diff --git a/.claude/skills/mapping-audit/SKILL.md b/.claude/skills/mapping-audit/SKILL.md
index 7bb070b..de15c83 100644
--- a/.claude/skills/mapping-audit/SKILL.md
+++ b/.claude/skills/mapping-audit/SKILL.md
@@ -34,7 +34,7 @@ wants to know if any existing mapping is now stale.
   CL ID's current marker-axiom support as `confirmed` (directly asserted),
   `inferred_only`, or `no_marker_axiom`, from
   `reports/cl_pro_relationships.tsv`.
-- `reports/literature/*.md` and `reports/pro_marker_species_support.tsv` — the
+- `literature/evidence.tsv` (prefer `verified = yes` rows) and `reports/pro_marker_species_support.tsv` — the
   literature side of the evidence a mapping might rely on, especially for
   species-specific marker claims.
 - `uv run soulcap-match --req-excl ... --ideal-excl ... --req-pheno ...
diff --git a/.claude/skills/pro-marker-species-support/SKILL.md b/.claude/skills/pro-marker-species-support/SKILL.md
index ce4805b..ca5aa4b 100644
--- a/.claude/skills/pro-marker-species-support/SKILL.md
+++ b/.claude/skills/pro-marker-species-support/SKILL.md
@@ -30,11 +30,14 @@ axioms are added.
   already carries a species qualifier (`(mouse)`/`(human)`). Run via
   `uv run python -c "..."` or a short driver script — not a CLI (deliberately;
   see the module docstring).
-- `reports/literature/*.md` — the Milestone 2 literature reports. **Check
-  these first, always.** They already contain verbatim-quoted, hook-validated
-  evidence for 7 cell families (NK, ILC, DC, iNKT, T cell, B cell, gdT/MAIT),
-  and reusing a quote from here is strictly better than a fresh search: it's
-  already vetted, and it's free.
+- `literature/evidence.tsv` — the Milestone 2 evidence table (one row per
+  cell type, marker and quote). **Check it first, always.** It covers 7 cell
+  families (NK, ILC, DC, iNKT, T cell, B cell, gdT/MAIT). Prefer rows with
+  `verified = yes` (quote matched exactly in the paper's full text); treat
+  `no` rows as unconfirmed and don't reuse them without checking the paper.
+  Reusing a verified quote is strictly better than a fresh search. The
+  original narrative reports are archived in
+  `archive/2026-09_literature_narratives/` for provenance only.
 - `data/citation_mgr.csv` (synced Citation Mgr tab) — per-family seed papers
   for families without an M2 report yet (as of this run: basophil,
   granulocyte, mast cell, monocyte, neutrophil, MDSC).
@@ -72,9 +75,10 @@ refreshing rather than re-running everything.
 
 For each pair (or each CL cell type's group of pairs, sharing a seed set):
 
-1. **Search the relevant `reports/literature/*.md` file** for the marker's
-   CD synonym or PR label. If a verbatim blockquote already covers it, reuse
-   that quote and citation directly — `evidence_source: m2_literature_report`.
+1. **Search `literature/evidence.tsv`** (`marker_token`, `cell_type_label`)
+   for the marker's CD synonym or PR label. If a `verified = yes` row covers
+   it, reuse that quote and citation directly —
+   `evidence_source: m2_literature_report`, `source_ref: literature/evidence.tsv#<evidence_id>`.
 2. **If Asta is reachable and no M2 coverage exists**, run `citation-traversal`
    seeded from `data/citation_mgr.csv`'s row for that family —
    `evidence_source: citation_traversal`.
@@ -124,7 +128,7 @@ Append to `reports/pro_marker_species_support.tsv`
 | `evidence_source` | `m2_literature_report` / `citation_traversal` / `europepmc_search` / `none`. |
 | `citation` | Author/year/PMID/DOI, plus a trailing `-- ` caveat clause when the quote's context doesn't exactly match the pair's cell type/subset (e.g. a naive-T marker's only evidence coming from a Treg paper) — say so rather than let the row imply a cleaner match than it is. |
 | `quote` | The verbatim substring itself. |
-| `source_ref` | `reports/literature/<file>.md` for M2 reuse, an EuropePMC article URL for a fresh search, or `reports/citation_traversal/<run_id>/` for a traversal — or, for `insufficient_evidence`, a one-line note on what was tried. |
+| `source_ref` | `literature/evidence.tsv#<evidence_id>` for M2 reuse (older rows cite `archive/2026-09_literature_narratives/<file>.md`), an EuropePMC article URL for a fresh search, or `reports/citation_traversal/<run_id>/` for a traversal — or, for `insufficient_evidence`, a one-line note on what was tried. |
 
 ## Step 5 — flag real findings
 
diff --git a/.claude/skills/roadmap-status-sync/SKILL.md b/.claude/skills/roadmap-status-sync/SKILL.md
index 7b7a949..93f3c2e 100644
--- a/.claude/skills/roadmap-status-sync/SKILL.md
+++ b/.claude/skills/roadmap-status-sync/SKILL.md
@@ -24,7 +24,7 @@ changes a milestone's completion state.
 - `uv run soulcap-sync` — re-pull the Google Sheet before checking anything
   that depends on its current column set (this is a network call and
   overwrites the gitignored `data/` cache — safe, but mention you're doing it).
-- File/row counts under `marker_mappings/`, `reports/`, `reports/literature/`.
+- File/row counts under `marker_mappings/`, `reports/`, `literature/`.
 - `gh issue view <N>` — for the CL term corrections table, whose "Status"
   column tracks upstream `obophenotype/cell-ontology` issues that this repo
   doesn't control the resolution of.
@@ -37,7 +37,7 @@ disk, every time:
 | Milestone | Evidence to check | How to read it |
 |---|---|---|
 | M1 — marker → protein → gene | `marker_mappings/marker_protein_gene.csv` exists and has rows | Empty/missing → ⬜. Has rows but visibly incomplete (spot-check a few marker tokens from `data/marker_combinations.csv` against it) → 🟡. Covers essentially all distinct tokens → ✅. |
-| M2 — literature support | Count `reports/literature/*.md` files against the distinct `Category` values in `data/citation_mgr.csv` (re-sync first if `data/` looks stale) | 0 files → ⬜. Some but not all categories covered → 🟡 (state the fraction, e.g. "8/14"). All categories covered → ✅. |
+| M2 — literature support | Count distinct `cell_type_label` families in `literature/evidence.tsv` against the distinct `Category` values in `data/citation_mgr.csv` (re-sync first if `data/` looks stale); also report how many rows are `verified = yes` | 0 files → ⬜. Some but not all categories covered → 🟡 (state the fraction, e.g. "8/14"). All categories covered → ✅. |
 | M3 — audit curated mappings | Whether the Google Sheet now has dedicated broad/exact-match and comment columns beyond today's `Type of Match` (assay-type, not CL-match-type), `OLS CL identifier`, and `CL Mapping Notes` — check the freshly-synced sheet's actual column headers, don't assume from the column *names* alone (`Type of Match` sounds relevant but is not the same field per the roadmap's own note) | Columns still absent → stays ⛔, but if the `mapping-audit` skill has since made a drift/evidence-based audit possible without those columns, say so explicitly rather than leaving it a flat "blocked with nothing happening." | 
 | M4 — candidate mappings | Row count in `reports/candidate_cl_mappings.sssom.tsv` (minus header) against total rows in `data/marker_combinations.csv` (minus header) | Partial coverage → 🟡 with the fraction. All SOULCAP rows covered (including documented "no reasonable match" cases logged in `gaps.tsv`, which count as resolved, not missing) → ✅. |
 | CL term corrections table | `gh issue view <N>` for each row's linked repo issue, and the upstream `obophenotype/cell-ontology` issue if linked | If the upstream issue is closed/merged, the table's "Status" cell is stale — update it. |
@@ -72,7 +72,7 @@ same way when an upstream issue has moved.
 - M2's category list comes from `data/citation_mgr.csv`'s `Category` column,
   which mixes true cell-type families (NK cell, B cell, monocyte, ...) with at
   least one cross-cutting method category (`immunoprofiling`) that doesn't map
-  to a single `reports/literature/*.md` file — don't count it against M2's
+  to a single evidence family — don't count it against M2's
   denominator; use judgment on any other ambiguous category the same way.
 - A "done" `data/` count is only as fresh as the last `uv run soulcap-sync` —
   always re-sync before trusting M2/M3/M4 numbers if the last sync date is
diff --git a/.claude/skills/soulcap-cl-matching/SKILL.md b/.claude/skills/soulcap-cl-matching/SKILL.md
index c6b819b..a73fec2 100644
--- a/.claude/skills/soulcap-cl-matching/SKILL.md
+++ b/.claude/skills/soulcap-cl-matching/SKILL.md
@@ -1,6 +1,6 @@
 ---
 name: soulcap-cl-matching
-description: Propose a Cell Ontology (CL) match for a SOULCAP cell type (one, several, or all of them) using both marker-axiom scoring and name-based lexical search, cross-checking the two before trusting either, and writing the result into reports/candidate_cl_mappings.md with rationale and evidence. Invoke when asked to map/match a SOULCAP cell type to CL, propose a CL ID, or extend Milestone 4 candidate mappings.
+description: Propose a Cell Ontology (CL) match for a SOULCAP cell type (one, several, or all of them) using both marker-axiom scoring and name-based lexical search, cross-checking the two before trusting either, and recording the result as a row in mappings/curated_mappings.tsv (then regenerating reports with soulcap-sssom) with rationale and evidence. Invoke when asked to map/match a SOULCAP cell type to CL, propose a CL ID, or extend Milestone 4 candidate mappings.
 ---
 
 You propose SOULCAP → Cell Ontology (CL) mappings the way they were actually
@@ -109,32 +109,44 @@ because it needed an OR-group marker check
 
 ## Step 4 — write the result
 
-Append an entry to `reports/candidate_cl_mappings.md` following the existing
-format (one `##` section per cell type or closely related family):
+Record the decision as a row in
+[`mappings/curated_mappings.tsv`](../../../mappings/curated_mappings.tsv), then
+regenerate the outputs:
 
-```markdown
-## <Abbreviation> — <Full Name>
-
-**SOULCAP definition:** <marker columns, briefly>
-
-| Field | Value |
-|---|---|
-| Proposed CL term | <label> |
-| Proposed CL ID | `CL:XXXXXXX` |
-| Match type | Exact / Broad |
-
-**Rationale:** <why this term, referencing marker matches AND/OR lexical
-agreement, and calling out anything that had to be verified by hand>
-
-**Evidence:** <marker→gene table entries, literature quotes if available from
-reports/literature/, `soulcap-match` rank/score>
+```bash
+uv run soulcap-sssom
 ```
 
-If a candidate is genuinely uncertain (e.g. the SOULCAP profile doesn't test
-a marker needed to distinguish two otherwise-equal CL candidates), say so
-explicitly — mark it **tentative** and name the alternatives, rather than
-picking one silently. See the `ILCp` entry in `candidate_cl_mappings.md` for
-the pattern.
+This rewrites `reports/candidate_cl_mappings.sssom.tsv`, the readable
+`reports/candidate_cl_mappings.md`, and the provenance sidecar. **Never edit
+`reports/candidate_cl_mappings.md` directly** — it is generated, and hand edits
+are overwritten on the next export. See [mappings/README.md](../../../mappings/README.md)
+for the column rules.
+
+- `subject_id`: the cell type's permanent `SOULCAP:SCnnnnnn` ID from
+  `mappings/soulcap_entities.tsv`. If the cell type has no entity row, stop and
+  ask; never invent or renumber IDs.
+- To change an existing proposal, edit its row; add a new row only for a
+  subject with no proposal yet.
+- `abbreviation`, `subject_label`: as in the entity registry.
+- `cl_id`, `cl_label`: verified via OLS4 (Step 3), exact label.
+- `match_type`: `Exact` (proposed equivalence), `Broad` (CL is broader),
+  `Narrow` (CL is narrower) or `Related`.
+- `uncertain`: set it (and name the alternatives in `note`) when the profile
+  can't distinguish between CL candidates. Don't pick one silently.
+- `review_status`: always `needs_review`. Only a human curator changes it.
+- `note`: the rationale — why this term, marker matches and/or lexical
+  agreement, and anything verified by hand. Include the `soulcap-match`
+  rank/score.
+- `lexical_evidence`, `literature_evidence`, `curator_evidence`: structured
+  evidence, kept separate. Literature evidence must be verbatim quotes with
+  PMID/DOI, citing rows of `literature/evidence.tsv` by `evidence_id` (prefer
+  `verified = yes`); leave it blank rather than invent a citation.
+- `evidence_source`: where the evidence lives (file path or URL).
+- Leave `evidence_override` blank; it is historical provenance only.
+
+Marker evidence (matches, contradictions, unknowns) is computed by
+`soulcap-sssom` from the source profile — don't write it by hand.
 
 ## Step 5 — flag anything wrong in either resource
 
diff --git a/CLAUDE.md b/CLAUDE.md
index d2553f9..742e102 100644
--- a/CLAUDE.md
+++ b/CLAUDE.md
@@ -55,16 +55,21 @@ AST in `marker_syntax.py`, compiled/evaluated by `phenotype.py`.
 
 | Path | Purpose |
 |------|---------|
-| [README.md](README.md) | Project overview + setup (UV, Asta token). |
+| [README.md](README.md) | Short overview: aims, pipeline diagram, key files, mapping machinery (code vs skills vs human review), outputs, quick start. |
 | `CLAUDE.md` | This file — guidance for Claude. |
 | [ROADMAP.md](ROADMAP.md) | Planned work / milestones and their deliverables and dependencies. |
-| [Notes.md](Notes.md) | Scratch notes on data sources + a marker-syntax quick reference. |
 | [MARKER_SYNTAX.md](MARKER_SYNTAX.md) | **Canonical spec** of the marker expression language (human-readable guide + EBNF). Cite this for anything parsing/validating marker strings. |
-| [reports/](reports/) | Analysis reports. `marker_string_issues.md` is the curated review; `marker_validation.md` is **auto-generated** by the EBNF validator on each sync. `cl_pro_relationships.md`/`.tsv` are **auto-generated** by `soulcap-cl-pro` from Ubergraph. `cl_term_issues.md` tracks proposed CL corrections found during mapping work. `candidate_cl_mappings.md` is the Milestone 4 deliverable — proposed SOULCAP→CL mappings with rationale and evidence. `candidate_cl_mappings_batch.tsv`/`candidate_cl_mappings_agreement.tsv` are **auto-generated** by `soulcap-match --batch [--lexical]` (issue #6) — a marker-axiom-only pass and a marker/lexical agreement pass across every SOULCAP cell type; treat as an unreviewed draft shortlist (conflicts must be checked), not curated output. `candidate_cl_mappings.sssom.tsv` is **auto-generated** by `soulcap-sssom` from the curated `CURATED_MAPPINGS` table in `sssom_export.py` (kept in sync by hand with `candidate_cl_mappings.md`) — standard SSSOM format, with `confidence`/`comment` derived from whether the match is backed by a directly-asserted CL marker axiom, an inferred-only one, or none at all (lexical/name match only). `gaps.tsv` is a curated, hand-maintained log of cases where SOULCAP has no reasonable CL match, CL conflicts with a marker panel, CL has an axiom gap, or the sheet itself has a data problem — separate from the mapping table; matching GitHub issues use the `gap` label (`.github/ISSUE_TEMPLATE/mapping_gap.yml`). `pro_marker_species_support.tsv` is the issue #11 deliverable — for each (CL cell type, general PRO marker) pair SOULCAP's mappings actually touch, whether literature supports the marker as human, mouse, or both, or `insufficient_evidence`; built by the `pro-marker-species-support` skill, every quote verified verbatim against its source before writing. `fall_2026_sprint_backlog.md` is the sprint-level breakdown of [ROADMAP.md](ROADMAP.md)'s Fall 2026 (Oct–Dec) working plan, prepared for Dr. Diehl — hand-maintained, not regenerable; update it as items complete or scope is renegotiated, don't treat it as a generated report. New reports go here. `reports/citation_traversal/` holds gitignored, regenerable snippet caches + summaries from the `citation-traversal` skill. |
-| [cell_type_reviews/](cell_type_reviews/README.md) | **One review file per SOULCAP cell type** (tracked, curated — not a regenerable cache): definition, marker→protein, verbatim literature support, CL comparison, proposed verdict, uncertainty flags. Start from `_template.md` and keep the folder README's index in sync. Only reviews flagged **uncertain** go to Dr. Diehl for expert review. Scaffolded 2026-09-23, no reviews written yet; its relationship to the existing `reports/literature/` Milestone 2 output is still being confirmed with Dr. Diehl — see ROADMAP.md before assuming one supersedes the other. |
-| `src/soulcap_cl_mapping/` | All Python code. `sync_sheets.py` → `soulcap-sync`; `marker_syntax.py` → `soulcap-validate` (EBNF validator); `snippet_cache.py` → `soulcap-cache`; `report_validator.py` → `soulcap-validate-report`; `cl_pro.py` → `soulcap-cl-pro` (CL→PR relationships via Ubergraph SPARQL); `cl_match.py` → `soulcap-match` (marker-axiom + lexical CL candidate scoring, single-profile or `--batch`); `oak_match.py` → `soulcap-oak-match` (OAK sqlite-backed lexical/synonym CL search — downloads/caches a local CL database on first use, ~100MB); `sssom_export.py` → `soulcap-sssom` (curated mappings → SSSOM TSV, with confidence derived from CL marker-axiom assertion status); `pro_species_support.py` (scopes CL PRO markers needing species-specificity literature support — no CLI, called as a library from the `pro-marker-species-support` skill); `europepmc_search.py` → `soulcap-europepmc` (free, keyless Europe PMC search — fallback literature source when the Asta MCP server isn't reachable); `pubmed_search.py` → `soulcap-pubmed` (NCBI E-utilities search — reads `PUBMED_API_KEY` from `.env` if set for the higher rate limit, otherwise works keyless; use when a task specifically needs NCBI's own index/query syntax rather than Europe PMC's mirror of it). |
+| [reports/](reports/README.md) | **Current outputs only.** Every file is listed in [reports/README.md](reports/README.md) with its producer and whether it is curated or generated. Curated (hand-maintained): `gaps.tsv`, `cl_term_issues.md`, `marker_string_issues.md`, `pro_marker_species_support.tsv` (issue #11, built by the `pro-marker-species-support` skill), `proposed_marker_fixes.xlsx`, `soulcap_feedback.tsv` (draft feedback for SOULCAP, not yet sent), `candidate_cl_mappings_narrative.md`. Generated (don't hand-edit): `candidate_cl_mappings.md`/`.sssom.tsv` (`soulcap-sssom`, from `mappings/curated_mappings.tsv`), `candidate_cl_mappings_batch.tsv`/`_agreement.tsv` (`soulcap-match --batch [--lexical]`, unreviewed draft shortlists), `audit_*` (`soulcap-audit`), `matcher_evaluation.*` (`soulcap-evaluate`), `marker_resolution_audit.*` (`soulcap-resolution-audit`), `fully_resolved_*` (`soulcap-resolved`), `marker_validation.md` (`soulcap-sync`/`soulcap-validate`), `cl_pro_relationships.md`/`.tsv` (`soulcap-cl-pro`, Ubergraph), `cl_lexical_cache.json` (`soulcap-cache-terms`). `reports/citation_traversal/` holds gitignored snippet caches from the `citation-traversal` skill. |
+| [cell_type_reviews/](cell_type_reviews/README.md) | **One review file per SOULCAP cell type** (tracked, curated — not a regenerable cache): definition, marker→protein, verbatim literature support, CL comparison, proposed verdict, uncertainty flags. Start from `_template.md` and keep the folder README's index in sync. Only reviews flagged **uncertain** go to Dr. Diehl for expert review. Scaffolded 2026-09-23, no reviews written yet; its relationship to the existing [`literature/`](literature/) Milestone 2 output is still being confirmed with Dr. Diehl — see ROADMAP.md before assuming one supersedes the other. |
+| [mappings/](mappings/README.md) | Curated mapping decisions (`curated_mappings.tsv`), permanent local entity IDs (`soulcap_entities.tsv`), and matcher benchmark files. The decision source of truth for this repo. |
+| [marker_mappings/](marker_mappings/README.md) | Token → PRO/UniProt/gene registry (`marker_protein_gene.csv`), per-token resolution policy (`marker_resolution.tsv`), token list, and PRO→UniProt overrides. Tracked, curated. |
+| [literature/](literature/README.md) | Milestone 2 literature evidence. `evidence.tsv` is the curated table (one row per cell type, marker and quote, with a `verified` flag from `soulcap-evidence verify`); `by_cell_type/` and `by_marker/` are generated views; `reviews/` indexes review papers; the original narrative `*_markers.md` files are archived in `archive/2026-09_literature_narratives/`. Moved from `reports/literature/` on 2026-09-28. |
+| [docs/](docs/README.md) | Detailed docs moved out of the README: `setup.md`, `pipeline.md`, `marker_resolution.md`, `matching_and_evaluation.md`. |
+| [docs/planning/](docs/planning/) | Planning documents: `fall_2026_sprint_backlog.md` (hand-maintained sprint breakdown of ROADMAP.md; update as items complete, not a generated report) and the Sept 21 `fall_2026_semester_plan` draft (`.md`, `.pdf`, `.html`). |
+| [archive/](archive/README.md) | Finished one-off experiments, one dated folder each with a README. Not current output; nothing regenerates it. |
+| [src/](src/README.md) `soulcap_cl_mapping/` | All Python code (module-by-stage table in `src/README.md`). `sync_sheets.py` → `soulcap-sync`; `marker_syntax.py` → `soulcap-validate` (EBNF validator); `snippet_cache.py` → `soulcap-cache`; `report_validator.py` → `soulcap-validate-report`; `cl_pro.py` → `soulcap-cl-pro` (CL→PR relationships via Ubergraph SPARQL); `cl_match.py` → `soulcap-match` (marker-axiom + lexical CL candidate scoring, single-profile or `--batch`); `oak_match.py` → `soulcap-oak-match` (OAK sqlite-backed lexical/synonym CL search — downloads/caches a local CL database on first use, ~100MB); `sssom_export.py` → `soulcap-sssom` (curated mappings → SSSOM TSV, with confidence derived from CL marker-axiom assertion status); `pro_species_support.py` (scopes CL PRO markers needing species-specificity literature support — no CLI, called as a library from the `pro-marker-species-support` skill); `europepmc_search.py` → `soulcap-europepmc` (free, keyless Europe PMC search — fallback literature source when the Asta MCP server isn't reachable); `pubmed_search.py` → `soulcap-pubmed` (NCBI E-utilities search — reads `PUBMED_API_KEY` from `.env` if set for the higher rate limit, otherwise works keyless; use when a task specifically needs NCBI's own index/query syntax rather than Europe PMC's mirror of it). |
 | `tests/` | Unit tests (mirror `src/` layout). |
-| `.claude/skills/` | Project skills — see [citation-traversal](.claude/skills/citation-traversal/SKILL.md), `ontology-term-lookup`, [pro-marker-species-support](.claude/skills/pro-marker-species-support/SKILL.md), [gap-issue-filing](.claude/skills/gap-issue-filing/SKILL.md), [roadmap-status-sync](.claude/skills/roadmap-status-sync/SKILL.md), and [mapping-audit](.claude/skills/mapping-audit/SKILL.md). |
+| `.claude/skills/` | Project skills — see [soulcap-cl-matching](.claude/skills/soulcap-cl-matching/SKILL.md), [citation-traversal](.claude/skills/citation-traversal/SKILL.md), `ontology-term-lookup`, [pro-marker-species-support](.claude/skills/pro-marker-species-support/SKILL.md), [gap-issue-filing](.claude/skills/gap-issue-filing/SKILL.md), [roadmap-status-sync](.claude/skills/roadmap-status-sync/SKILL.md), and [mapping-audit](.claude/skills/mapping-audit/SKILL.md). |
 | `.claude/hooks/` | Claude Code hooks. `validate_report_quotes.py` is a PreToolUse guard that blocks writing a citation-traversal report whose quotes aren't verbatim in the snippet cache. |
 | `data/` | Gitignored cache of the synced sheet (CSV + xlsx). |
 | `pyproject.toml` | Project metadata, deps, and the CLI entry points. |
@@ -75,8 +80,29 @@ When you create a new artifact, put it in the established location and link it
 from here and the README so locations stay consistent. Do not scatter
 documents at the repo root.
 
+### Where things go
+
+Follow these rules for every new or moved file. Update the relevant folder
+README **in the same commit** as the change.
+
+| New file is… | Put it in | Also |
+|---|---|---|
+| A current generated output (report, export, dashboard) | `reports/` | Add a row to `reports/README.md` (a test enforces this). Never hand-edit generated files. |
+| A one-off experiment, comparison run or diagnostic | `archive/<YYYY-MM>_<topic>/` | Add a README saying what ran, what it showed, how to reproduce. Keep `.md`/`.tsv` summaries; leave out large JSON/HTML. Add a row to `archive/README.md`. |
+| Literature evidence (quotes, review-paper notes) | A row in `literature/evidence.tsv`; review papers in `literature/reviews/reviews.tsv` | Verbatim quotes with PMID/DOI only. No paywalled PDFs. Then run `soulcap-evidence verify` and `views`. |
+| A mapping decision | `mappings/curated_mappings.tsv` (a row, not a new file) | Re-run `soulcap-sssom`. Never put decisions in Python or in `candidate_cl_mappings.md`. |
+| A marker token → protein change | `marker_mappings/` | Review the token's policy row in `marker_resolution.tsv` before updating its `registry_sha256`. |
+| A per-cell-type review | `cell_type_reviews/<slug>.md` | Update the index in `cell_type_reviews/README.md`. |
+| Detailed documentation | `docs/` | Link it from `docs/README.md`. Keep the top-level README short. |
+| A planning document | `docs/planning/` | |
+| Python code / tests | `src/soulcap_cl_mapping/` / `tests/` | Add the module to `src/README.md`; CLIs go in `pyproject.toml`. |
+
+Never create a new top-level folder or root-level file without updating the
+README's layout table and this table. `tests/test_doc_links.py` fails if a
+relative link in the hand-written docs breaks.
+
 The September 21 Fall 2026 planning draft for Dr. Diehl is
-`reports/fall_2026_semester_plan.md`, with matching `.pdf` and `.html` versions.
+`docs/planning/fall_2026_semester_plan.md`, with matching `.pdf` and `.html` versions.
 It summarizes recent work and proposes weekly deliverables and agent task
 instructions. It does not replace the existing sprint backlog or establish
 new scientific approvals or collaborator commitments without agreement.
@@ -93,8 +119,15 @@ new scientific approvals or collaborator commitments without agreement.
   mappings. It never merges our own candidate mappings into CL or reasons
   over them as if accepted — those stay as SSSOM (`soulcap-sssom`), a
   proposal for human review, not something this repo asserts unilaterally.
-- Use **UV** for environment and dependency management (`uv sync`,
-  `uv run ...`). Don't invoke `pip` directly.
+- Use **UV** for environment and dependency management (`uv sync --extra dev`,
+  `uv run ...`). Plain `uv sync` removes the dev tools (pytest, ruff, mypy).
+  Don't invoke `pip` directly.
+- **Never write an identifier from memory.** This covers DOIs, PMIDs, PMCIDs
+  and PRO, CL, GO, CHEBI and UniProt IDs. Look each one up (OLS4, Europe PMC,
+  the source paper or datasheet, or a file in this repo) and cite where it
+  came from. The same applies to facts about an identifier, such as a term's
+  definition, parent or components, or which chain an antibody clone binds:
+  if you can't verify it, say so rather than state it.
 - The marker expression language is precisely defined in
   [MARKER_SYNTAX.md](MARKER_SYNTAX.md) — any parser/validator must conform to
   its EBNF (including the hyphen-disambiguation lexer rule).
@@ -137,7 +170,9 @@ exact ontology labels via OLS4 — prefer it for term resolution.
 - **`soulcap-cl-matching`** — propose a CL match for a SOULCAP cell type using
   both marker-axiom scoring (`soulcap-match`) and lexical search, cross-checked
   against each other and verified via direct OLS4 lookup when uncertain, then
-  written into `reports/candidate_cl_mappings.md` with rationale and evidence.
+  recorded as a row in `mappings/curated_mappings.tsv` with rationale and
+  evidence, followed by `uv run soulcap-sssom` to regenerate the reports. It
+  never edits the generated `reports/candidate_cl_mappings.md` directly.
   The Milestone 4 workflow. See
   [SKILL.md](.claude/skills/soulcap-cl-matching/SKILL.md).
 - **`pro-marker-species-support`** — check whether a CL PRO marker asserted on
diff --git a/MARKER_SYNTAX.md b/MARKER_SYNTAX.md
index 8eb0c00..7a66cd3 100644
--- a/MARKER_SYNTAX.md
+++ b/MARKER_SYNTAX.md
@@ -12,6 +12,18 @@ marker columns of the **`Marker Combinations`** sheet:
 It has two parts: a [human-readable guide](#1-human-readable-guide) and a
 [formal grammar](#2-formal-grammar-ebnf). They describe the same language.
 
+## Quick reference
+
+```
+live/        selection for live cells, not a marker
+(x|y)        x OR y
+space        AND
+[ ] and ( )  grouping (contents AND- or OR-joined); a postfix after a closing
+             bracket applies to the whole group, e.g. [A B]- = NOT(A AND B)
+postfixes    -, +, lo, hi, int, +/- (= low to undetectable)
+/            OR delimiter on a postfix, e.g. -/lo
+```
+
 ---
 
 ## 1. Human-readable guide
@@ -196,6 +208,15 @@ sheet contains entries that violate it and should be corrected at source (the
   same marker, sometimes within one expression. Pick one canonical spelling.
 - **Inconsistent group negation** — `[CD15hi|CD66b+]` appears both with and
   without a trailing `-`; confirm which cell types intend the negation.
+- **Marker names must not contain spaces.** A space always means AND, so a
+  name with spaces is read as several separate markers. `TCR V delta1-`
+  becomes `TCR`, `V` and `delta1-`, and `MR1 Tetramer+` becomes `MR1` and
+  `Tetramer+`. Some of these strings (e.g. `TCR V delta1-`) even pass the
+  grammar, so the validator cannot catch them; they surface only as nonsense
+  tokens. Write each marker as a single token: `TCRVd1-`, `TCRVd2+`,
+  `TCRVg9+`, `TCRVb11+`, `MR1Tetramer+`, `CD1d-a-GalCer-Tetramer+` (the
+  spellings used in `reports/proposed_marker_fixes.xlsx`). Affected rows are
+  listed in [reports/soulcap_feedback.tsv](reports/soulcap_feedback.tsv).
 
 A parser built from §2 can be used to lint the sheet for these.
 
diff --git a/Notes.md b/Notes.md
deleted file mode 100644
index 39ef7d1..0000000
--- a/Notes.md
+++ /dev/null
@@ -1,23 +0,0 @@
-Input data sources:
-
-https://docs.google.com/spreadsheets/d/1uWwczLxgbpWMmXycL8Thq5NVExzlib4A/edit?pli=1&gid=1187300939#gid=1187300939
-
-Sheets:
-
-`Marker Combinations` is our master for SOULCAP cell type definition by negative positive cell flow cytometry markers
-
-`Citation Mgr` contains reference papers by major cell type.
-
-
-Marker syntax (for the `Marker Combinations` sheet) is now specified in full in
-MARKER_SYNTAX.md — both a human-readable guide and a formal EBNF grammar.
-
-Quick reference:
-
-`live/` - selection for live cell, not a marker
-(x|y) = x OR y
-space = AND
-[ ] and ( ) = grouping (contents AND- or OR-joined); a postfix after a closing
-              bracket applies to the whole group, e.g. [A B]- = NOT(A AND B)
-postfixes: -, + , lo, hi, int, `+/-` (=low to undetectable)
-`/` = OR delimiter on postfix e.g. -/lo
\ No newline at end of file
diff --git a/README.md b/README.md
index a41d79a..7137483 100644
--- a/README.md
+++ b/README.md
@@ -1,473 +1,174 @@
 # SOULCAP ↔ Cell Ontology Mapping
 
-Warning - any mappings found on this repo or linked to from it are a work in progress. They are NOT official products of SOULCAP or the Cell Ontology
+> **Warning:** any mappings found in this repo or linked from it are a work in
+> progress. They are NOT official products of SOULCAP or the Cell Ontology.
 
 ## Aims
 
 Build mappings between [SOULCAP](https://soulcap.org/) and the
-[Cell Ontology](https://github.com/obophenotype/cell-ontology), improving both
-resources in the process.
-
-By aligning SOULCAP cell type definitions with Cell Ontology classes, this work
-aims to:
+[Cell Ontology](https://github.com/obophenotype/cell-ontology) (CL), improving
+both resources in the process:
 
 - Give SOULCAP cell types stable, interoperable ontology identifiers.
 - Surface gaps and inconsistencies in both resources (missing cell types,
   ambiguous definitions, conflicting marker assertions) so they can be fixed
   upstream.
 
-## Background
-
-**SOULCAP** ([soulcap.org](https://soulcap.org/)) is a resource that defines
-cell types — including by their positive and negative cell-surface marker
-combinations as measured by flow cytometry. Each cell type is backed by
-reference literature.
-
-**Cell Ontology (CL)**
-([github.com/obophenotype/cell-ontology](https://github.com/obophenotype/cell-ontology))
-is a community-developed OBO ontology providing a structured, cross-species
-controlled vocabulary of cell types. It is widely used for annotating
-single-cell datasets and is a standard reference for cell type identity across
-the life sciences.
+**SOULCAP** defines immune cell types by positive/negative cell-surface marker
+combinations measured by flow cytometry, each backed by reference literature.
+**CL** is the community OBO ontology of cell types; many CL terms carry logical
+axioms linking them to Protein Ontology (PRO) marker proteins.
+
+**Status (2026-09-28):** 127 SOULCAP cell types have local IDs; 80 have a
+proposed CL mapping (50 Exact, 30 Broad). All 80 are `needs_review`. See
+[ROADMAP.md](ROADMAP.md) for milestones.
+
+## Pipeline
+
+```mermaid
+flowchart TD
+    sheet[("Google Sheet<br/>Marker Combinations")] -->|soulcap-sync| data["data/*.csv<br/>(gitignored cache)"]
+    data -->|soulcap-validate| val["reports/marker_validation.md<br/>syntax errors for SOULCAP"]
+    data -->|soulcap-tokens| tokens["marker_mappings/marker_tokens.csv"]
+    tokens -->|soulcap-map| registry["marker_mappings/marker_protein_gene.csv<br/>token → PRO / UniProt / gene"]
+    registry --- policy["marker_mappings/marker_resolution.tsv<br/>allow / withhold per token"]
+    ubergraph[("Ubergraph<br/>CL + PRO")] -->|soulcap-cl-pro| clpro["reports/cl_pro_relationships.tsv<br/>CL marker axioms"]
+    data --> match
+    clpro --> match
+    policy -.->|"--marker-map (opt-in)"| match
+    match["soulcap-match<br/>marker-axiom + lexical scoring"] --> batch["reports/candidate_cl_mappings_batch.tsv<br/>unreviewed shortlist"]
+    batch -->|"agent skill + curator review"| curated["mappings/curated_mappings.tsv<br/>proposed decisions"]
+    curated -->|soulcap-sssom| sssom["reports/candidate_cl_mappings.sssom.tsv<br/>+ .md review + provenance hashes"]
+    curated -->|soulcap-audit| audit["reports/audit_dashboard.html"]
+    curated -->|soulcap-evaluate| evalr["reports/matcher_evaluation.md"]
+```
+
+Stage-by-stage commands and options: [docs/pipeline.md](docs/pipeline.md).
+
+## Key files
+
+| What | Where |
+|---|---|
+| Source definitions | The [Google Sheet](https://docs.google.com/spreadsheets/d/1uWwczLxgbpWMmXycL8Thq5NVExzlib4A/edit), synced into `data/`. Never edit `data/`; fix the Sheet. |
+| Marker expression grammar | [MARKER_SYNTAX.md](MARKER_SYNTAX.md) |
+| **Token → PRO mapping** | [marker_mappings/marker_protein_gene.csv](marker_mappings/marker_protein_gene.csv): each marker token with its PRO ID, UniProt ID and gene |
+| **Which tokens are withheld, and why** | [marker_mappings/marker_resolution.tsv](marker_mappings/marker_resolution.tsv) (policy per token) and [reports/marker_resolution_audit.md](reports/marker_resolution_audit.md) (effect on matching). How the three relate, and what the SHA-256 column is: [marker_mappings/README.md](marker_mappings/README.md) |
+| **Proposed CL mappings (decisions)** | [mappings/curated_mappings.tsv](mappings/curated_mappings.tsv), with local IDs in [mappings/soulcap_entities.tsv](mappings/soulcap_entities.tsv) |
+| Proposed CL mappings (to read) | [reports/candidate_cl_mappings.md](reports/candidate_cl_mappings.md) and the SSSOM export [reports/candidate_cl_mappings.sssom.tsv](reports/candidate_cl_mappings.sssom.tsv) |
+| CL's own marker axioms | [reports/cl_pro_relationships.md](reports/cl_pro_relationships.md) |
+| Gaps in CL or SOULCAP | [reports/gaps.tsv](reports/gaps.tsv), [reports/cl_term_issues.md](reports/cl_term_issues.md) |
+| Literature evidence | [literature/evidence.tsv](literature/evidence.tsv), one row per cell type, marker and quote, with views in [literature/](literature/README.md) |
+| Audit dashboard | [reports/audit_dashboard.html](reports/audit_dashboard.html) (download and open in a browser) |
+
+## Mapping machinery
+
+The mapping work mixes deterministic code, LLM agent skills and human review.
+Each has a clear boundary.
+
+**Deterministic Python** (`src/soulcap_cl_mapping/`, run with `uv run <command>`).
+Same inputs, same outputs; covered by unit tests at ≥80%.
+
+| Command | Does |
+|---|---|
+| `soulcap-sync` | Download the Sheet into `data/` and validate marker strings |
+| `soulcap-validate`, `soulcap-tokens` | Check marker strings against the grammar; extract distinct tokens |
+| `soulcap-map`, `soulcap-hgnc` | Build the token → PRO / UniProt / gene registry; add HGNC symbols to CL axioms |
+| `soulcap-cl-pro` | Pull CL→PRO marker axioms from Ubergraph |
+| `soulcap-match` | Rank CL terms against a SOULCAP marker profile (marker axioms, plus lexical with `--lexical`) |
+| `soulcap-oak-match`, `soulcap-lookup`, `soulcap-cache-terms` | Name/synonym search in CL (local OAK database, OLS4, or cached labels) |
+| `soulcap-sssom` | Turn `curated_mappings.tsv` into SSSOM + a readable review, with per-mapping marker evidence |
+| `soulcap-audit`, `soulcap-evaluate`, `soulcap-resolution-audit` | Dashboard, matcher retrieval metrics, effect of marker policies |
+| `soulcap-resolved` | List cell types whose markers all resolve to single PRO terms, and the CL terms they reach |
+| `soulcap-europepmc`, `soulcap-pubmed`, `soulcap-cache`, `soulcap-validate-report` | Literature search and snippet caching; quote verification |
+| `soulcap-evidence` | Literature evidence table: migrate narratives, verify quotes against Europe PMC full text, build views |
+
+**Agent skills** (`.claude/skills/`, run by Claude Code). These do judgement
+work: choosing between candidates, reading papers, writing rationale. They call
+the commands above for anything that can be computed.
+
+| Skill | Purpose | Inputs → outputs | Runs |
+|---|---|---|---|
+| [soulcap-cl-matching](.claude/skills/soulcap-cl-matching/SKILL.md) | Propose a CL term for a SOULCAP cell type, cross-checking marker and lexical matching, verifying via OLS4 | Sheet rows, CL axioms → proposed mapping with rationale | Agent + `soulcap-match`, `soulcap-lookup` |
+| [citation-traversal](.claude/skills/citation-traversal/SKILL.md) | Answer a question from seed papers by following their citations two levels deep | Question + seed DOIs/PMIDs → quoted summary in `reports/citation_traversal/` (gitignored) | Agent + Asta; a hook blocks any quote not verbatim in the cache |
+| [pro-marker-species-support](.claude/skills/pro-marker-species-support/SKILL.md) | Check whether a CL PRO marker is supported in human, mouse or both | CL axioms, `literature/` → [reports/pro_marker_species_support.tsv](reports/pro_marker_species_support.tsv) | Agent + `pro_species_support.py`, `soulcap-europepmc` |
+| [mapping-audit](.claude/skills/mapping-audit/SKILL.md) | Re-check proposed mappings against current CL axioms and literature; catch drift | SSSOM, CL axioms, `literature/` → `reports/mapping_audit.md` (not yet run) | Agent + `soulcap-match`, `soulcap-lookup` |
+| [ontology-term-lookup](.claude/skills/ontology-term-lookup/SKILL.md) | Resolve a biological term to an exact ontology label | Term + ontology → matched ID and label | Agent + OLS4 MCP |
+| [gap-issue-filing](.claude/skills/gap-issue-filing/SKILL.md) | File unfiled `gaps.tsv` rows as GitHub issues, avoiding duplicates | `reports/gaps.tsv` → GitHub issues, row updated | Agent + `gh` |
+| [roadmap-status-sync](.claude/skills/roadmap-status-sync/SKILL.md) | Correct stale milestone markers in ROADMAP.md from what is on disk | Repo files, issues → ROADMAP.md | Agent |
+
+**Human review.** Every proposal starts as `review_status = needs_review` in
+`curated_mappings.tsv`. Per-cell-type evidence and verdicts are written in
+[cell_type_reviews/](cell_type_reviews/README.md); only reviews that hit an
+uncertainty trigger go to Dr. Diehl. A verdict takes effect only once it is
+entered in the Sheet. Gap issues and CL change requests are filed only after
+review. (The review folder was scaffolded 2026-09-23 with no reviews yet; how
+it relates to [literature/](literature/README.md) is still being confirmed with
+Dr. Diehl.)
+
+**Reproducibility.**
+- Generated outputs carry SHA-256 hashes of their inputs: the SSSOM export has
+  a `.provenance.json` sidecar, and the evaluation JSON records input and
+  matcher-source hashes.
+- Each marker policy stores a fingerprint of its registry rows, so it fails
+  loudly if the registry changes.
+- Literature quotes must be verbatim and cited; the citation-traversal hook
+  enforces this.
+- No numeric confidence is assigned yet, pending calibration against reviewed
+  examples.
+
+## Outputs
+
+Every file in [reports/](reports/README.md) is listed in its README with the
+command that produces it and whether it is curated or generated. The ones most
+people want:
+
+| Output | Producer | Regenerable | For |
+|---|---|---|---|
+| [candidate_cl_mappings.md](reports/candidate_cl_mappings.md) / [.sssom.tsv](reports/candidate_cl_mappings.sssom.tsv) | `soulcap-sssom` | Yes | Reviewers; CL editors |
+| [audit_dashboard.html](reports/audit_dashboard.html) | `soulcap-audit` | Yes (needs `data/`) | Reviewers |
+| [gaps.tsv](reports/gaps.tsv), [cl_term_issues.md](reports/cl_term_issues.md) | Hand-curated | No | CL and SOULCAP maintainers |
+| [marker_validation.md](reports/marker_validation.md), [marker_string_issues.md](reports/marker_string_issues.md) | `soulcap-sync` / hand-curated | Partly | SOULCAP curators |
+| [pro_marker_species_support.tsv](reports/pro_marker_species_support.tsv) | `pro-marker-species-support` skill | No | CL editors |
+| [matcher_evaluation.md](reports/matcher_evaluation.md) | `soulcap-evaluate` | Yes | Developers |
+
+## Quick start
+
+Install [UV](https://docs.astral.sh/uv/), then:
+
+```bash
+uv sync                  # create the environment
+uv run soulcap-sync      # pull the Sheet into data/ (sheet must be link-viewable)
+uv run soulcap-match --batch     # candidate shortlist for every cell type
+uv run soulcap-sssom     # regenerate the mapping review + SSSOM from curated_mappings.tsv
+uv run soulcap-audit     # regenerate the dashboard
+uv run pytest            # tests (≥80% coverage enforced)
+```
+
+To change a mapping decision, edit
+[mappings/curated_mappings.tsv](mappings/curated_mappings.tsv) and re-run
+`soulcap-sssom`. MCP servers and API keys (Asta, optional PubMed):
+[docs/setup.md](docs/setup.md).
+
+## Repository layout
+
+| Folder | Contents |
+|---|---|
+| [mappings/](mappings/README.md) | Curated mapping decisions and permanent local entity IDs |
+| [marker_mappings/](marker_mappings/README.md) | Token → PRO registry and per-token resolution policy |
+| [literature/](literature/README.md) | Literature evidence (verbatim quotes with citations) |
+| [cell_type_reviews/](cell_type_reviews/README.md) | One evidence-and-verdict file per SOULCAP cell type |
+| [reports/](reports/README.md) | Current outputs, each listed with its producer |
+| [docs/](docs/README.md) | Detailed documentation and planning documents |
+| [archive/](archive/README.md) | Finished experiments, kept for the record |
+| [src/](src/README.md), `tests/` | Python package and its unit tests |
+
+Agent guidance, including where new files go, is in [CLAUDE.md](CLAUDE.md).
 
 ## Planning
 
-Milestones and their status live in [ROADMAP.md](ROADMAP.md). The current
-semester's sprint-level breakdown (sub-tasks, acceptance criteria, and what's
-blocked on someone outside the repo) is
-[reports/fall_2026_sprint_backlog.md](reports/fall_2026_sprint_backlog.md).
-
-The September 21 discussion draft for Dr. Diehl expands this into a
-plain-language October–December plan, recent-work summary, weekly schedule,
-and agent task instructions: [PDF](reports/fall_2026_semester_plan.pdf),
-[editable Markdown](reports/fall_2026_semester_plan.md), or
-[browser version](reports/fall_2026_semester_plan.html).
-Its workload and review targets are proposed for approval, not confirmed commitments.
-
-## Setup
-
-### 1. Clone this repo
-
-### 2. Install UV and create the environment
-
-Install [UV](https://docs.astral.sh/uv/), then use it to create a virtual
-environment with the project dependencies:
-
-```bash
-# Install UV (macOS / Linux)
-curl -LsSf https://astral.sh/uv/install.sh | sh
-
-# Create the virtual environment and install dependencies
-uv sync
-```
-
-### 2. MCP servers (Claude Code)
-
-The MCP servers used by this project — `Asta_semanticscholar` (literature
-search), `artl-mcp`, and `ols4` — are defined in the committed
-[.mcp.json](.mcp.json) and enabled for the project in the committed
-`.claude/settings.json`. No per-developer action is needed to enable them.
-
-### 3. Configure the Asta API token
-
-The [Asta](https://allenai.org/asta/resources/mcp) tools require a personal API
-key. Request one from <https://allenai.org/asta/resources/mcp>, then add it to
-your **local, gitignored** Claude Code settings at
-`.claude/settings.local.json`:
-
-```json
-{
-  "env": {
-    "ASTA_API_KEY": "{token}"
-  }
-}
-```
-
-Replace `{token}` with your actual key. Claude Code reads this `env` block at
-startup and expands `${ASTA_API_KEY}` into the `x-api-key` header in
-[.mcp.json](.mcp.json).
-
-`.claude/settings.local.json` is gitignored and must **never** be committed —
-it is the only place the secret lives. Restart Claude Code after editing it so
-the key is picked up.
-
-### Optional: PubMed (NCBI E-utilities)
-
-`soulcap-pubmed` (`src/soulcap_cl_mapping/pubmed_search.py`) works keyless,
-same as `soulcap-europepmc`. An NCBI API key just raises the rate limit from
-3 to 10 requests/second. If you want one, generate it from your
-[NCBI account settings](https://www.ncbi.nlm.nih.gov/account/settings/) under
-**API Key Management**, then add it to the **local, gitignored** `.env`:
-
-```
-PUBMED_API_KEY={token}
-```
-
-Unlike `ASTA_API_KEY`, this is read directly by Python (via `python-dotenv`),
-not through Claude Code's MCP `env` substitution — it isn't an MCP server key.
-
-## Unified audit dashboard
-
-Generate an offline dashboard from the local data and mapping registries:
-
-```bash
-uv run soulcap-audit
-```
-
-Open [reports/audit_dashboard.html](reports/audit_dashboard.html) in a browser.
-It includes searchable, filterable review tables for SOULCAP entities, proposed
-CL targets, prioritized findings, marker coverage, gaps, species evidence, and
-input provenance. Expand a row to inspect its evidence and source references.
-No server, network calls, or additional dashboard dependencies are required.
-
-The command also writes [audit_summary.md](reports/audit_summary.md) and
-[audit_data.json](reports/audit_data.json). Use `--root PATH` for another repository
-snapshot, `--out-dir PATH` for another output directory, or `--strict` to return
-exit code 1 when error findings exist (reports are still generated).
-
-The audit recomputes marker evidence without changing source data or mappings.
-Missing inputs are reported as unavailable, not zero. Local hashes and export
-evidence are checked for drift; upstream freshness is not checked. Historical
-agreement reports and family-level gaps are not silently joined to entity IDs.
-Mapping proposals and marker compatibility do **not** establish equivalence.
-
-## Matcher evaluation
-
-```bash
-uv run soulcap-evaluate
-uv run soulcap-audit
-```
-
-The first command writes `reports/matcher_evaluation.md`, `.json`, and `.tsv`;
-the second refreshes the dashboard's evaluation view. Evaluation is offline and
-uses the production matcher unchanged, including its name hints and tie order.
-It measures CL target retrieval, not the correctness of an equivalence relation.
-
-Existing mapping proposals automatically form a **provisional agreement** cohort.
-The separate [benchmark TSV](mappings/matcher_benchmark.tsv) starts empty: no
-proposal is automatically certified as ground truth. Add manually reviewed cases
-with columns `subject_id`, `acceptable_cl_ids` (`|`-separated alternatives),
-`match_type` (`Exact`, `Broad`, `Narrow`, `Related`), `review_status` (`reviewed`
-or `provisional`), and `evidence_reference` (required for reviewed cases).
-One case represents a subject/relation within a cohort. An explicit provisional
-case overrides that subject/relation's proposal-derived targets. Review statuses
-in the proposal registry never automatically promote cases to the reviewed cohort.
-
-Top-1/3/5 hit rates and mean reciprocal rank include every cohort case in their
-denominators, with zero credit for unscorable profiles and absent targets. Empty
-cohorts report unavailable metrics. Best/worst tie bounds expose ordering
-sensitivity; disqualified candidates are retained and flagged, not endorsed.
-Exact/Broad/Narrow/Related results are reported separately. Profile drift requires
-review before scoring; benchmark targets must be re-reviewed if definitions change.
-
-To compare against a saved JSON baseline without overwriting it:
-
-```bash
-uv run soulcap-evaluate --baseline reports/matcher_evaluation.json --out-dir reports/evaluation-next
-```
-
-Use `--root PATH` or `--benchmark PATH` for other snapshots/case files. The JSON
-records input and matcher-source hashes. Input/configuration drift marks baseline
-comparisons non-equivalent; rank changes are descriptive, not significance tests.
-The dashboard reads the default report location and checks local hashes; a custom
-benchmark is unverified unless its contents match the default benchmark.
-Missing or malformed required inputs fail before reports are written.
-
-## Alias/protein-aware matching and local candidate coverage
-
-The enhanced modes are explicit opt-ins; omitting the flags preserves the legacy
-marker scorer. They do not change curated mapping decisions. Candidate scoring,
-mapping evidence, SSSOM export, and the audit now share the same resolver when
-`--marker-map` is explicitly enabled for each command; defaults remain legacy.
-
-```bash
-uv run soulcap-match --batch --marker-map marker_mappings/marker_protein_gene.csv --term-cache reports/cl_lexical_cache.json --batch-out reports/candidate_cl_mappings_enhanced.tsv
-uv run soulcap-evaluate --marker-map marker_mappings/marker_protein_gene.csv --term-cache reports/cl_lexical_cache.json --baseline reports/matcher_evaluation_baseline.json
-uv run soulcap-audit
-```
-
-Marker resolution uses explicit registry aliases and exact PRO identity, preserving
-positive/negative and expression-level distinctions. Its sibling policy file,
-[marker_resolution.tsv](marker_mappings/marker_resolution.tsv), must classify
-every normalized registry marker as `single_protein`, `protein_family`, `complex`,
-`reagent_gate`, or `unresolved`, with an explicit `allow`/`withhold` protein policy,
-rationale, source reference, and SHA-256 of the original registry rows. Runtime
-resolution does not interpret free-text notes to decide protein identity. Only
-single-protein policies with exactly one PRO ID can allow protein expansion.
-Missing, conflicting, or stale policies fail rather than silently guessing.
-
-Initial policies preserve existing single-PRO representations as computational
-assumptions, not biological sign-offs. CD3, CD8, CD15, CD16, and MR1 have conservative
-holds because the registry's component/family/reagent representation needs review;
-no source identifiers have been changed. Complex, family, and reagent policies
-cannot inherit a component-protein assertion through an alias. An explicit
-same-marker assertion without a component PRO remains distinguishable evidence.
-Related/broad ontology synonyms do not imply identity. No gene-symbol,
-cross-species, or protein-hierarchy equivalence is inferred.
-
-Compatible duplicate aliases with the same allowed PRO identity are merged;
-conflicting owners remain unresolved. Identical semantic clauses count once across
-required/ideal columns (required takes precedence), while contradictory signs,
-different levels, and distinct OR constraints remain separate. Original source
-spelling is retained for evidence display. After a registry edit, review and update
-the affected policy and its fingerprint; do not simply refresh hashes to bypass review.
-Resolution paths are recorded in candidate evidence; withheld cases are listed in
-evaluation JSON under `marker_resolution_issues`.
-
-Isolate resolver changes from lexical coverage and inspect detailed differences:
-
-```bash
-uv run soulcap-resolution-audit
-uv run soulcap-evaluate --out-dir reports/resolver-refinement/legacy
-uv run soulcap-evaluate --marker-map marker_mappings/marker_protein_gene.csv --out-dir reports/resolver-refinement/enhanced --baseline reports/resolver-refinement/legacy/matcher_evaluation.json
-uv run soulcap-sssom --marker-map marker_mappings/marker_protein_gene.csv --out reports/resolver-refinement/enhanced.sssom.tsv
-uv run soulcap-audit --marker-map marker_mappings/marker_protein_gene.csv --out-dir reports/resolver-refinement/audit
-```
-
-The [resolution audit](reports/marker_resolution_audit.md) includes per-marker
-gains/losses and JSON with per-mapping before/after evidence. Case-normalized
-resolution covers 73 marker groups from 75 registry rows. Comparison runs use
-identical source/axiom snapshots and no lexical expansion; modes intentionally
-differ, so the general evaluation comparison flags them as non-equivalent runs.
-Enhanced SSSOM export requires a separate output path to protect the default export.
-The audit explicitly distinguishes export/audit mode differences from evidence drift.
-
-The local lexical cache contains active CL labels and exact synonyms from a local
-OAK SQLite snapshot, with a source-database hash. To rebuild from your own snapshot:
-
-```bash
-uv run soulcap-cache-terms --database PATH_TO_CL_DB --out reports/cl_lexical_cache.json
-```
-
-No network services are contacted. The cache extraction timestamp is not an
-ontology release date or upstream freshness check. Lexical candidates use the source
-full name (abbreviation fallback), never expected mapping targets: normalized exact
-matches first, then word overlap of at least 0.5, limited to 20 candidates per row.
-They are unioned with marker candidates and scored with the existing weights;
-missing axioms remain unknown, not supporting evidence. Invalid/no-qualified-marker
-profiles remain unscored. Single-profile CLI searches use `--subset` or `--parent`.
-
-The evaluation distinguishes targets absent from the global index from targets
-present but not retrieved for a row. Candidate-source labels, lexical evidence,
-and protein-resolution paths are exported in batch TSV and evaluation JSON.
-The original baseline is preserved in `reports/matcher_evaluation_baseline.json`;
-controlled runs are in `reports/evaluation-legacy/` and `reports/evaluation-alias/`.
-Mode/input changes make comparisons descriptive rather than equivalent-condition
-regression tests. Broader coverage alone does not establish better ranking.
-
-## Offline regression triage
-
-```bash
-uv run python -m soulcap_cl_mapping.regression_triage
-```
-
-Writes [regression_triage.md](reports/regression-triage/regression_triage.md),
-JSON evidence, and a per-case TSV under `reports/regression-triage/`. Optional
-`--root` and `--out-dir` select another snapshot or report location. This is a
-diagnostic tool, not a production matcher mode: it does not change policies,
-mapping decisions, scoring weights, or existing audit/evaluation reports.
-
-All eight combinations separate enhanced token-evidence additions, legacy
-token-evidence removals, and semantic-clause deduplication. Candidates, their order,
-source profiles, and scoring weights remain fixed; no lexical search is run.
-Both endpoints must reproduce the production matchers. The report includes ties,
-changed expected-target and competitor evidence, policy references, pairwise
-factor effects, and input/code hashes. These computational findings do not validate
-the provisional targets or establish biological correctness of a policy.
-
-## Input data
-
-The single source of truth is a
-Google Sheet (ask for access)
-
-Key tabs:
-
-- **`Marker Combinations`** — master definition of SOULCAP cell types by
-  positive/negative flow-cytometry markers. The `OLS CL identifier` and
-  `CL Mapping Notes` columns are the targets this project populates. The marker
-  expression language used in this sheet is specified in
-  [MARKER_SYNTAX.md](MARKER_SYNTAX.md).
-- **`Citation Mgr`** — reference papers per major cell type.
-
-**Do not hand-edit the local copies — edit the Google Sheet instead.** Pull the
-latest snapshot at any time with:
-
-```bash
-uv run soulcap-sync
-```
-
-This downloads the workbook to `data/soulcap_source.xlsx` and explodes each tab
-into a CSV under `data/` (e.g. `data/marker_combinations.csv`). The entire
-`data/` directory is a regenerable cache and is gitignored.
-
-Options:
-
-```bash
-uv run soulcap-sync --no-csv            # download the raw .xlsx only
-uv run soulcap-sync --sheet-id <id>     # pull a different sheet
-SOULCAP_SHEET_ID=<id> uv run soulcap-sync
-```
-
-> The sheet must be shared as *"anyone with the link can view"* for the
-> unauthenticated export to work.
-
-## CL ↔ PR (Cell Ontology → PRO) marker relationships
-
-The Cell Ontology already defines many cell types by their protein markers via
-logical axioms. To use these as a SOULCAP↔CL mapping reference, pull them from
-the [Ubergraph](https://ubergraph.apps.renci.org/sparql) SPARQL endpoint:
-
-```bash
-uv run soulcap-cl-pro
-```
-
-This regenerates two artifacts under `reports/`:
-
-- **`cl_pro_relationships.md`** — CL-centric: each cell type with its PR markers
-  grouped by sense (positive / negative / high / low), annotated with CD
-  synonyms and mouse/human UniProt IDs, flagging inferred-only edges.
-- **`cl_pro_relationships.tsv`** — one row per (cell, relation, PR) for diffing
-  across CL/PRO releases.
-
-```bash
-uv run soulcap-cl-pro --reports-dir other/   # write elsewhere
-uv run soulcap-cl-pro --endpoint <url>        # use a different SPARQL endpoint
-```
-
-## Candidate CL matching (`soulcap-match`)
-
-Validation, token extraction, and scoring share one phenotype AST. Boolean
-negation and expression levels are preserved. Malformed profiles are flagged
-without producing marker candidates; missing axioms remain unknown. Batch
-outputs include stable `subject_id` and specimen context so duplicate
-abbreviations cannot be merged accidentally. Token regeneration also refuses
-invalid source expressions. See [MARKER_SYNTAX.md](MARKER_SYNTAX.md#4-implementation-semantics).
-
-The committed agreement TSV predates this parser/identity migration. Regenerate
-it with `soulcap-match --batch --lexical` before comparing it with current
-batch results; cached old lexical results cannot safely distinguish all
-duplicated source rows.
-
-Ranks CL terms against a SOULCAP marker profile, scored from
-`cl_pro_relationships.tsv`. Single-profile mode (paste the four marker columns
-for one cell type):
-
-```bash
-uv run soulcap-match --req-excl "CD14- CD3- CD19-" --req-pheno "CD45+ CD56+/hi" --parent "NK cell"
-```
-
-Batch mode scores every row of `data/marker_combinations.csv` in one pass:
-
-```bash
-uv run soulcap-match --batch                # -> reports/candidate_cl_mappings_batch.tsv
-uv run soulcap-match --batch --lexical       # + name-based OLS4 CL search and an
-                                              #   agreement report (reports/candidate_cl_mappings_agreement.tsv)
-```
-
-Marker-axiom scoring can only rank CL terms that already have a PR axiom in
-`cl_pro_relationships.tsv` — many CL terms (including some "obvious" parent
-classes) have none and are invisible to it. `--lexical` adds an independent
-name-based candidate per row; rows where both approaches agree are a much
-stronger signal than either alone. **Treat batch output as an unreviewed draft
-shortlist** — check the `contradictions`/`marker_conflict` columns before
-trusting a rank-1 pick, since shared exclusion markers can inflate scores for
-biologically wrong candidates.
-
-## OAK lexical/synonym matching (`soulcap-oak-match`)
-
-A second, independent lexical matcher using [OAK](https://incatools.github.io/ontology-access-kit/)
-(Ontology Access Kit) instead of the OLS4 REST API:
-
-```bash
-uv run soulcap-oak-match "Natural Killer Cell"
-uv run soulcap-oak-match "NK cell" --top 5
-```
-
-Uses OAK's `sqlite:obo:cl` adapter — a search-optimised local database that
-ranks exact label/synonym matches first by construction (OLS4's free-text
-relevance ranking, by contrast, can bury an exact match behind dozens of
-more-specific subtype variants). Downloads and caches a local CL database
-(~100MB) on first use; instant afterwards.
-
-## SSSOM mapping export (`soulcap-sssom`)
-
-The decision source is [mappings/curated_mappings.tsv](mappings/curated_mappings.tsv).
-The [entity registry](mappings/soulcap_entities.tsv) supplies permanent local
-SOULCAP IDs; [registry documentation](mappings/README.md) explains identity
-resolution, migration aliases, review status, and evidence fields.
-
-```bash
-uv run soulcap-sssom
-```
-
-This generates `reports/candidate_cl_mappings.sssom.tsv`, the readable
-`reports/candidate_cl_mappings.md`, and an input-hash provenance sidecar.
-The original detailed rationale, including sheet-confirmation notes, is
-preserved in [the narrative archive](reports/candidate_cl_mappings_narrative.md).
-
-Evidence is evaluated against each source phenotype: required-marker matches,
-contradictions, unknown clauses, ideal-marker conflicts, and direct versus
-inferred support. Current sheet confirmation, lexical evidence, and literature
-evidence remain separate. Missing or malformed profiles are explicitly flagged.
-Numeric confidence is omitted pending calibration, and all mappings remain
-proposals requiring review. Marker compatibility alone does not prove that two
-cell-type definitions are equivalent.
-
-Use `--source`, `--mappings`, `--tsv`, `--out`, and `--review-out` to
-select inputs and output locations. Existing abbreviation-based subject IDs
-are retained in the registry's `legacy_subject_id` column.
-
-## Evidence-reviewed regression follow-up
-
-The [steps 3–6 follow-up](reports/regression-followup/README.md) reviews the
-three lost top-five targets, retains a narrowly scoped whole-CD8 surface
-assertion in opt-in policy mode, and records controlled before/after results.
-Top-five provisional agreement remains 16/80; this is not a validated ranking
-improvement. Two proposed mapping relations lack sufficient support.
-
-[Resolver constraint examples](mappings/marker_assertion_benchmark.json) run
-as regression tests. A [five-entity prospective reserve](mappings/benchmark_reserve.json)
-is kept separate from development proposals and identical profiles. It still
-needs independent annotation; no gold-standard mappings or held-out accuracy
-are claimed. The report explains the remaining curator decisions.
-
-## ROBOT ontology QC
-
-`.github/workflows/robot-qc.yml` runs on every PR and audits upstream CL —
-downloads CL's `cl-base.owl` (import-free release artifact) and runs
-`robot report` + `robot reason` (ELK) on it standalone, independent of
-anything in this repo. Catches pre-existing CL bugs (e.g. duplicate
-equivalence/subclass axioms) worth reporting upstream. It never touches our
-own candidate mappings — those stay as SSSOM, a proposal for human review,
-not something this repo should unilaterally convert into OWL axioms and merge
-into CL as if already accepted.
