The #180 id↔label cleanup cleared 167 drift rows by remapping to the nearest valid ontology term, but some are deliberately broad or approximate and a domain curator could improve them:
Obsolete-GO remaps (GO offers no official replacement; chosen nearest current term):
GO:0055114 oxidation-reduction process → GO:0016491 oxidoreductase activity (a BP→MF shift)
GO:0071704 organic substance metabolic → GO:0008152 metabolic process (generic parent)
GO:1901575/GO:0019439 catabolic → GO:0009056 catabolic process (generic parent)
GO:0051704 multi-organism process → GO:0044419 interspecies-interaction process
GO:0051238 sequestering of metal ion → GO:0140487 metal ion sequestering activity
GO:0015103 inorganic anion transporter → GO:0008509 monoatomic anion transmembrane transporter activity
Bucket A — intended term absent from the ontology, remapped to nearest existing term (the specific concept is retained in preferred_term):
- lead/zinc sulfide →
CHEBI:46718 sulfide salt
- organic matter →
CHEBI:50860 organic molecular entity; humic acid → CHEBI:64709 organic acid; yeast extract → CHEBI:60004 mixture
- phyllosphere →
ENVO:01001001 plant-associated environment; anaerobic environment → ENVO:01001825
- Stenotrophomonas goyi →
NCBITaxon:40323 (genus)
Options: accept as-is (valid + preferred_term keeps specificity), pick better GO/CHEBI/ENVO terms, request/mint terms (e.g. via METPO), or drop the low-value generic annotations.
The #180 id↔label cleanup cleared 167 drift rows by remapping to the nearest valid ontology term, but some are deliberately broad or approximate and a domain curator could improve them:
Obsolete-GO remaps (GO offers no official replacement; chosen nearest current term):
GO:0055114oxidation-reduction process →GO:0016491oxidoreductase activity (a BP→MF shift)GO:0071704organic substance metabolic →GO:0008152metabolic process (generic parent)GO:1901575/GO:0019439catabolic →GO:0009056catabolic process (generic parent)GO:0051704multi-organism process →GO:0044419interspecies-interaction processGO:0051238sequestering of metal ion →GO:0140487metal ion sequestering activityGO:0015103inorganic anion transporter →GO:0008509monoatomic anion transmembrane transporter activityBucket A — intended term absent from the ontology, remapped to nearest existing term (the specific concept is retained in
preferred_term):CHEBI:46718sulfide saltCHEBI:50860organic molecular entity; humic acid →CHEBI:64709organic acid; yeast extract →CHEBI:60004mixtureENVO:01001001plant-associated environment; anaerobic environment →ENVO:01001825NCBITaxon:40323(genus)Options: accept as-is (valid +
preferred_termkeeps specificity), pick better GO/CHEBI/ENVO terms, request/mint terms (e.g. via METPO), or drop the low-value generic annotations.