,10 +1894,10 @@ uuid = "36c8627f-9965-5494-a995-c6b170f724f3" version = "1.57.1+0" [[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "32a4e09c5f29402573d673901778a0e03b0807b9" +deps = ["Dates", "PrecompileTools"] +git-tree-sha1 = "663e8b48b789916221e0765393b289ca6c88f24e" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.6" +version = "3.0.0" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -2035,12 +1958,6 @@ git-tree-sha1 = "e189d0623e7ce9c37389bac17e80aac3b0302e75" uuid = "7f904dfe-b85e-4ff6-b463-dae2292396a8" version = "0.7.83" -[[deps.PolyaGammaHybridSamplers]] -deps = ["Distributions", "Random", "SpecialFunctions", "StatsFuns"] -git-tree-sha1 = "9f6139650ff57f9d8528cd809ebc604c7e9738b1" -uuid = "c636ee4f-4591-4d8c-9fae-2dea21daa433" -version = "1.2.6" - [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" @@ -2055,9 +1972,9 @@ version = "1.3.4" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "8b770b60760d4451834fe79dd483e318eee709c4" +git-tree-sha1 = "aef1987d90dcc2e2cbd919ad10b2d25bcce4f418" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.5.2" +version = "1.6.1" [[deps.Primes]] deps = ["IntegerMathUtils"] @@ -2071,10 +1988,18 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" version = "1.11.0" [[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "fbb92c6c56b34e1a2c4c36058f68f332bec840e7" +deps = ["Printf"] +git-tree-sha1 = "ce5ba3edfdeba107a721748d53b5f5887f415853" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.11.0" +version = "1.13.0" + + [deps.ProgressMeter.extensions] + ProgressMeterDistributedExt = "Distributed" + ProgressMeterIJuliaExt = "IJulia" + + [deps.ProgressMeter.weakdeps] + Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" @@ -2144,18 +2069,16 @@ weakdeps = ["FixedPointNumbers"] RatiosFixedPointNumbersExt = "FixedPointNumbers" [[deps.ReactiveMP]] -deps = ["BayesBase", "DiffResults", "Distributions", "DomainIntegrals", "DomainSets", "ExponentialFamily", "FastCholesky", "FastGaussQuadrature", "FixedArguments", "ForwardDiff", "HCubature", "LazyArrays", "LinearAlgebra", "MacroTools", "MatrixCorrectionTools", "Optim", "PolyaGammaHybridSamplers", "PositiveFactorizations", "Random", "Rocket", "SpecialFunctions", "StatsBase", "StatsFuns", "TinyHugeNumbers", "Tullio", "TupleTools", "UUIDs"] -git-tree-sha1 = "e495df252e8564d65b215a2005684fe3a0deda93" +deps = ["BayesBase", "Compat", "Distributions", "LinearAlgebra", "MacroTools", "MessagePassingRulesBase", "Random", "Rocket", "TinyHugeNumbers", "TupleTools", "UUIDs"] +git-tree-sha1 = "944722ce6bfb8b1cdfb05a123afe9fe397fbd725" uuid = "a194aa59-28ba-4574-a09c-4a745416d6e3" -version = "6.3.0" +version = "7.0.0" [deps.ReactiveMP.extensions] - ReactiveMPOptimisersExt = "Optimisers" - ReactiveMPProjectionExt = "ExponentialFamilyProjection" + ReactiveMPReactantExt = "Reactant" [deps.ReactiveMP.weakdeps] - ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" - Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" [[deps.RecipesBase]] deps = ["PrecompileTools"] @@ -2194,34 +2117,60 @@ version = "0.9.0" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8" +git-tree-sha1 = "6d40b2fe70437b01397d2a4d5b020008da4e7019" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.5.1+0" +version = "0.5.2+0" [[deps.Rocket]] deps = ["DataStructures", "Sockets", "Unrolled"] -git-tree-sha1 = "12c8d9bb85176acf23057b679a894ea59eb922c8" +git-tree-sha1 = "ad8f448adaaedd25803f12bcff8d59a8a1dd8bbb" uuid = "df971d30-c9d6-4b37-b8ff-e965b2cb3a40" -version = "1.9.0" +version = "1.11.0" weakdeps = ["Observables"] [deps.Rocket.extensions] RocketObservablesExt = "Observables" +[[deps.Roots]] +deps = ["Accessors", "CommonSolve", "Printf"] +git-tree-sha1 = "e6ffa7bd4f8d0b8744d18f219304738d952f9a37" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "3.0.11" + + [deps.Roots.extensions] + RootsChainRulesCoreExt = "ChainRulesCore" + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + RootsUnitfulExt = "Unitful" + + [deps.Roots.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.RxInfer]] -deps = ["Base64", "BayesBase", "DataStructures", "Dates", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "Optim", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SparseArrays", "Static", "Statistics", "TupleTools", "UUIDs"] -git-tree-sha1 = "4098a13ad0db656071d6e71ff085cbec69300412" +deps = ["AutoregressiveMessagePassingRules", "Base64", "BayesBase", "DataStructures", "Dates", "DeltaMessagePassingRules", "DiscreteTransitionMessagePassingRules", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GCVMessagePassingRules", "GaussianCouplingMessagePassingRules", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "PrecompileTools", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SoftDotMessagePassingRules", "SparseArrays", "StandardMessagePassingRules", "Static", "Statistics", "TupleTools", "UUIDs"] +git-tree-sha1 = "cbb0595f742056ccab20beba5cf2a1253294c6dd" uuid = "86711068-29c9-4ff7-b620-ae75d7495b3d" -version = "5.5.0" +version = "6.1.0" [deps.RxInfer.extensions] + OptimExt = "Optim" PrettyTablesExt = "PrettyTables" ProjectionExt = "ExponentialFamilyProjection" + ReactantExt = "Reactant" TensorBoardLoggerExt = "TensorBoardLogger" [deps.RxInfer.weakdeps] ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.SHA]] @@ -2229,9 +2178,10 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLPublic]] -git-tree-sha1 = "912a1a941afb2a232183a485d86a437a25f88520" +deps = ["PrecompileTools"] +git-tree-sha1 = "74685afb51732a464fbce79a72708f7c4203ceb7" uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" -version = "1.2.0" +version = "1.3.0" [[deps.ScopedValues]] deps = ["HashArrayMappedTries", "Logging"] @@ -2255,12 +2205,6 @@ version = "1.4.10" uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" version = "1.11.0" -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "c5391c6ace3bc430ca630251d02ea9687169ca68" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.2" - [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" @@ -2287,6 +2231,12 @@ version = "0.9.6" uuid = "6462fe0b-24de-5631-8697-dd941f90decc" version = "1.11.0" +[[deps.SoftDotMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "8ccebfa9b93d9908178cc0e97c4f4a480708740d" +uuid = "fdfab25d-afbd-4817-865a-cd280c067f5e" +version = "1.0.0" + [[deps.SortingAlgorithms]] deps = ["DataStructures"] git-tree-sha1 = "13cd91cc9be159e3f4d95b857fa2aa383b53772a" @@ -2300,9 +2250,9 @@ version = "1.12.0" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "6547cbdd8ce32efba0d21c5a40fa96d1a3548f9f" +git-tree-sha1 = "429071b23f4c9a13fb6582f807cc2ef454082408" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.8.0" +version = "2.9.0" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2314,17 +2264,23 @@ git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" +[[deps.StandardMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "LogExpFunctions", "MatrixCorrectionTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "SpecialFunctions", "StatsFuns"] +git-tree-sha1 = "ca7e44b8d9c49483dfab3fc5e91346d032cb7d45" +uuid = "d166223a-7879-43b1-add3-64af0a178e9e" +version = "1.0.0" + [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "cbc2fed5b692d12e199397471ba6c5988f69b629" +git-tree-sha1 = "474a5283ad435618090122872eea6a8165ea6bcf" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.4.1" +version = "1.4.6" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" +git-tree-sha1 = "8a8a52f887f38d44014e24ee46b8a7311c625f6d" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.18" +version = "1.9.24" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2338,9 +2294,9 @@ version = "1.4.4" [[deps.Statistics]] deps = ["LinearAlgebra"] -git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" +git-tree-sha1 = "e2b53ce13a53367e96601081e33d34746b571bad" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.11.1" +version = "1.11.5" weakdeps = ["SparseArrays"] [deps.Statistics.extensions] @@ -2354,24 +2310,21 @@ version = "1.8.0" [[deps.StatsBase]] deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "e4d7a1a0edc20af42689ea6f4f3587a2175d50ee" +git-tree-sha1 = "adb9da019510162e67a4493fc235c23203d8b09e" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.12" +version = "0.34.13" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" +git-tree-sha1 = "0aa97471d55945556e8d2859568b8317cef98351" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.5.2" +version = "1.5.3" +weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" - [deps.StatsFuns.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" - [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] git-tree-sha1 = "88cf3587711d9ad0a55722d339a013c4c56c5bbc" @@ -2380,16 +2333,20 @@ version = "0.15.8" [[deps.StructUtils]] deps = ["Dates", "UUIDs"] -git-tree-sha1 = "82bee338d650aa515f31866c460cb7e3bcef90b8" +git-tree-sha1 = "ad435e30854ed0f50f4b7f67edd71664afecc5d8" uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" -version = "2.8.2" +version = "2.10.0" [deps.StructUtils.extensions] + StructUtilsDataFramesExt = ["DataFrames"] + StructUtilsLazilyInitializedFieldsExt = ["LazilyInitializedFields"] StructUtilsMeasurementsExt = ["Measurements"] StructUtilsStaticArraysCoreExt = ["StaticArraysCore"] StructUtilsTablesExt = ["Tables"] [deps.StructUtils.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazilyInitializedFields = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" @@ -2447,9 +2404,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" version = "1.11.0" [[deps.TinyHugeNumbers]] -git-tree-sha1 = "83c6abf376718345a85c071b249ef6692a8936d4" +git-tree-sha1 = "d5b24fd37550762d78280fb37c1800c3ea7e95cb" uuid = "783c9a47-75a3-44ac-a16b-f1ab7b3acf04" -version = "1.0.3" +version = "1.0.4" [[deps.TranscodingStreams]] git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" @@ -2461,33 +2418,16 @@ git-tree-sha1 = "311349fd1c93a31f783f977a71e8b062a57d4101" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.13" -[[deps.Tullio]] -deps = ["DiffRules", "LinearAlgebra", "Requires"] -git-tree-sha1 = "de0febfe1243e89f352abd4ca0e9de6c8e6190c5" -uuid = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc" -version = "0.3.9" - - [deps.Tullio.extensions] - TullioCUDAExt = "CUDA" - TullioChainRulesCoreExt = "ChainRulesCore" - TullioFillArraysExt = "FillArrays" - TullioTrackerExt = "Tracker" - - [deps.Tullio.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.TupleTools]] -git-tree-sha1 = "41e43b9dc950775eac654b9f845c839cd2f1821e" +git-tree-sha1 = "a1c7e924f746f0ebc792425e7d4d2ea5b4470697" uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" -version = "1.6.0" +version = "1.6.1" [[deps.URIs]] -git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" +deps = ["Serialization"] +git-tree-sha1 = "0392e5e3c5327b90a487b0ff3e818c4aecd3660b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.6.1" +version = "1.7.1" [[deps.UUIDs]] deps = ["Random", "SHA"] diff --git a/probprog/PP4 - Bayesian filtering and smoothing.jl b/probprog/PP4 - Bayesian filtering and smoothing.jl index 60d00144..14a41358 100644 --- a/probprog/PP4 - Bayesian filtering and smoothing.jl +++ b/probprog/PP4 - Bayesian filtering and smoothing.jl @@ -1,5 +1,5 @@ ### A Pluto.jl notebook ### -# v0.20.28 +# v1.0.3 using Markdown using InteractiveUtils @@ -498,11 +498,11 @@ StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" [compat] BmlipTeachingTools = "~1.4.1" ColorSchemes = "~3.31.0" -Distributions = "~0.25.127" +Distributions = "~0.25.132" JLD = "~0.13.5" LaTeXStrings = "~1.4.0" Plots = "~1.41.6" -RxInfer = "~5.5.0" +RxInfer = "~6.1.0" StatsPlots = "~0.15.8" """ @@ -510,24 +510,9 @@ StatsPlots = "~0.15.8" PLUTO_MANIFEST_TOML_CONTENTS = """ # This file is machine-generated - editing it directly is not advised -julia_version = "1.12.6" +julia_version = "1.12.7" manifest_format = "2.0" -project_hash = "da8a8fc49268a4922bde35baef1f5a56fcfa4235" - -[[deps.ADTypes]] -git-tree-sha1 = "d9aaef7c63466eee4de23b4d9dad03629df54bea" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.22.1" - - [deps.ADTypes.extensions] - ADTypesChainRulesCoreExt = "ChainRulesCore" - ADTypesConstructionBaseExt = "ConstructionBase" - ADTypesEnzymeCoreExt = "EnzymeCore" - - [deps.ADTypes.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" +project_hash = "41ca56a4bbc7e52ef3c13bd5810fd358911f6986" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -550,11 +535,35 @@ git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.5" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "7063ad1083578215c7c4bf410368150abe8d5524" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.45" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.Adapt]] deps = ["LinearAlgebra"] -git-tree-sha1 = "daa72978cd7a624246e894a4f4f067706d4e17e2" +git-tree-sha1 = "dee8388a9bec89c8713ad176f96960ae2f98598a" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.7.0" +version = "4.7.4" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -589,47 +598,11 @@ git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.2+0" -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "3d0cabd25fab32390e3bcb82cd67e700aebd9816" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.25.0" - - [deps.ArrayInterface.extensions] - ArrayInterfaceAMDGPUExt = "AMDGPU" - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] - ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" - ArrayInterfaceChainRulesExt = "ChainRules" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceMetalExt = "Metal" - ArrayInterfaceReverseDiffExt = "ReverseDiff" - ArrayInterfaceSparseArraysExt = "SparseArrays" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" - ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "e0b47732a192dd59b9d079a06d04235e2f833963" +git-tree-sha1 = "b4a2d2dfcaedf8f0cb93a970c4ccba6f632f14cc" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.12.2" +version = "1.15.1" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -639,6 +612,12 @@ weakdeps = ["SparseArrays"] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" version = "1.11.0" +[[deps.AutoregressiveMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "4c9f3f4edd4580e385535bce39a6a39f8f1a6aa9" +uuid = "bbb8872a-15f9-43f6-924d-37f12d04ed53" +version = "1.0.0" + [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" @@ -651,9 +630,9 @@ version = "1.11.0" [[deps.BayesBase]] deps = ["Distributions", "DomainSets", "LinearAlgebra", "Random", "SpecialFunctions", "StaticArrays", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "e644fb61dcc7b0df1be931230d2b9bc3a96d912f" +git-tree-sha1 = "cadec5ad37b53e1198f36524b30297fc0df98aae" uuid = "b4ee3484-f114-42fe-b91c-797d54a0c67e" -version = "1.5.9" +version = "1.5.12" weakdeps = ["FastCholesky"] [deps.BayesBase.extensions] @@ -672,9 +651,9 @@ version = "1.1.5" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "0f606a9894e2bcda541ceb82a91a13c5d450ed97" +git-tree-sha1 = "876d4c4b941cc8b079da79c88d9c2dee52b9dd13" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "1.9.3" +version = "1.10.3" [deps.BlockArrays.extensions] BlockArraysAdaptExt = "Adapt" @@ -725,15 +704,15 @@ weakdeps = ["SparseArrays"] ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChunkCodecCore]] -git-tree-sha1 = "1a3ad7e16a321667698a19e77362b35a1e94c544" +git-tree-sha1 = "3496e2b359c27793d12bec54ec94be7983a6ceb2" uuid = "0b6fb165-00bc-4d37-ab8b-79f91016dbe1" -version = "1.0.1" +version = "1.0.2" [[deps.ChunkCodecLibZlib]] deps = ["ChunkCodecCore", "Zlib_jll"] -git-tree-sha1 = "cee8104904c53d39eb94fd06cbe60cb5acde7177" +git-tree-sha1 = "d4101e848e8d3f585d61d244c2fe0c80a70e6b3b" uuid = "4c0bbee4-addc-4d73-81a0-b6caacae83c8" -version = "1.0.0" +version = "1.1.0" [[deps.ChunkCodecLibZstd]] deps = ["ChunkCodecCore", "Zstd_jll"] @@ -749,9 +728,9 @@ version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" +git-tree-sha1 = "970758a3d591a2a5c2a907c53f2e2f8c1b1d3537" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.8" +version = "0.7.9" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -790,6 +769,12 @@ git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" version = "1.1.0" +[[deps.CommonSolve]] +deps = ["PrecompileTools"] +git-tree-sha1 = "6c389fa857f6ca5a95474b52a52023fd77f24cb7" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.14" + [[deps.CommonSubexpressions]] deps = ["MacroTools"] git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" @@ -797,9 +782,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" [[deps.CommonWorldInvalidations]] -git-tree-sha1 = "f1697a56da59e8a2cefcbbfe71c13354a6f18c61" +deps = ["PrecompileTools"] +git-tree-sha1 = "7c4ea0adfb7238bf4678aa36325863fab6163f6f" uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" -version = "1.1.0" +version = "1.2.2" [[deps.Compat]] deps = ["TOML", "UUIDs"] @@ -814,18 +800,27 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.3.0+1" +version = "1.3.1+2" [[deps.CompositeTypes]] git-tree-sha1 = "bce26c3dab336582805503bed209faab1c279768" uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657" version = "0.1.4" +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" +git-tree-sha1 = "d5e5fa1f0d6ca517edbbcd734efa93c6639405b0" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.5.1" +version = "2.7.1" [[deps.ConstructionBase]] git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" @@ -850,9 +845,9 @@ version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "6fb53a69613a0b2b68a0d12671717d307ab8b24e" +git-tree-sha1 = "b0bc6d2cad1fed8b7fd59a1551a991cb3d2809e6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.5" +version = "0.19.6" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -876,6 +871,18 @@ git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" +[[deps.DeltaMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase"] +git-tree-sha1 = "eb4eafdd796377c6dfc1e842363291c5db8525c6" +uuid = "ea5de7a7-24c9-4a61-90ce-ef77c844b13f" +version = "1.0.0" + + [deps.DeltaMessagePassingRules.extensions] + DeltaMessagePassingRulesProjectionExt = "ExponentialFamilyProjection" + + [deps.DeltaMessagePassingRules.weakdeps] + ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + [[deps.Dictionaries]] deps = ["Indexing", "Random", "Serialization"] git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" @@ -894,58 +901,11 @@ git-tree-sha1 = "79a2aca180a85c690c58a020d47b426954b590f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.16.0" -[[deps.DifferentiationInterface]] -deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "2147a95a217cc8a78ec96ee03581adf129468e49" -uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.18" - - [deps.DifferentiationInterface.extensions] - DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" - DifferentiationInterfaceDiffractorExt = "Diffractor" - DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] - DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" - DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" - DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" - DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] - DifferentiationInterfaceGTPSAExt = "GTPSA" - DifferentiationInterfaceHyperHessiansExt = "HyperHessians" - DifferentiationInterfaceMooncakeExt = "Mooncake" - DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] - DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] - DifferentiationInterfaceSparseArraysExt = "SparseArrays" - DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" - DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" - DifferentiationInterfaceStaticArraysExt = "StaticArrays" - DifferentiationInterfaceSymbolicsExt = "Symbolics" - DifferentiationInterfaceTrackerExt = "Tracker" - DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] - - [deps.DifferentiationInterface.weakdeps] - Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" - Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" - FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" - HyperHessians = "06b494a0-c8e0-40cc-ad32-d99506a00a6c" - Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" - SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.DiscreteTransitionMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase"] +git-tree-sha1 = "1bf03a659aa103303f73a2ef40d74c206b02305a" +uuid = "039b7295-e235-4523-a933-c224bd9a7e58" +version = "1.0.0" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] @@ -964,10 +924,10 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" version = "1.11.0" [[deps.Distributions]] -deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "3c8a0a9a6d4a10bdfb6b751bd2b6051ed3e25fd4" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "Roots", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2ddbc341251ed713d39e503b504593a5d6789551" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.127" +version = "0.25.132" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -986,36 +946,27 @@ git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" -[[deps.DomainIntegrals]] -deps = ["CompositeTypes", "DomainSets", "FastGaussQuadrature", "FunctionMaps", "GaussQuadrature", "HCubature", "IntervalSets", "LinearAlgebra", "QuadGK", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "e90efe58cabfd58984ba5ba8edaf440251233384" -uuid = "cc6bae93-f070-4015-88fd-838f9505a86c" -version = "0.5.4" - [[deps.DomainSets]] deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "4599e0cd684f3ff6cbbab73c77553a3d01a8d74d" +git-tree-sha1 = "6ac879a64381881dc24f96a15e13e80204439906" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.18" +version = "0.8.3" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" DomainSetsRandomExt = "Random" + DomainSetsRecipesBaseExt = "RecipesBase" [deps.DomainSets.weakdeps] Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.7.0" -[[deps.EnumX]] -git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.7" - [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "8a4be429317c42cfae6a7fc03c31bad1970c310d" @@ -1024,9 +975,9 @@ version = "0.0.20230411+1" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "d36f682e590a83d63d1c7dbd287573764682d12a" +git-tree-sha1 = "4e468f521e1f9f86891cb07186de5df90360a666" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.11" +version = "0.1.12" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1036,9 +987,9 @@ version = "2.8.1+0" [[deps.ExponentialFamily]] deps = ["BayesBase", "BlockArrays", "Distributions", "DomainSets", "FastCholesky", "FillArrays", "ForwardDiff", "HCubature", "HypergeometricFunctions", "IntervalSets", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "PositiveFactorizations", "Random", "SparseArrays", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "a6b9907170f8e7958e01ff0d31b6838022f4db2f" +git-tree-sha1 = "22a03af5898b5f988efdd835f40af831164f7d4b" uuid = "62312e5e-252a-4322-ace9-a5f4bf9b357b" -version = "2.5.0" +version = "2.7.1" [[deps.FFMPEG]] deps = ["FFMPEG_jll"] @@ -1060,14 +1011,18 @@ version = "0.3.1" [[deps.FastCholesky]] deps = ["LinearAlgebra", "PositiveFactorizations"] -git-tree-sha1 = "1c0a81e006e40e9fcbd5f6f6cb42ac2700f86889" +git-tree-sha1 = "02f0dc1afe2c0bb73a0881727a4bf771a19ec190" uuid = "2d5283b6-8564-42b6-bb00-83ed8e915756" -version = "1.4.3" -weakdeps = ["StaticArraysCore"] +version = "1.5.0" [deps.FastCholesky.extensions] + ReactantExt = "Reactant" StaticArraysCoreExt = "StaticArraysCore" + [deps.FastCholesky.weakdeps] + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] git-tree-sha1 = "4916117dd032ec5959b7633aedbbac408ca5ddeb" @@ -1076,9 +1031,9 @@ version = "1.3.0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "8e9c059d6857607253e837730dbf780b6b151acd" +git-tree-sha1 = "6621fef488e496356c9c9625d0562c12a6070819" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.19.0" +version = "1.20.0" weakdeps = ["HTTP"] [deps.FileIO.extensions] @@ -1090,9 +1045,9 @@ version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "2f979084d1e13948a3352cf64a25df6bd3b4dca3" +git-tree-sha1 = "417289ac840d201005d9ed16789a46defccbe36d" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.16.0" +version = "1.18.1" weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [deps.FillArrays.extensions] @@ -1101,30 +1056,6 @@ weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] FillArraysStaticArraysExt = "StaticArrays" FillArraysStatisticsExt = "Statistics" -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "2e5742cda07276e1834281ada4cc71b6bfc87586" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.31.1" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" - FiniteDiffSparseArraysExt = "SparseArrays" - FiniteDiffStaticArraysExt = "StaticArrays" - - [deps.FiniteDiff.