-
-## Cell-type reviews
-
-[`cell_type_reviews/`](cell_type_reviews/README.md) holds one review file per
-SOULCAP cell type. Each file gathers the marker definition, marker → protein/gene
-mappings, verbatim literature support, a comparison against Cell Ontology terms
-and their marker axioms, and a proposed CL mapping. Reviews that meet an
-uncertainty trigger (weak literature, a conflict with CL axioms, no exact CL term,
-etc.) are sent for expert review; confident mappings go straight into the Google
-Sheet. See the folder README for the workflow, statuses, and template. Scaffolded
-2026-09-23 — no reviews written yet, and how it relates to the existing
-`reports/literature/` Milestone 2 reports is still being confirmed with Dr. Diehl
-(see [ROADMAP.md](ROADMAP.md)).
-
-## Skills & literature workflows
-
-This repo ships Claude Code skills under `.claude/skills/`:
-
-- **`citation-traversal`** — answer a specific research question from a set of
-  seed papers via a two-round ASTA (Semantic Scholar) citation traversal:
-  `snippet_search` the seeds, follow the inline references that support the
-  answering sentences, `snippet_search` those cited papers, cache every snippet,
-  then synthesise a referenced summary. Every quote in the summary must be
-  verbatim from a cached snippet — a PreToolUse hook
-  (`.claude/hooks/validate_report_quotes.py`) blocks the report otherwise. Caches
-  and reports land under `reports/citation_traversal/<run_id>/` (gitignored).
-  Supporting CLIs: `soulcap-cache` (persist snippet results) and
-  `soulcap-validate-report` (manual quote check). See the
-  [skill](.claude/skills/citation-traversal/SKILL.md).
-- **`ontology-term-lookup`** — resolve biological terms to ontology labels via OLS4.
+- Milestones and status: [ROADMAP.md](ROADMAP.md)
+- Fall 2026 sprint backlog: [docs/planning/fall_2026_sprint_backlog.md](docs/planning/fall_2026_sprint_backlog.md)
+- Sept 21 semester plan draft for Dr. Diehl (proposed, not confirmed):
+  [Markdown](docs/planning/fall_2026_semester_plan.md),
+  [PDF](docs/planning/fall_2026_semester_plan.pdf),
+  [HTML](docs/planning/fall_2026_semester_plan.html)
diff --git a/ROADMAP.md b/ROADMAP.md
index bc9587f..527c11f 100644
--- a/ROADMAP.md
+++ b/ROADMAP.md
@@ -36,7 +36,7 @@ working on any task.
 
 For the Oct–Dec 2026 execution plan against these milestones — broken into
 sprint-level sub-tasks, acceptance criteria, and who each item is blocked
-on — see [reports/fall_2026_sprint_backlog.md](reports/fall_2026_sprint_backlog.md).
+on — see [docs/planning/fall_2026_sprint_backlog.md](docs/planning/fall_2026_sprint_backlog.md).
 
 Status legend: ⬜ not started · 🟡 in progress · ✅ done · ⛔ blocked.
 
@@ -128,9 +128,12 @@ type as claimed.
 - Distinguish "no supporting evidence found" from "evidence found" — never
   invent support.
 
-**Deliverable:** a set of markdown reports under `reports/literature/` (e.g. one
-per cell type or per marker), each listing markers, verified supporting quotes,
-and citations.
+**Deliverable:** originally a set of markdown reports under `reports/literature/`
+(one per cell type or per marker, each listing markers, verified supporting
+quotes and citations). Since 2026-09-28 the evidence lives in
+`literature/evidence.tsv` (one row per cell type, marker and quote, checked
+against the paper's full text), and the narrative reports are archived in
+`archive/2026-09_literature_narratives/`.
 
 **Status (2026-09-08):** 8 of the 14 cell-type categories in the `Citation
 Mgr` tab are covered — B cell, DC, ILC, iNKT, NK cell, T cell, gdT, MAIT
@@ -213,5 +216,5 @@ upstream to `obophenotype/cell-ontology`.
   before relying on automated parsing for M1/M3/M4.
 - **Folders to standardise:**
   - `marker_mappings/` — curated mapping CSVs (tracked).
-  - `reports/literature/` — M2 literature reports.
+  - `literature/` — M2 literature reports.
   - `reports/` — analysis/audit reports (M3, M4).
diff --git a/archive/2026-09_literature_narratives/README.md b/archive/2026-09_literature_narratives/README.md
new file mode 100644
index 0000000..bd5bfe7
--- /dev/null
+++ b/archive/2026-09_literature_narratives/README.md
@@ -0,0 +1,20 @@
+# Literature narratives, July–September 2026
+
+The seven Milestone 2 narrative reports, one per cell-type family, moved here
+from `literature/` on 2026-09-28. Every quote in them was migrated into
+[literature/evidence.tsv](../../literature/evidence.tsv), which is now the
+source for literature evidence. `evidence.tsv` rows point back here through
+`source_file` and `source_line`, and older rows of
+[reports/pro_marker_species_support.tsv](../../reports/pro_marker_species_support.tsv)
+cite these files in `source_ref`. Don't edit them; add new evidence to
+`evidence.tsv`.
+
+| File | Family |
+|---|---|
+| [b_cell_markers.md](b_cell_markers.md) | B cells |
+| [dc_markers.md](dc_markers.md) | Dendritic cells |
+| [gdt_mait_markers.md](gdt_mait_markers.md) | γδ T cells and MAIT cells |
+| [ilc_markers.md](ilc_markers.md) | Innate lymphoid cells (quotes extracted with WebFetch) |
+| [inkt_markers.md](inkt_markers.md) | iNKT cells |
+| [nk_cell_markers.md](nk_cell_markers.md) | NK cells |
+| [t_cell_markers.md](t_cell_markers.md) | T cells and T helper subsets (quotes extracted with WebFetch) |
diff --git a/reports/literature/b_cell_markers.md b/archive/2026-09_literature_narratives/b_cell_markers.md
similarity index 100%
rename from reports/literature/b_cell_markers.md
rename to archive/2026-09_literature_narratives/b_cell_markers.md
diff --git a/reports/literature/dc_markers.md b/archive/2026-09_literature_narratives/dc_markers.md
similarity index 100%
rename from reports/literature/dc_markers.md
rename to archive/2026-09_literature_narratives/dc_markers.md
diff --git a/reports/literature/gdt_mait_markers.md b/archive/2026-09_literature_narratives/gdt_mait_markers.md
similarity index 100%
rename from reports/literature/gdt_mait_markers.md
rename to archive/2026-09_literature_narratives/gdt_mait_markers.md
diff --git a/reports/literature/ilc_markers.md b/archive/2026-09_literature_narratives/ilc_markers.md
similarity index 100%
rename from reports/literature/ilc_markers.md
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diff --git a/reports/literature/inkt_markers.md b/archive/2026-09_literature_narratives/inkt_markers.md
similarity index 100%
rename from reports/literature/inkt_markers.md
rename to archive/2026-09_literature_narratives/inkt_markers.md
diff --git a/reports/literature/nk_cell_markers.md b/archive/2026-09_literature_narratives/nk_cell_markers.md
similarity index 100%
rename from reports/literature/nk_cell_markers.md
rename to archive/2026-09_literature_narratives/nk_cell_markers.md
diff --git a/reports/literature/t_cell_markers.md b/archive/2026-09_literature_narratives/t_cell_markers.md
similarity index 100%
rename from reports/literature/t_cell_markers.md
rename to archive/2026-09_literature_narratives/t_cell_markers.md
diff --git a/archive/2026-09_resolver_experiments/README.md b/archive/2026-09_resolver_experiments/README.md
new file mode 100644
index 0000000..fb89953
--- /dev/null
+++ b/archive/2026-09_resolver_experiments/README.md
@@ -0,0 +1,52 @@
+# Resolver experiments, September 2026
+
+Historical comparison runs from 2026-09-10 to 2026-09-18, moved here from
+`reports/` on 2026-09-28. They explain why the opt-in token-to-PRO resolver
+(`--marker-map`) is **not** the default. Nothing here is a current output, and
+nothing here is regenerated by any command. The reproduce commands inside the
+sub-READMEs show the original `reports/...` paths they were run with.
+
+## What the experiments showed
+
+1. **Stricter marker resolution lowered agreement with the provisional
+   mappings.** With the same 80 provisional cases and 826-term axiom index,
+   top-5 agreement fell from 19/80 (legacy) to 16/80 (explicit-policy
+   resolver), and mean reciprocal rank fell from 0.152 to 0.108.
+   See [resolver-refinement/](resolver-refinement/README.md).
+2. **The drop came from evidence the stricter rules removed**, not from the
+   alias additions or duplicate-clause fixes. Withholding generic CD3/CD8
+   component assertions lost support for the expected targets and removed
+   contradictions that had been keeping implausible competitors (e.g.
+   CL:0002000) out of the top ranks. See [regression-triage/](regression-triage/README.md).
+3. **One narrow correction was kept.** CL asserts the *whole* CD8 coreceptor
+   (PR:000025402) on CL:0000625, which is a different case from inferring a
+   complex from its alpha chain. The rule `whole_cd8_surface_positive_v1` in
+   `src/soulcap_cl_mapping/marker_resolution.py` restores it in opt-in mode
+   only. Top-5 agreement stayed at 16/80, so this is not a validated ranking
+   improvement. See [regression-followup/](regression-followup/README.md).
+
+All of these metrics measure agreement with **provisional** (unreviewed)
+mappings. None of them measures biological accuracy.
+
+## Contents
+
+| Folder / file | What it is |
+|---|---|
+| [evaluation-legacy/](evaluation-legacy/matcher_evaluation.md) | Controlled legacy-mode evaluation (2026-09-10). Canonical copy of the legacy `.md`/`.tsv`. |
+| [evaluation-alias/](evaluation-alias/matcher_evaluation.md) | Alias/protein-aware evaluation (marker resolution on, no lexical expansion, 2026-09-10). Its `.md` is byte-identical to the legacy one because the headline metrics did not change; the per-case `.tsv` differs. |
+| [resolver-refinement/](resolver-refinement/README.md) | Legacy vs explicit-policy resolver comparison (2026-09-11), plus the enhanced SSSOM export and audit summary. |
+| [regression-triage/](regression-triage/README.md) | Eight-way offline diagnostic isolating which resolver change caused the ranking regression (2026-09-18). |
+| [regression-followup/](regression-followup/README.md) | Evidence review of the three lost top-5 targets and the scoped CD8 correction (2026-09-18). |
+| [candidate_cl_mappings_enhanced.tsv](candidate_cl_mappings_enhanced.tsv) | Batch candidate list from `soulcap-match --batch --marker-map` (opt-in mode). |
+
+## What was removed on 2026-09-28
+
+To keep the repository small, only the human-readable summaries (`.md`, `.tsv`,
+READMEs) were kept. These were removed from the tree and can be recovered from
+git history:
+
+| Removed | Recover with |
+|---|---|
+| All `matcher_evaluation.json` files, `regression_triage.json`, the resolver-refinement audit dashboard/JSON, `pre_refinement_evaluation.json` | `git show 4dfc726:reports/<old path>` |
+| `matcher_evaluation_baseline.json` (the original pre-resolver baseline) | `git show f1e0772:reports/matcher_evaluation_baseline.json` |
+| `regression-followup/legacy/` and `resolver-refinement/legacy/` `.md`/`.tsv` | Byte-identical to `evaluation-legacy/` (SHA-256 checked) |
diff --git a/reports/candidate_cl_mappings_enhanced.tsv b/archive/2026-09_resolver_experiments/candidate_cl_mappings_enhanced.tsv
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diff --git a/reports/evaluation-alias/matcher_evaluation.md b/archive/2026-09_resolver_experiments/evaluation-alias/matcher_evaluation.md
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diff --git a/reports/evaluation-legacy/matcher_evaluation.md b/archive/2026-09_resolver_experiments/evaluation-legacy/matcher_evaluation.md
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similarity index 98%
rename from reports/regression-followup/README.md
rename to archive/2026-09_resolver_experiments/regression-followup/README.md
index 0e94396..944e5cd 100644
--- a/reports/regression-followup/README.md
+++ b/archive/2026-09_resolver_experiments/regression-followup/README.md
@@ -96,7 +96,7 @@ tie bounds are 59–139 for the first two and 114–120 for the third. These are
 change is not evidence of general improvement. Legacy mode remains the default.
 
 - [Corrected evaluation](corrected/matcher_evaluation.md)
-- [Fresh legacy control](legacy/matcher_evaluation.md)
+- [Fresh legacy control](../evaluation-legacy/matcher_evaluation.md) (this run's `.md`/`.tsv` were byte-identical to `evaluation-legacy/` and were deduplicated on 2026-09-28)
 - [Archived strict-before evaluation](../resolver-refinement/enhanced/matcher_evaluation.md)
 - [Earlier eight-way regression triage](../regression-triage/README.md)
 
diff --git a/reports/regression-followup/corrected/matcher_evaluation.md b/archive/2026-09_resolver_experiments/regression-followup/corrected/matcher_evaluation.md
similarity index 100%
rename from reports/regression-followup/corrected/matcher_evaluation.md
rename to archive/2026-09_resolver_experiments/regression-followup/corrected/matcher_evaluation.md
diff --git a/reports/regression-followup/corrected/matcher_evaluation.tsv b/archive/2026-09_resolver_experiments/regression-followup/corrected/matcher_evaluation.tsv
similarity index 100%
rename from reports/regression-followup/corrected/matcher_evaluation.tsv
rename to archive/2026-09_resolver_experiments/regression-followup/corrected/matcher_evaluation.tsv
diff --git a/reports/regression-followup/mapping_review.tsv b/archive/2026-09_resolver_experiments/regression-followup/mapping_review.tsv
similarity index 100%
rename from reports/regression-followup/mapping_review.tsv
rename to archive/2026-09_resolver_experiments/regression-followup/mapping_review.tsv
diff --git a/reports/regression-triage/README.md b/archive/2026-09_resolver_experiments/regression-triage/README.md
similarity index 92%
rename from reports/regression-triage/README.md
rename to archive/2026-09_resolver_experiments/regression-triage/README.md
index 190d9da..0079563 100644
--- a/reports/regression-triage/README.md
+++ b/archive/2026-09_resolver_experiments/regression-triage/README.md
@@ -44,7 +44,7 @@ Production scoring, biological policies, mappings, and existing exports were
 not changed by this investigation.
 
 - [Full report: eight runs, boundary cases, and all rank changes](regression_triage.md)
-- [JSON: profiles, targets, competitor scores, axiom and policy evidence, paired factor effects, hashes](regression_triage.json)
+- JSON: profiles, targets, competitor scores, axiom and policy evidence, paired factor effects, hashes. Removed from the tree on 2026-09-28 to save space; recover with `git show 4dfc726:reports/regression-triage/regression_triage.json`
 - [TSV: every case's rank in every run](regression_triage.tsv)
 
 Reproduce with `uv run python -m soulcap_cl_mapping.regression_triage`.
diff --git a/reports/regression-triage/regression_triage.md b/archive/2026-09_resolver_experiments/regression-triage/regression_triage.md
similarity index 100%
rename from reports/regression-triage/regression_triage.md
rename to archive/2026-09_resolver_experiments/regression-triage/regression_triage.md
diff --git a/reports/regression-triage/regression_triage.tsv b/archive/2026-09_resolver_experiments/regression-triage/regression_triage.tsv
similarity index 100%
rename from reports/regression-triage/regression_triage.tsv
rename to archive/2026-09_resolver_experiments/regression-triage/regression_triage.tsv
diff --git a/reports/resolver-refinement/README.md b/archive/2026-09_resolver_experiments/resolver-refinement/README.md
similarity index 70%
rename from reports/resolver-refinement/README.md
rename to archive/2026-09_resolver_experiments/resolver-refinement/README.md
index 73eba39..ec8b8b1 100644
--- a/reports/resolver-refinement/README.md
+++ b/archive/2026-09_resolver_experiments/resolver-refinement/README.md
@@ -17,18 +17,19 @@ withholds component/family/reagent assertions and incompatible protein identitie
 it also fixes compatible duplicate alias ownership and double-counted clauses.
 The generic comparison marks mode/input differences as non-equivalent by design.
 
-The [per-marker audit](../marker_resolution_audit.md) reports six normalized
+The [per-marker audit](../../../reports/marker_resolution_audit.md) reports six normalized
 marker groups gaining axiom links and eleven losing links. None of the 80
 mapping-level support status categories changed, although their detailed evidence
 and candidate rankings can differ. Inspect the JSON evidence before accepting
 any representation or ranking change.
 
-- [Legacy evaluation](legacy/matcher_evaluation.md)
+- [Legacy evaluation](../evaluation-legacy/matcher_evaluation.md) (byte-identical copy; deduplicated 2026-09-28)
 - [Enhanced evaluation](enhanced/matcher_evaluation.md)
 - [Enhanced mapping review](enhanced.sssom.md)
-- [Enhanced audit dashboard](audit/audit_dashboard.html)
-- `pre_refinement_evaluation.json` preserves the prior combined lexical/alias run;
-  it is not the controlled legacy comparator used above.
+- [Enhanced audit summary](audit/audit_summary.md) (dashboard HTML/JSON removed 2026-09-28; recover with `git show 4dfc726:reports/resolver-refinement/audit/audit_dashboard.html`)
+- `pre_refinement_evaluation.json` preserved the prior combined lexical/alias run;
+  it is not the controlled legacy comparator used above. Removed 2026-09-28; recover with
+  `git show 4dfc726:reports/resolver-refinement/pre_refinement_evaluation.json`.
 
 Source data, existing marker identifiers, mapping decisions, and the default
 SSSOM export were not changed. Enhanced SSSOM and its input-hash manifest are
diff --git a/reports/resolver-refinement/audit/audit_summary.md b/archive/2026-09_resolver_experiments/resolver-refinement/audit/audit_summary.md
similarity index 100%
rename from reports/resolver-refinement/audit/audit_summary.md
rename to archive/2026-09_resolver_experiments/resolver-refinement/audit/audit_summary.md
diff --git a/reports/resolver-refinement/enhanced.sssom.md b/archive/2026-09_resolver_experiments/resolver-refinement/enhanced.sssom.md
similarity index 100%
rename from reports/resolver-refinement/enhanced.sssom.md
rename to archive/2026-09_resolver_experiments/resolver-refinement/enhanced.sssom.md
diff --git a/reports/resolver-refinement/enhanced.sssom.provenance.json b/archive/2026-09_resolver_experiments/resolver-refinement/enhanced.sssom.provenance.json
similarity index 100%
rename from reports/resolver-refinement/enhanced.sssom.provenance.json
rename to archive/2026-09_resolver_experiments/resolver-refinement/enhanced.sssom.provenance.json
diff --git a/reports/resolver-refinement/enhanced.sssom.tsv b/archive/2026-09_resolver_experiments/resolver-refinement/enhanced.sssom.tsv
similarity index 100%
rename from reports/resolver-refinement/enhanced.sssom.tsv
rename to archive/2026-09_resolver_experiments/resolver-refinement/enhanced.sssom.tsv
diff --git a/reports/resolver-refinement/enhanced/matcher_evaluation.md b/archive/2026-09_resolver_experiments/resolver-refinement/enhanced/matcher_evaluation.md
similarity index 100%
rename from reports/resolver-refinement/enhanced/matcher_evaluation.md
rename to archive/2026-09_resolver_experiments/resolver-refinement/enhanced/matcher_evaluation.md
diff --git a/reports/resolver-refinement/enhanced/matcher_evaluation.tsv b/archive/2026-09_resolver_experiments/resolver-refinement/enhanced/matcher_evaluation.tsv
similarity index 100%
rename from reports/resolver-refinement/enhanced/matcher_evaluation.tsv
rename to archive/2026-09_resolver_experiments/resolver-refinement/enhanced/matcher_evaluation.tsv
diff --git a/archive/README.md b/archive/README.md
new file mode 100644
index 0000000..f5ca3f0
--- /dev/null
+++ b/archive/README.md
@@ -0,0 +1,17 @@
+# archive/
+
+Finished one-off experiments, kept for the record. Nothing here is a current
+output, and no command regenerates it. Current results live in
+[reports/](../reports/README.md).
+
+| Folder | What it was |
+|---|---|
+| [2026-09_resolver_experiments/](2026-09_resolver_experiments/README.md) | Comparisons of the legacy marker matcher with the stricter token-to-PRO resolver, and the regression investigation that followed (Sept 10–18, 2026) |
+| [2026-09_literature_narratives/](2026-09_literature_narratives/README.md) | The seven Milestone 2 narrative literature reports, superseded by `literature/evidence.tsv` (all quotes migrated) |
+
+## Adding an experiment
+
+Use `archive/<YYYY-MM>_<topic>/` with a README that says what was run, what it
+showed, and how to reproduce it. Keep human-readable summaries (`.md`, `.tsv`);
+leave large machine-readable JSON/HTML out unless something depends on it, and
+say how to recover it from git history.
diff --git a/cell_type_reviews/_template.md b/cell_type_reviews/_template.md
index 4fa07b0..83fbd04 100644
--- a/cell_type_reviews/_template.md
+++ b/cell_type_reviews/_template.md
@@ -44,15 +44,21 @@ these from `marker_mappings/marker_protein_gene.csv`.
 
 ## 3. Literature support
 
-Every quote must be **verbatim** from a cached snippet or retrieved full text,
-with its source and citation-traversal run ID. Never paraphrase something into a
-quote. Record "no evidence found" explicitly rather than leaving it blank.
+Quotes live in [`literature/evidence.tsv`](../literature/evidence.tsv), one row
+per (cell type, marker, quote). **Don't copy quote text into this file**; list
+the evidence IDs instead, and read them in the generated views
+(`literature/by_cell_type/`, `literature/by_marker/`). To add new evidence, add
+rows to `evidence.tsv` (verbatim quote, PMID/DOI, `verified`), then run
+`uv run soulcap-evidence verify` and `uv run soulcap-evidence views`.
 
 Seed papers (from `Citation Mgr`): 
 
-| Marker / combination | Verdict | Quote | Source | Run |
-|----------------------|---------|-------|--------|-----|
-| | supported / contradicted / no evidence found | "…" | DOI / PMID | `reports/citation_traversal/<run_id>` |
+| Marker / combination | Verdict | Evidence IDs | Verified? |
+|----------------------|---------|--------------|-----------|
+| | supported / contradicted / no evidence found | `EV00001`, `EV00002` | yes / no / not_checked |
+
+Record "no evidence found" explicitly rather than leaving a row blank. Only rows
+with `verified = yes` count as checked against the source text.
 
 ## 4. Cell Ontology comparison
 
diff --git a/docs/README.md b/docs/README.md
new file mode 100644
index 0000000..0627fb4
--- /dev/null
+++ b/docs/README.md
@@ -0,0 +1,20 @@
+# docs/
+
+Detailed documentation. The [README](../README.md) is the short overview; these
+pages hold the full detail.
+
+| Page | Covers |
+|---|---|
+| [setup.md](setup.md) | Environment, MCP servers, Asta and PubMed API keys |
+| [pipeline.md](pipeline.md) | Each pipeline stage and its command: sheet sync, CL→PRO axioms, candidate matching, OAK lexical search, SSSOM export, ROBOT QC |
+| [marker_resolution.md](marker_resolution.md) | Token → PRO resolution rules, policies, lexical cache |
+| [matching_and_evaluation.md](matching_and_evaluation.md) | Audit dashboard, matcher evaluation, regression triage and follow-up |
+| [planning/](planning/) | Sprint backlog and semester plan (hand-maintained); agenda for the [12 Oct 2026 meeting](planning/2026-10-12_meeting_summary.md) |
+
+Related specs that live at the top level: [MARKER_SYNTAX.md](../MARKER_SYNTAX.md)
+(marker expression grammar) and [ROADMAP.md](../ROADMAP.md) (milestones).
+File-level docs live next to the files: [mappings/](../mappings/README.md),
+[marker_mappings/](../marker_mappings/README.md), [reports/](../reports/README.md).
+
+Documentation is hand-written. Update the relevant page in the same commit as
+the change it describes.
diff --git a/docs/marker_resolution.md b/docs/marker_resolution.md
new file mode 100644
index 0000000..a5841e8
--- /dev/null
+++ b/docs/marker_resolution.md
@@ -0,0 +1,287 @@
+# Marker resolution (token → PRO)
+
+How marker tokens from the sheet are resolved to Protein Ontology (PRO) terms, and when that resolution is withheld. The files themselves are described in [marker_mappings/README.md](../marker_mappings/README.md).
+
+## Alias/protein-aware matching and local candidate coverage
+
+The enhanced modes are explicit opt-ins; omitting the flags preserves the legacy
+marker scorer. They do not change curated mapping decisions. Candidate scoring,
+mapping evidence, SSSOM export, and the audit now share the same resolver when
+`--marker-map` is explicitly enabled for each command; defaults remain legacy.
+
+```bash
+uv run soulcap-match --batch --marker-map marker_mappings/marker_protein_gene.csv --term-cache reports/cl_lexical_cache.json --batch-out reports/candidate_cl_mappings_enhanced.tsv  # archived Sept run: archive/2026-09_resolver_experiments/
+uv run soulcap-evaluate --marker-map marker_mappings/marker_protein_gene.csv --term-cache reports/cl_lexical_cache.json --baseline SAVED_BASELINE.json --out-dir reports/evaluation-next
+uv run soulcap-audit
+```
+
+Marker resolution uses explicit registry aliases and exact PRO identity, preserving
+positive/negative and expression-level distinctions. Its sibling policy file,
+[marker_resolution.tsv](../marker_mappings/marker_resolution.tsv), must classify
+every normalized registry marker as `single_protein`, `protein_family`, `complex`,
+`reagent_gate`, or `unresolved`, with an explicit `allow`/`withhold` protein policy,
+rationale, source reference, and SHA-256 of the original registry rows. Runtime
+resolution does not interpret free-text notes to decide protein identity. Only
+single-protein policies with exactly one PRO ID can allow protein expansion.
+Missing, conflicting, or stale policies fail rather than silently guessing.
+
+Initial policies preserve existing single-PRO representations as computational
+assumptions, not biological sign-offs. CD3, CD8, CD15, CD16, and MR1 have conservative
+holds because the registry's component/family/reagent representation needs review;
+no source identifiers have been changed. Complex, family, and reagent policies
+cannot inherit a component-protein assertion through an alias. An explicit
+same-marker assertion without a component PRO remains distinguishable evidence.
+Related/broad ontology synonyms do not imply identity. No gene-symbol,
+cross-species, or protein-hierarchy equivalence is inferred.
+
+Compatible duplicate aliases with the same allowed PRO identity are merged;
+conflicting owners remain unresolved. Identical semantic clauses count once across
+required/ideal columns (required takes precedence), while contradictory signs,
+different levels, and distinct OR constraints remain separate. Original source
+spelling is retained for evidence display. After a registry edit, review and update
+the affected policy and its fingerprint; do not simply refresh hashes to bypass review.
+Resolution paths are recorded in candidate evidence; withheld cases are listed in
+evaluation JSON under `marker_resolution_issues`.
+
+Isolate resolver changes from lexical coverage and inspect detailed differences.
+The September 2026 run of these commands is archived in
+[archive/2026-09_resolver_experiments/resolver-refinement/](../archive/2026-09_resolver_experiments/resolver-refinement/README.md):
+
+```bash
+uv run soulcap-resolution-audit
+uv run soulcap-evaluate --out-dir reports/resolver-refinement/legacy
+uv run soulcap-evaluate --marker-map marker_mappings/marker_protein_gene.csv --out-dir reports/resolver-refinement/enhanced --baseline reports/resolver-refinement/legacy/matcher_evaluation.json
+uv run soulcap-sssom --marker-map marker_mappings/marker_protein_gene.csv --out reports/resolver-refinement/enhanced.sssom.tsv
+uv run soulcap-audit --marker-map marker_mappings/marker_protein_gene.csv --out-dir reports/resolver-refinement/audit
+```
+
+The [resolution audit](../reports/marker_resolution_audit.md) includes per-marker
+gains/losses and JSON with per-mapping before/after evidence. Case-normalized
+resolution covers 73 marker groups from 75 registry rows. Comparison runs use
+identical source/axiom snapshots and no lexical expansion; modes intentionally
+differ, so the general evaluation comparison flags them as non-equivalent runs.
+Enhanced SSSOM export requires a separate output path to protect the default export.
+The audit explicitly distinguishes export/audit mode differences from evidence drift.
+
+The local lexical cache contains active CL labels and exact synonyms from a local
+OAK SQLite snapshot, with a source-database hash. To rebuild from your own snapshot:
+
+```bash
+uv run soulcap-cache-terms --database PATH_TO_CL_DB --out reports/cl_lexical_cache.json
+```
+
+No network services are contacted. The cache extraction timestamp is not an
+ontology release date or upstream freshness check. Lexical candidates use the source
+full name (abbreviation fallback), never expected mapping targets: normalized exact
+matches first, then word overlap of at least 0.5, limited to 20 candidates per row.
+They are unioned with marker candidates and scored with the existing weights;
+missing axioms remain unknown, not supporting evidence. Invalid/no-qualified-marker
+profiles remain unscored. Single-profile CLI searches use `--subset` or `--parent`.
+
+The evaluation distinguishes targets absent from the global index from targets
+present but not retrieved for a row. Candidate-source labels, lexical evidence,
+and protein-resolution paths are exported in batch TSV and evaluation JSON.
+The original baseline and the controlled legacy/alias runs are archived in
+[archive/2026-09_resolver_experiments/](../archive/2026-09_resolver_experiments/README.md) (summaries only; JSON recoverable from git history).
+Mode/input changes make comparisons descriptive rather than equivalent-condition
+regression tests. Broader coverage alone does not establish better ranking.
+
+## Fully resolved cell types (`soulcap-resolved`)
+
+A SOULCAP cell type is **fully resolved** when every marker token in scope maps
+to exactly one PRO term: the token's policy in `marker_resolution.tsv` is
+`single_protein` / `allow`, and the token is not an ambiguous alias. These are
+the cell types whose marker definitions could be written as PRO axioms.
+
+| Rule | Columns in scope |
+|---|---|
+| **Strict** | All four: Required exclusion, Ideal exclusion, Required phenotypic, Ideal phenotypic |
+| **Lenient** | The two Required columns only |
+
+In both rules:
+
+- The `live/` gate is not a marker and is never counted.
+- A column in scope with a syntax error blocks resolution (its tokens can't be
+  read reliably).
+- A profile with **no** token in *Required phenotypic markers* is never
+  resolved. About 30 sheet rows (mostly T-cell memory/naive subsets) leave that
+  column empty and are defined only by their parent gate. Without this guard,
+  their generic exclusion panel (CD14/CD33/CD64/CD19/CD20/CD123) would make
+  them count as "resolved" even though none of their defining markers are in
+  the sheet.
+
+```bash
+uv run soulcap-resolved
+```
+
+This writes `reports/fully_resolved_cell_types.tsv` (one row per resolved cell
+type, with its PRO IDs, proposed CL mapping and marker evidence under the same
+policies), `reports/fully_resolved_cl_terms.tsv` (the unique CL terms reached)
+and `reports/fully_resolved_summary.md` (counts by match type, contradictions
+and whether the CL term has marker axioms, plus which tokens block the most cell
+types). It is descriptive only: it never labels a mapping confident and never
+changes a decision.
+
+## Decisions for David
+
+Prepared 2026-09-28 (tidy plan Phase 3). **No policy has been changed.** CD3
+and CD8 stay `withhold` until a decision is made. The reasons for every
+withheld token are in the `failure_category`, `specific_rationale`,
+`evidence_level` and `next_action` columns of
+[marker_resolution.tsv](../marker_mappings/marker_resolution.tsv), and in the
+last table of [marker_resolution_audit.md](../reports/marker_resolution_audit.md).
+
+### Evidence used
+
+- **Ontology terms** were looked up in OLS4 (PRO, GO, CHEBI) on 2026-09-28.
+- **CL usage** comes from [cl_pro_relationships.tsv](../reports/cl_pro_relationships.tsv)
+  (asserted axioms only) and a read-only query of the local CL database (for GO
+  terms, which that TSV does not cover).
+- **Antibody clones** come from the SOULCAP source paper OMIP-069
+  (PMC8132182, PMID 32830910, DOI 10.1002/cyto.a.24213 — Table 2, retrieved from Europe PMC).
+  Rows as printed there: `CD3 | BV510 | SK7 | Pan T cell, NKT‐Like cells`;
+  `CD8 | BUV805 | SK1 | CD8 T, NK, and NKT‐Like cells`;
+  `CD16 | BUV496 | 3G8 | …`; `HLA‐DR | PE‐Fire810 | L243 | …`;
+  `TCRγδ | PerCP‐eFluor 710 | B1.1 | Pan γδ T cell`; `CD57 | FITC | HNK‐1 | …`.
+  [ilc_markers.md](../archive/2026-09_literature_narratives/ilc_markers.md) also quotes a
+  lineage cocktail with `CD3-FITC (SK7)` (Bento et al. 2025), but that file's
+  quotes have not been checked against the paper. OMIP-060, -055, -020 and -084
+  are not open access in Europe PMC, so their clones were not checked.
+- **Clone targets**, checked on 2026-09-28 against the sources below (quotes
+  are exact; vendor pages were read as retrieved on that date):
+
+  | Clone | Verified target | Source and exact wording |
+  |---|---|---|
+  | SK7 (CD3) | CD3ε | Fisher Scientific listing for BD 557832: "The SK7 (Leu-4) monoclonal antibody specifically binds to the epsilon chain of the CD3 antigen/T-cell antigen receptor (TCR) complex." <https://www.fishersci.com/shop/products/cd3-mouse-anti-human-apc-cy7-clone-sk7-bd/BDB557832> |
+  | SK1 (CD8) | CD8α (both CD8αα and CD8αβ carry it) | Fisher Scientific listing for BD 340584: "The CD8 antibody recognizes the 32-kilodalton (kDa) α-subunit of a disulfide-linked bimolecular complex." <https://www.fishersci.com/shop/products/anti-cd8-apc-clone-sk1-bd/BDB340584> |
+  | 3G8 (CD16) | CD16a and CD16b | PMC12606087 (PMID 41219228): "For clarification, 3G8 is a known anti-CD16a/b mAb commercially available and with an epitope in the Fc recognition region". The original 3G8 paper (Fleit et al. 1982, PMID 6808506, DOI 10.1073/pnas.79.10.3275) was raised against the neutrophil receptor: "The number of sites for 3G8 Fab was 135,000 per neutrophil". |
+  | L243 (HLA-DR) | HLA-DR (not DQ or DP); **which chain, or whether the epitope needs the αβ dimer, is not verified** | Fisher Scientific listing for BD 335796: "reacts with a nonpolymorphic HLA-DR epitope and does not cross-react with HLA-DQ or HLA-DP molecules." <https://www.fishersci.com/shop/products/anti-hla-dr-apc-cy-7-clone-l243-g46-6-bd/BDB335796>. BioLegend's datasheet reportedly describes a conformational epitope on HLA-DRα; its pages could not be retrieved to check. |
+  | B1.1 (TCRγδ), HNK-1 (CD57) | Not checked | — |
+
+### CD3
+
+Used in 78 valid sheet rows: **43 as an exclusion (CD3−)**, 35 as an
+inclusion (CD3+). It is the only unresolved token for 16 cell types (14 of them
+via CD3−; "T cell" and "CD56+ T cell" via CD3+).
+
+| Option | Term | For CD3− (exclusion) | For CD3+ (inclusion) |
+|---|---|---|---|
+| A | CD3ε, PR:000001020 (PRO gene-level) | Matches CL: all 23 asserted CD3 axioms in CL are `lacks_plasma_membrane_part` CD3ε. A cell with no surface CD3 complex has no surface CD3ε. | Matches what an anti-CD3ε clone detects, but CL describes T cells with GO TCR complexes rather than CD3ε, so positive matches will be rare. |
+| B | CD3 family, PR:000001018 ("CD3 subunit with immunoglobulin domain": CD3δ, ε, γ) | Weaker than A: "lacks any member of a family" is harder to reason over, and CL never uses it. | Vaguer than A, and not used by CL. |
+| C | GO TCR complex, GO:0042101 (also GO:0042105 αβ, GO:0042106 γδ), which GO defines as associated with the CD3 complex | Would state the cell lacks a TCR complex. That is true for NK/B/ILC, but it is a different claim from "CD3 negative". | Matches how CL defines T cells (e.g. CL:0002419 mature T cell). Needs the resolver to accept GO IDs; today it is PRO-only. |
+| D | Keep withheld | — | — |
+
+PRO has **no general CD3 complex term**. Its only CD3 complex, PR:000025781, is
+the *phosphorylated* CD3ε:CD3γ dimer, which describes an activation state and
+is not suitable.
+
+**Suggested for discussion:** A for exclusion gates (it is exactly what CL
+already does). For inclusion gates, A or C. With A alone, the
+[fully resolved list](../reports/fully_resolved_summary.md) would go from 0 to
+16 cell types (13 Exact, 3 Broad, none with contradictions).
+
+### CD8
+
+Used in 28 valid sheet rows: 12 as CD8+, 16 as CD8−. CD8 exists on cells as a
+CD8αα homodimer or a CD8αβ heterodimer. The SK1 listing above states: "The
+majority of peripheral blood CD8 + T lymphocytes express an α/β heterodimer
+(Mr 32, 30 kDa), while CD8 + CD16 + natural killer (NK) lymphocytes and CD8 +
+T-cell receptor (TCR)-γ/δ + T lymphocytes express an α/α homodimer (Mr 30 kDa)."
+
+| Option | Term | For CD8− | For CD8+ |
+|---|---|---|---|
+| A | CD8α, PR:000001084 | Safe: no CD8α means neither CD8αα nor CD8αβ. CL has 27 asserted `lacks_plasma_membrane_part` CD8α axioms. | Exactly what an anti-CD8α clone detects; covers both forms. |
+| B | CD8β, PR:000001085 | Too weak: a CD8β− cell can still be CD8αα+. | Only right if the clone binds CD8β. CL does not use it. |
+| C | CD8αβ complex, PR:000025402 ("T cell receptor co-receptor CD8", exact synonym "CD8alphabeta", components CD8α + CD8β) | Too weak, for the same reason as B. | Over-claims: it excludes CD8αα+ cells. CL uses it on CL:0000625 (CD8+ αβ T cell). |
+| D | Keep withheld | — | — |
+
+**Suggested for discussion:** A in both directions. Matching SOULCAP CD8α+
+against CL's CD8αβ+ assertion is then *compatible*, not identical; the
+existing opt-in rule `whole_cd8_surface_positive_v1` already treats it that way.
+With A for CD8 plus A for CD3, the fully resolved list would reach 28 cell types.
+This choice also affects the CD8+ γδ T cell gap in
+[gaps.tsv](../reports/gaps.tsv): CL only models CD8αα+ γδ T cells in the
+intraepithelial branch.
+
+### Other withheld tokens needing a decision
+
+- **CD16:** use CD16a (PR:000001484) only, or both CD16a and CD16b
+  (PR:000001485)? The PRO term that CL and the registry use, PR:000001483, is
+  defined as the mouse Fcgr3 product or a 1:1 ortholog.
+  - The SOULCAP clone, 3G8, binds **both** CD16a and CD16b (see the clone
+    table above).
+  - CD16 appears mostly in the shared Ideal exclusion panel
+    `(CD15-|CD66b-) CD16-` (83 rows). That panel mirrors SOULCAP's own
+    Neutrophil definition (sheet row 22: `(CD15hi|CD66b+) CD193- CD16hi`),
+    and neutrophils carry CD16b: STEMCELL's 3G8 page describes "CD16b, an
+    ~48 kDa glycosylphosphatidylinositol (GPI)-anchored form expressed on
+    neutrophils, basophils and eosinophils"
+    (<https://www.stemcell.com/products/anti-human-cd16-antibody-clone-3g8.html>).
+  - So **"CD16a only" is likely wrong for exclusion gates**: a CD16− gate
+    measured with 3G8 excludes CD16b+ cells too. A faithful encoding would
+    be "lacks CD16a and lacks CD16b".
+- **HLA-DR:** DR α chain (PR:000002015, used in 6 CL axioms), or the generic
+  GO:0042613 MHC class II protein complex (used in 23 CL axioms, not
+  DR-specific)?
+- **Surface Ig, TCRαβ, TCRγδ:** CL already uses GO complex terms for these
+  (GO:0071738 IgD, GO:0071753 IgM, GO:0071735 IgG, GO:0042105, GO:0042106).
+  Adopting them needs the resolver to accept GO IDs. Is that acceptable?
+- **CD15 and CD57** are carbohydrate epitopes and stay withheld. PRO lists
+  "CD15" as a synonym of the FUT4 enzyme, and CL uses FUT4 for CD15 in 8
+  axioms. Should this go upstream as a CL/PRO issue, together with the
+  mouse-defined CD16 term?
+
+### Hypothetical: accepting GO complex terms
+
+Computed 2026-09-28 on scratch copies only; no policy or code was changed.
+Starting from CD3 → CD3ε and CD8 → CD8α (both allowed), TCRαβ/TCRγδ were
+mapped to GO:0042105 / GO:0042106 and the Ig classes to the GO immunoglobulin
+complex terms (IgA GO:0071745, IgD GO:0071738, IgE GO:0071742, IgG
+GO:0071735, IgM GO:0071753; IDs from OLS4). Lenient rule:
+
+| Scenario | Fully resolved | With a proposal | Unique CL terms |
+|---|---:|---:|---:|
+| CD3ε + CD8α | 28 | 22 | 19 |
+| + TCRαβ/γδ as GO complexes | 49 | 42 | 21 |
+| + Ig classes as GO complexes | 42 | 35 | 28 |
+| + both | **up to 63** | 55 | 30 |
+
+**63 is an upper bound, not a count of usable mappings.** The CL axiom
+snapshot has no GO complex axioms, so for GO-mapped tokens (TCRαβ, TCRγδ, the
+Ig classes) the evidence is always "unknown": a contradiction with CL could
+not be detected. Some of these cell types may drop out once CL's GO axioms are
+extracted and checked. In the last row the 55 proposals are 27 Exact and 28
+Broad; 43 of them map to a CL term that has marker axioms. After this, the remaining blockers
+are syntax errors (23 rows), CD16 (12), HLA-DR (4), CD57 (3) and CD15 (3).
+Strict stays at 1 (ILCp) in every scenario because of the shared Ideal
+exclusion panel.
+
+**Code change needed to accept GO complex IDs** (not made):
+
+1. `cl_pro.py`: the SPARQL queries only select objects with
+   `rdfs:isDefinedBy obo:pr.owl`. Add GO complex terms (e.g. a `UNION` over
+   `obo:go.owl` restricted to `GO:0032991` protein-containing complex
+   descendants), so `cl_pro_relationships.tsv` gains CL → GO axioms such as
+   CL:0000789 `has plasma membrane part` GO:0042105. Without this, GO-mapped
+   markers can never match or contradict anything.
+2. `marker_resolution.load()`: the registry ID must match `PR:[A-Za-z0-9]+`,
+   and only `single_protein` rows may be `allow`. Add a representation such as
+   `protein_complex_term` that may be `allow` with exactly one `GO:` ID (or add
+   a separate `complex_id` column to the registry, keeping `pro_id` PRO-only).
+3. `expand_axiom()` and the CL index key on the axiom's `pr` column. They need
+   no logic change once the TSV holds GO rows, but the column name and the
+   identity keys (`"protein:" + id`) should become ontology-neutral.
+4. Tests for each, plus a registry/policy review of every token switched to
+   a GO ID (the fingerprint rule applies).
+
+### Open question: inheriting parent-gate markers
+
+30 sheet rows leave *Required phenotypic markers* empty; almost all are T-cell
+memory or naive subsets whose defining markers (and lineage markers) are
+implied by their Parent gate. Today they can never be fully resolved.
+**Should a row with an empty Required column inherit its parent gate's markers?**
+This is not implemented. It would need the Parent column to name an existing
+row reliably (two rows use "CD4 TCRab T cell", which matches no Abbreviation),
+and it would still leave out markers such as CCR7 and CD45RA that no row in the
+chain states. The rows are listed in
+[reports/soulcap_feedback.tsv](../reports/soulcap_feedback.tsv), section b.
diff --git a/docs/matching_and_evaluation.md b/docs/matching_and_evaluation.md
new file mode 100644
index 0000000..b0c33ef
--- /dev/null
+++ b/docs/matching_and_evaluation.md
@@ -0,0 +1,105 @@
+# Audit, evaluation and regression tools
+
+Tools for checking the proposed mappings and measuring the matcher. None of them change mapping decisions. Every metric here measures agreement with *provisional* mappings, not biological accuracy.
+
+## Unified audit dashboard
+
+Generate an offline dashboard from the local data and mapping registries:
+
+```bash
+uv run soulcap-audit
+```
+
+Open [reports/audit_dashboard.html](../reports/audit_dashboard.html) in a browser.
+It includes searchable, filterable review tables for SOULCAP entities, proposed
+CL targets, prioritized findings, marker coverage, gaps, species evidence, and
+input provenance. Expand a row to inspect its evidence and source references.
+No server, network calls, or additional dashboard dependencies are required.
+
+The command also writes [audit_summary.md](../reports/audit_summary.md) and
+[audit_data.json](../reports/audit_data.json). Use `--root PATH` for another repository
+snapshot, `--out-dir PATH` for another output directory, or `--strict` to return
+exit code 1 when error findings exist (reports are still generated).
+
+The audit recomputes marker evidence without changing source data or mappings.
+Missing inputs are reported as unavailable, not zero. Local hashes and export
+evidence are checked for drift; upstream freshness is not checked. Historical
+agreement reports and family-level gaps are not silently joined to entity IDs.
+Mapping proposals and marker compatibility do **not** establish equivalence.
+
+## Matcher evaluation
+
+```bash
+uv run soulcap-evaluate
+uv run soulcap-audit
+```
+
+The first command writes `reports/matcher_evaluation.md`, `.json`, and `.tsv`;
+the second refreshes the dashboard's evaluation view. Evaluation is offline and
+uses the production matcher unchanged, including its name hints and tie order.
+It measures CL target retrieval, not the correctness of an equivalence relation.
+
+Existing mapping proposals automatically form a **provisional agreement** cohort.
+The separate [benchmark TSV](../mappings/matcher_benchmark.tsv) starts empty: no
+proposal is automatically certified as ground truth. Add manually reviewed cases
+with columns `subject_id`, `acceptable_cl_ids` (`|`-separated alternatives),
+`match_type` (`Exact`, `Broad`, `Narrow`, `Related`), `review_status` (`reviewed`
+or `provisional`), and `evidence_reference` (required for reviewed cases).
+One case represents a subject/relation within a cohort. An explicit provisional
+case overrides that subject/relation's proposal-derived targets. Review statuses
+in the proposal registry never automatically promote cases to the reviewed cohort.
+
+Top-1/3/5 hit rates and mean reciprocal rank include every cohort case in their
+denominators, with zero credit for unscorable profiles and absent targets. Empty
+cohorts report unavailable metrics. Best/worst tie bounds expose ordering
+sensitivity; disqualified candidates are retained and flagged, not endorsed.
+Exact/Broad/Narrow/Related results are reported separately. Profile drift requires
+review before scoring; benchmark targets must be re-reviewed if definitions change.
+
+To compare against a saved JSON baseline without overwriting it:
+
+```bash
+uv run soulcap-evaluate --baseline reports/matcher_evaluation.json --out-dir reports/evaluation-next
+```
+
+Use `--root PATH` or `--benchmark PATH` for other snapshots/case files. The JSON
+records input and matcher-source hashes. Input/configuration drift marks baseline
+comparisons non-equivalent; rank changes are descriptive, not significance tests.
+The dashboard reads the default report location and checks local hashes; a custom
+benchmark is unverified unless its contents match the default benchmark.
+Missing or malformed required inputs fail before reports are written.
+
+## Offline regression triage
+
+```bash
+uv run python -m soulcap_cl_mapping.regression_triage
+```
+
+Writes `regression_triage.md`, JSON evidence, and a per-case TSV under
+`reports/regression-triage/` (not currently committed; the September 2026 run is
+[archived](../archive/2026-09_resolver_experiments/regression-triage/README.md)). Optional
+`--root` and `--out-dir` select another snapshot or report location. This is a
+diagnostic tool, not a production matcher mode: it does not change policies,
+mapping decisions, scoring weights, or existing audit/evaluation reports.
+
+All eight combinations separate enhanced token-evidence additions, legacy
+token-evidence removals, and semantic-clause deduplication. Candidates, their order,
+source profiles, and scoring weights remain fixed; no lexical search is run.
+Both endpoints must reproduce the production matchers. The report includes ties,
+changed expected-target and competitor evidence, policy references, pairwise
+factor effects, and input/code hashes. These computational findings do not validate
+the provisional targets or establish biological correctness of a policy.
+
+## Evidence-reviewed regression follow-up
+
+The [steps 3–6 follow-up](../archive/2026-09_resolver_experiments/regression-followup/README.md) reviews the
+three lost top-five targets, retains a narrowly scoped whole-CD8 surface
+assertion in opt-in policy mode, and records controlled before/after results.
+Top-five provisional agreement remains 16/80; this is not a validated ranking
+improvement. Two proposed mapping relations lack sufficient support.
+
+[Resolver constraint examples](../mappings/marker_assertion_benchmark.json) run
+as regression tests. A [five-entity prospective reserve](../mappings/benchmark_reserve.json)
+is kept separate from development proposals and identical profiles. It still
+needs independent annotation; no gold-standard mappings or held-out accuracy
+are claimed. The report explains the remaining curator decisions.
diff --git a/docs/pipeline.md b/docs/pipeline.md
new file mode 100644
index 0000000..0e6132e
--- /dev/null
+++ b/docs/pipeline.md
@@ -0,0 +1,157 @@
+# Pipeline and commands
+
+How SOULCAP marker definitions become proposed CL mappings, one stage at a time. See the [README](../README.md#pipeline) for the diagram, [marker_resolution.md](marker_resolution.md) for the token-to-PRO step, and [matching_and_evaluation.md](matching_and_evaluation.md) for the audit and evaluation tools.
+
+## Input data
+
+The single source of truth is a
+[Google Sheet](https://docs.google.com/spreadsheets/d/1uWwczLxgbpWMmXycL8Thq5NVExzlib4A/edit)
+(ask for edit access).
+
+Key tabs:
+
+- **`Marker Combinations`** — master definition of SOULCAP cell types by
+  positive/negative flow-cytometry markers. The `OLS CL identifier` and
+  `CL Mapping Notes` columns are the targets this project populates. The marker
+  expression language used in this sheet is specified in
+  [MARKER_SYNTAX.md](../MARKER_SYNTAX.md).
+- **`Citation Mgr`** — reference papers per major cell type.
+
+**Do not hand-edit the local copies — edit the Google Sheet instead.** Pull the
+latest snapshot at any time with:
+
+```bash
+uv run soulcap-sync
+```
+
+This downloads the workbook to `data/soulcap_source.xlsx` and explodes each tab
+into a CSV under `data/` (e.g. `data/marker_combinations.csv`). The entire
+`data/` directory is a regenerable cache and is gitignored.
+
+Options:
+
+```bash
+uv run soulcap-sync --no-csv            # download the raw .xlsx only
+uv run soulcap-sync --sheet-id <id>     # pull a different sheet
+SOULCAP_SHEET_ID=<id> uv run soulcap-sync
+```
+
+> The sheet must be shared as *"anyone with the link can view"* for the
+> unauthenticated export to work.
+
+## CL ↔ PR (Cell Ontology → PRO) marker relationships
+
+The Cell Ontology already defines many cell types by their protein markers via
+logical axioms. To use these as a SOULCAP↔CL mapping reference, pull them from
+the [Ubergraph](https://ubergraph.apps.renci.org/sparql) SPARQL endpoint:
+
+```bash
+uv run soulcap-cl-pro
+```
+
+This regenerates two artifacts under `reports/`:
+
+- **`cl_pro_relationships.md`** — CL-centric: each cell type with its PR markers
+  grouped by sense (positive / negative / high / low), annotated with CD
+  synonyms and mouse/human UniProt IDs, flagging inferred-only edges.
+- **`cl_pro_relationships.tsv`** — one row per (cell, relation, PR) for diffing
+  across CL/PRO releases.
+
+```bash
+uv run soulcap-cl-pro --reports-dir other/   # write elsewhere
+uv run soulcap-cl-pro --endpoint <url>        # use a different SPARQL endpoint
+```
+
+## Candidate CL matching (`soulcap-match`)
+
+Validation, token extraction, and scoring share one phenotype AST. Boolean
+negation and expression levels are preserved. Malformed profiles are flagged
+without producing marker candidates; missing axioms remain unknown. Batch
+outputs include stable `subject_id` and specimen context so duplicate
+abbreviations cannot be merged accidentally. Token regeneration also refuses
+invalid source expressions. See [MARKER_SYNTAX.md](../MARKER_SYNTAX.md#4-implementation-semantics).
+
+The committed agreement TSV predates this parser/identity migration. Regenerate
+it with `soulcap-match --batch --lexical` before comparing it with current
+batch results; cached old lexical results cannot safely distinguish all
+duplicated source rows.
+
+Ranks CL terms against a SOULCAP marker profile, scored from
+`cl_pro_relationships.tsv`. Single-profile mode (paste the four marker columns
+for one cell type):
+
+```bash
+uv run soulcap-match --req-excl "CD14- CD3- CD19-" --req-pheno "CD45+ CD56+/hi" --parent "NK cell"
+```
+
+Batch mode scores every row of `data/marker_combinations.csv` in one pass:
+
+```bash
+uv run soulcap-match --batch                # -> reports/candidate_cl_mappings_batch.tsv
+uv run soulcap-match --batch --lexical       # + name-based OLS4 CL search and an
+                                              #   agreement report (reports/candidate_cl_mappings_agreement.tsv)
+```
+
+Marker-axiom scoring can only rank CL terms that already have a PR axiom in
+`cl_pro_relationships.tsv` — many CL terms (including some "obvious" parent
+classes) have none and are invisible to it. `--lexical` adds an independent
+name-based candidate per row; rows where both approaches agree are a much
+stronger signal than either alone. **Treat batch output as an unreviewed draft
+shortlist** — check the `contradictions`/`marker_conflict` columns before
+trusting a rank-1 pick, since shared exclusion markers can inflate scores for
+biologically wrong candidates.
+
+## OAK lexical/synonym matching (`soulcap-oak-match`)
+
+A second, independent lexical matcher using [OAK](https://incatools.github.io/ontology-access-kit/)
+(Ontology Access Kit) instead of the OLS4 REST API:
+
+```bash
+uv run soulcap-oak-match "Natural Killer Cell"
+uv run soulcap-oak-match "NK cell" --top 5
+```
+
+Uses OAK's `sqlite:obo:cl` adapter — a search-optimised local database that
+ranks exact label/synonym matches first by construction (OLS4's free-text
+relevance ranking, by contrast, can bury an exact match behind dozens of
+more-specific subtype variants). Downloads and caches a local CL database
+(~100MB) on first use; instant afterwards.
+
+## SSSOM mapping export (`soulcap-sssom`)
+
+The decision source is [mappings/curated_mappings.tsv](../mappings/curated_mappings.tsv).
+The [entity registry](../mappings/soulcap_entities.tsv) supplies permanent local
+SOULCAP IDs; [registry documentation](../mappings/README.md) explains identity
+resolution, migration aliases, review status, and evidence fields.
+
+```bash
+uv run soulcap-sssom
+```
+
+This generates `reports/candidate_cl_mappings.sssom.tsv`, the readable
+`reports/candidate_cl_mappings.md`, and an input-hash provenance sidecar.
+The original detailed rationale, including sheet-confirmation notes, is
+preserved in [the narrative archive](../reports/candidate_cl_mappings_narrative.md).
+
+Evidence is evaluated against each source phenotype: required-marker matches,
+contradictions, unknown clauses, ideal-marker conflicts, and direct versus
+inferred support. Current sheet confirmation, lexical evidence, and literature
+evidence remain separate. Missing or malformed profiles are explicitly flagged.
+Numeric confidence is omitted pending calibration, and all mappings remain
+proposals requiring review. Marker compatibility alone does not prove that two
+cell-type definitions are equivalent.
+
+Use `--source`, `--mappings`, `--tsv`, `--out`, and `--review-out` to
+select inputs and output locations. Existing abbreviation-based subject IDs
+are retained in the registry's `legacy_subject_id` column.
+
+## ROBOT ontology QC
+
+`.github/workflows/robot-qc.yml` runs on every PR and audits upstream CL —
+downloads CL's `cl-base.owl` (import-free release artifact) and runs
+`robot report` + `robot reason` (ELK) on it standalone, independent of
+anything in this repo. Catches pre-existing CL bugs (e.g. duplicate
+equivalence/subclass axioms) worth reporting upstream. It never touches our
+own candidate mappings — those stay as SSSOM, a proposal for human review,
+not something this repo should unilaterally convert into OWL axioms and merge
+into CL as if already accepted.
diff --git a/docs/planning/2026-10-12_meeting_summary.md b/docs/planning/2026-10-12_meeting_summary.md
new file mode 100644
index 0000000..90bc4d9
--- /dev/null
+++ b/docs/planning/2026-10-12_meeting_summary.md
@@ -0,0 +1,96 @@
+# SOULCAP ↔ CL: agenda for 12 October 2026
+
+For Dr. Osumi-Sutherland and Dr. Diehl. Follows up the 28 September meeting.
+Branch `Alzion_G_717`. All mapping decisions and CL IDs are unchanged; everything
+below is documentation, analysis or a proposal.
+
+## 1. Repo tidied (done)
+
+- `reports/` holds current outputs only (44 MB → 13.5 MB), each listed in
+  [reports/README.md](../../reports/README.md). Old experiment runs and the
+  literature narratives are in [archive/](../../archive/README.md).
+- Short [README](../../README.md) with a pipeline diagram, key files, and a
+  "mapping machinery" section (code vs agent skills vs human review). Every
+  folder has a README; detail moved to [docs/](../README.md).
+- File-placement rules and a "never write identifiers from memory" rule in
+  CLAUDE.md. Tests fail on a broken doc link or an unlisted report.
+
+## 2. Marker decisions (the "unique list" depends on these)
+
+**Today no SOULCAP cell type is fully resolved** (every Required marker → one
+PRO term). Details in [docs/marker_resolution.md](../marker_resolution.md#decisions-for-david).
+
+| Decision | Proposal | Cell types unlocked (lenient) |
+|---|---|---:|
+| **CD3** | CD3ε (PR:000001020). SOULCAP's clone SK7 binds CD3ε, and CL already uses CD3ε in all 23 CD3-negative axioms. No general CD3 complex term exists in PRO. | 16 |
+| **+ CD8** | CD8α (PR:000001084). Clone SK1 binds CD8α, so it covers CD8αα and CD8αβ; PR:000025402 is CD8αβ only. | 28 |
+| **+ TCRαβ/γδ, Ig classes** | GO complex terms, as CL already uses (GO:0042105, GO:0042106, GO:0071738 …). Needs a resolver change to accept GO IDs. | **up to 63**, an upper bound: CL's GO axioms aren't extracted yet, so contradictions can't be checked |
+| **CD16** | Clone 3G8 binds CD16a and CD16b, and CD16 is used mainly in the neutrophil-exclusion panel. So for exclusion gates, "lacks CD16a and CD16b", not "CD16a only". | — |
+| **HLA-DR** | DRα (PR:000002015) or GO:0042613 MHC class II complex? L243 binds HLA-DR (not DQ/DP); its chain specificity is not verified. | — |
+
+Also: 8 withheld "markers" are fragments of spaced names (`TCR V delta 1+`,
+`MR1 Tetramer+`), not real markers.
+
+## 3. Proposed definition of "confident" (not applied)
+
+A mapping is confident when it is (1) fully resolved (lenient), (2) has no
+contradicted markers, (3) maps to a CL term with a directly asserted marker
+axiom that a Required marker matches, (4) is Exact, (5) has a second signal
+(sheet CL ID or lexical match agrees), and (6) is signed off by a curator.
+Rules 1–5 are computable; rule 6 is the human gate. With CD3ε alone, about 10
+cell types meet rules 1–4. **Question:** is this the right bar for an
+experimental CL import?
+
+## 4. SOULCAP feedback draft (not sent)
+
+[reports/soulcap_feedback.tsv](../../reports/soulcap_feedback.tsv):
+1 general rule (no spaces inside marker names); 28 cells in 24 rows with
+syntax problems, 23 with a suggested fix that passes the grammar; 30 rows with
+an empty *Required phenotypic* column. **Question:** format and cadence for
+sending this to SOULCAP?
+
+## 5. Parent-gate question
+
+Those 30 rows (mostly T-cell memory/naive subsets) are defined only by their
+Parent gate, and their defining markers (e.g. CCR7, CD45RA) aren't in the
+Sheet. **Should a row with an empty Required column inherit its parent gate's
+markers?** Parent names don't always match an existing row, which would need
+fixing first. Example: CCR7 now has verified evidence (EV00264, EV00265), but
+no SOULCAP row can use it, because the T-cell memory subsets leave *Required
+phenotypic* empty.
+
+## 6. CL/PRO issue candidates (not filed)
+
+In [reports/cl_term_issues.md](../../reports/cl_term_issues.md#candidates-for-review-not-filed):
+
+- **CD16**: CL uses PR:000001483, which PRO defines by the *mouse* Fcgr3 gene,
+  including on three human-labelled terms (CL:0000938, CL:0000939, CL:0002343).
+  Human CD16a/b are PR:000001484/PR:000001485.
+- **CD15**: CL (8 axioms) and PRO treat CD15 as the FUT4 enzyme. CD15 is the
+  Lewis X carbohydrate that FUT4 makes.
+
+**Question:** worth raising upstream?
+
+## 7. Literature evidence
+
+[literature/evidence.tsv](../../literature/evidence.tsv): 254 active rows
+(188 quotes, 51 markers, 35 papers), one per cell type, marker and quote.
+
+- Checked against Europe PMC full text: **171 exact**, 6 exact apart from
+  final punctuation, 31 not found exactly, 46 with no open-access text.
+- The 13 unverified quotes from the two WebFetch-extracted files: 7 superseded
+  by exact sentences from the papers (old rows kept); 2 that spliced two
+  definitions removed and replaced by exact rows (one per marker named); 2 removed with no
+  replacement because the extraction added text; 2 left unverified (EV00127,
+  EV00144). Removals are logged in `removed_evidence.tsv`.
+- Each row lists unreviewed candidate SOULCAP cell types (220 of 254 rows);
+  `subject_id` stays blank until reviewed. 15 quotes couldn't be placed.
+- Evidence by source type, rows (papers): application_study 92 (15),
+  review 74 (10), atlas 32 (3), sorting_paper 31 (5), panel_or_method 25 (2).
+  Review coverage is thin (10 papers); NK cell reviews are being added next
+  in [literature/reviews/](../../literature/reviews/README.md).
+
+## On hold until after this meeting
+
+Plan phases 5 (JSON for David's draft), 7 (confidence columns) and 8 (CL
+marker-addition candidates, SOULCAP feedback spreadsheet).
diff --git a/reports/fall_2026_semester_plan.html b/docs/planning/fall_2026_semester_plan.html
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diff --git a/reports/fall_2026_sprint_backlog.md b/docs/planning/fall_2026_sprint_backlog.md
similarity index 97%
rename from reports/fall_2026_sprint_backlog.md
rename to docs/planning/fall_2026_sprint_backlog.md
index 845f806..a37cf14 100644
--- a/reports/fall_2026_sprint_backlog.md
+++ b/docs/planning/fall_2026_sprint_backlog.md
@@ -3,7 +3,7 @@
 Sprint-level breakdown of the Fall 2026 (Oct–Dec) working plan prepared for
 Dr. Alexander Diehl, baselined 2026-09-18. Every item from that plan is
 expanded into concrete sub-tasks with acceptance criteria, grounded in
-[ROADMAP.md](../ROADMAP.md), [gaps.tsv](gaps.tsv), and issues #5, #6, #7,
+[ROADMAP.md](../../ROADMAP.md), [gaps.tsv](../../reports/gaps.tsv), and issues #5, #6, #7,
 #12, #13, #14 as they stood on that date. **No scope beyond those sources** —
 this is a task breakdown of already-agreed work, not a new plan. An
 interactive version of this backlog also exists as a published Claude
@@ -139,7 +139,7 @@ evidence review; curator sign-off pending" — three flagged mappings and five
 marker-representation holds, none of them a coding task.
