diff --git a/packages/app/src/cli/models/extensions/specification.ts b/packages/app/src/cli/models/extensions/specification.ts
index d9e9256d642..247eacf44da 100644
--- a/packages/app/src/cli/models/extensions/specification.ts
+++ b/packages/app/src/cli/models/extensions/specification.ts
@@ -26,9 +26,14 @@ export type ExtensionFeature =
 
 export type TransformationConfig = Record<string, string>
 
+export interface TransformRemoteToLocalOptions {
+  readonly flags?: Flag[]
+  readonly module?: {readonly handle: string}
+}
+
 export interface CustomTransformationConfig {
   forward?: (obj: object, appConfiguration: AppConfiguration, options?: {flags?: Flag[]}) => object
-  reverse?: (obj: object, options?: {flags?: Flag[]}) => object
+  reverse?: (obj: object, options?: TransformRemoteToLocalOptions) => object
 }
 
 type ExtensionExperience = 'extension' | 'configuration'
@@ -119,7 +124,7 @@ export interface ExtensionSpecification<TConfiguration extends BaseConfigType =
    * @param options - Additional options to be used in the transformation
    * @returns Transformed configuration to use in place of the platform provided content
    */
-  transformRemoteToLocal?: (remoteContent: object, options?: {flags?: Flag[]}) => object
+  transformRemoteToLocal?: (remoteContent: object, options?: TransformRemoteToLocalOptions) => object
 
   uidStrategy: UidStrategy
 
diff --git a/packages/app/src/cli/services/app/select-app.ts b/packages/app/src/cli/services/app/select-app.ts
index 915e88933b3..1213f0a2326 100644
--- a/packages/app/src/cli/services/app/select-app.ts
+++ b/packages/app/src/cli/services/app/select-app.ts
@@ -68,7 +68,10 @@ export function remoteAppConfigurationExtensionContent(
     const config = module.config
     if (!config) return
 
-    remoteAppConfig = deepMergeObjects(remoteAppConfig, configSpec.transformRemoteToLocal?.(config, {flags}) ?? config)
+    remoteAppConfig = deepMergeObjects(
+      remoteAppConfig,
+      configSpec.transformRemoteToLocal?.(config, {flags, module: {handle: module.registrationTitle}}) ?? config,
+    )
   })
 
   return {...remoteAppConfig}
diff --git a/packages/app/src/cli/services/context/deploy-identifier-matching.test.ts b/packages/app/src/cli/services/context/deploy-identifier-matching.test.ts
index 1b24ebfc74b..8227d245085 100644
--- a/packages/app/src/cli/services/context/deploy-identifier-matching.test.ts
+++ b/packages/app/src/cli/services/context/deploy-identifier-matching.test.ts
@@ -13,7 +13,7 @@ import {
 } from '../../models/app/app.test-data.js'
 import {OrganizationApp} from '../../models/organization.js'
 import {ExtensionInstance} from '../../models/extensions/extension-instance.js'
-import {BaseConfigType} from '../../models/extensions/schemas.js'
+import {BaseConfigType, BaseSchemaWithoutHandle} from '../../models/extensions/schemas.js'
 import {createConfigExtensionSpecification} from '../../models/extensions/specification.js'
 import {AppModuleVersion, DeveloperPlatformClient} from '../../utilities/developer-platform-client.js'
 import {deployOrReleaseConfirmationPrompt} from '../../prompts/deploy-release.js'
@@ -623,6 +623,63 @@ describe('classifyDeployExtensionChanges', () => {
 })
 
 describe('ensureDeployIdentifiersFromAppVersion', () => {
+  test('passes each module handle to a config reverse transform without changing its output', async () => {
+    const configuration: BaseConfigType & {synthetic_config: {enabled: boolean}} = {synthetic_config: {enabled: true}}
+    const reverse = vi.fn((content: object) => content)
+    const specification = createConfigExtensionSpecification<BaseConfigType>({
+      identifier: 'synthetic_config',
+      schema: BaseSchemaWithoutHandle.extend({synthetic_config: zod.object({enabled: zod.boolean()})}),
+      transformConfig: {forward: (content) => content, reverse},
+    })
+    const extension = new ExtensionInstance<BaseConfigType>({
+      configuration,
+      configurationPath: 'shopify.app.toml',
+      directory: '/app',
+      specification,
+    })
+    extension.handle = 'Local_Module_Handle'
+    const app = testApp({
+      ...APP,
+      allExtensions: [extension],
+      specifications: [specification],
+    })
+    const remote: AppModuleVersion = {
+      registrationId: extension.uid,
+      registrationUuid: 'synthetic-uuid',
+      registrationTitle: 'Remote_Module_Handle',
+      type: specification.identifier,
+      config: configuration,
+      specification: {
+        identifier: specification.identifier,
+        name: 'Synthetic config',
+        experience: 'configuration',
+        options: {managementExperience: 'cli'},
+      },
+    }
+
+    await ensureDeployIdentifiersFromAppVersion(deployOptions({app, activeAppVersion: {appModuleVersions: [remote]}}))
+
+    expect(reverse).toHaveBeenCalledTimes(2)
+    expect(reverse).toHaveBeenNthCalledWith(1, configuration, {
+      flags: app.remoteFlags,
+      module: {handle: extension.handle},
+    })
+    expect(reverse).toHaveBeenNthCalledWith(2, configuration, {
+      flags: app.remoteFlags,
+      module: {handle: remote.registrationTitle},
+    })
+    expect(deployOrReleaseConfirmationPrompt).toHaveBeenLastCalledWith(
+      expect.objectContaining({
+        configExtensionIdentifiersBreakdown: {
+          existingFieldNames: ['synthetic_config'],
+          existingUpdatedFieldNames: [],
+          newFieldNames: [],
+          deletedFieldNames: [],
+        },
+      }),
+    )
+  })
+
   test('prompts with the existing UI breakdown shape and returns deploy identifiers', async () => {
     const identifiers = await ensureDeployIdentifiersFromAppVersion(
       deployOptions({
diff --git a/packages/app/src/cli/services/context/deploy-identifier-matching.ts b/packages/app/src/cli/services/context/deploy-identifier-matching.ts
index 04236f1173d..4b2bbf2fb3b 100644
--- a/packages/app/src/cli/services/context/deploy-identifier-matching.ts
+++ b/packages/app/src/cli/services/context/deploy-identifier-matching.ts
@@ -189,8 +189,10 @@ async function localAppConfigurationExtensionContent(app: AppInterface, apiKey:
     // eslint-disable-next-line no-await-in-loop
     const deployConfig = await extension.deployConfig({apiKey, appConfiguration: app.configuration})
     const localConfig =
-      extension.specification.transformRemoteToLocal?.(deployConfig ?? {}, {flags: app.remoteFlags}) ??
-      extension.configuration
+      extension.specification.transformRemoteToLocal?.(deployConfig ?? {}, {
+        flags: app.remoteFlags,
+        module: {handle: extension.handle},
+      }) ?? extension.configuration
     appConfig = deepMergeObjects(appConfig, localConfig)
   }