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - -[[deps.FixedArguments]] -deps = ["TupleTools"] -git-tree-sha1 = "befa1ad59c77643dec6fc20d71fd6f5c3afcdadd" -uuid = "4130a065-6d82-41fe-881e-7a5c65156f7d" -version = "0.1.1" - [[deps.FixedPointNumbers]] deps = ["Random", "Statistics"] git-tree-sha1 = "59af96b98217c6ef4ae0dfe065ac7c20831d1a84" @@ -1144,9 +1075,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "2c5d0b0e12088cde2cf84afb2784415b1ea3dfee" +git-tree-sha1 = "3b0f72e2ffef1a139ac450725c9ecd01c0a3c050" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.4.1" +version = "1.4.6" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -1170,10 +1101,11 @@ git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" version = "0.1.2" -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" -version = "1.11.0" +[[deps.GCVMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "StandardMessagePassingRules", "StatsFuns"] +git-tree-sha1 = "b9d896eff3b7dd887b119675f96d210abc31f2a9" +uuid = "2bb838d1-ae36-49a2-8c64-82a0acccfa93" +version = "1.0.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] @@ -1199,11 +1131,16 @@ git-tree-sha1 = "6fada551286ab6ea4ca1628cb2de9f166a2ec966" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" version = "0.73.26+0" -[[deps.GaussQuadrature]] -deps = ["SpecialFunctions"] -git-tree-sha1 = "eb6f1f48aa994f3018cbd029a17863c6535a266d" -uuid = "d54b0c1a-921d-58e0-8e36-89d8069c0969" -version = "0.5.8" +[[deps.Gamma]] +git-tree-sha1 = "86f86b6168a016ed88e4ae4e64577b98c3b59e8e" +uuid = "a0844989-3bd2-4988-8bea-c9407ab0941b" +version = "1.1.0" + +[[deps.GaussianCouplingMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesBase"] +git-tree-sha1 = "73948ad868fa022db11c678aaf1415ddb762f219" +uuid = "a57ce80c-d854-4eb3-973d-f0d0550df039" +version = "1.0.0" [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] @@ -1225,9 +1162,9 @@ version = "2.86.3+0" [[deps.GraphPPL]] deps = ["BitSetTuples", "DataStructures", "Dictionaries", "MacroTools", "MetaGraphsNext", "NamedTupleTools", "Static", "StaticArrays", "TupleTools", "Unrolled"] -git-tree-sha1 = "ea4b12cf4e8b76e4c075898724b37915808cace1" +git-tree-sha1 = "2d10297851848d1b6dc1dc335e549068e7890477" uuid = "b3f8163a-e979-4e85-b43e-1f63d8c8b42c" -version = "4.8.0" +version = "4.9.0" [deps.GraphPPL.extensions] GraphPPLDistributionsExt = "Distributions" @@ -1248,9 +1185,9 @@ version = "1.3.16+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "DataStructures", "Inflate", "LinearAlgebra", "Random", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "7eb45fe833a5b7c51cf6d89c5a841d5967e44be3" +git-tree-sha1 = "dbb2b976f605b220dfe139d6db9f3859680da09e" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.14.0" +version = "1.15.0" weakdeps = ["Distributed", "SharedArrays"] [deps.Graphs.extensions] @@ -1315,10 +1252,10 @@ uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" version = "2.14.0+0" [[deps.HypergeometricFunctions]] -deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" +deps = ["Gamma", "LinearAlgebra"] +git-tree-sha1 = "31bb6c92405c084617facc1d7ed9eb6c402d061e" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.28" +version = "0.3.30" [[deps.Hyperscript]] deps = ["Test"] @@ -1378,20 +1315,36 @@ version = "0.16.3" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.IntervalSets]] -git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" +git-tree-sha1 = "0db6aea5b64caa1c47e9fdd27394f0296f05e8bf" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.14" -weakdeps = ["Random", "RecipesBase", "Statistics"] +version = "0.7.15" [deps.IntervalSets.extensions] + IntervalSetsMakieExt = "Makie" IntervalSetsRandomExt = "Random" IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" + [deps.IntervalSets.weakdeps] + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + +[[deps.InverseFunctions]] +git-tree-sha1 = "5cc6ad3e2bfc75a11eed92632ee341d37f4a4536" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.18" +weakdeps = ["Dates", "Test"] + + [deps.InverseFunctions.extensions] + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" + [[deps.IrrationalConstants]] -git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" +git-tree-sha1 = "d22e8bdb3f03c300a103ff23c0dd5a654c6701de" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.6" +version = "0.2.7" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -1405,10 +1358,10 @@ uuid = "4138dd39-2aa7-5051-a626-17a0bb65d9c8" version = "0.13.5" [[deps.JLD2]] -deps = ["ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] -git-tree-sha1 = "941f87a0ae1b14d1ac2fa57245425b23a9d7a516" +deps = ["ChunkCodecCore", "ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] +git-tree-sha1 = "9ce2e7c49ae4a7035b7d60db3a553b1f6c16875d" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.6.4" +version = "0.6.7" [deps.JLD2.extensions] UnPackExt = "UnPack" @@ -1430,9 +1383,9 @@ version = "1.8.0" [[deps.JSON]] deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] -git-tree-sha1 = "c89d196f5ffb64bfbf80985b699ea913b0d2c211" +git-tree-sha1 = "9939eb6f799a963b3392ac4a1d49d3fc0646eb80" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "1.6.1" +version = "1.11.0" [deps.JSON.extensions] JSONArrowExt = ["ArrowTypes"] @@ -1498,24 +1451,6 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "405e938379dbbdb24c0d93bd5b9600ecce03d11c" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.9.10" - - [deps.LazyArrays.extensions] - LazyArraysBandedMatricesExt = "BandedMatrices" - LazyArraysBlockArraysExt = "BlockArrays" - LazyArraysBlockBandedMatricesExt = "BlockBandedMatrices" - LazyArraysStaticArraysExt = "StaticArrays" - - [deps.LazyArrays.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -1586,12 +1521,6 @@ git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" version = "2.42.0+0" -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] -git-tree-sha1 = "cef1ba655e8c1f65af9d96c4fffe18bf1a3a3291" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.7.1" - [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" @@ -1691,6 +1620,18 @@ git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" version = "0.3.3" +[[deps.MessagePassingRulesApproximations]] +deps = ["Compat", "FastCholesky", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra"] +git-tree-sha1 = "0904181cd2a25ed85da53a3426af17f0fb7bb193" +uuid = "36043009-14b3-4068-9fb9-f1e492c92d7d" +version = "1.0.0" + +[[deps.MessagePassingRulesBase]] +deps = ["BayesBase", "Compat", "FastCholesky", "IrrationalConstants", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "386ffd59dc3b21d3d36542c41f7b0326c821813f" +uuid = "4a5b64c7-30c9-4471-82f2-bbe8464b157d" +version = "1.1.2" + [[deps.MetaGraphsNext]] deps = ["Graphs", "JLD2", "SimpleTraits"] git-tree-sha1 = "1983a06112db00c54e171f5cff8788c8efbdae85" @@ -1729,17 +1670,11 @@ git-tree-sha1 = "7c3ff68a904d0f7404e5d2f7f5bc667934d8d616" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" version = "0.10.4" -[[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "FiniteDiff", "LinearAlgebra"] -git-tree-sha1 = "b3f76b463c7998473062992b246045e6961a074e" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "8.0.0" - [[deps.NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "dbd2e8cd2c1c27f0b584f6661b4309609c5a685e" +git-tree-sha1 = "676c0f1c1c34224d6869675047a54b42fdc7b8c5" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.1.4" +version = "1.1.5" [[deps.NamedTupleTools]] git-tree-sha1 = "90914795fc59df44120fe3fff6742bb0d7adb1d0" @@ -1794,14 +1729,14 @@ version = "5.0.11+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "1d1aaa7d449b58415f97d2839c318b70ffb525a0" +git-tree-sha1 = "5caab1056e0734b87f62ae3a3b520d47d3e994e8" uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.6.1" +version = "1.7.0" [[deps.OpenSSL_jll]] deps = ["Artifacts", "Libdl"] uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.4+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1809,18 +1744,6 @@ git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.6+0" -[[deps.Optim]] -deps = ["ADTypes", "EnumX", "FillArrays", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "PositiveFactorizations", "Printf", "SparseArrays", "Statistics"] -git-tree-sha1 = "6fe140aab6c042a73c9d5dc280b87b32eee44f9f" -uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "2.2.1" - - [deps.Optim.extensions] - OptimMOIExt = "MathOptInterface" - - [deps.Optim.weakdeps] - MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" - [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "e2bb57a313a74b8104064b7efd01406c0a50d2ff" @@ -1839,9 +1762,9 @@ version = "10.44.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a680e58292816791211582a4d8e44353835e991f" +git-tree-sha1 = "123266c25174ef6c8d4718920abc206452cf8de6" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.38" +version = "0.11.41" weakdeps = ["StatsBase"] [deps.PDMats.extensions] @@ -1854,10 +1777,10 @@ uuid = "36c8627f-9965-5494-a995-c6b170f724f3" version = "1.57.1+0" [[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "32a4e09c5f29402573d673901778a0e03b0807b9" +deps = ["Dates", "PrecompileTools"] +git-tree-sha1 = "663e8b48b789916221e0765393b289ca6c88f24e" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.6" +version = "3.0.0" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1918,12 +1841,6 @@ git-tree-sha1 = "e189d0623e7ce9c37389bac17e80aac3b0302e75" uuid = "7f904dfe-b85e-4ff6-b463-dae2292396a8" version = "0.7.83" -[[deps.PolyaGammaHybridSamplers]] -deps = ["Distributions", "Random", "SpecialFunctions", "StatsFuns"] -git-tree-sha1 = "9f6139650ff57f9d8528cd809ebc604c7e9738b1" -uuid = "c636ee4f-4591-4d8c-9fae-2dea21daa433" -version = "1.2.6" - [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" @@ -1938,9 +1855,9 @@ version = "1.3.4" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "8b770b60760d4451834fe79dd483e318eee709c4" +git-tree-sha1 = "aef1987d90dcc2e2cbd919ad10b2d25bcce4f418" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.5.2" +version = "1.6.1" [[deps.Primes]] deps = ["IntegerMathUtils"] @@ -1954,10 +1871,18 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" version = "1.11.0" [[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "fbb92c6c56b34e1a2c4c36058f68f332bec840e7" +deps = ["Printf"] +git-tree-sha1 = "ce5ba3edfdeba107a721748d53b5f5887f415853" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.11.0" +version = "1.13.0" + + [deps.ProgressMeter.extensions] + ProgressMeterDistributedExt = "Distributed" + ProgressMeterIJuliaExt = "IJulia" + + [deps.ProgressMeter.weakdeps] + Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" @@ -2027,18 +1952,16 @@ weakdeps = ["FixedPointNumbers"] RatiosFixedPointNumbersExt = "FixedPointNumbers" [[deps.ReactiveMP]] -deps = ["BayesBase", "DiffResults", "Distributions", "DomainIntegrals", "DomainSets", "ExponentialFamily", "FastCholesky", "FastGaussQuadrature", "FixedArguments", "ForwardDiff", "HCubature", "LazyArrays", "LinearAlgebra", "MacroTools", "MatrixCorrectionTools", "Optim", "PolyaGammaHybridSamplers", "PositiveFactorizations", "Random", "Rocket", "SpecialFunctions", "StatsBase", "StatsFuns", "TinyHugeNumbers", "Tullio", "TupleTools", "UUIDs"] -git-tree-sha1 = "e495df252e8564d65b215a2005684fe3a0deda93" +deps = ["BayesBase", "Compat", "Distributions", "LinearAlgebra", "MacroTools", "MessagePassingRulesBase", "Random", "Rocket", "TinyHugeNumbers", "TupleTools", "UUIDs"] +git-tree-sha1 = "944722ce6bfb8b1cdfb05a123afe9fe397fbd725" uuid = "a194aa59-28ba-4574-a09c-4a745416d6e3" -version = "6.3.0" +version = "7.0.0" [deps.ReactiveMP.extensions] - ReactiveMPOptimisersExt = "Optimisers" - ReactiveMPProjectionExt = "ExponentialFamilyProjection" + ReactiveMPReactantExt = "Reactant" [deps.ReactiveMP.weakdeps] - ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" - Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" [[deps.RecipesBase]] deps = ["PrecompileTools"] @@ -2077,34 +2000,60 @@ version = "0.9.0" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8" +git-tree-sha1 = "6d40b2fe70437b01397d2a4d5b020008da4e7019" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.5.1+0" +version = "0.5.2+0" [[deps.Rocket]] deps = ["DataStructures", "Sockets", "Unrolled"] -git-tree-sha1 = "12c8d9bb85176acf23057b679a894ea59eb922c8" +git-tree-sha1 = "ad8f448adaaedd25803f12bcff8d59a8a1dd8bbb" uuid = "df971d30-c9d6-4b37-b8ff-e965b2cb3a40" -version = "1.9.0" +version = "1.11.0" weakdeps = ["Observables"] [deps.Rocket.extensions] RocketObservablesExt = "Observables" +[[deps.Roots]] +deps = ["Accessors", "CommonSolve", "Printf"] +git-tree-sha1 = "e6ffa7bd4f8d0b8744d18f219304738d952f9a37" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "3.0.11" + + [deps.Roots.extensions] + RootsChainRulesCoreExt = "ChainRulesCore" + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + RootsUnitfulExt = "Unitful" + + [deps.Roots.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.RxInfer]] -deps = ["Base64", "BayesBase", "DataStructures", "Dates", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "Optim", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SparseArrays", "Static", "Statistics", "TupleTools", "UUIDs"] -git-tree-sha1 = "4098a13ad0db656071d6e71ff085cbec69300412" +deps = ["AutoregressiveMessagePassingRules", "Base64", "BayesBase", "DataStructures", "Dates", "DeltaMessagePassingRules", "DiscreteTransitionMessagePassingRules", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GCVMessagePassingRules", "GaussianCouplingMessagePassingRules", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "PrecompileTools", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SoftDotMessagePassingRules", "SparseArrays", "StandardMessagePassingRules", "Static", "Statistics", "TupleTools", "UUIDs"] +git-tree-sha1 = "cbb0595f742056ccab20beba5cf2a1253294c6dd" uuid = "86711068-29c9-4ff7-b620-ae75d7495b3d" -version = "5.5.0" +version = "6.1.0" [deps.RxInfer.extensions] + OptimExt = "Optim" PrettyTablesExt = "PrettyTables" ProjectionExt = "ExponentialFamilyProjection" + ReactantExt = "Reactant" TensorBoardLoggerExt = "TensorBoardLogger" [deps.RxInfer.weakdeps] ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.SHA]] @@ -2112,9 +2061,10 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLPublic]] -git-tree-sha1 = "912a1a941afb2a232183a485d86a437a25f88520" +deps = ["PrecompileTools"] +git-tree-sha1 = "74685afb51732a464fbce79a72708f7c4203ceb7" uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" -version = "1.2.0" +version = "1.3.0" [[deps.ScopedValues]] deps = ["HashArrayMappedTries", "Logging"] @@ -2138,12 +2088,6 @@ version = "1.4.10" uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" version = "1.11.0" -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "c5391c6ace3bc430ca630251d02ea9687169ca68" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.2" - [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" @@ -2170,6 +2114,12 @@ version = "0.9.6" uuid = "6462fe0b-24de-5631-8697-dd941f90decc" version = "1.11.0" +[[deps.SoftDotMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "8ccebfa9b93d9908178cc0e97c4f4a480708740d" +uuid = "fdfab25d-afbd-4817-865a-cd280c067f5e" +version = "1.0.0" + [[deps.SortingAlgorithms]] deps = ["DataStructures"] git-tree-sha1 = "13cd91cc9be159e3f4d95b857fa2aa383b53772a" @@ -2183,9 +2133,9 @@ version = "1.12.0" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "6547cbdd8ce32efba0d21c5a40fa96d1a3548f9f" +git-tree-sha1 = "429071b23f4c9a13fb6582f807cc2ef454082408" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.8.0" +version = "2.9.0" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2197,17 +2147,23 @@ git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" +[[deps.StandardMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "LogExpFunctions", "MatrixCorrectionTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "SpecialFunctions", "StatsFuns"] +git-tree-sha1 = "ca7e44b8d9c49483dfab3fc5e91346d032cb7d45" +uuid = "d166223a-7879-43b1-add3-64af0a178e9e" +version = "1.0.0" + [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "cbc2fed5b692d12e199397471ba6c5988f69b629" +git-tree-sha1 = "474a5283ad435618090122872eea6a8165ea6bcf" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.4.1" +version = "1.4.6" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" +git-tree-sha1 = "8a8a52f887f38d44014e24ee46b8a7311c625f6d" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.18" +version = "1.9.24" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2221,9 +2177,9 @@ version = "1.4.4" [[deps.Statistics]] deps = ["LinearAlgebra"] -git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" +git-tree-sha1 = "e2b53ce13a53367e96601081e33d34746b571bad" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.11.1" +version = "1.11.5" weakdeps = ["SparseArrays"] [deps.Statistics.extensions] @@ -2237,24 +2193,21 @@ version = "1.8.0" [[deps.StatsBase]] deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "e4d7a1a0edc20af42689ea6f4f3587a2175d50ee" +git-tree-sha1 = "adb9da019510162e67a4493fc235c23203d8b09e" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.12" +version = "0.34.13" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" +git-tree-sha1 = "0aa97471d55945556e8d2859568b8317cef98351" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.5.2" +version = "1.5.3" +weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" - [deps.StatsFuns.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" - [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] git-tree-sha1 = "88cf3587711d9ad0a55722d339a013c4c56c5bbc" @@ -2263,16 +2216,20 @@ version = "0.15.8" [[deps.StructUtils]] deps = ["Dates", "UUIDs"] -git-tree-sha1 = "82bee338d650aa515f31866c460cb7e3bcef90b8" +git-tree-sha1 = "ad435e30854ed0f50f4b7f67edd71664afecc5d8" uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" -version = "2.8.2" +version = "2.10.0" [deps.StructUtils.extensions] + StructUtilsDataFramesExt = ["DataFrames"] + StructUtilsLazilyInitializedFieldsExt = ["LazilyInitializedFields"] StructUtilsMeasurementsExt = ["Measurements"] StructUtilsStaticArraysCoreExt = ["StaticArraysCore"] StructUtilsTablesExt = ["Tables"] [deps.StructUtils.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazilyInitializedFields = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" @@ -2330,9 +2287,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" version = "1.11.0" [[deps.TinyHugeNumbers]] -git-tree-sha1 = "83c6abf376718345a85c071b249ef6692a8936d4" +git-tree-sha1 = "d5b24fd37550762d78280fb37c1800c3ea7e95cb" uuid = "783c9a47-75a3-44ac-a16b-f1ab7b3acf04" -version = "1.0.3" +version = "1.0.4" [[deps.TranscodingStreams]] git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" @@ -2344,33 +2301,16 @@ git-tree-sha1 = "311349fd1c93a31f783f977a71e8b062a57d4101" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.13" -[[deps.Tullio]] -deps = ["DiffRules", "LinearAlgebra", "Requires"] -git-tree-sha1 = "de0febfe1243e89f352abd4ca0e9de6c8e6190c5" -uuid = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc" -version = "0.3.9" - - [deps.Tullio.extensions] - TullioCUDAExt = "CUDA" - TullioChainRulesCoreExt = "ChainRulesCore" - TullioFillArraysExt = "FillArrays" - TullioTrackerExt = "Tracker" - - [deps.Tullio.