 
 1. Walk a curator through the three flagged cases in
-   `reports/regression-followup/mapping_review.tsv`: SC000063 (CL:0000625,
+   `archive/2026-09_resolver_experiments/regression-followup/mapping_review.tsv`: SC000063 (CL:0000625,
    Broad — lineage mismatch), SC000067 (CL:0000625, Exact — OR-gate
    equivalence unconfirmed), SC000073 (CL:0000803, Exact — missing tissue
    context).
@@ -195,7 +195,7 @@ lane per the existing division of labor. Monocyte doubles as evidence for
    reachable, falling back to `soulcap-europepmc` when it isn't.
 3. Mine the `OMIPs` tab as a secondary source when the reference set alone
    comes up short.
-4. Write `reports/literature/<category>_markers.md` with verbatim,
+4. Add rows to `literature/evidence.tsv` (formerly `literature/<category>_markers.md`) with verbatim,
    source-checked quotes — the PreToolUse hook blocks the write if any quote
    isn't in the snippet cache.
 5. For monocyte specifically: cross-reference #12's requested corrections
@@ -313,7 +313,7 @@ September's snapshot as the standing reference.
    `audit_summary.md`, and `audit_data.json`.
 2. Re-run `uv run soulcap-evaluate` for a refreshed matcher evaluation report.
 3. Diff both against the September baselines in
-   `reports/regression-followup/` and `reports/resolver-refinement/` — any
+   `archive/2026-09_resolver_experiments/regression-followup/` and `archive/2026-09_resolver_experiments/resolver-refinement/` — any
    metric regression must be explained, not silently accepted.
 
 **Acceptance criteria:** dashboard and evaluation artifacts carry a December
diff --git a/docs/setup.md b/docs/setup.md
new file mode 100644
index 0000000..b70689b
--- /dev/null
+++ b/docs/setup.md
@@ -0,0 +1,65 @@
+# Setup
+
+Full setup for this repository. The [README](../README.md#quick-start) has the short version.
+
+## Setup
+
+### 1. Clone this repo
+
+### 2. Install UV and create the environment
+
+Install [UV](https://docs.astral.sh/uv/), then use it to create a virtual
+environment with the project dependencies:
+
+```bash
+# Install UV (macOS / Linux)
+curl -LsSf https://astral.sh/uv/install.sh | sh
+
+# Create the virtual environment and install dependencies
+uv sync
+```
+
+### 2. MCP servers (Claude Code)
+
+The MCP servers used by this project — `Asta_semanticscholar` (literature
+search), `artl-mcp`, and `ols4` — are defined in the committed
+[.mcp.json](../.mcp.json) and enabled for the project in the committed
+`.claude/settings.json`. No per-developer action is needed to enable them.
+
+### 3. Configure the Asta API token
+
+The [Asta](https://allenai.org/asta/resources/mcp) tools require a personal API
+key. Request one from <https://allenai.org/asta/resources/mcp>, then add it to
+your **local, gitignored** Claude Code settings at
+`.claude/settings.local.json`:
+
+```json
+{
+  "env": {
+    "ASTA_API_KEY": "{token}"
+  }
+}
+```
+
+Replace `{token}` with your actual key. Claude Code reads this `env` block at
+startup and expands `${ASTA_API_KEY}` into the `x-api-key` header in
+[.mcp.json](../.mcp.json).
+
+`.claude/settings.local.json` is gitignored and must **never** be committed —
+it is the only place the secret lives. Restart Claude Code after editing it so
+the key is picked up.
+
+### Optional: PubMed (NCBI E-utilities)
+
+`soulcap-pubmed` (`src/soulcap_cl_mapping/pubmed_search.py`) works keyless,
+same as `soulcap-europepmc`. An NCBI API key just raises the rate limit from
+3 to 10 requests/second. If you want one, generate it from your
+[NCBI account settings](https://www.ncbi.nlm.nih.gov/account/settings/) under
+**API Key Management**, then add it to the **local, gitignored** `.env`:
+
+```
+PUBMED_API_KEY={token}
+```
+
+Unlike `ASTA_API_KEY`, this is read directly by Python (via `python-dotenv`),
+not through Claude Code's MCP `env` substitution — it isn't an MCP server key.
diff --git a/literature/README.md b/literature/README.md
new file mode 100644
index 0000000..3a38857
--- /dev/null
+++ b/literature/README.md
@@ -0,0 +1,101 @@
+# literature/
+
+Literature evidence that SOULCAP's markers define the cell types they claim to
+(Milestone 2). Every quote is copied verbatim from its source and carries a
+PMID, DOI or PMCID. Moved here from `reports/literature/` on 2026-09-28.
+
+## What's here
+
+| Path | What it is | Type |
+|---|---|---|
+| [evidence.tsv](evidence.tsv) | **The evidence table.** One row per (cell type, marker, quote). A quote that supports several markers appears once per marker. | Curated (edit by hand, then re-run `verify` and `views`) |
+| [removed_evidence.tsv](removed_evidence.tsv) | Rows taken out of `evidence.tsv` (e.g. the extraction added text that is not in the paper), with the date, the reason and the full original row. Never delete evidence silently. | Curated |
+| [evidence_unplaced.tsv](evidence_unplaced.tsv) | Quotes from the narrative files that could not be placed mechanically (no marker, several markers not mentioned in the quote, no citation, no attribution line). Kept for a curator to place, never guessed. | Generated once by `migrate`; then curated |
+| `by_cell_type/`, `by_marker/` | Read-only views of `evidence.tsv`. | Generated by `uv run soulcap-evidence views`; do not edit |
+| [reviews/](reviews/README.md) | Review papers (index in `reviews.tsv`), starting with NK cells. | Curated |
+| (archived) | The original narrative reports, one per cell-type family, are in [archive/2026-09_literature_narratives/](../archive/2026-09_literature_narratives/README.md). All their quotes were migrated into `evidence.tsv` on 2026-09-28. | Historical |
+
+Not yet covered: monocyte, neutrophil, basophil, mast cell, granulocyte, MDSC
+(see [ROADMAP.md](../ROADMAP.md) Milestone 2).
+
+## evidence.tsv columns
+
+`evidence_id` (stable, `EVnnnnn`), `subject_id` (a SOULCAP ID; blank until a
+curator assigns one), `candidate_subject_ids` and `candidate_status`
+(SOULCAP cell types in the family whose definition uses the marker; always
+`unreviewed` until a curator confirms one as `subject_id`; `none_found` if no
+family member uses the marker), `cell_type_label` (the family the source
+covers),
+`marker_token`, `level` (blank until curated), `supports_or_contradicts`
+(`supports`, or `qualifies` for quotes under a discrepancy note), `quote`,
+`pmid`, `doi`, `pmcid`, `first_author_year`, `species`, `tissue`,
+`source_type`: `sorting_paper` (the paper's main contribution is a gating or
+sorting strategy for the population), `panel_or_method` (OMIP panels and
+standardization papers), `application_study` (primary research that uses flow
+phenotyping in a disease or functional context), `review`, or `atlas`
+(single-cell or high-dimensional surveys),
+`source_type_basis` (`pubmed_publication_type: …` when PubMed tags the paper
+as a Review, otherwise `proposed; …` with PubMed's types for reference;
+proposed types still need a curator's check), `source_file`, `source_line`, `section`, `notes`
+(e.g. "Table 1"), `verified`, `verification_note`, `superseded_by` (the
+`evidence_id` of the exact replacement row, if any), `added_on`.
+
+## Verification
+
+`uv run soulcap-evidence verify` checks each quote against the open-access full
+text in Europe PMC:
+
+- `verified = yes`: every quoted fragment appears **exactly** in the full text
+  (only whitespace is collapsed and Markdown bold/italic markers removed).
+- `verified = exact_except_trailing_punctuation`: exact except the final
+  `.`, `,`, `;` or `:` (usually a figure or reference marker in the paper at
+  that point). Kept separate from paraphrases.
+- `verified = no`: checked and not found exactly. `verification_note` says
+  whether it was a near-match (differs only in case, dashes or quote marks) or
+  how far it matched before diverging. **Quotes are never reworded to make them
+  match**; a curator decides whether the quote or the citation is wrong.
+- `verified = not_checked`: no open-access full text was available.
+
+Quotes from `ilc_markers.md` and `t_cell_markers.md` were extracted with
+WebFetch (an AI model copying page text), so they start as `no` and become
+`yes` only through an exact full-text match; they are never `not_checked`.
+
+## Quote conventions
+
+- A quote is one or more **exact** spans from the paper, each in double quotes.
+  Spans joined with ` … ` are separate fragments of the same passage, with
+  something omitted in between (usually reference numbers or a sentence
+  break); each fragment must match the paper exactly on its own, e.g.
+  `"CD161, which is known to be present on NK cells, NKT cells, and T cells," … "is also expressed by human ILCs"`.
+- A quote is never edited. If it turns out not to match the paper, add a new
+  row with the exact text (source `Europe PMC full text`, no `source_file`)
+  and set the old row's `superseded_by` to the new `evidence_id`. Superseded
+  rows stay in the table for provenance but are left out of the views.
+- If a quote has no faithful replacement (e.g. text was added that the paper
+  doesn't contain), move the row to `removed_evidence.tsv` with the reason.
+
+## Rules
+
+- Quotes are verbatim, never paraphrased, and always cited. If a paper could
+  not be accessed, say so; never quote from memory or from an abstract you
+  have not retrieved. Never write an identifier from memory.
+- Paywalled papers are listed as inaccessible. Do not commit paywalled PDFs.
+- "No evidence found" is a valid, recorded result.
+- The `pro-marker-species-support`, `mapping-audit` and `soulcap-cl-matching`
+  skills read `evidence.tsv`; older rows of
+  [reports/pro_marker_species_support.tsv](../reports/pro_marker_species_support.tsv)
+  cite the archived narratives by path.
+- **Candidate cell types** come from a mechanical, unreviewed rule in
+  `literature_evidence.py` (`FAMILY_ROOTS`): each Sheet row's Parent chain is
+  followed to its root, and a dangling parent name counts as the root.
+  γδ T cells are T-cell-family rows with `TCRgd+`; MAIT and iNKT are the rows
+  with those abbreviations. The per-cell-type views label them "candidate".
+
+## Commands
+
+```bash
+uv run soulcap-evidence migrate     # one-off: narrative files -> evidence.tsv (refuses to overwrite; --force)
+uv run soulcap-evidence candidates  # candidate SOULCAP cell types per row (needs soulcap-sync data/)
+uv run soulcap-evidence verify    # check quotes against Europe PMC full text (~7 min)
+uv run soulcap-evidence views     # regenerate by_cell_type/ and by_marker/
+```
diff --git a/literature/by_cell_type/b-cell.md b/literature/by_cell_type/b-cell.md
new file mode 100644
index 0000000..9bb02a5
--- /dev/null
+++ b/literature/by_cell_type/b-cell.md
@@ -0,0 +1,304 @@
+# B cell
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## CD10
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000028 (Transitonal B cell 1 and 2), SOULCAP:SC000030 (Transitional B cell 3), SOULCAP:SC000031 (Naive B cell), SOULCAP:SC000032 (Double Negative B cells), SOULCAP:SC000033 (Double Negative B cell 1), SOULCAP:SC000034 (Double Negative B cell 2), SOULCAP:SC000035 (Double Negative B cell 3), SOULCAP:SC000036 (Double Negative B cell 4)
+
+> "These cells express IgD and CD10 alongside the IgM BCR so can be identified as IgD+ CD27−CD10hi/+"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00014` · verified: yes
+
+> "T1 (CD38+++CD24hiCD10++IgDlo/−), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00015` · verified: yes
+
+> "transitional (IgD+CD27−CD10+), and naïve (IgD+CD27−CD10−)"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00016` · verified: yes
+
+> "CD21lo Tr cells expressed higher levels of markers of the early transitional compartment (IgM, CD24, CD10), but less CD21 and CXCR5"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00017` · verified: not_checked
+
+## CD11c
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000023 (B cell), SOULCAP:SC000024 (Antibody Secreting Cell), SOULCAP:SC000025 (Plasmablast), SOULCAP:SC000026 (Plasma Cell), SOULCAP:SC000028 (Transitonal B cell 1 and 2), SOULCAP:SC000029 (Mature B cell), SOULCAP:SC000030 (Transitional B cell 3), SOULCAP:SC000031 (Naive B cell), SOULCAP:SC000032 (Double Negative B cells), SOULCAP:SC000033 (Double Negative B cell 1), SOULCAP:SC000034 (Double Negative B cell 2), SOULCAP:SC000035 (Double Negative B cell 3), SOULCAP:SC000036 (Double Negative B cell 4), SOULCAP:SC000037 (Memory B cell), SOULCAP:SC000038 (IgD only Memory B cell), SOULCAP:SC000039 (Unswitched Memory B cell), SOULCAP:SC000040 (IgM-only Memory B cell), SOULCAP:SC000041 (Switched Memory B cell), SOULCAP:SC000042 (IgA-Class Switched B cell), SOULCAP:SC000043 (IgG-Class Switched B cell), SOULCAP:SC000044 (IgE-Class Switched B cell)
+
+> "DN2 B cells are a unique double-negative population (IgD−CD27−) that displays extrafollicular characteristics, such as the lack of CXCR5 and CD62L expression."
+
+— Sachinidis & Garyfallos 2021 (PMID:34964023; DOI:10.31138/mjr.32.3.192; PMCID:PMC8693305) · `EV00042` · verified: yes
+
+> "CD19+IgD−CD27−CD21− CD11c+ T-bet+CXCR5−"
+
+— Sachinidis & Garyfallos 2021 (PMID:34964023; DOI:10.31138/mjr.32.3.192; PMCID:PMC8693305) · `EV00043` · verified: no
+
+> "DN1: CD11c− CD21+" / "DN2: CD11c+ CD21−" / "DN3: CD11c− CD21−"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00044` · verified: not_checked
+
+> "six distinct circulating MBC phenotypes were found that were definable based on the combinatorial expression of CD27, CD73, CD95, CD19, CD11c, and the CD45 isoform CD45RB"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00045` · verified: yes
+
+## CD138
+
+**Candidate SOULCAP cell types (unreviewed):** none found
+
+> "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired"
+
+— Griffin & Rothstein 2012 (PMID:22654880; DOI:10.3389/fimmu.2012.00122; PMCID:PMC3360193) · `EV00036` · verified: yes
+
+> "ASC responses in ICU-C patients were highly enriched in more mature CD138+ cells relative to both OUT-C and HDs."
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00037` · verified: not_checked
+
+> "**CD138neg ASC**: CD138−" and "**CD138pos ASC**: CD138+"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00038` · verified: not_checked
+
+## CD14
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000023 (B cell), SOULCAP:SC000024 (Antibody Secreting Cell), SOULCAP:SC000025 (Plasmablast), SOULCAP:SC000026 (Plasma Cell), SOULCAP:SC000028 (Transitonal B cell 1 and 2), SOULCAP:SC000029 (Mature B cell), SOULCAP:SC000030 (Transitional B cell 3), SOULCAP:SC000031 (Naive B cell), SOULCAP:SC000032 (Double Negative B cells), SOULCAP:SC000033 (Double Negative B cell 1), SOULCAP:SC000034 (Double Negative B cell 2), SOULCAP:SC000035 (Double Negative B cell 3), SOULCAP:SC000036 (Double Negative B cell 4), SOULCAP:SC000037 (Memory B cell), SOULCAP:SC000038 (IgD only Memory B cell), SOULCAP:SC000039 (Unswitched Memory B cell), SOULCAP:SC000040 (IgM-only Memory B cell), SOULCAP:SC000041 (Switched Memory B cell), SOULCAP:SC000042 (IgA-Class Switched B cell), SOULCAP:SC000043 (IgG-Class Switched B cell), SOULCAP:SC000044 (IgE-Class Switched B cell)
+
+> "B cells were enriched using negative selection of CD2, CD3, CD14, CD16, CD36, CD42b, CD56, CD66b and CD123."
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00051` · verified: not_checked
+
+> "Cells were gated as CD3−CD14−CD16−CD19+CD38+CD27+ single live cells"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00054` · verified: not_checked
+
+> "a population of enriched B cells (CD3−CD14−) was collected"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00056` · verified: yes
+
+## CD185
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000033 (Double Negative B cell 1), SOULCAP:SC000034 (Double Negative B cell 2), SOULCAP:SC000035 (Double Negative B cell 3), SOULCAP:SC000036 (Double Negative B cell 4)
+
+> "The CXCR5+ subgroup, now known as DN1, is the DN sub-population that expands in elderly healthy individuals, while the CXCR5- subgroup constitutes the extrafollicular DN2 subset."
+
+— Sachinidis & Garyfallos 2021 (PMID:34964023; DOI:10.31138/mjr.32.3.192; PMCID:PMC8693305) · `EV00046` · verified: no
+
+> "DN2 B cells are a unique double-negative population (IgD−CD27−) that displays extrafollicular characteristics, such as the lack of CXCR5 and CD62L expression."
+
+— Sachinidis & Garyfallos 2021 (PMID:34964023; DOI:10.31138/mjr.32.3.192; PMCID:PMC8693305) · `EV00047` · verified: yes
+
+> "CD19+IgD−CD27−CD21+ CD11c− T-bet− CXCR5+"
+
+— Sachinidis & Garyfallos 2021 (PMID:34964023; DOI:10.31138/mjr.32.3.192; PMCID:PMC8693305) · `EV00048` · verified: no
+
+> "CD21lo Tr cells expressed higher levels of markers of the early transitional compartment (IgM, CD24, CD10), but less CD21 and CXCR5"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00049` · verified: not_checked
+
+> "a decrease in follicular homing predisposition through CXCR5 and a corresponding increase in CXCR3"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00050` · verified: not_checked
+
+## CD19
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000023 (B cell), SOULCAP:SC000024 (Antibody Secreting Cell), SOULCAP:SC000025 (Plasmablast), SOULCAP:SC000026 (Plasma Cell), SOULCAP:SC000028 (Transitonal B cell 1 and 2), SOULCAP:SC000029 (Mature B cell), SOULCAP:SC000030 (Transitional B cell 3), SOULCAP:SC000031 (Naive B cell), SOULCAP:SC000032 (Double Negative B cells), SOULCAP:SC000033 (Double Negative B cell 1), SOULCAP:SC000034 (Double Negative B cell 2), SOULCAP:SC000035 (Double Negative B cell 3), SOULCAP:SC000036 (Double Negative B cell 4), SOULCAP:SC000037 (Memory B cell), SOULCAP:SC000038 (IgD only Memory B cell), SOULCAP:SC000039 (Unswitched Memory B cell), SOULCAP:SC000040 (IgM-only Memory B cell), SOULCAP:SC000041 (Switched Memory B cell), SOULCAP:SC000042 (IgA-Class Switched B cell), SOULCAP:SC000043 (IgG-Class Switched B cell), SOULCAP:SC000044 (IgE-Class Switched B cell)
+
+> "Mature B cells typically express both CD19 and CD20."
+
+— Griffin & Rothstein 2012 (PMID:22654880; DOI:10.3389/fimmu.2012.00122; PMCID:PMC3360193) · `EV00001` · verified: yes
+
+> "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired"
+
+— Griffin & Rothstein 2012 (PMID:22654880; DOI:10.3389/fimmu.2012.00122; PMCID:PMC3360193) · `EV00003` · verified: yes
+
+> "CD19+ B cells were then enriched to >98% using CD19 microbead magnetic separation"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00005` · verified: yes
+
+> "to positively select intact cells (Ir191+Ir193+), to positively select live cells (Rh103−Ir191+Ir193+), and to identify CD19+ and/or CD20+ B cells"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00006` · verified: no
+
+## CD20
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000023 (B cell), SOULCAP:SC000024 (Antibody Secreting Cell), SOULCAP:SC000025 (Plasmablast), SOULCAP:SC000026 (Plasma Cell), SOULCAP:SC000028 (Transitonal B cell 1 and 2), SOULCAP:SC000029 (Mature B cell), SOULCAP:SC000030 (Transitional B cell 3), SOULCAP:SC000031 (Naive B cell), SOULCAP:SC000032 (Double Negative B cells), SOULCAP:SC000033 (Double Negative B cell 1), SOULCAP:SC000034 (Double Negative B cell 2), SOULCAP:SC000035 (Double Negative B cell 3), SOULCAP:SC000036 (Double Negative B cell 4), SOULCAP:SC000037 (Memory B cell), SOULCAP:SC000038 (IgD only Memory B cell), SOULCAP:SC000039 (Unswitched Memory B cell), SOULCAP:SC000040 (IgM-only Memory B cell), SOULCAP:SC000041 (Switched Memory B cell), SOULCAP:SC000042 (IgA-Class Switched B cell), SOULCAP:SC000043 (IgG-Class Switched B cell), SOULCAP:SC000044 (IgE-Class Switched B cell)
+
+> "Mature B cells typically express both CD19 and CD20."
+
+— Griffin & Rothstein 2012 (PMID:22654880; DOI:10.3389/fimmu.2012.00122; PMCID:PMC3360193) · `EV00002` · verified: yes
+
+> "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired"
+
+— Griffin & Rothstein 2012 (PMID:22654880; DOI:10.3389/fimmu.2012.00122; PMCID:PMC3360193) · `EV00004` · verified: yes
+
+> "to positively select intact cells (Ir191+Ir193+), to positively select live cells (Rh103−Ir191+Ir193+), and to identify CD19+ and/or CD20+ B cells"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00007` · verified: no
+
+## CD21
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000033 (Double Negative B cell 1), SOULCAP:SC000034 (Double Negative B cell 2), SOULCAP:SC000035 (Double Negative B cell 3), SOULCAP:SC000036 (Double Negative B cell 4)
+
+> "DN1: CD11c− CD21+" / "DN2: CD11c+ CD21−" / "DN3: CD11c− CD21−"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00039` · verified: not_checked
+
+> "CD19+IgD−CD27−CD21+ CD11c− T-bet− CXCR5+" [DN1 phenotype, Table 1] and "CD19+IgD−CD27−CD21− CD11c+ T-bet+CXCR5−" [DN2 phenotype] and "CD19+IgD−CD27−CD21− CD11c−"
+
+— Sachinidis & Garyfallos 2021 (PMID:34964023; DOI:10.31138/mjr.32.3.192; PMCID:PMC8693305) · `EV00040` · verified: no
+
+> "The gradual loss of CD10, CD5, and IgM and the upregulation of CD22, CD44, CD21, and CD23 as cells progress from immature to transitional (TI to T2 to T3) to mature naïve cells"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00041` · verified: no
+
+## CD24
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000028 (Transitonal B cell 1 and 2), SOULCAP:SC000030 (Transitional B cell 3), SOULCAP:SC000031 (Naive B cell), SOULCAP:SC000032 (Double Negative B cells), SOULCAP:SC000033 (Double Negative B cell 1), SOULCAP:SC000034 (Double Negative B cell 2), SOULCAP:SC000035 (Double Negative B cell 3), SOULCAP:SC000036 (Double Negative B cell 4)
+
+> "Co-expression of high levels of CD24 and CD38 have also frequently been used to identify them, and it is important that CD27 be included if this is the case"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00018` · verified: yes
+
+> "**Tr**: CD19+ CD27− CD38int CD24+" [transitional B cell gating entry, Table 1] and "**N**: CD19+ CD27− CD38− CD24− IgD+" [naive B cell gating entry] and "**DN**: CD19+ CD27− CD38− CD24− IgD−"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00019` · verified: not_checked
+
+## CD27
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000024 (Antibody Secreting Cell), SOULCAP:SC000025 (Plasmablast), SOULCAP:SC000026 (Plasma Cell), SOULCAP:SC000028 (Transitonal B cell 1 and 2), SOULCAP:SC000029 (Mature B cell), SOULCAP:SC000030 (Transitional B cell 3), SOULCAP:SC000031 (Naive B cell), SOULCAP:SC000032 (Double Negative B cells), SOULCAP:SC000033 (Double Negative B cell 1), SOULCAP:SC000034 (Double Negative B cell 2), SOULCAP:SC000035 (Double Negative B cell 3), SOULCAP:SC000036 (Double Negative B cell 4), SOULCAP:SC000037 (Memory B cell), SOULCAP:SC000038 (IgD only Memory B cell), SOULCAP:SC000039 (Unswitched Memory B cell), SOULCAP:SC000040 (IgM-only Memory B cell), SOULCAP:SC000041 (Switched Memory B cell), SOULCAP:SC000042 (IgA-Class Switched B cell), SOULCAP:SC000043 (IgG-Class Switched B cell), SOULCAP:SC000044 (IgE-Class Switched B cell)
+
+> "transitional (IgD+CD27−CD10+), and naïve (IgD+CD27−CD10−)"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00008` · verified: yes
+
+> "**M**: CD19+ CD27+ CD38−/lo" [memory B cell gating entry] and "**N**: CD19+ CD27− CD38− CD24− IgD+"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00009` · verified: not_checked
+
+> "Double negative (DN) B cells, also known as atypical memory B cells, constitute a B cell population that lacks expression of immunoglobulin D and CD27 memory marker."
+
+— Sachinidis & Garyfallos 2021 (PMID:34964023; DOI:10.31138/mjr.32.3.192; PMCID:PMC8693305) · `EV00010` · verified: yes
+
+## CD3
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000023 (B cell), SOULCAP:SC000024 (Antibody Secreting Cell), SOULCAP:SC000025 (Plasmablast), SOULCAP:SC000026 (Plasma Cell), SOULCAP:SC000028 (Transitonal B cell 1 and 2), SOULCAP:SC000029 (Mature B cell), SOULCAP:SC000030 (Transitional B cell 3), SOULCAP:SC000031 (Naive B cell), SOULCAP:SC000032 (Double Negative B cells), SOULCAP:SC000033 (Double Negative B cell 1), SOULCAP:SC000034 (Double Negative B cell 2), SOULCAP:SC000035 (Double Negative B cell 3), SOULCAP:SC000036 (Double Negative B cell 4), SOULCAP:SC000037 (Memory B cell), SOULCAP:SC000038 (IgD only Memory B cell), SOULCAP:SC000039 (Unswitched Memory B cell), SOULCAP:SC000040 (IgM-only Memory B cell), SOULCAP:SC000041 (Switched Memory B cell), SOULCAP:SC000042 (IgA-Class Switched B cell), SOULCAP:SC000043 (IgG-Class Switched B cell), SOULCAP:SC000044 (IgE-Class Switched B cell)
+
+> "B cells were enriched using negative selection of CD2, CD3, CD14, CD16, CD36, CD42b, CD56, CD66b and CD123."
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00052` · verified: not_checked
+
+> "Cells were gated as CD3−CD14−CD16−CD19+CD38+CD27+ single live cells"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00055` · verified: not_checked
+
+> "a population of enriched B cells (CD3−CD14−) was collected"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00057` · verified: yes
+
+## CD38
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000028 (Transitonal B cell 1 and 2), SOULCAP:SC000029 (Mature B cell), SOULCAP:SC000030 (Transitional B cell 3), SOULCAP:SC000031 (Naive B cell), SOULCAP:SC000032 (Double Negative B cells), SOULCAP:SC000033 (Double Negative B cell 1), SOULCAP:SC000034 (Double Negative B cell 2), SOULCAP:SC000035 (Double Negative B cell 3), SOULCAP:SC000036 (Double Negative B cell 4), SOULCAP:SC000037 (Memory B cell), SOULCAP:SC000038 (IgD only Memory B cell), SOULCAP:SC000039 (Unswitched Memory B cell), SOULCAP:SC000040 (IgM-only Memory B cell), SOULCAP:SC000041 (Switched Memory B cell), SOULCAP:SC000042 (IgA-Class Switched B cell), SOULCAP:SC000043 (IgG-Class Switched B cell), SOULCAP:SC000044 (IgE-Class Switched B cell)
+
+> "T1 (CD38+++CD24hiCD10++IgDlo/−), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00011` · verified: yes
+
+> "Co-expression of high levels of CD24 and CD38 have also frequently been used to identify them, and it is important that CD27 be included if this is the case"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00012` · verified: yes
+
+> "**ASC**: CD19+ CD27+ CD38hi" and "**M**: CD19+ CD27+ CD38−/lo" and "**Tr**: CD19+ CD27− CD38int CD24+"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00013` · verified: not_checked
+
+## CD56
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000023 (B cell), SOULCAP:SC000024 (Antibody Secreting Cell), SOULCAP:SC000025 (Plasmablast), SOULCAP:SC000026 (Plasma Cell), SOULCAP:SC000028 (Transitonal B cell 1 and 2), SOULCAP:SC000029 (Mature B cell), SOULCAP:SC000030 (Transitional B cell 3), SOULCAP:SC000031 (Naive B cell), SOULCAP:SC000032 (Double Negative B cells), SOULCAP:SC000033 (Double Negative B cell 1), SOULCAP:SC000034 (Double Negative B cell 2), SOULCAP:SC000035 (Double Negative B cell 3), SOULCAP:SC000036 (Double Negative B cell 4), SOULCAP:SC000037 (Memory B cell), SOULCAP:SC000038 (IgD only Memory B cell), SOULCAP:SC000039 (Unswitched Memory B cell), SOULCAP:SC000040 (IgM-only Memory B cell), SOULCAP:SC000041 (Switched Memory B cell), SOULCAP:SC000042 (IgA-Class Switched B cell), SOULCAP:SC000043 (IgG-Class Switched B cell), SOULCAP:SC000044 (IgE-Class Switched B cell)
+
+> "B cells were enriched using negative selection of CD2, CD3, CD14, CD16, CD36, CD42b, CD56, CD66b and CD123."
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00053` · verified: not_checked
+
+## IgA
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000042 (IgA-Class Switched B cell), SOULCAP:SC000043 (IgG-Class Switched B cell), SOULCAP:SC000044 (IgE-Class Switched B cell)
+
+> "naïve B cells express immunoglobulin (Ig)D and IgM and undergo isotype switching to produce IgM, IgA, IgG, or IgE exclusively"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00027` · verified: yes
+
+> "CD73+ MBCs are also proportionally more isotype-switched than CD73– MBCs, allowing them to produce IgG and IgA antibodies to facilitate a more diverse set of effector functions"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00030` · verified: no
+
+> "cluster 4 was IgG1 (IGHG1) dominant with minimal contributions from other isotypes, cluster 7 was more balanced but with a slight bias towards IgA (IGHA1/IGHA2) overall"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00031` · verified: yes
+
+> "Consistent with the B cell antigen receptor-sequencing data, SARS-CoV-2-specific responsiveness was broad, with participation of IgM, IgA and IgG antibodies."
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00035` · verified: not_checked
+
+## IgD
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000030 (Transitional B cell 3), SOULCAP:SC000031 (Naive B cell), SOULCAP:SC000032 (Double Negative B cells), SOULCAP:SC000033 (Double Negative B cell 1), SOULCAP:SC000034 (Double Negative B cell 2), SOULCAP:SC000035 (Double Negative B cell 3), SOULCAP:SC000036 (Double Negative B cell 4), SOULCAP:SC000038 (IgD only Memory B cell), SOULCAP:SC000039 (Unswitched Memory B cell), SOULCAP:SC000040 (IgM-only Memory B cell), SOULCAP:SC000041 (Switched Memory B cell), SOULCAP:SC000042 (IgA-Class Switched B cell), SOULCAP:SC000043 (IgG-Class Switched B cell), SOULCAP:SC000044 (IgE-Class Switched B cell)
+
+> "naïve B cells express immunoglobulin (Ig)D and IgM and undergo isotype switching to produce IgM, IgA, IgG, or IgE exclusively"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00020` · verified: yes
+
+> "**N**: CD19+ CD27− CD38− CD24− IgD+"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00021` · verified: not_checked
+
+> "**usM**: IgM+ IgD+" [unswitched memory] / "**mM**: IgM+ IgD−" [IgM-only memory] / "**sM**: IgM− IgD−"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00022` · verified: not_checked
+
+> "Double negative (DN) B cells, also known as atypical memory B cells, constitute a B cell population that lacks expression of immunoglobulin D and CD27 memory marker."
+
+— Sachinidis & Garyfallos 2021 (PMID:34964023; DOI:10.31138/mjr.32.3.192; PMCID:PMC8693305) · `EV00023` · verified: yes
+
+> "T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00024` · verified: yes
+
+## IgE
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000033 (Double Negative B cell 1), SOULCAP:SC000036 (Double Negative B cell 4), SOULCAP:SC000042 (IgA-Class Switched B cell), SOULCAP:SC000043 (IgG-Class Switched B cell), SOULCAP:SC000044 (IgE-Class Switched B cell)
+
+> "naïve B cells express immunoglobulin (Ig)D and IgM and undergo isotype switching to produce IgM, IgA, IgG, or IgE exclusively"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00028` · verified: yes
+
+## IgG
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000042 (IgA-Class Switched B cell), SOULCAP:SC000043 (IgG-Class Switched B cell), SOULCAP:SC000044 (IgE-Class Switched B cell)
+
+> "naïve B cells express immunoglobulin (Ig)D and IgM and undergo isotype switching to produce IgM, IgA, IgG, or IgE exclusively"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00026` · verified: yes
+
+> "CD73+ MBCs are also proportionally more isotype-switched than CD73– MBCs, allowing them to produce IgG and IgA antibodies to facilitate a more diverse set of effector functions"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00029` · verified: no
+
+> "Consistent with the B cell antigen receptor-sequencing data, SARS-CoV-2-specific responsiveness was broad, with participation of IgM, IgA and IgG antibodies."
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00034` · verified: not_checked
+
+## IgM
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000038 (IgD only Memory B cell), SOULCAP:SC000039 (Unswitched Memory B cell), SOULCAP:SC000040 (IgM-only Memory B cell), SOULCAP:SC000041 (Switched Memory B cell), SOULCAP:SC000042 (IgA-Class Switched B cell), SOULCAP:SC000043 (IgG-Class Switched B cell), SOULCAP:SC000044 (IgE-Class Switched B cell)
+
+> "naïve B cells express immunoglobulin (Ig)D and IgM and undergo isotype switching to produce IgM, IgA, IgG, or IgE exclusively"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00025` · verified: yes
+
+> "**usM**: IgM+ IgD+" [unswitched memory] / "**mM**: IgM+ IgD−" [IgM-only memory] / "**sM**: IgM− IgD−"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00032` · verified: not_checked
+
+> "Consistent with the B cell antigen receptor-sequencing data, SARS-CoV-2-specific responsiveness was broad, with participation of IgM, IgA and IgG antibodies."
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00033` · verified: not_checked
diff --git a/literature/by_cell_type/dendritic-cell.md b/literature/by_cell_type/dendritic-cell.md
new file mode 100644
index 0000000..32ce3f6
--- /dev/null
+++ b/literature/by_cell_type/dendritic-cell.md
@@ -0,0 +1,172 @@
+# dendritic cell
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## CD11c
+
+**Candidate SOULCAP cell types (unreviewed):** none found
+
+> "Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123−"
+
+— Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088; PMCID:PMC6532592) · `EV00058` · verified: yes
+
+> "pDCs are CD11c− CD123+ cells best characterized for their type I interferon"
+
+— Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088; PMCID:PMC6532592) · `EV00059` · verified: no
+
+> "CD11c, a 'classical' cDC marker, can be downregulated on DCs"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00060` · verified: no
+
+> "human pDCs (defined as CD45+CD11cloHLADRhi cells) were IRF8hiIRF4int across tissues"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00061` · verified: no
+
+> "For DCs, we sampled LIN−HLA-DR+CD14− cells across the CD11C+ fraction (to enrich for CD141+ and CD1C+ cDCs) and the CD11C− fraction"
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00062` · verified: not_checked
+
+## CD123
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000011 (Conventional Dendritic Cell), SOULCAP:SC000012 (Conventional Dendritic Cell 1), SOULCAP:SC000013 (Conventional Dendritic Cell 2), SOULCAP:SC000014 (Peripheral Dendritic Cell)
+
+> "Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123−"
+
+— Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088; PMCID:PMC6532592) · `EV00075` · verified: yes
+
+> "pDCs are CD11c− CD123+ cells best characterized for their type I interferon"
+
+— Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088; PMCID:PMC6532592) · `EV00076` · verified: no
+
+> "Traditionally defined as CD123+ BDCA-2+ cells, pDCs have also been redefined by single-cell RNA sequencing"
+
+— Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088; PMCID:PMC6532592) · `EV00077` · verified: yes
+
+> "plasmacytoid DCs (pDCs), consisting of CD123+ cells"
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00078` · verified: not_checked
+
+## CD14
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000011 (Conventional Dendritic Cell), SOULCAP:SC000012 (Conventional Dendritic Cell 1), SOULCAP:SC000013 (Conventional Dendritic Cell 2), SOULCAP:SC000014 (Peripheral Dendritic Cell)
+
+> "DCs were defined as live, LIN(CD3, CD19, CD56)−CD14−HLA-DR+ cells."
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00084` · verified: not_checked
+
+> "CD14loCD16lo in human and macaque"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00085` · verified: yes
+
+## CD141
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000012 (Conventional Dendritic Cell 1), SOULCAP:SC000013 (Conventional Dendritic Cell 2)
+
+> "DC1 corresponds to the cross-presenting CD141/BDCA-3+ cDC1, which is best marked by CLEC9A"
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00070` · verified: not_checked
+
+> "cDC1s can be best identified by expression of C-type lectin-like receptor (Clec)9A and cell adhesion molecule 1 (CADM1)...and also express high levels of CD141 and XCR1"
+
+— Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088; PMCID:PMC6532592) · `EV00071` · verified: no
+
+## CD16
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000011 (Conventional Dendritic Cell), SOULCAP:SC000012 (Conventional Dendritic Cell 1), SOULCAP:SC000013 (Conventional Dendritic Cell 2), SOULCAP:SC000014 (Peripheral Dendritic Cell)
+
+> "The DC4 cluster mapped to the CD141−CD1C− population and was accurately delineated by FCGR3A/CD16."
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00086` · verified: not_checked
+
+## CD172a
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000012 (Conventional Dendritic Cell 1), SOULCAP:SC000013 (Conventional Dendritic Cell 2)
+
+> "using CADM1 or XCR1 in combination with CD172a to separate cDC1s from cDC2s"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00072` · verified: yes
+
+> "CD172ahiCD1chi cDC2s"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00073` · verified: yes
+
+## CD1c
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000012 (Conventional Dendritic Cell 1), SOULCAP:SC000013 (Conventional Dendritic Cell 2)
+
+> "DC2 and DC3 correspond to new subdivisions of the CD1C/BDCA-1+ cDC2"
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00066` · verified: not_checked
+
+> "Although both cDC2 subsets can be characterized by CD1c expression, cDC2-A (CD32b+) are distinguished"
+
+— Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088; PMCID:PMC6532592) · `EV00067` · verified: yes
+
+> "CD172ahiCD1chi cDC2s"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00068` · verified: yes
+
+> "In the blood, DC subtypes include CD11C+ conventional DCs (cDCs), consisting of either CD141+ or CD1C+ cells"
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00069` · verified: not_checked
+
+## CD3
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000011 (Conventional Dendritic Cell), SOULCAP:SC000012 (Conventional Dendritic Cell 1), SOULCAP:SC000013 (Conventional Dendritic Cell 2), SOULCAP:SC000014 (Peripheral Dendritic Cell)
+
+> "DCs were defined as live, LIN(CD3, CD19, CD56)−CD14−HLA-DR+ cells."
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00087` · verified: not_checked
+
+## CD303
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000011 (Conventional Dendritic Cell), SOULCAP:SC000012 (Conventional Dendritic Cell 1), SOULCAP:SC000013 (Conventional Dendritic Cell 2), SOULCAP:SC000014 (Peripheral Dendritic Cell)
+
+> "pDCs (e.g. IL3RA/CD123, CLEC4C/CD303)"
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00079` · verified: not_checked
+
+> "Traditionally defined as CD123+ BDCA-2+ cells, pDCs"
+
+— Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088; PMCID:PMC6532592) · `EV00080` · verified: yes
+
+> "CD123hiCD303hi (human) pDCs"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00081` · verified: yes
+
+## CD64
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000011 (Conventional Dendritic Cell), SOULCAP:SC000012 (Conventional Dendritic Cell 1), SOULCAP:SC000013 (Conventional Dendritic Cell 2)
+
+> "In human and macaque, CD64 cannot be used, as cDCs also express some CD64."
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00082` · verified: exact_except_trailing_punctuation
+
+> "CD64 is highly expressed on Macs"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00083` · verified: yes
+
+## FceR1a
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000012 (Conventional Dendritic Cell 1), SOULCAP:SC000013 (Conventional Dendritic Cell 2), SOULCAP:SC000014 (Peripheral Dendritic Cell)
+
+> "CD1C+ DCs (DC2 and DC3) expressed unique markers (e.g. CD1C, CLEC10A, FCER1A, FCGR2B, and CD1D"
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00074` · verified: not_checked
+
+## HLA-DR
+
+**Candidate SOULCAP cell types (unreviewed):** none found
+
+> "DCs were defined as live, LIN(CD3, CD19, CD56)−CD14−HLA-DR+ cells."
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00063` · verified: not_checked
+
+> "Numerous studies have shown that human dendritic cells express high levels of major histocompatibility complex (MHC) class II (e.g., HLA-DR)"
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00064` · verified: not_checked
+
+> "human pDCs (defined as CD45+CD11cloHLADRhi cells)"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00065` · verified: no
diff --git a/literature/by_cell_type/gamma-delta-t-cell.md b/literature/by_cell_type/gamma-delta-t-cell.md
new file mode 100644
index 0000000..947e935
--- /dev/null
+++ b/literature/by_cell_type/gamma-delta-t-cell.md
@@ -0,0 +1,100 @@
+# gamma-delta T cell
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## CD161
+
+**Candidate SOULCAP cell types (unreviewed):** none found
+
+> "γδ T cells were divided into two populations based on Vδ1 expression. Each population was subgated based on CD45RA and CD27 expression to differentiate naïve and memory cells and then gated based on CD161, CD4 and CD8 expression."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00101` · verified: no
+
+> "Comparison of CD161 expression between naïve and memory Vδ1+ and Vδ1− populations revealed a significant difference in both TEM cells and TCM cells (p < 0.0001), with Vδ1− cells having the highest surface expression of CD161."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00102` · verified: no
+
+> "Both methods show CD161 as a primary differentiating phenotypic marker for Vδ cell subsets."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00103` · verified: yes
+
+> "Overall, the pattern of marker expression on the eight clusters show that CD161 plays a central role in the differentiation of γδ T cell subtypes."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00104` · verified: no
+
+> "CD161 expression on γδ T cells is associated with enhanced IFN-γ and IL-17 production and enhanced endothelial transmigration."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00105` · verified: no
+
+> "CD161 is a C-type lectin-like membrane receptor expressed at high levels on NK, NKT, Th17, Mucosa Associated Invariant T cells (MAITs), non-MAIT CD8+, tissue-resident memory cells (TRMs)."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00106` · verified: exact_except_trailing_punctuation
+
+## CD3
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000054 (CD56+ gamma/delta T cell), SOULCAP:SC000055 (CD56+ CD4+ gamma/delta T cell), SOULCAP:SC000056 (CD56+ CD8+ gamma/delta T cell), SOULCAP:SC000057 (CD56+ CD4+/CD8+ gamma/delta T cell), SOULCAP:SC000058 (CD56+ CD8-/CD8- gamma/delta T cell), SOULCAP:SC000061 (gamma/delta T cell), SOULCAP:SC000070 (CD4+ gamma/delta T cell), SOULCAP:SC000071 (CD8+ gamma/delta T cell), SOULCAP:SC000072 (CD4+/CD8+ gamma/delta T cell), SOULCAP:SC000073 (CD4-/CD8- gamma/delta T cell), SOULCAP:SC000122 (Vg9 Vd2), SOULCAP:SC000123 (Vd2), SOULCAP:SC000124 (Vd3), SOULCAP:SC000125 (Vg9 Vd1), SOULCAP:SC000126 (Vd1), SOULCAP:SC000127 (Vg9 )
+
+> "Cytobank 5.0 was used (following quality control and data scaling) to gate live/CD3+/γδ TCR+ cells."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00088` · verified: no
+
+## TCR Vγ9
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000122 (Vg9 Vd2)
+
+> "Most predominantly, it pairs with the Vγ9 chain forming a functional heterodimer, Therefore, this cell is also known as Vγ9Vδ2 T cell"
+
+— Wang et al. 2026 (PMID:42344895; DOI:10.3389/fimmu.2026.1827307; PMCID:PMC13286967) · `EV00094` · verified: yes
+
+> "Vδ2+ γδ T cells, the dominant circulating subset in humans, are activated by non-peptidic phosphorylated intermediates of the mevalonate pathway."
+
+— Laub et al. 2025 (PMID:40746558; DOI:10.3389/fimmu.2025.1618393; PMCID:PMC12310680) · `EV00095` · verified: no
+
+## TCR Vδ1
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000123 (Vd2)
+
+> "Vδ1+ T cells are mainly found in the mucosal tissues (intestinal tissues) and epithelial tissues (such as skin)"
+
+— Wang et al. 2026 (PMID:42344895; DOI:10.3389/fimmu.2026.1827307; PMCID:PMC13286967) · `EV00096` · verified: yes
+
+> "Vδ1+ T cells are the primary tissue-resident γδ T cell subset"
+
+— Wang et al. 2026 (PMID:42344895; DOI:10.3389/fimmu.2026.1827307; PMCID:PMC13286967) · `EV00097` · verified: no
+
+> "The Vδ1 chain can pair with multiple γ chains (e.g., Vγ2, Vγ3, Vγ4)"
+
+— Wang et al. 2026 (PMID:42344895; DOI:10.3389/fimmu.2026.1827307; PMCID:PMC13286967) · `EV00098` · verified: yes
+
+> "Vδ1+ cells maintain a predominant population of TEM/TEMRA γδ T cells"
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00099` · verified: no
+
+> "Vδ1+ and Vδ1− (as a percentage of γδ T cells) of 30.6% (± SD 27%) and 69.2% (± SD 27%) respectively."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00100` · verified: no
+
+## TCR Vδ2
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000122 (Vg9 Vd2)
+
+> "Vδ2 cells comprise 50–90% of γδ T cells in the circulation and are both effectors and antigen-presenting cells (APCs)."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00089` · verified: yes
+
+> "The most abundant T cell subtype in human peripheral blood is the Vδ2+ T cell."
+
+— Wang et al. 2026 (PMID:42344895; DOI:10.3389/fimmu.2026.1827307; PMCID:PMC13286967) · `EV00090` · verified: yes
+
+> "It accounts for approximately 50% to 95% of total γδ T cells"
+
+— Wang et al. 2026 (PMID:42344895; DOI:10.3389/fimmu.2026.1827307; PMCID:PMC13286967) · `EV00091` · verified: yes
+
+> "Vδ2+ T cells, represented by Vγ9Vδ2 T cells, the dominant circulating subset in humans"
+
+— Laub et al. 2025 (PMID:40746558; DOI:10.3389/fimmu.2025.1618393; PMCID:PMC12310680) · `EV00092` · verified: yes
+
+> "Vδ1− cells are likely to be the predominant Vδ2+ in circulation"
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00093` · verified: yes
diff --git a/literature/by_cell_type/inkt-cell.md b/literature/by_cell_type/inkt-cell.md
new file mode 100644
index 0000000..ed93577
--- /dev/null
+++ b/literature/by_cell_type/inkt-cell.md
@@ -0,0 +1,112 @@
+# iNKT cell
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## CD14
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000059 (Invariant Natural Killer T cell)
+
+> "gating should include time, singlets, and scatter profile, followed by dead cell exclusion, CD14/CD19 dumping, and CD3 positivity"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00173` · verified: not_checked
+
+## CD1d-α-GalCer Tetramer
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000059 (Invariant Natural Killer T cell)
+
+> "the vast majority of α-GalCer loaded CD1d pentamer+ cells fall within the Vα24+Vβ11+ gate (median=99%), and the Vα24+Vβ11+ gate encompasses the majority of CD1d pentamer+ cells (median=99%)"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00169` · verified: not_checked
+
+> "CD1d and MR1 tetramer can easily be substituted into this panel in place of these MAIT and iNKT TCRs"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00170` · verified: not_checked
+
+> "Human T2NKT cells are conventionally detected with sulfatide-loaded CD1d tetramers; however, this method is noisy and fails to identify T2NKT cells that recognize other lipids."
+
+— Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473; PMCID:PMC9202826) · `EV00171` · verified: no
+
+## CD3
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000059 (Invariant Natural Killer T cell)
+
+> "both identified as CD3+ and defined by their TCR specificities"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00154` · verified: not_checked
+
+> "we defined iNKT cell subsets by the co-expression of TCR Vα24 and Vβ11 among CD3+ cells, and further through their expression of CD4 and CD161"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00155` · verified: not_checked
+
+> "gating should include time, singlets, and scatter profile, followed by dead cell exclusion, CD14/CD19 dumping, and CD3 positivity"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00156` · verified: not_checked
+
+> "the four CD3+ T cell subsets can be gated on, as CD8 and CD4 bulk T cells, MAIT cells, (CD161bright Vα7.2 TCR+), and iNKT cells (Vα24 TCR+ Vβ11 TCR+)"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00157` · verified: not_checked
+
+## CD56
+
+**Candidate SOULCAP cell types (unreviewed):** none found
+
+> "T2NKT cells were identified as CD3+ CD56+ CD161+ TCR-γδ- TCRVα7.2- and TCRVα24- cells."
+
+— Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473; PMCID:PMC9202826) · `EV00172` · verified: no
+
+## TCR Vβ11
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000059 (Invariant Natural Killer T cell)
+
+> "iNKT cells possess an invariant TCR Vα24-Jα18α chain paired with TCR Vβ11, which mainly responds to α-galactosylceramide glycopeptide (αGalCer)."
+
+— Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473; PMCID:PMC9202826) · `EV00164` · verified: yes
+
+> "iNKT cells, can be identified in humans through expression of their invariant alpha (Vα24) and beta (Vβ11) TCR segments"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00165` · verified: not_checked
+
+> "we defined iNKT cell subsets by the co-expression of TCR Vα24 and Vβ11 among CD3+ cells, and further through their expression of CD4 and CD161"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00166` · verified: not_checked
+
+> "Vβ11 TCR PE C21 iNKT cell lineage"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00167` · verified: not_checked
+
+> "the Vα24+Vβ11+ gate encompasses the majority of CD1d pentamer+ cells (median=99%)"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00168` · verified: not_checked
+
+## TCRVα24-Jα18
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000059 (Invariant Natural Killer T cell)
+
+> "iNKT cells possess an invariant TCR Vα24-Jα18α chain paired with TCR Vβ11, which mainly responds to α-galactosylceramide glycopeptide (αGalCer)."
+
+— Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473; PMCID:PMC9202826) · `EV00161` · verified: yes
+
+> "iNKT cells, can be identified in humans through expression of their invariant alpha (Vα24) and beta (Vβ11) TCR segments"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00162` · verified: not_checked
+
+> "Vα24 TCR FITC C15 iNKT cell lineage"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00163` · verified: not_checked
+
+## TCRαβ
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000059 (Invariant Natural Killer T cell)
+
+> "Expression of T Cell Receptor (TCR)-αβ enables NKT cells to recognize antigenic lipids presented by CD1d"
+
+— Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473; PMCID:PMC9202826) · `EV00158` · verified: yes
+
+> "T2NKT cells were identified as CD3+ CD56+ CD161+ TCR-γδ- TCRVα7.2- and TCRVα24- cells."
+
+— Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473; PMCID:PMC9202826) · `EV00159` · verified: no
+
+> "we identified a CD3+ CD56+ CD161+ TCR-Vα24- TCR-γδ- TCR-Vα7.2- living T2NKT cell population."
+
+— Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473; PMCID:PMC9202826) · `EV00160` · verified: no
diff --git a/literature/by_cell_type/innate-lymphoid-cell.md b/literature/by_cell_type/innate-lymphoid-cell.md
new file mode 100644
index 0000000..90f6420
--- /dev/null
+++ b/literature/by_cell_type/innate-lymphoid-cell.md
@@ -0,0 +1,180 @@
+# innate lymphoid cell
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## CD117
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000006 (Innate Lymphoid Cell Progenitor), SOULCAP:SC000008 (Innate Lymphoid Cell 1), SOULCAP:SC000009 (Innate Lymphoid Cell 2), SOULCAP:SC000010 (Innate Lymphoid Cell 3)
+
+> "could be subdivided into CD117−NKp44− ILC1s and CD117‐expressing NKp44− ILC3s and NKp44+ ILC3s."
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00138` · verified: yes
+
+> "ILC1s as CD117− CRTH2−" … "ILC3s as CRTH2− CD117+"
+
+— Bonne-Année, Bush & Nutman 2019 (PMID:31586075; DOI:10.1038/s41598-019-50308-8; PMCID:PMC6778123) · `EV00139` · verified: yes
+
+> "ILC2s as CRTH2+ CD117−/+"
+
+— Bonne-Année, Bush & Nutman 2019 (PMID:31586075; DOI:10.1038/s41598-019-50308-8; PMCID:PMC6778123) · `EV00140` · verified: yes
+
+> "ILC3 subpopulations were evaluated in whole blood using the NKp44 (44.189) antibody to defined ILC3as as CRTH2− CD117+ NKp44− and ILC3bs as CRTH2− CD117+ NKp44+"
+
+— Bonne-Année, Bush & Nutman 2019 (PMID:31586075; DOI:10.1038/s41598-019-50308-8; PMCID:PMC6778123) · `EV00141` · verified: yes
+
+> "group 3 ILCs (ILC3s) (CD117+CRTH2–)"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00142` · verified: yes
+
+## CD123
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000007 (Innate Lymphoid Cell  ), SOULCAP:SC000008 (Innate Lymphoid Cell 1), SOULCAP:SC000009 (Innate Lymphoid Cell 2), SOULCAP:SC000010 (Innate Lymphoid Cell 3)
+
+> "Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) FcRεR1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors)."
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00149` · verified: yes
+
+## CD127
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000006 (Innate Lymphoid Cell Progenitor), SOULCAP:SC000007 (Innate Lymphoid Cell  ), SOULCAP:SC000008 (Innate Lymphoid Cell 1), SOULCAP:SC000009 (Innate Lymphoid Cell 2), SOULCAP:SC000010 (Innate Lymphoid Cell 3)
+
+> "total ILCs being defined as LIN− CD45+ CD127+"
+
+— Bonne-Année, Bush & Nutman 2019 (PMID:31586075; DOI:10.1038/s41598-019-50308-8; PMCID:PMC6778123) · `EV00121` · verified: yes
+
+> "By first gating on the total ILC population (defined as single cells that were CD45+ Lin-CD127+), these cells could then be divided into their respective ILC subsets"
+
+— Bonne-Année, Bush & Nutman 2019 (PMID:31586075; DOI:10.1038/s41598-019-50308-8; PMCID:PMC6778123) · `EV00122` · verified: yes
+
+> "CD45+Lin–CD3–CD161+CD127+ cells and are subdivided into 3 subsets, namely, group 1 ILCs (ILC1s) (CD117–CRTH2–), group 2 ILCs (ILC2s) (CRTH2+), and group 3 ILCs (ILC3s) (CD117+CRTH2–)."
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00123` · verified: yes
+
+> "characterized by the expression of the pan‐ILC markers CD127, CD161, and CD200R1"
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00124` · verified: yes
+
+> "The population positive for CD7, CD45, CD127 and CD161 and negative for LIN2 was separated and divided into CRTH2 positive/NKp46 negative and CRTH2 negative/NKp46 positive."
+
+— Bento et al 2025 (DOI:10.3389/fimmu.2025.1568875; PMCID:PMC12187685) · `EV00125` · verified: exact_except_trailing_punctuation
+
+## CD14
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000007 (Innate Lymphoid Cell  ), SOULCAP:SC000008 (Innate Lymphoid Cell 1), SOULCAP:SC000009 (Innate Lymphoid Cell 2), SOULCAP:SC000010 (Innate Lymphoid Cell 3)
+
+> "Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) FcRεR1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors)."
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00146` · verified: yes
+
+> "lineage cocktail (TCRα/β, TCRγ/δ, CD19, CD16, CD15, CD14, CD94, CD11c, BDCA-2, FcεRIα, glycophorin A, CD41, CD1a, and CD34)"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00150` · verified: yes
+
+## CD15
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000007 (Innate Lymphoid Cell  ), SOULCAP:SC000008 (Innate Lymphoid Cell 1), SOULCAP:SC000009 (Innate Lymphoid Cell 2), SOULCAP:SC000010 (Innate Lymphoid Cell 3)
+
+> "lineage cocktail (TCRα/β, TCRγ/δ, CD19, CD16, CD15, CD14, CD94, CD11c, BDCA-2, FcεRIα, glycophorin A, CD41, CD1a, and CD34)"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00153` · verified: yes
+
+## CD161
+
+**Candidate SOULCAP cell types (unreviewed):** none found
+
+> "Within the Lin−CD127+ population, conventional ILCs expressed CD161 but not CD94"
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00130` · verified: yes
+
+> "ILC1s were identified through the expression of CD7, CD45, CD127, CD161, absent/low NKp46 and absent LIN2, and CRTH2."
+
+— Bento et al 2025 (DOI:10.3389/fimmu.2025.1568875; PMCID:PMC12187685) · `EV00132` · verified: yes
+
+> "we regularly detected small numbers of CD45+Lin–CD3–CD127+CD161+ cells (ie, bona fide ILCs"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00257` · verified: yes
+
+> "CD161, which is known to be present on NK cells, NKT cells, and T cells," … "is also expressed by human ILCs"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00258` · verified: yes
+
+## CD19
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000007 (Innate Lymphoid Cell  ), SOULCAP:SC000008 (Innate Lymphoid Cell 1), SOULCAP:SC000009 (Innate Lymphoid Cell 2), SOULCAP:SC000010 (Innate Lymphoid Cell 3)
+
+> "Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) FcRεR1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors)."
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00148` · verified: yes
+
+> "lineage cocktail (TCRα/β, TCRγ/δ, CD19, CD16, CD15, CD14, CD94, CD11c, BDCA-2, FcεRIα, glycophorin A, CD41, CD1a, and CD34)"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00152` · verified: yes
+
+## CD294
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000006 (Innate Lymphoid Cell Progenitor), SOULCAP:SC000008 (Innate Lymphoid Cell 1), SOULCAP:SC000009 (Innate Lymphoid Cell 2), SOULCAP:SC000010 (Innate Lymphoid Cell 3)
+
+> "group 2 ILCs (ILC2s) (CRTH2+), and group 3 ILCs (ILC3s) (CD117+CRTH2–)"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00133` · verified: yes
+
+> "ILC2s as CRTH2+ CD117−/+"
+
+— Bonne-Année, Bush & Nutman 2019 (PMID:31586075; DOI:10.1038/s41598-019-50308-8; PMCID:PMC6778123) · `EV00134` · verified: yes
+
+> "ILC2 were identified through the positive expression of CD7, CD45, CD127, CD161, CRTH2, absent/low NKp46 and absent LIN2."
+
+— Bento et al 2025 (DOI:10.3389/fimmu.2025.1568875; PMCID:PMC12187685) · `EV00135` · verified: yes
+
+> "ILC3 were identified through the positive expression of CD7, CD45, CD127, CD161 and NKp46 and absence of CRTH2 and LIN2."
+
+— Bento et al 2025 (DOI:10.3389/fimmu.2025.1568875; PMCID:PMC12187685) · `EV00136` · verified: yes
+
+> "ILC1s as CD117− CRTH2−"
+
+— Bonne-Année, Bush & Nutman 2019 (PMID:31586075; DOI:10.1038/s41598-019-50308-8; PMCID:PMC6778123) · `EV00137` · verified: yes
+
+## CD3
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000006 (Innate Lymphoid Cell Progenitor), SOULCAP:SC000007 (Innate Lymphoid Cell  ), SOULCAP:SC000008 (Innate Lymphoid Cell 1), SOULCAP:SC000009 (Innate Lymphoid Cell 2), SOULCAP:SC000010 (Innate Lymphoid Cell 3)
+
+> "We gated for lymphocytes, excluded doublets and dead cells and selected CD45+CD3− cells"
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00126` · verified: yes
+
+> "CD45+Lin–CD3–CD161+CD127+ cells termed ILCs"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00127` · verified: no
+
+> "Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes)"
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00256` · verified: yes
+
+## CD34
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000007 (Innate Lymphoid Cell  ), SOULCAP:SC000008 (Innate Lymphoid Cell 1), SOULCAP:SC000009 (Innate Lymphoid Cell 2), SOULCAP:SC000010 (Innate Lymphoid Cell 3)
+
+> "Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) FcRεR1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors)."
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00147` · verified: yes
+
+> "lineage cocktail (TCRα/β, TCRγ/δ, CD19, CD16, CD15, CD14, CD94, CD11c, BDCA-2, FcεRIα, glycophorin A, CD41, CD1a, and CD34)"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00151` · verified: yes
+
+## CD56
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000006 (Innate Lymphoid Cell Progenitor), SOULCAP:SC000008 (Innate Lymphoid Cell 1), SOULCAP:SC000009 (Innate Lymphoid Cell 2), SOULCAP:SC000010 (Innate Lymphoid Cell 3)
+
+> "(*) LIN2 is cocktail of the following antibodies: CD3-FITC (SK7), CD14-FITC (SJ25C1), CD19-FITC (L27), CD20-FITC (MφP9), and CD56-FITC (NCAM16.2)."
+
+— Bento et al 2025 (DOI:10.3389/fimmu.2025.1568875; PMCID:PMC12187685) · `EV00143` · verified: yes
+
+> Lineage markers include: "CD3, CD4, CD8, CD14, CD16, CD19, CD56, CD11c, CD11b, FcεR1a"
+
+— Bonne-Année, Bush & Nutman 2019 (PMID:31586075; DOI:10.1038/s41598-019-50308-8; PMCID:PMC6778123) · `EV00144` · verified: no
+
+> "Similar to ILC3s, CD94+ ILCs partly expressed NKp44 and IL‐1R1, and also CD117, CD56, NKG2A"
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00145` · verified: yes
diff --git a/literature/by_cell_type/mait-cell.md b/literature/by_cell_type/mait-cell.md
new file mode 100644
index 0000000..fd24887
--- /dev/null
+++ b/literature/by_cell_type/mait-cell.md
@@ -0,0 +1,76 @@
+# MAIT cell
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## CD161
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000074 (Mucosal-associated Invariant T cell)
+
+> "Human MAIT cells were gated as Zombie−CD14−CD19−CD8α+CD161+Vα7.2+ cells"
+
+— García-Escribano et al. 2026 (PMID:42433370; DOI:10.3389/fimmu.2026.1852383; PMCID:PMC13349841) · `EV00113` · verified: yes
+
+> "Gene transcriptomic analysis has identified MAIT cell-specific markers, including TRAV1-2+ TCR, CD161, PLZF, and IL-18Rα"
+
+— Laub et al. 2025 (PMID:40746558; DOI:10.3389/fimmu.2025.1618393; PMCID:PMC12310680) · `EV00114` · verified: yes
+
+> "Surrogate markers, especially CD161 may lead to the inconsistent identification of MAIT cells, as CD161 can be downregulated in activation."
+
+— Azad et al. 2025 (PMID:41511352; DOI:10.3390/cells15010069; PMCID:PMC12785784) · `EV00115` · verified: exact_except_trailing_punctuation
+
+> "annotated cluster 2 into MAIT according to the high expression of KLRB1, SLC4A10, ZBTB16, RORA, and RORC"
+
+— Cai et al. 2026 (PMID:41804231; DOI:10.1111/cpr.70194; PMCID:PMC13325667) · `EV00116` · verified: yes
+
+## CD3
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000074 (Mucosal-associated Invariant T cell)
+
+> "demonstrated the flow cytometry using CD3, CD4, CD8, TCRβ, MR1 tetramer"
+
+— Cai et al. 2026 (PMID:41804231; DOI:10.1111/cpr.70194; PMCID:PMC13325667) · `EV00107` · verified: yes
+
+## MR1 Tetramer
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000074 (Mucosal-associated Invariant T cell)
+
+> "The most specific method of identifying MAIT cells is by using MR1-5-OP-RU tetramers in flow cytometry."
