diff --git a/amber/LICENSE-binary-python b/amber/LICENSE-binary-python
index 978689ffc50..f3fddd38ba1 100644
--- a/amber/LICENSE-binary-python
+++ b/amber/LICENSE-binary-python
@@ -217,11 +217,11 @@ Python packages:
   - boto3==1.42.90
   - botocore==1.42.90
   - frozenlist==1.8.0
-  - hf-xet==1.5.2
-  - huggingface-hub==1.26.0
+  - hf-xet==1.6.0
+  - huggingface-hub==1.28.0
   - multidict==6.7.1
   - overrides==7.7.0
-  - packaging==26.2
+  - packaging==26.3
   - propcache==0.5.2
   - pyarrow==23.0.1
   - pyiceberg==0.11.1
@@ -251,19 +251,19 @@ Python packages:
   - attrs==26.1.0
   - betterproto==2.0.0b7
   - cachetools==6.2.6
-  - charset-normalizer==3.4.9
-  - filelock==3.32.2
+  - charset-normalizer==3.5.1
+  - filelock==3.32.4
   - fonttools==4.63.0
-  - greenlet==3.5.4
+  - greenlet==3.5.5
   - h11==0.16.0
-  - h2==4.4.0
+  - h2==4.4.1
   - hpack==4.2.0
   - hyperframe==6.1.0
   - jmespath==1.1.0
   - loguru==0.7.3
   - markdown-it-py==4.2.0
   - mdurl==0.1.2
-  - mmh3==5.2.1
+  - mmh3==5.3.0
   - pampy==0.3.0
   - plotly==5.24.1
   - pydantic==2.13.4
@@ -274,11 +274,11 @@ Python packages:
   - pyyaml==6.0.3
   - readerwriterlock==1.0.9
   - rich==14.3.4
-  - scramp==1.4.15
+  - scramp==1.4.17
   - six==1.17.0
   - sqlalchemy==2.0.51
   - strictyaml==1.7.3
-  - typer==0.27.0
+  - typer==0.27.1
   - typing-inspection==0.4.2
   - tzlocal==2.1
   - urllib3==2.7.0
@@ -290,14 +290,14 @@ Dependencies under the BSD 3-Clause License
 
 Python packages:
   - cached-property==2.0.1
-  - click==8.4.2
+  - click==8.5.0
   - contourpy==1.3.3
   - cycler==0.12.1
   - fsspec==2026.6.0
   - grpclib==0.4.9
   - httpcore==1.0.9
   - httpx==0.28.1
-  - idna==3.18
+  - idna==3.19
   - jinja2==3.1.6
   - joblib==1.5.3
   - kiwisolver==1.5.0
@@ -312,10 +312,10 @@ Python packages:
   - s3fs==2026.6.0
   - scikit-image==0.25.2
   - scikit-learn==1.7.2
-  - scipy==1.18.0
+  - scipy==1.18.1
   - sympy==1.14.0
   - threadpoolctl==3.6.0
-  - tifffile==2026.7.14
+  - tifffile==2026.8.23
   - torch==2.13.0
   - zstandard==0.25.0
 
@@ -327,7 +327,7 @@ Python packages:
   - imageio==2.37.4
   - praw==7.6.1
   - prawcore==2.4.0
-  - pygments==2.20.0
+  - pygments==2.21.0
   - update-checker==1.0.0
   - wrapt==2.3.0