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.TupleTools]] -git-tree-sha1 = "41e43b9dc950775eac654b9f845c839cd2f1821e" +git-tree-sha1 = "a1c7e924f746f0ebc792425e7d4d2ea5b4470697" uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" -version = "1.6.0" +version = "1.6.1" [[deps.URIs]] -git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" +deps = ["Serialization"] +git-tree-sha1 = "0392e5e3c5327b90a487b0ff3e818c4aecd3660b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.6.1" +version = "1.7.1" [[deps.UUIDs]] deps = ["Random", "SHA"] From 042599c4fd8407558957b66906d27e5f9d84421a Mon Sep 17 00:00:00 2001 From: bvdmitri Date: Thu, 22 Oct 2026 10:38:28 +0200 Subject: [PATCH 5/5] Pin the RxInfer assignments to RxInfer 6.1 A1, A2 and the resit pinned RxInfer 4.6/4.7 because tools/update_notebook_packages.jl only updates lectures, probprog and minis. They are templates whose only RxInfer code is `using RxInfer`, so they now pin RxInfer ~6.1.0 like the lecture notebooks, resolved on Julia 1.12.7. The resit's environment (Julia 1.10.10 before) was updated as a whole within its compat bounds. All three run headless in Pluto without errors. Co-Authored-By: Claude Opus 5.5 --- assignments/A1 - Observational astronomy.jl | 738 ++++++------- assignments/A2 - Tracking satellites.jl | 736 ++++++------- assignments/Resit - robot localization.jl | 1057 +++++++++---------- 3 files changed, 1187 insertions(+), 1344 deletions(-) diff --git a/assignments/A1 - Observational astronomy.jl b/assignments/A1 - Observational astronomy.jl index 767abf7a..c16ce2e6 100644 --- a/assignments/A1 - Observational astronomy.jl +++ b/assignments/A1 - Observational astronomy.jl @@ -1,5 +1,5 @@ ### A Pluto.jl notebook ### -# v0.20.21 +# v1.0.3 using Markdown using InteractiveUtils @@ -688,10 +688,10 @@ StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" [compat] BmlipTeachingTools = "~1.3.1" -Distributions = "~0.25.122" +Distributions = "~0.25.132" JLD = "~0.13.5" -Plots = "~1.40.17" -RxInfer = "~4.6.2" +Plots = "~1.40.20" +RxInfer = "~6.1.0" StableRNGs = "~1.0.3" StatsPlots = "~0.15.8" """ @@ -700,24 +700,9 @@ StatsPlots = "~0.15.8" PLUTO_MANIFEST_TOML_CONTENTS = """ # This file is machine-generated - editing it directly is not advised -julia_version = "1.12.2" +julia_version = "1.12.7" manifest_format = "2.0" -project_hash = "5efb8d6520f2e722a1db4a6b4fe1be4c9238084d" - -[[deps.ADTypes]] -git-tree-sha1 = "27cecae79e5cc9935255f90c53bb831cc3c870d7" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.18.0" - - [deps.ADTypes.extensions] - ADTypesChainRulesCoreExt = "ChainRulesCore" - ADTypesConstructionBaseExt = "ConstructionBase" - ADTypesEnzymeCoreExt = "EnzymeCore" - - [deps.ADTypes.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" +project_hash = "7ef53f7f7cc99f81fd1ac7f8e931be35bbbf702b" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -736,11 +721,35 @@ git-tree-sha1 = "6e1d2a35f2f90a4bc7c2ed98079b2ba09c35b83a" uuid = "6e696c72-6542-2067-7265-42206c756150" version = "1.3.2" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "7063ad1083578215c7c4bf410368150abe8d5524" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.45" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" +deps = ["LinearAlgebra"] +git-tree-sha1 = "dee8388a9bec89c8713ad176f96960ae2f98598a" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.4.0" +version = "4.7.4" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -775,45 +784,11 @@ git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.1+1" -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "d2cd034553ee6ca084edaaf8ed6c9d50fd01555d" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.21.0" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] - ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" - ArrayInterfaceChainRulesExt = "ChainRules" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceMetalExt = "Metal" - ArrayInterfaceReverseDiffExt = "ReverseDiff" - ArrayInterfaceSparseArraysExt = "SparseArrays" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" - ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "355ab2d61069927d4247cd69ad0e1f140b31e30d" +git-tree-sha1 = "b4a2d2dfcaedf8f0cb93a970c4ccba6f632f14cc" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.12.0" +version = "1.15.1" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -823,6 +798,12 @@ weakdeps = ["SparseArrays"] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" version = "1.11.0" +[[deps.AutoregressiveMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "4c9f3f4edd4580e385535bce39a6a39f8f1a6aa9" +uuid = "bbb8872a-15f9-43f6-924d-37f12d04ed53" +version = "1.0.0" + [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" @@ -835,18 +816,18 @@ version = "1.11.0" [[deps.BayesBase]] deps = ["Distributions", "DomainSets", "LinearAlgebra", "Random", "SpecialFunctions", "StaticArrays", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "5b723bf6b1081cab4d263e425be097224e0f434f" +git-tree-sha1 = "cadec5ad37b53e1198f36524b30297fc0df98aae" uuid = "b4ee3484-f114-42fe-b91c-797d54a0c67e" -version = "1.5.8" +version = "1.5.12" weakdeps = ["FastCholesky"] [deps.BayesBase.extensions] FastCholeskyExt = "FastCholesky" [[deps.BitFlags]] -git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" +git-tree-sha1 = "bbe1079eecf9c9fbb52765193ad2bae27ae09bc8" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.9" +version = "0.1.10" [[deps.BitSetTuples]] deps = ["TupleTools"] @@ -856,9 +837,9 @@ version = "1.1.5" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "79e651aa489a7879107d66e3d1948e9aa1b4055e" +git-tree-sha1 = "876d4c4b941cc8b079da79c88d9c2dee52b9dd13" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "1.7.2" +version = "1.10.3" [deps.BlockArrays.extensions] BlockArraysAdaptExt = "Adapt" @@ -909,15 +890,15 @@ weakdeps = ["SparseArrays"] ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChunkCodecCore]] -git-tree-sha1 = "51f4c10ee01bda57371e977931de39ee0f0cdb3e" +git-tree-sha1 = "3496e2b359c27793d12bec54ec94be7983a6ceb2" uuid = "0b6fb165-00bc-4d37-ab8b-79f91016dbe1" -version = "1.0.0" +version = "1.0.2" [[deps.ChunkCodecLibZlib]] deps = ["ChunkCodecCore", "Zlib_jll"] -git-tree-sha1 = "cee8104904c53d39eb94fd06cbe60cb5acde7177" +git-tree-sha1 = "d4101e848e8d3f585d61d244c2fe0c80a70e6b3b" uuid = "4c0bbee4-addc-4d73-81a0-b6caacae83c8" -version = "1.0.0" +version = "1.1.0" [[deps.ChunkCodecLibZstd]] deps = ["ChunkCodecCore", "Zstd_jll"] @@ -933,9 +914,9 @@ version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" +git-tree-sha1 = "970758a3d591a2a5c2a907c53f2e2f8c1b1d3537" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.8" +version = "0.7.9" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -970,9 +951,15 @@ uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "8010b6bb3388abe68d95743dcbea77650bb2eddf" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.3" +version = "1.1.0" + +[[deps.CommonSolve]] +deps = ["PrecompileTools"] +git-tree-sha1 = "6c389fa857f6ca5a95474b52a52023fd77f24cb7" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.14" [[deps.CommonSubexpressions]] deps = ["MacroTools"] @@ -981,9 +968,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" [[deps.CommonWorldInvalidations]] -git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" +deps = ["PrecompileTools"] +git-tree-sha1 = "7c4ea0adfb7238bf4678aa36325863fab6163f6f" uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" -version = "1.0.0" +version = "1.2.2" [[deps.Compat]] deps = ["TOML", "UUIDs"] @@ -998,18 +986,27 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.3.0+1" +version = "1.3.1+2" [[deps.CompositeTypes]] git-tree-sha1 = "bce26c3dab336582805503bed209faab1c279768" uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657" version = "0.1.4" +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "d9d26935a0bcffc87d2613ce14c527c99fc543fd" +git-tree-sha1 = "d5e5fa1f0d6ca517edbbcd734efa93c6639405b0" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.5.0" +version = "2.7.1" [[deps.ConstructionBase]] git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" @@ -1033,10 +1030,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "4e1fe97fdaed23e9dc21d4d664bea76b65fc50a0" +deps = ["OrderedCollections"] +git-tree-sha1 = "b0bc6d2cad1fed8b7fd59a1551a991cb3d2809e6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.22" +version = "0.19.6" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -1060,11 +1057,23 @@ git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" +[[deps.DeltaMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase"] +git-tree-sha1 = "eb4eafdd796377c6dfc1e842363291c5db8525c6" +uuid = "ea5de7a7-24c9-4a61-90ce-ef77c844b13f" +version = "1.0.0" + + [deps.DeltaMessagePassingRules.extensions] + DeltaMessagePassingRulesProjectionExt = "ExponentialFamilyProjection" + + [deps.DeltaMessagePassingRules.weakdeps] + ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + [[deps.Dictionaries]] deps = ["Indexing", "Random", "Serialization"] -git-tree-sha1 = "a86af9c4c4f33e16a2b2ff43c2113b2f390081fa" +git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" -version = "0.4.5" +version = "0.4.6" [[deps.DiffResults]] deps = ["StaticArraysCore"] @@ -1074,59 +1083,15 @@ version = "1.1.0" [[deps.DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +git-tree-sha1 = "79a2aca180a85c690c58a020d47b426954b590f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.DifferentiationInterface]] -deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "529bebbc74b36a4cfea09dd2aecb1288cd713a6d" -uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.9" +version = "1.16.0" - [deps.DifferentiationInterface.extensions] - DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" - DifferentiationInterfaceDiffractorExt = "Diffractor" - DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] - DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" - DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" - DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" - DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" - DifferentiationInterfaceGTPSAExt = "GTPSA" - DifferentiationInterfaceMooncakeExt = "Mooncake" - DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] - DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] - DifferentiationInterfaceSparseArraysExt = "SparseArrays" - DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" - DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" - DifferentiationInterfaceStaticArraysExt = "StaticArrays" - DifferentiationInterfaceSymbolicsExt = "Symbolics" - DifferentiationInterfaceTrackerExt = "Tracker" - DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] - - [deps.DifferentiationInterface.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" - Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" - FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" - Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" - SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.DiscreteTransitionMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase"] +git-tree-sha1 = "1bf03a659aa103303f73a2ef40d74c206b02305a" +uuid = "039b7295-e235-4523-a933-c224bd9a7e58" +version = "1.0.0" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] @@ -1145,19 +1110,21 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" version = "1.11.0" [[deps.Distributions]] -deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "3bc002af51045ca3b47d2e1787d6ce02e68b943a" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "Roots", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2ddbc341251ed713d39e503b504593a5d6789551" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.122" +version = "0.25.132" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsSparseConnectivityTracerExt = "SparseConnectivityTracer" DistributionsTestExt = "Test" [deps.Distributions.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.DocStringExtensions]] @@ -1165,36 +1132,27 @@ git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" -[[deps.DomainIntegrals]] -deps = ["CompositeTypes", "DomainSets", "FastGaussQuadrature", "GaussQuadrature", "HCubature", "IntervalSets", "LinearAlgebra", "QuadGK", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "934bf806ef2948114243f25e84a3ddf775d0f1a6" -uuid = "cc6bae93-f070-4015-88fd-838f9505a86c" -version = "0.5.2" - [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "c249d86e97a7e8398ce2068dce4c078a1c3464de" +deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "6ac879a64381881dc24f96a15e13e80204439906" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.16" +version = "0.8.3" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" DomainSetsRandomExt = "Random" + DomainSetsRecipesBaseExt = "RecipesBase" [deps.DomainSets.weakdeps] Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.7.0" -[[deps.EnumX]] -git-tree-sha1 = "bddad79635af6aec424f53ed8aad5d7555dc6f00" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.5" - [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "8a4be429317c42cfae6a7fc03c31bad1970c310d" @@ -1203,9 +1161,9 @@ version = "0.0.20230411+1" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "d36f682e590a83d63d1c7dbd287573764682d12a" +git-tree-sha1 = "4e468f521e1f9f86891cb07186de5df90360a666" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.11" +version = "0.1.12" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1215,9 +1173,9 @@ version = "2.7.3+0" [[deps.ExponentialFamily]] deps = ["BayesBase", "BlockArrays", "Distributions", "DomainSets", "FastCholesky", "FillArrays", "ForwardDiff", "HCubature", "HypergeometricFunctions", "IntervalSets", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "PositiveFactorizations", "Random", "SparseArrays", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "8351e116e111c97ad57718851da00ae5a5f92e0c" +git-tree-sha1 = "22a03af5898b5f988efdd835f40af831164f7d4b" uuid = "62312e5e-252a-4322-ace9-a5f4bf9b357b" -version = "2.1.1" +version = "2.7.1" [[deps.FFMPEG]] deps = ["FFMPEG_jll"] @@ -1245,25 +1203,29 @@ version = "3.3.11+0" [[deps.FastCholesky]] deps = ["LinearAlgebra", "PositiveFactorizations"] -git-tree-sha1 = "1c0a81e006e40e9fcbd5f6f6cb42ac2700f86889" +git-tree-sha1 = "02f0dc1afe2c0bb73a0881727a4bf771a19ec190" uuid = "2d5283b6-8564-42b6-bb00-83ed8e915756" -version = "1.4.3" -weakdeps = ["StaticArraysCore"] +version = "1.5.0" [deps.FastCholesky.extensions] + ReactantExt = "Reactant" StaticArraysCoreExt = "StaticArraysCore" + [deps.FastCholesky.weakdeps] + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "0044e9f5e49a57e88205e8f30ab73928b05fe5b6" +git-tree-sha1 = "4916117dd032ec5959b7633aedbbac408ca5ddeb" uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "1.1.0" +version = "1.3.0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "d60eb76f37d7e5a40cc2e7c36974d864b82dc802" +git-tree-sha1 = "6621fef488e496356c9c9625d0562c12a6070819" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.17.1" +version = "1.20.0" weakdeps = ["HTTP"] [deps.FileIO.extensions] @@ -1275,40 +1237,17 @@ version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "173e4d8f14230a7523ae11b9a3fa9edb3e0efd78" +git-tree-sha1 = "417289ac840d201005d9ed16789a46defccbe36d" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.14.0" -weakdeps = ["PDMats", "SparseArrays", "Statistics"] +version = "1.18.1" +weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [deps.FillArrays.extensions] FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" + FillArraysStaticArraysExt = "StaticArrays" FillArraysStatisticsExt = "Statistics" -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" - FiniteDiffSparseArraysExt = "SparseArrays" - FiniteDiffStaticArraysExt = "StaticArrays" - - [deps.FiniteDiff.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - -[[deps.FixedArguments]] -deps = ["TupleTools"] -git-tree-sha1 = "befa1ad59c77643dec6fc20d71fd6f5c3afcdadd" -uuid = "4130a065-6d82-41fe-881e-7a5c65156f7d" -version = "0.1.1" - [[deps.FixedPointNumbers]] deps = ["Statistics"] git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" @@ -1328,9 +1267,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "ba6ce081425d0afb2bedd00d9884464f764a9225" +git-tree-sha1 = "3b0f72e2ffef1a139ac450725c9ecd01c0a3c050" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.2.2" +version = "1.4.6" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -1348,10 +1287,17 @@ git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.17+0" -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" -version = "1.11.0" +[[deps.FunctionMaps]] +deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" +uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" +version = "0.1.2" + +[[deps.GCVMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "StandardMessagePassingRules", "StatsFuns"] +git-tree-sha1 = "b9d896eff3b7dd887b119675f96d210abc31f2a9" +uuid = "2bb838d1-ae36-49a2-8c64-82a0acccfa93" +version = "1.0.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] @@ -1371,11 +1317,16 @@ git-tree-sha1 = "27299071cc29e409488ada41ec7643e0ab19091f" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" version = "0.73.17+0" -[[deps.GaussQuadrature]] -deps = ["SpecialFunctions"] -git-tree-sha1 = "eb6f1f48aa994f3018cbd029a17863c6535a266d" -uuid = "d54b0c1a-921d-58e0-8e36-89d8069c0969" -version = "0.5.8" +[[deps.Gamma]] +git-tree-sha1 = "86f86b6168a016ed88e4ae4e64577b98c3b59e8e" +uuid = "a0844989-3bd2-4988-8bea-c9407ab0941b" +version = "1.1.0" + +[[deps.GaussianCouplingMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesBase"] +git-tree-sha1 = "73948ad868fa022db11c678aaf1415ddb762f219" +uuid = "a57ce80c-d854-4eb3-973d-f0d0550df039" +version = "1.0.0" [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] @@ -1397,9 +1348,9 @@ version = "2.86.0+0" [[deps.GraphPPL]] deps = ["BitSetTuples", "DataStructures", "Dictionaries", "MacroTools", "MetaGraphsNext", "NamedTupleTools", "Static", "StaticArrays", "TupleTools", "Unrolled"] -git-tree-sha1 = "db4aece54ddddaa9e8d2880eb7cfc6f29bd1a650" +git-tree-sha1 = "2d10297851848d1b6dc1dc335e549068e7890477" uuid = "b3f8163a-e979-4e85-b43e-1f63d8c8b42c" -version = "4.6.5" +version = "4.9.0" [deps.GraphPPL.extensions] GraphPPLDistributionsExt = "Distributions" @@ -1419,10 +1370,14 @@ uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" version = "1.3.15+0" [[deps.Graphs]] -deps = ["ArnoldiMethod", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "7a98c6502f4632dbe9fb1973a4244eaa3324e84d" +deps = ["ArnoldiMethod", "DataStructures", "Inflate", "LinearAlgebra", "Random", "SimpleTraits", "SparseArrays", "Statistics"] +git-tree-sha1 = "dbb2b976f605b220dfe139d6db9f3859680da09e" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.13.1" +version = "1.15.0" +weakdeps = ["Distributed", "SharedArrays"] + + [deps.Graphs.extensions] + GraphsSharedArraysExt = "SharedArrays" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -1437,9 +1392,9 @@ version = "0.1.2" [[deps.HCubature]] deps = ["Combinatorics", "DataStructures", "LinearAlgebra", "QuadGK", "StaticArrays"] -git-tree-sha1 = "19ef9f0cb324eed957b7fe7257ac84e8ed8a48ec" +git-tree-sha1 = "8ee627fb73ecba0b5254158b04d4745611b404a1" uuid = "19dc6840-f33b-545b-b366-655c7e3ffd49" -version = "1.7.0" +version = "1.8.0" [[deps.HDF5]] deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] @@ -1461,9 +1416,9 @@ version = "1.14.6+0" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e6fe50ae7f23d171f44e311c2960294aaa0beb5" +git-tree-sha1 = "51059d23c8bb67911a2e6fd5130229113735fc7e" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.19" +version = "1.11.0" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] @@ -1483,10 +1438,10 @@ uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" version = "2.12.2+0" [[deps.HypergeometricFunctions]] -deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" +deps = ["Gamma", "LinearAlgebra"] +git-tree-sha1 = "31bb6c92405c084617facc1d7ed9eb6c402d061e" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.28" +version = "0.3.30" [[deps.Hyperscript]] deps = ["Test"] @@ -1544,20 +1499,36 @@ weakdeps = ["ForwardDiff", "Unitful"] InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -git-tree-sha1 = "5fbb102dcb8b1a858111ae81d56682376130517d" +git-tree-sha1 = "0db6aea5b64caa1c47e9fdd27394f0296f05e8bf" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.11" -weakdeps = ["Random", "RecipesBase", "Statistics"] +version = "0.7.15" [deps.IntervalSets.extensions] + IntervalSetsMakieExt = "Makie" IntervalSetsRandomExt = "Random" IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" + [deps.IntervalSets.weakdeps] + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + +[[deps.InverseFunctions]] +git-tree-sha1 = "5cc6ad3e2bfc75a11eed92632ee341d37f4a4536" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.18" +weakdeps = ["Dates", "Test"] + + [deps.InverseFunctions.extensions] + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" + [[deps.IrrationalConstants]] -git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" +git-tree-sha1 = "d22e8bdb3f03c300a103ff23c0dd5a654c6701de" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.6" +version = "0.2.7" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -1571,15 +1542,17 @@ uuid = "4138dd39-2aa7-5051-a626-17a0bb65d9c8" version = "0.13.5" [[deps.JLD2]] -deps = ["ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] -git-tree-sha1 = "da2e9b4d1abbebdcca0aa68afa0aa272102baad7" +deps = ["ChunkCodecCore", "ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] +git-tree-sha1 = "9ce2e7c49ae4a7035b7d60db3a553b1f6c16875d" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.6.2" -weakdeps = ["UnPack"] +version = "0.6.7" [deps.JLD2.extensions] UnPackExt = "UnPack" + [deps.JLD2.weakdeps] + UnPack = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" + [[deps.JLFzf]] deps = ["REPL", "Random", "fzf_jll"] git-tree-sha1 = "82f7acdc599b65e0f8ccd270ffa1467c21cb647b" @@ -1588,9 +1561,9 @@ version = "0.1.11" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "0533e564aae234aff59ab625543145446d8b6ec2" +git-tree-sha1 = "7204148362dafe5fe6a273f855b8ccbe4df8173e" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.7.1" +version = "1.8.0" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] @@ -1662,24 +1635,6 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "79ee64f6ba0a5a49930f51c86f60d7526b5e12c8" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.8.0" - - [deps.LazyArrays.extensions] - LazyArraysBandedMatricesExt = "BandedMatrices" - LazyArraysBlockArraysExt = "BlockArrays" - LazyArraysBlockBandedMatricesExt = "BlockBandedMatrices" - LazyArraysStaticArraysExt = "StaticArrays" - - [deps.LazyArrays.