+
+— Azad et al. 2025 (PMID:41511352; DOI:10.3390/cells15010069; PMCID:PMC12785784) · `EV00117` · verified: exact_except_trailing_punctuation
+
+> "MAIT cells were isolated from PBMCs using a 5-OP-RU-loaded PE-conjugated MR1 tetramer"
+
+— García-Escribano et al. 2026 (PMID:42433370; DOI:10.3389/fimmu.2026.1852383; PMCID:PMC13349841) · `EV00118` · verified: yes
+
+> "performed longitudinal monitoring of circulating MAIT cells using MR1‐tetramer staining"
+
+— Cai et al. 2026 (PMID:41804231; DOI:10.1111/cpr.70194; PMCID:PMC13325667) · `EV00119` · verified: yes
+
+> "The MAIT cell TCR recognizes a series of MR1-binding ligands which includes endogenous bile acids, drug molecules, folate, and riboflavin derivatives"
+
+— Azad et al. 2025 (PMID:41511352; DOI:10.3390/cells15010069; PMCID:PMC12785784) · `EV00120` · verified: yes
+
+## TCR Vα7.2
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000074 (Mucosal-associated Invariant T cell)
+
+> "the semi-invariant conserved MAIT TCR predominantly utilizes TRAV1-2 (Vα7.2 in humans)"
+
+— Laub et al. 2025 (PMID:40746558; DOI:10.3389/fimmu.2025.1618393; PMCID:PMC12310680) · `EV00108` · verified: yes
+
+> "their semi-invariant TCR typically comprises a concrete TCRα chain (encoded by *TRAV1-2/TRAJ33* genes)"
+
+— García-Escribano et al. 2026 (PMID:42433370; DOI:10.3389/fimmu.2026.1852383; PMCID:PMC13349841) · `EV00109` · verified: yes
+
+> "In humans, the majority of MAIT cells are defined as CD8+CD161+Vα7.2+ T cells"
+
+— García-Escribano et al. 2026 (PMID:42433370; DOI:10.3389/fimmu.2026.1852383; PMCID:PMC13349841) · `EV00110` · verified: yes
+
+> "Circulating MAIT cells from healthy donors can be identified using surrogate set of markers TCRVα7.2+ CD161+ (and/or CD26+)."
+
+— Azad et al. 2025 (PMID:41511352; DOI:10.3390/cells15010069; PMCID:PMC12785784) · `EV00111` · verified: yes
+
+> "Using TCR Vα7.2 and CD161, we identified MAIT cells in human liver tissues"
+
+— Cai et al. 2026 (PMID:41804231; DOI:10.1111/cpr.70194; PMCID:PMC13325667) · `EV00112` · verified: yes
diff --git a/literature/by_cell_type/nk-cell.md b/literature/by_cell_type/nk-cell.md
new file mode 100644
index 0000000..1ed5286
--- /dev/null
+++ b/literature/by_cell_type/nk-cell.md
@@ -0,0 +1,148 @@
+# NK cell
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## CD11c
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000001 (Natural Killer Cell), SOULCAP:SC000002 (Natural Killer Cell 2), SOULCAP:SC000003 (Cytotoxice Natural Killer Cell), SOULCAP:SC000004 (Natural Killer Cell 1), SOULCAP:SC000005 (Natural Killer Cell 3)
+
+> "CD11C (ITGAX) expression was more pronounced in NK2."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00199` · verified: yes
+
+> "Activation markers also served as differential markers, with CD69 being most prominent in NK1B and NKint, whereas TNFRSF18 (encoding GITR) was more pronounced in NK2. Moreover, classic markers of NK maturation aligned with earlier descriptions: CD56 (NCAM1) was more prevalent in NK2, and CD16 (FCGR3A) expression increased progressively from NK2 to NK1C. In addition, CD11B (ITGAM) levels were higher in NK1B, whereas CD11C (ITGAX) expression was more pronounced in NK2."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00200` · verified: yes
+
+## CD127
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000004 (Natural Killer Cell 1), SOULCAP:SC000005 (Natural Killer Cell 3)
+
+> "In humans, all non-NK ILCs express CD127 (IL-7Rα) and CD161 (NKRP1A) (13–16), and they may be further distinguished according to the expression of other subset-associated surface antigens including CXCR3, CD294 (CRTH2), and CD117 (c-Kit) for ILC1s, ILC2s, and ILC3s, respectively (10, 17). Human NK cells can also express the pan-ILC markers CD127 and CD161 (18–20), but NK cells are typically distinguished by their surface expression of CD16 (FcγRIIIA), CD94/NKG2 heterodimers, killer immunoglobulin-like receptors (KIRs), NKG2D, and NKp80 (21)."
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00184` · verified: yes
+
+> "They demonstrated that a minute CD127− fraction preferentially gave rise to NK cells whereas the predominant CD127+ fraction mostly retained ILC3 features. Thus CD127 has since been touted as a critical marker distinguishing human stage 3 NK cell precursors from ILC3s"
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00185` · verified: yes
+
+## CD14
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000001 (Natural Killer Cell), SOULCAP:SC000002 (Natural Killer Cell 2), SOULCAP:SC000003 (Cytotoxice Natural Killer Cell), SOULCAP:SC000004 (Natural Killer Cell 1), SOULCAP:SC000005 (Natural Killer Cell 3)
+
+> "ILCs are identified as “lineage” (Lin) negative lymphocytes, lacking expression of surface markers more specifically expressed on T cells (CD3, CD5, TCR), B cells (CD19, CD20, BCR), myelomonocytic cells (CD14, CD15, CD36), and dendritic cells (DCs) (CD116, CD123, CD303)."
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00182` · verified: yes
+
+> "there also exists a CD56− NK cell subpopulation, namely CD3−CD4−CD14−CD19−CD16+NKp46+ lymphocytes"
+
+— Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892; PMCID:PMC5522883) · `EV00183` · verified: yes
+
+## CD16
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000002 (Natural Killer Cell 2), SOULCAP:SC000003 (Cytotoxice Natural Killer Cell), SOULCAP:SC000004 (Natural Killer Cell 1), SOULCAP:SC000005 (Natural Killer Cell 3)
+
+> "NK cells are typically distinguished by their surface expression of CD16 (FcγRIIIA), CD94/NKG2 heterodimers, killer immunoglobulin-like receptors (KIRs), NKG2D, and NKp80 (21)."
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00192` · verified: yes
+
+> "The NK1 cluster was marked by high protein expression of CD16, CX3CR1, CD161, β7-integrin and CD38 (Fig. 1c,d)."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00193` · verified: yes
+
+> "Expression of the classic NK cell markers CD57 and CD16 was reduced or absent on NK2 cells compared with NK1 and NK3 cells, indicating that the NK2 population comprised CD56bright and early-stage CD56dim NK cells."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00194` · verified: yes
+
+## CD19
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000001 (Natural Killer Cell), SOULCAP:SC000002 (Natural Killer Cell 2), SOULCAP:SC000003 (Cytotoxice Natural Killer Cell), SOULCAP:SC000004 (Natural Killer Cell 1), SOULCAP:SC000005 (Natural Killer Cell 3)
+
+> "ILCs lack expression of markers specific for other leukocytes, including antigen-specific T and B cell receptors (i.e., CD3/TCR and CD19/BCR)."
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00179` · verified: yes
+
+> "ILCs are identified as “lineage” (Lin) negative lymphocytes, lacking expression of surface markers more specifically expressed on T cells (CD3, CD5, TCR), B cells (CD19, CD20, BCR), myelomonocytic cells (CD14, CD15, CD36), and dendritic cells (DCs) (CD116, CD123, CD303)."
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00180` · verified: yes
+
+> "there also exists a CD56− NK cell subpopulation, namely CD3−CD4−CD14−CD19−CD16+NKp46+ lymphocytes"
+
+— Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892; PMCID:PMC5522883) · `EV00181` · verified: yes
+
+## CD3
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000001 (Natural Killer Cell), SOULCAP:SC000002 (Natural Killer Cell 2), SOULCAP:SC000003 (Cytotoxice Natural Killer Cell), SOULCAP:SC000004 (Natural Killer Cell 1), SOULCAP:SC000005 (Natural Killer Cell 3)
+
+> "Natural killer cells are prototypic members of the innate lymphoid cell (ILC) family and characterized in humans by expression of the phenotypic marker CD56 in the absence of CD3."
+
+— Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892; PMCID:PMC5522883) · `EV00176` · verified: yes
+
+> "ILCs are identified as “lineage” (Lin) negative lymphocytes, lacking expression of surface markers more specifically expressed on T cells (CD3, CD5, TCR), B cells (CD19, CD20, BCR), myelomonocytic cells (CD14, CD15, CD36), and dendritic cells (DCs) (CD116, CD123, CD303)."
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00177` · verified: yes
+
+> "there also exists a CD56− NK cell subpopulation, namely CD3−CD4−CD14−CD19−CD16+NKp46+ lymphocytes"
+
+— Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892; PMCID:PMC5522883) · `EV00178` · verified: yes
+
+## CD56
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000001 (Natural Killer Cell), SOULCAP:SC000003 (Cytotoxice Natural Killer Cell), SOULCAP:SC000004 (Natural Killer Cell 1), SOULCAP:SC000005 (Natural Killer Cell 3)
+
+> "Natural killer cells are prototypic members of the innate lymphoid cell (ILC) family and characterized in humans by expression of the phenotypic marker CD56 in the absence of CD3."
+
+— Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892; PMCID:PMC5522883) · `EV00174` · verified: yes
+
+> "human NK cells are typically divided into two main categories on the basis of the density of CD56, the 140-kDa isoform of the neural cell adhesion molecule (NCAM)2, on the cell surface: CD56bright and CD56dim NK cells."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00175` · verified: yes
+
+> "They are usually further divided into two subsets based on their surface level expression of CD56 (3). Whereas most NK cells in peripheral blood are CD56dim, CD56bright NK cells are more abundant in tissues."
+
+— Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892; PMCID:PMC5522883) · `EV00186` · verified: yes
+
+> "They are usually further divided into two subsets based on their surface level expression of CD56 (3). Whereas most NK cells in peripheral blood are CD56dim, CD56bright NK cells are more abundant in tissues."
+
+— Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892; PMCID:PMC5522883) · `EV00187` · verified: yes
+
+> "Two subsets of human peripheral blood (PB) NK cells can be distinguished according to their relative expression of the pan-NK cell surface marker, CD56 (NCAM-1): “CD56bright” and “CD56dim” (22, 23). CD56bright human NK cells express high levels of CD62L (l-selectin) and CD94 but absent or low levels of CD16 and KIRs; they predominate in secondary lymphoid tissues (SLTs) such as lymph nodes (LNs) and tonsils; they show low baseline perforin expression and cytotoxic activity ex vivo; and they rapidly produce cytokines, including IFN-γ, following stimulation by monocyte-derived cytokines (“monokines”), such as IL-12, IL-15, and IL-18 (22). In contrast, CD56dim NK cells are CD16hi and express more KIRs but less CD94 and CD62L; they predominate in PB; they show high baseline perforin expression and cytotoxicity against MHC class I negative target cells; and they preferentially produce cytokines in response to direct target cell interactions rather than via monokine stimulation (3)."
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00188` · verified: yes
+
+> "Two subsets of human peripheral blood (PB) NK cells can be distinguished according to their relative expression of the pan-NK cell surface marker, CD56 (NCAM-1): “CD56bright” and “CD56dim” (22, 23). CD56bright human NK cells express high levels of CD62L (l-selectin) and CD94 but absent or low levels of CD16 and KIRs; they predominate in secondary lymphoid tissues (SLTs) such as lymph nodes (LNs) and tonsils; they show low baseline perforin expression and cytotoxic activity ex vivo; and they rapidly produce cytokines, including IFN-γ, following stimulation by monocyte-derived cytokines (“monokines”), such as IL-12, IL-15, and IL-18 (22). In contrast, CD56dim NK cells are CD16hi and express more KIRs but less CD94 and CD62L; they predominate in PB; they show high baseline perforin expression and cytotoxicity against MHC class I negative target cells; and they preferentially produce cytokines in response to direct target cell interactions rather than via monokine stimulation (3)."
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00189` · verified: yes
+
+> "The NK2 cluster was defined by high expression of CD56, CD27, CD44, CD54, CD45RB, CD314 (NKG2D) and CD335 (NKp46) and little or no expression of CD16 and CD57 at the protein level (Fig. 1c,d)."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00190` · verified: yes
+
+> "The NK2 cluster was defined by high expression of CD56, CD27, CD44, CD54, CD45RB, CD314 (NKG2D) and CD335 (NKp46) and little or no expression of CD16 and CD57 at the protein level (Fig. 1c,d)."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00191` · verified: yes
+
+## CD57
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000004 (Natural Killer Cell 1), SOULCAP:SC000005 (Natural Killer Cell 3)
+
+> "Further distinctions in the CD56dim population are made on the basis of expression of the CD57 carbohydrate moiety3 on the cell surface and the absence of CD94–NKG2A and CD62L; cells with these features comprise a more mature subset4–7."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00195` · verified: yes
+
+> "this cluster's preferential expression of CD57 and PRDM1 suggests that it also includes mature CD57+CD56dim NK cells that are not produced in response to HCMV."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00196` · verified: no
+
+> "some that were NKp80+CD16+ and coexpressed KIRs and CD57, the latter of which has been associated with terminal maturation and may represent a putative “stage 6” of human NK cell development"
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00197` · verified: yes
+
+## HLA-DR
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000001 (Natural Killer Cell), SOULCAP:SC000002 (Natural Killer Cell 2), SOULCAP:SC000003 (Cytotoxice Natural Killer Cell), SOULCAP:SC000004 (Natural Killer Cell 1), SOULCAP:SC000005 (Natural Killer Cell 3)
+
+> "Notably, NK3B (cluster 1) was distinguished by expression of members of the HLA-D gene family, CD74, CCL5, CD7 and KLRC1, and NK3A exhibited enhanced cytotoxic capabilities (through expression of GZMA, GZMB and PRF1)"
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00198` · verified: yes
diff --git a/literature/by_cell_type/t-cell.md b/literature/by_cell_type/t-cell.md
new file mode 100644
index 0000000..26b0a56
--- /dev/null
+++ b/literature/by_cell_type/t-cell.md
@@ -0,0 +1,272 @@
+# T cell
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## CCR7
+
+**Candidate SOULCAP cell types (unreviewed):** none found
+
+> "CD3+/CD8−/CD4+/CCR7+/CD45RA+"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00244` · verified: yes
+
+> "CD3+/CD8−/CD4+/CCR7+/CD45RA−"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00246` · verified: yes
+
+> "CD3+/CD8−/CD4+/CCR7−/CD45RA+"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00248` · verified: yes
+
+> "CD45RA and CCR7 – CD4+ T cells were divided into four maturation subsets"
+
+— Starshinova A et al. 2025 (PMID:41376646; DOI:10.3389/fimmu.2025.1614461; PMCID:PMC12685880) · `EV00250` · verified: yes
+
+> "Gating was applied to CD3+ CD4+ CD45RO+ CCR7+ cells for Tcm and CD3+ CD4+ CD45RO+ CCR7− cells for Tem."
+
+— Gholizadeh F et al. 2026 (PMID:41928597; DOI:10.1002/eji.70177; PMCID:PMC13047356) · `EV00264` · verified: yes
+
+> "Gating strategy identifying Tcm (Q1: CD4+ CD45RA− CCR7+) and Tem (Q4: CD4+ CD45RA− CCR7−)"
+
+— Gholizadeh F et al. 2026 (PMID:41928597; DOI:10.1002/eji.70177; PMCID:PMC13047356) · `EV00265` · verified: yes
+
+## CD127
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000109 (ConT Treg-like), SOULCAP:SC000110 (ConT Tfh-like), SOULCAP:SC000111 (Th1-like), SOULCAP:SC000112 (Th2-like), SOULCAP:SC000113 (Th9-like), SOULCAP:SC000114 (Th17-like), SOULCAP:SC000121 (CD4 PanT Treg)
+
+> "In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127"
+
+— Kamran M et al. 2025 (PMID:41394832; DOI:10.3389/fimmu.2025.1676937; PMCID:PMC12695756) · `EV00236` · verified: yes
+
+> "the CD4+CD25+CD127low/– population arguably contains a mixture of Treg cells with variable degrees of commitment to the Treg cell lineage."
+
+— Morgana F et al. 2026 (PMID:41645582; DOI:10.1002/eji.70107; PMCID:PMC12877429) · `EV00239` · verified: yes
+
+> "nonnaive CD4 T cells" analyzed using "FOXP3, CD45RA, CD25, CCR4, CCR6, CXCR5, CXCR3, and CD127"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00242` · verified: yes
+
+> "are typically identified by the expression of the transcription factor FoxP3 or the IL-2 receptor α-chain (CD25)" … "the absence or low expression of the IL-7 receptor α-chain (CD127) has been proposed as a distinguishing marker for Tregs"
+
+— Kamran M et al. 2025 (PMID:41394832; DOI:10.3389/fimmu.2025.1676937; PMCID:PMC12695756) · `EV00260` · verified: yes
+
+> "Expression of CD127, the α‐chain of the IL‐7 receptor, is inversely correlated with the expression of hallmark Treg cell regulator FOXP3"
+
+— Morgana F et al. 2026 (PMID:41645582; DOI:10.1002/eji.70107; PMCID:PMC12877429) · `EV00261` · verified: yes
+
+## CD183
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000107 (T helper), SOULCAP:SC000111 (Th1-like), SOULCAP:SC000112 (Th2-like), SOULCAP:SC000113 (Th9-like), SOULCAP:SC000114 (Th17-like), SOULCAP:SC000115 (CD4 PanT helper), SOULCAP:SC000116 (Th1-like), SOULCAP:SC000117 (Th2-like), SOULCAP:SC000118 (Th9-like), SOULCAP:SC000119 (Th17-like)
+
+> "Th1, CXCR3+CCR6–; Th17, CXCR3–CCR6+; Th1–17, CXCR3+CCR6+"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00208` · verified: yes
+
+> "Th1 (CXCR3+CCR6–CCR4–), Th2 (CXCR3–CCR6–CCR4+), Th17 (CXCR3–CCR6+CCR4+)"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00209` · verified: yes
+
+> "Th1 (CXCR3+CCR4−CCR6− CD62LlowCD4+ T cells)"
+
+— Kamigaichi A et al. 2026 (PMID:42047825; DOI:10.1007/s00262-026-04357-4; PMCID:PMC13125411) · `EV00210` · verified: yes
+
+> "define (C) CD154+ Th1 (CXCR3+CCR4−CCR10−CCR6−), (D) CD154+ Th2 (CXCR3−CCR4+CCR10−CCR6−), (E) CD154+ Th17 (CXCR3−CCR4+CCR10−CCR6+)"
+
+— Pospich R et al. 2026 (PMID:42327791; DOI:10.3389/fimmu.2026.1798583; PMCID:PMC13275367) · `EV00211` · verified: yes
+
+> "Th1 (CXCR3+ CCR6−), Th17 (CXCR3− CCR6+), and Th2 (CXCR3− CCR6−"
+
+— Gholizadeh F et al. 2026 (PMID:41928597; DOI:10.1002/eji.70177; PMCID:PMC13047356) · `EV00212` · verified: yes
+
+> "human Th9 cells express CD183 (CXCR3), CD193 (CCR3), and CD196 (CCR6), but not CD194+(CCR4+) or D294 (CRTH2), which are expressed on the surface of Th2 cells"
+
+— Chen T et al. 2020 (DOI:10.3389/fimmu.2020.01026; PMCID:PMC7251969) · `EV00213` · verified: yes
+
+## CD185
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000107 (T helper), SOULCAP:SC000110 (ConT Tfh-like), SOULCAP:SC000111 (Th1-like), SOULCAP:SC000112 (Th2-like), SOULCAP:SC000113 (Th9-like), SOULCAP:SC000114 (Th17-like), SOULCAP:SC000115 (CD4 PanT helper), SOULCAP:SC000116 (Th1-like), SOULCAP:SC000117 (Th2-like), SOULCAP:SC000118 (Th9-like), SOULCAP:SC000119 (Th17-like)
+
+> "CXCR5+ Tfh vs. CXCR5− non‐Tfh"
+
+— Gholizadeh F et al. 2026 (PMID:41928597; DOI:10.1002/eji.70177; PMCID:PMC13047356) · `EV00214` · verified: yes
+
+> "CD3+CD4+CD45RO+PD-1highCXCR5+"
+
+— Liao H et al. 2025 (PMID:41351179; DOI:10.1186/s13075-025-03701-w; PMCID:PMC12797565) · `EV00215` · verified: yes
+
+> "CD3+CD4+CD45RO+PD-1highCXCR5−"
+
+— Liao H et al. 2025 (PMID:41351179; DOI:10.1186/s13075-025-03701-w; PMCID:PMC12797565) · `EV00216` · verified: yes
+
+> "pTfh (CXCR5+PD1+)"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00217` · verified: yes
+
+> "pTfh1 (CXCR3+CCR6–), pTfh2 (CXCR3–CCR6–), pTfh17 (CXCR3–CCR6+)"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00218` · verified: yes
+
+> "we used the following anti-chemokine receptors antibodies – CXCR5, CCR6, CXCR3, and CCR4"
+
+— Starshinova A et al. 2025 (PMID:41376646; DOI:10.3389/fimmu.2025.1614461; PMCID:PMC12685880) · `EV00219` · verified: yes
+
+## CD194
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000107 (T helper), SOULCAP:SC000111 (Th1-like), SOULCAP:SC000112 (Th2-like), SOULCAP:SC000113 (Th9-like), SOULCAP:SC000114 (Th17-like), SOULCAP:SC000115 (CD4 PanT helper), SOULCAP:SC000116 (Th1-like), SOULCAP:SC000117 (Th2-like), SOULCAP:SC000118 (Th9-like), SOULCAP:SC000119 (Th17-like)
+
+> "Th2 (CXCR3–CCR6–CCR4+), Th17 (CXCR3–CCR6+CCR4+)"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00220` · verified: yes
+
+> "cluster 9 was defined as Th2 cells, as they highly expressed CCR4 but did not express biomarkers of Tfh cells (CXCR5, PD-1), Th1 cells (CXCR3), Th17 cells (CCR6), and Treg cells (CD25, Foxp3)"
+
+— Zhu H et al. 2026 (PMID:41826820; DOI:10.1186/s10020-026-01455-y; PMCID:PMC13101149) · `EV00221` · verified: yes
+
+> "Th2 (CXCR3−CCR4+CCR6− CD62LlowCD4+ T cells)"
+
+— Kamigaichi A et al. 2026 (PMID:42047825; DOI:10.1007/s00262-026-04357-4; PMCID:PMC13125411) · `EV00222` · verified: yes
+
+> "Th17 (CXCR3−CCR4+CCR6+ CD62LlowCD4+ T cells)"
+
+— Kamigaichi A et al. 2026 (PMID:42047825; DOI:10.1007/s00262-026-04357-4; PMCID:PMC13125411) · `EV00223` · verified: yes
+
+> "We detected predominantly the marker combination described for Th2 cells (Figure 2D, CXCR3−CCR6−CCR10−CCR4+) and Th17 cells (Figure 2E, CXCR3−CCR6+CCR4+CCR10−) on SplB-specific T cells."
+
+— Pospich R et al. 2026 (PMID:42327791; DOI:10.3389/fimmu.2026.1798583; PMCID:PMC13275367) · `EV00224` · verified: exact_except_trailing_punctuation
+
+> "human Th9 cells express CD183 (CXCR3), CD193 (CCR3), and CD196 (CCR6), but not CD194+(CCR4+) or D294 (CRTH2), which are expressed on the surface of Th2 cells"
+
+— Chen T et al. 2020 (DOI:10.3389/fimmu.2020.01026; PMCID:PMC7251969) · `EV00225` · verified: yes
+
+## CD196
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000107 (T helper), SOULCAP:SC000111 (Th1-like), SOULCAP:SC000112 (Th2-like), SOULCAP:SC000113 (Th9-like), SOULCAP:SC000114 (Th17-like), SOULCAP:SC000115 (CD4 PanT helper), SOULCAP:SC000116 (Th1-like), SOULCAP:SC000117 (Th2-like), SOULCAP:SC000118 (Th9-like), SOULCAP:SC000119 (Th17-like)
+
+> "Th17 (CXCR3–CCR6+CCR4+)"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00226` · verified: yes
+
+> "pTfh17 (CXCR3–CCR6+)"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00227` · verified: yes
+
+> "CD154+ Th17 (CXCR3−CCR4+CCR10−CCR6+)"
+
+— Pospich R et al. 2026 (PMID:42327791; DOI:10.3389/fimmu.2026.1798583; PMCID:PMC13275367) · `EV00228` · verified: yes
+
+> "Th17 (CXCR3−CCR4+CCR6+ CD62LlowCD4+ T cells)"
+
+— Kamigaichi A et al. 2026 (PMID:42047825; DOI:10.1007/s00262-026-04357-4; PMCID:PMC13125411) · `EV00229` · verified: yes
+
+> "human Th9 cells express CD183 (CXCR3), CD193 (CCR3), and CD196 (CCR6)"
+
+— Chen T et al. 2020 (DOI:10.3389/fimmu.2020.01026; PMCID:PMC7251969) · `EV00230` · verified: yes
+
+> "Th1 (CXCR3+ CCR6−), Th17 (CXCR3− CCR6+), and Th2 (CXCR3− CCR6−"
+
+— Gholizadeh F et al. 2026 (PMID:41928597; DOI:10.1002/eji.70177; PMCID:PMC13047356) · `EV00231` · verified: yes
+
+## CD25
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000109 (ConT Treg-like), SOULCAP:SC000110 (ConT Tfh-like), SOULCAP:SC000111 (Th1-like), SOULCAP:SC000112 (Th2-like), SOULCAP:SC000113 (Th9-like), SOULCAP:SC000114 (Th17-like), SOULCAP:SC000121 (CD4 PanT Treg)
+
+> "In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127"
+
+— Kamran M et al. 2025 (PMID:41394832; DOI:10.3389/fimmu.2025.1676937; PMCID:PMC12695756) · `EV00235` · verified: yes
+
+> "the CD4+CD25+CD127low/– population arguably contains a mixture of Treg cells with variable degrees of commitment to the Treg cell lineage."
+
+— Morgana F et al. 2026 (PMID:41645582; DOI:10.1002/eji.70107; PMCID:PMC12877429) · `EV00238` · verified: yes
+
+> "Tregs (FOXP3+CD25+), pTfh (CXCR5+PD1+)"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00240` · verified: yes
+
+> "nonnaive CD4 T cells" analyzed using "FOXP3, CD45RA, CD25, CCR4, CCR6, CXCR5, CXCR3, and CD127"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00241` · verified: yes
+
+> "are typically identified by the expression of the transcription factor FoxP3 or the IL-2 receptor α-chain (CD25)" … "the absence or low expression of the IL-7 receptor α-chain (CD127) has been proposed as a distinguishing marker for Tregs"
+
+— Kamran M et al. 2025 (PMID:41394832; DOI:10.3389/fimmu.2025.1676937; PMCID:PMC12695756) · `EV00259` · verified: yes
+
+## CD27
+
+**Candidate SOULCAP cell types (unreviewed):** none found
+
+> "Zole-expanded Vδ2 γδ T cells displayed a highly homogeneous effector memory (EM) phenotype (CD27-CD45RA-)"
+
+— Kelm M et al. 2026 (PMID:41727470; DOI:10.3389/fimmu.2026.1739493; PMCID:PMC12920462) · `EV00262` · verified: yes
+
+## CD294
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000112 (Th2-like), SOULCAP:SC000117 (Th2-like)
+
+> "human Th9 cells express CD183 (CXCR3), CD193 (CCR3), and CD196 (CCR6), but not CD194+(CCR4+) or D294 (CRTH2), which are expressed on the surface of Th2 cells"
+
+— Chen T et al. 2020 (DOI:10.3389/fimmu.2020.01026; PMCID:PMC7251969) · `EV00232` · verified: yes
+
+## CD3
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000045 (T lymphocyte), SOULCAP:SC000046 (CD56+ T cell), SOULCAP:SC000047 (CD56+ CD4 T cell), SOULCAP:SC000048 (CD56+ CD8 T cell), SOULCAP:SC000049 (CD56+ alpha/beta T cell), SOULCAP:SC000050 (CD56+ CD4+ alpha/beta T cell), SOULCAP:SC000051 (CD56+ CD8+ alpha/beta T cell), SOULCAP:SC000052 (CD56+ CD4+/CD8+ alpha/beta T cell), SOULCAP:SC000053 (CD56+ CD4-/CD8- alpha/beta T cell), SOULCAP:SC000054 (CD56+ gamma/delta T cell), SOULCAP:SC000055 (CD56+ CD4+ gamma/delta T cell), SOULCAP:SC000056 (CD56+ CD8+ gamma/delta T cell), SOULCAP:SC000057 (CD56+ CD4+/CD8+ gamma/delta T cell), SOULCAP:SC000058 (CD56+ CD8-/CD8- gamma/delta T cell), SOULCAP:SC000059 (Invariant Natural Killer T cell), SOULCAP:SC000060 (alpha/beta T cell), SOULCAP:SC000061 (gamma/delta T cell), SOULCAP:SC000062 (alpha/beta and gamma/delta CD4+ T cells), SOULCAP:SC000063 (alpha/beta and gamma/delta CD8+ T cells), SOULCAP:SC000064 (alpha/beta and gamma/delta CD4+ and CD8+ T cells), SOULCAP:SC000065 (alpha/beta and gamma/delta CD4- and CD8- T cells), SOULCAP:SC000066 (CD4+ alpha/beta T cell), SOULCAP:SC000067 (CD8+ alpha/beta T cell), SOULCAP:SC000068 (CD4+ and CD8+ alpha/beta T cell), SOULCAP:SC000069 (CD4- and CD8- alpha/beta T cell), SOULCAP:SC000070 (CD4+ gamma/delta T cell), SOULCAP:SC000071 (CD8+ gamma/delta T cell), SOULCAP:SC000072 (CD4+/CD8+ gamma/delta T cell), SOULCAP:SC000073 (CD4-/CD8- gamma/delta T cell), SOULCAP:SC000074 (Mucosal-associated Invariant T cell), SOULCAP:SC000075 (Conv TCRab), SOULCAP:SC000076 (CD4+ Conv TCRab), SOULCAP:SC000077 (CD8+ Conv TCRab), SOULCAP:SC000078 (CD4+/CD8+ Conv TCRab), SOULCAP:SC000079 (CD4-/CD8- Conv TCRab), SOULCAP:SC000107 (T helper), SOULCAP:SC000109 (ConT Treg-like), SOULCAP:SC000110 (ConT Tfh-like), SOULCAP:SC000111 (Th1-like), SOULCAP:SC000112 (Th2-like), SOULCAP:SC000113 (Th9-like), SOULCAP:SC000114 (Th17-like), SOULCAP:SC000115 (CD4 PanT helper), SOULCAP:SC000116 (Th1-like), SOULCAP:SC000117 (Th2-like), SOULCAP:SC000118 (Th9-like), SOULCAP:SC000119 (Th17-like), SOULCAP:SC000121 (CD4 PanT Treg), SOULCAP:SC000122 (Vg9 Vd2), SOULCAP:SC000123 (Vd2), SOULCAP:SC000124 (Vd3), SOULCAP:SC000125 (Vg9 Vd1), SOULCAP:SC000126 (Vd1), SOULCAP:SC000127 (Vg9 )
+
+> "CD3+/CD8−/CD4+/CCR7+/CD45RA+"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00201` · verified: yes
+
+> "CD3+/CD8+/CD4−/CCR7+/CD45RA+"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00202` · verified: yes
+
+> "Purity of PHA- and Zole- expanded αβ and γδ T-cell cultures and MACS-isolated T-cell populations were assessed by flow cytometry using anti-CD3, CD4, CD8, γδ TCR, and αβ TCR monoclonal antibodies."
+
+— Kelm M et al. 2026 (PMID:41727470; DOI:10.3389/fimmu.2026.1739493; PMCID:PMC12920462) · `EV00203` · verified: yes
+
+## CD4
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000047 (CD56+ CD4 T cell), SOULCAP:SC000048 (CD56+ CD8 T cell), SOULCAP:SC000050 (CD56+ CD4+ alpha/beta T cell), SOULCAP:SC000051 (CD56+ CD8+ alpha/beta T cell), SOULCAP:SC000052 (CD56+ CD4+/CD8+ alpha/beta T cell), SOULCAP:SC000053 (CD56+ CD4-/CD8- alpha/beta T cell), SOULCAP:SC000055 (CD56+ CD4+ gamma/delta T cell), SOULCAP:SC000056 (CD56+ CD8+ gamma/delta T cell), SOULCAP:SC000057 (CD56+ CD4+/CD8+ gamma/delta T cell), SOULCAP:SC000058 (CD56+ CD8-/CD8- gamma/delta T cell), SOULCAP:SC000062 (alpha/beta and gamma/delta CD4+ T cells), SOULCAP:SC000063 (alpha/beta and gamma/delta CD8+ T cells), SOULCAP:SC000064 (alpha/beta and gamma/delta CD4+ and CD8+ T cells), SOULCAP:SC000065 (alpha/beta and gamma/delta CD4- and CD8- T cells), SOULCAP:SC000066 (CD4+ alpha/beta T cell), SOULCAP:SC000067 (CD8+ alpha/beta T cell), SOULCAP:SC000068 (CD4+ and CD8+ alpha/beta T cell), SOULCAP:SC000069 (CD4- and CD8- alpha/beta T cell), SOULCAP:SC000070 (CD4+ gamma/delta T cell), SOULCAP:SC000071 (CD8+ gamma/delta T cell), SOULCAP:SC000072 (CD4+/CD8+ gamma/delta T cell), SOULCAP:SC000073 (CD4-/CD8- gamma/delta T cell), SOULCAP:SC000076 (CD4+ Conv TCRab), SOULCAP:SC000077 (CD8+ Conv TCRab), SOULCAP:SC000078 (CD4+/CD8+ Conv TCRab), SOULCAP:SC000079 (CD4-/CD8- Conv TCRab), SOULCAP:SC000109 (ConT Treg-like), SOULCAP:SC000110 (ConT Tfh-like), SOULCAP:SC000111 (Th1-like), SOULCAP:SC000112 (Th2-like), SOULCAP:SC000113 (Th9-like), SOULCAP:SC000114 (Th17-like), SOULCAP:SC000115 (CD4 PanT helper), SOULCAP:SC000116 (Th1-like), SOULCAP:SC000117 (Th2-like), SOULCAP:SC000118 (Th9-like), SOULCAP:SC000119 (Th17-like), SOULCAP:SC000121 (CD4 PanT Treg)
+
+> "CD3+/CD8−/CD4+/CCR7+/CD45RA−"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00204` · verified: yes
+
+> "CD3+/CD8+/CD4−/CCR7+/CD45RA+"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00206` · verified: yes
+
+## CD45RA
+
+**Candidate SOULCAP cell types (unreviewed):** none found
+
+> "CD3+/CD8−/CD4+/CCR7+/CD45RA+"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00243` · verified: yes
+
+> "CD3+/CD8−/CD4+/CCR7+/CD45RA−"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00245` · verified: yes
+
+> "CD3+/CD8−/CD4+/CCR7−/CD45RA+"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00247` · verified: yes
+
+> "CD45RA and CCR7 – CD4+ T cells were divided into four maturation subsets"
+
+— Starshinova A et al. 2025 (PMID:41376646; DOI:10.3389/fimmu.2025.1614461; PMCID:PMC12685880) · `EV00249` · verified: yes
+
+> "Gating strategy identifying Tcm (Q1: CD4+ CD45RA− CCR7+) and Tem (Q4: CD4+ CD45RA− CCR7−)"
+
+— Gholizadeh F et al. 2026 (PMID:41928597; DOI:10.1002/eji.70177; PMCID:PMC13047356) · `EV00263` · verified: yes
+
+## CD8
+
+**Candidate SOULCAP cell types (unreviewed):** SOULCAP:SC000047 (CD56+ CD4 T cell), SOULCAP:SC000048 (CD56+ CD8 T cell), SOULCAP:SC000050 (CD56+ CD4+ alpha/beta T cell), SOULCAP:SC000051 (CD56+ CD8+ alpha/beta T cell), SOULCAP:SC000052 (CD56+ CD4+/CD8+ alpha/beta T cell), SOULCAP:SC000053 (CD56+ CD4-/CD8- alpha/beta T cell), SOULCAP:SC000055 (CD56+ CD4+ gamma/delta T cell), SOULCAP:SC000056 (CD56+ CD8+ gamma/delta T cell), SOULCAP:SC000057 (CD56+ CD4+/CD8+ gamma/delta T cell), SOULCAP:SC000058 (CD56+ CD8-/CD8- gamma/delta T cell), SOULCAP:SC000062 (alpha/beta and gamma/delta CD4+ T cells), SOULCAP:SC000063 (alpha/beta and gamma/delta CD8+ T cells), SOULCAP:SC000064 (alpha/beta and gamma/delta CD4+ and CD8+ T cells), SOULCAP:SC000065 (alpha/beta and gamma/delta CD4- and CD8- T cells), SOULCAP:SC000066 (CD4+ alpha/beta T cell), SOULCAP:SC000067 (CD8+ alpha/beta T cell), SOULCAP:SC000068 (CD4+ and CD8+ alpha/beta T cell), SOULCAP:SC000069 (CD4- and CD8- alpha/beta T cell), SOULCAP:SC000070 (CD4+ gamma/delta T cell), SOULCAP:SC000071 (CD8+ gamma/delta T cell), SOULCAP:SC000072 (CD4+/CD8+ gamma/delta T cell), SOULCAP:SC000073 (CD4-/CD8- gamma/delta T cell), SOULCAP:SC000076 (CD4+ Conv TCRab), SOULCAP:SC000077 (CD8+ Conv TCRab), SOULCAP:SC000078 (CD4+/CD8+ Conv TCRab), SOULCAP:SC000079 (CD4-/CD8- Conv TCRab), SOULCAP:SC000115 (CD4 PanT helper), SOULCAP:SC000116 (Th1-like), SOULCAP:SC000117 (Th2-like), SOULCAP:SC000118 (Th9-like), SOULCAP:SC000119 (Th17-like), SOULCAP:SC000121 (CD4 PanT Treg)
+
+> "CD3+/CD8−/CD4+/CCR7+/CD45RA−"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00205` · verified: yes
+
+> "CD3+/CD8+/CD4−/CCR7+/CD45RA+"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00207` · verified: yes
diff --git a/literature/by_marker/ccr7.md b/literature/by_marker/ccr7.md
new file mode 100644
index 0000000..e9a0f27
--- /dev/null
+++ b/literature/by_marker/ccr7.md
@@ -0,0 +1,30 @@
+# CCR7
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## T cell
+
+> "CD3+/CD8−/CD4+/CCR7+/CD45RA+"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00244` · verified: yes
+
+> "CD3+/CD8−/CD4+/CCR7+/CD45RA−"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00246` · verified: yes
+
+> "CD3+/CD8−/CD4+/CCR7−/CD45RA+"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00248` · verified: yes
+
+> "CD45RA and CCR7 – CD4+ T cells were divided into four maturation subsets"
+
+— Starshinova A et al. 2025 (PMID:41376646; DOI:10.3389/fimmu.2025.1614461; PMCID:PMC12685880) · `EV00250` · verified: yes
+
+> "Gating was applied to CD3+ CD4+ CD45RO+ CCR7+ cells for Tcm and CD3+ CD4+ CD45RO+ CCR7− cells for Tem."
+
+— Gholizadeh F et al. 2026 (PMID:41928597; DOI:10.1002/eji.70177; PMCID:PMC13047356) · `EV00264` · verified: yes
+
+> "Gating strategy identifying Tcm (Q1: CD4+ CD45RA− CCR7+) and Tem (Q4: CD4+ CD45RA− CCR7−)"
+
+— Gholizadeh F et al. 2026 (PMID:41928597; DOI:10.1002/eji.70177; PMCID:PMC13047356) · `EV00265` · verified: yes
diff --git a/literature/by_marker/cd10.md b/literature/by_marker/cd10.md
new file mode 100644
index 0000000..6ca390b
--- /dev/null
+++ b/literature/by_marker/cd10.md
@@ -0,0 +1,22 @@
+# CD10
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "These cells express IgD and CD10 alongside the IgM BCR so can be identified as IgD+ CD27−CD10hi/+"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00014` · verified: yes
+
+> "T1 (CD38+++CD24hiCD10++IgDlo/−), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00015` · verified: yes
+
+> "transitional (IgD+CD27−CD10+), and naïve (IgD+CD27−CD10−)"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00016` · verified: yes
+
+> "CD21lo Tr cells expressed higher levels of markers of the early transitional compartment (IgM, CD24, CD10), but less CD21 and CXCR5"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00017` · verified: not_checked
diff --git a/literature/by_marker/cd117.md b/literature/by_marker/cd117.md
new file mode 100644
index 0000000..c481eea
--- /dev/null
+++ b/literature/by_marker/cd117.md
@@ -0,0 +1,26 @@
+# CD117
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## innate lymphoid cell
+
+> "could be subdivided into CD117−NKp44− ILC1s and CD117‐expressing NKp44− ILC3s and NKp44+ ILC3s."
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00138` · verified: yes
+
+> "ILC1s as CD117− CRTH2−" … "ILC3s as CRTH2− CD117+"
+
+— Bonne-Année, Bush & Nutman 2019 (PMID:31586075; DOI:10.1038/s41598-019-50308-8; PMCID:PMC6778123) · `EV00139` · verified: yes
+
+> "ILC2s as CRTH2+ CD117−/+"
+
+— Bonne-Année, Bush & Nutman 2019 (PMID:31586075; DOI:10.1038/s41598-019-50308-8; PMCID:PMC6778123) · `EV00140` · verified: yes
+
+> "ILC3 subpopulations were evaluated in whole blood using the NKp44 (44.189) antibody to defined ILC3as as CRTH2− CD117+ NKp44− and ILC3bs as CRTH2− CD117+ NKp44+"
+
+— Bonne-Année, Bush & Nutman 2019 (PMID:31586075; DOI:10.1038/s41598-019-50308-8; PMCID:PMC6778123) · `EV00141` · verified: yes
+
+> "group 3 ILCs (ILC3s) (CD117+CRTH2–)"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00142` · verified: yes
diff --git a/literature/by_marker/cd11c.md b/literature/by_marker/cd11c.md
new file mode 100644
index 0000000..b40e106
--- /dev/null
+++ b/literature/by_marker/cd11c.md
@@ -0,0 +1,54 @@
+# CD11c
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "DN2 B cells are a unique double-negative population (IgD−CD27−) that displays extrafollicular characteristics, such as the lack of CXCR5 and CD62L expression."
+
+— Sachinidis & Garyfallos 2021 (PMID:34964023; DOI:10.31138/mjr.32.3.192; PMCID:PMC8693305) · `EV00042` · verified: yes
+
+> "CD19+IgD−CD27−CD21− CD11c+ T-bet+CXCR5−"
+
+— Sachinidis & Garyfallos 2021 (PMID:34964023; DOI:10.31138/mjr.32.3.192; PMCID:PMC8693305) · `EV00043` · verified: no
+
+> "DN1: CD11c− CD21+" / "DN2: CD11c+ CD21−" / "DN3: CD11c− CD21−"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00044` · verified: not_checked
+
+> "six distinct circulating MBC phenotypes were found that were definable based on the combinatorial expression of CD27, CD73, CD95, CD19, CD11c, and the CD45 isoform CD45RB"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00045` · verified: yes
+
+## NK cell
+
+> "CD11C (ITGAX) expression was more pronounced in NK2."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00199` · verified: yes
+
+> "Activation markers also served as differential markers, with CD69 being most prominent in NK1B and NKint, whereas TNFRSF18 (encoding GITR) was more pronounced in NK2. Moreover, classic markers of NK maturation aligned with earlier descriptions: CD56 (NCAM1) was more prevalent in NK2, and CD16 (FCGR3A) expression increased progressively from NK2 to NK1C. In addition, CD11B (ITGAM) levels were higher in NK1B, whereas CD11C (ITGAX) expression was more pronounced in NK2."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00200` · verified: yes
+
+## dendritic cell
+
+> "Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123−"
+
+— Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088; PMCID:PMC6532592) · `EV00058` · verified: yes
+
+> "pDCs are CD11c− CD123+ cells best characterized for their type I interferon"
+
+— Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088; PMCID:PMC6532592) · `EV00059` · verified: no
+
+> "CD11c, a 'classical' cDC marker, can be downregulated on DCs"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00060` · verified: no
+
+> "human pDCs (defined as CD45+CD11cloHLADRhi cells) were IRF8hiIRF4int across tissues"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00061` · verified: no
+
+> "For DCs, we sampled LIN−HLA-DR+CD14− cells across the CD11C+ fraction (to enrich for CD141+ and CD1C+ cDCs) and the CD11C− fraction"
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00062` · verified: not_checked
diff --git a/literature/by_marker/cd123.md b/literature/by_marker/cd123.md
new file mode 100644
index 0000000..dfc33f9
--- /dev/null
+++ b/literature/by_marker/cd123.md
@@ -0,0 +1,28 @@
+# CD123
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## dendritic cell
+
+> "Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123−"
+
+— Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088; PMCID:PMC6532592) · `EV00075` · verified: yes
+
+> "pDCs are CD11c− CD123+ cells best characterized for their type I interferon"
+
+— Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088; PMCID:PMC6532592) · `EV00076` · verified: no
+
+> "Traditionally defined as CD123+ BDCA-2+ cells, pDCs have also been redefined by single-cell RNA sequencing"
+
+— Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088; PMCID:PMC6532592) · `EV00077` · verified: yes
+
+> "plasmacytoid DCs (pDCs), consisting of CD123+ cells"
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00078` · verified: not_checked
+
+## innate lymphoid cell
+
+> "Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) FcRεR1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors)."
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00149` · verified: yes
diff --git a/literature/by_marker/cd127.md b/literature/by_marker/cd127.md
new file mode 100644
index 0000000..1b511b8
--- /dev/null
+++ b/literature/by_marker/cd127.md
@@ -0,0 +1,58 @@
+# CD127
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## NK cell
+
+> "In humans, all non-NK ILCs express CD127 (IL-7Rα) and CD161 (NKRP1A) (13–16), and they may be further distinguished according to the expression of other subset-associated surface antigens including CXCR3, CD294 (CRTH2), and CD117 (c-Kit) for ILC1s, ILC2s, and ILC3s, respectively (10, 17). Human NK cells can also express the pan-ILC markers CD127 and CD161 (18–20), but NK cells are typically distinguished by their surface expression of CD16 (FcγRIIIA), CD94/NKG2 heterodimers, killer immunoglobulin-like receptors (KIRs), NKG2D, and NKp80 (21)."
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00184` · verified: yes
+
+> "They demonstrated that a minute CD127− fraction preferentially gave rise to NK cells whereas the predominant CD127+ fraction mostly retained ILC3 features. Thus CD127 has since been touted as a critical marker distinguishing human stage 3 NK cell precursors from ILC3s"
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00185` · verified: yes
+
+## T cell
+
+> "In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127"
+
+— Kamran M et al. 2025 (PMID:41394832; DOI:10.3389/fimmu.2025.1676937; PMCID:PMC12695756) · `EV00236` · verified: yes
+
+> "the CD4+CD25+CD127low/– population arguably contains a mixture of Treg cells with variable degrees of commitment to the Treg cell lineage."
+
+— Morgana F et al. 2026 (PMID:41645582; DOI:10.1002/eji.70107; PMCID:PMC12877429) · `EV00239` · verified: yes
+
+> "nonnaive CD4 T cells" analyzed using "FOXP3, CD45RA, CD25, CCR4, CCR6, CXCR5, CXCR3, and CD127"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00242` · verified: yes
+
+> "are typically identified by the expression of the transcription factor FoxP3 or the IL-2 receptor α-chain (CD25)" … "the absence or low expression of the IL-7 receptor α-chain (CD127) has been proposed as a distinguishing marker for Tregs"
+
+— Kamran M et al. 2025 (PMID:41394832; DOI:10.3389/fimmu.2025.1676937; PMCID:PMC12695756) · `EV00260` · verified: yes
+
+> "Expression of CD127, the α‐chain of the IL‐7 receptor, is inversely correlated with the expression of hallmark Treg cell regulator FOXP3"
+
+— Morgana F et al. 2026 (PMID:41645582; DOI:10.1002/eji.70107; PMCID:PMC12877429) · `EV00261` · verified: yes
+
+## innate lymphoid cell
+
+> "total ILCs being defined as LIN− CD45+ CD127+"
+
+— Bonne-Année, Bush & Nutman 2019 (PMID:31586075; DOI:10.1038/s41598-019-50308-8; PMCID:PMC6778123) · `EV00121` · verified: yes
+
+> "By first gating on the total ILC population (defined as single cells that were CD45+ Lin-CD127+), these cells could then be divided into their respective ILC subsets"
+
+— Bonne-Année, Bush & Nutman 2019 (PMID:31586075; DOI:10.1038/s41598-019-50308-8; PMCID:PMC6778123) · `EV00122` · verified: yes
+
+> "CD45+Lin–CD3–CD161+CD127+ cells and are subdivided into 3 subsets, namely, group 1 ILCs (ILC1s) (CD117–CRTH2–), group 2 ILCs (ILC2s) (CRTH2+), and group 3 ILCs (ILC3s) (CD117+CRTH2–)."
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00123` · verified: yes
+
+> "characterized by the expression of the pan‐ILC markers CD127, CD161, and CD200R1"
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00124` · verified: yes
+
+> "The population positive for CD7, CD45, CD127 and CD161 and negative for LIN2 was separated and divided into CRTH2 positive/NKp46 negative and CRTH2 negative/NKp46 positive."
+
+— Bento et al 2025 (DOI:10.3389/fimmu.2025.1568875; PMCID:PMC12187685) · `EV00125` · verified: exact_except_trailing_punctuation
diff --git a/literature/by_marker/cd138.md b/literature/by_marker/cd138.md
new file mode 100644
index 0000000..ca52660
--- /dev/null
+++ b/literature/by_marker/cd138.md
@@ -0,0 +1,18 @@
+# CD138
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired"
+
+— Griffin & Rothstein 2012 (PMID:22654880; DOI:10.3389/fimmu.2012.00122; PMCID:PMC3360193) · `EV00036` · verified: yes
+
+> "ASC responses in ICU-C patients were highly enriched in more mature CD138+ cells relative to both OUT-C and HDs."
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00037` · verified: not_checked
+
+> "**CD138neg ASC**: CD138−" and "**CD138pos ASC**: CD138+"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00038` · verified: not_checked
diff --git a/literature/by_marker/cd14.md b/literature/by_marker/cd14.md
new file mode 100644
index 0000000..94e5667
--- /dev/null
+++ b/literature/by_marker/cd14.md
@@ -0,0 +1,54 @@
+# CD14
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "B cells were enriched using negative selection of CD2, CD3, CD14, CD16, CD36, CD42b, CD56, CD66b and CD123."
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00051` · verified: not_checked
+
+> "Cells were gated as CD3−CD14−CD16−CD19+CD38+CD27+ single live cells"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00054` · verified: not_checked
+
+> "a population of enriched B cells (CD3−CD14−) was collected"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00056` · verified: yes
+
+## NK cell
+
+> "ILCs are identified as “lineage” (Lin) negative lymphocytes, lacking expression of surface markers more specifically expressed on T cells (CD3, CD5, TCR), B cells (CD19, CD20, BCR), myelomonocytic cells (CD14, CD15, CD36), and dendritic cells (DCs) (CD116, CD123, CD303)."
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00182` · verified: yes
+
+> "there also exists a CD56− NK cell subpopulation, namely CD3−CD4−CD14−CD19−CD16+NKp46+ lymphocytes"
+
+— Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892; PMCID:PMC5522883) · `EV00183` · verified: yes
+
+## dendritic cell
+
+> "DCs were defined as live, LIN(CD3, CD19, CD56)−CD14−HLA-DR+ cells."
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00084` · verified: not_checked
+
+> "CD14loCD16lo in human and macaque"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00085` · verified: yes
+
+## iNKT cell
+
+> "gating should include time, singlets, and scatter profile, followed by dead cell exclusion, CD14/CD19 dumping, and CD3 positivity"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00173` · verified: not_checked
+
+## innate lymphoid cell
+
+> "Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) FcRεR1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors)."
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00146` · verified: yes
+
+> "lineage cocktail (TCRα/β, TCRγ/δ, CD19, CD16, CD15, CD14, CD94, CD11c, BDCA-2, FcεRIα, glycophorin A, CD41, CD1a, and CD34)"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00150` · verified: yes
diff --git a/literature/by_marker/cd141.md b/literature/by_marker/cd141.md
new file mode 100644
index 0000000..51ff6a4
--- /dev/null
+++ b/literature/by_marker/cd141.md
@@ -0,0 +1,14 @@
+# CD141
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## dendritic cell
+
+> "DC1 corresponds to the cross-presenting CD141/BDCA-3+ cDC1, which is best marked by CLEC9A"
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00070` · verified: not_checked
+
+> "cDC1s can be best identified by expression of C-type lectin-like receptor (Clec)9A and cell adhesion molecule 1 (CADM1)...and also express high levels of CD141 and XCR1"
+
+— Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088; PMCID:PMC6532592) · `EV00071` · verified: no
diff --git a/literature/by_marker/cd15.md b/literature/by_marker/cd15.md
new file mode 100644
index 0000000..e83d138
--- /dev/null
+++ b/literature/by_marker/cd15.md
@@ -0,0 +1,10 @@
+# CD15
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## innate lymphoid cell
+
+> "lineage cocktail (TCRα/β, TCRγ/δ, CD19, CD16, CD15, CD14, CD94, CD11c, BDCA-2, FcεRIα, glycophorin A, CD41, CD1a, and CD34)"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00153` · verified: yes
diff --git a/literature/by_marker/cd16.md b/literature/by_marker/cd16.md
new file mode 100644
index 0000000..9fb4f6b
--- /dev/null
+++ b/literature/by_marker/cd16.md
@@ -0,0 +1,24 @@
+# CD16
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## NK cell
+
+> "NK cells are typically distinguished by their surface expression of CD16 (FcγRIIIA), CD94/NKG2 heterodimers, killer immunoglobulin-like receptors (KIRs), NKG2D, and NKp80 (21)."
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00192` · verified: yes
+
+> "The NK1 cluster was marked by high protein expression of CD16, CX3CR1, CD161, β7-integrin and CD38 (Fig. 1c,d)."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00193` · verified: yes
+
+> "Expression of the classic NK cell markers CD57 and CD16 was reduced or absent on NK2 cells compared with NK1 and NK3 cells, indicating that the NK2 population comprised CD56bright and early-stage CD56dim NK cells."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00194` · verified: yes
+
+## dendritic cell
+
+> "The DC4 cluster mapped to the CD141−CD1C− population and was accurately delineated by FCGR3A/CD16."
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00086` · verified: not_checked
diff --git a/literature/by_marker/cd161.md b/literature/by_marker/cd161.md
new file mode 100644
index 0000000..662205e
--- /dev/null
+++ b/literature/by_marker/cd161.md
@@ -0,0 +1,66 @@
+# CD161
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## MAIT cell
+
+> "Human MAIT cells were gated as Zombie−CD14−CD19−CD8α+CD161+Vα7.2+ cells"
+
+— García-Escribano et al. 2026 (PMID:42433370; DOI:10.3389/fimmu.2026.1852383; PMCID:PMC13349841) · `EV00113` · verified: yes
+
+> "Gene transcriptomic analysis has identified MAIT cell-specific markers, including TRAV1-2+ TCR, CD161, PLZF, and IL-18Rα"
+
+— Laub et al. 2025 (PMID:40746558; DOI:10.3389/fimmu.2025.1618393; PMCID:PMC12310680) · `EV00114` · verified: yes
+
+> "Surrogate markers, especially CD161 may lead to the inconsistent identification of MAIT cells, as CD161 can be downregulated in activation."
+
+— Azad et al. 2025 (PMID:41511352; DOI:10.3390/cells15010069; PMCID:PMC12785784) · `EV00115` · verified: exact_except_trailing_punctuation
+
+> "annotated cluster 2 into MAIT according to the high expression of KLRB1, SLC4A10, ZBTB16, RORA, and RORC"
+
+— Cai et al. 2026 (PMID:41804231; DOI:10.1111/cpr.70194; PMCID:PMC13325667) · `EV00116` · verified: yes
+
+## gamma-delta T cell
+
+> "γδ T cells were divided into two populations based on Vδ1 expression. Each population was subgated based on CD45RA and CD27 expression to differentiate naïve and memory cells and then gated based on CD161, CD4 and CD8 expression."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00101` · verified: no
+
+> "Comparison of CD161 expression between naïve and memory Vδ1+ and Vδ1− populations revealed a significant difference in both TEM cells and TCM cells (p < 0.0001), with Vδ1− cells having the highest surface expression of CD161."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00102` · verified: no
+
+> "Both methods show CD161 as a primary differentiating phenotypic marker for Vδ cell subsets."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00103` · verified: yes
+
+> "Overall, the pattern of marker expression on the eight clusters show that CD161 plays a central role in the differentiation of γδ T cell subtypes."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00104` · verified: no
+
+> "CD161 expression on γδ T cells is associated with enhanced IFN-γ and IL-17 production and enhanced endothelial transmigration."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00105` · verified: no
+
+> "CD161 is a C-type lectin-like membrane receptor expressed at high levels on NK, NKT, Th17, Mucosa Associated Invariant T cells (MAITs), non-MAIT CD8+, tissue-resident memory cells (TRMs)."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00106` · verified: exact_except_trailing_punctuation
+
+## innate lymphoid cell
+
+> "Within the Lin−CD127+ population, conventional ILCs expressed CD161 but not CD94"
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00130` · verified: yes
+
+> "ILC1s were identified through the expression of CD7, CD45, CD127, CD161, absent/low NKp46 and absent LIN2, and CRTH2."
+
+— Bento et al 2025 (DOI:10.3389/fimmu.2025.1568875; PMCID:PMC12187685) · `EV00132` · verified: yes
+
+> "we regularly detected small numbers of CD45+Lin–CD3–CD127+CD161+ cells (ie, bona fide ILCs"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00257` · verified: yes
+
+> "CD161, which is known to be present on NK cells, NKT cells, and T cells," … "is also expressed by human ILCs"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00258` · verified: yes
diff --git a/literature/by_marker/cd172a.md b/literature/by_marker/cd172a.md
new file mode 100644
index 0000000..b036000
--- /dev/null
+++ b/literature/by_marker/cd172a.md
@@ -0,0 +1,14 @@
+# CD172a
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## dendritic cell
+
+> "using CADM1 or XCR1 in combination with CD172a to separate cDC1s from cDC2s"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00072` · verified: yes
+
+> "CD172ahiCD1chi cDC2s"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00073` · verified: yes
diff --git a/literature/by_marker/cd183.md b/literature/by_marker/cd183.md
new file mode 100644
index 0000000..44d23b0
--- /dev/null
+++ b/literature/by_marker/cd183.md
@@ -0,0 +1,30 @@
+# CD183
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## T cell
+
+> "Th1, CXCR3+CCR6–; Th17, CXCR3–CCR6+; Th1–17, CXCR3+CCR6+"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00208` · verified: yes
+
+> "Th1 (CXCR3+CCR6–CCR4–), Th2 (CXCR3–CCR6–CCR4+), Th17 (CXCR3–CCR6+CCR4+)"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00209` · verified: yes
+
+> "Th1 (CXCR3+CCR4−CCR6− CD62LlowCD4+ T cells)"
+
+— Kamigaichi A et al. 2026 (PMID:42047825; DOI:10.1007/s00262-026-04357-4; PMCID:PMC13125411) · `EV00210` · verified: yes
+
+> "define (C) CD154+ Th1 (CXCR3+CCR4−CCR10−CCR6−), (D) CD154+ Th2 (CXCR3−CCR4+CCR10−CCR6−), (E) CD154+ Th17 (CXCR3−CCR4+CCR10−CCR6+)"
+
+— Pospich R et al. 2026 (PMID:42327791; DOI:10.3389/fimmu.2026.1798583; PMCID:PMC13275367) · `EV00211` · verified: yes
+
+> "Th1 (CXCR3+ CCR6−), Th17 (CXCR3− CCR6+), and Th2 (CXCR3− CCR6−"
+
+— Gholizadeh F et al. 2026 (PMID:41928597; DOI:10.1002/eji.70177; PMCID:PMC13047356) · `EV00212` · verified: yes
+
+> "human Th9 cells express CD183 (CXCR3), CD193 (CCR3), and CD196 (CCR6), but not CD194+(CCR4+) or D294 (CRTH2), which are expressed on the surface of Th2 cells"
+
+— Chen T et al. 2020 (DOI:10.3389/fimmu.2020.01026; PMCID:PMC7251969) · `EV00213` · verified: yes
diff --git a/literature/by_marker/cd185.md b/literature/by_marker/cd185.md
new file mode 100644
index 0000000..22fbe6e
--- /dev/null
+++ b/literature/by_marker/cd185.md
@@ -0,0 +1,52 @@
+# CD185
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "The CXCR5+ subgroup, now known as DN1, is the DN sub-population that expands in elderly healthy individuals, while the CXCR5- subgroup constitutes the extrafollicular DN2 subset."
+
+— Sachinidis & Garyfallos 2021 (PMID:34964023; DOI:10.31138/mjr.32.3.192; PMCID:PMC8693305) · `EV00046` · verified: no
+
+> "DN2 B cells are a unique double-negative population (IgD−CD27−) that displays extrafollicular characteristics, such as the lack of CXCR5 and CD62L expression."
+
+— Sachinidis & Garyfallos 2021 (PMID:34964023; DOI:10.31138/mjr.32.3.192; PMCID:PMC8693305) · `EV00047` · verified: yes
+
+> "CD19+IgD−CD27−CD21+ CD11c− T-bet− CXCR5+"
+
+— Sachinidis & Garyfallos 2021 (PMID:34964023; DOI:10.31138/mjr.32.3.192; PMCID:PMC8693305) · `EV00048` · verified: no
+
+> "CD21lo Tr cells expressed higher levels of markers of the early transitional compartment (IgM, CD24, CD10), but less CD21 and CXCR5"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00049` · verified: not_checked
+
+> "a decrease in follicular homing predisposition through CXCR5 and a corresponding increase in CXCR3"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00050` · verified: not_checked
+
+## T cell
+
+> "CXCR5+ Tfh vs. CXCR5− non‐Tfh"
+
+— Gholizadeh F et al. 2026 (PMID:41928597; DOI:10.1002/eji.70177; PMCID:PMC13047356) · `EV00214` · verified: yes
+
+> "CD3+CD4+CD45RO+PD-1highCXCR5+"
+
+— Liao H et al. 2025 (PMID:41351179; DOI:10.1186/s13075-025-03701-w; PMCID:PMC12797565) · `EV00215` · verified: yes
+
+> "CD3+CD4+CD45RO+PD-1highCXCR5−"
+
+— Liao H et al. 2025 (PMID:41351179; DOI:10.1186/s13075-025-03701-w; PMCID:PMC12797565) · `EV00216` · verified: yes
+
+> "pTfh (CXCR5+PD1+)"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00217` · verified: yes
+
+> "pTfh1 (CXCR3+CCR6–), pTfh2 (CXCR3–CCR6–), pTfh17 (CXCR3–CCR6+)"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00218` · verified: yes
+
+> "we used the following anti-chemokine receptors antibodies – CXCR5, CCR6, CXCR3, and CCR4"
+
+— Starshinova A et al. 2025 (PMID:41376646; DOI:10.3389/fimmu.2025.1614461; PMCID:PMC12685880) · `EV00219` · verified: yes
diff --git a/literature/by_marker/cd19.md b/literature/by_marker/cd19.md
new file mode 100644
index 0000000..ff63eed
--- /dev/null
+++ b/literature/by_marker/cd19.md
@@ -0,0 +1,46 @@
+# CD19
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "Mature B cells typically express both CD19 and CD20."
+
+— Griffin & Rothstein 2012 (PMID:22654880; DOI:10.3389/fimmu.2012.00122; PMCID:PMC3360193) · `EV00001` · verified: yes
+
+> "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired"
+
+— Griffin & Rothstein 2012 (PMID:22654880; DOI:10.3389/fimmu.2012.00122; PMCID:PMC3360193) · `EV00003` · verified: yes
+
+> "CD19+ B cells were then enriched to >98% using CD19 microbead magnetic separation"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00005` · verified: yes
+
+> "to positively select intact cells (Ir191+Ir193+), to positively select live cells (Rh103−Ir191+Ir193+), and to identify CD19+ and/or CD20+ B cells"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00006` · verified: no
+
+## NK cell
+
+> "ILCs lack expression of markers specific for other leukocytes, including antigen-specific T and B cell receptors (i.e., CD3/TCR and CD19/BCR)."
