Issues

• Check 6th step of Nanoseq pipeline

  abi-am/ONT_RNA_processing#11 · Filter by author hakobyansiras opened on Aug 19, 2022
  

• Run StringTie on aligned data, use IsoformSwitchAnalyzeR to import StringTie quantification in R for isoform switch analysis.

  abi-am/ONT_RNA_processing#10 · Filter by author hakobyansiras opened on Aug 19, 2022
  

• Upload final data processing scripts to GitHub.

  abi-am/ONT_RNA_processing#9 · Filter by author hakobyansiras opened on Aug 19, 2022
  

• Check IsoformSwitchAnalyzeR R package for compatibility with ONT long read RNA-seq isoform data analysis.

  abi-am/ONT_RNA_processing#8 · Filter by author hakobyansiras opened on Aug 19, 2022
  

• Download some aligned samples from amazon aws to compare with local alignment results

  abi-am/ONT_RNA_processing#7 · Filter by author hakobyansiras opened on Aug 18, 2022
  

• Check tutorial of bambu R package

  abi-am/ONT_RNA_processing#6 · Filter by author hakobyansiras opened on Aug 18, 2022
  

• Make presentation of the project and prepare slides of Indroduction

  abi-am/ONT_RNA_processing#5 · Filter by author hakobyansiras opened on Aug 17, 2022
  

• Perform alignment of direct cDNA samples to reference genome and transcriptome (minimap 2)

  abi-am/ONT_RNA_processing#4 · Filter by author hakobyansiras opened on Aug 17, 2022
  

• Perform quality check of ONT direct cDNA sequencing samples (fastqc, NanoPlot)

  abi-am/ONT_RNA_processing#3 · Filter by author hakobyansiras opened on Aug 17, 2022
  1

  

• Read the project paper

  abi-am/ONT_RNA_processing#1 · Filter by author hakobyansiras opened on Aug 17, 2022