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -1750,12 +1705,6 @@ git-tree-sha1 = "2a7a12fc0a4e7fb773450d17975322aa77142106" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" version = "2.41.2+0" -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "4adee99b7262ad2a1a4bbbc59d993d24e55ea96f" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.4.0" - [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" @@ -1840,26 +1789,38 @@ version = "1.2.0" [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] -git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +git-tree-sha1 = "8785729fa736197687541f7053f6d8ab7fc44f92" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.9" +version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "3cce3511ca2c6f87b19c34ffc623417ed2798cbd" +git-tree-sha1 = "ff69a2b1330bcb730b9ac1ab7dd680176f5896b8" uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.10+0" +version = "2.28.1010+0" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" version = "0.3.2" +[[deps.MessagePassingRulesApproximations]] +deps = ["Compat", "FastCholesky", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra"] +git-tree-sha1 = "0904181cd2a25ed85da53a3426af17f0fb7bb193" +uuid = "36043009-14b3-4068-9fb9-f1e492c92d7d" +version = "1.0.0" + +[[deps.MessagePassingRulesBase]] +deps = ["BayesBase", "Compat", "FastCholesky", "IrrationalConstants", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "386ffd59dc3b21d3d36542c41f7b0326c821813f" +uuid = "4a5b64c7-30c9-4471-82f2-bbe8464b157d" +version = "1.1.2" + [[deps.MetaGraphsNext]] deps = ["Graphs", "JLD2", "SimpleTraits"] -git-tree-sha1 = "c3f7e597f1cf5fe04e68e7907af47f055cad211c" +git-tree-sha1 = "1983a06112db00c54e171f5cff8788c8efbdae85" uuid = "fa8bd995-216d-47f1-8a91-f3b68fbeb377" -version = "0.7.4" +version = "0.7.5" [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1879,7 +1840,7 @@ version = "1.11.0" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.5.20" +version = "2025.11.4" [[deps.MultivariateStats]] deps = ["Arpack", "Distributions", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1887,17 +1848,11 @@ git-tree-sha1 = "816620e3aac93e5b5359e4fdaf23ca4525b00ddf" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" version = "0.10.3" -[[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "25a6638571a902ecfb1ae2a18fc1575f86b1d4df" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.10.0" - [[deps.NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "9b8215b1ee9e78a293f99797cd31375471b2bcae" +git-tree-sha1 = "676c0f1c1c34224d6869675047a54b42fdc7b8c5" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.1.3" +version = "1.1.5" [[deps.NamedTupleTools]] git-tree-sha1 = "90914795fc59df44120fe3fff6742bb0d7adb1d0" @@ -1951,15 +1906,15 @@ uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" version = "5.0.8+0" [[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "f1a7e086c677df53e064e0fdd2c9d0b0833e3f6e" +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "5caab1056e0734b87f62ae3a3b520d47d3e994e8" uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.5.0" +version = "1.7.0" [[deps.OpenSSL_jll]] deps = ["Artifacts", "Libdl"] uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.4+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1967,18 +1922,6 @@ git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.6+0" -[[deps.Optim]] -deps = ["Compat", "EnumX", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "61942645c38dd2b5b78e2082c9b51ab315315d10" -uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.13.2" - - [deps.Optim.extensions] - OptimMOIExt = "MathOptInterface" - - [deps.Optim.weakdeps] - MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" - [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "c392fc5dd032381919e3b22dd32d6443760ce7ea" @@ -1986,9 +1929,9 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.5.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "05868e21324cede2207c6f0f466b4bfef6d5e7ee" +git-tree-sha1 = "94ba93778373a53bfd5a0caaf7d809c445292ff4" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.8.1" +version = "1.8.2" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1997,9 +1940,9 @@ version = "10.44.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d922b4d80d1e12c658da7785e754f4796cc1d60d" +git-tree-sha1 = "123266c25174ef6c8d4718920abc206452cf8de6" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.36" +version = "0.11.41" weakdeps = ["StatsBase"] [deps.PDMats.extensions] @@ -2011,17 +1954,11 @@ git-tree-sha1 = "1f7f9bbd5f7a2e5a9f7d96e51c9754454ea7f60b" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" version = "1.56.4+0" -[[deps.Parameters]] -deps = ["OrderedCollections", "UnPack"] -git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" -uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" -version = "0.12.3" - [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "ba0dc8a8a67cacac4842631f960c046e4e563675" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.8" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -2032,7 +1969,7 @@ version = "0.44.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.12.0" +version = "1.12.1" weakdeps = ["REPL"] [deps.Pkg.extensions] @@ -2082,12 +2019,6 @@ git-tree-sha1 = "3faff84e6f97a7f18e0dd24373daa229fd358db5" uuid = "7f904dfe-b85e-4ff6-b463-dae2292396a8" version = "0.7.73" -[[deps.PolyaGammaHybridSamplers]] -deps = ["Distributions", "Random", "SpecialFunctions", "StatsFuns"] -git-tree-sha1 = "9f6139650ff57f9d8528cd809ebc604c7e9738b1" -uuid = "c636ee4f-4591-4d8c-9fae-2dea21daa433" -version = "1.2.6" - [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" @@ -2096,15 +2027,15 @@ version = "0.2.4" [[deps.PrecompileTools]] deps = ["Preferences"] -git-tree-sha1 = "07a921781cab75691315adc645096ed5e370cb77" +git-tree-sha1 = "edbeefc7a4889f528644251bdb5fc9ab5348bc2c" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.3.3" +version = "1.3.4" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "0f27480397253da18fe2c12a4ba4eb9eb208bf3d" +git-tree-sha1 = "aef1987d90dcc2e2cbd919ad10b2d25bcce4f418" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.5.0" +version = "1.6.1" [[deps.Printf]] deps = ["Unicode"] @@ -2112,15 +2043,23 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" version = "1.11.0" [[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "fbb92c6c56b34e1a2c4c36058f68f332bec840e7" +deps = ["Printf"] +git-tree-sha1 = "ce5ba3edfdeba107a721748d53b5f5887f415853" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.11.0" +version = "1.13.0" + + [deps.ProgressMeter.extensions] + ProgressMeterDistributedExt = "Distributed" + ProgressMeterIJuliaExt = "IJulia" + + [deps.ProgressMeter.weakdeps] + Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" [[deps.PtrArrays]] -git-tree-sha1 = "1d36ef11a9aaf1e8b74dacc6a731dd1de8fd493d" +git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" -version = "1.3.0" +version = "1.4.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] @@ -2148,9 +2087,9 @@ version = "6.8.2+2" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -2179,20 +2118,16 @@ weakdeps = ["FixedPointNumbers"] RatiosFixedPointNumbersExt = "FixedPointNumbers" [[deps.ReactiveMP]] -deps = ["BayesBase", "DataStructures", "DiffResults", "Distributions", "DomainIntegrals", "DomainSets", "ExponentialFamily", "FastCholesky", "FastGaussQuadrature", "FixedArguments", "ForwardDiff", "HCubature", "LazyArrays", "LinearAlgebra", "MacroTools", "MatrixCorrectionTools", "Optim", "PolyaGammaHybridSamplers", "PositiveFactorizations", "Random", "Rocket", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "TinyHugeNumbers", "Tullio", "TupleTools", "Unrolled"] -git-tree-sha1 = "dcd2f85ba9f2f7be1b1b31708db889d078b161f6" +deps = ["BayesBase", "Compat", "Distributions", "LinearAlgebra", "MacroTools", "MessagePassingRulesBase", "Random", "Rocket", "TinyHugeNumbers", "TupleTools", "UUIDs"] +git-tree-sha1 = "944722ce6bfb8b1cdfb05a123afe9fe397fbd725" uuid = "a194aa59-28ba-4574-a09c-4a745416d6e3" -version = "5.6.2" +version = "7.0.0" [deps.ReactiveMP.extensions] - ReactiveMPOptimisersExt = "Optimisers" - ReactiveMPProjectionExt = "ExponentialFamilyProjection" - ReactiveMPRequiresExt = "Requires" + ReactiveMPReactantExt = "Reactant" [deps.ReactiveMP.weakdeps] - ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" - Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" - Requires = "ae029012-a4dd-5104-9daa-d747884805df" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" [[deps.RecipesBase]] deps = ["PrecompileTools"] @@ -2225,50 +2160,83 @@ version = "1.3.1" [[deps.Rmath]] deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "4395a4cad612f95c1d08352f8c53811d6af3060b" +git-tree-sha1 = "5b3d50eb374cea306873b371d3f8d3915a018f0b" uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.8.1" +version = "0.9.0" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8" +git-tree-sha1 = "6d40b2fe70437b01397d2a4d5b020008da4e7019" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.5.1+0" +version = "0.5.2+0" [[deps.Rocket]] deps = ["DataStructures", "Sockets", "Unrolled"] -git-tree-sha1 = "fe7373bf6b935c4431002fd91fa581d5eb835d09" +git-tree-sha1 = "ad8f448adaaedd25803f12bcff8d59a8a1dd8bbb" uuid = "df971d30-c9d6-4b37-b8ff-e965b2cb3a40" -version = "1.8.3" +version = "1.11.0" +weakdeps = ["Observables"] + + [deps.Rocket.extensions] + RocketObservablesExt = "Observables" + +[[deps.Roots]] +deps = ["Accessors", "CommonSolve", "Printf"] +git-tree-sha1 = "e6ffa7bd4f8d0b8744d18f219304738d952f9a37" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "3.0.11" + + [deps.Roots.extensions] + RootsChainRulesCoreExt = "ChainRulesCore" + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + RootsUnitfulExt = "Unitful" + + [deps.Roots.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.RxInfer]] -deps = ["BayesBase", "DataStructures", "Dates", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "Optim", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "Static", "Statistics", "TupleTools", "UUIDs"] -git-tree-sha1 = "bcaf218d6b5329dc5e5be4299cbb5818c2c7bb19" +deps = ["AutoregressiveMessagePassingRules", "Base64", "BayesBase", "DataStructures", "Dates", "DeltaMessagePassingRules", "DiscreteTransitionMessagePassingRules", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GCVMessagePassingRules", "GaussianCouplingMessagePassingRules", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "PrecompileTools", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SoftDotMessagePassingRules", "SparseArrays", "StandardMessagePassingRules", "Static", "Statistics", "TupleTools", "UUIDs"] +git-tree-sha1 = "cbb0595f742056ccab20beba5cf2a1253294c6dd" uuid = "86711068-29c9-4ff7-b620-ae75d7495b3d" -version = "4.6.2" +version = "6.1.0" [deps.RxInfer.extensions] + OptimExt = "Optim" PrettyTablesExt = "PrettyTables" ProjectionExt = "ExponentialFamilyProjection" + ReactantExt = "Reactant" + TensorBoardLoggerExt = "TensorBoardLogger" [deps.RxInfer.weakdeps] ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLPublic]] -git-tree-sha1 = "ed647f161e8b3f2973f24979ec074e8d084f1bee" +deps = ["PrecompileTools"] +git-tree-sha1 = "74685afb51732a464fbce79a72708f7c4203ceb7" uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" -version = "1.0.0" +version = "1.3.0" [[deps.ScopedValues]] deps = ["HashArrayMappedTries", "Logging"] -git-tree-sha1 = "c3b2323466378a2ba15bea4b2f73b081e022f473" +git-tree-sha1 = "67a144433c4ce877ee6d1ada69a124d6b1ecf7be" uuid = "7e506255-f358-4e82-b7e4-beb19740aa63" -version = "1.5.0" +version = "1.6.2" [[deps.Scratch]] deps = ["Dates"] @@ -2286,12 +2254,6 @@ version = "1.4.8" uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" version = "1.11.0" -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "c5391c6ace3bc430ca630251d02ea9687169ca68" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.2" - [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" @@ -2310,19 +2272,25 @@ version = "1.2.0" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "be8eeac05ec97d379347584fa9fe2f5f76795bcb" +git-tree-sha1 = "7ddb0b49c109481b046972c0e4ab02b2127d6a75" uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" -version = "0.9.5" +version = "0.9.6" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" version = "1.11.0" +[[deps.SoftDotMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "8ccebfa9b93d9908178cc0e97c4f4a480708740d" +uuid = "fdfab25d-afbd-4817-865a-cd280c067f5e" +version = "1.0.0" + [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "64d974c2e6fdf07f8155b5b2ca2ffa9069b608d9" +git-tree-sha1 = "13cd91cc9be159e3f4d95b857fa2aa383b53772a" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.2.2" +version = "1.2.3" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -2331,9 +2299,9 @@ version = "1.12.0" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "f2685b435df2613e25fc10ad8c26dddb8640f547" +git-tree-sha1 = "429071b23f4c9a13fb6582f807cc2ef454082408" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.6.1" +version = "2.9.0" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2345,17 +2313,23 @@ git-tree-sha1 = "95af145932c2ed859b63329952ce8d633719f091" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.3" +[[deps.StandardMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "LogExpFunctions", "MatrixCorrectionTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "SpecialFunctions", "StatsFuns"] +git-tree-sha1 = "ca7e44b8d9c49483dfab3fc5e91346d032cb7d45" +uuid = "d166223a-7879-43b1-add3-64af0a178e9e" +version = "1.0.0" + [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" +git-tree-sha1 = "474a5283ad435618090122872eea6a8165ea6bcf" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" +version = "1.4.6" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "b8693004b385c842357406e3af647701fe783f98" +git-tree-sha1 = "8a8a52f887f38d44014e24ee46b8a7311c625f6d" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.15" +version = "1.9.24" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2363,15 +2337,15 @@ weakdeps = ["ChainRulesCore", "Statistics"] StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] -git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682" +git-tree-sha1 = "6ab403037779dae8c514bad259f32a447262455a" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.3" +version = "1.4.4" [[deps.Statistics]] deps = ["LinearAlgebra"] -git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" +git-tree-sha1 = "e2b53ce13a53367e96601081e33d34746b571bad" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.11.1" +version = "1.11.5" weakdeps = ["SparseArrays"] [deps.Statistics.extensions] @@ -2379,30 +2353,27 @@ weakdeps = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9d72a13a3f4dd3795a195ac5a44d7d6ff5f552ff" +git-tree-sha1 = "178ed29fd5b2a2cfc3bd31c13375ae925623ff36" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.1" +version = "1.8.0" [[deps.StatsBase]] -deps = ["AliasTables", "DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "2c962245732371acd51700dbb268af311bddd719" +deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "adb9da019510162e67a4493fc235c23203d8b09e" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.6" +version = "0.34.13" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "8e45cecc66f3b42633b8ce14d431e8e57a3e242e" +git-tree-sha1 = "0aa97471d55945556e8d2859568b8317cef98351" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.5.0" +version = "1.5.3" +weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" - [deps.StatsFuns.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" - [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] git-tree-sha1 = "88cf3587711d9ad0a55722d339a013c4c56c5bbc" @@ -2462,9 +2433,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" version = "1.11.0" [[deps.TinyHugeNumbers]] -git-tree-sha1 = "83c6abf376718345a85c071b249ef6692a8936d4" +git-tree-sha1 = "d5b24fd37550762d78280fb37c1800c3ea7e95cb" uuid = "783c9a47-75a3-44ac-a16b-f1ab7b3acf04" -version = "1.0.3" +version = "1.0.4" [[deps.TranscodingStreams]] git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" @@ -2476,44 +2447,22 @@ git-tree-sha1 = "372b90fe551c019541fafc6ff034199dc19c8436" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.12" -[[deps.Tullio]] -deps = ["DiffRules", "LinearAlgebra", "Requires"] -git-tree-sha1 = "972698b132b9df8791ae74aa547268e977b55f68" -uuid = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc" -version = "0.3.8" - - [deps.Tullio.extensions] - TullioCUDAExt = "CUDA" - TullioChainRulesCoreExt = "ChainRulesCore" - TullioFillArraysExt = "FillArrays" - TullioTrackerExt = "Tracker" - - [deps.Tullio.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.TupleTools]] -git-tree-sha1 = "41e43b9dc950775eac654b9f845c839cd2f1821e" +git-tree-sha1 = "a1c7e924f746f0ebc792425e7d4d2ea5b4470697" uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" -version = "1.6.0" +version = "1.6.1" [[deps.URIs]] -git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" +deps = ["Serialization"] +git-tree-sha1 = "0392e5e3c5327b90a487b0ff3e818c4aecd3660b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.6.1" +version = "1.7.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" version = "1.11.0" -[[deps.UnPack]] -git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" -uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" -version = "1.0.2" - [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" version = "1.11.0" @@ -2529,6 +2478,7 @@ deps = ["Dates", "LinearAlgebra", "Random"] git-tree-sha1 = "6258d453843c466d84c17a58732dda5deeb8d3af" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" version = "1.24.0" +weakdeps = ["ConstructionBase", "ForwardDiff", "InverseFunctions", "Printf"] [deps.Unitful.extensions] ConstructionBaseUnitfulExt = "ConstructionBase" @@ -2536,12 +2486,6 @@ version = "1.24.0" InverseFunctionsUnitfulExt = "InverseFunctions" PrintfExt = "Printf" - [deps.Unitful.weakdeps] - ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" - Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7" - [[deps.UnitfulLatexify]] deps = ["LaTeXStrings", "Latexify", "Unitful"] git-tree-sha1 = "af305cc62419f9bd61b6644d19170a4d258c7967" diff --git a/assignments/A2 - Tracking satellites.jl b/assignments/A2 - Tracking satellites.jl index b26ab60c..456e7e21 100644 --- a/assignments/A2 - Tracking satellites.jl +++ b/assignments/A2 - Tracking satellites.jl @@ -1,5 +1,5 @@ ### A Pluto.jl notebook ### -# v0.20.21 +# v1.0.3 using Markdown using InteractiveUtils @@ -376,10 +376,10 @@ StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" [compat] BmlipTeachingTools = "~1.3.1" -Distributions = "~0.25.122" +Distributions = "~0.25.132" JLD = "~0.13.5" Plots = "~1.40.20" -RxInfer = "~4.6.2" +RxInfer = "~6.1.0" StableRNGs = "~1.0.3" StatsPlots = "~0.15.8" """ @@ -388,24 +388,9 @@ StatsPlots = "~0.15.8" PLUTO_MANIFEST_TOML_CONTENTS = """ # This file is machine-generated - editing it directly is not advised -julia_version = "1.12.2" +julia_version = "1.12.7" manifest_format = "2.0" -project_hash = "32c705d9892cf7f17b419ab4af100a9c83b97866" - -[[deps.ADTypes]] -git-tree-sha1 = "27cecae79e5cc9935255f90c53bb831cc3c870d7" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.18.0" - - [deps.ADTypes.extensions] - ADTypesChainRulesCoreExt = "ChainRulesCore" - ADTypesConstructionBaseExt = "ConstructionBase" - ADTypesEnzymeCoreExt = "EnzymeCore" - - [deps.ADTypes.