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00179` · verified: yes
+
+> "ILCs are identified as “lineage” (Lin) negative lymphocytes, lacking expression of surface markers more specifically expressed on T cells (CD3, CD5, TCR), B cells (CD19, CD20, BCR), myelomonocytic cells (CD14, CD15, CD36), and dendritic cells (DCs) (CD116, CD123, CD303)."
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00180` · verified: yes
+
+> "there also exists a CD56− NK cell subpopulation, namely CD3−CD4−CD14−CD19−CD16+NKp46+ lymphocytes"
+
+— Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892; PMCID:PMC5522883) · `EV00181` · verified: yes
+
+## innate lymphoid cell
+
+> "Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) FcRεR1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors)."
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00148` · verified: yes
+
+> "lineage cocktail (TCRα/β, TCRγ/δ, CD19, CD16, CD15, CD14, CD94, CD11c, BDCA-2, FcεRIα, glycophorin A, CD41, CD1a, and CD34)"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00152` · verified: yes
diff --git a/literature/by_marker/cd194.md b/literature/by_marker/cd194.md
new file mode 100644
index 0000000..4d00fc8
--- /dev/null
+++ b/literature/by_marker/cd194.md
@@ -0,0 +1,30 @@
+# CD194
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## T cell
+
+> "Th2 (CXCR3–CCR6–CCR4+), Th17 (CXCR3–CCR6+CCR4+)"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00220` · verified: yes
+
+> "cluster 9 was defined as Th2 cells, as they highly expressed CCR4 but did not express biomarkers of Tfh cells (CXCR5, PD-1), Th1 cells (CXCR3), Th17 cells (CCR6), and Treg cells (CD25, Foxp3)"
+
+— Zhu H et al. 2026 (PMID:41826820; DOI:10.1186/s10020-026-01455-y; PMCID:PMC13101149) · `EV00221` · verified: yes
+
+> "Th2 (CXCR3−CCR4+CCR6− CD62LlowCD4+ T cells)"
+
+— Kamigaichi A et al. 2026 (PMID:42047825; DOI:10.1007/s00262-026-04357-4; PMCID:PMC13125411) · `EV00222` · verified: yes
+
+> "Th17 (CXCR3−CCR4+CCR6+ CD62LlowCD4+ T cells)"
+
+— Kamigaichi A et al. 2026 (PMID:42047825; DOI:10.1007/s00262-026-04357-4; PMCID:PMC13125411) · `EV00223` · verified: yes
+
+> "We detected predominantly the marker combination described for Th2 cells (Figure 2D, CXCR3−CCR6−CCR10−CCR4+) and Th17 cells (Figure 2E, CXCR3−CCR6+CCR4+CCR10−) on SplB-specific T cells."
+
+— Pospich R et al. 2026 (PMID:42327791; DOI:10.3389/fimmu.2026.1798583; PMCID:PMC13275367) · `EV00224` · verified: exact_except_trailing_punctuation
+
+> "human Th9 cells express CD183 (CXCR3), CD193 (CCR3), and CD196 (CCR6), but not CD194+(CCR4+) or D294 (CRTH2), which are expressed on the surface of Th2 cells"
+
+— Chen T et al. 2020 (DOI:10.3389/fimmu.2020.01026; PMCID:PMC7251969) · `EV00225` · verified: yes
diff --git a/literature/by_marker/cd196.md b/literature/by_marker/cd196.md
new file mode 100644
index 0000000..110ad8b
--- /dev/null
+++ b/literature/by_marker/cd196.md
@@ -0,0 +1,30 @@
+# CD196
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## T cell
+
+> "Th17 (CXCR3–CCR6+CCR4+)"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00226` · verified: yes
+
+> "pTfh17 (CXCR3–CCR6+)"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00227` · verified: yes
+
+> "CD154+ Th17 (CXCR3−CCR4+CCR10−CCR6+)"
+
+— Pospich R et al. 2026 (PMID:42327791; DOI:10.3389/fimmu.2026.1798583; PMCID:PMC13275367) · `EV00228` · verified: yes
+
+> "Th17 (CXCR3−CCR4+CCR6+ CD62LlowCD4+ T cells)"
+
+— Kamigaichi A et al. 2026 (PMID:42047825; DOI:10.1007/s00262-026-04357-4; PMCID:PMC13125411) · `EV00229` · verified: yes
+
+> "human Th9 cells express CD183 (CXCR3), CD193 (CCR3), and CD196 (CCR6)"
+
+— Chen T et al. 2020 (DOI:10.3389/fimmu.2020.01026; PMCID:PMC7251969) · `EV00230` · verified: yes
+
+> "Th1 (CXCR3+ CCR6−), Th17 (CXCR3− CCR6+), and Th2 (CXCR3− CCR6−"
+
+— Gholizadeh F et al. 2026 (PMID:41928597; DOI:10.1002/eji.70177; PMCID:PMC13047356) · `EV00231` · verified: yes
diff --git a/literature/by_marker/cd1c.md b/literature/by_marker/cd1c.md
new file mode 100644
index 0000000..1af6093
--- /dev/null
+++ b/literature/by_marker/cd1c.md
@@ -0,0 +1,22 @@
+# CD1c
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## dendritic cell
+
+> "DC2 and DC3 correspond to new subdivisions of the CD1C/BDCA-1+ cDC2"
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00066` · verified: not_checked
+
+> "Although both cDC2 subsets can be characterized by CD1c expression, cDC2-A (CD32b+) are distinguished"
+
+— Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088; PMCID:PMC6532592) · `EV00067` · verified: yes
+
+> "CD172ahiCD1chi cDC2s"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00068` · verified: yes
+
+> "In the blood, DC subtypes include CD11C+ conventional DCs (cDCs), consisting of either CD141+ or CD1C+ cells"
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00069` · verified: not_checked
diff --git a/literature/by_marker/cd1d-galcer-tetramer.md b/literature/by_marker/cd1d-galcer-tetramer.md
new file mode 100644
index 0000000..ffcf370
--- /dev/null
+++ b/literature/by_marker/cd1d-galcer-tetramer.md
@@ -0,0 +1,18 @@
+# CD1d-α-GalCer Tetramer
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## iNKT cell
+
+> "the vast majority of α-GalCer loaded CD1d pentamer+ cells fall within the Vα24+Vβ11+ gate (median=99%), and the Vα24+Vβ11+ gate encompasses the majority of CD1d pentamer+ cells (median=99%)"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00169` · verified: not_checked
+
+> "CD1d and MR1 tetramer can easily be substituted into this panel in place of these MAIT and iNKT TCRs"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00170` · verified: not_checked
+
+> "Human T2NKT cells are conventionally detected with sulfatide-loaded CD1d tetramers; however, this method is noisy and fails to identify T2NKT cells that recognize other lipids."
+
+— Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473; PMCID:PMC9202826) · `EV00171` · verified: no
diff --git a/literature/by_marker/cd20.md b/literature/by_marker/cd20.md
new file mode 100644
index 0000000..68ebcc9
--- /dev/null
+++ b/literature/by_marker/cd20.md
@@ -0,0 +1,18 @@
+# CD20
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "Mature B cells typically express both CD19 and CD20."
+
+— Griffin & Rothstein 2012 (PMID:22654880; DOI:10.3389/fimmu.2012.00122; PMCID:PMC3360193) · `EV00002` · verified: yes
+
+> "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired"
+
+— Griffin & Rothstein 2012 (PMID:22654880; DOI:10.3389/fimmu.2012.00122; PMCID:PMC3360193) · `EV00004` · verified: yes
+
+> "to positively select intact cells (Ir191+Ir193+), to positively select live cells (Rh103−Ir191+Ir193+), and to identify CD19+ and/or CD20+ B cells"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00007` · verified: no
diff --git a/literature/by_marker/cd21.md b/literature/by_marker/cd21.md
new file mode 100644
index 0000000..2614042
--- /dev/null
+++ b/literature/by_marker/cd21.md
@@ -0,0 +1,18 @@
+# CD21
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "DN1: CD11c− CD21+" / "DN2: CD11c+ CD21−" / "DN3: CD11c− CD21−"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00039` · verified: not_checked
+
+> "CD19+IgD−CD27−CD21+ CD11c− T-bet− CXCR5+" [DN1 phenotype, Table 1] and "CD19+IgD−CD27−CD21− CD11c+ T-bet+CXCR5−" [DN2 phenotype] and "CD19+IgD−CD27−CD21− CD11c−"
+
+— Sachinidis & Garyfallos 2021 (PMID:34964023; DOI:10.31138/mjr.32.3.192; PMCID:PMC8693305) · `EV00040` · verified: no
+
+> "The gradual loss of CD10, CD5, and IgM and the upregulation of CD22, CD44, CD21, and CD23 as cells progress from immature to transitional (TI to T2 to T3) to mature naïve cells"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00041` · verified: no
diff --git a/literature/by_marker/cd24.md b/literature/by_marker/cd24.md
new file mode 100644
index 0000000..b4158fb
--- /dev/null
+++ b/literature/by_marker/cd24.md
@@ -0,0 +1,14 @@
+# CD24
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "Co-expression of high levels of CD24 and CD38 have also frequently been used to identify them, and it is important that CD27 be included if this is the case"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00018` · verified: yes
+
+> "**Tr**: CD19+ CD27− CD38int CD24+" [transitional B cell gating entry, Table 1] and "**N**: CD19+ CD27− CD38− CD24− IgD+" [naive B cell gating entry] and "**DN**: CD19+ CD27− CD38− CD24− IgD−"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00019` · verified: not_checked
diff --git a/literature/by_marker/cd25.md b/literature/by_marker/cd25.md
new file mode 100644
index 0000000..b223ed4
--- /dev/null
+++ b/literature/by_marker/cd25.md
@@ -0,0 +1,26 @@
+# CD25
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## T cell
+
+> "In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127"
+
+— Kamran M et al. 2025 (PMID:41394832; DOI:10.3389/fimmu.2025.1676937; PMCID:PMC12695756) · `EV00235` · verified: yes
+
+> "the CD4+CD25+CD127low/– population arguably contains a mixture of Treg cells with variable degrees of commitment to the Treg cell lineage."
+
+— Morgana F et al. 2026 (PMID:41645582; DOI:10.1002/eji.70107; PMCID:PMC12877429) · `EV00238` · verified: yes
+
+> "Tregs (FOXP3+CD25+), pTfh (CXCR5+PD1+)"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00240` · verified: yes
+
+> "nonnaive CD4 T cells" analyzed using "FOXP3, CD45RA, CD25, CCR4, CCR6, CXCR5, CXCR3, and CD127"
+
+— Nalubega M et al. 2026 (PMID:41757944; DOI:10.1093/infdis/jiag115; PMCID:PMC13127770) · `EV00241` · verified: yes
+
+> "are typically identified by the expression of the transcription factor FoxP3 or the IL-2 receptor α-chain (CD25)" … "the absence or low expression of the IL-7 receptor α-chain (CD127) has been proposed as a distinguishing marker for Tregs"
+
+— Kamran M et al. 2025 (PMID:41394832; DOI:10.3389/fimmu.2025.1676937; PMCID:PMC12695756) · `EV00259` · verified: yes
diff --git a/literature/by_marker/cd27.md b/literature/by_marker/cd27.md
new file mode 100644
index 0000000..d3bbdd1
--- /dev/null
+++ b/literature/by_marker/cd27.md
@@ -0,0 +1,24 @@
+# CD27
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "transitional (IgD+CD27−CD10+), and naïve (IgD+CD27−CD10−)"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00008` · verified: yes
+
+> "**M**: CD19+ CD27+ CD38−/lo" [memory B cell gating entry] and "**N**: CD19+ CD27− CD38− CD24− IgD+"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00009` · verified: not_checked
+
+> "Double negative (DN) B cells, also known as atypical memory B cells, constitute a B cell population that lacks expression of immunoglobulin D and CD27 memory marker."
+
+— Sachinidis & Garyfallos 2021 (PMID:34964023; DOI:10.31138/mjr.32.3.192; PMCID:PMC8693305) · `EV00010` · verified: yes
+
+## T cell
+
+> "Zole-expanded Vδ2 γδ T cells displayed a highly homogeneous effector memory (EM) phenotype (CD27-CD45RA-)"
+
+— Kelm M et al. 2026 (PMID:41727470; DOI:10.3389/fimmu.2026.1739493; PMCID:PMC12920462) · `EV00262` · verified: yes
diff --git a/literature/by_marker/cd294.md b/literature/by_marker/cd294.md
new file mode 100644
index 0000000..ffa2a2b
--- /dev/null
+++ b/literature/by_marker/cd294.md
@@ -0,0 +1,32 @@
+# CD294
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## T cell
+
+> "human Th9 cells express CD183 (CXCR3), CD193 (CCR3), and CD196 (CCR6), but not CD194+(CCR4+) or D294 (CRTH2), which are expressed on the surface of Th2 cells"
+
+— Chen T et al. 2020 (DOI:10.3389/fimmu.2020.01026; PMCID:PMC7251969) · `EV00232` · verified: yes
+
+## innate lymphoid cell
+
+> "group 2 ILCs (ILC2s) (CRTH2+), and group 3 ILCs (ILC3s) (CD117+CRTH2–)"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00133` · verified: yes
+
+> "ILC2s as CRTH2+ CD117−/+"
+
+— Bonne-Année, Bush & Nutman 2019 (PMID:31586075; DOI:10.1038/s41598-019-50308-8; PMCID:PMC6778123) · `EV00134` · verified: yes
+
+> "ILC2 were identified through the positive expression of CD7, CD45, CD127, CD161, CRTH2, absent/low NKp46 and absent LIN2."
+
+— Bento et al 2025 (DOI:10.3389/fimmu.2025.1568875; PMCID:PMC12187685) · `EV00135` · verified: yes
+
+> "ILC3 were identified through the positive expression of CD7, CD45, CD127, CD161 and NKp46 and absence of CRTH2 and LIN2."
+
+— Bento et al 2025 (DOI:10.3389/fimmu.2025.1568875; PMCID:PMC12187685) · `EV00136` · verified: yes
+
+> "ILC1s as CD117− CRTH2−"
+
+— Bonne-Année, Bush & Nutman 2019 (PMID:31586075; DOI:10.1038/s41598-019-50308-8; PMCID:PMC6778123) · `EV00137` · verified: yes
diff --git a/literature/by_marker/cd3.md b/literature/by_marker/cd3.md
new file mode 100644
index 0000000..da142fc
--- /dev/null
+++ b/literature/by_marker/cd3.md
@@ -0,0 +1,96 @@
+# CD3
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "B cells were enriched using negative selection of CD2, CD3, CD14, CD16, CD36, CD42b, CD56, CD66b and CD123."
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00052` · verified: not_checked
+
+> "Cells were gated as CD3−CD14−CD16−CD19+CD38+CD27+ single live cells"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00055` · verified: not_checked
+
+> "a population of enriched B cells (CD3−CD14−) was collected"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00057` · verified: yes
+
+## MAIT cell
+
+> "demonstrated the flow cytometry using CD3, CD4, CD8, TCRβ, MR1 tetramer"
+
+— Cai et al. 2026 (PMID:41804231; DOI:10.1111/cpr.70194; PMCID:PMC13325667) · `EV00107` · verified: yes
+
+## NK cell
+
+> "Natural killer cells are prototypic members of the innate lymphoid cell (ILC) family and characterized in humans by expression of the phenotypic marker CD56 in the absence of CD3."
+
+— Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892; PMCID:PMC5522883) · `EV00176` · verified: yes
+
+> "ILCs are identified as “lineage” (Lin) negative lymphocytes, lacking expression of surface markers more specifically expressed on T cells (CD3, CD5, TCR), B cells (CD19, CD20, BCR), myelomonocytic cells (CD14, CD15, CD36), and dendritic cells (DCs) (CD116, CD123, CD303)."
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00177` · verified: yes
+
+> "there also exists a CD56− NK cell subpopulation, namely CD3−CD4−CD14−CD19−CD16+NKp46+ lymphocytes"
+
+— Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892; PMCID:PMC5522883) · `EV00178` · verified: yes
+
+## T cell
+
+> "CD3+/CD8−/CD4+/CCR7+/CD45RA+"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00201` · verified: yes
+
+> "CD3+/CD8+/CD4−/CCR7+/CD45RA+"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00202` · verified: yes
+
+> "Purity of PHA- and Zole- expanded αβ and γδ T-cell cultures and MACS-isolated T-cell populations were assessed by flow cytometry using anti-CD3, CD4, CD8, γδ TCR, and αβ TCR monoclonal antibodies."
+
+— Kelm M et al. 2026 (PMID:41727470; DOI:10.3389/fimmu.2026.1739493; PMCID:PMC12920462) · `EV00203` · verified: yes
+
+## dendritic cell
+
+> "DCs were defined as live, LIN(CD3, CD19, CD56)−CD14−HLA-DR+ cells."
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00087` · verified: not_checked
+
+## gamma-delta T cell
+
+> "Cytobank 5.0 was used (following quality control and data scaling) to gate live/CD3+/γδ TCR+ cells."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00088` · verified: no
+
+## iNKT cell
+
+> "both identified as CD3+ and defined by their TCR specificities"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00154` · verified: not_checked
+
+> "we defined iNKT cell subsets by the co-expression of TCR Vα24 and Vβ11 among CD3+ cells, and further through their expression of CD4 and CD161"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00155` · verified: not_checked
+
+> "gating should include time, singlets, and scatter profile, followed by dead cell exclusion, CD14/CD19 dumping, and CD3 positivity"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00156` · verified: not_checked
+
+> "the four CD3+ T cell subsets can be gated on, as CD8 and CD4 bulk T cells, MAIT cells, (CD161bright Vα7.2 TCR+), and iNKT cells (Vα24 TCR+ Vβ11 TCR+)"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00157` · verified: not_checked
+
+## innate lymphoid cell
+
+> "We gated for lymphocytes, excluded doublets and dead cells and selected CD45+CD3− cells"
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00126` · verified: yes
+
+> "CD45+Lin–CD3–CD161+CD127+ cells termed ILCs"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00127` · verified: no
+
+> "Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes)"
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00256` · verified: yes
diff --git a/literature/by_marker/cd303.md b/literature/by_marker/cd303.md
new file mode 100644
index 0000000..72847be
--- /dev/null
+++ b/literature/by_marker/cd303.md
@@ -0,0 +1,18 @@
+# CD303
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## dendritic cell
+
+> "pDCs (e.g. IL3RA/CD123, CLEC4C/CD303)"
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00079` · verified: not_checked
+
+> "Traditionally defined as CD123+ BDCA-2+ cells, pDCs"
+
+— Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088; PMCID:PMC6532592) · `EV00080` · verified: yes
+
+> "CD123hiCD303hi (human) pDCs"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00081` · verified: yes
diff --git a/literature/by_marker/cd34.md b/literature/by_marker/cd34.md
new file mode 100644
index 0000000..c3d5184
--- /dev/null
+++ b/literature/by_marker/cd34.md
@@ -0,0 +1,14 @@
+# CD34
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## innate lymphoid cell
+
+> "Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) FcRεR1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors)."
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00147` · verified: yes
+
+> "lineage cocktail (TCRα/β, TCRγ/δ, CD19, CD16, CD15, CD14, CD94, CD11c, BDCA-2, FcεRIα, glycophorin A, CD41, CD1a, and CD34)"
+
+— Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025; PMCID:PMC9130781) · `EV00151` · verified: yes
diff --git a/literature/by_marker/cd38.md b/literature/by_marker/cd38.md
new file mode 100644
index 0000000..e810a6d
--- /dev/null
+++ b/literature/by_marker/cd38.md
@@ -0,0 +1,18 @@
+# CD38
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "T1 (CD38+++CD24hiCD10++IgDlo/−), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00011` · verified: yes
+
+> "Co-expression of high levels of CD24 and CD38 have also frequently been used to identify them, and it is important that CD27 be included if this is the case"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00012` · verified: yes
+
+> "**ASC**: CD19+ CD27+ CD38hi" and "**M**: CD19+ CD27+ CD38−/lo" and "**Tr**: CD19+ CD27− CD38int CD24+"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00013` · verified: not_checked
diff --git a/literature/by_marker/cd4.md b/literature/by_marker/cd4.md
new file mode 100644
index 0000000..6c3ec43
--- /dev/null
+++ b/literature/by_marker/cd4.md
@@ -0,0 +1,14 @@
+# CD4
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## T cell
+
+> "CD3+/CD8−/CD4+/CCR7+/CD45RA−"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00204` · verified: yes
+
+> "CD3+/CD8+/CD4−/CCR7+/CD45RA+"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00206` · verified: yes
diff --git a/literature/by_marker/cd45ra.md b/literature/by_marker/cd45ra.md
new file mode 100644
index 0000000..2268d63
--- /dev/null
+++ b/literature/by_marker/cd45ra.md
@@ -0,0 +1,26 @@
+# CD45RA
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## T cell
+
+> "CD3+/CD8−/CD4+/CCR7+/CD45RA+"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00243` · verified: yes
+
+> "CD3+/CD8−/CD4+/CCR7+/CD45RA−"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00245` · verified: yes
+
+> "CD3+/CD8−/CD4+/CCR7−/CD45RA+"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00247` · verified: yes
+
+> "CD45RA and CCR7 – CD4+ T cells were divided into four maturation subsets"
+
+— Starshinova A et al. 2025 (PMID:41376646; DOI:10.3389/fimmu.2025.1614461; PMCID:PMC12685880) · `EV00249` · verified: yes
+
+> "Gating strategy identifying Tcm (Q1: CD4+ CD45RA− CCR7+) and Tem (Q4: CD4+ CD45RA− CCR7−)"
+
+— Gholizadeh F et al. 2026 (PMID:41928597; DOI:10.1002/eji.70177; PMCID:PMC13047356) · `EV00263` · verified: yes
diff --git a/literature/by_marker/cd56.md b/literature/by_marker/cd56.md
new file mode 100644
index 0000000..d9b161a
--- /dev/null
+++ b/literature/by_marker/cd56.md
@@ -0,0 +1,64 @@
+# CD56
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "B cells were enriched using negative selection of CD2, CD3, CD14, CD16, CD36, CD42b, CD56, CD66b and CD123."
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00053` · verified: not_checked
+
+## NK cell
+
+> "Natural killer cells are prototypic members of the innate lymphoid cell (ILC) family and characterized in humans by expression of the phenotypic marker CD56 in the absence of CD3."
+
+— Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892; PMCID:PMC5522883) · `EV00174` · verified: yes
+
+> "human NK cells are typically divided into two main categories on the basis of the density of CD56, the 140-kDa isoform of the neural cell adhesion molecule (NCAM)2, on the cell surface: CD56bright and CD56dim NK cells."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00175` · verified: yes
+
+> "They are usually further divided into two subsets based on their surface level expression of CD56 (3). Whereas most NK cells in peripheral blood are CD56dim, CD56bright NK cells are more abundant in tissues."
+
+— Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892; PMCID:PMC5522883) · `EV00186` · verified: yes
+
+> "They are usually further divided into two subsets based on their surface level expression of CD56 (3). Whereas most NK cells in peripheral blood are CD56dim, CD56bright NK cells are more abundant in tissues."
+
+— Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892; PMCID:PMC5522883) · `EV00187` · verified: yes
+
+> "Two subsets of human peripheral blood (PB) NK cells can be distinguished according to their relative expression of the pan-NK cell surface marker, CD56 (NCAM-1): “CD56bright” and “CD56dim” (22, 23). CD56bright human NK cells express high levels of CD62L (l-selectin) and CD94 but absent or low levels of CD16 and KIRs; they predominate in secondary lymphoid tissues (SLTs) such as lymph nodes (LNs) and tonsils; they show low baseline perforin expression and cytotoxic activity ex vivo; and they rapidly produce cytokines, including IFN-γ, following stimulation by monocyte-derived cytokines (“monokines”), such as IL-12, IL-15, and IL-18 (22). In contrast, CD56dim NK cells are CD16hi and express more KIRs but less CD94 and CD62L; they predominate in PB; they show high baseline perforin expression and cytotoxicity against MHC class I negative target cells; and they preferentially produce cytokines in response to direct target cell interactions rather than via monokine stimulation (3)."
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00188` · verified: yes
+
+> "Two subsets of human peripheral blood (PB) NK cells can be distinguished according to their relative expression of the pan-NK cell surface marker, CD56 (NCAM-1): “CD56bright” and “CD56dim” (22, 23). CD56bright human NK cells express high levels of CD62L (l-selectin) and CD94 but absent or low levels of CD16 and KIRs; they predominate in secondary lymphoid tissues (SLTs) such as lymph nodes (LNs) and tonsils; they show low baseline perforin expression and cytotoxic activity ex vivo; and they rapidly produce cytokines, including IFN-γ, following stimulation by monocyte-derived cytokines (“monokines”), such as IL-12, IL-15, and IL-18 (22). In contrast, CD56dim NK cells are CD16hi and express more KIRs but less CD94 and CD62L; they predominate in PB; they show high baseline perforin expression and cytotoxicity against MHC class I negative target cells; and they preferentially produce cytokines in response to direct target cell interactions rather than via monokine stimulation (3)."
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00189` · verified: yes
+
+> "The NK2 cluster was defined by high expression of CD56, CD27, CD44, CD54, CD45RB, CD314 (NKG2D) and CD335 (NKp46) and little or no expression of CD16 and CD57 at the protein level (Fig. 1c,d)."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00190` · verified: yes
+
+> "The NK2 cluster was defined by high expression of CD56, CD27, CD44, CD54, CD45RB, CD314 (NKG2D) and CD335 (NKp46) and little or no expression of CD16 and CD57 at the protein level (Fig. 1c,d)."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00191` · verified: yes
+
+## iNKT cell
+
+> "T2NKT cells were identified as CD3+ CD56+ CD161+ TCR-γδ- TCRVα7.2- and TCRVα24- cells."
+
+— Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473; PMCID:PMC9202826) · `EV00172` · verified: no
+
+## innate lymphoid cell
+
+> "(*) LIN2 is cocktail of the following antibodies: CD3-FITC (SK7), CD14-FITC (SJ25C1), CD19-FITC (L27), CD20-FITC (MφP9), and CD56-FITC (NCAM16.2)."
+
+— Bento et al 2025 (DOI:10.3389/fimmu.2025.1568875; PMCID:PMC12187685) · `EV00143` · verified: yes
+
+> Lineage markers include: "CD3, CD4, CD8, CD14, CD16, CD19, CD56, CD11c, CD11b, FcεR1a"
+
+— Bonne-Année, Bush & Nutman 2019 (PMID:31586075; DOI:10.1038/s41598-019-50308-8; PMCID:PMC6778123) · `EV00144` · verified: no
+
+> "Similar to ILC3s, CD94+ ILCs partly expressed NKp44 and IL‐1R1, and also CD117, CD56, NKG2A"
+
+— Krabbendam et al 2021 (PMID:33300130; DOI:10.1002/eji.202048696; PMCID:PMC8248192) · `EV00145` · verified: yes
diff --git a/literature/by_marker/cd57.md b/literature/by_marker/cd57.md
new file mode 100644
index 0000000..d44c88d
--- /dev/null
+++ b/literature/by_marker/cd57.md
@@ -0,0 +1,18 @@
+# CD57
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## NK cell
+
+> "Further distinctions in the CD56dim population are made on the basis of expression of the CD57 carbohydrate moiety3 on the cell surface and the absence of CD94–NKG2A and CD62L; cells with these features comprise a more mature subset4–7."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00195` · verified: yes
+
+> "this cluster's preferential expression of CD57 and PRDM1 suggests that it also includes mature CD57+CD56dim NK cells that are not produced in response to HCMV."
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00196` · verified: no
+
+> "some that were NKp80+CD16+ and coexpressed KIRs and CD57, the latter of which has been associated with terminal maturation and may represent a putative “stage 6” of human NK cell development"
+
+— Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360; PMCID:PMC5366880) · `EV00197` · verified: yes
diff --git a/literature/by_marker/cd64.md b/literature/by_marker/cd64.md
new file mode 100644
index 0000000..e42a799
--- /dev/null
+++ b/literature/by_marker/cd64.md
@@ -0,0 +1,14 @@
+# CD64
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## dendritic cell
+
+> "In human and macaque, CD64 cannot be used, as cDCs also express some CD64."
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00082` · verified: exact_except_trailing_punctuation
+
+> "CD64 is highly expressed on Macs"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00083` · verified: yes
diff --git a/literature/by_marker/cd8.md b/literature/by_marker/cd8.md
new file mode 100644
index 0000000..a2005ad
--- /dev/null
+++ b/literature/by_marker/cd8.md
@@ -0,0 +1,14 @@
+# CD8
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## T cell
+
+> "CD3+/CD8−/CD4+/CCR7+/CD45RA−"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00205` · verified: yes
+
+> "CD3+/CD8+/CD4−/CCR7+/CD45RA+"
+
+— Finak G et al. 2016 (PMID:26861911; DOI:10.1038/srep20686; PMCID:PMC4748244) · `EV00207` · verified: yes
diff --git a/literature/by_marker/fcer1a.md b/literature/by_marker/fcer1a.md
new file mode 100644
index 0000000..ea6ce43
--- /dev/null
+++ b/literature/by_marker/fcer1a.md
@@ -0,0 +1,10 @@
+# FceR1a
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## dendritic cell
+
+> "CD1C+ DCs (DC2 and DC3) expressed unique markers (e.g. CD1C, CLEC10A, FCER1A, FCGR2B, and CD1D"
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00074` · verified: not_checked
diff --git a/literature/by_marker/hla-dr.md b/literature/by_marker/hla-dr.md
new file mode 100644
index 0000000..fec27ad
--- /dev/null
+++ b/literature/by_marker/hla-dr.md
@@ -0,0 +1,24 @@
+# HLA-DR
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## NK cell
+
+> "Notably, NK3B (cluster 1) was distinguished by expression of members of the HLA-D gene family, CD74, CCL5, CD7 and KLRC1, and NK3A exhibited enhanced cytotoxic capabilities (through expression of GZMA, GZMB and PRF1)"
+
+— Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0; PMCID:PMC11291291) · `EV00198` · verified: yes
+
+## dendritic cell
+
+> "DCs were defined as live, LIN(CD3, CD19, CD56)−CD14−HLA-DR+ cells."
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00063` · verified: not_checked
+
+> "Numerous studies have shown that human dendritic cells express high levels of major histocompatibility complex (MHC) class II (e.g., HLA-DR)"
+
+— Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573) · `EV00064` · verified: not_checked
+
+> "human pDCs (defined as CD45+CD11cloHLADRhi cells)"
+
+— Guilliams M et al. 2016 (PMID:27637149; DOI:10.1016/j.immuni.2016.08.057; PMCID:PMC5040826) · `EV00065` · verified: no
diff --git a/literature/by_marker/iga.md b/literature/by_marker/iga.md
new file mode 100644
index 0000000..746c669
--- /dev/null
+++ b/literature/by_marker/iga.md
@@ -0,0 +1,22 @@
+# IgA
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "naïve B cells express immunoglobulin (Ig)D and IgM and undergo isotype switching to produce IgM, IgA, IgG, or IgE exclusively"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00027` · verified: yes
+
+> "CD73+ MBCs are also proportionally more isotype-switched than CD73– MBCs, allowing them to produce IgG and IgA antibodies to facilitate a more diverse set of effector functions"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00030` · verified: no
+
+> "cluster 4 was IgG1 (IGHG1) dominant with minimal contributions from other isotypes, cluster 7 was more balanced but with a slight bias towards IgA (IGHA1/IGHA2) overall"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00031` · verified: yes
+
+> "Consistent with the B cell antigen receptor-sequencing data, SARS-CoV-2-specific responsiveness was broad, with participation of IgM, IgA and IgG antibodies."
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00035` · verified: not_checked
diff --git a/literature/by_marker/igd.md b/literature/by_marker/igd.md
new file mode 100644
index 0000000..2b5913e
--- /dev/null
+++ b/literature/by_marker/igd.md
@@ -0,0 +1,26 @@
+# IgD
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "naïve B cells express immunoglobulin (Ig)D and IgM and undergo isotype switching to produce IgM, IgA, IgG, or IgE exclusively"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00020` · verified: yes
+
+> "**N**: CD19+ CD27− CD38− CD24− IgD+"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00021` · verified: not_checked
+
+> "**usM**: IgM+ IgD+" [unswitched memory] / "**mM**: IgM+ IgD−" [IgM-only memory] / "**sM**: IgM− IgD−"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00022` · verified: not_checked
+
+> "Double negative (DN) B cells, also known as atypical memory B cells, constitute a B cell population that lacks expression of immunoglobulin D and CD27 memory marker."
+
+— Sachinidis & Garyfallos 2021 (PMID:34964023; DOI:10.31138/mjr.32.3.192; PMCID:PMC8693305) · `EV00023` · verified: yes
+
+> "T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)"
+
+— Martin et al. 2016 (PMID:27994589; DOI:10.3389/fimmu.2016.00546; PMCID:PMC5133252) · `EV00024` · verified: yes
diff --git a/literature/by_marker/ige.md b/literature/by_marker/ige.md
new file mode 100644
index 0000000..fd5b39a
--- /dev/null
+++ b/literature/by_marker/ige.md
@@ -0,0 +1,10 @@
+# IgE
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "naïve B cells express immunoglobulin (Ig)D and IgM and undergo isotype switching to produce IgM, IgA, IgG, or IgE exclusively"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00028` · verified: yes
diff --git a/literature/by_marker/igg.md b/literature/by_marker/igg.md
new file mode 100644
index 0000000..f2fb070
--- /dev/null
+++ b/literature/by_marker/igg.md
@@ -0,0 +1,18 @@
+# IgG
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "naïve B cells express immunoglobulin (Ig)D and IgM and undergo isotype switching to produce IgM, IgA, IgG, or IgE exclusively"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00026` · verified: yes
+
+> "CD73+ MBCs are also proportionally more isotype-switched than CD73– MBCs, allowing them to produce IgG and IgA antibodies to facilitate a more diverse set of effector functions"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00029` · verified: no
+
+> "Consistent with the B cell antigen receptor-sequencing data, SARS-CoV-2-specific responsiveness was broad, with participation of IgM, IgA and IgG antibodies."
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00034` · verified: not_checked
diff --git a/literature/by_marker/igm.md b/literature/by_marker/igm.md
new file mode 100644
index 0000000..ea557f8
--- /dev/null
+++ b/literature/by_marker/igm.md
@@ -0,0 +1,18 @@
+# IgM
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## B cell
+
+> "naïve B cells express immunoglobulin (Ig)D and IgM and undergo isotype switching to produce IgM, IgA, IgG, or IgE exclusively"
+
+— McGrath, Li & Wilson 2022 (PMID:35393268; DOI:10.1016/j.it.2022.03.005; PMCID:PMC8977948) · `EV00025` · verified: yes
+
+> "**usM**: IgM+ IgD+" [unswitched memory] / "**mM**: IgM+ IgD−" [IgM-only memory] / "**sM**: IgM− IgD−"
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00032` · verified: not_checked
+
+> "Consistent with the B cell antigen receptor-sequencing data, SARS-CoV-2-specific responsiveness was broad, with participation of IgM, IgA and IgG antibodies."
+
+— Woodruff et al. 2020 (PMID:33028979; DOI:10.1038/s41590-020-00814-z) · `EV00033` · verified: not_checked
diff --git a/literature/by_marker/mr1-tetramer.md b/literature/by_marker/mr1-tetramer.md
new file mode 100644
index 0000000..9e95d15
--- /dev/null
+++ b/literature/by_marker/mr1-tetramer.md
@@ -0,0 +1,22 @@
+# MR1 Tetramer
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## MAIT cell
+
+> "The most specific method of identifying MAIT cells is by using MR1-5-OP-RU tetramers in flow cytometry."
+
+— Azad et al. 2025 (PMID:41511352; DOI:10.3390/cells15010069; PMCID:PMC12785784) · `EV00117` · verified: exact_except_trailing_punctuation
+
+> "MAIT cells were isolated from PBMCs using a 5-OP-RU-loaded PE-conjugated MR1 tetramer"
+
+— García-Escribano et al. 2026 (PMID:42433370; DOI:10.3389/fimmu.2026.1852383; PMCID:PMC13349841) · `EV00118` · verified: yes
+
+> "performed longitudinal monitoring of circulating MAIT cells using MR1‐tetramer staining"
+
+— Cai et al. 2026 (PMID:41804231; DOI:10.1111/cpr.70194; PMCID:PMC13325667) · `EV00119` · verified: yes
+
+> "The MAIT cell TCR recognizes a series of MR1-binding ligands which includes endogenous bile acids, drug molecules, folate, and riboflavin derivatives"
+
+— Azad et al. 2025 (PMID:41511352; DOI:10.3390/cells15010069; PMCID:PMC12785784) · `EV00120` · verified: yes
diff --git a/literature/by_marker/tcr-v-1.md b/literature/by_marker/tcr-v-1.md
new file mode 100644
index 0000000..02b75eb
--- /dev/null
+++ b/literature/by_marker/tcr-v-1.md
@@ -0,0 +1,26 @@
+# TCR Vδ1
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## gamma-delta T cell
+
+> "Vδ1+ T cells are mainly found in the mucosal tissues (intestinal tissues) and epithelial tissues (such as skin)"
+
+— Wang et al. 2026 (PMID:42344895; DOI:10.3389/fimmu.2026.1827307; PMCID:PMC13286967) · `EV00096` · verified: yes
+
+> "Vδ1+ T cells are the primary tissue-resident γδ T cell subset"
+
+— Wang et al. 2026 (PMID:42344895; DOI:10.3389/fimmu.2026.1827307; PMCID:PMC13286967) · `EV00097` · verified: no
+
+> "The Vδ1 chain can pair with multiple γ chains (e.g., Vγ2, Vγ3, Vγ4)"
+
+— Wang et al. 2026 (PMID:42344895; DOI:10.3389/fimmu.2026.1827307; PMCID:PMC13286967) · `EV00098` · verified: yes
+
+> "Vδ1+ cells maintain a predominant population of TEM/TEMRA γδ T cells"
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00099` · verified: no
+
+> "Vδ1+ and Vδ1− (as a percentage of γδ T cells) of 30.6% (± SD 27%) and 69.2% (± SD 27%) respectively."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00100` · verified: no
diff --git a/literature/by_marker/tcr-v-11.md b/literature/by_marker/tcr-v-11.md
new file mode 100644
index 0000000..25bbaee
--- /dev/null
+++ b/literature/by_marker/tcr-v-11.md
@@ -0,0 +1,26 @@
+# TCR Vβ11
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## iNKT cell
+
+> "iNKT cells possess an invariant TCR Vα24-Jα18α chain paired with TCR Vβ11, which mainly responds to α-galactosylceramide glycopeptide (αGalCer)."
+
+— Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473; PMCID:PMC9202826) · `EV00164` · verified: yes
+
+> "iNKT cells, can be identified in humans through expression of their invariant alpha (Vα24) and beta (Vβ11) TCR segments"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00165` · verified: not_checked
+
+> "we defined iNKT cell subsets by the co-expression of TCR Vα24 and Vβ11 among CD3+ cells, and further through their expression of CD4 and CD161"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00166` · verified: not_checked
+
+> "Vβ11 TCR PE C21 iNKT cell lineage"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00167` · verified: not_checked
+
+> "the Vα24+Vβ11+ gate encompasses the majority of CD1d pentamer+ cells (median=99%)"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00168` · verified: not_checked
diff --git a/literature/by_marker/tcr-v-2.md b/literature/by_marker/tcr-v-2.md
new file mode 100644
index 0000000..f4070c9
--- /dev/null
+++ b/literature/by_marker/tcr-v-2.md
@@ -0,0 +1,26 @@
+# TCR Vδ2
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## gamma-delta T cell
+
+> "Vδ2 cells comprise 50–90% of γδ T cells in the circulation and are both effectors and antigen-presenting cells (APCs)."
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00089` · verified: yes
+
+> "The most abundant T cell subtype in human peripheral blood is the Vδ2+ T cell."
+
+— Wang et al. 2026 (PMID:42344895; DOI:10.3389/fimmu.2026.1827307; PMCID:PMC13286967) · `EV00090` · verified: yes
+
+> "It accounts for approximately 50% to 95% of total γδ T cells"
+
+— Wang et al. 2026 (PMID:42344895; DOI:10.3389/fimmu.2026.1827307; PMCID:PMC13286967) · `EV00091` · verified: yes
+
+> "Vδ2+ T cells, represented by Vγ9Vδ2 T cells, the dominant circulating subset in humans"
+
+— Laub et al. 2025 (PMID:40746558; DOI:10.3389/fimmu.2025.1618393; PMCID:PMC12310680) · `EV00092` · verified: yes
+
+> "Vδ1− cells are likely to be the predominant Vδ2+ in circulation"
+
+— Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w; PMCID:PMC8862246) · `EV00093` · verified: yes
diff --git a/literature/by_marker/tcr-v-7-2.md b/literature/by_marker/tcr-v-7-2.md
new file mode 100644
index 0000000..def805c
--- /dev/null
+++ b/literature/by_marker/tcr-v-7-2.md
@@ -0,0 +1,26 @@
+# TCR Vα7.2
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## MAIT cell
+
+> "the semi-invariant conserved MAIT TCR predominantly utilizes TRAV1-2 (Vα7.2 in humans)"
+
+— Laub et al. 2025 (PMID:40746558; DOI:10.3389/fimmu.2025.1618393; PMCID:PMC12310680) · `EV00108` · verified: yes
+
+> "their semi-invariant TCR typically comprises a concrete TCRα chain (encoded by *TRAV1-2/TRAJ33* genes)"
+
+— García-Escribano et al. 2026 (PMID:42433370; DOI:10.3389/fimmu.2026.1852383; PMCID:PMC13349841) · `EV00109` · verified: yes
+
+> "In humans, the majority of MAIT cells are defined as CD8+CD161+Vα7.2+ T cells"
+
+— García-Escribano et al. 2026 (PMID:42433370; DOI:10.3389/fimmu.2026.1852383; PMCID:PMC13349841) · `EV00110` · verified: yes
+
+> "Circulating MAIT cells from healthy donors can be identified using surrogate set of markers TCRVα7.2+ CD161+ (and/or CD26+)."
+
+— Azad et al. 2025 (PMID:41511352; DOI:10.3390/cells15010069; PMCID:PMC12785784) · `EV00111` · verified: yes
+
+> "Using TCR Vα7.2 and CD161, we identified MAIT cells in human liver tissues"
+
+— Cai et al. 2026 (PMID:41804231; DOI:10.1111/cpr.70194; PMCID:PMC13325667) · `EV00112` · verified: yes
diff --git a/literature/by_marker/tcr-v-9.md b/literature/by_marker/tcr-v-9.md
new file mode 100644
index 0000000..e466027
--- /dev/null
+++ b/literature/by_marker/tcr-v-9.md
@@ -0,0 +1,14 @@
+# TCR Vγ9
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## gamma-delta T cell
+
+> "Most predominantly, it pairs with the Vγ9 chain forming a functional heterodimer, Therefore, this cell is also known as Vγ9Vδ2 T cell"
+
+— Wang et al. 2026 (PMID:42344895; DOI:10.3389/fimmu.2026.1827307; PMCID:PMC13286967) · `EV00094` · verified: yes
+
+> "Vδ2+ γδ T cells, the dominant circulating subset in humans, are activated by non-peptidic phosphorylated intermediates of the mevalonate pathway."
+
+— Laub et al. 2025 (PMID:40746558; DOI:10.3389/fimmu.2025.1618393; PMCID:PMC12310680) · `EV00095` · verified: no
diff --git a/literature/by_marker/tcr.md b/literature/by_marker/tcr.md
new file mode 100644
index 0000000..f7b9d2c
--- /dev/null
+++ b/literature/by_marker/tcr.md
@@ -0,0 +1,18 @@
+# TCRαβ
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## iNKT cell
+
+> "Expression of T Cell Receptor (TCR)-αβ enables NKT cells to recognize antigenic lipids presented by CD1d"
+
+— Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473; PMCID:PMC9202826) · `EV00158` · verified: yes
+
+> "T2NKT cells were identified as CD3+ CD56+ CD161+ TCR-γδ- TCRVα7.2- and TCRVα24- cells."
+
+— Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473; PMCID:PMC9202826) · `EV00159` · verified: no
+
+> "we identified a CD3+ CD56+ CD161+ TCR-Vα24- TCR-γδ- TCR-Vα7.2- living T2NKT cell population."
+
+— Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473; PMCID:PMC9202826) · `EV00160` · verified: no
diff --git a/literature/by_marker/tcrv-24-j-18.md b/literature/by_marker/tcrv-24-j-18.md
new file mode 100644
index 0000000..54cc5b1
--- /dev/null
+++ b/literature/by_marker/tcrv-24-j-18.md
@@ -0,0 +1,18 @@
+# TCRVα24-Jα18
+
+Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.
+Do not edit by hand.
+
+## iNKT cell
+
+> "iNKT cells possess an invariant TCR Vα24-Jα18α chain paired with TCR Vβ11, which mainly responds to α-galactosylceramide glycopeptide (αGalCer)."
+
+— Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473; PMCID:PMC9202826) · `EV00161` · verified: yes
+
+> "iNKT cells, can be identified in humans through expression of their invariant alpha (Vα24) and beta (Vβ11) TCR segments"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00162` · verified: not_checked
+
+> "Vα24 TCR FITC C15 iNKT cell lineage"
+
+— Lal et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357) · `EV00163` · verified: not_checked
diff --git a/literature/evidence.tsv b/literature/evidence.tsv
new file mode 100644
index 0000000..ee29db6
--- /dev/null
+++ b/literature/evidence.tsv
@@ -0,0 +1,262 @@
+evidence_id	subject_id	candidate_subject_ids	candidate_status	cell_type_label	marker_token	level	supports_or_contradicts	quote	pmid	doi	pmcid	first_author_year	species	tissue	source_type	source_type_basis	source_file	source_line	section	notes	verified	verification_note	superseded_by	added_on
+EV00001		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD19		supports	"""Mature B cells typically express both CD19 and CD20."""	22654880	10.3389/fimmu.2012.00122	PMC3360193	Griffin & Rothstein 2012			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 22654880)	archive/2026-09_literature_narratives/b_cell_markers.md	21	CD19 and CD20 (required positive — pan-B cell markers)		yes	exact match in Europe PMC full text		2026-09-28
+EV00002		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD20		supports	"""Mature B cells typically express both CD19 and CD20."""	22654880	10.3389/fimmu.2012.00122	PMC3360193	Griffin & Rothstein 2012			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 22654880)	archive/2026-09_literature_narratives/b_cell_markers.md	21	CD19 and CD20 (required positive — pan-B cell markers)		yes	exact match in Europe PMC full text		2026-09-28
+EV00003		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD19		supports	"""as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired"""	22654880	10.3389/fimmu.2012.00122	PMC3360193	Griffin & Rothstein 2012			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 22654880)	archive/2026-09_literature_narratives/b_cell_markers.md	24	CD19 and CD20 (required positive — pan-B cell markers)		yes	exact match in Europe PMC full text		2026-09-28
+EV00004		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD20		supports	"""as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired"""	22654880	10.3389/fimmu.2012.00122	PMC3360193	Griffin & Rothstein 2012			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 22654880)	archive/2026-09_literature_narratives/b_cell_markers.md	24	CD19 and CD20 (required positive — pan-B cell markers)		yes	exact match in Europe PMC full text		2026-09-28
+EV00005		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD19		supports	"""CD19+ B cells were then enriched to >98% using CD19 microbead magnetic separation"""	27994589	10.3389/fimmu.2016.00546	PMC5133252	Martin et al. 2016			review	proposed; PubMed publication type: Journal Article (PMID 27994589)	archive/2026-09_literature_narratives/b_cell_markers.md	28	CD19 and CD20 (required positive — pan-B cell markers)		yes	exact match in Europe PMC full text		2026-09-28
+EV00006		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD19		supports	"""to positively select intact cells (Ir191+Ir193+), to positively select live cells (Rh103−Ir191+Ir193+), and to identify CD19+ and/or CD20+ B cells"""	27994589	10.3389/fimmu.2016.00546	PMC5133252	Martin et al. 2016			review	proposed; PubMed publication type: Journal Article (PMID 27994589)	archive/2026-09_literature_narratives/b_cell_markers.md	31	CD19 and CD20 (required positive — pan-B cell markers)		no	not found in Europe PMC full text: to positively select intact cells (Ir191+Ir193+), to positively select live cells (Rh103−Ir191+Ir193+), and to identify CD19+ and/or CD20+ B cells [first 93 of 146 chars match; then: '1+Ir193+), and to identify CD1']		2026-09-28
+EV00007		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD20		supports	"""to positively select intact cells (Ir191+Ir193+), to positively select live cells (Rh103−Ir191+Ir193+), and to identify CD19+ and/or CD20+ B cells"""	27994589	10.3389/fimmu.2016.00546	PMC5133252	Martin et al. 2016			review	proposed; PubMed publication type: Journal Article (PMID 27994589)	archive/2026-09_literature_narratives/b_cell_markers.md	31	CD19 and CD20 (required positive — pan-B cell markers)		no	not found in Europe PMC full text: to positively select intact cells (Ir191+Ir193+), to positively select live cells (Rh103−Ir191+Ir193+), and to identify CD19+ and/or CD20+ B cells [first 93 of 146 chars match; then: '1+Ir193+), and to identify CD1']		2026-09-28
+EV00008		SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD27		supports	"""transitional (IgD+CD27−CD10+), and naïve (IgD+CD27−CD10−)"""	27994589	10.3389/fimmu.2016.00546	PMC5133252	Martin et al. 2016			review	proposed; PubMed publication type: Journal Article (PMID 27994589)	archive/2026-09_literature_narratives/b_cell_markers.md	45	CD27 (memory vs naive distinguisher — positive on memory B cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00009		SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD27		supports	"""**M**: CD19+ CD27+ CD38−/lo"" [memory B cell gating entry] and ""**N**: CD19+ CD27− CD38− CD24− IgD+"""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	48	CD27 (memory vs naive distinguisher — positive on memory B cells)	naive B cell gating entry, Table 1	not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00010		SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD27		supports	"""Double negative (DN) B cells, also known as atypical memory B cells, constitute a B cell population that lacks expression of immunoglobulin D and CD27 memory marker."""	34964023	10.31138/mjr.32.3.192	PMC8693305	Sachinidis & Garyfallos 2021			review	pubmed_publication_type: Journal Article|Review (PMID 34964023)	archive/2026-09_literature_narratives/b_cell_markers.md	52	CD27 (memory vs naive distinguisher — positive on memory B cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00011		SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD38		supports	"""T1 (CD38+++CD24hiCD10++IgDlo/−), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)"""	27994589	10.3389/fimmu.2016.00546	PMC5133252	Martin et al. 2016			review	proposed; PubMed publication type: Journal Article (PMID 27994589)	archive/2026-09_literature_narratives/b_cell_markers.md	65	CD38 (differentiation marker — high on transitional B cells and antibody-secreting cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00012		SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD38		supports	"""Co-expression of high levels of CD24 and CD38 have also frequently been used to identify them, and it is important that CD27 be included if this is the case"""	27994589	10.3389/fimmu.2016.00546	PMC5133252	Martin et al. 2016			review	proposed; PubMed publication type: Journal Article (PMID 27994589)	archive/2026-09_literature_narratives/b_cell_markers.md	69	CD38 (differentiation marker — high on transitional B cells and antibody-secreting cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00013		SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD38		supports	"""**ASC**: CD19+ CD27+ CD38hi"" and ""**M**: CD19+ CD27+ CD38−/lo"" and ""**Tr**: CD19+ CD27− CD38int CD24+"""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	74	CD38 (differentiation marker — high on transitional B cells and antibody-secreting cells)	gating table entries, Table 1	not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00014		SOULCAP:SC000028|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036	unreviewed	B cell	CD10		supports	"""These cells express IgD and CD10 alongside the IgM BCR so can be identified as IgD+ CD27−CD10hi/+"""	27994589	10.3389/fimmu.2016.00546	PMC5133252	Martin et al. 2016			review	proposed; PubMed publication type: Journal Article (PMID 27994589)	archive/2026-09_literature_narratives/b_cell_markers.md	87	CD10 (transitional B cell marker — high on T1/T2; low on T3; negative on mature)		yes	exact match in Europe PMC full text		2026-09-28
+EV00015		SOULCAP:SC000028|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036	unreviewed	B cell	CD10		supports	"""T1 (CD38+++CD24hiCD10++IgDlo/−), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)"""	27994589	10.3389/fimmu.2016.00546	PMC5133252	Martin et al. 2016			review	proposed; PubMed publication type: Journal Article (PMID 27994589)	archive/2026-09_literature_narratives/b_cell_markers.md	91	CD10 (transitional B cell marker — high on T1/T2; low on T3; negative on mature)		yes	exact match in Europe PMC full text		2026-09-28
+EV00016		SOULCAP:SC000028|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036	unreviewed	B cell	CD10		supports	"""transitional (IgD+CD27−CD10+), and naïve (IgD+CD27−CD10−)"""	27994589	10.3389/fimmu.2016.00546	PMC5133252	Martin et al. 2016			review	proposed; PubMed publication type: Journal Article (PMID 27994589)	archive/2026-09_literature_narratives/b_cell_markers.md	95	CD10 (transitional B cell marker — high on T1/T2; low on T3; negative on mature)		yes	exact match in Europe PMC full text		2026-09-28
+EV00017		SOULCAP:SC000028|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036	unreviewed	B cell	CD10		supports	"""CD21lo Tr cells expressed higher levels of markers of the early transitional compartment (IgM, CD24, CD10), but less CD21 and CXCR5"""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	98	CD10 (transitional B cell marker — high on T1/T2; low on T3; negative on mature)		not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00018		SOULCAP:SC000028|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036	unreviewed	B cell	CD24		supports	"""Co-expression of high levels of CD24 and CD38 have also frequently been used to identify them, and it is important that CD27 be included if this is the case"""	27994589	10.3389/fimmu.2016.00546	PMC5133252	Martin et al. 2016			review	proposed; PubMed publication type: Journal Article (PMID 27994589)	archive/2026-09_literature_narratives/b_cell_markers.md	111	CD24 (differentiation marker — high on transitional; low on naive; negative on DN B cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00019		SOULCAP:SC000028|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036	unreviewed	B cell	CD24		supports	"""**Tr**: CD19+ CD27− CD38int CD24+"" [transitional B cell gating entry, Table 1] and ""**N**: CD19+ CD27− CD38− CD24− IgD+"" [naive B cell gating entry] and ""**DN**: CD19+ CD27− CD38− CD24− IgD−"""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	116	CD24 (differentiation marker — high on transitional; low on naive; negative on DN B cells)	double-negative B cell gating entry	not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00020		SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	IgD		supports	"""naïve B cells express immunoglobulin (Ig)D and IgM and undergo isotype switching to produce IgM, IgA, IgG, or IgE exclusively"""	35393268	10.1016/j.it.2022.03.005	PMC8977948	McGrath, Li & Wilson 2022			review	pubmed_publication_type: Journal Article|Review|Research Support, N.I.H., Extramural (PMID 35393268)	archive/2026-09_literature_narratives/b_cell_markers.md	130	IgD (class-switch indicator — positive on naive; negative on class-switched memory)		yes	exact match in Europe PMC full text		2026-09-28
+EV00021		SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	IgD		supports	"""**N**: CD19+ CD27− CD38− CD24− IgD+"""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	134	IgD (class-switch indicator — positive on naive; negative on class-switched memory)	naive B cell gating entry, Table 1	not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00022		SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	IgD		supports	"""**usM**: IgM+ IgD+"" [unswitched memory] / ""**mM**: IgM+ IgD−"" [IgM-only memory] / ""**sM**: IgM− IgD−"""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	137	IgD (class-switch indicator — positive on naive; negative on class-switched memory)	switched memory] [gating table entries, Table 1	not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00023		SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	IgD		supports	"""Double negative (DN) B cells, also known as atypical memory B cells, constitute a B cell population that lacks expression of immunoglobulin D and CD27 memory marker."""	34964023	10.31138/mjr.32.3.192	PMC8693305	Sachinidis & Garyfallos 2021			review	pubmed_publication_type: Journal Article|Review (PMID 34964023)	archive/2026-09_literature_narratives/b_cell_markers.md	141	IgD (class-switch indicator — positive on naive; negative on class-switched memory)		yes	exact match in Europe PMC full text		2026-09-28
+EV00024		SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	IgD		supports	"""T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)"""	27994589	10.3389/fimmu.2016.00546	PMC5133252	Martin et al. 2016			review	proposed; PubMed publication type: Journal Article (PMID 27994589)	archive/2026-09_literature_narratives/b_cell_markers.md	145	IgD (class-switch indicator — positive on naive; negative on class-switched memory)		yes	exact match in Europe PMC full text		2026-09-28
+EV00025		SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	IgM		supports	"""naïve B cells express immunoglobulin (Ig)D and IgM and undergo isotype switching to produce IgM, IgA, IgG, or IgE exclusively"""	35393268	10.1016/j.it.2022.03.005	PMC8977948	McGrath, Li & Wilson 2022			review	pubmed_publication_type: Journal Article|Review|Research Support, N.I.H., Extramural (PMID 35393268)	archive/2026-09_literature_narratives/b_cell_markers.md	159	IgM, IgG, IgA, IgE (class-switch subtype markers on switched memory B cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00026		SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	IgG		supports	"""naïve B cells express immunoglobulin (Ig)D and IgM and undergo isotype switching to produce IgM, IgA, IgG, or IgE exclusively"""	35393268	10.1016/j.it.2022.03.005	PMC8977948	McGrath, Li & Wilson 2022			review	pubmed_publication_type: Journal Article|Review|Research Support, N.I.H., Extramural (PMID 35393268)	archive/2026-09_literature_narratives/b_cell_markers.md	159	IgM, IgG, IgA, IgE (class-switch subtype markers on switched memory B cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00027		SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	IgA		supports	"""naïve B cells express immunoglobulin (Ig)D and IgM and undergo isotype switching to produce IgM, IgA, IgG, or IgE exclusively"""	35393268	10.1016/j.it.2022.03.005	PMC8977948	McGrath, Li & Wilson 2022			review	pubmed_publication_type: Journal Article|Review|Research Support, N.I.H., Extramural (PMID 35393268)	archive/2026-09_literature_narratives/b_cell_markers.md	159	IgM, IgG, IgA, IgE (class-switch subtype markers on switched memory B cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00028		SOULCAP:SC000033|SOULCAP:SC000036|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	IgE		supports	"""naïve B cells express immunoglobulin (Ig)D and IgM and undergo isotype switching to produce IgM, IgA, IgG, or IgE exclusively"""	35393268	10.1016/j.it.2022.03.005	PMC8977948	McGrath, Li & Wilson 2022			review	pubmed_publication_type: Journal Article|Review|Research Support, N.I.H., Extramural (PMID 35393268)	archive/2026-09_literature_narratives/b_cell_markers.md	159	IgM, IgG, IgA, IgE (class-switch subtype markers on switched memory B cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00029		SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	IgG		supports	"""CD73+ MBCs are also proportionally more isotype-switched than CD73– MBCs, allowing them to produce IgG and IgA antibodies to facilitate a more diverse set of effector functions"""	35393268	10.1016/j.it.2022.03.005	PMC8977948	McGrath, Li & Wilson 2022			review	pubmed_publication_type: Journal Article|Review|Research Support, N.I.H., Extramural (PMID 35393268)	archive/2026-09_literature_narratives/b_cell_markers.md	163	IgM, IgG, IgA, IgE (class-switch subtype markers on switched memory B cells)		no	not found in Europe PMC full text: CD73+ MBCs are also proportionally more isotype-switched than CD73– MBCs, allowing them to produce IgG and IgA antibodies to facilitate a more diverse set of effector functions [first 72 of 176 chars match; then: ', allowing them to produce IgG']		2026-09-28
+EV00030		SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	IgA		supports	"""CD73+ MBCs are also proportionally more isotype-switched than CD73– MBCs, allowing them to produce IgG and IgA antibodies to facilitate a more diverse set of effector functions"""	35393268	10.1016/j.it.2022.03.005	PMC8977948	McGrath, Li & Wilson 2022			review	pubmed_publication_type: Journal Article|Review|Research Support, N.I.H., Extramural (PMID 35393268)	archive/2026-09_literature_narratives/b_cell_markers.md	163	IgM, IgG, IgA, IgE (class-switch subtype markers on switched memory B cells)		no	not found in Europe PMC full text: CD73+ MBCs are also proportionally more isotype-switched than CD73– MBCs, allowing them to produce IgG and IgA antibodies to facilitate a more diverse set of effector functions [first 72 of 176 chars match; then: ', allowing them to produce IgG']		2026-09-28
+EV00031		SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	IgA		supports	"""cluster 4 was IgG1 (IGHG1) dominant with minimal contributions from other isotypes, cluster 7 was more balanced but with a slight bias towards IgA (IGHA1/IGHA2) overall"""	35393268	10.1016/j.it.2022.03.005	PMC8977948	McGrath, Li & Wilson 2022			review	pubmed_publication_type: Journal Article|Review|Research Support, N.I.H., Extramural (PMID 35393268)	archive/2026-09_literature_narratives/b_cell_markers.md	167	IgM, IgG, IgA, IgE (class-switch subtype markers on switched memory B cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00032		SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	IgM		supports	"""**usM**: IgM+ IgD+"" [unswitched memory] / ""**mM**: IgM+ IgD−"" [IgM-only memory] / ""**sM**: IgM− IgD−"""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	172	IgM, IgG, IgA, IgE (class-switch subtype markers on switched memory B cells)	switched memory, IgG/IgA/IgE positive by exclusion] [Table 1	not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00033		SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	IgM		supports	"""Consistent with the B cell antigen receptor-sequencing data, SARS-CoV-2-specific responsiveness was broad, with participation of IgM, IgA and IgG antibodies."""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	176	IgM, IgG, IgA, IgE (class-switch subtype markers on switched memory B cells)		not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00034		SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	IgG		supports	"""Consistent with the B cell antigen receptor-sequencing data, SARS-CoV-2-specific responsiveness was broad, with participation of IgM, IgA and IgG antibodies."""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	176	IgM, IgG, IgA, IgE (class-switch subtype markers on switched memory B cells)		not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00035		SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	IgA		supports	"""Consistent with the B cell antigen receptor-sequencing data, SARS-CoV-2-specific responsiveness was broad, with participation of IgM, IgA and IgG antibodies."""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	176	IgM, IgG, IgA, IgE (class-switch subtype markers on switched memory B cells)		not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00036			none_found	B cell	CD138		supports	"""as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired"""	22654880	10.3389/fimmu.2012.00122	PMC3360193	Griffin & Rothstein 2012			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 22654880)	archive/2026-09_literature_narratives/b_cell_markers.md	189	CD138 / Syndecan-1 (plasma cell marker — distinguishes PC from PB)		yes	exact match in Europe PMC full text		2026-09-28
+EV00037			none_found	B cell	CD138		supports	"""ASC responses in ICU-C patients were highly enriched in more mature CD138+ cells relative to both OUT-C and HDs."""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	193	CD138 / Syndecan-1 (plasma cell marker — distinguishes PC from PB)		not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00038			none_found	B cell	CD138		supports	"""**CD138neg ASC**: CD138−"" and ""**CD138pos ASC**: CD138+"""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	197	CD138 / Syndecan-1 (plasma cell marker — distinguishes PC from PB)	gating labels distinguishing plasmablasts from plasma cells within the CD19+CD27+CD38hi ASC gate	not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00039		SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036	unreviewed	B cell	CD21		supports	"""DN1: CD11c− CD21+"" / ""DN2: CD11c+ CD21−"" / ""DN3: CD11c− CD21−"""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	210	CD21 / Complement Receptor 2 (DN B cell subtype marker — positive on BDN1/BDN4, negative on BDN2/BDN3)	gating table	not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00040		SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036	unreviewed	B cell	CD21		supports	"""CD19+IgD−CD27−CD21+ CD11c− T-bet− CXCR5+"" [DN1 phenotype, Table 1] and ""CD19+IgD−CD27−CD21− CD11c+ T-bet+CXCR5−"" [DN2 phenotype] and ""CD19+IgD−CD27−CD21− CD11c−"""	34964023	10.31138/mjr.32.3.192	PMC8693305	Sachinidis & Garyfallos 2021			review	pubmed_publication_type: Journal Article|Review (PMID 34964023)	archive/2026-09_literature_narratives/b_cell_markers.md	213	CD21 / Complement Receptor 2 (DN B cell subtype marker — positive on BDN1/BDN4, negative on BDN2/BDN3)	DN3 phenotype	no	not found in Europe PMC full text: CD19+IgD−CD27−CD21+ CD11c− T-bet− CXCR5+ [first 19 of 40 chars match; then: ' CD11c− T-bet− CXCR5+'] | CD19+IgD−CD27−CD21− CD11c+ T-bet+CXCR5− [first 19 of 39 chars match; then: ' CD11c+ T-bet+CXCR5−'] | CD19+IgD−CD27−CD21− CD11c− [first 19 of 26 chars match; then: ' CD11c−']		2026-09-28
+EV00041		SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036	unreviewed	B cell	CD21		supports	"""The gradual loss of CD10, CD5, and IgM and the upregulation of CD22, CD44, CD21, and CD23 as cells progress from immature to transitional (TI to T2 to T3) to mature naïve cells"""	27994589	10.3389/fimmu.2016.00546	PMC5133252	Martin et al. 2016			review	proposed; PubMed publication type: Journal Article (PMID 27994589)	archive/2026-09_literature_narratives/b_cell_markers.md	218	CD21 / Complement Receptor 2 (DN B cell subtype marker — positive on BDN1/BDN4, negative on BDN2/BDN3)		no	near-match only (differs in case, dashes or quote characters): The gradual loss of CD10, CD5, and IgM and the upregulation of CD22, CD44, CD21, and CD23 as cells progress from immature to transitional (TI to T2 to T3) to mature naïve cells		2026-09-28
