diff --git a/content/results_abundance.py b/content/results_abundance.py index 3740bcc..a7ff453 100644 --- a/content/results_abundance.py +++ b/content/results_abundance.py @@ -1,7 +1,6 @@ """Abundance (ProteomicsLFQ) Results Page.""" import streamlit as st import pandas as pd -import numpy as np from pathlib import Path from src.common.common import page_setup from src.common.results_helpers import get_workflow_dir, get_abundance_data @@ -71,10 +70,7 @@ # Get sample columns (between stats and PeptideSequence) sample_cols = [c for c in pivot_df.columns if c not in ["ProteinName", "log2FC", "p-value", "PeptideSequence"]] - # Create bar chart column with log2-transformed values - pivot_df["Intensity"] = pivot_df[sample_cols].apply( - lambda row: [np.log2(v + 1) for v in row], axis=1 - ) + pivot_df["Intensity"] = pivot_df[sample_cols].apply(list, axis=1) # Reorder columns: place Intensity after p-value display_cols = ["ProteinName", "log2FC", "p-value", "Intensity"] + sample_cols + ["PeptideSequence"] @@ -85,9 +81,8 @@ column_config={ "Intensity": st.column_config.BarChartColumn( "Intensity", - help="Sample intensities (log2 scale)", + help="Raw sample intensities", width="small", - y_min=0, ), }, use_container_width=True,