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" +project_hash = "7ef53f7f7cc99f81fd1ac7f8e931be35bbbf702b" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -424,11 +409,35 @@ git-tree-sha1 = "6e1d2a35f2f90a4bc7c2ed98079b2ba09c35b83a" uuid = "6e696c72-6542-2067-7265-42206c756150" version = "1.3.2" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "7063ad1083578215c7c4bf410368150abe8d5524" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.45" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" +deps = ["LinearAlgebra"] +git-tree-sha1 = "dee8388a9bec89c8713ad176f96960ae2f98598a" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.4.0" +version = "4.7.4" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -463,45 +472,11 @@ git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.1+1" -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "d2cd034553ee6ca084edaaf8ed6c9d50fd01555d" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.21.0" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] - ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" - ArrayInterfaceChainRulesExt = "ChainRules" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceMetalExt = "Metal" - ArrayInterfaceReverseDiffExt = "ReverseDiff" - ArrayInterfaceSparseArraysExt = "SparseArrays" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" - ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "355ab2d61069927d4247cd69ad0e1f140b31e30d" +git-tree-sha1 = "b4a2d2dfcaedf8f0cb93a970c4ccba6f632f14cc" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.12.0" +version = "1.15.1" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -511,6 +486,12 @@ weakdeps = ["SparseArrays"] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" version = "1.11.0" +[[deps.AutoregressiveMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "4c9f3f4edd4580e385535bce39a6a39f8f1a6aa9" +uuid = "bbb8872a-15f9-43f6-924d-37f12d04ed53" +version = "1.0.0" + [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" @@ -523,18 +504,18 @@ version = "1.11.0" [[deps.BayesBase]] deps = ["Distributions", "DomainSets", "LinearAlgebra", "Random", "SpecialFunctions", "StaticArrays", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "5b723bf6b1081cab4d263e425be097224e0f434f" +git-tree-sha1 = "cadec5ad37b53e1198f36524b30297fc0df98aae" uuid = "b4ee3484-f114-42fe-b91c-797d54a0c67e" -version = "1.5.8" +version = "1.5.12" weakdeps = ["FastCholesky"] [deps.BayesBase.extensions] FastCholeskyExt = "FastCholesky" [[deps.BitFlags]] -git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" +git-tree-sha1 = "bbe1079eecf9c9fbb52765193ad2bae27ae09bc8" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.9" +version = "0.1.10" [[deps.BitSetTuples]] deps = ["TupleTools"] @@ -544,9 +525,9 @@ version = "1.1.5" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "79e651aa489a7879107d66e3d1948e9aa1b4055e" +git-tree-sha1 = "876d4c4b941cc8b079da79c88d9c2dee52b9dd13" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "1.7.2" +version = "1.10.3" [deps.BlockArrays.extensions] BlockArraysAdaptExt = "Adapt" @@ -597,15 +578,15 @@ weakdeps = ["SparseArrays"] ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChunkCodecCore]] -git-tree-sha1 = "51f4c10ee01bda57371e977931de39ee0f0cdb3e" +git-tree-sha1 = "3496e2b359c27793d12bec54ec94be7983a6ceb2" uuid = "0b6fb165-00bc-4d37-ab8b-79f91016dbe1" -version = "1.0.0" +version = "1.0.2" [[deps.ChunkCodecLibZlib]] deps = ["ChunkCodecCore", "Zlib_jll"] -git-tree-sha1 = "cee8104904c53d39eb94fd06cbe60cb5acde7177" +git-tree-sha1 = "d4101e848e8d3f585d61d244c2fe0c80a70e6b3b" uuid = "4c0bbee4-addc-4d73-81a0-b6caacae83c8" -version = "1.0.0" +version = "1.1.0" [[deps.ChunkCodecLibZstd]] deps = ["ChunkCodecCore", "Zstd_jll"] @@ -621,9 +602,9 @@ version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" +git-tree-sha1 = "970758a3d591a2a5c2a907c53f2e2f8c1b1d3537" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.8" +version = "0.7.9" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -658,9 +639,15 @@ uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "8010b6bb3388abe68d95743dcbea77650bb2eddf" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.3" +version = "1.1.0" + +[[deps.CommonSolve]] +deps = ["PrecompileTools"] +git-tree-sha1 = "6c389fa857f6ca5a95474b52a52023fd77f24cb7" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.14" [[deps.CommonSubexpressions]] deps = ["MacroTools"] @@ -669,9 +656,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" [[deps.CommonWorldInvalidations]] -git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" +deps = ["PrecompileTools"] +git-tree-sha1 = "7c4ea0adfb7238bf4678aa36325863fab6163f6f" uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" -version = "1.0.0" +version = "1.2.2" [[deps.Compat]] deps = ["TOML", "UUIDs"] @@ -686,18 +674,27 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.3.0+1" +version = "1.3.1+2" [[deps.CompositeTypes]] git-tree-sha1 = "bce26c3dab336582805503bed209faab1c279768" uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657" version = "0.1.4" +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "d9d26935a0bcffc87d2613ce14c527c99fc543fd" +git-tree-sha1 = "d5e5fa1f0d6ca517edbbcd734efa93c6639405b0" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.5.0" +version = "2.7.1" [[deps.ConstructionBase]] git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" @@ -721,10 +718,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "4e1fe97fdaed23e9dc21d4d664bea76b65fc50a0" +deps = ["OrderedCollections"] +git-tree-sha1 = "b0bc6d2cad1fed8b7fd59a1551a991cb3d2809e6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.22" +version = "0.19.6" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -748,11 +745,23 @@ git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" +[[deps.DeltaMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase"] +git-tree-sha1 = "eb4eafdd796377c6dfc1e842363291c5db8525c6" +uuid = "ea5de7a7-24c9-4a61-90ce-ef77c844b13f" +version = "1.0.0" + + [deps.DeltaMessagePassingRules.extensions] + DeltaMessagePassingRulesProjectionExt = "ExponentialFamilyProjection" + + [deps.DeltaMessagePassingRules.weakdeps] + ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + [[deps.Dictionaries]] deps = ["Indexing", "Random", "Serialization"] -git-tree-sha1 = "a86af9c4c4f33e16a2b2ff43c2113b2f390081fa" +git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" -version = "0.4.5" +version = "0.4.6" [[deps.DiffResults]] deps = ["StaticArraysCore"] @@ -762,59 +771,15 @@ version = "1.1.0" [[deps.DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +git-tree-sha1 = "79a2aca180a85c690c58a020d47b426954b590f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" - -[[deps.DifferentiationInterface]] -deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "529bebbc74b36a4cfea09dd2aecb1288cd713a6d" -uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.9" +version = "1.16.0" - [deps.DifferentiationInterface.extensions] - DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" - DifferentiationInterfaceDiffractorExt = "Diffractor" - DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] - DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" - DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" - DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" - DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" - DifferentiationInterfaceGTPSAExt = "GTPSA" - DifferentiationInterfaceMooncakeExt = "Mooncake" - DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] - DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] - DifferentiationInterfaceSparseArraysExt = "SparseArrays" - DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" - DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" - DifferentiationInterfaceStaticArraysExt = "StaticArrays" - DifferentiationInterfaceSymbolicsExt = "Symbolics" - DifferentiationInterfaceTrackerExt = "Tracker" - DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] - - [deps.DifferentiationInterface.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" - Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" - FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" - Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" - SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.DiscreteTransitionMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase"] +git-tree-sha1 = "1bf03a659aa103303f73a2ef40d74c206b02305a" +uuid = "039b7295-e235-4523-a933-c224bd9a7e58" +version = "1.0.0" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] @@ -833,19 +798,21 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" version = "1.11.0" [[deps.Distributions]] -deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "3bc002af51045ca3b47d2e1787d6ce02e68b943a" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "Roots", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2ddbc341251ed713d39e503b504593a5d6789551" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.122" +version = "0.25.132" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsSparseConnectivityTracerExt = "SparseConnectivityTracer" DistributionsTestExt = "Test" [deps.Distributions.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.DocStringExtensions]] @@ -853,36 +820,27 @@ git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" -[[deps.DomainIntegrals]] -deps = ["CompositeTypes", "DomainSets", "FastGaussQuadrature", "GaussQuadrature", "HCubature", "IntervalSets", "LinearAlgebra", "QuadGK", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "934bf806ef2948114243f25e84a3ddf775d0f1a6" -uuid = "cc6bae93-f070-4015-88fd-838f9505a86c" -version = "0.5.2" - [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "c249d86e97a7e8398ce2068dce4c078a1c3464de" +deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "6ac879a64381881dc24f96a15e13e80204439906" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.16" +version = "0.8.3" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" DomainSetsRandomExt = "Random" + DomainSetsRecipesBaseExt = "RecipesBase" [deps.DomainSets.weakdeps] Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.7.0" -[[deps.EnumX]] -git-tree-sha1 = "bddad79635af6aec424f53ed8aad5d7555dc6f00" -uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.5" - [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "8a4be429317c42cfae6a7fc03c31bad1970c310d" @@ -891,9 +849,9 @@ version = "0.0.20230411+1" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "d36f682e590a83d63d1c7dbd287573764682d12a" +git-tree-sha1 = "4e468f521e1f9f86891cb07186de5df90360a666" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.11" +version = "0.1.12" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -903,9 +861,9 @@ version = "2.7.3+0" [[deps.ExponentialFamily]] deps = ["BayesBase", "BlockArrays", "Distributions", "DomainSets", "FastCholesky", "FillArrays", "ForwardDiff", "HCubature", "HypergeometricFunctions", "IntervalSets", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "PositiveFactorizations", "Random", "SparseArrays", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "8351e116e111c97ad57718851da00ae5a5f92e0c" +git-tree-sha1 = "22a03af5898b5f988efdd835f40af831164f7d4b" uuid = "62312e5e-252a-4322-ace9-a5f4bf9b357b" -version = "2.1.1" +version = "2.7.1" [[deps.FFMPEG]] deps = ["FFMPEG_jll"] @@ -933,25 +891,29 @@ version = "3.3.11+0" [[deps.FastCholesky]] deps = ["LinearAlgebra", "PositiveFactorizations"] -git-tree-sha1 = "1c0a81e006e40e9fcbd5f6f6cb42ac2700f86889" +git-tree-sha1 = "02f0dc1afe2c0bb73a0881727a4bf771a19ec190" uuid = "2d5283b6-8564-42b6-bb00-83ed8e915756" -version = "1.4.3" -weakdeps = ["StaticArraysCore"] +version = "1.5.0" [deps.FastCholesky.extensions] + ReactantExt = "Reactant" StaticArraysCoreExt = "StaticArraysCore" + [deps.FastCholesky.weakdeps] + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "0044e9f5e49a57e88205e8f30ab73928b05fe5b6" +git-tree-sha1 = "4916117dd032ec5959b7633aedbbac408ca5ddeb" uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "1.1.0" +version = "1.3.0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "d60eb76f37d7e5a40cc2e7c36974d864b82dc802" +git-tree-sha1 = "6621fef488e496356c9c9625d0562c12a6070819" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.17.1" +version = "1.20.0" weakdeps = ["HTTP"] [deps.FileIO.extensions] @@ -963,40 +925,17 @@ version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "173e4d8f14230a7523ae11b9a3fa9edb3e0efd78" +git-tree-sha1 = "417289ac840d201005d9ed16789a46defccbe36d" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.14.0" -weakdeps = ["PDMats", "SparseArrays", "Statistics"] +version = "1.18.1" +weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [deps.FillArrays.extensions] FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" + FillArraysStaticArraysExt = "StaticArrays" FillArraysStatisticsExt = "Statistics" -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" - FiniteDiffSparseArraysExt = "SparseArrays" - FiniteDiffStaticArraysExt = "StaticArrays" - - [deps.FiniteDiff.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - -[[deps.FixedArguments]] -deps = ["TupleTools"] -git-tree-sha1 = "befa1ad59c77643dec6fc20d71fd6f5c3afcdadd" -uuid = "4130a065-6d82-41fe-881e-7a5c65156f7d" -version = "0.1.1" - [[deps.FixedPointNumbers]] deps = ["Statistics"] git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" @@ -1016,9 +955,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "ba6ce081425d0afb2bedd00d9884464f764a9225" +git-tree-sha1 = "3b0f72e2ffef1a139ac450725c9ecd01c0a3c050" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.2.2" +version = "1.4.6" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -1036,10 +975,17 @@ git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.17+0" -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" -version = "1.11.0" +[[deps.FunctionMaps]] +deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" +uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" +version = "0.1.2" + +[[deps.GCVMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "StandardMessagePassingRules", "StatsFuns"] +git-tree-sha1 = "b9d896eff3b7dd887b119675f96d210abc31f2a9" +uuid = "2bb838d1-ae36-49a2-8c64-82a0acccfa93" +version = "1.0.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] @@ -1059,11 +1005,16 @@ git-tree-sha1 = "27299071cc29e409488ada41ec7643e0ab19091f" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" version = "0.73.17+0" -[[deps.GaussQuadrature]] -deps = ["SpecialFunctions"] -git-tree-sha1 = "eb6f1f48aa994f3018cbd029a17863c6535a266d" -uuid = "d54b0c1a-921d-58e0-8e36-89d8069c0969" -version = "0.5.8" +[[deps.Gamma]] +git-tree-sha1 = "86f86b6168a016ed88e4ae4e64577b98c3b59e8e" +uuid = "a0844989-3bd2-4988-8bea-c9407ab0941b" +version = "1.1.0" + +[[deps.GaussianCouplingMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesBase"] +git-tree-sha1 = "73948ad868fa022db11c678aaf1415ddb762f219" +uuid = "a57ce80c-d854-4eb3-973d-f0d0550df039" +version = "1.0.0" [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] @@ -1085,9 +1036,9 @@ version = "2.86.0+0" [[deps.GraphPPL]] deps = ["BitSetTuples", "DataStructures", "Dictionaries", "MacroTools", "MetaGraphsNext", "NamedTupleTools", "Static", "StaticArrays", "TupleTools", "Unrolled"] -git-tree-sha1 = "db4aece54ddddaa9e8d2880eb7cfc6f29bd1a650" +git-tree-sha1 = "2d10297851848d1b6dc1dc335e549068e7890477" uuid = "b3f8163a-e979-4e85-b43e-1f63d8c8b42c" -version = "4.6.5" +version = "4.9.0" [deps.GraphPPL.extensions] GraphPPLDistributionsExt = "Distributions" @@ -1107,10 +1058,14 @@ uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" version = "1.3.15+0" [[deps.Graphs]] -deps = ["ArnoldiMethod", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "7a98c6502f4632dbe9fb1973a4244eaa3324e84d" +deps = ["ArnoldiMethod", "DataStructures", "Inflate", "LinearAlgebra", "Random", "SimpleTraits", "SparseArrays", "Statistics"] +git-tree-sha1 = "dbb2b976f605b220dfe139d6db9f3859680da09e" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.13.1" +version = "1.15.0" +weakdeps = ["Distributed", "SharedArrays"] + + [deps.Graphs.extensions] + GraphsSharedArraysExt = "SharedArrays" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -1125,9 +1080,9 @@ version = "0.1.2" [[deps.HCubature]] deps = ["Combinatorics", "DataStructures", "LinearAlgebra", "QuadGK", "StaticArrays"] -git-tree-sha1 = "19ef9f0cb324eed957b7fe7257ac84e8ed8a48ec" +git-tree-sha1 = "8ee627fb73ecba0b5254158b04d4745611b404a1" uuid = "19dc6840-f33b-545b-b366-655c7e3ffd49" -version = "1.7.0" +version = "1.8.0" [[deps.HDF5]] deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] @@ -1149,9 +1104,9 @@ version = "1.14.6+0" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e6fe50ae7f23d171f44e311c2960294aaa0beb5" +git-tree-sha1 = "51059d23c8bb67911a2e6fd5130229113735fc7e" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.19" +version = "1.11.0" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] @@ -1171,10 +1126,10 @@ uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" version = "2.12.2+0" [[deps.HypergeometricFunctions]] -deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" +deps = ["Gamma", "LinearAlgebra"] +git-tree-sha1 = "31bb6c92405c084617facc1d7ed9eb6c402d061e" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.28" +version = "0.3.30" [[deps.Hyperscript]] deps = ["Test"] @@ -1232,20 +1187,36 @@ weakdeps = ["ForwardDiff", "Unitful"] InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -git-tree-sha1 = "5fbb102dcb8b1a858111ae81d56682376130517d" +git-tree-sha1 = "0db6aea5b64caa1c47e9fdd27394f0296f05e8bf" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.11" -weakdeps = ["Random", "RecipesBase", "Statistics"] +version = "0.7.15" [deps.IntervalSets.extensions] + IntervalSetsMakieExt = "Makie" IntervalSetsRandomExt = "Random" IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" + [deps.IntervalSets.weakdeps] + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + +[[deps.InverseFunctions]] +git-tree-sha1 = "5cc6ad3e2bfc75a11eed92632ee341d37f4a4536" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.18" +weakdeps = ["Dates", "Test"] + + [deps.InverseFunctions.extensions] + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" + [[deps.IrrationalConstants]] -git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" +git-tree-sha1 = "d22e8bdb3f03c300a103ff23c0dd5a654c6701de" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.6" +version = "0.2.7" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -1259,15 +1230,17 @@ uuid = "4138dd39-2aa7-5051-a626-17a0bb65d9c8" version = "0.13.5" [[deps.JLD2]] -deps = ["ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] -git-tree-sha1 = "da2e9b4d1abbebdcca0aa68afa0aa272102baad7" +deps = ["ChunkCodecCore", "ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] +git-tree-sha1 = "9ce2e7c49ae4a7035b7d60db3a553b1f6c16875d" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.6.2" -weakdeps = ["UnPack"] +version = "0.6.7" [deps.JLD2.extensions] UnPackExt = "UnPack" + [deps.JLD2.weakdeps] + UnPack = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" + [[deps.JLFzf]] deps = ["REPL", "Random", "fzf_jll"] git-tree-sha1 = "82f7acdc599b65e0f8ccd270ffa1467c21cb647b" @@ -1276,9 +1249,9 @@ version = "0.1.11" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "0533e564aae234aff59ab625543145446d8b6ec2" +git-tree-sha1 = "7204148362dafe5fe6a273f855b8ccbe4df8173e" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.7.1" +version = "1.8.0" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] @@ -1350,24 +1323,6 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "79ee64f6ba0a5a49930f51c86f60d7526b5e12c8" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.8.0" - - [deps.LazyArrays.extensions] - LazyArraysBandedMatricesExt = "BandedMatrices" - LazyArraysBlockArraysExt = "BlockArrays" - LazyArraysBlockBandedMatricesExt = "BlockBandedMatrices" - LazyArraysStaticArraysExt = "StaticArrays" - - [deps.LazyArrays.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -1438,12 +1393,6 @@ git-tree-sha1 = "2a7a12fc0a4e7fb773450d17975322aa77142106" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" version = "2.41.2+0" -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "4adee99b7262ad2a1a4bbbc59d993d24e55ea96f" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.4.0" - [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" @@ -1528,26 +1477,38 @@ version = "1.2.0" [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] -git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +git-tree-sha1 = "8785729fa736197687541f7053f6d8ab7fc44f92" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.9" +version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "3cce3511ca2c6f87b19c34ffc623417ed2798cbd" +git-tree-sha1 = "ff69a2b1330bcb730b9ac1ab7dd680176f5896b8" uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.10+0" +version = "2.28.1010+0" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" version = "0.3.2" +[[deps.MessagePassingRulesApproximations]] +deps = ["Compat", "FastCholesky", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra"] +git-tree-sha1 = "0904181cd2a25ed85da53a3426af17f0fb7bb193" +uuid = "36043009-14b3-4068-9fb9-f1e492c92d7d" +version = "1.0.0" + +[[deps.MessagePassingRulesBase]] +deps = ["BayesBase", "Compat", "FastCholesky", "IrrationalConstants", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "386ffd59dc3b21d3d36542c41f7b0326c821813f" +uuid = "4a5b64c7-30c9-4471-82f2-bbe8464b157d" +version = "1.1.2" + [[deps.MetaGraphsNext]] deps = ["Graphs", "JLD2", "SimpleTraits"] -git-tree-sha1 = "c3f7e597f1cf5fe04e68e7907af47f055cad211c" +git-tree-sha1 = "1983a06112db00c54e171f5cff8788c8efbdae85" uuid = "fa8bd995-216d-47f1-8a91-f3b68fbeb377" -version = "0.7.4" +version = "0.7.5" [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1567,7 +1528,7 @@ version = "1.11.0" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.5.20" +version = "2025.11.4" [[deps.MultivariateStats]] deps = ["Arpack", "Distributions", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1575,17 +1536,11 @@ git-tree-sha1 = "816620e3aac93e5b5359e4fdaf23ca4525b00ddf" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" version = "0.10.3" -[[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "25a6638571a902ecfb1ae2a18fc1575f86b1d4df" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.10.0" - [[deps.NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "9b8215b1ee9e78a293f99797cd31375471b2bcae" +git-tree-sha1 = "676c0f1c1c34224d6869675047a54b42fdc7b8c5" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.1.3" +version = "1.1.5" [[deps.NamedTupleTools]] git-tree-sha1 = "90914795fc59df44120fe3fff6742bb0d7adb1d0" @@ -1639,15 +1594,15 @@ uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" version = "5.0.8+0" [[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "f1a7e086c677df53e064e0fdd2c9d0b0833e3f6e" +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "5caab1056e0734b87f62ae3a3b520d47d3e994e8" uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.5.0" +version = "1.7.0" [[deps.OpenSSL_jll]] deps = ["Artifacts", "Libdl"] uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.4+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1655,18 +1610,6 @@ git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.6+0" -[[deps.Optim]] -deps = ["Compat", "EnumX", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "61942645c38dd2b5b78e2082c9b51ab315315d10" -uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.13.2" - - [deps.Optim.extensions] - OptimMOIExt = "MathOptInterface" - - [deps.Optim.weakdeps] - MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" - [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "c392fc5dd032381919e3b22dd32d6443760ce7ea" @@ -1674,9 +1617,9 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.5.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "05868e21324cede2207c6f0f466b4bfef6d5e7ee" +git-tree-sha1 = "94ba93778373a53bfd5a0caaf7d809c445292ff4" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.8.1" +version = "1.8.2" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1685,9 +1628,9 @@ version = "10.44.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "d922b4d80d1e12c658da7785e754f4796cc1d60d" +git-tree-sha1 = "123266c25174ef6c8d4718920abc206452cf8de6" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.36" +version = "0.11.41" weakdeps = ["StatsBase"] [deps.PDMats.extensions] @@ -1699,17 +1642,11 @@ git-tree-sha1 = "1f7f9bbd5f7a2e5a9f7d96e51c9754454ea7f60b" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" version = "1.56.4+0" -[[deps.Parameters]] -deps = ["OrderedCollections", "UnPack"] -git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" -uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" -version = "0.12.3" - [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "ba0dc8a8a67cacac4842631f960c046e4e563675" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.8" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1720,7 +1657,7 @@ version = "0.44.