+EV00042		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD11c		supports	"""DN2 B cells are a unique double-negative population (IgD−CD27−) that displays extrafollicular characteristics, such as the lack of CXCR5 and CD62L expression."""	34964023	10.31138/mjr.32.3.192	PMC8693305	Sachinidis & Garyfallos 2021			review	pubmed_publication_type: Journal Article|Review (PMID 34964023)	archive/2026-09_literature_narratives/b_cell_markers.md	233	CD11c / ITGAX (DN B cell type 2 marker; also expressed on T-bet+ age-associated B cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00043		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD11c		supports	"""CD19+IgD−CD27−CD21− CD11c+ T-bet+CXCR5−"""	34964023	10.31138/mjr.32.3.192	PMC8693305	Sachinidis & Garyfallos 2021			review	pubmed_publication_type: Journal Article|Review (PMID 34964023)	archive/2026-09_literature_narratives/b_cell_markers.md	237	CD11c / ITGAX (DN B cell type 2 marker; also expressed on T-bet+ age-associated B cells)	DN2 phenotype, Table 1	no	not found in Europe PMC full text: CD19+IgD−CD27−CD21− CD11c+ T-bet+CXCR5− [first 19 of 39 chars match; then: ' CD11c+ T-bet+CXCR5−']		2026-09-28
+EV00044		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD11c		supports	"""DN1: CD11c− CD21+"" / ""DN2: CD11c+ CD21−"" / ""DN3: CD11c− CD21−"""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	240	CD11c / ITGAX (DN B cell type 2 marker; also expressed on T-bet+ age-associated B cells)	gating table	not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00045		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD11c		supports	"""six distinct circulating MBC phenotypes were found that were definable based on the combinatorial expression of CD27, CD73, CD95, CD19, CD11c, and the CD45 isoform CD45RB"""	35393268	10.1016/j.it.2022.03.005	PMC8977948	McGrath, Li & Wilson 2022			review	pubmed_publication_type: Journal Article|Review|Research Support, N.I.H., Extramural (PMID 35393268)	archive/2026-09_literature_narratives/b_cell_markers.md	243	CD11c / ITGAX (DN B cell type 2 marker; also expressed on T-bet+ age-associated B cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00046		SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036	unreviewed	B cell	CD185		supports	"""The CXCR5+ subgroup, now known as DN1, is the DN sub-population that expands in elderly healthy individuals, while the CXCR5- subgroup constitutes the extrafollicular DN2 subset."""	34964023	10.31138/mjr.32.3.192	PMC8693305	Sachinidis & Garyfallos 2021			review	pubmed_publication_type: Journal Article|Review (PMID 34964023)	archive/2026-09_literature_narratives/b_cell_markers.md	256	CD185 / CXCR5 (DN B cell type 1/4 marker; also marks follicular B cells)		no	not found in Europe PMC full text: The CXCR5+ subgroup, now known as DN1, is the DN sub-population that expands in elderly healthy individuals, while the CXCR5- subgroup constitutes the extrafollicular DN2 subset. [first 4 of 178 chars match; then: 'CXCR5+ subgroup, now known as ']		2026-09-28
+EV00047		SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036	unreviewed	B cell	CD185		supports	"""DN2 B cells are a unique double-negative population (IgD−CD27−) that displays extrafollicular characteristics, such as the lack of CXCR5 and CD62L expression."""	34964023	10.31138/mjr.32.3.192	PMC8693305	Sachinidis & Garyfallos 2021			review	pubmed_publication_type: Journal Article|Review (PMID 34964023)	archive/2026-09_literature_narratives/b_cell_markers.md	261	CD185 / CXCR5 (DN B cell type 1/4 marker; also marks follicular B cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00048		SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036	unreviewed	B cell	CD185		supports	"""CD19+IgD−CD27−CD21+ CD11c− T-bet− CXCR5+"""	34964023	10.31138/mjr.32.3.192	PMC8693305	Sachinidis & Garyfallos 2021			review	pubmed_publication_type: Journal Article|Review (PMID 34964023)	archive/2026-09_literature_narratives/b_cell_markers.md	265	CD185 / CXCR5 (DN B cell type 1/4 marker; also marks follicular B cells)	DN1 phenotype, Table 1	no	not found in Europe PMC full text: CD19+IgD−CD27−CD21+ CD11c− T-bet− CXCR5+ [first 19 of 40 chars match; then: ' CD11c− T-bet− CXCR5+']		2026-09-28
+EV00049		SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036	unreviewed	B cell	CD185		supports	"""CD21lo Tr cells expressed higher levels of markers of the early transitional compartment (IgM, CD24, CD10), but less CD21 and CXCR5"""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	268	CD185 / CXCR5 (DN B cell type 1/4 marker; also marks follicular B cells)		not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00050		SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036	unreviewed	B cell	CD185		supports	"""a decrease in follicular homing predisposition through CXCR5 and a corresponding increase in CXCR3"""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	272	CD185 / CXCR5 (DN B cell type 1/4 marker; also marks follicular B cells)	describing extrafollicular B cell responses in COVID-19 severity	not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00051		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD14		supports	"""B cells were enriched using negative selection of CD2, CD3, CD14, CD16, CD36, CD42b, CD56, CD66b and CD123."""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	287	CD14, CD3, CD56 (exclusion markers for B cell gate)		not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00052		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD3		supports	"""B cells were enriched using negative selection of CD2, CD3, CD14, CD16, CD36, CD42b, CD56, CD66b and CD123."""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	287	CD14, CD3, CD56 (exclusion markers for B cell gate)		not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00053		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD56		supports	"""B cells were enriched using negative selection of CD2, CD3, CD14, CD16, CD36, CD42b, CD56, CD66b and CD123."""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	287	CD14, CD3, CD56 (exclusion markers for B cell gate)		not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00054		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD14		supports	"""Cells were gated as CD3−CD14−CD16−CD19+CD38+CD27+ single live cells"""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	291	CD14, CD3, CD56 (exclusion markers for B cell gate)		not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00055		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD3		supports	"""Cells were gated as CD3−CD14−CD16−CD19+CD38+CD27+ single live cells"""	33028979	10.1038/s41590-020-00814-z		Woodruff et al. 2020			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't|Research Support, U.S. Gov't, P.H.S. (PMID 33028979)	archive/2026-09_literature_narratives/b_cell_markers.md	291	CD14, CD3, CD56 (exclusion markers for B cell gate)		not_checked	PMC7739702: full text not available; not checked		2026-09-28
+EV00056		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD14		supports	"""a population of enriched B cells (CD3−CD14−) was collected"""	27994589	10.3389/fimmu.2016.00546	PMC5133252	Martin et al. 2016			review	proposed; PubMed publication type: Journal Article (PMID 27994589)	archive/2026-09_literature_narratives/b_cell_markers.md	294	CD14, CD3, CD56 (exclusion markers for B cell gate)		yes	exact match in Europe PMC full text		2026-09-28
+EV00057		SOULCAP:SC000023|SOULCAP:SC000024|SOULCAP:SC000025|SOULCAP:SC000026|SOULCAP:SC000028|SOULCAP:SC000029|SOULCAP:SC000030|SOULCAP:SC000031|SOULCAP:SC000032|SOULCAP:SC000033|SOULCAP:SC000034|SOULCAP:SC000035|SOULCAP:SC000036|SOULCAP:SC000037|SOULCAP:SC000038|SOULCAP:SC000039|SOULCAP:SC000040|SOULCAP:SC000041|SOULCAP:SC000042|SOULCAP:SC000043|SOULCAP:SC000044	unreviewed	B cell	CD3		supports	"""a population of enriched B cells (CD3−CD14−) was collected"""	27994589	10.3389/fimmu.2016.00546	PMC5133252	Martin et al. 2016			review	proposed; PubMed publication type: Journal Article (PMID 27994589)	archive/2026-09_literature_narratives/b_cell_markers.md	294	CD14, CD3, CD56 (exclusion markers for B cell gate)		yes	exact match in Europe PMC full text		2026-09-28
+EV00058			none_found	dendritic cell	CD11c		supports	"""Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123−"""		10.3389/fimmu.2019.01088	PMC6532592	Rhodes JW et al. 2019			review	pubmed_publication_type: Journal Article|Research Support, Non-U.S. Gov't|Review (PMID 31156637)	archive/2026-09_literature_narratives/dc_markers.md	21	CD11c / ITGAX (required high on cDC; low on pDC)		yes	exact match in Europe PMC full text		2026-09-28
+EV00059			none_found	dendritic cell	CD11c		supports	"""pDCs are CD11c− CD123+ cells best characterized for their type I interferon"""		10.3389/fimmu.2019.01088	PMC6532592	Rhodes JW et al. 2019			review	pubmed_publication_type: Journal Article|Research Support, Non-U.S. Gov't|Review (PMID 31156637)	archive/2026-09_literature_narratives/dc_markers.md	25	CD11c / ITGAX (required high on cDC; low on pDC)		no	not found in Europe PMC full text: pDCs are CD11c− CD123+ cells best characterized for their type I interferon [first 9 of 75 chars match; then: 'CD11c− CD123+ cells best chara']		2026-09-28
+EV00060			none_found	dendritic cell	CD11c		supports	"""CD11c, a 'classical' cDC marker, can be downregulated on DCs"""	27637149	10.1016/j.immuni.2016.08.057	PMC5040826	Guilliams M et al. 2016			atlas	proposed; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 27637149)	archive/2026-09_literature_narratives/dc_markers.md	29	CD11c / ITGAX (required high on cDC; low on pDC)		no	near-match only (differs in case, dashes or quote characters): CD11c, a 'classical' cDC marker, can be downregulated on DCs		2026-09-28
+EV00061			none_found	dendritic cell	CD11c		supports	"""human pDCs (defined as CD45+CD11cloHLADRhi cells) were IRF8hiIRF4int across tissues"""	27637149	10.1016/j.immuni.2016.08.057	PMC5040826	Guilliams M et al. 2016			atlas	proposed; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 27637149)	archive/2026-09_literature_narratives/dc_markers.md	33	CD11c / ITGAX (required high on cDC; low on pDC)		no	not found in Europe PMC full text: human pDCs (defined as CD45+CD11cloHLADRhi cells) were IRF8hiIRF4int across tissues [first 11 of 83 chars match; then: '(defined as CD45+CD11cloHLADRh']		2026-09-28
+EV00062			none_found	dendritic cell	CD11c		supports	"""For DCs, we sampled LIN−HLA-DR+CD14− cells across the CD11C+ fraction (to enrich for CD141+ and CD1C+ cDCs) and the CD11C− fraction"""	28428369	10.1126/science.aah4573		Villani AC et al. 2017			atlas	proposed; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't (PMID 28428369)	archive/2026-09_literature_narratives/dc_markers.md	37	CD11c / ITGAX (required high on cDC; low on pDC)		not_checked	PMC5775029: full text not available; not checked		2026-09-28
+EV00063			none_found	dendritic cell	HLA-DR		supports	"""DCs were defined as live, LIN(CD3, CD19, CD56)−CD14−HLA-DR+ cells."""	28428369	10.1126/science.aah4573		Villani AC et al. 2017			atlas	proposed; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't (PMID 28428369)	archive/2026-09_literature_narratives/dc_markers.md	50	HLA-DR / MHC class II (required positive on all DC subsets)		not_checked	PMC5775029: full text not available; not checked		2026-09-28
+EV00064			none_found	dendritic cell	HLA-DR		supports	"""Numerous studies have shown that human dendritic cells express high levels of major histocompatibility complex (MHC) class II (e.g., HLA-DR)"""	28428369	10.1126/science.aah4573		Villani AC et al. 2017			atlas	proposed; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't (PMID 28428369)	archive/2026-09_literature_narratives/dc_markers.md	54	HLA-DR / MHC class II (required positive on all DC subsets)		not_checked	PMC5775029: full text not available; not checked		2026-09-28
+EV00065			none_found	dendritic cell	HLA-DR		supports	"""human pDCs (defined as CD45+CD11cloHLADRhi cells)"""	27637149	10.1016/j.immuni.2016.08.057	PMC5040826	Guilliams M et al. 2016			atlas	proposed; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 27637149)	archive/2026-09_literature_narratives/dc_markers.md	59	HLA-DR / MHC class II (required positive on all DC subsets)		no	not found in Europe PMC full text: human pDCs (defined as CD45+CD11cloHLADRhi cells) [first 11 of 49 chars match; then: '(defined as CD45+CD11cloHLADRh']		2026-09-28
+EV00066		SOULCAP:SC000012|SOULCAP:SC000013	unreviewed	dendritic cell	CD1c		supports	"""DC2 and DC3 correspond to new subdivisions of the CD1C/BDCA-1+ cDC2"""	28428369	10.1126/science.aah4573		Villani AC et al. 2017			atlas	proposed; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't (PMID 28428369)	archive/2026-09_literature_narratives/dc_markers.md	73	CD1c / BDCA-1 (cDC2 positive; cDC1 negative)		not_checked	PMC5775029: full text not available; not checked		2026-09-28
+EV00067		SOULCAP:SC000012|SOULCAP:SC000013	unreviewed	dendritic cell	CD1c		supports	"""Although both cDC2 subsets can be characterized by CD1c expression, cDC2-A (CD32b+) are distinguished"""		10.3389/fimmu.2019.01088	PMC6532592	Rhodes JW et al. 2019			review	pubmed_publication_type: Journal Article|Research Support, Non-U.S. Gov't|Review (PMID 31156637)	archive/2026-09_literature_narratives/dc_markers.md	77	CD1c / BDCA-1 (cDC2 positive; cDC1 negative)		yes	exact match in Europe PMC full text		2026-09-28
+EV00068		SOULCAP:SC000012|SOULCAP:SC000013	unreviewed	dendritic cell	CD1c		supports	"""CD172ahiCD1chi cDC2s"""	27637149	10.1016/j.immuni.2016.08.057	PMC5040826	Guilliams M et al. 2016			atlas	proposed; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 27637149)	archive/2026-09_literature_narratives/dc_markers.md	82	CD1c / BDCA-1 (cDC2 positive; cDC1 negative)		yes	exact match in Europe PMC full text		2026-09-28
+EV00069		SOULCAP:SC000012|SOULCAP:SC000013	unreviewed	dendritic cell	CD1c		supports	"""In the blood, DC subtypes include CD11C+ conventional DCs (cDCs), consisting of either CD141+ or CD1C+ cells"""	28428369	10.1126/science.aah4573		Villani AC et al. 2017			atlas	proposed; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't (PMID 28428369)	archive/2026-09_literature_narratives/dc_markers.md	86	CD1c / BDCA-1 (cDC2 positive; cDC1 negative)		not_checked	PMC5775029: full text not available; not checked		2026-09-28
+EV00070		SOULCAP:SC000012|SOULCAP:SC000013	unreviewed	dendritic cell	CD141		supports	"""DC1 corresponds to the cross-presenting CD141/BDCA-3+ cDC1, which is best marked by CLEC9A"""	28428369	10.1126/science.aah4573		Villani AC et al. 2017			atlas	proposed; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't (PMID 28428369)	archive/2026-09_literature_narratives/dc_markers.md	98	CD141 / BDCA-3 / Thrombomodulin (cDC1 positive marker; lo/− on cDC2)		not_checked	PMC5775029: full text not available; not checked		2026-09-28
+EV00071		SOULCAP:SC000012|SOULCAP:SC000013	unreviewed	dendritic cell	CD141		supports	"""cDC1s can be best identified by expression of C-type lectin-like receptor (Clec)9A and cell adhesion molecule 1 (CADM1)...and also express high levels of CD141 and XCR1"""		10.3389/fimmu.2019.01088	PMC6532592	Rhodes JW et al. 2019			review	pubmed_publication_type: Journal Article|Research Support, Non-U.S. Gov't|Review (PMID 31156637)	archive/2026-09_literature_narratives/dc_markers.md	103	CD141 / BDCA-3 / Thrombomodulin (cDC1 positive marker; lo/− on cDC2)		no	not found in Europe PMC full text: cDC1s can be best identified by expression of C-type lectin-like receptor (Clec)9A and cell adhesion molecule 1 (CADM1) [first 10 of 119 chars match; then: 'be best identified by expressi']		2026-09-28
+EV00072		SOULCAP:SC000012|SOULCAP:SC000013	unreviewed	dendritic cell	CD172a		supports	"""using CADM1 or XCR1 in combination with CD172a to separate cDC1s from cDC2s"""	27637149	10.1016/j.immuni.2016.08.057	PMC5040826	Guilliams M et al. 2016			atlas	proposed; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 27637149)	archive/2026-09_literature_narratives/dc_markers.md	116	CD172a / SIRPα (ideal positive on cDC2; negative on cDC1)		yes	exact match in Europe PMC full text		2026-09-28
+EV00073		SOULCAP:SC000012|SOULCAP:SC000013	unreviewed	dendritic cell	CD172a		supports	"""CD172ahiCD1chi cDC2s"""	27637149	10.1016/j.immuni.2016.08.057	PMC5040826	Guilliams M et al. 2016			atlas	proposed; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 27637149)	archive/2026-09_literature_narratives/dc_markers.md	120	CD172a / SIRPα (ideal positive on cDC2; negative on cDC1)		yes	exact match in Europe PMC full text		2026-09-28
+EV00074		SOULCAP:SC000012|SOULCAP:SC000013|SOULCAP:SC000014	unreviewed	dendritic cell	FceR1a		supports	"""CD1C+ DCs (DC2 and DC3) expressed unique markers (e.g. CD1C, CLEC10A, FCER1A, FCGR2B, and CD1D"""	28428369	10.1126/science.aah4573		Villani AC et al. 2017			atlas	proposed; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't (PMID 28428369)	archive/2026-09_literature_narratives/dc_markers.md	143	FceR1a / FCER1A (ideal positive on cDC2; also on basophils — see CD193)		not_checked	PMC5775029: full text not available; not checked		2026-09-28
+EV00075		SOULCAP:SC000011|SOULCAP:SC000012|SOULCAP:SC000013|SOULCAP:SC000014	unreviewed	dendritic cell	CD123		supports	"""Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123−"""		10.3389/fimmu.2019.01088	PMC6532592	Rhodes JW et al. 2019			review	pubmed_publication_type: Journal Article|Research Support, Non-U.S. Gov't|Review (PMID 31156637)	archive/2026-09_literature_narratives/dc_markers.md	162	CD123 / IL-3Rα (high on pDC; low/negative on cDC)		yes	exact match in Europe PMC full text		2026-09-28
+EV00076		SOULCAP:SC000011|SOULCAP:SC000012|SOULCAP:SC000013|SOULCAP:SC000014	unreviewed	dendritic cell	CD123		supports	"""pDCs are CD11c− CD123+ cells best characterized for their type I interferon"""		10.3389/fimmu.2019.01088	PMC6532592	Rhodes JW et al. 2019			review	pubmed_publication_type: Journal Article|Research Support, Non-U.S. Gov't|Review (PMID 31156637)	archive/2026-09_literature_narratives/dc_markers.md	166	CD123 / IL-3Rα (high on pDC; low/negative on cDC)		no	not found in Europe PMC full text: pDCs are CD11c− CD123+ cells best characterized for their type I interferon [first 9 of 75 chars match; then: 'CD11c− CD123+ cells best chara']		2026-09-28
+EV00077		SOULCAP:SC000011|SOULCAP:SC000012|SOULCAP:SC000013|SOULCAP:SC000014	unreviewed	dendritic cell	CD123		supports	"""Traditionally defined as CD123+ BDCA-2+ cells, pDCs have also been redefined by single-cell RNA sequencing"""		10.3389/fimmu.2019.01088	PMC6532592	Rhodes JW et al. 2019			review	pubmed_publication_type: Journal Article|Research Support, Non-U.S. Gov't|Review (PMID 31156637)	archive/2026-09_literature_narratives/dc_markers.md	170	CD123 / IL-3Rα (high on pDC; low/negative on cDC)		yes	exact match in Europe PMC full text		2026-09-28
+EV00078		SOULCAP:SC000011|SOULCAP:SC000012|SOULCAP:SC000013|SOULCAP:SC000014	unreviewed	dendritic cell	CD123		supports	"""plasmacytoid DCs (pDCs), consisting of CD123+ cells"""	28428369	10.1126/science.aah4573		Villani AC et al. 2017			atlas	proposed; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't (PMID 28428369)	archive/2026-09_literature_narratives/dc_markers.md	175	CD123 / IL-3Rα (high on pDC; low/negative on cDC)		not_checked	PMC5775029: full text not available; not checked		2026-09-28
+EV00079		SOULCAP:SC000011|SOULCAP:SC000012|SOULCAP:SC000013|SOULCAP:SC000014	unreviewed	dendritic cell	CD303		supports	"""pDCs (e.g. IL3RA/CD123, CLEC4C/CD303)"""	28428369	10.1126/science.aah4573		Villani AC et al. 2017			atlas	proposed; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't (PMID 28428369)	archive/2026-09_literature_narratives/dc_markers.md	187	CD303 / BDCA-2 / CLEC4C (pDC marker)		not_checked	PMC5775029: full text not available; not checked		2026-09-28
+EV00080		SOULCAP:SC000011|SOULCAP:SC000012|SOULCAP:SC000013|SOULCAP:SC000014	unreviewed	dendritic cell	CD303		supports	"""Traditionally defined as CD123+ BDCA-2+ cells, pDCs"""		10.3389/fimmu.2019.01088	PMC6532592	Rhodes JW et al. 2019			review	pubmed_publication_type: Journal Article|Research Support, Non-U.S. Gov't|Review (PMID 31156637)	archive/2026-09_literature_narratives/dc_markers.md	191	CD303 / BDCA-2 / CLEC4C (pDC marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00081		SOULCAP:SC000011|SOULCAP:SC000012|SOULCAP:SC000013|SOULCAP:SC000014	unreviewed	dendritic cell	CD303		supports	"""CD123hiCD303hi (human) pDCs"""	27637149	10.1016/j.immuni.2016.08.057	PMC5040826	Guilliams M et al. 2016			atlas	proposed; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 27637149)	archive/2026-09_literature_narratives/dc_markers.md	195	CD303 / BDCA-2 / CLEC4C (pDC marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00082		SOULCAP:SC000011|SOULCAP:SC000012|SOULCAP:SC000013	unreviewed	dendritic cell	CD64		supports	"""In human and macaque, CD64 cannot be used, as cDCs also express some CD64."""	27637149	10.1016/j.immuni.2016.08.057	PMC5040826	Guilliams M et al. 2016			atlas	proposed; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 27637149)	archive/2026-09_literature_narratives/dc_markers.md	234	CD64 / FcγRI / FCGR1A (optional positive for cDC; shared with macrophages)		exact_except_trailing_punctuation	exact apart from trailing punctuation (the paper likely has a reference marker or different ending there): In human and macaque, CD64 cannot be used, as cDCs also express some CD64.		2026-09-28
+EV00083		SOULCAP:SC000011|SOULCAP:SC000012|SOULCAP:SC000013	unreviewed	dendritic cell	CD64		supports	"""CD64 is highly expressed on Macs"""	27637149	10.1016/j.immuni.2016.08.057	PMC5040826	Guilliams M et al. 2016			atlas	proposed; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 27637149)	archive/2026-09_literature_narratives/dc_markers.md	238	CD64 / FcγRI / FCGR1A (optional positive for cDC; shared with macrophages)		yes	exact match in Europe PMC full text		2026-09-28
+EV00084		SOULCAP:SC000011|SOULCAP:SC000012|SOULCAP:SC000013|SOULCAP:SC000014	unreviewed	dendritic cell	CD14		supports	"""DCs were defined as live, LIN(CD3, CD19, CD56)−CD14−HLA-DR+ cells."""	28428369	10.1126/science.aah4573		Villani AC et al. 2017			atlas	proposed; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't (PMID 28428369)	archive/2026-09_literature_narratives/dc_markers.md	256	CD14 and CD16 (exclusion markers on cDC and pDC gates)		not_checked	PMC5775029: full text not available; not checked		2026-09-28
+EV00085		SOULCAP:SC000011|SOULCAP:SC000012|SOULCAP:SC000013|SOULCAP:SC000014	unreviewed	dendritic cell	CD14		supports	"""CD14loCD16lo in human and macaque"""	27637149	10.1016/j.immuni.2016.08.057	PMC5040826	Guilliams M et al. 2016			atlas	proposed; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 27637149)	archive/2026-09_literature_narratives/dc_markers.md	260	CD14 and CD16 (exclusion markers on cDC and pDC gates)		yes	exact match in Europe PMC full text		2026-09-28
+EV00086		SOULCAP:SC000011|SOULCAP:SC000012|SOULCAP:SC000013|SOULCAP:SC000014	unreviewed	dendritic cell	CD16		supports	"""The DC4 cluster mapped to the CD141−CD1C− population and was accurately delineated by FCGR3A/CD16."""	28428369	10.1126/science.aah4573		Villani AC et al. 2017			atlas	proposed; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't (PMID 28428369)	archive/2026-09_literature_narratives/dc_markers.md	269	CD14 and CD16 (exclusion markers on cDC and pDC gates)		not_checked	PMC5775029: full text not available; not checked		2026-09-28
+EV00087		SOULCAP:SC000011|SOULCAP:SC000012|SOULCAP:SC000013|SOULCAP:SC000014	unreviewed	dendritic cell	CD3		supports	"""DCs were defined as live, LIN(CD3, CD19, CD56)−CD14−HLA-DR+ cells."""	28428369	10.1126/science.aah4573		Villani AC et al. 2017			atlas	proposed; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, Non-U.S. Gov't (PMID 28428369)	archive/2026-09_literature_narratives/dc_markers.md	286	CD3 / CD19 / CD56 / CD127 (lineage exclusion panel)		not_checked	PMC5775029: full text not available; not checked		2026-09-28
+EV00088		SOULCAP:SC000054|SOULCAP:SC000055|SOULCAP:SC000056|SOULCAP:SC000057|SOULCAP:SC000058|SOULCAP:SC000061|SOULCAP:SC000070|SOULCAP:SC000071|SOULCAP:SC000072|SOULCAP:SC000073|SOULCAP:SC000122|SOULCAP:SC000123|SOULCAP:SC000124|SOULCAP:SC000125|SOULCAP:SC000126|SOULCAP:SC000127	unreviewed	gamma-delta T cell	CD3		supports	"""Cytobank 5.0 was used (following quality control and data scaling) to gate live/CD3+/γδ TCR+ cells."""	35193613	10.1186/s12979-022-00269-w	PMC8862246	Karunathilaka et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35193613)	archive/2026-09_literature_narratives/gdt_mait_markers.md	13	CD3 and TCRγδ (required — pan-γδ T cell markers)		no	not found in Europe PMC full text: Cytobank 5.0 was used (following quality control and data scaling) to gate live/CD3+/γδ TCR+ cells. [first 13 of 99 chars match; then: 'was used (following quality co']		2026-09-28
+EV00089		SOULCAP:SC000122	unreviewed	gamma-delta T cell	TCR Vδ2		supports	"""Vδ2 cells comprise 50–90% of γδ T cells in the circulation and are both effectors and antigen-presenting cells (APCs)."""	35193613	10.1186/s12979-022-00269-w	PMC8862246	Karunathilaka et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35193613)	archive/2026-09_literature_narratives/gdt_mait_markers.md	40	TCR Vδ2 / TRDV2 (major peripheral blood γδ subset marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00090		SOULCAP:SC000122	unreviewed	gamma-delta T cell	TCR Vδ2		supports	"""The most abundant T cell subtype in human peripheral blood is the Vδ2+ T cell."""	42344895	10.3389/fimmu.2026.1827307	PMC13286967	Wang et al. 2026			review	pubmed_publication_type: Journal Article|Review (PMID 42344895)	archive/2026-09_literature_narratives/gdt_mait_markers.md	43	TCR Vδ2 / TRDV2 (major peripheral blood γδ subset marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00091		SOULCAP:SC000122	unreviewed	gamma-delta T cell	TCR Vδ2		supports	"""It accounts for approximately 50% to 95% of total γδ T cells"""	42344895	10.3389/fimmu.2026.1827307	PMC13286967	Wang et al. 2026			review	pubmed_publication_type: Journal Article|Review (PMID 42344895)	archive/2026-09_literature_narratives/gdt_mait_markers.md	46	TCR Vδ2 / TRDV2 (major peripheral blood γδ subset marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00092		SOULCAP:SC000122	unreviewed	gamma-delta T cell	TCR Vδ2		supports	"""Vδ2+ T cells, represented by Vγ9Vδ2 T cells, the dominant circulating subset in humans"""	40746558	10.3389/fimmu.2025.1618393	PMC12310680	Laub et al. 2025			review	pubmed_publication_type: Journal Article|Review (PMID 40746558)	archive/2026-09_literature_narratives/gdt_mait_markers.md	49	TCR Vδ2 / TRDV2 (major peripheral blood γδ subset marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00093		SOULCAP:SC000122	unreviewed	gamma-delta T cell	TCR Vδ2		supports	"""Vδ1− cells are likely to be the predominant Vδ2+ in circulation"""	35193613	10.1186/s12979-022-00269-w	PMC8862246	Karunathilaka et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35193613)	archive/2026-09_literature_narratives/gdt_mait_markers.md	52	TCR Vδ2 / TRDV2 (major peripheral blood γδ subset marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00094		SOULCAP:SC000122	unreviewed	gamma-delta T cell	TCR Vγ9		supports	"""Most predominantly, it pairs with the Vγ9 chain forming a functional heterodimer, Therefore, this cell is also known as Vγ9Vδ2 T cell"""	42344895	10.3389/fimmu.2026.1827307	PMC13286967	Wang et al. 2026			review	pubmed_publication_type: Journal Article|Review (PMID 42344895)	archive/2026-09_literature_narratives/gdt_mait_markers.md	61	TCR Vγ9 / TRGV9 (paired with Vδ2 in the dominant peripheral blood subset)		yes	exact match in Europe PMC full text		2026-09-28
+EV00095		SOULCAP:SC000122	unreviewed	gamma-delta T cell	TCR Vγ9		supports	"""Vδ2+ γδ T cells, the dominant circulating subset in humans, are activated by non-peptidic phosphorylated intermediates of the mevalonate pathway."""	40746558	10.3389/fimmu.2025.1618393	PMC12310680	Laub et al. 2025			review	pubmed_publication_type: Journal Article|Review (PMID 40746558)	archive/2026-09_literature_narratives/gdt_mait_markers.md	64	TCR Vγ9 / TRGV9 (paired with Vδ2 in the dominant peripheral blood subset)		no	not found in Europe PMC full text: Vδ2+ γδ T cells, the dominant circulating subset in humans, are activated by non-peptidic phosphorylated intermediates of the mevalonate pathway. [first 17 of 145 chars match; then: 'the dominant circulating subse']		2026-09-28
+EV00096		SOULCAP:SC000123	unreviewed	gamma-delta T cell	TCR Vδ1		supports	"""Vδ1+ T cells are mainly found in the mucosal tissues (intestinal tissues) and epithelial tissues (such as skin)"""	42344895	10.3389/fimmu.2026.1827307	PMC13286967	Wang et al. 2026			review	pubmed_publication_type: Journal Article|Review (PMID 42344895)	archive/2026-09_literature_narratives/gdt_mait_markers.md	73	TCR Vδ1 / TRDV1 (tissue-resident subset; paired with various Vγ chains)		yes	exact match in Europe PMC full text		2026-09-28
+EV00097		SOULCAP:SC000123	unreviewed	gamma-delta T cell	TCR Vδ1		supports	"""Vδ1+ T cells are the primary tissue-resident γδ T cell subset"""	42344895	10.3389/fimmu.2026.1827307	PMC13286967	Wang et al. 2026			review	pubmed_publication_type: Journal Article|Review (PMID 42344895)	archive/2026-09_literature_narratives/gdt_mait_markers.md	76	TCR Vδ1 / TRDV1 (tissue-resident subset; paired with various Vγ chains)		no	not found in Europe PMC full text: Vδ1+ T cells are the primary tissue-resident γδ T cell subset [first 21 of 61 chars match; then: 'primary tissue-resident γδ T c']		2026-09-28
+EV00098		SOULCAP:SC000123	unreviewed	gamma-delta T cell	TCR Vδ1		supports	"""The Vδ1 chain can pair with multiple γ chains (e.g., Vγ2, Vγ3, Vγ4)"""	42344895	10.3389/fimmu.2026.1827307	PMC13286967	Wang et al. 2026			review	pubmed_publication_type: Journal Article|Review (PMID 42344895)	archive/2026-09_literature_narratives/gdt_mait_markers.md	79	TCR Vδ1 / TRDV1 (tissue-resident subset; paired with various Vγ chains)		yes	exact match in Europe PMC full text		2026-09-28
+EV00099		SOULCAP:SC000123	unreviewed	gamma-delta T cell	TCR Vδ1		supports	"""Vδ1+ cells maintain a predominant population of TEM/TEMRA γδ T cells"""	35193613	10.1186/s12979-022-00269-w	PMC8862246	Karunathilaka et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35193613)	archive/2026-09_literature_narratives/gdt_mait_markers.md	82	TCR Vδ1 / TRDV1 (tissue-resident subset; paired with various Vγ chains)		no	not found in Europe PMC full text: Vδ1+ cells maintain a predominant population of TEM/TEMRA γδ T cells [first 11 of 68 chars match; then: 'maintain a predominant populat']		2026-09-28
+EV00100		SOULCAP:SC000123	unreviewed	gamma-delta T cell	TCR Vδ1		supports	"""Vδ1+ and Vδ1− (as a percentage of γδ T cells) of 30.6% (± SD 27%) and 69.2% (± SD 27%) respectively."""	35193613	10.1186/s12979-022-00269-w	PMC8862246	Karunathilaka et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35193613)	archive/2026-09_literature_narratives/gdt_mait_markers.md	85	TCR Vδ1 / TRDV1 (tissue-resident subset; paired with various Vγ chains)		no	not found in Europe PMC full text: Vδ1+ and Vδ1− (as a percentage of γδ T cells) of 30.6% (± SD 27%) and 69.2% (± SD 27%) respectively. [first 49 of 100 chars match; then: '30.6% (± SD 27%) and 69.2% (± ']		2026-09-28
+EV00101			none_found	gamma-delta T cell	CD161		supports	"""γδ T cells were divided into two populations based on Vδ1 expression. Each population was subgated based on CD45RA and CD27 expression to differentiate naïve and memory cells and then gated based on CD161, CD4 and CD8 expression."""	35193613	10.1186/s12979-022-00269-w	PMC8862246	Karunathilaka et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35193613)	archive/2026-09_literature_narratives/gdt_mait_markers.md	94	CD161 (NKR-P1 / KLRB1 — used to define CD161+ γδ T cell subsets)		no	not found in Europe PMC full text: γδ T cells were divided into two populations based on Vδ1 expression. Each population was subgated based on CD45RA and CD27 expression to differentiate naïve and memory cells and then gated based on CD161, CD4 and CD8 expression. [first 217 of 229 chars match; then: ' expression.']		2026-09-28
+EV00102			none_found	gamma-delta T cell	CD161		supports	"""Comparison of CD161 expression between naïve and memory Vδ1+ and Vδ1− populations revealed a significant difference in both TEM cells and TCM cells (p < 0.0001), with Vδ1− cells having the highest surface expression of CD161."""	35193613	10.1186/s12979-022-00269-w	PMC8862246	Karunathilaka et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35193613)	archive/2026-09_literature_narratives/gdt_mait_markers.md	97	CD161 (NKR-P1 / KLRB1 — used to define CD161+ γδ T cell subsets)		no	not found in Europe PMC full text: Comparison of CD161 expression between naïve and memory Vδ1+ and Vδ1− populations revealed a significant difference in both TEM cells and TCM cells (p < 0.0001), with Vδ1− cells having the highest surface expression of CD161. [first 69 of 225 chars match; then: ' populations revealed a signif']		2026-09-28
+EV00103			none_found	gamma-delta T cell	CD161		supports	"""Both methods show CD161 as a primary differentiating phenotypic marker for Vδ cell subsets."""	35193613	10.1186/s12979-022-00269-w	PMC8862246	Karunathilaka et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35193613)	archive/2026-09_literature_narratives/gdt_mait_markers.md	100	CD161 (NKR-P1 / KLRB1 — used to define CD161+ γδ T cell subsets)		yes	exact match in Europe PMC full text		2026-09-28
+EV00104			none_found	gamma-delta T cell	CD161		supports	"""Overall, the pattern of marker expression on the eight clusters show that CD161 plays a central role in the differentiation of γδ T cell subtypes."""	35193613	10.1186/s12979-022-00269-w	PMC8862246	Karunathilaka et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35193613)	archive/2026-09_literature_narratives/gdt_mait_markers.md	103	CD161 (NKR-P1 / KLRB1 — used to define CD161+ γδ T cell subsets)		no	not found in Europe PMC full text: Overall, the pattern of marker expression on the eight clusters show that CD161 plays a central role in the differentiation of γδ T cell subtypes. [first 63 of 146 chars match; then: ' show that CD161 plays a centr']		2026-09-28
+EV00105			none_found	gamma-delta T cell	CD161		supports	"""CD161 expression on γδ T cells is associated with enhanced IFN-γ and IL-17 production and enhanced endothelial transmigration."""	35193613	10.1186/s12979-022-00269-w	PMC8862246	Karunathilaka et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35193613)	archive/2026-09_literature_narratives/gdt_mait_markers.md	106	CD161 (NKR-P1 / KLRB1 — used to define CD161+ γδ T cell subsets)		no	not found in Europe PMC full text: CD161 expression on γδ T cells is associated with enhanced IFN-γ and IL-17 production and enhanced endothelial transmigration. [first 75 of 126 chars match; then: 'production and enhanced endoth']		2026-09-28
+EV00106			none_found	gamma-delta T cell	CD161		supports	"""CD161 is a C-type lectin-like membrane receptor expressed at high levels on NK, NKT, Th17, Mucosa Associated Invariant T cells (MAITs), non-MAIT CD8+, tissue-resident memory cells (TRMs)."""	35193613	10.1186/s12979-022-00269-w	PMC8862246	Karunathilaka et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35193613)	archive/2026-09_literature_narratives/gdt_mait_markers.md	109	CD161 (NKR-P1 / KLRB1 — used to define CD161+ γδ T cell subsets)		exact_except_trailing_punctuation	exact apart from trailing punctuation (the paper likely has a reference marker or different ending there): CD161 is a C-type lectin-like membrane receptor expressed at high levels on NK, NKT, Th17, Mucosa Associated Invariant T cells (MAITs), non-MAIT CD8+, tissue-resident memory cells (TRMs).		2026-09-28
+EV00107		SOULCAP:SC000074	unreviewed	MAIT cell	CD3		supports	"""demonstrated the flow cytometry using CD3, CD4, CD8, TCRβ, MR1 tetramer"""	41804231	10.1111/cpr.70194	PMC13325667	Cai et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 41804231)	archive/2026-09_literature_narratives/gdt_mait_markers.md	123	CD3 and TCRαβ (required positive — MAIT cells are αβ T cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00108		SOULCAP:SC000074	unreviewed	MAIT cell	TCR Vα7.2		supports	"""the semi-invariant conserved MAIT TCR predominantly utilizes TRAV1-2 (Vα7.2 in humans)"""	40746558	10.3389/fimmu.2025.1618393	PMC12310680	Laub et al. 2025			review	pubmed_publication_type: Journal Article|Review (PMID 40746558)	archive/2026-09_literature_narratives/gdt_mait_markers.md	135	TCR Vα7.2 / TRAV1-2 (required — invariant α-chain of MAIT TCR)		yes	exact match in Europe PMC full text		2026-09-28
+EV00109		SOULCAP:SC000074	unreviewed	MAIT cell	TCR Vα7.2		supports	"""their semi-invariant TCR typically comprises a concrete TCRα chain (encoded by *TRAV1-2/TRAJ33* genes)"""	42433370	10.3389/fimmu.2026.1852383	PMC13349841	García-Escribano et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 42433370)	archive/2026-09_literature_narratives/gdt_mait_markers.md	138	TCR Vα7.2 / TRAV1-2 (required — invariant α-chain of MAIT TCR)		yes	exact match in Europe PMC full text		2026-09-28
+EV00110		SOULCAP:SC000074	unreviewed	MAIT cell	TCR Vα7.2		supports	"""In humans, the majority of MAIT cells are defined as CD8+CD161+Vα7.2+ T cells"""	42433370	10.3389/fimmu.2026.1852383	PMC13349841	García-Escribano et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 42433370)	archive/2026-09_literature_narratives/gdt_mait_markers.md	141	TCR Vα7.2 / TRAV1-2 (required — invariant α-chain of MAIT TCR)		yes	exact match in Europe PMC full text		2026-09-28
+EV00111		SOULCAP:SC000074	unreviewed	MAIT cell	TCR Vα7.2		supports	"""Circulating MAIT cells from healthy donors can be identified using surrogate set of markers TCRVα7.2+ CD161+ (and/or CD26+)."""	41511352	10.3390/cells15010069	PMC12785784	Azad et al. 2025			review	pubmed_publication_type: Journal Article|Review (PMID 41511352)	archive/2026-09_literature_narratives/gdt_mait_markers.md	144	TCR Vα7.2 / TRAV1-2 (required — invariant α-chain of MAIT TCR)		yes	exact match in Europe PMC full text		2026-09-28
+EV00112		SOULCAP:SC000074	unreviewed	MAIT cell	TCR Vα7.2		supports	"""Using TCR Vα7.2 and CD161, we identified MAIT cells in human liver tissues"""	41804231	10.1111/cpr.70194	PMC13325667	Cai et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 41804231)	archive/2026-09_literature_narratives/gdt_mait_markers.md	147	TCR Vα7.2 / TRAV1-2 (required — invariant α-chain of MAIT TCR)		yes	exact match in Europe PMC full text		2026-09-28
+EV00113		SOULCAP:SC000074	unreviewed	MAIT cell	CD161		supports	"""Human MAIT cells were gated as Zombie−CD14−CD19−CD8α+CD161+Vα7.2+ cells"""	42433370	10.3389/fimmu.2026.1852383	PMC13349841	García-Escribano et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 42433370)	archive/2026-09_literature_narratives/gdt_mait_markers.md	156	CD161 (required positive — pan-MAIT marker; co-expressed with Vα7.2)		yes	exact match in Europe PMC full text		2026-09-28
+EV00114		SOULCAP:SC000074	unreviewed	MAIT cell	CD161		supports	"""Gene transcriptomic analysis has identified MAIT cell-specific markers, including TRAV1-2+ TCR, CD161, PLZF, and IL-18Rα"""	40746558	10.3389/fimmu.2025.1618393	PMC12310680	Laub et al. 2025			review	pubmed_publication_type: Journal Article|Review (PMID 40746558)	archive/2026-09_literature_narratives/gdt_mait_markers.md	159	CD161 (required positive — pan-MAIT marker; co-expressed with Vα7.2)		yes	exact match in Europe PMC full text		2026-09-28
+EV00115		SOULCAP:SC000074	unreviewed	MAIT cell	CD161		supports	"""Surrogate markers, especially CD161 may lead to the inconsistent identification of MAIT cells, as CD161 can be downregulated in activation."""	41511352	10.3390/cells15010069	PMC12785784	Azad et al. 2025			review	pubmed_publication_type: Journal Article|Review (PMID 41511352)	archive/2026-09_literature_narratives/gdt_mait_markers.md	162	CD161 (required positive — pan-MAIT marker; co-expressed with Vα7.2)		exact_except_trailing_punctuation	exact apart from trailing punctuation (the paper likely has a reference marker or different ending there): Surrogate markers, especially CD161 may lead to the inconsistent identification of MAIT cells, as CD161 can be downregulated in activation.		2026-09-28
+EV00116		SOULCAP:SC000074	unreviewed	MAIT cell	CD161		supports	"""annotated cluster 2 into MAIT according to the high expression of KLRB1, SLC4A10, ZBTB16, RORA, and RORC"""	41804231	10.1111/cpr.70194	PMC13325667	Cai et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 41804231)	archive/2026-09_literature_narratives/gdt_mait_markers.md	165	CD161 (required positive — pan-MAIT marker; co-expressed with Vα7.2)		yes	exact match in Europe PMC full text		2026-09-28
+EV00117		SOULCAP:SC000074	unreviewed	MAIT cell	MR1 Tetramer		supports	"""The most specific method of identifying MAIT cells is by using MR1-5-OP-RU tetramers in flow cytometry."""	41511352	10.3390/cells15010069	PMC12785784	Azad et al. 2025			review	pubmed_publication_type: Journal Article|Review (PMID 41511352)	archive/2026-09_literature_narratives/gdt_mait_markers.md	174	MR1 Tetramer (alternative MAIT identification; more specific than Vα7.2 alone)		exact_except_trailing_punctuation	exact apart from trailing punctuation (the paper likely has a reference marker or different ending there): The most specific method of identifying MAIT cells is by using MR1-5-OP-RU tetramers in flow cytometry.		2026-09-28
+EV00118		SOULCAP:SC000074	unreviewed	MAIT cell	MR1 Tetramer		supports	"""MAIT cells were isolated from PBMCs using a 5-OP-RU-loaded PE-conjugated MR1 tetramer"""	42433370	10.3389/fimmu.2026.1852383	PMC13349841	García-Escribano et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 42433370)	archive/2026-09_literature_narratives/gdt_mait_markers.md	177	MR1 Tetramer (alternative MAIT identification; more specific than Vα7.2 alone)		yes	exact match in Europe PMC full text		2026-09-28
+EV00119		SOULCAP:SC000074	unreviewed	MAIT cell	MR1 Tetramer		supports	"""performed longitudinal monitoring of circulating MAIT cells using MR1‐tetramer staining"""	41804231	10.1111/cpr.70194	PMC13325667	Cai et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 41804231)	archive/2026-09_literature_narratives/gdt_mait_markers.md	180	MR1 Tetramer (alternative MAIT identification; more specific than Vα7.2 alone)		yes	exact match in Europe PMC full text		2026-09-28
+EV00120		SOULCAP:SC000074	unreviewed	MAIT cell	MR1 Tetramer		supports	"""The MAIT cell TCR recognizes a series of MR1-binding ligands which includes endogenous bile acids, drug molecules, folate, and riboflavin derivatives"""	41511352	10.3390/cells15010069	PMC12785784	Azad et al. 2025			review	pubmed_publication_type: Journal Article|Review (PMID 41511352)	archive/2026-09_literature_narratives/gdt_mait_markers.md	183	MR1 Tetramer (alternative MAIT identification; more specific than Vα7.2 alone)		yes	exact match in Europe PMC full text		2026-09-28
+EV00121		SOULCAP:SC000006|SOULCAP:SC000007|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD127		supports	"""total ILCs being defined as LIN− CD45+ CD127+"""	31586075	10.1038/s41598-019-50308-8	PMC6778123	Bonne-Année, Bush & Nutman 2019			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 31586075)	archive/2026-09_literature_narratives/ilc_markers.md	19	CD127 / IL-7Rα (required positive — pan-ILC marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00122		SOULCAP:SC000006|SOULCAP:SC000007|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD127		supports	"""By first gating on the total ILC population (defined as single cells that were CD45+ Lin-CD127+), these cells could then be divided into their respective ILC subsets"""	31586075	10.1038/s41598-019-50308-8	PMC6778123	Bonne-Année, Bush & Nutman 2019			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 31586075)	archive/2026-09_literature_narratives/ilc_markers.md	22	CD127 / IL-7Rα (required positive — pan-ILC marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00123		SOULCAP:SC000006|SOULCAP:SC000007|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD127		supports	"""CD45+Lin–CD3–CD161+CD127+ cells and are subdivided into 3 subsets, namely, group 1 ILCs (ILC1s) (CD117–CRTH2–), group 2 ILCs (ILC2s) (CRTH2+), and group 3 ILCs (ILC3s) (CD117+CRTH2–)."""	34363841	10.1016/j.jaci.2021.07.025	PMC9130781	Alkon et al 2022			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 34363841)	archive/2026-09_literature_narratives/ilc_markers.md	25	CD127 / IL-7Rα (required positive — pan-ILC marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00124		SOULCAP:SC000006|SOULCAP:SC000007|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD127		supports	"""characterized by the expression of the pan‐ILC markers CD127, CD161, and CD200R1"""	33300130	10.1002/eji.202048696	PMC8248192	Krabbendam et al 2021			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 33300130)	archive/2026-09_literature_narratives/ilc_markers.md	28	CD127 / IL-7Rα (required positive — pan-ILC marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00125		SOULCAP:SC000006|SOULCAP:SC000007|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD127		supports	"""The population positive for CD7, CD45, CD127 and CD161 and negative for LIN2 was separated and divided into CRTH2 positive/NKp46 negative and CRTH2 negative/NKp46 positive."""		10.3389/fimmu.2025.1568875	PMC12187685	Bento et al 2025			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 40568578)	archive/2026-09_literature_narratives/ilc_markers.md	31	CD127 / IL-7Rα (required positive — pan-ILC marker)		exact_except_trailing_punctuation	exact apart from trailing punctuation (the paper likely has a reference marker or different ending there): The population positive for CD7, CD45, CD127 and CD161 and negative for LIN2 was separated and divided into CRTH2 positive/NKp46 negative and CRTH2 negative/NKp46 positive.		2026-09-28
+EV00126		SOULCAP:SC000006|SOULCAP:SC000007|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD3		supports	"""We gated for lymphocytes, excluded doublets and dead cells and selected CD45+CD3− cells"""	33300130	10.1002/eji.202048696	PMC8248192	Krabbendam et al 2021			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 33300130)	archive/2026-09_literature_narratives/ilc_markers.md	40	CD3 (required exclusion — separates ILC from T cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00127		SOULCAP:SC000006|SOULCAP:SC000007|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD3		supports	"""CD45+Lin–CD3–CD161+CD127+ cells termed ILCs"""	34363841	10.1016/j.jaci.2021.07.025	PMC9130781	Alkon et al 2022			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 34363841)	archive/2026-09_literature_narratives/ilc_markers.md	43	CD3 (required exclusion — separates ILC from T cells)		no	not found in Europe PMC full text: CD45+Lin–CD3–CD161+CD127+ cells termed ILCs [first 32 of 43 chars match; then: 'termed ILCs']		2026-09-28
+EV00128		SOULCAP:SC000006|SOULCAP:SC000007|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD3		supports	"""CD3− cells were selected for lineage marker negative (Lin−) status using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes)"""	33300130	10.1002/eji.202048696	PMC8248192	Krabbendam et al 2021			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 33300130)	archive/2026-09_literature_narratives/ilc_markers.md	46	CD3 (required exclusion — separates ILC from T cells)		no	not found in Europe PMC full text: CD3− cells were selected for lineage marker negative (Lin−) status using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) [first 11 of 161 chars match; then: 'were selected for lineage mark']	EV00256	2026-09-28
+EV00129			none_found	innate lymphoid cell	CD161		supports	"""CD45+Lin–CD127+CD161+ cells (ie, bona fide ILCs)"""	34363841	10.1016/j.jaci.2021.07.025	PMC9130781	Alkon et al 2022			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 34363841)	archive/2026-09_literature_narratives/ilc_markers.md	55	CD161 (NKR-P1; common ILC co-marker)		no	not found in Europe PMC full text: CD45+Lin–CD127+CD161+ cells (ie, bona fide ILCs) [first 28 of 48 chars match; then: '(ie, bona fide ILCs)']	EV00257	2026-09-28
+EV00130			none_found	innate lymphoid cell	CD161		supports	"""Within the Lin−CD127+ population, conventional ILCs expressed CD161 but not CD94"""	33300130	10.1002/eji.202048696	PMC8248192	Krabbendam et al 2021			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 33300130)	archive/2026-09_literature_narratives/ilc_markers.md	58	CD161 (NKR-P1; common ILC co-marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00131			none_found	innate lymphoid cell	CD161		supports	"""CD161, which is known to be present on NK cells, NKT cells, and T cells, is also expressed by human ILCs."""	34363841	10.1016/j.jaci.2021.07.025	PMC9130781	Alkon et al 2022			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 34363841)	archive/2026-09_literature_narratives/ilc_markers.md	61	CD161 (NKR-P1; common ILC co-marker)		no	not found in Europe PMC full text: CD161, which is known to be present on NK cells, NKT cells, and T cells, is also expressed by human ILCs. [first 72 of 105 chars match; then: ' is also expressed by human IL']	EV00258	2026-09-28
+EV00132			none_found	innate lymphoid cell	CD161		supports	"""ILC1s were identified through the expression of CD7, CD45, CD127, CD161, absent/low NKp46 and absent LIN2, and CRTH2."""		10.3389/fimmu.2025.1568875	PMC12187685	Bento et al 2025			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 40568578)	archive/2026-09_literature_narratives/ilc_markers.md	64	CD161 (NKR-P1; common ILC co-marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00133		SOULCAP:SC000006|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD294		supports	"""group 2 ILCs (ILC2s) (CRTH2+), and group 3 ILCs (ILC3s) (CD117+CRTH2–)"""	34363841	10.1016/j.jaci.2021.07.025	PMC9130781	Alkon et al 2022			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 34363841)	archive/2026-09_literature_narratives/ilc_markers.md	75	CD294 / CRTH2 (required positive on ILC2; required negative on ILC1 and ILC3)		yes	exact match in Europe PMC full text		2026-09-28
+EV00134		SOULCAP:SC000006|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD294		supports	"""ILC2s as CRTH2+ CD117−/+"""	31586075	10.1038/s41598-019-50308-8	PMC6778123	Bonne-Année, Bush & Nutman 2019			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 31586075)	archive/2026-09_literature_narratives/ilc_markers.md	78	CD294 / CRTH2 (required positive on ILC2; required negative on ILC1 and ILC3)		yes	exact match in Europe PMC full text		2026-09-28
+EV00135		SOULCAP:SC000006|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD294		supports	"""ILC2 were identified through the positive expression of CD7, CD45, CD127, CD161, CRTH2, absent/low NKp46 and absent LIN2."""		10.3389/fimmu.2025.1568875	PMC12187685	Bento et al 2025			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 40568578)	archive/2026-09_literature_narratives/ilc_markers.md	81	CD294 / CRTH2 (required positive on ILC2; required negative on ILC1 and ILC3)		yes	exact match in Europe PMC full text		2026-09-28
+EV00136		SOULCAP:SC000006|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD294		supports	"""ILC3 were identified through the positive expression of CD7, CD45, CD127, CD161 and NKp46 and absence of CRTH2 and LIN2."""		10.3389/fimmu.2025.1568875	PMC12187685	Bento et al 2025			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 40568578)	archive/2026-09_literature_narratives/ilc_markers.md	84	CD294 / CRTH2 (required positive on ILC2; required negative on ILC1 and ILC3)		yes	exact match in Europe PMC full text		2026-09-28
+EV00137		SOULCAP:SC000006|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD294		supports	"""ILC1s as CD117− CRTH2−"""	31586075	10.1038/s41598-019-50308-8	PMC6778123	Bonne-Année, Bush & Nutman 2019			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 31586075)	archive/2026-09_literature_narratives/ilc_markers.md	87	CD294 / CRTH2 (required positive on ILC2; required negative on ILC1 and ILC3)		yes	exact match in Europe PMC full text		2026-09-28
+EV00138		SOULCAP:SC000006|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD117		supports	"""could be subdivided into CD117−NKp44− ILC1s and CD117‐expressing NKp44− ILC3s and NKp44+ ILC3s."""	33300130	10.1002/eji.202048696	PMC8248192	Krabbendam et al 2021			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 33300130)	archive/2026-09_literature_narratives/ilc_markers.md	96	CD117 / c-Kit (required positive on ILCp and ILC3; required negative on ILC1; low/negative on ILC2)		yes	exact match in Europe PMC full text		2026-09-28
+EV00139		SOULCAP:SC000006|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD117		supports	"""ILC1s as CD117− CRTH2−"" … ""ILC3s as CRTH2− CD117+"""	31586075	10.1038/s41598-019-50308-8	PMC6778123	Bonne-Année, Bush & Nutman 2019			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 31586075)	archive/2026-09_literature_narratives/ilc_markers.md	99	CD117 / c-Kit (required positive on ILCp and ILC3; required negative on ILC1; low/negative on ILC2)		yes	exact match in Europe PMC full text		2026-09-28
+EV00140		SOULCAP:SC000006|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD117		supports	"""ILC2s as CRTH2+ CD117−/+"""	31586075	10.1038/s41598-019-50308-8	PMC6778123	Bonne-Année, Bush & Nutman 2019			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 31586075)	archive/2026-09_literature_narratives/ilc_markers.md	102	CD117 / c-Kit (required positive on ILCp and ILC3; required negative on ILC1; low/negative on ILC2)		yes	exact match in Europe PMC full text		2026-09-28
+EV00141		SOULCAP:SC000006|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD117		supports	"""ILC3 subpopulations were evaluated in whole blood using the NKp44 (44.189) antibody to defined ILC3as as CRTH2− CD117+ NKp44− and ILC3bs as CRTH2− CD117+ NKp44+"""	31586075	10.1038/s41598-019-50308-8	PMC6778123	Bonne-Année, Bush & Nutman 2019			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 31586075)	archive/2026-09_literature_narratives/ilc_markers.md	105	CD117 / c-Kit (required positive on ILCp and ILC3; required negative on ILC1; low/negative on ILC2)		yes	exact match in Europe PMC full text		2026-09-28
+EV00142		SOULCAP:SC000006|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD117		supports	"""group 3 ILCs (ILC3s) (CD117+CRTH2–)"""	34363841	10.1016/j.jaci.2021.07.025	PMC9130781	Alkon et al 2022			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 34363841)	archive/2026-09_literature_narratives/ilc_markers.md	108	CD117 / c-Kit (required positive on ILCp and ILC3; required negative on ILC1; low/negative on ILC2)		yes	exact match in Europe PMC full text		2026-09-28
+EV00143		SOULCAP:SC000006|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD56		supports	"""(*) LIN2 is cocktail of the following antibodies: CD3-FITC (SK7), CD14-FITC (SJ25C1), CD19-FITC (L27), CD20-FITC (MφP9), and CD56-FITC (NCAM16.2)."""		10.3389/fimmu.2025.1568875	PMC12187685	Bento et al 2025			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 40568578)	archive/2026-09_literature_narratives/ilc_markers.md	119	CD56 / NCAM (ILCp required positive; ILC1/ILC2 required negative; ILC3 CD56+/-)		yes	exact match in Europe PMC full text		2026-09-28
+EV00144		SOULCAP:SC000006|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD56		supports	"Lineage markers include: ""CD3, CD4, CD8, CD14, CD16, CD19, CD56, CD11c, CD11b, FcεR1a"""	31586075	10.1038/s41598-019-50308-8	PMC6778123	Bonne-Année, Bush & Nutman 2019			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 31586075)	archive/2026-09_literature_narratives/ilc_markers.md	122	CD56 / NCAM (ILCp required positive; ILC1/ILC2 required negative; ILC3 CD56+/-)	Table 2	no	not found in Europe PMC full text: CD3, CD4, CD8, CD14, CD16, CD19, CD56, CD11c, CD11b, FcεR1a [first 3 of 59 chars match; then: ', CD4, CD8, CD14, CD16, CD19, ']		2026-09-28
+EV00145		SOULCAP:SC000006|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD56		supports	"""Similar to ILC3s, CD94+ ILCs partly expressed NKp44 and IL‐1R1, and also CD117, CD56, NKG2A"""	33300130	10.1002/eji.202048696	PMC8248192	Krabbendam et al 2021			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 33300130)	archive/2026-09_literature_narratives/ilc_markers.md	125	CD56 / NCAM (ILCp required positive; ILC1/ILC2 required negative; ILC3 CD56+/-)		yes	exact match in Europe PMC full text		2026-09-28
+EV00146		SOULCAP:SC000007|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD14		supports	"""Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) FcRεR1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors)."""	33300130	10.1002/eji.202048696	PMC8248192	Krabbendam et al 2021			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 33300130)	archive/2026-09_literature_narratives/ilc_markers.md	136	Lineage exclusion markers (CD14, CD33, CD64, CD34, CD19, CD15, CD66b, CD123)		yes	exact match in Europe PMC full text		2026-09-28
+EV00147		SOULCAP:SC000007|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD34		supports	"""Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) FcRεR1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors)."""	33300130	10.1002/eji.202048696	PMC8248192	Krabbendam et al 2021			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 33300130)	archive/2026-09_literature_narratives/ilc_markers.md	136	Lineage exclusion markers (CD14, CD33, CD64, CD34, CD19, CD15, CD66b, CD123)		yes	exact match in Europe PMC full text		2026-09-28
+EV00148		SOULCAP:SC000007|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD19		supports	"""Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) FcRεR1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors)."""	33300130	10.1002/eji.202048696	PMC8248192	Krabbendam et al 2021			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 33300130)	archive/2026-09_literature_narratives/ilc_markers.md	136	Lineage exclusion markers (CD14, CD33, CD64, CD34, CD19, CD15, CD66b, CD123)		yes	exact match in Europe PMC full text		2026-09-28
+EV00149		SOULCAP:SC000007|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD123		supports	"""Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) FcRεR1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors)."""	33300130	10.1002/eji.202048696	PMC8248192	Krabbendam et al 2021			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 33300130)	archive/2026-09_literature_narratives/ilc_markers.md	136	Lineage exclusion markers (CD14, CD33, CD64, CD34, CD19, CD15, CD66b, CD123)		yes	exact match in Europe PMC full text		2026-09-28
+EV00150		SOULCAP:SC000007|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD14		supports	"""lineage cocktail (TCRα/β, TCRγ/δ, CD19, CD16, CD15, CD14, CD94, CD11c, BDCA-2, FcεRIα, glycophorin A, CD41, CD1a, and CD34)"""	34363841	10.1016/j.jaci.2021.07.025	PMC9130781	Alkon et al 2022			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 34363841)	archive/2026-09_literature_narratives/ilc_markers.md	139	Lineage exclusion markers (CD14, CD33, CD64, CD34, CD19, CD15, CD66b, CD123)		yes	exact match in Europe PMC full text		2026-09-28
+EV00151		SOULCAP:SC000007|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD34		supports	"""lineage cocktail (TCRα/β, TCRγ/δ, CD19, CD16, CD15, CD14, CD94, CD11c, BDCA-2, FcεRIα, glycophorin A, CD41, CD1a, and CD34)"""	34363841	10.1016/j.jaci.2021.07.025	PMC9130781	Alkon et al 2022			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 34363841)	archive/2026-09_literature_narratives/ilc_markers.md	139	Lineage exclusion markers (CD14, CD33, CD64, CD34, CD19, CD15, CD66b, CD123)		yes	exact match in Europe PMC full text		2026-09-28
+EV00152		SOULCAP:SC000007|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD19		supports	"""lineage cocktail (TCRα/β, TCRγ/δ, CD19, CD16, CD15, CD14, CD94, CD11c, BDCA-2, FcεRIα, glycophorin A, CD41, CD1a, and CD34)"""	34363841	10.1016/j.jaci.2021.07.025	PMC9130781	Alkon et al 2022			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 34363841)	archive/2026-09_literature_narratives/ilc_markers.md	139	Lineage exclusion markers (CD14, CD33, CD64, CD34, CD19, CD15, CD66b, CD123)		yes	exact match in Europe PMC full text		2026-09-28
+EV00153		SOULCAP:SC000007|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD15		supports	"""lineage cocktail (TCRα/β, TCRγ/δ, CD19, CD16, CD15, CD14, CD94, CD11c, BDCA-2, FcεRIα, glycophorin A, CD41, CD1a, and CD34)"""	34363841	10.1016/j.jaci.2021.07.025	PMC9130781	Alkon et al 2022			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 34363841)	archive/2026-09_literature_narratives/ilc_markers.md	139	Lineage exclusion markers (CD14, CD33, CD64, CD34, CD19, CD15, CD66b, CD123)		yes	exact match in Europe PMC full text		2026-09-28
+EV00154		SOULCAP:SC000059	unreviewed	iNKT cell	CD3		supports	"""both identified as CD3+ and defined by their TCR specificities"""	29533501	10.1002/cyto.a.23357		Lal et al. 2018			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural (PMID 29533501)	archive/2026-09_literature_narratives/inkt_markers.md	17	CD3 (required positive — iNKT are T cells)		not_checked	PMC6059363: full text not available; not checked		2026-09-28
+EV00155		SOULCAP:SC000059	unreviewed	iNKT cell	CD3		supports	"""we defined iNKT cell subsets by the co-expression of TCR Vα24 and Vβ11 among CD3+ cells, and further through their expression of CD4 and CD161"""	29533501	10.1002/cyto.a.23357		Lal et al. 2018			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural (PMID 29533501)	archive/2026-09_literature_narratives/inkt_markers.md	20	CD3 (required positive — iNKT are T cells)		not_checked	PMC6059363: full text not available; not checked		2026-09-28
+EV00156		SOULCAP:SC000059	unreviewed	iNKT cell	CD3		supports	"""gating should include time, singlets, and scatter profile, followed by dead cell exclusion, CD14/CD19 dumping, and CD3 positivity"""	29533501	10.1002/cyto.a.23357		Lal et al. 2018			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural (PMID 29533501)	archive/2026-09_literature_narratives/inkt_markers.md	23	CD3 (required positive — iNKT are T cells)		not_checked	PMC6059363: full text not available; not checked		2026-09-28
+EV00157		SOULCAP:SC000059	unreviewed	iNKT cell	CD3		supports	"""the four CD3+ T cell subsets can be gated on, as CD8 and CD4 bulk T cells, MAIT cells, (CD161bright Vα7.2 TCR+), and iNKT cells (Vα24 TCR+ Vβ11 TCR+)"""	29533501	10.1002/cyto.a.23357		Lal et al. 2018			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural (PMID 29533501)	archive/2026-09_literature_narratives/inkt_markers.md	26	CD3 (required positive — iNKT are T cells)		not_checked	PMC6059363: full text not available; not checked		2026-09-28
+EV00158		SOULCAP:SC000059	unreviewed	iNKT cell	TCRαβ		supports	"""Expression of T Cell Receptor (TCR)-αβ enables NKT cells to recognize antigenic lipids presented by CD1d"""	35720369	10.3389/fimmu.2022.898473	PMC9202826	Zhou et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35720369)	archive/2026-09_literature_narratives/inkt_markers.md	35	TCRαβ (required positive; TCRγδ excluded)		yes	exact match in Europe PMC full text		2026-09-28
+EV00159		SOULCAP:SC000059	unreviewed	iNKT cell	TCRαβ		supports	"""T2NKT cells were identified as CD3+ CD56+ CD161+ TCR-γδ- TCRVα7.2- and TCRVα24- cells."""	35720369	10.3389/fimmu.2022.898473	PMC9202826	Zhou et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35720369)	archive/2026-09_literature_narratives/inkt_markers.md	40	TCRαβ (required positive; TCRγδ excluded)		no	not found in Europe PMC full text: T2NKT cells were identified as CD3+ CD56+ CD161+ TCR-γδ- TCRVα7.2- and TCRVα24- cells. [first 54 of 86 chars match; then: 'δ- TCRVα7.2- and TCRVα24- cell']		2026-09-28
+EV00160		SOULCAP:SC000059	unreviewed	iNKT cell	TCRαβ		supports	"""we identified a CD3+ CD56+ CD161+ TCR-Vα24- TCR-γδ- TCR-Vα7.2- living T2NKT cell population."""	35720369	10.3389/fimmu.2022.898473	PMC9202826	Zhou et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35720369)	archive/2026-09_literature_narratives/inkt_markers.md	43	TCRαβ (required positive; TCRγδ excluded)		no	not found in Europe PMC full text: we identified a CD3+ CD56+ CD161+ TCR-Vα24- TCR-γδ- TCR-Vα7.2- living T2NKT cell population. [first 49 of 92 chars match; then: 'δ- TCR-Vα7.2- living T2NKT cel']		2026-09-28
+EV00161		SOULCAP:SC000059	unreviewed	iNKT cell	TCRVα24-Jα18		supports	"""iNKT cells possess an invariant TCR Vα24-Jα18α chain paired with TCR Vβ11, which mainly responds to α-galactosylceramide glycopeptide (αGalCer)."""	35720369	10.3389/fimmu.2022.898473	PMC9202826	Zhou et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35720369)	archive/2026-09_literature_narratives/inkt_markers.md	52	TCRVα24-Jα18 (invariant α-chain — required; identifies iNKT vs vNKT)		yes	exact match in Europe PMC full text		2026-09-28
+EV00162		SOULCAP:SC000059	unreviewed	iNKT cell	TCRVα24-Jα18		supports	"""iNKT cells, can be identified in humans through expression of their invariant alpha (Vα24) and beta (Vβ11) TCR segments"""	29533501	10.1002/cyto.a.23357		Lal et al. 2018			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural (PMID 29533501)	archive/2026-09_literature_narratives/inkt_markers.md	55	TCRVα24-Jα18 (invariant α-chain — required; identifies iNKT vs vNKT)		not_checked	PMC6059363: full text not available; not checked		2026-09-28
+EV00163		SOULCAP:SC000059	unreviewed	iNKT cell	TCRVα24-Jα18		supports	"""Vα24 TCR FITC C15 iNKT cell lineage"""	29533501	10.1002/cyto.a.23357		Lal et al. 2018			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural (PMID 29533501)	archive/2026-09_literature_narratives/inkt_markers.md	60	TCRVα24-Jα18 (invariant α-chain — required; identifies iNKT vs vNKT)		not_checked	PMC6059363: full text not available; not checked		2026-09-28
