diff --git a/superset/commands/semantic_layer/update.py b/superset/commands/semantic_layer/update.py
index 3689ca315d93..d2b756f3ea18 100644
--- a/superset/commands/semantic_layer/update.py
+++ b/superset/commands/semantic_layer/update.py
@@ -219,7 +219,19 @@ def run(self) -> Model:
                 self._properties["configuration"]
             )
         if "configuration" in self._properties:
-            self._model.clear_metadata_cache()
+            try:
+                unchanged: bool = json.dumps(
+                    json.loads(self._model.configuration or "{}"), sort_keys=True
+                ) == json.dumps(
+                    json.loads(self._properties["configuration"]), sort_keys=True
+                )
+            except (TypeError, ValueError):
+                unchanged = False
+            if unchanged:
+                # Avoid overwriting a concurrent edit with this reader's old config.
+                self._properties.pop("configuration")
+            else:
+                self._model.clear_metadata_cache()
         return SemanticLayerDAO.update(self._model, attributes=self._properties)
 
     def validate(self) -> None:
diff --git a/tests/unit_tests/semantic_layers/simple_cache_clear_test.py b/tests/unit_tests/semantic_layers/simple_cache_clear_test.py
index 8b71bf732314..77fbfede503d 100644
--- a/tests/unit_tests/semantic_layers/simple_cache_clear_test.py
+++ b/tests/unit_tests/semantic_layers/simple_cache_clear_test.py
@@ -69,18 +69,19 @@ def layer(
 @pytest.mark.parametrize(
     "properties,expected",
     [
-        ({"configuration": {}}, 1),
+        ({"configuration": {}}, 0),
+        ({"configuration": {"value": "new"}}, 1),
         ({"description": "changed"}, 0),
     ],
 )
-def test_save_rotates_only_submitted_configuration(
+def test_save_rotates_only_changed_configuration(
     app: Flask,
     session: Session,
     layer: SemanticLayer,
     properties: dict[str, Any],
     expected: int,
 ) -> None:
-    """Save writes its generation in the same transaction, even for unchanged config."""
+    """Save rotates generation only when the effective configuration changes."""
     command: UpdateSemanticLayerCommand = UpdateSemanticLayerCommand(
         str(layer.uuid), properties
     )
@@ -91,6 +92,61 @@ def test_save_rotates_only_submitted_configuration(
     assert session.get(SemanticLayer, layer.uuid).cache_version == expected
 
 
+@pytest.mark.parametrize(
+    "stored,submitted,expected",
+    [
+        ('{ "b": 2, "a": {"x": 1} }', {"a": {"x": 1}, "b": 2}, 0),
+        ('{"value": true}', {"value": 1}, 1),
+        ("invalid JSON", {"value": "repaired"}, 1),
+        ('{"items": [1, 2]}', {"items": [2, 1]}, 1),
+    ],
+)
+def test_save_compares_configuration_content(
+    app: Flask,
+    session: Session,
+    layer: SemanticLayer,
+    stored: str,
+    submitted: dict[str, Any],
+    expected: int,
+) -> None:
+    """Ignore JSON formatting/key order, but preserve scalar types and list order."""
+    layer.configuration = stored
+    session.commit()
+    command: UpdateSemanticLayerCommand = UpdateSemanticLayerCommand(
+        str(layer.uuid), {"configuration": submitted}
+    )
+    command._model = layer
+    with app.app_context(), patch.object(command, "validate"):
+        command.run()
+    session.expire_all()
+    assert session.get(SemanticLayer, layer.uuid).cache_version == expected
+
+
+def test_noop_save_preserves_a_concurrent_configuration_change(
+    app: Flask,
+    session: Session,
+    layer: SemanticLayer,
+) -> None:
+    """A stale no-op reader must not overwrite a newer configuration/generation."""
+    layer.configuration = '{ "a": 1, "b": 2 }'
+    session.commit()
+    assert layer.configuration == '{ "a": 1, "b": 2 }'
+    session.execute(
+        SemanticLayer.__table__.update()
+        .where(SemanticLayer.uuid == layer.uuid)
+        .values(configuration='{"new": true}', cache_version=1)
+    )
+    command: UpdateSemanticLayerCommand = UpdateSemanticLayerCommand(
+        str(layer.uuid), {"configuration": {"b": 2, "a": 1}}
+    )
+    command._model = layer
+    with app.app_context(), patch.object(command, "validate"):
+        command.run()
+    session.expire_all()
+    assert layer.configuration == '{"new": true}'
+    assert layer.cache_version == 1
+
+
 def test_failed_save_rolls_back_configuration_and_version(
     app: Flask,
     session: Session,