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.12.0" +version = "1.12.1" weakdeps = ["REPL"] [deps.Pkg.extensions] @@ -1770,12 +1707,6 @@ git-tree-sha1 = "3faff84e6f97a7f18e0dd24373daa229fd358db5" uuid = "7f904dfe-b85e-4ff6-b463-dae2292396a8" version = "0.7.73" -[[deps.PolyaGammaHybridSamplers]] -deps = ["Distributions", "Random", "SpecialFunctions", "StatsFuns"] -git-tree-sha1 = "9f6139650ff57f9d8528cd809ebc604c7e9738b1" -uuid = "c636ee4f-4591-4d8c-9fae-2dea21daa433" -version = "1.2.6" - [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" @@ -1784,15 +1715,15 @@ version = "0.2.4" [[deps.PrecompileTools]] deps = ["Preferences"] -git-tree-sha1 = "07a921781cab75691315adc645096ed5e370cb77" +git-tree-sha1 = "edbeefc7a4889f528644251bdb5fc9ab5348bc2c" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.3.3" +version = "1.3.4" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "0f27480397253da18fe2c12a4ba4eb9eb208bf3d" +git-tree-sha1 = "aef1987d90dcc2e2cbd919ad10b2d25bcce4f418" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.5.0" +version = "1.6.1" [[deps.Printf]] deps = ["Unicode"] @@ -1800,15 +1731,23 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" version = "1.11.0" [[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "fbb92c6c56b34e1a2c4c36058f68f332bec840e7" +deps = ["Printf"] +git-tree-sha1 = "ce5ba3edfdeba107a721748d53b5f5887f415853" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.11.0" +version = "1.13.0" + + [deps.ProgressMeter.extensions] + ProgressMeterDistributedExt = "Distributed" + ProgressMeterIJuliaExt = "IJulia" + + [deps.ProgressMeter.weakdeps] + Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" [[deps.PtrArrays]] -git-tree-sha1 = "1d36ef11a9aaf1e8b74dacc6a731dd1de8fd493d" +git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" -version = "1.3.0" +version = "1.4.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] @@ -1836,9 +1775,9 @@ version = "6.8.2+2" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -1867,20 +1806,16 @@ weakdeps = ["FixedPointNumbers"] RatiosFixedPointNumbersExt = "FixedPointNumbers" [[deps.ReactiveMP]] -deps = ["BayesBase", "DataStructures", "DiffResults", "Distributions", "DomainIntegrals", "DomainSets", "ExponentialFamily", "FastCholesky", "FastGaussQuadrature", "FixedArguments", "ForwardDiff", "HCubature", "LazyArrays", "LinearAlgebra", "MacroTools", "MatrixCorrectionTools", "Optim", "PolyaGammaHybridSamplers", "PositiveFactorizations", "Random", "Rocket", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "TinyHugeNumbers", "Tullio", "TupleTools", "Unrolled"] -git-tree-sha1 = "dcd2f85ba9f2f7be1b1b31708db889d078b161f6" +deps = ["BayesBase", "Compat", "Distributions", "LinearAlgebra", "MacroTools", "MessagePassingRulesBase", "Random", "Rocket", "TinyHugeNumbers", "TupleTools", "UUIDs"] +git-tree-sha1 = "944722ce6bfb8b1cdfb05a123afe9fe397fbd725" uuid = "a194aa59-28ba-4574-a09c-4a745416d6e3" -version = "5.6.2" +version = "7.0.0" [deps.ReactiveMP.extensions] - ReactiveMPOptimisersExt = "Optimisers" - ReactiveMPProjectionExt = "ExponentialFamilyProjection" - ReactiveMPRequiresExt = "Requires" + ReactiveMPReactantExt = "Reactant" [deps.ReactiveMP.weakdeps] - ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" - Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" - Requires = "ae029012-a4dd-5104-9daa-d747884805df" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" [[deps.RecipesBase]] deps = ["PrecompileTools"] @@ -1913,50 +1848,83 @@ version = "1.3.1" [[deps.Rmath]] deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "4395a4cad612f95c1d08352f8c53811d6af3060b" +git-tree-sha1 = "5b3d50eb374cea306873b371d3f8d3915a018f0b" uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.8.1" +version = "0.9.0" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8" +git-tree-sha1 = "6d40b2fe70437b01397d2a4d5b020008da4e7019" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.5.1+0" +version = "0.5.2+0" [[deps.Rocket]] deps = ["DataStructures", "Sockets", "Unrolled"] -git-tree-sha1 = "fe7373bf6b935c4431002fd91fa581d5eb835d09" +git-tree-sha1 = "ad8f448adaaedd25803f12bcff8d59a8a1dd8bbb" uuid = "df971d30-c9d6-4b37-b8ff-e965b2cb3a40" -version = "1.8.3" +version = "1.11.0" +weakdeps = ["Observables"] + + [deps.Rocket.extensions] + RocketObservablesExt = "Observables" + +[[deps.Roots]] +deps = ["Accessors", "CommonSolve", "Printf"] +git-tree-sha1 = "e6ffa7bd4f8d0b8744d18f219304738d952f9a37" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "3.0.11" + + [deps.Roots.extensions] + RootsChainRulesCoreExt = "ChainRulesCore" + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + RootsUnitfulExt = "Unitful" + + [deps.Roots.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.RxInfer]] -deps = ["BayesBase", "DataStructures", "Dates", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "Optim", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "Static", "Statistics", "TupleTools", "UUIDs"] -git-tree-sha1 = "bcaf218d6b5329dc5e5be4299cbb5818c2c7bb19" +deps = ["AutoregressiveMessagePassingRules", "Base64", "BayesBase", "DataStructures", "Dates", "DeltaMessagePassingRules", "DiscreteTransitionMessagePassingRules", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GCVMessagePassingRules", "GaussianCouplingMessagePassingRules", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "PrecompileTools", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SoftDotMessagePassingRules", "SparseArrays", "StandardMessagePassingRules", "Static", "Statistics", "TupleTools", "UUIDs"] +git-tree-sha1 = "cbb0595f742056ccab20beba5cf2a1253294c6dd" uuid = "86711068-29c9-4ff7-b620-ae75d7495b3d" -version = "4.6.2" +version = "6.1.0" [deps.RxInfer.extensions] + OptimExt = "Optim" PrettyTablesExt = "PrettyTables" ProjectionExt = "ExponentialFamilyProjection" + ReactantExt = "Reactant" + TensorBoardLoggerExt = "TensorBoardLogger" [deps.RxInfer.weakdeps] ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLPublic]] -git-tree-sha1 = "ed647f161e8b3f2973f24979ec074e8d084f1bee" +deps = ["PrecompileTools"] +git-tree-sha1 = "74685afb51732a464fbce79a72708f7c4203ceb7" uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" -version = "1.0.0" +version = "1.3.0" [[deps.ScopedValues]] deps = ["HashArrayMappedTries", "Logging"] -git-tree-sha1 = "c3b2323466378a2ba15bea4b2f73b081e022f473" +git-tree-sha1 = "67a144433c4ce877ee6d1ada69a124d6b1ecf7be" uuid = "7e506255-f358-4e82-b7e4-beb19740aa63" -version = "1.5.0" +version = "1.6.2" [[deps.Scratch]] deps = ["Dates"] @@ -1974,12 +1942,6 @@ version = "1.4.8" uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" version = "1.11.0" -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "c5391c6ace3bc430ca630251d02ea9687169ca68" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.2" - [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" @@ -1998,19 +1960,25 @@ version = "1.2.0" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "be8eeac05ec97d379347584fa9fe2f5f76795bcb" +git-tree-sha1 = "7ddb0b49c109481b046972c0e4ab02b2127d6a75" uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" -version = "0.9.5" +version = "0.9.6" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" version = "1.11.0" +[[deps.SoftDotMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "8ccebfa9b93d9908178cc0e97c4f4a480708740d" +uuid = "fdfab25d-afbd-4817-865a-cd280c067f5e" +version = "1.0.0" + [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "64d974c2e6fdf07f8155b5b2ca2ffa9069b608d9" +git-tree-sha1 = "13cd91cc9be159e3f4d95b857fa2aa383b53772a" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.2.2" +version = "1.2.3" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] @@ -2019,9 +1987,9 @@ version = "1.12.0" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "f2685b435df2613e25fc10ad8c26dddb8640f547" +git-tree-sha1 = "429071b23f4c9a13fb6582f807cc2ef454082408" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.6.1" +version = "2.9.0" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2033,17 +2001,23 @@ git-tree-sha1 = "95af145932c2ed859b63329952ce8d633719f091" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.3" +[[deps.StandardMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "LogExpFunctions", "MatrixCorrectionTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "SpecialFunctions", "StatsFuns"] +git-tree-sha1 = "ca7e44b8d9c49483dfab3fc5e91346d032cb7d45" +uuid = "d166223a-7879-43b1-add3-64af0a178e9e" +version = "1.0.0" + [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" +git-tree-sha1 = "474a5283ad435618090122872eea6a8165ea6bcf" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" +version = "1.4.6" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "b8693004b385c842357406e3af647701fe783f98" +git-tree-sha1 = "8a8a52f887f38d44014e24ee46b8a7311c625f6d" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.15" +version = "1.9.24" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2051,15 +2025,15 @@ weakdeps = ["ChainRulesCore", "Statistics"] StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] -git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682" +git-tree-sha1 = "6ab403037779dae8c514bad259f32a447262455a" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.3" +version = "1.4.4" [[deps.Statistics]] deps = ["LinearAlgebra"] -git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" +git-tree-sha1 = "e2b53ce13a53367e96601081e33d34746b571bad" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.11.1" +version = "1.11.5" weakdeps = ["SparseArrays"] [deps.Statistics.extensions] @@ -2067,30 +2041,27 @@ weakdeps = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9d72a13a3f4dd3795a195ac5a44d7d6ff5f552ff" +git-tree-sha1 = "178ed29fd5b2a2cfc3bd31c13375ae925623ff36" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.1" +version = "1.8.0" [[deps.StatsBase]] -deps = ["AliasTables", "DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "2c962245732371acd51700dbb268af311bddd719" +deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "adb9da019510162e67a4493fc235c23203d8b09e" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.6" +version = "0.34.13" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "8e45cecc66f3b42633b8ce14d431e8e57a3e242e" +git-tree-sha1 = "0aa97471d55945556e8d2859568b8317cef98351" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.5.0" +version = "1.5.3" +weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" - [deps.StatsFuns.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" - [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] git-tree-sha1 = "88cf3587711d9ad0a55722d339a013c4c56c5bbc" @@ -2150,9 +2121,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" version = "1.11.0" [[deps.TinyHugeNumbers]] -git-tree-sha1 = "83c6abf376718345a85c071b249ef6692a8936d4" +git-tree-sha1 = "d5b24fd37550762d78280fb37c1800c3ea7e95cb" uuid = "783c9a47-75a3-44ac-a16b-f1ab7b3acf04" -version = "1.0.3" +version = "1.0.4" [[deps.TranscodingStreams]] git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" @@ -2164,44 +2135,22 @@ git-tree-sha1 = "372b90fe551c019541fafc6ff034199dc19c8436" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.12" -[[deps.Tullio]] -deps = ["DiffRules", "LinearAlgebra", "Requires"] -git-tree-sha1 = "972698b132b9df8791ae74aa547268e977b55f68" -uuid = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc" -version = "0.3.8" - - [deps.Tullio.extensions] - TullioCUDAExt = "CUDA" - TullioChainRulesCoreExt = "ChainRulesCore" - TullioFillArraysExt = "FillArrays" - TullioTrackerExt = "Tracker" - - [deps.Tullio.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.TupleTools]] -git-tree-sha1 = "41e43b9dc950775eac654b9f845c839cd2f1821e" +git-tree-sha1 = "a1c7e924f746f0ebc792425e7d4d2ea5b4470697" uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" -version = "1.6.0" +version = "1.6.1" [[deps.URIs]] -git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" +deps = ["Serialization"] +git-tree-sha1 = "0392e5e3c5327b90a487b0ff3e818c4aecd3660b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.6.1" +version = "1.7.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" version = "1.11.0" -[[deps.UnPack]] -git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" -uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" -version = "1.0.2" - [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" version = "1.11.0" @@ -2217,6 +2166,7 @@ deps = ["Dates", "LinearAlgebra", "Random"] git-tree-sha1 = "6258d453843c466d84c17a58732dda5deeb8d3af" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" version = "1.24.0" +weakdeps = ["ConstructionBase", "ForwardDiff", "InverseFunctions", "Printf"] [deps.Unitful.extensions] ConstructionBaseUnitfulExt = "ConstructionBase" @@ -2224,12 +2174,6 @@ version = "1.24.0" InverseFunctionsUnitfulExt = "InverseFunctions" PrintfExt = "Printf" - [deps.Unitful.weakdeps] - ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" - Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7" - [[deps.UnitfulLatexify]] deps = ["LaTeXStrings", "Latexify", "Unitful"] git-tree-sha1 = "af305cc62419f9bd61b6644d19170a4d258c7967" diff --git a/assignments/Resit - robot localization.jl b/assignments/Resit - robot localization.jl index 6b2a2b03..f4ce932a 100644 --- a/assignments/Resit - robot localization.jl +++ b/assignments/Resit - robot localization.jl @@ -1,5 +1,5 @@ ### A Pluto.jl notebook ### -# v0.20.24 +# v1.0.3 using Markdown using InteractiveUtils @@ -437,9 +437,9 @@ StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" [compat] BmlipTeachingTools = "~1.3.1" -Distributions = "~0.25.123" -Plots = "~1.41.6" -RxInfer = "~4.7.1" +Distributions = "~0.25.132" +Plots = "~1.41.7" +RxInfer = "~6.1.0" StableRNGs = "~1.0.4" StatsPlots = "~0.15.8" """ @@ -448,24 +448,9 @@ StatsPlots = "~0.15.8" PLUTO_MANIFEST_TOML_CONTENTS = """ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.10" +julia_version = "1.12.7" manifest_format = "2.0" -project_hash = "40694f44a6477517d3235de30fbf7fa30a4c4db9" - -[[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" - - [deps.ADTypes.extensions] - ADTypesChainRulesCoreExt = "ChainRulesCore" - ADTypesConstructionBaseExt = "ConstructionBase" - ADTypesEnzymeCoreExt = "EnzymeCore" - - [deps.ADTypes.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" +project_hash = "50816e27a0de4f240628dfe935d6217c5ee395d0" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -479,21 +464,44 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractPlutoDingetjes]] -deps = ["Pkg"] -git-tree-sha1 = "6e1d2a35f2f90a4bc7c2ed98079b2ba09c35b83a" +git-tree-sha1 = "e71ee7b4aa06b045259a7d6101e1cb45ad140bce" uuid = "6e696c72-6542-2067-7265-42206c756150" -version = "1.3.2" +version = "1.4.1" [[deps.AbstractTrees]] git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.5" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "7063ad1083578215c7c4bf410368150abe8d5524" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.45" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +deps = ["LinearAlgebra"] +git-tree-sha1 = "dee8388a9bec89c8713ad176f96960ae2f98598a" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.7.4" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -508,7 +516,7 @@ version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -528,47 +536,11 @@ git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.2+0" -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" - - [deps.ArrayInterface.extensions] - ArrayInterfaceAMDGPUExt = "AMDGPU" - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] - ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" - ArrayInterfaceChainRulesExt = "ChainRules" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceMetalExt = "Metal" - ArrayInterfaceReverseDiffExt = "ReverseDiff" - ArrayInterfaceSparseArraysExt = "SparseArrays" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" - ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "e0b47732a192dd59b9d079a06d04235e2f833963" +git-tree-sha1 = "b4a2d2dfcaedf8f0cb93a970c4ccba6f632f14cc" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.12.2" +version = "1.15.1" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -576,6 +548,13 @@ weakdeps = ["SparseArrays"] [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" + +[[deps.AutoregressiveMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "4c9f3f4edd4580e385535bce39a6a39f8f1a6aa9" +uuid = "bbb8872a-15f9-43f6-924d-37f12d04ed53" +version = "1.0.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] @@ -585,22 +564,18 @@ version = "1.1.0" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.BayesBase]] deps = ["Distributions", "DomainSets", "LinearAlgebra", "Random", "SpecialFunctions", "StaticArrays", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "5b723bf6b1081cab4d263e425be097224e0f434f" +git-tree-sha1 = "cadec5ad37b53e1198f36524b30297fc0df98aae" uuid = "b4ee3484-f114-42fe-b91c-797d54a0c67e" -version = "1.5.8" +version = "1.5.12" weakdeps = ["FastCholesky"] [deps.BayesBase.extensions] FastCholeskyExt = "FastCholesky" -[[deps.BitFlags]] -git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" -uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.9" - [[deps.BitSetTuples]] deps = ["TupleTools"] git-tree-sha1 = "aa19428fb6ad21db22f8568f068de4f443d3bacc" @@ -609,9 +584,9 @@ version = "1.1.5" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "0f606a9894e2bcda541ceb82a91a13c5d450ed97" +git-tree-sha1 = "876d4c4b941cc8b079da79c88d9c2dee52b9dd13" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "1.9.3" +version = "1.10.3" [deps.BlockArrays.extensions] BlockArraysAdaptExt = "Adapt" @@ -634,31 +609,31 @@ uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "0cfb779e24fdced77a05df1dbe99200821a9f563" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" +version = "1.18.8+1" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" +deps = ["LinearAlgebra"] +git-tree-sha1 = "4378c3544d8fcc3c8a521782db0e93e2c32d1838" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" +version = "1.26.4" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChunkCodecCore]] -git-tree-sha1 = "1a3ad7e16a321667698a19e77362b35a1e94c544" +git-tree-sha1 = "3496e2b359c27793d12bec54ec94be7983a6ceb2" uuid = "0b6fb165-00bc-4d37-ab8b-79f91016dbe1" -version = "1.0.1" +version = "1.0.2" [[deps.ChunkCodecLibZlib]] deps = ["ChunkCodecCore", "Zlib_jll"] -git-tree-sha1 = "cee8104904c53d39eb94fd06cbe60cb5acde7177" +git-tree-sha1 = "d4101e848e8d3f585d61d244c2fe0c80a70e6b3b" uuid = "4c0bbee4-addc-4d73-81a0-b6caacae83c8" -version = "1.0.0" +version = "1.1.0" [[deps.ChunkCodecLibZstd]] deps = ["ChunkCodecCore", "Zstd_jll"] @@ -674,9 +649,9 @@ version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" +git-tree-sha1 = "970758a3d591a2a5c2a907c53f2e2f8c1b1d3537" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.8" +version = "0.7.9" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -686,16 +661,14 @@ version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" +git-tree-sha1 = "a7cf827a79b378a381e31e5c7feca853ec19cb94" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.12.1" +version = "0.12.4" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -707,16 +680,22 @@ weakdeps = ["SpecialFunctions"] SpecialFunctionsExt = "SpecialFunctions" [[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Reexport"] +git-tree-sha1 = "a633156e74096f90b3b5e833529292b651b5671a" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.13.1" +version = "0.13.3" [[deps.Combinatorics]] git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" version = "1.1.0" +[[deps.CommonSolve]] +deps = ["PrecompileTools"] +git-tree-sha1 = "6c389fa857f6ca5a95474b52a52023fd77f24cb7" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.14" + [[deps.CommonSubexpressions]] deps = ["MacroTools"] git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" @@ -724,9 +703,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" [[deps.CommonWorldInvalidations]] -git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" +deps = ["PrecompileTools"] +git-tree-sha1 = "7c4ea0adfb7238bf4678aa36325863fab6163f6f" uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" -version = "1.0.0" +version = "1.2.2" [[deps.Compat]] deps = ["TOML", "UUIDs"] @@ -741,18 +721,21 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.1.1+0" +version = "1.3.1+2" [[deps.CompositeTypes]] git-tree-sha1 = "bce26c3dab336582805503bed209faab1c279768" uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657" version = "0.1.4" -[[deps.ConcurrentUtilities]] -deps = ["Serialization", "Sockets"] -git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" -uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.5.1" +[[deps.CompositionsBase]] +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" +uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" [[deps.ConstructionBase]] git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" @@ -776,10 +759,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "4e1fe97fdaed23e9dc21d4d664bea76b65fc50a0" +deps = ["OrderedCollections"] +git-tree-sha1 = "b0bc6d2cad1fed8b7fd59a1551a991cb3d2809e6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.22" +version = "0.19.6" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -789,6 +772,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -802,6 +786,18 @@ git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" +[[deps.DeltaMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase"] +git-tree-sha1 = "eb4eafdd796377c6dfc1e842363291c5db8525c6" +uuid = "ea5de7a7-24c9-4a61-90ce-ef77c844b13f" +version = "1.0.0" + + [deps.DeltaMessagePassingRules.extensions] + DeltaMessagePassingRulesProjectionExt = "ExponentialFamilyProjection" + + [deps.DeltaMessagePassingRules.weakdeps] + ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + [[deps.Dictionaries]] deps = ["Indexing", "Random", "Serialization"] git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" @@ -816,59 +812,15 @@ version = "1.1.0" [[deps.DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" +git-tree-sha1 = "79a2aca180a85c690c58a020d47b426954b590f8" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.15.1" +version = "1.16.0" -[[deps.DifferentiationInterface]] -deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" -uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" - - [deps.DifferentiationInterface.extensions] - DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" - DifferentiationInterfaceDiffractorExt = "Diffractor" - DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] - DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" - DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" - DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" - DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" - DifferentiationInterfaceGTPSAExt = "GTPSA" - DifferentiationInterfaceMooncakeExt = "Mooncake" - DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] - DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] - DifferentiationInterfaceSparseArraysExt = "SparseArrays" - DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" - DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" - DifferentiationInterfaceStaticArraysExt = "StaticArrays" - DifferentiationInterfaceSymbolicsExt = "Symbolics" - DifferentiationInterfaceTrackerExt = "Tracker" - DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] - - [deps.DifferentiationInterface.