+EV00164		SOULCAP:SC000059	unreviewed	iNKT cell	TCR Vβ11		supports	"""iNKT cells possess an invariant TCR Vα24-Jα18α chain paired with TCR Vβ11, which mainly responds to α-galactosylceramide glycopeptide (αGalCer)."""	35720369	10.3389/fimmu.2022.898473	PMC9202826	Zhou et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35720369)	archive/2026-09_literature_narratives/inkt_markers.md	73	TCR Vβ11 / TRBV25-1 (required positive — dominant β-chain in human iNKT)		yes	exact match in Europe PMC full text		2026-09-28
+EV00165		SOULCAP:SC000059	unreviewed	iNKT cell	TCR Vβ11		supports	"""iNKT cells, can be identified in humans through expression of their invariant alpha (Vα24) and beta (Vβ11) TCR segments"""	29533501	10.1002/cyto.a.23357		Lal et al. 2018			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural (PMID 29533501)	archive/2026-09_literature_narratives/inkt_markers.md	76	TCR Vβ11 / TRBV25-1 (required positive — dominant β-chain in human iNKT)		not_checked	PMC6059363: full text not available; not checked		2026-09-28
+EV00166		SOULCAP:SC000059	unreviewed	iNKT cell	TCR Vβ11		supports	"""we defined iNKT cell subsets by the co-expression of TCR Vα24 and Vβ11 among CD3+ cells, and further through their expression of CD4 and CD161"""	29533501	10.1002/cyto.a.23357		Lal et al. 2018			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural (PMID 29533501)	archive/2026-09_literature_narratives/inkt_markers.md	79	TCR Vβ11 / TRBV25-1 (required positive — dominant β-chain in human iNKT)		not_checked	PMC6059363: full text not available; not checked		2026-09-28
+EV00167		SOULCAP:SC000059	unreviewed	iNKT cell	TCR Vβ11		supports	"""Vβ11 TCR PE C21 iNKT cell lineage"""	29533501	10.1002/cyto.a.23357		Lal et al. 2018			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural (PMID 29533501)	archive/2026-09_literature_narratives/inkt_markers.md	84	TCR Vβ11 / TRBV25-1 (required positive — dominant β-chain in human iNKT)		not_checked	PMC6059363: full text not available; not checked		2026-09-28
+EV00168		SOULCAP:SC000059	unreviewed	iNKT cell	TCR Vβ11		supports	"""the Vα24+Vβ11+ gate encompasses the majority of CD1d pentamer+ cells (median=99%)"""	29533501	10.1002/cyto.a.23357		Lal et al. 2018			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural (PMID 29533501)	archive/2026-09_literature_narratives/inkt_markers.md	89	TCR Vβ11 / TRBV25-1 (required positive — dominant β-chain in human iNKT)		not_checked	PMC6059363: full text not available; not checked		2026-09-28
+EV00169		SOULCAP:SC000059	unreviewed	iNKT cell	CD1d-α-GalCer Tetramer		supports	"""the vast majority of α-GalCer loaded CD1d pentamer+ cells fall within the Vα24+Vβ11+ gate (median=99%), and the Vα24+Vβ11+ gate encompasses the majority of CD1d pentamer+ cells (median=99%)"""	29533501	10.1002/cyto.a.23357		Lal et al. 2018			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural (PMID 29533501)	archive/2026-09_literature_narratives/inkt_markers.md	98	CD1d-α-GalCer Tetramer (alternative iNKT identification)		not_checked	PMC6059363: full text not available; not checked		2026-09-28
+EV00170		SOULCAP:SC000059	unreviewed	iNKT cell	CD1d-α-GalCer Tetramer		supports	"""CD1d and MR1 tetramer can easily be substituted into this panel in place of these MAIT and iNKT TCRs"""	29533501	10.1002/cyto.a.23357		Lal et al. 2018			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural (PMID 29533501)	archive/2026-09_literature_narratives/inkt_markers.md	101	CD1d-α-GalCer Tetramer (alternative iNKT identification)		not_checked	PMC6059363: full text not available; not checked		2026-09-28
+EV00171		SOULCAP:SC000059	unreviewed	iNKT cell	CD1d-α-GalCer Tetramer		supports	"""Human T2NKT cells are conventionally detected with sulfatide-loaded CD1d tetramers; however, this method is noisy and fails to identify T2NKT cells that recognize other lipids."""	35720369	10.3389/fimmu.2022.898473	PMC9202826	Zhou et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35720369)	archive/2026-09_literature_narratives/inkt_markers.md	106	CD1d-α-GalCer Tetramer (alternative iNKT identification)		no	not found in Europe PMC full text: Human T2NKT cells are conventionally detected with sulfatide-loaded CD1d tetramers; however, this method is noisy and fails to identify T2NKT cells that recognize other lipids. [first 82 of 176 chars match; then: '; however, this method is nois']		2026-09-28
+EV00172			none_found	iNKT cell	CD56		supports	"""T2NKT cells were identified as CD3+ CD56+ CD161+ TCR-γδ- TCRVα7.2- and TCRVα24- cells."""	35720369	10.3389/fimmu.2022.898473	PMC9202826	Zhou et al. 2022			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 35720369)	archive/2026-09_literature_narratives/inkt_markers.md	142	Distinction: iNKT vs CD56+ T cells		no	not found in Europe PMC full text: T2NKT cells were identified as CD3+ CD56+ CD161+ TCR-γδ- TCRVα7.2- and TCRVα24- cells. [first 54 of 86 chars match; then: 'δ- TCRVα7.2- and TCRVα24- cell']		2026-09-28
+EV00173		SOULCAP:SC000059	unreviewed	iNKT cell	CD14		supports	"""gating should include time, singlets, and scatter profile, followed by dead cell exclusion, CD14/CD19 dumping, and CD3 positivity"""	29533501	10.1002/cyto.a.23357		Lal et al. 2018			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural (PMID 29533501)	archive/2026-09_literature_narratives/inkt_markers.md	153	CD14 / CD19 (lineage exclusion markers)		not_checked	PMC6059363: full text not available; not checked		2026-09-28
+EV00174		SOULCAP:SC000001|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD56		supports	"""Natural killer cells are prototypic members of the innate lymphoid cell (ILC) family and characterized in humans by expression of the phenotypic marker CD56 in the absence of CD3."""	28791027	10.3389/fimmu.2017.00892	PMC5522883	Van Acker HH et al. 2017			review	pubmed_publication_type: Journal Article|Review (PMID 28791027)	archive/2026-09_literature_narratives/nk_cell_markers.md	14	CD56 (positive marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00175		SOULCAP:SC000001|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD56		supports	"""human NK cells are typically divided into two main categories on the basis of the density of CD56, the 140-kDa isoform of the neural cell adhesion molecule (NCAM)2, on the cell surface: CD56bright and CD56dim NK cells."""	38956378	10.1038/s41590-024-01883-0	PMC11291291	Rebuffet L et al. 2024			atlas	proposed; PubMed publication type: Journal Article (PMID 38956378)	archive/2026-09_literature_narratives/nk_cell_markers.md	17	CD56 (positive marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00176		SOULCAP:SC000001|SOULCAP:SC000002|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD3		supports	"""Natural killer cells are prototypic members of the innate lymphoid cell (ILC) family and characterized in humans by expression of the phenotypic marker CD56 in the absence of CD3."""	28791027	10.3389/fimmu.2017.00892	PMC5522883	Van Acker HH et al. 2017			review	pubmed_publication_type: Journal Article|Review (PMID 28791027)	archive/2026-09_literature_narratives/nk_cell_markers.md	26	CD3 (exclusion marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00177		SOULCAP:SC000001|SOULCAP:SC000002|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD3		supports	"""ILCs are identified as “lineage” (Lin) negative lymphocytes, lacking expression of surface markers more specifically expressed on T cells (CD3, CD5, TCR), B cells (CD19, CD20, BCR), myelomonocytic cells (CD14, CD15, CD36), and dendritic cells (DCs) (CD116, CD123, CD303)."""	28396671	10.3389/fimmu.2017.00360	PMC5366880	Scoville SD et al. 2017			review	proposed; PubMed publication type: Journal Article (PMID 28396671)	archive/2026-09_literature_narratives/nk_cell_markers.md	29	CD3 (exclusion marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00178		SOULCAP:SC000001|SOULCAP:SC000002|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD3		supports	"""there also exists a CD56− NK cell subpopulation, namely CD3−CD4−CD14−CD19−CD16+NKp46+ lymphocytes"""	28791027	10.3389/fimmu.2017.00892	PMC5522883	Van Acker HH et al. 2017			review	pubmed_publication_type: Journal Article|Review (PMID 28791027)	archive/2026-09_literature_narratives/nk_cell_markers.md	34	CD3 (exclusion marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00179		SOULCAP:SC000001|SOULCAP:SC000002|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD19		supports	"""ILCs lack expression of markers specific for other leukocytes, including antigen-specific T and B cell receptors (i.e., CD3/TCR and CD19/BCR)."""	28396671	10.3389/fimmu.2017.00360	PMC5366880	Scoville SD et al. 2017			review	proposed; PubMed publication type: Journal Article (PMID 28396671)	archive/2026-09_literature_narratives/nk_cell_markers.md	43	CD19 (exclusion marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00180		SOULCAP:SC000001|SOULCAP:SC000002|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD19		supports	"""ILCs are identified as “lineage” (Lin) negative lymphocytes, lacking expression of surface markers more specifically expressed on T cells (CD3, CD5, TCR), B cells (CD19, CD20, BCR), myelomonocytic cells (CD14, CD15, CD36), and dendritic cells (DCs) (CD116, CD123, CD303)."""	28396671	10.3389/fimmu.2017.00360	PMC5366880	Scoville SD et al. 2017			review	proposed; PubMed publication type: Journal Article (PMID 28396671)	archive/2026-09_literature_narratives/nk_cell_markers.md	46	CD19 (exclusion marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00181		SOULCAP:SC000001|SOULCAP:SC000002|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD19		supports	"""there also exists a CD56− NK cell subpopulation, namely CD3−CD4−CD14−CD19−CD16+NKp46+ lymphocytes"""	28791027	10.3389/fimmu.2017.00892	PMC5522883	Van Acker HH et al. 2017			review	pubmed_publication_type: Journal Article|Review (PMID 28791027)	archive/2026-09_literature_narratives/nk_cell_markers.md	51	CD19 (exclusion marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00182		SOULCAP:SC000001|SOULCAP:SC000002|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD14		supports	"""ILCs are identified as “lineage” (Lin) negative lymphocytes, lacking expression of surface markers more specifically expressed on T cells (CD3, CD5, TCR), B cells (CD19, CD20, BCR), myelomonocytic cells (CD14, CD15, CD36), and dendritic cells (DCs) (CD116, CD123, CD303)."""	28396671	10.3389/fimmu.2017.00360	PMC5366880	Scoville SD et al. 2017			review	proposed; PubMed publication type: Journal Article (PMID 28396671)	archive/2026-09_literature_narratives/nk_cell_markers.md	60	CD14 (exclusion marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00183		SOULCAP:SC000001|SOULCAP:SC000002|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD14		supports	"""there also exists a CD56− NK cell subpopulation, namely CD3−CD4−CD14−CD19−CD16+NKp46+ lymphocytes"""	28791027	10.3389/fimmu.2017.00892	PMC5522883	Van Acker HH et al. 2017			review	pubmed_publication_type: Journal Article|Review (PMID 28791027)	archive/2026-09_literature_narratives/nk_cell_markers.md	63	CD14 (exclusion marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00184		SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD127		supports	"""In humans, all non-NK ILCs express CD127 (IL-7Rα) and CD161 (NKRP1A) (13–16), and they may be further distinguished according to the expression of other subset-associated surface antigens including CXCR3, CD294 (CRTH2), and CD117 (c-Kit) for ILC1s, ILC2s, and ILC3s, respectively (10, 17). Human NK cells can also express the pan-ILC markers CD127 and CD161 (18–20), but NK cells are typically distinguished by their surface expression of CD16 (FcγRIIIA), CD94/NKG2 heterodimers, killer immunoglobulin-like receptors (KIRs), NKG2D, and NKp80 (21)."""	28396671	10.3389/fimmu.2017.00360	PMC5366880	Scoville SD et al. 2017			review	proposed; PubMed publication type: Journal Article (PMID 28396671)	archive/2026-09_literature_narratives/nk_cell_markers.md	72	CD127 / IL-7Rα (negative or low on mature NK cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00185		SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD127		supports	"""They demonstrated that a minute CD127− fraction preferentially gave rise to NK cells whereas the predominant CD127+ fraction mostly retained ILC3 features. Thus CD127 has since been touted as a critical marker distinguishing human stage 3 NK cell precursors from ILC3s"""	28396671	10.3389/fimmu.2017.00360	PMC5366880	Scoville SD et al. 2017			review	proposed; PubMed publication type: Journal Article (PMID 28396671)	archive/2026-09_literature_narratives/nk_cell_markers.md	77	CD127 / IL-7Rα (negative or low on mature NK cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00186		SOULCAP:SC000001|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD56		supports	"""They are usually further divided into two subsets based on their surface level expression of CD56 (3). Whereas most NK cells in peripheral blood are CD56dim, CD56bright NK cells are more abundant in tissues."""	28791027	10.3389/fimmu.2017.00892	PMC5522883	Van Acker HH et al. 2017			review	pubmed_publication_type: Journal Article|Review (PMID 28791027)	archive/2026-09_literature_narratives/nk_cell_markers.md	88	CD56bright vs CD56dim subsets		yes	exact match in Europe PMC full text		2026-09-28
+EV00187		SOULCAP:SC000001|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD56		supports	"""They are usually further divided into two subsets based on their surface level expression of CD56 (3). Whereas most NK cells in peripheral blood are CD56dim, CD56bright NK cells are more abundant in tissues."""	28791027	10.3389/fimmu.2017.00892	PMC5522883	Van Acker HH et al. 2017			review	pubmed_publication_type: Journal Article|Review (PMID 28791027)	archive/2026-09_literature_narratives/nk_cell_markers.md	88	CD56bright vs CD56dim subsets		yes	exact match in Europe PMC full text		2026-09-28
+EV00188		SOULCAP:SC000001|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD56		supports	"""Two subsets of human peripheral blood (PB) NK cells can be distinguished according to their relative expression of the pan-NK cell surface marker, CD56 (NCAM-1): “CD56bright” and “CD56dim” (22, 23). CD56bright human NK cells express high levels of CD62L (l-selectin) and CD94 but absent or low levels of CD16 and KIRs; they predominate in secondary lymphoid tissues (SLTs) such as lymph nodes (LNs) and tonsils; they show low baseline perforin expression and cytotoxic activity ex vivo; and they rapidly produce cytokines, including IFN-γ, following stimulation by monocyte-derived cytokines (“monokines”), such as IL-12, IL-15, and IL-18 (22). In contrast, CD56dim NK cells are CD16hi and express more KIRs but less CD94 and CD62L; they predominate in PB; they show high baseline perforin expression and cytotoxicity against MHC class I negative target cells; and they preferentially produce cytokines in response to direct target cell interactions rather than via monokine stimulation (3)."""	28396671	10.3389/fimmu.2017.00360	PMC5366880	Scoville SD et al. 2017			review	proposed; PubMed publication type: Journal Article (PMID 28396671)	archive/2026-09_literature_narratives/nk_cell_markers.md	91	CD56bright vs CD56dim subsets		yes	exact match in Europe PMC full text		2026-09-28
+EV00189		SOULCAP:SC000001|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD56		supports	"""Two subsets of human peripheral blood (PB) NK cells can be distinguished according to their relative expression of the pan-NK cell surface marker, CD56 (NCAM-1): “CD56bright” and “CD56dim” (22, 23). CD56bright human NK cells express high levels of CD62L (l-selectin) and CD94 but absent or low levels of CD16 and KIRs; they predominate in secondary lymphoid tissues (SLTs) such as lymph nodes (LNs) and tonsils; they show low baseline perforin expression and cytotoxic activity ex vivo; and they rapidly produce cytokines, including IFN-γ, following stimulation by monocyte-derived cytokines (“monokines”), such as IL-12, IL-15, and IL-18 (22). In contrast, CD56dim NK cells are CD16hi and express more KIRs but less CD94 and CD62L; they predominate in PB; they show high baseline perforin expression and cytotoxicity against MHC class I negative target cells; and they preferentially produce cytokines in response to direct target cell interactions rather than via monokine stimulation (3)."""	28396671	10.3389/fimmu.2017.00360	PMC5366880	Scoville SD et al. 2017			review	proposed; PubMed publication type: Journal Article (PMID 28396671)	archive/2026-09_literature_narratives/nk_cell_markers.md	91	CD56bright vs CD56dim subsets		yes	exact match in Europe PMC full text		2026-09-28
+EV00190		SOULCAP:SC000001|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD56		supports	"""The NK2 cluster was defined by high expression of CD56, CD27, CD44, CD54, CD45RB, CD314 (NKG2D) and CD335 (NKp46) and little or no expression of CD16 and CD57 at the protein level (Fig. 1c,d)."""	38956378	10.1038/s41590-024-01883-0	PMC11291291	Rebuffet L et al. 2024			atlas	proposed; PubMed publication type: Journal Article (PMID 38956378)	archive/2026-09_literature_narratives/nk_cell_markers.md	96	CD56bright vs CD56dim subsets		yes	exact match in Europe PMC full text		2026-09-28
+EV00191		SOULCAP:SC000001|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD56		supports	"""The NK2 cluster was defined by high expression of CD56, CD27, CD44, CD54, CD45RB, CD314 (NKG2D) and CD335 (NKp46) and little or no expression of CD16 and CD57 at the protein level (Fig. 1c,d)."""	38956378	10.1038/s41590-024-01883-0	PMC11291291	Rebuffet L et al. 2024			atlas	proposed; PubMed publication type: Journal Article (PMID 38956378)	archive/2026-09_literature_narratives/nk_cell_markers.md	96	CD56bright vs CD56dim subsets		yes	exact match in Europe PMC full text		2026-09-28
+EV00192		SOULCAP:SC000002|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD16		supports	"""NK cells are typically distinguished by their surface expression of CD16 (FcγRIIIA), CD94/NKG2 heterodimers, killer immunoglobulin-like receptors (KIRs), NKG2D, and NKp80 (21)."""	28396671	10.3389/fimmu.2017.00360	PMC5366880	Scoville SD et al. 2017			review	proposed; PubMed publication type: Journal Article (PMID 28396671)	archive/2026-09_literature_narratives/nk_cell_markers.md	105	CD16 (expressed on CD56dim NK cells; absent/low on CD56bright)		yes	exact match in Europe PMC full text		2026-09-28
+EV00193		SOULCAP:SC000002|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD16		supports	"""The NK1 cluster was marked by high protein expression of CD16, CX3CR1, CD161, β7-integrin and CD38 (Fig. 1c,d)."""	38956378	10.1038/s41590-024-01883-0	PMC11291291	Rebuffet L et al. 2024			atlas	proposed; PubMed publication type: Journal Article (PMID 38956378)	archive/2026-09_literature_narratives/nk_cell_markers.md	108	CD16 (expressed on CD56dim NK cells; absent/low on CD56bright)		yes	exact match in Europe PMC full text		2026-09-28
+EV00194		SOULCAP:SC000002|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD16		supports	"""Expression of the classic NK cell markers CD57 and CD16 was reduced or absent on NK2 cells compared with NK1 and NK3 cells, indicating that the NK2 population comprised CD56bright and early-stage CD56dim NK cells."""	38956378	10.1038/s41590-024-01883-0	PMC11291291	Rebuffet L et al. 2024			atlas	proposed; PubMed publication type: Journal Article (PMID 38956378)	archive/2026-09_literature_narratives/nk_cell_markers.md	111	CD16 (expressed on CD56dim NK cells; absent/low on CD56bright)		yes	exact match in Europe PMC full text		2026-09-28
+EV00195		SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD57		supports	"""Further distinctions in the CD56dim population are made on the basis of expression of the CD57 carbohydrate moiety3 on the cell surface and the absence of CD94–NKG2A and CD62L; cells with these features comprise a more mature subset4–7."""	38956378	10.1038/s41590-024-01883-0	PMC11291291	Rebuffet L et al. 2024			atlas	proposed; PubMed publication type: Journal Article (PMID 38956378)	archive/2026-09_literature_narratives/nk_cell_markers.md	120	CD57 (positive marker for mature NK subsets)		yes	exact match in Europe PMC full text		2026-09-28
+EV00196		SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD57		supports	"""this cluster's preferential expression of CD57 and PRDM1 suggests that it also includes mature CD57+CD56dim NK cells that are not produced in response to HCMV."""	38956378	10.1038/s41590-024-01883-0	PMC11291291	Rebuffet L et al. 2024			atlas	proposed; PubMed publication type: Journal Article (PMID 38956378)	archive/2026-09_literature_narratives/nk_cell_markers.md	123	CD57 (positive marker for mature NK subsets)		no	near-match only (differs in case, dashes or quote characters): this cluster's preferential expression of CD57 and PRDM1 suggests that it also includes mature CD57+CD56dim NK cells that are not produced in response to HCMV.		2026-09-28
+EV00197		SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD57		supports	"""some that were NKp80+CD16+ and coexpressed KIRs and CD57, the latter of which has been associated with terminal maturation and may represent a putative “stage 6” of human NK cell development"""	28396671	10.3389/fimmu.2017.00360	PMC5366880	Scoville SD et al. 2017			review	proposed; PubMed publication type: Journal Article (PMID 28396671)	archive/2026-09_literature_narratives/nk_cell_markers.md	126	CD57 (positive marker for mature NK subsets)		yes	exact match in Europe PMC full text		2026-09-28
+EV00198		SOULCAP:SC000001|SOULCAP:SC000002|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	HLA-DR		supports	"""Notably, NK3B (cluster 1) was distinguished by expression of members of the HLA-D gene family, CD74, CCL5, CD7 and KLRC1, and NK3A exhibited enhanced cytotoxic capabilities (through expression of GZMA, GZMB and PRF1)"""	38956378	10.1038/s41590-024-01883-0	PMC11291291	Rebuffet L et al. 2024			atlas	proposed; PubMed publication type: Journal Article (PMID 38956378)	archive/2026-09_literature_narratives/nk_cell_markers.md	135	HLA-DR (ideal exclusion; expressed on a subset of NK cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00199		SOULCAP:SC000001|SOULCAP:SC000002|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD11c		supports	"""CD11C (ITGAX) expression was more pronounced in NK2."""	38956378	10.1038/s41590-024-01883-0	PMC11291291	Rebuffet L et al. 2024			atlas	proposed; PubMed publication type: Journal Article (PMID 38956378)	archive/2026-09_literature_narratives/nk_cell_markers.md	146	CD11c (expressed on NK2 / CD56bright subset)		yes	exact match in Europe PMC full text		2026-09-28
+EV00200		SOULCAP:SC000001|SOULCAP:SC000002|SOULCAP:SC000003|SOULCAP:SC000004|SOULCAP:SC000005	unreviewed	NK cell	CD11c		supports	"""Activation markers also served as differential markers, with CD69 being most prominent in NK1B and NKint, whereas TNFRSF18 (encoding GITR) was more pronounced in NK2. Moreover, classic markers of NK maturation aligned with earlier descriptions: CD56 (NCAM1) was more prevalent in NK2, and CD16 (FCGR3A) expression increased progressively from NK2 to NK1C. In addition, CD11B (ITGAM) levels were higher in NK1B, whereas CD11C (ITGAX) expression was more pronounced in NK2."""	38956378	10.1038/s41590-024-01883-0	PMC11291291	Rebuffet L et al. 2024			atlas	proposed; PubMed publication type: Journal Article (PMID 38956378)	archive/2026-09_literature_narratives/nk_cell_markers.md	151	CD11c (expressed on NK2 / CD56bright subset)		yes	exact match in Europe PMC full text		2026-09-28
+EV00201		SOULCAP:SC000045|SOULCAP:SC000046|SOULCAP:SC000047|SOULCAP:SC000048|SOULCAP:SC000049|SOULCAP:SC000050|SOULCAP:SC000051|SOULCAP:SC000052|SOULCAP:SC000053|SOULCAP:SC000054|SOULCAP:SC000055|SOULCAP:SC000056|SOULCAP:SC000057|SOULCAP:SC000058|SOULCAP:SC000059|SOULCAP:SC000060|SOULCAP:SC000061|SOULCAP:SC000062|SOULCAP:SC000063|SOULCAP:SC000064|SOULCAP:SC000065|SOULCAP:SC000066|SOULCAP:SC000067|SOULCAP:SC000068|SOULCAP:SC000069|SOULCAP:SC000070|SOULCAP:SC000071|SOULCAP:SC000072|SOULCAP:SC000073|SOULCAP:SC000074|SOULCAP:SC000075|SOULCAP:SC000076|SOULCAP:SC000077|SOULCAP:SC000078|SOULCAP:SC000079|SOULCAP:SC000107|SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119|SOULCAP:SC000121|SOULCAP:SC000122|SOULCAP:SC000123|SOULCAP:SC000124|SOULCAP:SC000125|SOULCAP:SC000126|SOULCAP:SC000127	unreviewed	T cell	CD3		supports	"""CD3+/CD8−/CD4+/CCR7+/CD45RA+"""	26861911	10.1038/srep20686	PMC4748244	Finak G et al. 2016			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, N.I.H., Intramural|Research Support, Non-U.S. Gov't (PMID 26861911)	archive/2026-09_literature_narratives/t_cell_markers.md	25	CD3 (required positive — pan-T cell marker)	CD4 Naïve — Table 2 gating string	yes	exact match in Europe PMC full text		2026-09-28
+EV00202		SOULCAP:SC000045|SOULCAP:SC000046|SOULCAP:SC000047|SOULCAP:SC000048|SOULCAP:SC000049|SOULCAP:SC000050|SOULCAP:SC000051|SOULCAP:SC000052|SOULCAP:SC000053|SOULCAP:SC000054|SOULCAP:SC000055|SOULCAP:SC000056|SOULCAP:SC000057|SOULCAP:SC000058|SOULCAP:SC000059|SOULCAP:SC000060|SOULCAP:SC000061|SOULCAP:SC000062|SOULCAP:SC000063|SOULCAP:SC000064|SOULCAP:SC000065|SOULCAP:SC000066|SOULCAP:SC000067|SOULCAP:SC000068|SOULCAP:SC000069|SOULCAP:SC000070|SOULCAP:SC000071|SOULCAP:SC000072|SOULCAP:SC000073|SOULCAP:SC000074|SOULCAP:SC000075|SOULCAP:SC000076|SOULCAP:SC000077|SOULCAP:SC000078|SOULCAP:SC000079|SOULCAP:SC000107|SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119|SOULCAP:SC000121|SOULCAP:SC000122|SOULCAP:SC000123|SOULCAP:SC000124|SOULCAP:SC000125|SOULCAP:SC000126|SOULCAP:SC000127	unreviewed	T cell	CD3		supports	"""CD3+/CD8+/CD4−/CCR7+/CD45RA+"""	26861911	10.1038/srep20686	PMC4748244	Finak G et al. 2016			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, N.I.H., Intramural|Research Support, Non-U.S. Gov't (PMID 26861911)	archive/2026-09_literature_narratives/t_cell_markers.md	27	CD3 (required positive — pan-T cell marker)	CD8 Naïve — Table 2 gating string	yes	exact match in Europe PMC full text		2026-09-28
+EV00203		SOULCAP:SC000045|SOULCAP:SC000046|SOULCAP:SC000047|SOULCAP:SC000048|SOULCAP:SC000049|SOULCAP:SC000050|SOULCAP:SC000051|SOULCAP:SC000052|SOULCAP:SC000053|SOULCAP:SC000054|SOULCAP:SC000055|SOULCAP:SC000056|SOULCAP:SC000057|SOULCAP:SC000058|SOULCAP:SC000059|SOULCAP:SC000060|SOULCAP:SC000061|SOULCAP:SC000062|SOULCAP:SC000063|SOULCAP:SC000064|SOULCAP:SC000065|SOULCAP:SC000066|SOULCAP:SC000067|SOULCAP:SC000068|SOULCAP:SC000069|SOULCAP:SC000070|SOULCAP:SC000071|SOULCAP:SC000072|SOULCAP:SC000073|SOULCAP:SC000074|SOULCAP:SC000075|SOULCAP:SC000076|SOULCAP:SC000077|SOULCAP:SC000078|SOULCAP:SC000079|SOULCAP:SC000107|SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119|SOULCAP:SC000121|SOULCAP:SC000122|SOULCAP:SC000123|SOULCAP:SC000124|SOULCAP:SC000125|SOULCAP:SC000126|SOULCAP:SC000127	unreviewed	T cell	CD3		supports	"""Purity of PHA- and Zole- expanded αβ and γδ T-cell cultures and MACS-isolated T-cell populations were assessed by flow cytometry using anti-CD3, CD4, CD8, γδ TCR, and αβ TCR monoclonal antibodies."""	41727470	10.3389/fimmu.2026.1739493	PMC12920462	Kelm M et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 41727470)	archive/2026-09_literature_narratives/t_cell_markers.md	34	CD3 (required positive — pan-T cell marker)		yes	exact match in Europe PMC full text		2026-09-28
+EV00204		SOULCAP:SC000047|SOULCAP:SC000048|SOULCAP:SC000050|SOULCAP:SC000051|SOULCAP:SC000052|SOULCAP:SC000053|SOULCAP:SC000055|SOULCAP:SC000056|SOULCAP:SC000057|SOULCAP:SC000058|SOULCAP:SC000062|SOULCAP:SC000063|SOULCAP:SC000064|SOULCAP:SC000065|SOULCAP:SC000066|SOULCAP:SC000067|SOULCAP:SC000068|SOULCAP:SC000069|SOULCAP:SC000070|SOULCAP:SC000071|SOULCAP:SC000072|SOULCAP:SC000073|SOULCAP:SC000076|SOULCAP:SC000077|SOULCAP:SC000078|SOULCAP:SC000079|SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119|SOULCAP:SC000121	unreviewed	T cell	CD4		supports	"""CD3+/CD8−/CD4+/CCR7+/CD45RA−"""	26861911	10.1038/srep20686	PMC4748244	Finak G et al. 2016			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, N.I.H., Intramural|Research Support, Non-U.S. Gov't (PMID 26861911)	archive/2026-09_literature_narratives/t_cell_markers.md	46	CD4 and CD8 (lineage markers for T helper and cytotoxic T cells)	CD4 Central Memory — Table 2 gating string	yes	exact match in Europe PMC full text		2026-09-28
+EV00205		SOULCAP:SC000047|SOULCAP:SC000048|SOULCAP:SC000050|SOULCAP:SC000051|SOULCAP:SC000052|SOULCAP:SC000053|SOULCAP:SC000055|SOULCAP:SC000056|SOULCAP:SC000057|SOULCAP:SC000058|SOULCAP:SC000062|SOULCAP:SC000063|SOULCAP:SC000064|SOULCAP:SC000065|SOULCAP:SC000066|SOULCAP:SC000067|SOULCAP:SC000068|SOULCAP:SC000069|SOULCAP:SC000070|SOULCAP:SC000071|SOULCAP:SC000072|SOULCAP:SC000073|SOULCAP:SC000076|SOULCAP:SC000077|SOULCAP:SC000078|SOULCAP:SC000079|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119|SOULCAP:SC000121	unreviewed	T cell	CD8		supports	"""CD3+/CD8−/CD4+/CCR7+/CD45RA−"""	26861911	10.1038/srep20686	PMC4748244	Finak G et al. 2016			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, N.I.H., Intramural|Research Support, Non-U.S. Gov't (PMID 26861911)	archive/2026-09_literature_narratives/t_cell_markers.md	46	CD4 and CD8 (lineage markers for T helper and cytotoxic T cells)	CD4 Central Memory — Table 2 gating string	yes	exact match in Europe PMC full text		2026-09-28
+EV00206		SOULCAP:SC000047|SOULCAP:SC000048|SOULCAP:SC000050|SOULCAP:SC000051|SOULCAP:SC000052|SOULCAP:SC000053|SOULCAP:SC000055|SOULCAP:SC000056|SOULCAP:SC000057|SOULCAP:SC000058|SOULCAP:SC000062|SOULCAP:SC000063|SOULCAP:SC000064|SOULCAP:SC000065|SOULCAP:SC000066|SOULCAP:SC000067|SOULCAP:SC000068|SOULCAP:SC000069|SOULCAP:SC000070|SOULCAP:SC000071|SOULCAP:SC000072|SOULCAP:SC000073|SOULCAP:SC000076|SOULCAP:SC000077|SOULCAP:SC000078|SOULCAP:SC000079|SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119|SOULCAP:SC000121	unreviewed	T cell	CD4		supports	"""CD3+/CD8+/CD4−/CCR7+/CD45RA+"""	26861911	10.1038/srep20686	PMC4748244	Finak G et al. 2016			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, N.I.H., Intramural|Research Support, Non-U.S. Gov't (PMID 26861911)	archive/2026-09_literature_narratives/t_cell_markers.md	48	CD4 and CD8 (lineage markers for T helper and cytotoxic T cells)	CD8 Naïve — Table 2 gating string	yes	exact match in Europe PMC full text		2026-09-28
+EV00207		SOULCAP:SC000047|SOULCAP:SC000048|SOULCAP:SC000050|SOULCAP:SC000051|SOULCAP:SC000052|SOULCAP:SC000053|SOULCAP:SC000055|SOULCAP:SC000056|SOULCAP:SC000057|SOULCAP:SC000058|SOULCAP:SC000062|SOULCAP:SC000063|SOULCAP:SC000064|SOULCAP:SC000065|SOULCAP:SC000066|SOULCAP:SC000067|SOULCAP:SC000068|SOULCAP:SC000069|SOULCAP:SC000070|SOULCAP:SC000071|SOULCAP:SC000072|SOULCAP:SC000073|SOULCAP:SC000076|SOULCAP:SC000077|SOULCAP:SC000078|SOULCAP:SC000079|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119|SOULCAP:SC000121	unreviewed	T cell	CD8		supports	"""CD3+/CD8+/CD4−/CCR7+/CD45RA+"""	26861911	10.1038/srep20686	PMC4748244	Finak G et al. 2016			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, N.I.H., Intramural|Research Support, Non-U.S. Gov't (PMID 26861911)	archive/2026-09_literature_narratives/t_cell_markers.md	48	CD4 and CD8 (lineage markers for T helper and cytotoxic T cells)	CD8 Naïve — Table 2 gating string	yes	exact match in Europe PMC full text		2026-09-28
+EV00208		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD183		supports	"""Th1, CXCR3+CCR6–; Th17, CXCR3–CCR6+; Th1–17, CXCR3+CCR6+"""	41757944	10.1093/infdis/jiag115	PMC13127770	Nalubega M et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Comparative Study (PMID 41757944)	archive/2026-09_literature_narratives/t_cell_markers.md	83	CD183 / CXCR3 (Th1 marker — positive on Th1, negative on Th2/Th17)	Figure 1 description	yes	exact match in Europe PMC full text		2026-09-28
+EV00209		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD183		supports	"""Th1 (CXCR3+CCR6–CCR4–), Th2 (CXCR3–CCR6–CCR4+), Th17 (CXCR3–CCR6+CCR4+)"""	41757944	10.1093/infdis/jiag115	PMC13127770	Nalubega M et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Comparative Study (PMID 41757944)	archive/2026-09_literature_narratives/t_cell_markers.md	85	CD183 / CXCR3 (Th1 marker — positive on Th1, negative on Th2/Th17)	Figure 3 description	yes	exact match in Europe PMC full text		2026-09-28
+EV00210		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD183		supports	"""Th1 (CXCR3+CCR4−CCR6− CD62LlowCD4+ T cells)"""	42047825	10.1007/s00262-026-04357-4	PMC13125411	Kamigaichi A et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 42047825)	archive/2026-09_literature_narratives/t_cell_markers.md	90	CD183 / CXCR3 (Th1 marker — positive on Th1, negative on Th2/Th17)		yes	exact match in Europe PMC full text		2026-09-28
+EV00211		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD183		supports	"""define (C) CD154+ Th1 (CXCR3+CCR4−CCR10−CCR6−), (D) CD154+ Th2 (CXCR3−CCR4+CCR10−CCR6−), (E) CD154+ Th17 (CXCR3−CCR4+CCR10−CCR6+)"""	42327791	10.3389/fimmu.2026.1798583	PMC13275367	Pospich R et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 42327791)	archive/2026-09_literature_narratives/t_cell_markers.md	94	CD183 / CXCR3 (Th1 marker — positive on Th1, negative on Th2/Th17)		yes	exact match in Europe PMC full text		2026-09-28
+EV00212		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD183		supports	"""Th1 (CXCR3+ CCR6−), Th17 (CXCR3− CCR6+), and Th2 (CXCR3− CCR6−"""	41928597	10.1002/eji.70177	PMC13047356	Gholizadeh F et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 41928597)	archive/2026-09_literature_narratives/t_cell_markers.md	99	CD183 / CXCR3 (Th1 marker — positive on Th1, negative on Th2/Th17)	figure legend; Th2 further defined as CCR4+	yes	exact match in Europe PMC full text		2026-09-28
+EV00213		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD183		supports	"""human Th9 cells express CD183 (CXCR3), CD193 (CCR3), and CD196 (CCR6), but not CD194+(CCR4+) or D294 (CRTH2), which are expressed on the surface of Th2 cells"""		10.3389/fimmu.2020.01026	PMC7251969	Chen T et al. 2020			review	pubmed_publication_type: Journal Article|Research Support, Non-U.S. Gov't|Review (PMID 32508847)	archive/2026-09_literature_narratives/t_cell_markers.md	107	CD183 / CXCR3 (Th1 marker — positive on Th1, negative on Th2/Th17)	citation corrected from 'Frontiers Immunology 2020' via PubMed PMID 32508847 (Chen T, Guo J, Cai Z, Li B. Front Immunol 2020)	yes	exact match in Europe PMC full text		2026-09-28
+EV00214		SOULCAP:SC000107|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD185		supports	"""CXCR5+ Tfh vs. CXCR5− non‐Tfh"""	41928597	10.1002/eji.70177	PMC13047356	Gholizadeh F et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 41928597)	archive/2026-09_literature_narratives/t_cell_markers.md	121	CD185 / CXCR5 (Tfh marker — positive on follicular helper T cells)	figure description	yes	exact match in Europe PMC full text		2026-09-28
+EV00215		SOULCAP:SC000107|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD185		supports	"""CD3+CD4+CD45RO+PD-1highCXCR5+"""	41351179	10.1186/s13075-025-03701-w	PMC12797565	Liao H et al. 2025			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 41351179)	archive/2026-09_literature_narratives/t_cell_markers.md	125	CD185 / CXCR5 (Tfh marker — positive on follicular helper T cells)	circulating Tfh cell definition	yes	exact match in Europe PMC full text		2026-09-28
+EV00216		SOULCAP:SC000107|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD185		supports	"""CD3+CD4+CD45RO+PD-1highCXCR5−"""	41351179	10.1186/s13075-025-03701-w	PMC12797565	Liao H et al. 2025			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 41351179)	archive/2026-09_literature_narratives/t_cell_markers.md	127	CD185 / CXCR5 (Tfh marker — positive on follicular helper T cells)	circulating peripheral helper T cell definition	yes	exact match in Europe PMC full text		2026-09-28
+EV00217		SOULCAP:SC000107|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD185		supports	"""pTfh (CXCR5+PD1+)"""	41757944	10.1093/infdis/jiag115	PMC13127770	Nalubega M et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Comparative Study (PMID 41757944)	archive/2026-09_literature_narratives/t_cell_markers.md	131	CD185 / CXCR5 (Tfh marker — positive on follicular helper T cells)	Methods section	yes	exact match in Europe PMC full text		2026-09-28
+EV00218		SOULCAP:SC000107|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD185		supports	"""pTfh1 (CXCR3+CCR6–), pTfh2 (CXCR3–CCR6–), pTfh17 (CXCR3–CCR6+)"""	41757944	10.1093/infdis/jiag115	PMC13127770	Nalubega M et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Comparative Study (PMID 41757944)	archive/2026-09_literature_narratives/t_cell_markers.md	133	CD185 / CXCR5 (Tfh marker — positive on follicular helper T cells)	Methods section	yes	exact match in Europe PMC full text		2026-09-28
+EV00219		SOULCAP:SC000107|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD185		supports	"""we used the following anti-chemokine receptors antibodies – CXCR5, CCR6, CXCR3, and CCR4"""	41376646	10.3389/fimmu.2025.1614461	PMC12685880	Starshinova A et al. 2025			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 41376646)	archive/2026-09_literature_narratives/t_cell_markers.md	140	CD185 / CXCR5 (Tfh marker — positive on follicular helper T cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00220		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD194		supports	"""Th2 (CXCR3–CCR6–CCR4+), Th17 (CXCR3–CCR6+CCR4+)"""	41757944	10.1093/infdis/jiag115	PMC13127770	Nalubega M et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Comparative Study (PMID 41757944)	archive/2026-09_literature_narratives/t_cell_markers.md	151	CD194 / CCR4 (Th2 and Th17 marker — positive on Th2, variable on Th17)	Figure 3 description	yes	exact match in Europe PMC full text		2026-09-28
+EV00221		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD194		supports	"""cluster 9 was defined as Th2 cells, as they highly expressed CCR4 but did not express biomarkers of Tfh cells (CXCR5, PD-1), Th1 cells (CXCR3), Th17 cells (CCR6), and Treg cells (CD25, Foxp3)"""	41826820	10.1186/s10020-026-01455-y	PMC13101149	Zhu H et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 41826820)	archive/2026-09_literature_narratives/t_cell_markers.md	155	CD194 / CCR4 (Th2 and Th17 marker — positive on Th2, variable on Th17)		yes	exact match in Europe PMC full text		2026-09-28
+EV00222		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD194		supports	"""Th2 (CXCR3−CCR4+CCR6− CD62LlowCD4+ T cells)"""	42047825	10.1007/s00262-026-04357-4	PMC13125411	Kamigaichi A et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 42047825)	archive/2026-09_literature_narratives/t_cell_markers.md	161	CD194 / CCR4 (Th2 and Th17 marker — positive on Th2, variable on Th17)		yes	exact match in Europe PMC full text		2026-09-28
+EV00223		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD194		supports	"""Th17 (CXCR3−CCR4+CCR6+ CD62LlowCD4+ T cells)"""	42047825	10.1007/s00262-026-04357-4	PMC13125411	Kamigaichi A et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 42047825)	archive/2026-09_literature_narratives/t_cell_markers.md	163	CD194 / CCR4 (Th2 and Th17 marker — positive on Th2, variable on Th17)		yes	exact match in Europe PMC full text		2026-09-28
+EV00224		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD194		supports	"""We detected predominantly the marker combination described for Th2 cells (Figure 2D, CXCR3−CCR6−CCR10−CCR4+) and Th17 cells (Figure 2E, CXCR3−CCR6+CCR4+CCR10−) on SplB-specific T cells."""	42327791	10.3389/fimmu.2026.1798583	PMC13275367	Pospich R et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 42327791)	archive/2026-09_literature_narratives/t_cell_markers.md	167	CD194 / CCR4 (Th2 and Th17 marker — positive on Th2, variable on Th17)		exact_except_trailing_punctuation	exact apart from trailing punctuation (the paper likely has a reference marker or different ending there): We detected predominantly the marker combination described for Th2 cells (Figure 2D, CXCR3−CCR6−CCR10−CCR4+) and Th17 cells (Figure 2E, CXCR3−CCR6+CCR4+CCR10−) on SplB-specific T cells.		2026-09-28
+EV00225		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD194		supports	"""human Th9 cells express CD183 (CXCR3), CD193 (CCR3), and CD196 (CCR6), but not CD194+(CCR4+) or D294 (CRTH2), which are expressed on the surface of Th2 cells"""		10.3389/fimmu.2020.01026	PMC7251969	Chen T et al. 2020			review	pubmed_publication_type: Journal Article|Research Support, Non-U.S. Gov't|Review (PMID 32508847)	archive/2026-09_literature_narratives/t_cell_markers.md	173	CD194 / CCR4 (Th2 and Th17 marker — positive on Th2, variable on Th17)	citation corrected from 'Frontiers Immunology 2020' via PubMed PMID 32508847 (Chen T, Guo J, Cai Z, Li B. Front Immunol 2020)	yes	exact match in Europe PMC full text		2026-09-28
+EV00226		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD196		supports	"""Th17 (CXCR3–CCR6+CCR4+)"""	41757944	10.1093/infdis/jiag115	PMC13127770	Nalubega M et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Comparative Study (PMID 41757944)	archive/2026-09_literature_narratives/t_cell_markers.md	184	CD196 / CCR6 (Th17 marker — positive on Th17, negative on Th1/Th2)	Figure 3	yes	exact match in Europe PMC full text		2026-09-28
+EV00227		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD196		supports	"""pTfh17 (CXCR3–CCR6+)"""	41757944	10.1093/infdis/jiag115	PMC13127770	Nalubega M et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Comparative Study (PMID 41757944)	archive/2026-09_literature_narratives/t_cell_markers.md	186	CD196 / CCR6 (Th17 marker — positive on Th17, negative on Th1/Th2)	Methods	yes	exact match in Europe PMC full text		2026-09-28
+EV00228		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD196		supports	"""CD154+ Th17 (CXCR3−CCR4+CCR10−CCR6+)"""	42327791	10.3389/fimmu.2026.1798583	PMC13275367	Pospich R et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 42327791)	archive/2026-09_literature_narratives/t_cell_markers.md	190	CD196 / CCR6 (Th17 marker — positive on Th17, negative on Th1/Th2)		yes	exact match in Europe PMC full text		2026-09-28
+EV00229		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD196		supports	"""Th17 (CXCR3−CCR4+CCR6+ CD62LlowCD4+ T cells)"""	42047825	10.1007/s00262-026-04357-4	PMC13125411	Kamigaichi A et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 42047825)	archive/2026-09_literature_narratives/t_cell_markers.md	194	CD196 / CCR6 (Th17 marker — positive on Th17, negative on Th1/Th2)		yes	exact match in Europe PMC full text		2026-09-28
+EV00230		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD196		supports	"""human Th9 cells express CD183 (CXCR3), CD193 (CCR3), and CD196 (CCR6)"""		10.3389/fimmu.2020.01026	PMC7251969	Chen T et al. 2020			review	pubmed_publication_type: Journal Article|Research Support, Non-U.S. Gov't|Review (PMID 32508847)	archive/2026-09_literature_narratives/t_cell_markers.md	198	CD196 / CCR6 (Th17 marker — positive on Th17, negative on Th1/Th2)	citation corrected from 'Frontiers Immunology 2020' via PubMed PMID 32508847 (Chen T, Guo J, Cai Z, Li B. Front Immunol 2020)	yes	exact match in Europe PMC full text		2026-09-28
+EV00231		SOULCAP:SC000107|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000115|SOULCAP:SC000116|SOULCAP:SC000117|SOULCAP:SC000118|SOULCAP:SC000119	unreviewed	T cell	CD196		supports	"""Th1 (CXCR3+ CCR6−), Th17 (CXCR3− CCR6+), and Th2 (CXCR3− CCR6−"""	41928597	10.1002/eji.70177	PMC13047356	Gholizadeh F et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 41928597)	archive/2026-09_literature_narratives/t_cell_markers.md	209	CD196 / CCR6 (Th17 marker — positive on Th17, negative on Th1/Th2)		yes	exact match in Europe PMC full text		2026-09-28
+EV00232		SOULCAP:SC000112|SOULCAP:SC000117	unreviewed	T cell	CD294		supports	"""human Th9 cells express CD183 (CXCR3), CD193 (CCR3), and CD196 (CCR6), but not CD194+(CCR4+) or D294 (CRTH2), which are expressed on the surface of Th2 cells"""		10.3389/fimmu.2020.01026	PMC7251969	Chen T et al. 2020			review	pubmed_publication_type: Journal Article|Research Support, Non-U.S. Gov't|Review (PMID 32508847)	archive/2026-09_literature_narratives/t_cell_markers.md	220	CD294 / CRTH2 (Th2 marker — helps distinguish Th2 from Th9)	citation corrected from 'Frontiers Immunology 2020' via PubMed PMID 32508847 (Chen T, Guo J, Cai Z, Li B. Front Immunol 2020)	yes	exact match in Europe PMC full text		2026-09-28
+EV00233		SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000121	unreviewed	T cell	CD25		supports	"""Tregs are typically identified by the expression of the transcription factor FoxP3 or the IL-2 receptor α-chain (CD25)...the absence or low expression of the IL-7 receptor α-chain (CD127) has been proposed as a distinguishing marker for Tregs"""	41394832	10.3389/fimmu.2025.1676937	PMC12695756	Kamran M et al. 2025			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 41394832)	archive/2026-09_literature_narratives/t_cell_markers.md	239	CD25 and CD127lo/- (Treg markers — CD25+CD127low defines regulatory T cells)		no	not found in Europe PMC full text: Tregs are typically identified by the expression of the transcription factor FoxP3 or the IL-2 receptor α-chain (CD25) [first 7 of 118 chars match; then: 're typically identified by the']	EV00259	2026-09-28
+EV00234		SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000121	unreviewed	T cell	CD127		supports	"""Tregs are typically identified by the expression of the transcription factor FoxP3 or the IL-2 receptor α-chain (CD25)...the absence or low expression of the IL-7 receptor α-chain (CD127) has been proposed as a distinguishing marker for Tregs"""	41394832	10.3389/fimmu.2025.1676937	PMC12695756	Kamran M et al. 2025			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 41394832)	archive/2026-09_literature_narratives/t_cell_markers.md	239	CD25 and CD127lo/- (Treg markers — CD25+CD127low defines regulatory T cells)		no	not found in Europe PMC full text: Tregs are typically identified by the expression of the transcription factor FoxP3 or the IL-2 receptor α-chain (CD25) [first 7 of 118 chars match; then: 're typically identified by the']	EV00260	2026-09-28
+EV00235		SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000121	unreviewed	T cell	CD25		supports	"""In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127"""	41394832	10.3389/fimmu.2025.1676937	PMC12695756	Kamran M et al. 2025			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 41394832)	archive/2026-09_literature_narratives/t_cell_markers.md	243	CD25 and CD127lo/- (Treg markers — CD25+CD127low defines regulatory T cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00236		SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000121	unreviewed	T cell	CD127		supports	"""In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127"""	41394832	10.3389/fimmu.2025.1676937	PMC12695756	Kamran M et al. 2025			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 41394832)	archive/2026-09_literature_narratives/t_cell_markers.md	243	CD25 and CD127lo/- (Treg markers — CD25+CD127low defines regulatory T cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00237		SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000121	unreviewed	T cell	CD127		supports	"""Expression of CD127, the α-chain of the IL‐7 receptor, is inversely correlated with the expression of hallmark Treg cell regulator FOXP3."""	41645582	10.1002/eji.70107	PMC12877429	Morgana F et al. 2026			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 41645582)	archive/2026-09_literature_narratives/t_cell_markers.md	248	CD25 and CD127lo/- (Treg markers — CD25+CD127low defines regulatory T cells)		no	not found in Europe PMC full text: Expression of CD127, the α-chain of the IL‐7 receptor, is inversely correlated with the expression of hallmark Treg cell regulator FOXP3. [first 26 of 137 chars match; then: '-chain of the IL‐7 receptor, i']	EV00261	2026-09-28
+EV00238		SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000121	unreviewed	T cell	CD25		supports	"""the CD4+CD25+CD127low/– population arguably contains a mixture of Treg cells with variable degrees of commitment to the Treg cell lineage."""	41645582	10.1002/eji.70107	PMC12877429	Morgana F et al. 2026			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 41645582)	archive/2026-09_literature_narratives/t_cell_markers.md	251	CD25 and CD127lo/- (Treg markers — CD25+CD127low defines regulatory T cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00239		SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000121	unreviewed	T cell	CD127		supports	"""the CD4+CD25+CD127low/– population arguably contains a mixture of Treg cells with variable degrees of commitment to the Treg cell lineage."""	41645582	10.1002/eji.70107	PMC12877429	Morgana F et al. 2026			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 41645582)	archive/2026-09_literature_narratives/t_cell_markers.md	251	CD25 and CD127lo/- (Treg markers — CD25+CD127low defines regulatory T cells)		yes	exact match in Europe PMC full text		2026-09-28
+EV00240		SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000121	unreviewed	T cell	CD25		supports	"""Tregs (FOXP3+CD25+), pTfh (CXCR5+PD1+)"""	41757944	10.1093/infdis/jiag115	PMC13127770	Nalubega M et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Comparative Study (PMID 41757944)	archive/2026-09_literature_narratives/t_cell_markers.md	258	CD25 and CD127lo/- (Treg markers — CD25+CD127low defines regulatory T cells)	Results section	yes	exact match in Europe PMC full text		2026-09-28
+EV00241		SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000121	unreviewed	T cell	CD25		supports	"""nonnaive CD4 T cells"" analyzed using ""FOXP3, CD45RA, CD25, CCR4, CCR6, CXCR5, CXCR3, and CD127"""	41757944	10.1093/infdis/jiag115	PMC13127770	Nalubega M et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Comparative Study (PMID 41757944)	archive/2026-09_literature_narratives/t_cell_markers.md	260	CD25 and CD127lo/- (Treg markers — CD25+CD127low defines regulatory T cells)	Methods	yes	exact match in Europe PMC full text		2026-09-28
+EV00242		SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000121	unreviewed	T cell	CD127		supports	"""nonnaive CD4 T cells"" analyzed using ""FOXP3, CD45RA, CD25, CCR4, CCR6, CXCR5, CXCR3, and CD127"""	41757944	10.1093/infdis/jiag115	PMC13127770	Nalubega M et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Comparative Study (PMID 41757944)	archive/2026-09_literature_narratives/t_cell_markers.md	260	CD25 and CD127lo/- (Treg markers — CD25+CD127low defines regulatory T cells)	Methods	yes	exact match in Europe PMC full text		2026-09-28
+EV00243			none_found	T cell	CD45RA		supports	"""CD3+/CD8−/CD4+/CCR7+/CD45RA+"""	26861911	10.1038/srep20686	PMC4748244	Finak G et al. 2016			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, N.I.H., Intramural|Research Support, Non-U.S. Gov't (PMID 26861911)	archive/2026-09_literature_narratives/t_cell_markers.md	283	CD45RA and CCR7 (T cell memory markers)	CD4 Naïve — Table 2	yes	exact match in Europe PMC full text		2026-09-28
+EV00244			none_found	T cell	CCR7		supports	"""CD3+/CD8−/CD4+/CCR7+/CD45RA+"""	26861911	10.1038/srep20686	PMC4748244	Finak G et al. 2016			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, N.I.H., Intramural|Research Support, Non-U.S. Gov't (PMID 26861911)	archive/2026-09_literature_narratives/t_cell_markers.md	283	CD45RA and CCR7 (T cell memory markers)	CD4 Naïve — Table 2	yes	exact match in Europe PMC full text		2026-09-28
+EV00245			none_found	T cell	CD45RA		supports	"""CD3+/CD8−/CD4+/CCR7+/CD45RA−"""	26861911	10.1038/srep20686	PMC4748244	Finak G et al. 2016			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, N.I.H., Intramural|Research Support, Non-U.S. Gov't (PMID 26861911)	archive/2026-09_literature_narratives/t_cell_markers.md	285	CD45RA and CCR7 (T cell memory markers)	CD4 Central Memory — Table 2	yes	exact match in Europe PMC full text		2026-09-28
+EV00246			none_found	T cell	CCR7		supports	"""CD3+/CD8−/CD4+/CCR7+/CD45RA−"""	26861911	10.1038/srep20686	PMC4748244	Finak G et al. 2016			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, N.I.H., Intramural|Research Support, Non-U.S. Gov't (PMID 26861911)	archive/2026-09_literature_narratives/t_cell_markers.md	285	CD45RA and CCR7 (T cell memory markers)	CD4 Central Memory — Table 2	yes	exact match in Europe PMC full text		2026-09-28
+EV00247			none_found	T cell	CD45RA		supports	"""CD3+/CD8−/CD4+/CCR7−/CD45RA+"""	26861911	10.1038/srep20686	PMC4748244	Finak G et al. 2016			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, N.I.H., Intramural|Research Support, Non-U.S. Gov't (PMID 26861911)	archive/2026-09_literature_narratives/t_cell_markers.md	287	CD45RA and CCR7 (T cell memory markers)	CD4 Effector — Table 2	yes	exact match in Europe PMC full text		2026-09-28
+EV00248			none_found	T cell	CCR7		supports	"""CD3+/CD8−/CD4+/CCR7−/CD45RA+"""	26861911	10.1038/srep20686	PMC4748244	Finak G et al. 2016			panel_or_method	curator (Alex, 2026-09-28): OMIP / standardization panel; PubMed publication type: Journal Article|Research Support, N.I.H., Extramural|Research Support, N.I.H., Intramural|Research Support, Non-U.S. Gov't (PMID 26861911)	archive/2026-09_literature_narratives/t_cell_markers.md	287	CD45RA and CCR7 (T cell memory markers)	CD4 Effector — Table 2	yes	exact match in Europe PMC full text		2026-09-28
+EV00249			none_found	T cell	CD45RA		supports	"""CD45RA and CCR7 – CD4+ T cells were divided into four maturation subsets"""	41376646	10.3389/fimmu.2025.1614461	PMC12685880	Starshinova A et al. 2025			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 41376646)	archive/2026-09_literature_narratives/t_cell_markers.md	293	CD45RA and CCR7 (T cell memory markers)		yes	exact match in Europe PMC full text		2026-09-28
+EV00250			none_found	T cell	CCR7		supports	"""CD45RA and CCR7 – CD4+ T cells were divided into four maturation subsets"""	41376646	10.3389/fimmu.2025.1614461	PMC12685880	Starshinova A et al. 2025			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 41376646)	archive/2026-09_literature_narratives/t_cell_markers.md	293	CD45RA and CCR7 (T cell memory markers)		yes	exact match in Europe PMC full text		2026-09-28
+EV00255			none_found	T cell	CD27		supports	"""Zole-expanded Vδ2 γδ T cells displayed a highly homogeneous effector memory (EM) phenotype (CD27−CD45RA−)"""	41727470	10.3389/fimmu.2026.1739493	PMC12920462	Kelm M et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 41727470)	archive/2026-09_literature_narratives/t_cell_markers.md	312	CD27 and CD28 (additional memory/effector T cell markers)		no	not found in Europe PMC full text: Zole-expanded Vδ2 γδ T cells displayed a highly homogeneous effector memory (EM) phenotype (CD27−CD45RA−) [first 96 of 105 chars match; then: '−CD45RA−)']	EV00262	2026-09-28
+EV00256		SOULCAP:SC000006|SOULCAP:SC000007|SOULCAP:SC000008|SOULCAP:SC000009|SOULCAP:SC000010	unreviewed	innate lymphoid cell	CD3		supports	"""Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes)"""	33300130	10.1002/eji.202048696	PMC8248192	Krabbendam et al 2021			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 33300130)			CD3 (required exclusion — separates ILC from T cells)	exact replacement for EV00128 (WebFetch paraphrase), copied from Europe PMC full text PMC8248192; approved by Alex 2026-09-28	yes	exact match in Europe PMC full text		2026-09-28
+EV00257			none_found	innate lymphoid cell	CD161		supports	"""we regularly detected small numbers of CD45+Lin–CD3–CD127+CD161+ cells (ie, bona fide ILCs"""	34363841	10.1016/j.jaci.2021.07.025	PMC9130781	Alkon et al 2022			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 34363841)			CD161 (NKR-P1; common ILC co-marker)	exact replacement for EV00129 (WebFetch paraphrase), copied from Europe PMC full text PMC9130781; approved by Alex 2026-09-28	yes	exact match in Europe PMC full text		2026-09-28
+EV00258			none_found	innate lymphoid cell	CD161		supports	"""CD161, which is known to be present on NK cells, NKT cells, and T cells,"" … ""is also expressed by human ILCs"""	34363841	10.1016/j.jaci.2021.07.025	PMC9130781	Alkon et al 2022			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 34363841)			CD161 (NKR-P1; common ILC co-marker)	exact replacement for EV00131 (WebFetch paraphrase), copied from Europe PMC full text PMC9130781; approved by Alex 2026-09-28	yes	exact match in Europe PMC full text		2026-09-28
+EV00259		SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000121	unreviewed	T cell	CD25		supports	"""are typically identified by the expression of the transcription factor FoxP3 or the IL-2 receptor α-chain (CD25)"" … ""the absence or low expression of the IL-7 receptor α-chain (CD127) has been proposed as a distinguishing marker for Tregs"""	41394832	10.3389/fimmu.2025.1676937	PMC12695756	Kamran M et al. 2025			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 41394832)			CD25 and CD127lo/- (Treg markers — CD25+CD127low defines regulatory T cells)	exact replacement for EV00233 (WebFetch paraphrase), copied from Europe PMC full text PMC12695756; approved by Alex 2026-09-28	yes	exact match in Europe PMC full text		2026-09-28
+EV00260		SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000121	unreviewed	T cell	CD127		supports	"""are typically identified by the expression of the transcription factor FoxP3 or the IL-2 receptor α-chain (CD25)"" … ""the absence or low expression of the IL-7 receptor α-chain (CD127) has been proposed as a distinguishing marker for Tregs"""	41394832	10.3389/fimmu.2025.1676937	PMC12695756	Kamran M et al. 2025			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 41394832)			CD25 and CD127lo/- (Treg markers — CD25+CD127low defines regulatory T cells)	exact replacement for EV00234 (WebFetch paraphrase), copied from Europe PMC full text PMC12695756; approved by Alex 2026-09-28	yes	exact match in Europe PMC full text		2026-09-28
+EV00261		SOULCAP:SC000109|SOULCAP:SC000110|SOULCAP:SC000111|SOULCAP:SC000112|SOULCAP:SC000113|SOULCAP:SC000114|SOULCAP:SC000121	unreviewed	T cell	CD127		supports	"""Expression of CD127, the α‐chain of the IL‐7 receptor, is inversely correlated with the expression of hallmark Treg cell regulator FOXP3"""	41645582	10.1002/eji.70107	PMC12877429	Morgana F et al. 2026			sorting_paper	proposed; PubMed publication type: Journal Article (PMID 41645582)			CD25 and CD127lo/- (Treg markers — CD25+CD127low defines regulatory T cells)	exact replacement for EV00237 (WebFetch paraphrase), copied from Europe PMC full text PMC12877429; approved by Alex 2026-09-28	yes	exact match in Europe PMC full text		2026-09-28
+EV00262			none_found	T cell	CD27		supports	"""Zole-expanded Vδ2 γδ T cells displayed a highly homogeneous effector memory (EM) phenotype (CD27-CD45RA-)"""	41727470	10.3389/fimmu.2026.1739493	PMC12920462	Kelm M et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article (PMID 41727470)			CD27 and CD28 (additional memory/effector T cell markers)	exact replacement for EV00255 (WebFetch paraphrase), copied from Europe PMC full text PMC12920462; approved by Alex 2026-09-28	yes	exact match in Europe PMC full text		2026-09-28
+EV00263			none_found	T cell	CD45RA		supports	"""Gating strategy identifying Tcm (Q1: CD4+ CD45RA− CCR7+) and Tem (Q4: CD4+ CD45RA− CCR7−)"""	41928597	10.1002/eji.70177	PMC13047356	Gholizadeh F et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 41928597)			CD45RA and CCR7 (T cell memory markers)	Figure 4 legend; replaces removed EV00251 (WebFetch splice of two definitions); approved by Alex 2026-09-28	yes	"exact match in Europe PMC full text; the Results link the two definitions: ""Memory Th cells were gated as CD45RA−, corresponding to CD45RO+ memory cells as previously validated"" (PMC13047356, Results)."		2026-09-28
+EV00264			none_found	T cell	CCR7		supports	"""Gating was applied to CD3+ CD4+ CD45RO+ CCR7+ cells for Tcm and CD3+ CD4+ CD45RO+ CCR7− cells for Tem."""	41928597	10.1002/eji.70177	PMC13047356	Gholizadeh F et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 41928597)			CD45RA and CCR7 (T cell memory markers)	Materials and Methods, Flow Cytometry; replaces removed EV00252 (WebFetch splice of two definitions); approved by Alex 2026-09-28	yes	"exact match in Europe PMC full text; the Results link the two definitions: ""Memory Th cells were gated as CD45RA−, corresponding to CD45RO+ memory cells as previously validated"" (PMC13047356, Results)."		2026-09-28
+EV00265			none_found	T cell	CCR7		supports	"""Gating strategy identifying Tcm (Q1: CD4+ CD45RA− CCR7+) and Tem (Q4: CD4+ CD45RA− CCR7−)"""	41928597	10.1002/eji.70177	PMC13047356	Gholizadeh F et al. 2026			application_study	curator (Alex, 2026-09-28): application_study; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 41928597)			CD45RA and CCR7 (T cell memory markers)	Figure 4 legend; CCR7 row for the same quote as EV00263; replaces removed EV00251/EV00252 (WebFetch splice of two definitions); approved by Alex 2026-09-28	yes	"exact match in Europe PMC full text; the Results link the two definitions: ""Memory Th cells were gated as CD45RA−, corresponding to CD45RO+ memory cells as previously validated"" (PMC13047356, Results)."		2026-09-28
diff --git a/literature/evidence_unplaced.tsv b/literature/evidence_unplaced.tsv
new file mode 100644
index 0000000..f6ad6b5
--- /dev/null
+++ b/literature/evidence_unplaced.tsv
@@ -0,0 +1,16 @@
+source_file	source_line	section	reason	quote	citation
+archive/2026-09_literature_narratives/gdt_mait_markers.md	16	CD3 and TCRγδ (required — pan-γδ T cell markers)	section names several markers and the quote mentions none of them	"""As γδ T cells are less likely to cause graft-versus-host disease (GvHD) than their αβ counterparts"""	Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w)
+archive/2026-09_literature_narratives/gdt_mait_markers.md	19	CD3 and TCRγδ (required — pan-γδ T cell markers)	section names several markers and the quote mentions none of them	"""γδ T cells are a highly versatile immune lineage involved in host defense and homeostasis, but questions remain around their heterogeneity, precise function and role during health and disease."""	Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w)
+archive/2026-09_literature_narratives/gdt_mait_markers.md	28	γδ T cell subsets — overview (three Vδ populations)	section heading names no marker	"""The γδ T cells are typically classified into three primary subsets based on their δ chain usage: Vδ1+, Vδ2+, and Vδ3+"""	Laub et al. 2025 (PMID:40746558; DOI:10.3389/fimmu.2025.1618393)
+archive/2026-09_literature_narratives/gdt_mait_markers.md	31	γδ T cell subsets — overview (three Vδ populations)	section heading names no marker	"""Traditionally, γδ T cells existed as three populations based on δ chain expression. Vδ1 cells predominantly reside in mucosal sites and epithelia, while Vδ2 cells comprise 50–90% of γδ T cells in the circulation."""	Karunathilaka et al. 2022 (PMID:35193613; DOI:10.1186/s12979-022-00269-w)
+archive/2026-09_literature_narratives/gdt_mait_markers.md	120	CD3 and TCRαβ (required positive — MAIT cells are αβ T cells)	section names several markers and the quote mentions none of them	"""Human MAIT cells express an invariant TCRα chain comprising TRAV1-2 joined to TRAJ33 with a restricted TCRβ chain TRBV6 and TRBV20."""	Azad et al. 2025 (PMID:41511352; DOI:10.3390/cells15010069)
+archive/2026-09_literature_narratives/gdt_mait_markers.md	126	CD3 and TCRαβ (required positive — MAIT cells are αβ T cells)	section names several markers and the quote mentions none of them	"""MAIT cells belong to a population of 'unconventional' T cells which also include gamma delta (gd) T cells and invariant natural killer (iNKT) cells."""	Azad et al. 2025 (PMID:41511352; DOI:10.3390/cells15010069)
+archive/2026-09_literature_narratives/ilc_markers.md	142	Lineage exclusion markers (CD14, CD33, CD64, CD34, CD19, CD15, CD66b, CD123)	section names several markers and the quote mentions none of them	"""NK cells were excluded by adding anti-CD94 and anti-CD16 antibodies to the lineage cocktail."""	Alkon et al 2022 (PMID:34363841; DOI:10.1016/j.jaci.2021.07.025)
+archive/2026-09_literature_narratives/inkt_markers.md	117	Distinction: iNKT vs Type II NKT (vNKT)	section heading names no marker	"""NKT cells are subclassified into invariant NKT (iNKT) cells and type II NKT (T2NKT) cells according to their TCR specificity."""	Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473)
+archive/2026-09_literature_narratives/inkt_markers.md	120	Distinction: iNKT vs Type II NKT (vNKT)	section heading names no marker	"""iNKT cells possess an invariant TCR Vα24-Jα18α chain paired with TCR Vβ11, which mainly responds to α-galactosylceramide glycopeptide (αGalCer)."""	Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473)
+archive/2026-09_literature_narratives/inkt_markers.md	123	Distinction: iNKT vs Type II NKT (vNKT)	section heading names no marker	"""By contrast, T2NKT cells utilize different TCR rearrangements to recognize diverse lipids."""	Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473)
+archive/2026-09_literature_narratives/inkt_markers.md	126	Distinction: iNKT vs Type II NKT (vNKT)	section heading names no marker	"""NKT cells are non-conventional T cells that share common features with NK cells."""	Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473)
+archive/2026-09_literature_narratives/inkt_markers.md	131	Distinction: iNKT vs Type II NKT (vNKT)	section heading names no marker	"""T2NKT cells were identified as CD3+ CD56+ CD161+ TCR-γδ- TCRVα7.2- and TCRVα24- cells."""	Zhou et al. 2022 (PMID:35720369; DOI:10.3389/fimmu.2022.898473)
+archive/2026-09_literature_narratives/t_cell_markers.md	6		no attribution line before the next heading	**Extraction note.** Quotes below were obtained via the WebFetch web-content extraction tool, which uses an AI model to copy text from the fetched page. Where the extracted text is not a clean sentence (e.g. gating strings reproduced from a table), the quote is presented exactly as returned and the likely source (table, figure legend, methods) is noted. Any suspected OCR/ extraction artefacts are flagged inline.	
