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Fix MCP catalog refresh races and transport diagnostics (#1563) #5127

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Run time

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Job	Run time
Lint	19s
Typecheck	55s
Test	1m 29s
Format	23s
E2E (cloud 6of16)	2m 35s
E2E (selfhost 4of10)	1m 21s
E2E (local 1of2)	1m 0s
E2E (local 2of2)	43s
E2E (selfhost 6of10)	1m 14s
E2E (cloud 1of16)	2m 53s
E2E (cloud 7of16)	2m 38s
E2E (cloud 2of16)	1m 48s
E2E (selfhost 5of10)	1m 24s
E2E (cloud 3of16)	1m 31s
E2E (cloud 4of16)	1m 27s
Changed paths	6s
E2E (cloud 8of16)	2m 31s
E2E (cloud 15of16)	1m 59s
E2E (selfhost 9of10)	1m 8s
E2E (selfhost 3of10)	1m 25s
E2E (selfhost 7of10)	1m 20s
E2E (cloud 10of16)	2m 31s
E2E (cloud 5of16)	2m 18s
E2E (selfhost 10of10)	1m 15s
E2E (cloud 9of16)	1m 58s
E2E (selfhost 8of10)	1m 27s
E2E (cloud 16of16)	2m 29s
E2E (cloud 12of16)	2m 10s
E2E (cloud 11of16)	1m 58s
E2E (selfhost 1of10)	1m 41s
E2E (cloud 13of16)	1m 45s
E2E (cloud 14of16)	1m 59s
E2E (selfhost 2of10)	1m 0s
Cloud evaluated closure	50s
Desktop smoke build	48s
Self-host Docker image	1m 5s
	55m 23s