NodeNormalization/config.json at main · NCATSTranslator/NodeNormalization · GitHub

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{
    "compendium_directory": "comps",
    "conflation_directory": "confs",
    "redis_host": "127.0.0.1",
    "redis_port": 6379,
    "redis_password": "",
    "data_files": [
        "AnatomicalEntity.txt",
        "BiologicalProcess.txt",
        "Cell.txt",
        "CellLine.txt",
        "CellularComponent.txt",
        "ChemicalEntity.txt",
        "ChemicalMixture.txt",
        "ComplexMolecularMixture.txt",
        "Disease.txt",
        "Drug.txt",
        "GeneFamily.txt",
        "Gene.txt",
        "GrossAnatomicalStructure.txt",
        "MacromolecularComplex.txt",
        "MolecularActivity.txt",
        "MolecularMixture.txt",
        "OrganismTaxon.txt",
        "Pathway.txt",
        "PhenotypicFeature.txt",
        "Polypeptide.txt",
        "Protein.txt",
        "Publication.txt",
        "SmallMolecule.txt",
        "umls.txt"
    ],
    "biolink_version": "v4.4.3",
    "test_mode": 0,
    "debug_messages": 0,
    "conflations": [
        {
            "types": ["biolink:Gene", "biolink:Protein"],
            "file": "GeneProtein.txt",
            "redis_db": "gene_protein_db"
        },
        {
            "types": ["biolink:ChemicalEntity", "biolink:Drug"],
            "file": "DrugChemical.txt",
            "redis_db": "chemical_drug_db"
        }
    ],
    "preferred_name_boost_prefixes": {
        "biolink:ChemicalEntity": [
            "DRUGBANK",
            "DrugCentral",
            "CHEBI",
            "MESH",
            "CHEMBL.COMPOUND",
            "GTOPDB",
            "HMDB",
            "RXCUI",
            "PUBCHEM.COMPOUND"
        ]
    },
    "demote_labels_longer_than": 15
}