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" - Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" - FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" - Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" - SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.DiscreteTransitionMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase"] +git-tree-sha1 = "1bf03a659aa103303f73a2ef40d74c206b02305a" +uuid = "039b7295-e235-4523-a933-c224bd9a7e58" +version = "1.0.0" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] @@ -884,21 +836,24 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "Roots", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "2ddbc341251ed713d39e503b504593a5d6789551" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.132" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsSparseConnectivityTracerExt = "SparseConnectivityTracer" DistributionsTestExt = "Test" [deps.Distributions.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.DocStringExtensions]] @@ -906,30 +861,26 @@ git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" -[[deps.DomainIntegrals]] -deps = ["CompositeTypes", "DomainSets", "FastGaussQuadrature", "GaussQuadrature", "HCubature", "IntervalSets", "LinearAlgebra", "QuadGK", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "934bf806ef2948114243f25e84a3ddf775d0f1a6" -uuid = "cc6bae93-f070-4015-88fd-838f9505a86c" -version = "0.5.2" - [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "c249d86e97a7e8398ce2068dce4c078a1c3464de" +deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "6ac879a64381881dc24f96a15e13e80204439906" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.16" +version = "0.8.3" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" DomainSetsRandomExt = "Random" + DomainSetsRecipesBaseExt = "RecipesBase" [deps.DomainSets.weakdeps] Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" +version = "1.7.0" [[deps.EnumX]] git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" @@ -942,35 +893,29 @@ git-tree-sha1 = "8a4be429317c42cfae6a7fc03c31bad1970c310d" uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" version = "0.0.20230411+1" -[[deps.ExceptionUnwrapping]] -deps = ["Test"] -git-tree-sha1 = "d36f682e590a83d63d1c7dbd287573764682d12a" -uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.11" - [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "d0f666deaf8099a7d7ac229a74402ada88898be1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" +version = "2.9.0+0" [[deps.ExponentialFamily]] deps = ["BayesBase", "BlockArrays", "Distributions", "DomainSets", "FastCholesky", "FillArrays", "ForwardDiff", "HCubature", "HypergeometricFunctions", "IntervalSets", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "PositiveFactorizations", "Random", "SparseArrays", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "TinyHugeNumbers"] -git-tree-sha1 = "152c1a65622d0fe770d95ef6cdf427670be2da51" +git-tree-sha1 = "22a03af5898b5f988efdd835f40af831164f7d4b" uuid = "62312e5e-252a-4322-ace9-a5f4bf9b357b" -version = "2.2.0" +version = "2.7.1" [[deps.FFMPEG]] deps = ["FFMPEG_jll"] -git-tree-sha1 = "95ecf07c2eea562b5adbd0696af6db62c0f52560" +git-tree-sha1 = "7bd13840b4148949e290748071bbe6826b3eabcd" uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.5" +version = "0.4.6" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "66381d7059b5f3f6162f28831854008040a4e905" +git-tree-sha1 = "d9d3cd382f2c999f684e6bfa4039fcc16c153b6f" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+1" +version = "9.0.2+0" [[deps.FFTA]] deps = ["AbstractFFTs", "DocStringExtensions", "LinearAlgebra", "MuladdMacro", "Primes", "Random", "Reexport"] @@ -980,25 +925,29 @@ version = "0.3.1" [[deps.FastCholesky]] deps = ["LinearAlgebra", "PositiveFactorizations"] -git-tree-sha1 = "1c0a81e006e40e9fcbd5f6f6cb42ac2700f86889" +git-tree-sha1 = "02f0dc1afe2c0bb73a0881727a4bf771a19ec190" uuid = "2d5283b6-8564-42b6-bb00-83ed8e915756" -version = "1.4.3" -weakdeps = ["StaticArraysCore"] +version = "1.5.0" [deps.FastCholesky.extensions] + ReactantExt = "Reactant" StaticArraysCoreExt = "StaticArraysCore" + [deps.FastCholesky.weakdeps] + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "0044e9f5e49a57e88205e8f30ab73928b05fe5b6" +git-tree-sha1 = "4916117dd032ec5959b7633aedbbac408ca5ddeb" uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "1.1.0" +version = "1.3.0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "6522cfb3b8fe97bec632252263057996cbd3de20" +git-tree-sha1 = "6621fef488e496356c9c9625d0562c12a6070819" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.18.0" +version = "1.20.0" weakdeps = ["HTTP"] [deps.FileIO.extensions] @@ -1006,12 +955,13 @@ weakdeps = ["HTTP"] [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "2f979084d1e13948a3352cf64a25df6bd3b4dca3" +git-tree-sha1 = "417289ac840d201005d9ed16789a46defccbe36d" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.16.0" +version = "1.18.1" weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [deps.FillArrays.extensions] @@ -1020,41 +970,17 @@ weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] FillArraysStaticArraysExt = "StaticArrays" FillArraysStatisticsExt = "Statistics" -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" - FiniteDiffSparseArraysExt = "SparseArrays" - FiniteDiffStaticArraysExt = "StaticArrays" - - [deps.FiniteDiff.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - -[[deps.FixedArguments]] -deps = ["TupleTools"] -git-tree-sha1 = "befa1ad59c77643dec6fc20d71fd6f5c3afcdadd" -uuid = "4130a065-6d82-41fe-881e-7a5c65156f7d" -version = "0.1.1" - [[deps.FixedPointNumbers]] -deps = ["Statistics"] -git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" +deps = ["Random", "Statistics"] +git-tree-sha1 = "59af96b98217c6ef4ae0dfe065ac7c20831d1a84" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.5" +version = "0.8.6" [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] -git-tree-sha1 = "f85dac9a96a01087df6e3a749840015a0ca3817d" +git-tree-sha1 = "e1e9ba3a8f5d71e6ae698f138a1362aeabb42e9f" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.17.1+0" +version = "2.18.3+0" [[deps.Format]] git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" @@ -1063,9 +989,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" +git-tree-sha1 = "3b0f72e2ffef1a139ac450725c9ecd01c0a3c050" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.3.3" +version = "1.4.6" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -1073,31 +999,39 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" +git-tree-sha1 = "d95a7a3a7e0f2fffc6291bd33035830aab01310b" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.14.3+1" +version = "2.15.0+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" +git-tree-sha1 = "f3f50c8001bdfa84f312234fa86715b7c9243771" uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.17+0" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.0.18+0" + +[[deps.FunctionMaps]] +deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" +uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" +version = "0.1.2" + +[[deps.GCVMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "StandardMessagePassingRules", "StatsFuns"] +git-tree-sha1 = "b9d896eff3b7dd887b119675f96d210abc31f2a9" +uuid = "2bb838d1-ae36-49a2-8c64-82a0acccfa93" +version = "1.0.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "64bbbb7d1499297751b536dd39c58b20750ab1db" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.5.1+0" [[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "44716a1a667cb867ee0e9ec8edc31c3e4aa5afdc" +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "4d777f73c46b46b8b5276206059cf8a195499314" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.24" +version = "0.73.27" [deps.GR.extensions] IJuliaExt = "IJulia" @@ -1107,15 +1041,20 @@ version = "0.73.24" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "be8a1b8065959e24fdc1b51402f39f3b6f0f6653" +git-tree-sha1 = "f8eb8f7ba13ea75083531647fc8faeda8d541f07" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.24+0" +version = "0.73.27+0" + +[[deps.Gamma]] +git-tree-sha1 = "86f86b6168a016ed88e4ae4e64577b98c3b59e8e" +uuid = "a0844989-3bd2-4988-8bea-c9407ab0941b" +version = "1.1.0" -[[deps.GaussQuadrature]] -deps = ["SpecialFunctions"] -git-tree-sha1 = "eb6f1f48aa994f3018cbd029a17863c6535a266d" -uuid = "d54b0c1a-921d-58e0-8e36-89d8069c0969" -version = "0.5.8" +[[deps.GaussianCouplingMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "MessagePassingRulesBase"] +git-tree-sha1 = "73948ad868fa022db11c678aaf1415ddb762f219" +uuid = "a57ce80c-d854-4eb3-973d-f0d0550df039" +version = "1.0.0" [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] @@ -1131,15 +1070,15 @@ version = "9.55.1+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "24f6def62397474a297bfcec22384101609142ed" +git-tree-sha1 = "ea9f1fb37ff10597353b56f3ba0ebd525acef6e0" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.86.3+0" +version = "2.90.1+0" [[deps.GraphPPL]] deps = ["BitSetTuples", "DataStructures", "Dictionaries", "MacroTools", "MetaGraphsNext", "NamedTupleTools", "Static", "StaticArrays", "TupleTools", "Unrolled"] -git-tree-sha1 = "f43d90e787e67a70de9628292607ac29a2bc2cc0" +git-tree-sha1 = "2d10297851848d1b6dc1dc335e549068e7890477" uuid = "b3f8163a-e979-4e85-b43e-1f63d8c8b42c" -version = "4.6.6" +version = "4.9.0" [deps.GraphPPL.extensions] GraphPPLDistributionsExt = "Distributions" @@ -1154,20 +1093,19 @@ version = "4.6.6" [[deps.Graphite2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8a6dbda1fd736d60cc477d99f2e7a042acfa46e8" +git-tree-sha1 = "69ffb934a5c5b7e086a0b4fee3427db2556fba6e" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.15+0" +version = "1.3.16+0" [[deps.Graphs]] -deps = ["ArnoldiMethod", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "7a98c6502f4632dbe9fb1973a4244eaa3324e84d" +deps = ["ArnoldiMethod", "DataStructures", "Inflate", "LinearAlgebra", "Random", "SimpleTraits", "SparseArrays", "Statistics"] +git-tree-sha1 = "dbb2b976f605b220dfe139d6db9f3859680da09e" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.13.1" +version = "1.15.0" +weakdeps = ["Distributed", "SharedArrays"] -[[deps.Grisu]] -git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" -uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" -version = "1.0.2" + [deps.Graphs.extensions] + GraphsSharedArraysExt = "SharedArrays" [[deps.HCubature]] deps = ["Combinatorics", "DataStructures", "LinearAlgebra", "QuadGK", "StaticArrays"] @@ -1176,16 +1114,16 @@ uuid = "19dc6840-f33b-545b-b366-655c7e3ffd49" version = "1.8.0" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "51059d23c8bb67911a2e6fd5130229113735fc7e" +deps = ["Base64", "CodecZlib", "Dates", "EnumX", "Logging", "PrecompileTools", "Random", "Reseau", "SHA", "URIs", "UUIDs", "Zlib_jll"] +git-tree-sha1 = "33d8e43f09dce4d79b076f3022e96063db806df3" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.11.0" +version = "2.11.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] -git-tree-sha1 = "f923f9a774fcf3f5cb761bfa43aeadd689714813" +git-tree-sha1 = "9e544f0758a2341e7e782fde6f3f67610366661c" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "8.5.1+0" +version = "100.14006.0+0" [[deps.HashArrayMappedTries]] git-tree-sha1 = "2eaa69a7cab70a52b9687c8bf950a5a93ec895ae" @@ -1193,10 +1131,10 @@ uuid = "076d061b-32b6-4027-95e0-9a2c6f6d7e74" version = "0.2.0" [[deps.HypergeometricFunctions]] -deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" +deps = ["Gamma", "LinearAlgebra"] +git-tree-sha1 = "31bb6c92405c084617facc1d7ed9eb6c402d061e" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.28" +version = "0.3.30" [[deps.Hyperscript]] deps = ["Test"] @@ -1232,19 +1170,20 @@ uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" version = "0.1.5" [[deps.IntegerMathUtils]] -git-tree-sha1 = "4c1acff2dc6b6967e7e750633c50bc3b8d83e617" +git-tree-sha1 = "c72458f1962faeb003bf23cbdb75164fe6280906" uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" -version = "0.1.3" +version = "0.1.4" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "65d505fa4c0d7072990d659ef3fc086eb6da8208" +git-tree-sha1 = "48922d06068130f87e43edef52382e6a94305ae6" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.16.2" +version = "0.16.3" [deps.Interpolations.extensions] InterpolationsForwardDiffExt = "ForwardDiff" @@ -1255,20 +1194,36 @@ version = "0.16.2" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.IntervalSets]] -git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" +git-tree-sha1 = "0db6aea5b64caa1c47e9fdd27394f0296f05e8bf" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.13" -weakdeps = ["Random", "RecipesBase", "Statistics"] +version = "0.7.15" [deps.IntervalSets.extensions] + IntervalSetsMakieExt = "Makie" IntervalSetsRandomExt = "Random" IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" + [deps.IntervalSets.weakdeps] + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + +[[deps.InverseFunctions]] +git-tree-sha1 = "5cc6ad3e2bfc75a11eed92632ee341d37f4a4536" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.18" +weakdeps = ["Dates", "Test"] + + [deps.InverseFunctions.extensions] + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" + [[deps.IrrationalConstants]] -git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" +git-tree-sha1 = "d22e8bdb3f03c300a103ff23c0dd5a654c6701de" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.6" +version = "0.2.7" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -1276,10 +1231,10 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLD2]] -deps = ["ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] -git-tree-sha1 = "941f87a0ae1b14d1ac2fa57245425b23a9d7a516" +deps = ["ChunkCodecCore", "ChunkCodecLibZlib", "ChunkCodecLibZstd", "FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "ScopedValues"] +git-tree-sha1 = "9ce2e7c49ae4a7035b7d60db3a553b1f6c16875d" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.6.4" +version = "0.6.7" [deps.JLD2.extensions] UnPackExt = "UnPack" @@ -1295,15 +1250,15 @@ version = "0.1.11" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "0533e564aae234aff59ab625543145446d8b6ec2" +git-tree-sha1 = "7204148362dafe5fe6a273f855b8ccbe4df8173e" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.7.1" +version = "1.8.0" [[deps.JSON]] deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] -git-tree-sha1 = "b3ad4a0255688dcb895a52fafbaae3023b588a90" +git-tree-sha1 = "9939eb6f799a963b3392ac4a1d49d3fc0646eb80" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "1.4.0" +version = "1.11.0" [deps.JSON.extensions] JSONArrowExt = ["ArrowTypes"] @@ -1313,15 +1268,20 @@ version = "1.4.0" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "037babc10853eeb8e585418922246cb97b8e5b74" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.2.0+1" + +[[deps.JuliaSyntaxHighlighting]] +deps = ["StyledStrings"] +uuid = "ac6e5ff7-fb65-4e79-a425-ec3bc9c03011" +version = "1.12.0" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTA", "Interpolations", "StatsBase"] -git-tree-sha1 = "4260cfc991b8885bf747801fb60dd4503250e478" +git-tree-sha1 = "9eda8292dd3268b3b7ec9df21bbfac24e177ec52" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.11" +version = "0.6.12" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1331,32 +1291,26 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "39bca05343661c347aae0bca57a5994a0bf4f08d" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.2.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" +git-tree-sha1 = "e5b100780d4d30d63b4618d7930d48af409c1772" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "18.1.8+0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" +version = "23.1.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" +git-tree-sha1 = "f88f3ccef05a6a72a0cf0ed417c8fd68530f4ab2" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.4.0" +version = "1.4.1" [[deps.Latexify]] deps = ["Format", "Ghostscript_jll", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] -git-tree-sha1 = "44f93c47f9cd6c7e431f2f2091fcba8f01cd7e8f" +git-tree-sha1 = "df7566479bd64f20bd16b09960145e70160ffb3b" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.10" +version = "0.16.12" [deps.Latexify.extensions] DataFramesExt = "DataFrames" @@ -1370,50 +1324,34 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "41d433e5854d7a67e8ab2b04962a713fcbcffcf1" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.9.5" - - [deps.LazyArrays.extensions] - LazyArraysBandedMatricesExt = "BandedMatrices" - LazyArraysBlockArraysExt = "BlockArrays" - LazyArraysBlockBandedMatricesExt = "BlockBandedMatrices" - LazyArraysStaticArraysExt = "StaticArrays" - - [deps.LazyArrays.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" version = "0.6.4" [[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.15.0+0" [[deps.LibGit2]] -deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +deps = ["LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.9.0+0" [[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] +deps = ["Artifacts", "Libdl", "OpenSSL_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.11.0+1" +version = "1.11.3+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1435,31 +1373,26 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "b8a91037379e1fd661e9b5ff3d7a770424b1f9f2" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.4+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "f04133fe05eff1667d2054c53d59f9122383fe05" +git-tree-sha1 = "aebd334d06cee9f24cea70bd19a39749daf73881" uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.7.2+0" +version = "4.7.3+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "9e887184f306b28dbfcff88cefbb0ec80f1aa9e0" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" - -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] -git-tree-sha1 = "9ea3422d03222c6de679934d1c08f0a99405aa03" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.5.1" +version = "2.42.4+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.12.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] @@ -1479,12 +1412,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.LoggingExtras]] -deps = ["Dates", "Logging"] -git-tree-sha1 = "f00544d95982ea270145636c181ceda21c4e2575" -uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.2.0" +version = "1.11.0" [[deps.MIMEs]] git-tree-sha1 = "c64d943587f7187e751162b3b84445bbbd79f691" @@ -1497,8 +1425,9 @@ uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.16" [[deps.Markdown]] -deps = ["Base64"] +deps = ["Base64", "JuliaSyntaxHighlighting", "StyledStrings"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MatrixCorrectionTools]] deps = ["LinearAlgebra"] @@ -1506,22 +1435,23 @@ git-tree-sha1 = "73f93b21eae5714c282396bfae9d9f13d6ad04b6" uuid = "41f81499-25de-46de-b591-c3cfc21e9eaf" version = "1.2.0" -[[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] -git-tree-sha1 = "8785729fa736197687541f7053f6d8ab7fc44f92" -uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.10" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" - [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" version = "0.3.3" +[[deps.MessagePassingRulesApproximations]] +deps = ["Compat", "FastCholesky", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra"] +git-tree-sha1 = "0904181cd2a25ed85da53a3426af17f0fb7bb193" +uuid = "36043009-14b3-4068-9fb9-f1e492c92d7d" +version = "1.0.0" + +[[deps.MessagePassingRulesBase]] +deps = ["BayesBase", "Compat", "FastCholesky", "IrrationalConstants", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "386ffd59dc3b21d3d36542c41f7b0326c821813f" +uuid = "4a5b64c7-30c9-4471-82f2-bbe8464b157d" +version = "1.1.2" + [[deps.MetaGraphsNext]] deps = ["Graphs", "JLD2", "SimpleTraits"] git-tree-sha1 = "1983a06112db00c54e171f5cff8788c8efbdae85" @@ -1536,33 +1466,29 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" +version = "2025.11.4" [[deps.MuladdMacro]] -git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" +deps = ["PrecompileTools"] +git-tree-sha1 = "283bf85d4a767481dd924dff0eee1735e95f449e" uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" -version = "0.2.4" +version = "0.2.7" [[deps.MultivariateStats]] deps = ["Arpack", "Distributions", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] -git-tree-sha1 = "7c3ff68a904d0f7404e5d2f7f5bc667934d8d616" +git-tree-sha1 = "8bcdc90d5c361a73635ad1c19d9c39a52bf3e0a3" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" -version = "0.10.4" - -[[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "25a6638571a902ecfb1ae2a18fc1575f86b1d4df" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.10.0" +version = "0.10.5" [[deps.NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "9b8215b1ee9e78a293f99797cd31375471b2bcae" +git-tree-sha1 = "676c0f1c1c34224d6869675047a54b42fdc7b8c5" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.1.3" +version = "1.1.5" [[deps.NamedTupleTools]] git-tree-sha1 = "90914795fc59df44120fe3fff6742bb0d7adb1d0" @@ -1571,13 +1497,13 @@ version = "0.14.3" [[deps.NearestNeighbors]] deps = ["AbstractTrees", "Distances", "StaticArrays"] -git-tree-sha1 = "e2c3bba08dd6dedfe17a17889131b885b8c082f0" +git-tree-sha1 = "576eb4656529c12e77a46b17c23103dfba9fa570" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.27" +version = "0.4.29" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" +version = "1.3.0" [[deps.Observables]] git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" @@ -1602,24 +1528,17 @@ version = "1.3.6+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+4" +version = "0.3.29+0" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.5+0" - -[[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "1d1aaa7d449b58415f97d2839c318b70ffb525a0" -uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.6.1" +version = "0.8.7+0" [[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c9cbeda6aceffc52d8a0017e71db27c7a7c0beaf" +deps = ["Artifacts", "Libdl"] uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.5+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1627,18 +1546,6 @@ git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.6+0" -[[deps.Optim]] -deps = ["Compat", "EnumX", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "48968edaf014f67e58fe4c8a4ce72d392aed3294" -uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.13.3" - - [deps.Optim.extensions] - OptimMOIExt = "MathOptInterface" - - [deps.Optim.weakdeps] - MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" - [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "e2bb57a313a74b8104064b7efd01406c0a50d2ff" @@ -1646,20 +1553,20 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.6.1+0" [[deps.OrderedCollections]] -git-tree-sha1 = "05868e21324cede2207c6f0f466b4bfef6d5e7ee" +git-tree-sha1 = "b079a6affebde167dad8ffe0d670b53917fbcb68" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.8.1" +version = "2.0.