From df574cb5205acd359568cc7fa3824f95c6489875 Mon Sep 17 00:00:00 2001 From: "renovate[bot]" <29139614+renovate[bot]@users.noreply.github.com> Date: Fri, 7 Aug 2026 00:58:48 +0000 Subject: [PATCH] chore(deps): update repository maintenance --- .github/workflows/create_github_release.yaml | 4 ++-- .github/workflows/draft-paper.yaml | 2 +- .github/workflows/github_release.yml | 4 ++-- .github/workflows/pkgdown.yml | 4 ++-- .github/workflows/rworkflows.yml | 2 +- .github/workflows/test-coverage.yaml | 4 ++-- .github/workflows/test-coverage.yml | 4 ++-- .pre-commit-config.yaml | 4 ++-- 8 files changed, 14 insertions(+), 14 deletions(-) diff --git a/.github/workflows/create_github_release.yaml b/.github/workflows/create_github_release.yaml index 64500d4..104dee2 100644 --- a/.github/workflows/create_github_release.yaml +++ b/.github/workflows/create_github_release.yaml @@ -48,13 +48,13 @@ jobs: libharfbuzz-dev libfribidi-dev \ pandoc - name: Setup R - uses: r-lib/actions/setup-r@6f6e5bc62fba3a704f74e7ad7ef7676c5c6a2590 # v2.11.4 + uses: r-lib/actions/setup-r@d3c5be51b12e724e68f33216ca3c148b66d5f0b6 # v2.12.1 with: r-version: ${{ matrix.r_version }} use-public-rspm: true id: r - name: Install dependencies - uses: r-lib/actions/setup-renv@6f6e5bc62fba3a704f74e7ad7ef7676c5c6a2590 # v2.11.4 + uses: r-lib/actions/setup-renv@d3c5be51b12e724e68f33216ca3c148b66d5f0b6 # v2.12.1 - name: Build Package run: R CMD build . - name: Rename Package diff --git a/.github/workflows/draft-paper.yaml b/.github/workflows/draft-paper.yaml index b988418..7486210 100644 --- a/.github/workflows/draft-paper.yaml +++ b/.github/workflows/draft-paper.yaml @@ -13,7 +13,7 @@ jobs: - name: Checkout uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7 - name: Build draft PDF - uses: openjournals/openjournals-draft-action@master + uses: openjournals/openjournals-draft-action@85a18372e48f551d8af9ddb7a747de685fbbb01c # master with: journal: joss # This should be the path to the paper within your repo. diff --git a/.github/workflows/github_release.yml b/.github/workflows/github_release.yml index ef0e96c..a7efc49 100644 --- a/.github/workflows/github_release.yml +++ b/.github/workflows/github_release.yml @@ -56,13 +56,13 @@ jobs: libudunits2-dev libharfbuzz-dev libfribidi-dev \ pandoc - name: Setup R - uses: r-lib/actions/setup-r@6f6e5bc62fba3a704f74e7ad7ef7676c5c6a2590 # v2.11.4 + uses: r-lib/actions/setup-r@d3c5be51b12e724e68f33216ca3c148b66d5f0b6 # v2.12.1 with: r-version: ${{ matrix.r_version }} use-public-rspm: true id: r - name: Install dependencies - uses: r-lib/actions/setup-renv@6f6e5bc62fba3a704f74e7ad7ef7676c5c6a2590 # v2.11.4 + uses: r-lib/actions/setup-renv@d3c5be51b12e724e68f33216ca3c148b66d5f0b6 # v2.12.1 - name: Build Package run: R CMD build . - name: Rename Package diff --git a/.github/workflows/pkgdown.yml b/.github/workflows/pkgdown.yml index f05cc90..7264288 100644 --- a/.github/workflows/pkgdown.yml +++ b/.github/workflows/pkgdown.yml @@ -21,7 +21,7 @@ jobs: - name: Checkout uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 - name: Setup R - uses: r-lib/actions/setup-r@6f6e5bc62fba3a704f74e7ad7ef7676c5c6a2590 # v2.11.4 + uses: r-lib/actions/setup-r@d3c5be51b12e724e68f33216ca3c148b66d5f0b6 # v2.12.1 with: r-version: renv - name: Install system dependencies @@ -33,7 +33,7 @@ jobs: libudunits2-dev libharfbuzz-dev libfribidi-dev \ pandoc - name: Install dependencies - uses: r-lib/actions/setup-renv@6f6e5bc62fba3a704f74e7ad7ef7676c5c6a2590 # v2.11.4 + uses: r-lib/actions/setup-renv@d3c5be51b12e724e68f33216ca3c148b66d5f0b6 # v2.12.1 - name: Build pkgdown site run: Rscript -e 'pkgdown::build_site_github_pages(install = TRUE)' - name: Deploy pkgdown site diff --git a/.github/workflows/rworkflows.yml b/.github/workflows/rworkflows.yml index 8a40cb3..75580e1 100644 --- a/.github/workflows/rworkflows.yml +++ b/.github/workflows/rworkflows.yml @@ -39,7 +39,7 @@ jobs: bioc: devel r: auto steps: - - uses: neurogenomics/rworkflows@master + - uses: neurogenomics/rworkflows@6aaf49348859a96eea744b1907b1fe850e3ead5e # master with: run_bioccheck: ${{ true }} run_rcmdcheck: ${{ true }} diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml index e47c9a9..91a642e 100644 --- a/.github/workflows/test-coverage.yaml +++ b/.github/workflows/test-coverage.yaml @@ -17,11 +17,11 @@ jobs: steps: - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7 - - uses: r-lib/actions/setup-r@6f6e5bc62fba3a704f74e7ad7ef7676c5c6a2590 # v2 + - uses: r-lib/actions/setup-r@d3c5be51b12e724e68f33216ca3c148b66d5f0b6 # v2 with: use-public-rspm: true - - uses: r-lib/actions/setup-r-dependencies@6f6e5bc62fba3a704f74e7ad7ef7676c5c6a2590 # v2 + - uses: r-lib/actions/setup-r-dependencies@d3c5be51b12e724e68f33216ca3c148b66d5f0b6 # v2 with: extra-packages: any::covr needs: coverage diff --git a/.github/workflows/test-coverage.yml b/.github/workflows/test-coverage.yml index 24eaa6f..5d6b7b7 100644 --- a/.github/workflows/test-coverage.yml +++ b/.github/workflows/test-coverage.yml @@ -23,11 +23,11 @@ jobs: steps: - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 - - uses: r-lib/actions/setup-r@6f6e5bc62fba3a704f74e7ad7ef7676c5c6a2590 # v2.11.4 + - uses: r-lib/actions/setup-r@d3c5be51b12e724e68f33216ca3c148b66d5f0b6 # v2.12.1 with: use-public-rspm: true - - uses: r-lib/actions/setup-r-dependencies@6f6e5bc62fba3a704f74e7ad7ef7676c5c6a2590 # v2.11.4 + - uses: r-lib/actions/setup-r-dependencies@d3c5be51b12e724e68f33216ca3c148b66d5f0b6 # v2.12.1 with: extra-packages: any::covr needs: coverage diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index ffd438c..4e040b2 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -67,7 +67,7 @@ repos: - --branch - RELEASE.* - repo: https://github.com/compilerla/conventional-pre-commit - rev: v4.3.0 + rev: v4.4.0 hooks: - args: - build @@ -86,7 +86,7 @@ repos: stages: - commit-msg - repo: https://github.com/Lucas-C/pre-commit-hooks - rev: v1.5.5 + rev: v1.5.6 hooks: - id: forbid-crlf - id: remove-crlf