Issues

• Switch to uv from poetry

  Knowledge-Graph-Hub/kg-phenio#194 · Filter by author caufieldjh opened on Feb 18, 2026

• Update transforms to use koza 2.0.0

  Knowledge-Graph-Hub/kg-phenio#186 · Filter by author caufieldjh opened on Sep 12, 2025

• Invalid infores IDs

  Knowledge-Graph-Hub/kg-phenio#184 · Filter by author kevinschaper opened on Jun 7, 2025
  1

• specific synonym type fields are getting plural names (exact_synonyms instead of exact_synonym)

  Knowledge-Graph-Hub/kg-phenio#183 · Filter by author kevinschaper opened on May 27, 2025
  1

• Include curated_content_resource and database_cross_reference properties from MONDO

  Knowledge-Graph-Hub/kg-phenio#176 · Filter by author caufieldjh opened on May 19, 2025
  4

• Add predicate validity check

  Knowledge-Graph-Hub/kg-phenio#169 · Filter by author kevinschaper opened on Mar 27, 2025

• Use CURIE as name when name is not available

  Knowledge-Graph-Hub/kg-phenio#153 · Filter by author caufieldjh opened on Aug 1, 2024

• URLs to KGX TSV tar.gz files in two builds are 404

  Knowledge-Graph-Hub/kg-phenio#132 · Filter by author justaddcoffee opened on Jan 24, 2024
  1

• Synchronize with semsql build (i.e., do it here)

  Knowledge-Graph-Hub/kg-phenio#113 · Filter by author caufieldjh opened on Aug 7, 2023

• Invalid predicates

  Knowledge-Graph-Hub/kg-phenio#103 · Filter by author kevinschaper opened on May 19, 2023
  3

• Missing edge categories?

  Knowledge-Graph-Hub/kg-phenio#88 · Filter by author caufieldjh opened on Jan 30, 2023
  6

• Compressed graph incorrectly includes relative local path

  Knowledge-Graph-Hub/kg-phenio#77 · Filter by author caufieldjh opened on Nov 4, 2022

• Include WBbt & FBbt anatomy ontologies

  Knowledge-Graph-Hub/kg-phenio#64 · Filter by author kevinschaper opened on Sep 15, 2022
  7

• Odd objects in ZP has_part edges

  Knowledge-Graph-Hub/kg-phenio#56 · Filter by author kevinschaper opened on Jun 28, 2022
  4

• define workflow for feeding new HP-MP link predictions to Nico et al for manual curation/inspection, and incorporation back into Phenio

  Knowledge-Graph-Hub/kg-phenio#55 · Filter by author justaddcoffee opened on Jun 24, 2022
  6

• Question about graph embedding spaces

  Knowledge-Graph-Hub/kg-phenio#53 · Filter by author matentzn opened on Jun 19, 2022
  8

• Add more subq patterns during Phenio transform

  Knowledge-Graph-Hub/kg-phenio#50 · Filter by author caufieldjh opened on Jun 10, 2022
  1

• How is Upheno being used in KG-Phenio?

  Knowledge-Graph-Hub/kg-phenio#40 · Filter by author caufieldjh opened on May 23, 2022
  5

• Scheduled NEAT run fails due to ~~ValueError~~ KeyError when attempting to load graph file(s)

  Knowledge-Graph-Hub/kg-phenio#31 · Filter by author caufieldjh opened on May 3, 2022
  8

• Implement GNN for MP-HP link prediction task in Embiggen

  Knowledge-Graph-Hub/kg-phenio#20 · Filter by author justaddcoffee opened on Apr 11, 2022

• Generate and add function for ingesting SSSOM mappings

  Knowledge-Graph-Hub/kg-phenio#13 · Filter by author caufieldjh opened on Mar 24, 2022

• logistic regression (baseline)

  Knowledge-Graph-Hub/kg-phenio#11 · Filter by author justaddcoffee opened on Mar 11, 2022