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+1" +version = "10.44.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e4cff168707d441cd6bf3ff7e4832bdf34278e4a" +git-tree-sha1 = "123266c25174ef6c8d4718920abc206452cf8de6" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.37" +version = "0.11.41" weakdeps = ["StatsBase"] [deps.PDMats.extensions] @@ -1667,26 +1574,30 @@ weakdeps = ["StatsBase"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "1912a9f1b9ca55005b03ba075f8e19993583e237" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.58.2+0" [[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +deps = ["Dates", "PrecompileTools"] +git-tree-sha1 = "663e8b48b789916221e0765393b289ca6c88f24e" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "3.0.0" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "db76b1ecd5e9715f3d043cec13b2ec93ce015d53" +git-tree-sha1 = "e4a6721aa89e62e5d4217c0b21bd714263779dda" uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.44.2+0" +version = "0.46.4+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.12.1" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1695,16 +1606,16 @@ uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" version = "3.3.0" [[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "StableRNGs", "Statistics"] -git-tree-sha1 = "26ca162858917496748aad52bb5d3be4d26a228a" +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Reexport", "Statistics"] +git-tree-sha1 = "ddcc36fd83fb4cd459a53c891981697bde0d3de6" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.4.4" +version = "1.5.1" [[deps.Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "cb20a4eacda080e517e4deb9cfb6c7c518131265" +git-tree-sha1 = "83bd514e8ff16b5858ac54c53fa0bcf6002a3b00" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.41.6" +version = "1.41.7" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1728,15 +1639,9 @@ version = "0.4.7" [[deps.PlutoUI]] deps = ["AbstractPlutoDingetjes", "Base64", "ColorTypes", "Dates", "Downloads", "FixedPointNumbers", "Hyperscript", "HypertextLiteral", "IOCapture", "InteractiveUtils", "Logging", "MIMEs", "Markdown", "Random", "Reexport", "URIs", "UUIDs"] -git-tree-sha1 = "fbc875044d82c113a9dee6fc14e16cf01fd48872" +git-tree-sha1 = "e189d0623e7ce9c37389bac17e80aac3b0302e75" uuid = "7f904dfe-b85e-4ff6-b463-dae2292396a8" -version = "0.7.80" - -[[deps.PolyaGammaHybridSamplers]] -deps = ["Distributions", "Random", "SpecialFunctions", "StatsFuns"] -git-tree-sha1 = "9f6139650ff57f9d8528cd809ebc604c7e9738b1" -uuid = "c636ee4f-4591-4d8c-9fae-2dea21daa433" -version = "1.2.6" +version = "0.7.83" [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] @@ -1746,15 +1651,15 @@ version = "0.2.4" [[deps.PrecompileTools]] deps = ["Preferences"] -git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +git-tree-sha1 = "edbeefc7a4889f528644251bdb5fc9ab5348bc2c" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.1" +version = "1.3.4" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "8b770b60760d4451834fe79dd483e318eee709c4" +git-tree-sha1 = "aef1987d90dcc2e2cbd919ad10b2d25bcce4f418" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.5.2" +version = "1.6.1" [[deps.Primes]] deps = ["IntegerMathUtils"] @@ -1765,12 +1670,21 @@ version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.ProgressMeter]] -deps = ["Distributed", "Printf"] -git-tree-sha1 = "fbb92c6c56b34e1a2c4c36058f68f332bec840e7" +deps = ["Printf"] +git-tree-sha1 = "ce5ba3edfdeba107a721748d53b5f5887f415853" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.11.0" +version = "1.13.0" + + [deps.ProgressMeter.extensions] + ProgressMeterDistributedExt = "Distributed" + ProgressMeterIJuliaExt = "IJulia" + + [deps.ProgressMeter.weakdeps] + Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" @@ -1779,15 +1693,15 @@ version = "1.4.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "d7a4bff94f42208ce3cf6bc8e4e7d1d663e7ee8b" +git-tree-sha1 = "144895f6166994730ee7ff8113b981fc360638f1" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.10.2+1" +version = "6.10.2+2" [[deps.Qt6Declarative_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll", "Qt6Svg_jll"] -git-tree-sha1 = "d5b7dd0e226774cbd87e2790e34def09245c7eab" +git-tree-sha1 = "159d253ab126d5b29230cf53521899bea4ef4648" uuid = "629bc702-f1f5-5709-abd5-49b8460ea067" -version = "6.10.2+1" +version = "6.10.2+2" [[deps.Qt6ShaderTools_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] @@ -1809,9 +1723,9 @@ version = "6.10.2+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -1820,12 +1734,14 @@ version = "2.11.2" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "JuliaSyntaxHighlighting", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.Ratios]] deps = ["Requires"] @@ -1838,24 +1754,22 @@ weakdeps = ["FixedPointNumbers"] RatiosFixedPointNumbersExt = "FixedPointNumbers" [[deps.ReactiveMP]] -deps = ["BayesBase", "DataStructures", "DiffResults", "Distributions", "DomainIntegrals", "DomainSets", "ExponentialFamily", "FastCholesky", "FastGaussQuadrature", "FixedArguments", "ForwardDiff", "HCubature", "LazyArrays", "LinearAlgebra", "MacroTools", "MatrixCorrectionTools", "Optim", "PolyaGammaHybridSamplers", "PositiveFactorizations", "Random", "Rocket", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "TinyHugeNumbers", "Tullio", "TupleTools", "Unrolled"] -git-tree-sha1 = "36aa812857bf9cbb57e1d2e83b5940b55514e205" +deps = ["BayesBase", "Compat", "Distributions", "LinearAlgebra", "MacroTools", "MessagePassingRulesBase", "Random", "Rocket", "TinyHugeNumbers", "TupleTools", "UUIDs"] +git-tree-sha1 = "944722ce6bfb8b1cdfb05a123afe9fe397fbd725" uuid = "a194aa59-28ba-4574-a09c-4a745416d6e3" -version = "5.6.6" +version = "7.0.0" [deps.ReactiveMP.extensions] - ReactiveMPOptimisersExt = "Optimisers" - ReactiveMPProjectionExt = "ExponentialFamilyProjection" + ReactiveMPReactantExt = "Reactant" [deps.ReactiveMP.weakdeps] - ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" - Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" [[deps.RecipesBase]] deps = ["PrecompileTools"] -git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" +git-tree-sha1 = "0c0dcffc464cda2ff33fc8ffc1dd1bdd53cd98be" uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.3.4" +version = "1.4.0" [[deps.RecipesPipeline]] deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] @@ -1880,6 +1794,12 @@ git-tree-sha1 = "62389eeff14780bfe55195b7204c0d8738436d64" uuid = "ae029012-a4dd-5104-9daa-d747884805df" version = "1.3.1" +[[deps.Reseau]] +deps = ["NetworkOptions", "OpenSSL_jll", "PrecompileTools", "Random", "SHA"] +git-tree-sha1 = "c1332beecf9cf267e99b83ab878a3460f047964f" +uuid = "802f3686-a58f-41ce-bb0c-3c43c75bba36" +version = "1.6.1" + [[deps.Rmath]] deps = ["Random", "Rmath_jll"] git-tree-sha1 = "5b3d50eb374cea306873b371d3f8d3915a018f0b" @@ -1888,44 +1808,77 @@ version = "0.9.0" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8" +git-tree-sha1 = "6d40b2fe70437b01397d2a4d5b020008da4e7019" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.5.1+0" +version = "0.5.2+0" [[deps.Rocket]] deps = ["DataStructures", "Sockets", "Unrolled"] -git-tree-sha1 = "b4acc00b23fab46656e96bc68a27827b041efe74" +git-tree-sha1 = "ad8f448adaaedd25803f12bcff8d59a8a1dd8bbb" uuid = "df971d30-c9d6-4b37-b8ff-e965b2cb3a40" -version = "1.8.4" +version = "1.11.0" +weakdeps = ["Observables"] + + [deps.Rocket.extensions] + RocketObservablesExt = "Observables" + +[[deps.Roots]] +deps = ["Accessors", "CommonSolve", "Printf"] +git-tree-sha1 = "e6ffa7bd4f8d0b8744d18f219304738d952f9a37" +uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" +version = "3.0.11" + + [deps.Roots.extensions] + RootsChainRulesCoreExt = "ChainRulesCore" + RootsForwardDiffExt = "ForwardDiff" + RootsIntervalRootFindingExt = "IntervalRootFinding" + RootsSymPyExt = "SymPy" + RootsSymPyPythonCallExt = "SymPyPythonCall" + RootsUnitfulExt = "Unitful" + + [deps.Roots.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.RxInfer]] -deps = ["BayesBase", "DataStructures", "Dates", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "Optim", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SparseArrays", "Static", "Statistics", "TupleTools", "UUIDs"] -git-tree-sha1 = "b149645c1e954105b96a89cfecb1e151c51651ec" +deps = ["AutoregressiveMessagePassingRules", "Base64", "BayesBase", "DataStructures", "Dates", "DeltaMessagePassingRules", "DiscreteTransitionMessagePassingRules", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "GCVMessagePassingRules", "GaussianCouplingMessagePassingRules", "GraphPPL", "HTTP", "JSON", "LinearAlgebra", "Logging", "MacroTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "PrecompileTools", "Preferences", "ProgressMeter", "Random", "ReactiveMP", "Reexport", "Rocket", "SoftDotMessagePassingRules", "SparseArrays", "StandardMessagePassingRules", "Static", "Statistics", "TupleTools", "UUIDs"] +git-tree-sha1 = "cbb0595f742056ccab20beba5cf2a1253294c6dd" uuid = "86711068-29c9-4ff7-b620-ae75d7495b3d" -version = "4.7.1" +version = "6.1.0" [deps.RxInfer.extensions] + OptimExt = "Optim" PrettyTablesExt = "PrettyTables" ProjectionExt = "ExponentialFamilyProjection" + ReactantExt = "Reactant" + TensorBoardLoggerExt = "TensorBoardLogger" [deps.RxInfer.weakdeps] ExponentialFamilyProjection = "17f509fa-9a96-44ba-99b2-1c5f01f0931b" + Optim = "429524aa-4258-5aef-a3af-852621145aeb" PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLPublic]] -git-tree-sha1 = "0ba076dbdce87ba230fff48ca9bca62e1f345c9b" +deps = ["PrecompileTools"] +git-tree-sha1 = "74685afb51732a464fbce79a72708f7c4203ceb7" uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" -version = "1.0.1" +version = "1.3.0" [[deps.ScopedValues]] deps = ["HashArrayMappedTries", "Logging"] -git-tree-sha1 = "ac4b837d89a58c848e85e698e2a2514e9d59d8f6" +git-tree-sha1 = "67a144433c4ce877ee6d1ada69a124d6b1ecf7be" uuid = "7e506255-f358-4e82-b7e4-beb19740aa63" -version = "1.6.0" +version = "1.6.2" [[deps.Scratch]] deps = ["Dates"] @@ -1935,59 +1888,57 @@ version = "1.3.0" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "ebe7e59b37c400f694f52b58c93d26201387da70" +git-tree-sha1 = "084c47c7c5ce5cfecefa0a98dff69eb3646b5a80" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.9" +version = "1.4.10" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "c5391c6ace3bc430ca630251d02ea9687169ca68" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.2" +version = "1.11.0" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +version = "1.11.0" [[deps.Showoff]] -deps = ["Dates", "Grisu"] -git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" +deps = ["Dates"] +git-tree-sha1 = "8238217340ad0aaabe11afe39c1098b5bc9f4c8e" uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" -version = "1.0.3" - -[[deps.SimpleBufferStream]] -git-tree-sha1 = "f305871d2f381d21527c770d4788c06c097c9bc1" -uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.2.0" +version = "1.1.1" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "be8eeac05ec97d379347584fa9fe2f5f76795bcb" +git-tree-sha1 = "7ddb0b49c109481b046972c0e4ab02b2127d6a75" uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" -version = "0.9.5" +version = "0.9.6" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" + +[[deps.SoftDotMessagePassingRules]] +deps = ["BayesBase", "Distributions", "ExponentialFamily", "LinearAlgebra", "MessagePassingRulesBase", "StatsFuns"] +git-tree-sha1 = "8ccebfa9b93d9908178cc0e97c4f4a480708740d" +uuid = "fdfab25d-afbd-4817-865a-cd280c067f5e" +version = "1.0.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "64d974c2e6fdf07f8155b5b2ca2ffa9069b608d9" +git-tree-sha1 = "13cd91cc9be159e3f4d95b857fa2aa383b53772a" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.2.2" +version = "1.2.3" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.12.0" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" +git-tree-sha1 = "429071b23f4c9a13fb6582f807cc2ef454082408" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.2" +version = "2.9.0" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -1999,17 +1950,23 @@ git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" +[[deps.StandardMessagePassingRules]] +deps = ["BayesBase", "Compat", "Distributions", "DomainSets", "ExponentialFamily", "FastCholesky", "LinearAlgebra", "LogExpFunctions", "MatrixCorrectionTools", "MessagePassingRulesApproximations", "MessagePassingRulesBase", "SpecialFunctions", "StatsFuns"] +git-tree-sha1 = "ca7e44b8d9c49483dfab3fc5e91346d032cb7d45" +uuid = "d166223a-7879-43b1-add3-64af0a178e9e" +version = "1.0.0" + [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" +git-tree-sha1 = "474a5283ad435618090122872eea6a8165ea6bcf" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" +version = "1.4.6" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" +git-tree-sha1 = "8a8a52f887f38d44014e24ee46b8a7311c625f6d" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.18" +version = "1.9.24" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2022,9 +1979,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "e2b53ce13a53367e96601081e33d34746b571bad" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.5" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2034,24 +1996,21 @@ version = "1.8.0" [[deps.StatsBase]] deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "aceda6f4e598d331548e04cc6b2124a6148138e3" +git-tree-sha1 = "adb9da019510162e67a4493fc235c23203d8b09e" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.10" +version = "0.34.13" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" +git-tree-sha1 = "0aa97471d55945556e8d2859568b8317cef98351" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.5.2" +version = "1.5.3" +weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" - [deps.StatsFuns.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" - [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] git-tree-sha1 = "88cf3587711d9ad0a55722d339a013c4c56c5bbc" @@ -2060,18 +2019,28 @@ version = "0.15.8" [[deps.StructUtils]] deps = ["Dates", "UUIDs"] -git-tree-sha1 = "28145feabf717c5d65c1d5e09747ee7b1ff3ed13" +git-tree-sha1 = "ad435e30854ed0f50f4b7f67edd71664afecc5d8" uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" -version = "2.6.3" +version = "2.10.0" [deps.StructUtils.extensions] + StructUtilsDataFramesExt = ["DataFrames"] + StructUtilsLazilyInitializedFieldsExt = ["LazilyInitializedFields"] StructUtilsMeasurementsExt = ["Measurements"] + StructUtilsStaticArraysCoreExt = ["StaticArraysCore"] StructUtilsTablesExt = ["Tables"] [deps.StructUtils.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazilyInitializedFields = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2079,7 +2048,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.8.3+2" [[deps.TOML]] deps = ["Dates"] @@ -2100,9 +2069,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" +git-tree-sha1 = "a94d9bdda1b7bed0046cea645639ab3f62196fac" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.12.1" +version = "1.14.0" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -2118,11 +2087,12 @@ version = "0.1.1" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.TinyHugeNumbers]] -git-tree-sha1 = "83c6abf376718345a85c071b249ef6692a8936d4" +git-tree-sha1 = "d5b24fd37550762d78280fb37c1800c3ea7e95cb" uuid = "783c9a47-75a3-44ac-a16b-f1ab7b3acf04" -version = "1.0.3" +version = "1.0.4" [[deps.TranscodingStreams]] git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" @@ -2134,40 +2104,25 @@ git-tree-sha1 = "311349fd1c93a31f783f977a71e8b062a57d4101" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.13" -[[deps.Tullio]] -deps = ["DiffRules", "LinearAlgebra", "Requires"] -git-tree-sha1 = "de0febfe1243e89f352abd4ca0e9de6c8e6190c5" -uuid = "bc48ee85-29a4-5162-ae0b-a64e1601d4bc" -version = "0.3.9" - - [deps.Tullio.extensions] - TullioCUDAExt = "CUDA" - TullioChainRulesCoreExt = "ChainRulesCore" - TullioFillArraysExt = "FillArrays" - TullioTrackerExt = "Tracker" - - [deps.Tullio.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.TupleTools]] -git-tree-sha1 = "41e43b9dc950775eac654b9f845c839cd2f1821e" +git-tree-sha1 = "a1c7e924f746f0ebc792425e7d4d2ea5b4470697" uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" -version = "1.6.0" +version = "1.6.1" [[deps.URIs]] -git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" +deps = ["Serialization"] +git-tree-sha1 = "0392e5e3c5327b90a487b0ff3e818c4aecd3660b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.6.1" +version = "1.7.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2200,9 +2155,9 @@ version = "1.24.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "e9aeb174f95385de31e70bd15fa066a505ea82b9" +git-tree-sha1 = "cab29ed70d9355a28b95b1798007ff3a00eefc91" uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.7" +version = "0.6.8" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] @@ -2212,9 +2167,9 @@ version = "1.1.0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "e52eca002a11c30a858185efdfb15311e1c7a6bf" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.4+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2230,9 +2185,9 @@ version = "1.2.6+0" [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "808090ede1d41644447dd5cbafced4731c56bd2f" +git-tree-sha1 = "ce91b54a5f90c4f27df6950706234b34e49cf79e" uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.13+0" +version = "1.8.14+0" [[deps.Xorg_libXau_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2266,9 +2221,9 @@ version = "6.0.2+0" [[deps.Xorg_libXi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "a376af5c7ae60d29825164db40787f15c80c7c54" +git-tree-sha1 = "704274ca960c42049fd9bda089fc4be32af5cdca" uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.8.3+0" +version = "1.8.5+0" [[deps.Xorg_libXinerama_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll"] @@ -2284,15 +2239,15 @@ version = "1.5.6+0" [[deps.Xorg_libXrender_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "7ed9347888fac59a618302ee38216dd0379c480d" +git-tree-sha1 = "a54cf54677c9f6eac0d97e9d757c233b56bc21b9" uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.12+0" +version = "0.9.13+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -2344,15 +2299,15 @@ version = "0.4.2+0" [[deps.Xorg_xkbcomp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "801a858fc9fb90c11ffddee1801bb06a738bda9b" +git-tree-sha1 = "9a5e6e8f1a7c40941465c04840145e527f0d6b4b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.7+0" +version = "1.5.0+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "df77b22eb77051b3d0ef30aab979684f7482c66f" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.48.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2363,7 +2318,7 @@ version = "1.6.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+1" +version = "1.3.1+2" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2385,20 +2340,20 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "0343a4dc329ca4dd71bf5c5b3fc1a8c2f6e0692d" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.15.2+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" +git-tree-sha1 = "cb007192783c56d8249db4cf0e3495001edfe414" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.17.4+0" +version = "0.17.5+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.11.0+0" +version = "5.15.0+0" [[deps.libdecor_jll]] deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] @@ -2408,9 +2363,9 @@ version = "0.2.2+0" [[deps.libdrm_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libpciaccess_jll"] -git-tree-sha1 = "63aac0bcb0b582e11bad965cef4a689905456c03" +git-tree-sha1 = "28e57478e8a160d346a19c28b3fffb9273bcc9c2" uuid = "8e53e030-5e6c-5a89-a30b-be5b7263a166" -version = "2.4.125+1" +version = "2.4.134+0" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2432,15 +2387,15 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e2a7072fc0cdd7949528c1455a3e5da4122e1153" +git-tree-sha1 = "1fcd6cf05d23adab0b5ffc496d020537215751dc" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.56+0" +version = "1.6.59+1" [[deps.libva_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll", "Xorg_libXfixes_jll", "libdrm_jll"] -git-tree-sha1 = "7dbf96baae3310fe2fa0df0ccbb3c6288d5816c9" +git-tree-sha1 = "21cbc8fc2ac0bb182ed461e556d9c062ae6a3164" uuid = "9a156e7d-b971-5f62-b2c9-67348b8fb97c" -version = "2.23.0+0" +version = "2.24.1+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] @@ -2457,12 +2412,12 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+2" +version = "17.7.0+0" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"]