python-ci.yml

name: CI 

on:
  push:
    branches: [ master, main ]
    tags: [ '*' ]
  pull_request:
    branches: [ master, main ]
  workflow_dispatch:

jobs:
  test:
    name: Run tests
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ["3.8", "3.9", "3.10", "3.11"]
    steps:
      - name: Checkout repository
        uses: actions/checkout@v4

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}

      - name: Install dependencies
        run: |
          sudo apt-get update
          sudo apt-get install -y samtools
          python -m pip install --upgrade pip
          python -m pip install build
          python -m pip install .
          python -m pip install pytest

      - name: Run pytest
        run: pytest -q tests/test_mutview.py