+archive/2026-09_literature_narratives/t_cell_markers.md	55	CD4 and CD8 (lineage markers for T helper and cytotoxic T cells)	section names several markers and the quote mentions none of them	"""cluster 9 was defined as Th2 cells, as they highly expressed CCR4 but did not express biomarkers of Tfh cells (CXCR5, PD-1), Th1 cells (CXCR3), Th17 cells (CCR6), and Treg cells (CD25, Foxp3)"""	Zhu H et al. 2026 (PMID: 41826820; DOI: 10.1186/s10020-026-01455-y; PMC: PMC13101149)
+archive/2026-09_literature_narratives/t_cell_markers.md	65	TCRαβ vs TCRγδ (distinguishing αβ from γδ T cells)	section names several markers and the quote mentions none of them	"""Purity of PHA- and Zole- expanded αβ and γδ T-cell cultures and MACS-isolated T-cell populations were assessed by flow cytometry using anti-CD3, CD4, CD8, γδ TCR, and αβ TCR monoclonal antibodies."""	Kelm M et al. 2026 (PMID: 41727470; DOI: 10.3389/fimmu.2026.1739493; PMC: PMC12920462)
diff --git a/literature/removed_evidence.tsv b/literature/removed_evidence.tsv
new file mode 100644
index 0000000..918c19b
--- /dev/null
+++ b/literature/removed_evidence.tsv
@@ -0,0 +1,5 @@
+removed_on	reason	evidence_id	subject_id	candidate_subject_ids	candidate_status	cell_type_label	marker_token	level	supports_or_contradicts	quote	pmid	doi	pmcid	first_author_year	species	tissue	source_type	source_type_basis	source_file	source_line	section	notes	verified	verification_note	superseded_by	added_on
+2026-09-28	WebFetch extraction appended 'CD27, CD28, CD45RA, CCR7' to a real sentence ('...memory−subset gates (Supplementary Table 1, gating strategy depicted in Supplementary Figures 1, 2).'); the paper only lists CD27/CD28 in its antibody panel. Removed on Alex's decision.	EV00253			none_found	T cell	CD27		supports	"""For all analyses, cells were gated on singlets and live cells defined based on scatter properties, followed by CD3+ lymphocytes and subsequent αβ/γδ and memory−subset gates"" with markers including ""CD27, CD28, CD45RA, CCR7"" used to distinguish naïve, central memory (CM), and effector memory (EM) subsets."	41727470	10.3389/fimmu.2026.1739493	PMC12920462	Kelm M et al. 2026			other	proposed; PubMed publication type: Journal Article (PMID 41727470)	archive/2026-09_literature_narratives/t_cell_markers.md	307	CD27 and CD28 (additional memory/effector T cell markers)		no	not found in Europe PMC full text: CD27, CD28, CD45RA, CCR7 [first 14 of 24 chars match; then: '45RA, CCR7']		2026-09-28
+2026-09-28	WebFetch extraction appended 'CD27, CD28, CD45RA, CCR7' to a real sentence ('...memory−subset gates (Supplementary Table 1, gating strategy depicted in Supplementary Figures 1, 2).'); the paper only lists CD27/CD28 in its antibody panel. Removed on Alex's decision.	EV00254			none_found	T cell	CD28		supports	"""For all analyses, cells were gated on singlets and live cells defined based on scatter properties, followed by CD3+ lymphocytes and subsequent αβ/γδ and memory−subset gates"" with markers including ""CD27, CD28, CD45RA, CCR7"" used to distinguish naïve, central memory (CM), and effector memory (EM) subsets."	41727470	10.3389/fimmu.2026.1739493	PMC12920462	Kelm M et al. 2026			other	proposed; PubMed publication type: Journal Article (PMID 41727470)	archive/2026-09_literature_narratives/t_cell_markers.md	307	CD27 and CD28 (additional memory/effector T cell markers)		no	not found in Europe PMC full text: CD27, CD28, CD45RA, CCR7 [first 14 of 24 chars match; then: '45RA, CCR7']		2026-09-28
+2026-09-28	WebFetch extraction spliced two definitions into one sentence that is not in the paper: CD45RA− (Figure 4 legend, Results) and CD45RO+ (Methods). Removed on Alex's decision; exact rows for each definition were added instead.	EV00251			none_found	T cell	CD45RA		supports	"""CD4+ CD45RA− CCR7+ cells for Tcm and CD3+ CD4+ CD45RO+ CCR7− cells for Tem"""	41928597	10.1002/eji.70177	PMC13047356	Gholizadeh F et al. 2026			other	proposed; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 41928597)	archive/2026-09_literature_narratives/t_cell_markers.md	299	CD45RA and CCR7 (T cell memory markers)		no	the paper uses both definitions: Methods (Flow Cytometry) gate Tcm/Tem as CD3+ CD4+ CD45RO+ CCR7+/−, while the Figure 4 legend and Results use CD4+ CD45RA− CCR7+/−, and the Results state 'Memory Th cells were gated as CD45RA−, corresponding to CD45RO+ memory cells'. The WebFetch quote splices the two into one sentence that is not in the paper; replacement pending review. | earlier check: not found in Europe PMC full text: CD4+ CD45RA− CCR7+ cells for Tcm and CD3+ CD4+ CD45RO+ CCR7− cells for Tem [first 18 of 74 chars match; then: ' cells for Tcm and CD3+ CD4+ C']		2026-09-28
+2026-09-28	WebFetch extraction spliced two definitions into one sentence that is not in the paper: CD45RA− (Figure 4 legend, Results) and CD45RO+ (Methods). Removed on Alex's decision; exact rows for each definition were added instead.	EV00252			none_found	T cell	CCR7		supports	"""CD4+ CD45RA− CCR7+ cells for Tcm and CD3+ CD4+ CD45RO+ CCR7− cells for Tem"""	41928597	10.1002/eji.70177	PMC13047356	Gholizadeh F et al. 2026			other	proposed; PubMed publication type: Journal Article|Research Support, Non-U.S. Gov't (PMID 41928597)	archive/2026-09_literature_narratives/t_cell_markers.md	299	CD45RA and CCR7 (T cell memory markers)		no	the paper uses both definitions: Methods (Flow Cytometry) gate Tcm/Tem as CD3+ CD4+ CD45RO+ CCR7+/−, while the Figure 4 legend and Results use CD4+ CD45RA− CCR7+/−, and the Results state 'Memory Th cells were gated as CD45RA−, corresponding to CD45RO+ memory cells'. The WebFetch quote splices the two into one sentence that is not in the paper; replacement pending review. | earlier check: not found in Europe PMC full text: CD4+ CD45RA− CCR7+ cells for Tcm and CD3+ CD4+ CD45RO+ CCR7− cells for Tem [first 18 of 74 chars match; then: ' cells for Tcm and CD3+ CD4+ C']		2026-09-28
diff --git a/literature/reviews/README.md b/literature/reviews/README.md
new file mode 100644
index 0000000..18b7222
--- /dev/null
+++ b/literature/reviews/README.md
@@ -0,0 +1,22 @@
+# literature/reviews/
+
+Review papers used as evidence, starting with NK cells, then other cell types.
+The index is [reviews.tsv](reviews.tsv), one row per review:
+
+| Column | Meaning |
+|---|---|
+| `citation` | First author, year, short title |
+| `pmid`, `doi`, `pmcid` | Identifiers, looked up (never typed from memory) |
+| `cell_types_covered` | `\|`-separated cell-type families, e.g. `NK cell\|ILC` |
+| `open_access` | `yes` or `no` |
+| `added_on` | Date added (YYYY-MM-DD) |
+| `notes` | Anything a reader should know, e.g. which sections are relevant |
+
+Rules:
+
+- **Do not commit paywalled PDFs.** Record the reference only.
+- Open-access PDFs may be kept here if they are small, but the identifiers are
+  enough: `soulcap-evidence verify` fetches full text from Europe PMC.
+- Quotes taken from a review go into [../evidence.tsv](../evidence.tsv) with
+  `source_type = review`, like any other evidence, so they show up in the
+  per-cell-type and per-marker views.
diff --git a/literature/reviews/reviews.tsv b/literature/reviews/reviews.tsv
new file mode 100644
index 0000000..12c0bdf
--- /dev/null
+++ b/literature/reviews/reviews.tsv
@@ -0,0 +1 @@
+citation	pmid	doi	pmcid	cell_types_covered	open_access	added_on	notes
diff --git a/marker_mappings/README.md b/marker_mappings/README.md
new file mode 100644
index 0000000..bfbd042
--- /dev/null
+++ b/marker_mappings/README.md
@@ -0,0 +1,86 @@
+# marker_mappings/
+
+How each marker token in the SOULCAP sheet (e.g. `CD56`, `CCR7`) is linked to a
+protein, and when that link is trusted for matching. All files here are tracked
+and curated; none are in the gitignored `data/` cache.
+
+| File | What it is | Produced by |
+|---|---|---|
+| [marker_tokens.csv](marker_tokens.csv) | Every distinct marker token used in the sheet's four marker columns | `uv run soulcap-tokens` (from `data/marker_combinations.csv`) |
+| [marker_protein_gene.csv](marker_protein_gene.csv) | **The token → PRO registry.** One row per (token, protein): PRO ID, UniProt ID, gene symbol, HGNC/NCBI IDs, method, confidence, notes. 75 rows | `uv run soulcap-map`, then hand-corrected |
+| [marker_resolution.tsv](marker_resolution.tsv) | **The resolution policy.** One row per token: is it a single protein, and may the matcher treat it as that PRO term? 73 rows | Hand-curated |
+| [pr_uniprot_overrides.csv](pr_uniprot_overrides.csv) | Manual PRO → human UniProt links where the automatic lookup fails | Hand-curated; read by `soulcap-hgnc` |
+
+## How the registry, the policy and the audit relate
+
+Think of it as three questions asked in order.
+
+1. **What protein does this token name?**
+   `marker_protein_gene.csv` answers this. It records the best available PRO,
+   UniProt and gene IDs for each token, including awkward cases (a family, a
+   complex, a tetramer reagent) with a note. It is a lookup table, not a
+   judgement about whether the ID is safe to use.
+
+2. **Is it safe to treat the token as exactly that protein when matching?**
+   `marker_resolution.tsv` answers this, one row per token:
+   - `representation`: `single_protein`, `protein_family`, `complex`,
+     `reagent_gate` (e.g. a tetramer), or `unresolved`.
+   - `protein_resolution`: `allow` or `withhold`. Only a `single_protein`
+     token with exactly one PRO ID may be `allow`. Everything else is
+     `withhold`: the matcher then compares the token only by name, never by
+     protein identity.
+   - `rationale` and `source_ref`: why.
+   - For `withhold` rows only: `failure_category` (one of
+     `carbohydrate_epitope`, `lipid_antigen_reagent`, `multimer_reagent`,
+     `multi_gene_product`, `protein_complex`, `protein_family`,
+     `source_syntax_artifact`, `needs_curator`), `specific_rationale` (the
+     specific reason, with the PRO/GO IDs checked), `evidence_level`
+     (`ontology_checked`, `source_traced` or `registry_note_only`) and
+     `next_action`. These columns explain a decision; they don't change it,
+     and they are not part of the fingerprint.
+
+   Today 51 tokens are `allow` and 22 are `withhold` (9 unresolved, 6 family,
+   4 complex, 3 reagent gate). CD3 and CD8 alone block most cell types;
+   the options for them are in
+   [docs/marker_resolution.md](../docs/marker_resolution.md#decisions-for-david).
+   Eight withheld tokens are fragments of spaced names split by the
+   tokenizer, not markers in their own right: TCR, V, delta, delta1 and
+   gamma (from names like `TCR V delta 1+`), and Tetramer, MR1 and
+   CD1d-a-GalCer (from `MR1 Tetramer+` and `CD1d-a-GalCer Tetramer+`).
+
+3. **What difference does the policy make?**
+   [reports/marker_resolution_audit.md](../reports/marker_resolution_audit.md)
+   (from `uv run soulcap-resolution-audit`) compares matching with and without
+   the policies: which tokens gain or lose links to CL marker axioms, and how
+   each mapping's evidence changes. It reads the two files above; it never
+   edits them.
+
+The policy is used only when a command is given `--marker-map
+marker_mappings/marker_protein_gene.csv`. Without that flag the matcher runs in
+its default (legacy) mode, which uses the CD synonyms in CL's own axioms. See
+[docs/marker_resolution.md](../docs/marker_resolution.md) for the full rules.
+
+## The `registry_sha256` column (the long numbers on the right)
+
+Each policy row stores a SHA-256 fingerprint of the registry rows it was
+written for. It is computed over every column of every
+`marker_protein_gene.csv` row with that token (case-insensitive; `TCRVA24` and
+`VB11` each have two rows).
+
+If anyone later edits those registry rows, even a note, the fingerprint no
+longer matches and every `--marker-map` command stops with
+`Stale marker policy: <token>; review registry changes`. That is deliberate: a
+policy that said "CD16 is safe" should not silently carry over to a changed
+CD16 entry.
+
+After editing the registry:
+
+1. Re-read the policy row for each changed token and update it if needed.
+2. Only then recompute its fingerprint:
+
+   ```bash
+   uv run python -c "import csv,sys; from soulcap_cl_mapping.marker_resolution import signature; t=sys.argv[1].upper(); rows=[r for r in csv.DictReader(open('marker_mappings/marker_protein_gene.csv',encoding='utf-8-sig',newline='')) if r['marker_token'].strip().upper()==t]; print(signature(rows))" CD16
+   ```
+
+Do not refresh fingerprints just to make the error go away; that defeats the
+review step.
diff --git a/marker_mappings/marker_resolution.tsv b/marker_mappings/marker_resolution.tsv
index ddfed65..f0b9ded 100644
--- a/marker_mappings/marker_resolution.tsv
+++ b/marker_mappings/marker_resolution.tsv
@@ -1,74 +1,74 @@
-marker_token	representation	protein_resolution	rationale	source_ref	registry_sha256
-CCR4	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CCR4	92a259ce694c97036005ca94363ab60cdf2c07dd4465f136ad8373345571fbeb
-CCR6	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CCR6	dd41080790bdb3b9cc1b258f3b4f17024162a4bd7af398d26e6065806c6f016b
-CD10	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD10	189b99e3ca24d72b63581e906db05fdce2427b67169f38465e976cd8a40ec9c4
-CD117	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD117	4bf76b64c7da8abcf0397922b199fab9771a83005c85c0af5815d29b15b9d735
-CD11C	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD11c	927410701d8301054de6eabf3e66edda2805061fd34d5c566cfea49bbfbb0931
-CD123	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD123	af15c6e28315d5d5b091949f3d604db639bfd89e01721e916fb8d530091daa2b
-CD127	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD127	0fe9974e9d75510578b02748379254855e3feeab2e16248cdedeb1c3ee504d65
-CD138	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD138	9cc54f5fcd78013f8e7c99eb32410d8e55ae85c7b25dac314f095f19c736048c
-CD14	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD14	d58b59b3d3d8e8446ef2be8f99beebb8ddbda1f788130737b4a20f57382408d9
-CD141	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD141	427b96ef42d73b5bb5411b83fb6a5a9c9d62bd861360fc509f5f9b910657fcba
-CD15	unresolved	withhold	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#CD15	f325259074857563bb021becc9b5ec90937ba529aed5be7c5c58e854c34c823d
-CD16	unresolved	withhold	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#CD16	a7a9cad253db0e9a36b0bf2b5efa04ded5e314c01b3166d19623519f6a3f43e7
-CD161	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD161	a00a3bff850030588e3dec0bf6bb6a357094e15ad9340e49e3b9b82b74bc17b2
-CD172A	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD172a	8aa1edf51a28be1cbf8a85aac530a28a6eeaeb63f743635e3ad470650a7a3faa
-CD183	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD183	2c4d474ae9950ae9e6bbaa9c000f9b7859f940dea922176c90a82ce5caf63c83
-CD185	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD185	90cc4084aacbba0d63a1794fa93e45dfff222d1cdb7d8765bb91fd1612410251
-CD19	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD19	cfefbefa4fc565abb7aab6080b73ef73c7fc20a30204a80b233dc73c8bef9db1
-CD193	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD193	428812131627dc71e9536828d95814c7b70f075cf00d367fba9ae851189ef70c
-CD194	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD194	d770a2f6824de9ca6b8be94f908377c2309cfb12e5be7a395df525e31ca2148c
-CD196	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD196	ba5d384cfa94446a14a33cc4a126bc2fb759bac654a6c6a261f8e4bf8add84c9
-CD198	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD198	fd160c33da0e4004c60a00f67731f336619293a663aec372b1ff5c01eb82219a
-CD1C	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD1c	ec9943c17324c73a53427964a51c264e9b86e1a6755eb850c1bc943a8126f554
-CD1D-A-GALCER	reagent_gate	withhold	Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.	marker_mappings/marker_protein_gene.csv#CD1d-a-GalCer	ca0282e7ce4edd98e9c762657870f3556de86befddf8c33100fbbfcb7a800f01
-CD20	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD20	0666c2a713f30454576d62dedecb049fdca0acecbd50bc08804116bd160f7c25
-CD21	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD21	e60e1a4490685b99e9674d65469bacd24a97d6dd0950210f7a3c7453d86579b1
-CD24	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD24	e1cdc47dfa67d7f67019de006ba704a9d2bf0b13d04f0bbed037e8fede953bec
-CD25	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD25	5951ea552f766b80cf59b979f41ba02de31750f5c0f6fbb1b21e55b67f3b82ab
-CD27	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD27	e2bab281c9ec4622d3a2658385860ce789df4f4577a7bebb3f73976a9fcd82ab
-CD294	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD294	4bdfb21b9889754554aaaeb73cfaed4816ac01c39857fb81b064b61f3bee8cc7
-CD3	unresolved	withhold	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#CD3	4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0
-CD303	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD303	d098d8dc137622844570ce28ad2dd380e9c669d67864e5248c937e431e2bb6c3
-CD33	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD33	1de2ca7ac6bfd4daca770841d698b5635586630584ac1a6d8fd8f16537ea3e90
-CD34	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD34	ee16d3e65d632814251ced067773c95046ec569930b3dc4d22c9da1d9409c640
-CD38	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD38	a9443ead57bee08f430cd3737fc54621c649a971ee7e05530042406994fbbfb3
-CD4	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD4	0f768b0ba2691f0fdc2c64d396b8f89f5211d05b6773ee5dcfa2bb41bbff319c
-CD45	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD45	c2144181df41b433bc4c8b7710bfda4122607d87ade0ed2d33ff4865a4b3c49d
-CD56	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD56	b51d188a6fdfada2e42569c7553233a5f7625ae2976ba24724e84a95db6ceff1
-CD57	reagent_gate	withhold	Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.	marker_mappings/marker_protein_gene.csv#CD57	2cfc4413ee4844d8bb2c3bfddeb2ed6704073cfdefe57381f38270aaee40d080
-CD64	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD64	46571d20d73b5ef77ec5c7be28beda3c94890e33c17faf4904e285b294e2db47
-CD66B	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD66b	42305fda07fd524b609244d79f171598c6b1b1b879466170789a47c30bc9033a
-CD8	unresolved	withhold	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#CD8	846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a
-CXCR3	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CXCR3	6620e8f0b53cd1ecfa795de32156537b7835bfbfb2e7a46195c7b9a4a6d21507
-CXCR5	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CXCR5	edfd11e18c37d49e6723778e16efd44bf98358fa84f3882908d38fd87bcb79c1
-FCER1A	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#FceR1a	0ffb585d4dc904f1d78456c5f8ae18e3d3c7e53e0a0addf4306a7654eec5884a
-HLA-DR	complex	withhold	Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.	marker_mappings/marker_protein_gene.csv#HLA-DR	c7b6d01f0a4eaffefce1df3c4a53407d958d2f032e03a9ce22f0354adbdded3c
-IFNG	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IFNg	984c2f8cfe641da02a4d92ac78be3e3595127852ff7b8d67acacc0ae3361b8ba
-IL-13	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-13	0fea4e3f83d693c4bb37136de36e615363c0203996bd448c7b9c442f33cda6be
-IL-17A	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-17a	92fcb16f42e797476ce20b25717efcfa123fc60b9e8e0f979c01aefecba1fe2e
-IL-4	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-4	b73d688d701631fa8fe4c1db97221effb5ee895dad8fec7fdf4b77373958ee3c
-IL-5	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-5	9359347c3979d2efe87eed401c1bab949de52f4c187ebecafa6336c6327a25cd
-IL-9	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-9	9894867ba02520d0af6c0bf4858b55237d8a74be1be3dadaf0721b3a768ab686
-IGA	protein_family	withhold	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgA	61ac45fc138bab46fc31d71e42363d20de18a9585ff4717fb02702cbb03c6685
-IGD	protein_family	withhold	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgD	e4a5f79157c47b9a0e3fccb6d6eb144d50c93d7fb5f71224bd825f3e09adfb52
-IGE	protein_family	withhold	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgE	67b95e398fb1095e4c4a380091f0dae23dec9025456defdd9d0f5f254740da2e
-IGG	protein_family	withhold	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgG	c51e1dd6ae671fd9db387be6d0a26fdce6645e0f6a00d14891c0922708a941e7
-IGM	protein_family	withhold	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgM	fc17667826dd44b6b08bd4cb257f3d4fa23fdbf477c3da79386cb427b0d2f88d
-MR1	unresolved	withhold	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#MR1	96c5bf22b0be1d144cf60f175968b19c1485c64c4866d4a109f636a9c9af703d
-TCR	protein_family	withhold	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#TCR	9a617aa9a766194134020d7afa5feca696fc92cb187377eb72b2bb326d40cae7
-TCRVA24	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVa24	f81c80eeaa4d2de919813822e062fe2e4210b8a025bd76ebbad546bdd0936315
-TCRVA24-JA18	complex	withhold	Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.	marker_mappings/marker_protein_gene.csv#TCRVa24-Ja18	aad1afeeb19ea59d1c85741576656d0bf629f1500ac86d389d008e5adc327020
-TCRVA7.2	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVa7.2	1917c912d25db47ddf31fdee753f0093f18dfb1fcf080f5a2dcc9a53cdd490a5
-TCRVB11	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVb11	3b0361d975e31467580067f5d17823f53d425f9d2b5ef44745fee1aba08ca941
-TCRVD2	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVd2	5fb0b153ecc148621ec7c97ffea4618dcaf12f3f62d1642acfb303c5179ef2ec
-TCRVG9	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVg9	9318391135642e811b2781de7a9be4cc58f52c5f21dbfe8a0d316f3619f245f1
-TCRAB	complex	withhold	Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.	marker_mappings/marker_protein_gene.csv#TCRab	db65f2afbe24e19148fe8039a5a7df5983c5e9d0963d9cff9dec278958e33382
-TCRGD	complex	withhold	Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.	marker_mappings/marker_protein_gene.csv#TCRgd	49ec8f76a1338a63effb3e88e3c748f97f2753861e47ad476c1f4a96384b40ec
-TETRAMER	reagent_gate	withhold	Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.	marker_mappings/marker_protein_gene.csv#Tetramer	2f3894386ee2918f58d53b858eebc8e09729f16699a8f9d6faab2d5900495227
-V	unresolved	withhold	No PRO identity recorded; possible source artifact or unresolved marker requires clarification.	marker_mappings/marker_protein_gene.csv#V	610b267c4ba493d65f1528fb008a91bcab513fe39cd039617f4ba0313b50fa61
-VB11	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#VB11	6642023972a293e8a24efa26bb504964bc55c6f68d25a2186fd5609b89465e9f
-VD1	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#Vd1	adcc38bd179456a5c30cbddcb322a4cec7c64ca04f5c0f5ca79aef2703ee25fc
-DELTA	unresolved	withhold	No PRO identity recorded; possible source artifact or unresolved marker requires clarification.	marker_mappings/marker_protein_gene.csv#delta	83aed236bb5fcdc28afafd651c50af0e2bc053b7d9f64f979e47e39e66751b5e
-DELTA1	unresolved	withhold	No PRO identity recorded; possible source artifact or unresolved marker requires clarification.	marker_mappings/marker_protein_gene.csv#delta1	5b366a2c0a5c2f3a19355bb66e4ad0f88c172aa901c577aa9b16acff92294995
-GAMMA	unresolved	withhold	No PRO identity recorded; possible source artifact or unresolved marker requires clarification.	marker_mappings/marker_protein_gene.csv#gamma	dc9b95fd067723b54cfdb2e4fcf8948e571b2dfc83b0fa6dc407a4bcf6f402be
+marker_token	representation	protein_resolution	rationale	source_ref	registry_sha256	failure_category	specific_rationale	evidence_level	next_action
+CCR4	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CCR4	92a259ce694c97036005ca94363ab60cdf2c07dd4465f136ad8373345571fbeb				
+CCR6	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CCR6	dd41080790bdb3b9cc1b258f3b4f17024162a4bd7af398d26e6065806c6f016b				
+CD10	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD10	189b99e3ca24d72b63581e906db05fdce2427b67169f38465e976cd8a40ec9c4				
+CD117	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD117	4bf76b64c7da8abcf0397922b199fab9771a83005c85c0af5815d29b15b9d735				
+CD11C	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD11c	927410701d8301054de6eabf3e66edda2805061fd34d5c566cfea49bbfbb0931				
+CD123	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD123	af15c6e28315d5d5b091949f3d604db639bfd89e01721e916fb8d530091daa2b				
+CD127	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD127	0fe9974e9d75510578b02748379254855e3feeab2e16248cdedeb1c3ee504d65				
+CD138	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD138	9cc54f5fcd78013f8e7c99eb32410d8e55ae85c7b25dac314f095f19c736048c				
+CD14	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD14	d58b59b3d3d8e8446ef2be8f99beebb8ddbda1f788130737b4a20f57382408d9				
+CD141	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD141	427b96ef42d73b5bb5411b83fb6a5a9c9d62bd861360fc509f5f9b910657fcba				
+CD15	unresolved	withhold	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#CD15	f325259074857563bb021becc9b5ec90937ba529aed5be7c5c58e854c34c823d	carbohydrate_epitope	CD15 antibodies detect the Lewis X (SSEA-1) carbohydrate, not a protein. The registry PRO ID (PR:000001456) is FUT4, the fucosyltransferase that makes it; PRO lists CD15 as an exact synonym of FUT4 and CL uses FUT4 in 8 asserted CD15 axioms. Possible CHEBI representation: CHEBI:62287 (Gal-(1->4)-[Fuc-(1->3)]-GlcNAc), structural match to be confirmed.	ontology_checked	leave withheld; propose CL/PRO issue on CD15 = FUT4
+CD16	unresolved	withhold	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#CD16	a7a9cad253db0e9a36b0bf2b5efa04ded5e314c01b3166d19623519f6a3f43e7	multi_gene_product	Human CD16 is two genes: FCGR3A (CD16a, PR:000001484) and FCGR3B (CD16b, PR:000001485). The registry and CL use PR:000001483, which PRO defines as the product of the mouse Fcgr3 gene or a 1:1 ortholog, so it does not clearly cover either human gene. OMIP-069 uses clone 3G8, which binds both CD16a and CD16b (PMC12606087). CD16 is mostly used in the shared exclusion panel (CD15-|CD66b-) CD16-, which mirrors SOULCAP's CD16hi neutrophil definition; neutrophils carry CD16b, so CD16a alone would misrepresent exclusion gates.	ontology_checked	ask David (likely lacks CD16a and lacks CD16b for exclusion); propose CL issue on PR:000001483 for human cell types
+CD161	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD161	a00a3bff850030588e3dec0bf6bb6a357094e15ad9340e49e3b9b82b74bc17b2				
+CD172A	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD172a	8aa1edf51a28be1cbf8a85aac530a28a6eeaeb63f743635e3ad470650a7a3faa				
+CD183	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD183	2c4d474ae9950ae9e6bbaa9c000f9b7859f940dea922176c90a82ce5caf63c83				
+CD185	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD185	90cc4084aacbba0d63a1794fa93e45dfff222d1cdb7d8765bb91fd1612410251				
+CD19	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD19	cfefbefa4fc565abb7aab6080b73ef73c7fc20a30204a80b233dc73c8bef9db1				
+CD193	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD193	428812131627dc71e9536828d95814c7b70f075cf00d367fba9ae851189ef70c				
+CD194	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD194	d770a2f6824de9ca6b8be94f908377c2309cfb12e5be7a395df525e31ca2148c				
+CD196	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD196	ba5d384cfa94446a14a33cc4a126bc2fb759bac654a6c6a261f8e4bf8add84c9				
+CD198	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD198	fd160c33da0e4004c60a00f67731f336619293a663aec372b1ff5c01eb82219a				
+CD1C	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD1c	ec9943c17324c73a53427964a51c264e9b86e1a6755eb850c1bc943a8126f554				
+CD1D-A-GALCER	reagent_gate	withhold	Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.	marker_mappings/marker_protein_gene.csv#CD1d-a-GalCer	ca0282e7ce4edd98e9c762657870f3556de86befddf8c33100fbbfcb7a800f01	lipid_antigen_reagent	First half of CD1d-a-GalCer Tetramer+ (rows 60, 76-80, 108, 110-115): CD1d loaded with the lipid alpha-galactosylceramide, a reagent that stains iNKT TCRs. Not a protein marker on the cell.	source_traced	leave withheld; report spacing to SOULCAP
+CD20	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD20	0666c2a713f30454576d62dedecb049fdca0acecbd50bc08804116bd160f7c25				
+CD21	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD21	e60e1a4490685b99e9674d65469bacd24a97d6dd0950210f7a3c7453d86579b1				
+CD24	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD24	e1cdc47dfa67d7f67019de006ba704a9d2bf0b13d04f0bbed037e8fede953bec				
+CD25	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD25	5951ea552f766b80cf59b979f41ba02de31750f5c0f6fbb1b21e55b67f3b82ab				
+CD27	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD27	e2bab281c9ec4622d3a2658385860ce789df4f4577a7bebb3f73976a9fcd82ab				
+CD294	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD294	4bdfb21b9889754554aaaeb73cfaed4816ac01c39857fb81b064b61f3bee8cc7				
+CD3	unresolved	withhold	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#CD3	4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0	protein_complex	CD3 is a multi-chain complex (CD3 gamma, delta, epsilon, zeta). PRO has no general CD3 complex term: its only CD3 complex is the phosphorylated CD3 epsilon:gamma dimer (PR:000025781). Options are CD3 epsilon (PR:000001020, which CL uses in all 23 asserted CD3-negative axioms) or the family term PR:000001018 (CD3 delta/epsilon/gamma). CL encodes T-cell identity with GO TCR complexes (GO:0042101/GO:0042105/GO:0042106). OMIP-069 uses clone SK7. Blocks 71 cell types.	ontology_checked	ask David; decision needed: see docs/marker_resolution.md#decisions-for-david
+CD303	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD303	d098d8dc137622844570ce28ad2dd380e9c669d67864e5248c937e431e2bb6c3				
+CD33	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD33	1de2ca7ac6bfd4daca770841d698b5635586630584ac1a6d8fd8f16537ea3e90				
+CD34	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD34	ee16d3e65d632814251ced067773c95046ec569930b3dc4d22c9da1d9409c640				
+CD38	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD38	a9443ead57bee08f430cd3737fc54621c649a971ee7e05530042406994fbbfb3				
+CD4	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD4	0f768b0ba2691f0fdc2c64d396b8f89f5211d05b6773ee5dcfa2bb41bbff319c				
+CD45	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD45	c2144181df41b433bc4c8b7710bfda4122607d87ade0ed2d33ff4865a4b3c49d				
+CD56	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD56	b51d188a6fdfada2e42569c7553233a5f7625ae2976ba24724e84a95db6ceff1				
+CD57	reagent_gate	withhold	Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.	marker_mappings/marker_protein_gene.csv#CD57	2cfc4413ee4844d8bb2c3bfddeb2ed6704073cfdefe57381f38270aaee40d080	carbohydrate_epitope	CD57 antibodies (clone HNK-1 in OMIP-069) detect the HNK-1 sulfoglucuronyl carbohydrate, not a protein. B3GAT1 (PR:000001440) is the enzyme that makes it. Possible CHEBI representation: CHEBI:137065 (GlcA3S-(1->3)-Gal-(1->4)-GlcNAc), structural match to be confirmed.	ontology_checked	leave withheld
+CD64	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD64	46571d20d73b5ef77ec5c7be28beda3c94890e33c17faf4904e285b294e2db47				
+CD66B	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD66b	42305fda07fd524b609244d79f171598c6b1b1b879466170789a47c30bc9033a				
+CD8	unresolved	withhold	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#CD8	846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a	protein_complex	CD8 is expressed as a CD8 alpha-alpha homodimer or a CD8 alpha-beta heterodimer. PR:000025402 is specifically CD8 alpha-beta (exact synonym CD8alphabeta; components CD8 alpha + CD8 beta), so it excludes CD8aa+ gamma-delta T and NK cells. CD8 alpha (PR:000001084) covers both; CD8 beta is PR:000001085. CL uses PR:000001084, PR:000025402 and PR:000025403. OMIP-069 uses clone SK1.	ontology_checked	ask David; decision needed: see docs/marker_resolution.md#decisions-for-david
+CXCR3	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CXCR3	6620e8f0b53cd1ecfa795de32156537b7835bfbfb2e7a46195c7b9a4a6d21507				
+CXCR5	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CXCR5	edfd11e18c37d49e6723778e16efd44bf98358fa84f3882908d38fd87bcb79c1				
+FCER1A	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#FceR1a	0ffb585d4dc904f1d78456c5f8ae18e3d3c7e53e0a0addf4306a7654eec5884a				
+HLA-DR	complex	withhold	Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.	marker_mappings/marker_protein_gene.csv#HLA-DR	c7b6d01f0a4eaffefce1df3c4a53407d958d2f032e03a9ce22f0354adbdded3c	protein_complex	HLA-DR is a heterodimer of the DR alpha chain (DRA) and one of several DR beta chains (DRB1/3/4/5). The registry uses DRA (PR:000002015), as do 6 asserted CL axioms; CL also uses the generic GO:0042613 (MHC class II protein complex) in 23 axioms, which is not DR-specific. OMIP-069 uses clone L243.	ontology_checked	ask David (DRA vs GO:0042613)
+IFNG	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IFNg	984c2f8cfe641da02a4d92ac78be3e3595127852ff7b8d67acacc0ae3361b8ba				
+IL-13	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-13	0fea4e3f83d693c4bb37136de36e615363c0203996bd448c7b9c442f33cda6be				
+IL-17A	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-17a	92fcb16f42e797476ce20b25717efcfa123fc60b9e8e0f979c01aefecba1fe2e				
+IL-4	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-4	b73d688d701631fa8fe4c1db97221effb5ee895dad8fec7fdf4b77373958ee3c				
+IL-5	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-5	9359347c3979d2efe87eed401c1bab949de52f4c187ebecafa6336c6327a25cd				
+IL-9	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-9	9894867ba02520d0af6c0bf4858b55237d8a74be1be3dadaf0721b3a768ab686				
+IGA	protein_family	withhold	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgA	61ac45fc138bab46fc31d71e42363d20de18a9585ff4717fb02702cbb03c6685	protein_family	Surface IgA is a two-gene family (IGHA1/IGHA2) assembled with light chains. CL models surface immunoglobulin with GO immunoglobulin complex terms; PRO has human IgA1/IgA2 B cell receptor complexes (PR:000050161, PR:000050162) and GO has GO:0071747 (IgA B cell receptor complex).	ontology_checked	use a GO immunoglobulin complex term as CL does (confirm with David)
+IGD	protein_family	withhold	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgD	e4a5f79157c47b9a0e3fccb6d6eb144d50c93d7fb5f71224bd825f3e09adfb52	protein_family	Surface IgD is the IgD immunoglobulin complex. CL uses GO:0071738 (IgD immunoglobulin complex) in 14 axioms (has/lacks plasma membrane part), e.g. on naive B cell. PRO also has PR:000050172 (IgD B cell receptor complex, human).	ontology_checked	use GO:0071738 as CL does (confirm with David)
+IGE	protein_family	withhold	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgE	67b95e398fb1095e4c4a380091f0dae23dec9025456defdd9d0f5f254740da2e	protein_family	Surface IgE is an immunoglobulin complex. GO has GO:0071744 (IgE B cell receptor complex); CL uses GO:0071743 (IgE immunoglobulin complex, circulating) for secreted IgE. No human PRO IgE BCR complex found.	ontology_checked	use a GO immunoglobulin complex term (confirm with David)
+IGG	protein_family	withhold	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgG	c51e1dd6ae671fd9db387be6d0a26fdce6645e0f6a00d14891c0922708a941e7	protein_family	Surface IgG spans four subclass genes (IGHG1-4). CL uses GO:0071735 (IgG immunoglobulin complex); PRO has human IgG1-4 B cell receptor complexes (PR:000050313 to PR:000050316) and GO has GO:0071737 (IgG B cell receptor complex).	ontology_checked	use GO:0071735 as CL does (confirm with David)
+IGM	protein_family	withhold	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgM	fc17667826dd44b6b08bd4cb257f3d4fa23fdbf477c3da79386cb427b0d2f88d	protein_family	Surface IgM is the IgM immunoglobulin complex. CL uses GO:0071753 (IgM immunoglobulin complex) in 11 axioms, e.g. on naive B cell; GO also has GO:0071755 (IgM B cell receptor complex).	ontology_checked	use GO:0071753 as CL does (confirm with David)
+MR1	unresolved	withhold	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#MR1	96c5bf22b0be1d144cf60f175968b19c1485c64c4866d4a109f636a9c9af703d	multimer_reagent	Every sheet use is MR1 Tetramer+ (rows 75-80, 108, 110-115): a tetramer of MR1 loaded with antigen that stains MAIT TCRs. It detects TCR specificity, not MR1 on the cell, so mapping it to MR1 protein (PR:Q95460) would be wrong. The token is split from MR1 Tetramer by the space.	source_traced	leave withheld; report spacing to SOULCAP
+TCR	protein_family	withhold	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#TCR	9a617aa9a766194134020d7afa5feca696fc92cb187377eb72b2bb326d40cae7	source_syntax_artifact	No sheet row uses TCR alone as a marker. The token comes from spaced names split by the tokenizer: TCR Vb11+, TCR VB11+, TCR V delta 1+ and TCR V gamma 9 (sheet rows 60, 76-80, 123-128). If a genuine pan-TCR marker were needed, CL uses GO:0042101 (T cell receptor complex).	source_traced	report to SOULCAP (see reports/soulcap_feedback.tsv)
+TCRVA24	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVa24	f81c80eeaa4d2de919813822e062fe2e4210b8a025bd76ebbad546bdd0936315				
+TCRVA24-JA18	complex	withhold	Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.	marker_mappings/marker_protein_gene.csv#TCRVa24-Ja18	aad1afeeb19ea59d1c85741576656d0bf629f1500ac86d389d008e5adc327020	multi_gene_product	The invariant iNKT TCR alpha chain is a rearrangement of two gene segments, TRAV10 (V alpha 24) and TRAJ18. The registry maps only the V segment (PR:A0A0B4J240, TRAV10), which would also match non-invariant V alpha 24 TCRs.	registry_note_only	leave withheld
+TCRVA7.2	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVa7.2	1917c912d25db47ddf31fdee753f0093f18dfb1fcf080f5a2dcc9a53cdd490a5				
+TCRVB11	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVb11	3b0361d975e31467580067f5d17823f53d425f9d2b5ef44745fee1aba08ca941				
+TCRVD2	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVd2	5fb0b153ecc148621ec7c97ffea4618dcaf12f3f62d1642acfb303c5179ef2ec				
+TCRVG9	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVg9	9318391135642e811b2781de7a9be4cc58f52c5f21dbfe8a0d316f3619f245f1				
+TCRAB	complex	withhold	Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.	marker_mappings/marker_protein_gene.csv#TCRab	db65f2afbe24e19148fe8039a5a7df5983c5e9d0963d9cff9dec278958e33382	protein_complex	Pan alpha-beta TCR antibodies recognise the assembled alpha-beta heterodimer. CL encodes this with GO:0042105 (alpha-beta T cell receptor complex), e.g. on CL:0000789 alpha-beta T cell. No PRO complex term found.	ontology_checked	use GO:0042105 as CL does (confirm with David)
+TCRGD	complex	withhold	Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.	marker_mappings/marker_protein_gene.csv#TCRgd	49ec8f76a1338a63effb3e88e3c748f97f2753861e47ad476c1f4a96384b40ec	protein_complex	Pan gamma-delta TCR antibodies (clone B1.1 in OMIP-069) recognise the assembled gamma-delta heterodimer. CL encodes this with GO:0042106 (gamma-delta T cell receptor complex) on CL:0000798. No PRO complex term found.	ontology_checked	use GO:0042106 as CL does (confirm with David)
+TETRAMER	reagent_gate	withhold	Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.	marker_mappings/marker_protein_gene.csv#Tetramer	2f3894386ee2918f58d53b858eebc8e09729f16699a8f9d6faab2d5900495227	source_syntax_artifact	Second half of the spaced names MR1 Tetramer+ and CD1d-a-GalCer Tetramer+ (rows 60, 75-80, 108, 110-115). Not a marker.	source_traced	report to SOULCAP (see reports/soulcap_feedback.tsv)
+V	unresolved	withhold	No PRO identity recorded; possible source artifact or unresolved marker requires clarification.	marker_mappings/marker_protein_gene.csv#V	610b267c4ba493d65f1528fb008a91bcab513fe39cd039617f4ba0313b50fa61	source_syntax_artifact	From TCR V delta1- (Ideal phenotypic, rows 123-124), which parses without error but splits into TCR / V / delta1, and from TCR V delta 2+ style names (rows 124-128). Intended markers are TCR Vd1, Vd2 and Vg9 (written TCRVd2+, TCRVg9+ in row 123).	source_traced	report to SOULCAP (see reports/soulcap_feedback.tsv)
+VB11	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#VB11	6642023972a293e8a24efa26bb504964bc55c6f68d25a2186fd5609b89465e9f				
+VD1	single_protein	allow	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#Vd1	adcc38bd179456a5c30cbddcb322a4cec7c64ca04f5c0f5ca79aef2703ee25fc				
+DELTA	unresolved	withhold	No PRO identity recorded; possible source artifact or unresolved marker requires clarification.	marker_mappings/marker_protein_gene.csv#delta	83aed236bb5fcdc28afafd651c50af0e2bc053b7d9f64f979e47e39e66751b5e	source_syntax_artifact	From TCR V delta 1+ / TCR V delta 2- (rows 124-128), split at the spaces. Intended markers are TCR Vd1 and Vd2.	source_traced	report to SOULCAP (see reports/soulcap_feedback.tsv)
+DELTA1	unresolved	withhold	No PRO identity recorded; possible source artifact or unresolved marker requires clarification.	marker_mappings/marker_protein_gene.csv#delta1	5b366a2c0a5c2f3a19355bb66e4ad0f88c172aa901c577aa9b16acff92294995	source_syntax_artifact	From TCR V delta1- (Ideal phenotypic, rows 123-124). Intended marker is TCR Vd1.	source_traced	report to SOULCAP (see reports/soulcap_feedback.tsv)
+GAMMA	unresolved	withhold	No PRO identity recorded; possible source artifact or unresolved marker requires clarification.	marker_mappings/marker_protein_gene.csv#gamma	dc9b95fd067723b54cfdb2e4fcf8948e571b2dfc83b0fa6dc407a4bcf6f402be	source_syntax_artifact	From TCR V gamma 9+ / TCR V gamma 9- (rows 124-128), split at the spaces. Intended marker is TCR Vg9.	source_traced	report to SOULCAP (see reports/soulcap_feedback.tsv)
diff --git a/pyproject.toml b/pyproject.toml
index b6551d0..29dee69 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -26,6 +26,8 @@ soulcap-audit = "soulcap_cl_mapping.audit:main"
 soulcap-evaluate = "soulcap_cl_mapping.evaluation:main"
 soulcap-cache-terms = "soulcap_cl_mapping.candidate_index:cache_main"
 soulcap-resolution-audit = "soulcap_cl_mapping.resolution_audit:main"
+soulcap-resolved = "soulcap_cl_mapping.resolved_types:main"
+soulcap-evidence = "soulcap_cl_mapping.literature_evidence:main"
 soulcap-sync = "soulcap_cl_mapping.sync_sheets:main"
 soulcap-validate = "soulcap_cl_mapping.marker_syntax:main"
 soulcap-cache = "soulcap_cl_mapping.snippet_cache:main"
diff --git a/reports/README.md b/reports/README.md
new file mode 100644
index 0000000..7ba589c
--- /dev/null
+++ b/reports/README.md
@@ -0,0 +1,74 @@
+# reports/
+
+Current outputs only. Every tracked file in this folder is listed below.
+Old experiment runs live in [archive/](../archive/2026-09_resolver_experiments/README.md),
+literature evidence in [literature/](../literature/), and planning documents in
+[docs/planning/](../docs/planning/).
+
+**Generated** files are rewritten by the command shown; never hand-edit them.
+**Curated** files are maintained by hand (or by a skill) and cannot be regenerated.
+
+## Mapping proposals
+
+| File | What it is | Produced by | Type |
+|---|---|---|---|
+| [candidate_cl_mappings.sssom.tsv](candidate_cl_mappings.sssom.tsv) | Proposed SOULCAP→CL mappings in standard SSSOM format, with per-mapping marker evidence as JSON in `comment` | `uv run soulcap-sssom` (from [mappings/curated_mappings.tsv](../mappings/curated_mappings.tsv)) | Generated |
+| [candidate_cl_mappings.md](candidate_cl_mappings.md) | Readable view of the same rows (Milestone 4 deliverable) | `uv run soulcap-sssom` | Generated |
+| [candidate_cl_mappings.sssom.provenance.json](candidate_cl_mappings.sssom.provenance.json) | SHA-256 hashes of the inputs used for the export | `uv run soulcap-sssom` | Generated |
+| [candidate_cl_mappings_narrative.md](candidate_cl_mappings_narrative.md) | Pre-migration rationale and sheet-confirmation notes, kept for provenance | Hand-written (frozen archive of old rationale) | Curated |
+| [candidate_cl_mappings_batch.tsv](candidate_cl_mappings_batch.tsv) | Marker-axiom-only candidate shortlist for every SOULCAP row. Unreviewed draft | `uv run soulcap-match --batch` | Generated |
+| [candidate_cl_mappings_agreement.tsv](candidate_cl_mappings_agreement.tsv) | Marker vs lexical agreement shortlist. **Stale**: predates the parser/identity migration; regenerate before use | `uv run soulcap-match --batch --lexical` | Generated |
+
+## Audit and evaluation
+
+| File | What it is | Produced by | Type |
+|---|---|---|---|
+| [audit_dashboard.html](audit_dashboard.html) | Offline, filterable dashboard of entities, proposals, findings, marker coverage, gaps and provenance | `uv run soulcap-audit` | Generated |
+| [audit_summary.md](audit_summary.md) | Text summary of the same audit | `uv run soulcap-audit` | Generated |
+| [audit_data.json](audit_data.json) | Data behind the dashboard | `uv run soulcap-audit` | Generated |
+| [matcher_evaluation.md](matcher_evaluation.md), [matcher_evaluation.tsv](matcher_evaluation.tsv), [matcher_evaluation.json](matcher_evaluation.json) | How well the matcher retrieves the proposed CL targets (provisional agreement, not accuracy) | `uv run soulcap-evaluate` | Generated |
+| [fully_resolved_summary.md](fully_resolved_summary.md), [fully_resolved_cell_types.tsv](fully_resolved_cell_types.tsv), [fully_resolved_cl_terms.tsv](fully_resolved_cl_terms.tsv) | Cell types whose markers all resolve to a single PRO term (strict and lenient rules), the CL terms they reach, and which tokens block the rest. See [docs/marker_resolution.md](../docs/marker_resolution.md#fully-resolved-cell-types-soulcap-resolved) | `uv run soulcap-resolved` | Generated |
+| [marker_resolution_audit.md](marker_resolution_audit.md), [marker_resolution_audit.tsv](marker_resolution_audit.tsv), [marker_resolution_audit.json](marker_resolution_audit.json) | Effect of the per-token resolution policies in [marker_mappings/marker_resolution.tsv](../marker_mappings/marker_resolution.tsv) on axiom links and mapping evidence | `uv run soulcap-resolution-audit` | Generated |
+
+`uv run python -m soulcap_cl_mapping.regression_triage` writes to
+`reports/regression-triage/` by default. No current run is committed; the
+September 2026 run is [archived](../archive/2026-09_resolver_experiments/regression-triage/README.md).
+
+## Source data checks and SOULCAP feedback
+
+| File | What it is | Produced by | Type |
+|---|---|---|---|
+| [marker_validation.md](marker_validation.md) | Marker strings that fail the EBNF grammar | `uv run soulcap-sync` or `uv run soulcap-validate` | Generated |
+| [marker_string_issues.md](marker_string_issues.md) | Reviewed list of marker-string errors and inconsistencies in the sheet | Hand-written | Curated |
+| [proposed_marker_fixes.xlsx](proposed_marker_fixes.xlsx) | Proposed corrections to send to SOULCAP | Hand-written | Curated |
+| [soulcap_feedback.tsv](soulcap_feedback.tsv) | **Draft, not sent.** Rows for SOULCAP to fix: (0) general rules, e.g. no spaces inside marker names; (a) marker strings with syntax errors or that split wrongly, with a suggested fix where one is obvious and passes the grammar; (b) rows with an empty *Required phenotypic markers* column. Built 2026-09-28 from the 2026-09-18 sync and `proposed_marker_fixes.xlsx` | One-off script, then hand-reviewed | Curated |
+
+## Cell Ontology reference snapshots
+
+These are generated, but they are inputs to other code and need network access
+(or a specific local database) to rebuild, so they stay committed.
+
+| File | What it is | Produced by | Type |
+|---|---|---|---|
+| [cl_pro_relationships.tsv](cl_pro_relationships.tsv) | One row per (CL cell type, relation, PRO marker) axiom | `uv run soulcap-cl-pro` (Ubergraph SPARQL) | Generated snapshot |
+| [cl_pro_relationships.md](cl_pro_relationships.md) | Readable view: each CL cell type with its PRO markers grouped by sense | `uv run soulcap-cl-pro` | Generated snapshot |
+| [cl_lexical_cache.json](cl_lexical_cache.json) | Active CL labels and exact synonyms for offline lexical matching | `uv run soulcap-cache-terms` (local OAK database) | Generated snapshot |
+
+## Gaps and upstream issues
+
+| File | What it is | Produced by | Type |
+|---|---|---|---|
+| [gaps.tsv](gaps.tsv) | Cases with no good CL match, CL/marker conflicts, CL axiom gaps, or sheet data problems. Filed as GitHub issues by the `gap-issue-filing` skill | Hand-maintained | Curated |
+| [cl_term_issues.md](cl_term_issues.md) | Proposed Cell Ontology corrections found during mapping | Hand-maintained | Curated |
+| [pro_marker_species_support.tsv](pro_marker_species_support.tsv) | Whether literature supports each CL PRO marker as human, mouse, or both (issue #11) | `pro-marker-species-support` skill, quotes verified verbatim | Curated |
+
+## Not tracked
+
+`reports/citation_traversal/` holds snippet caches and summaries from the
+`citation-traversal` skill. It is gitignored and regenerable.
+
+## Adding a file here
+
+Put a new output here only if it is a current result that people should read.
+Add a row to this README in the same commit. One-off experiments go in
+`archive/<date>_<topic>/` with their own README.
diff --git a/reports/candidate_cl_mappings_narrative.md b/reports/candidate_cl_mappings_narrative.md
index 8144958..7c45ec4 100644
--- a/reports/candidate_cl_mappings_narrative.md
+++ b/reports/candidate_cl_mappings_narrative.md
@@ -46,7 +46,7 @@ mapping — it reflects a real CL gap (see below), not a poor match.
 - Literature: "Natural killer cells are prototypic members of the innate
   lymphoid cell (ILC) family and characterized in humans by expression of the
   phenotypic marker CD56 in the absence of CD3." — Van Acker HH et al. 2017
-  (PMID:28791027) — [reports/literature/nk_cell_markers.md](literature/nk_cell_markers.md)
+  (PMID:28791027) — [archive/2026-09_literature_narratives/nk_cell_markers.md](../archive/2026-09_literature_narratives/nk_cell_markers.md)
 
 **CL gap flagged:** `CL:0000623` asserts no positive marker axiom at all
 (only CD14-/CD19-/CD3-/CD20- negatives), even though CD56 positivity is the
@@ -75,7 +75,7 @@ negative-exclusion markers; the CD16-negative axiom aligns with SOULCAP's
 **Evidence:** Marker→gene as above (CD56 → NCAM1); CD16 → FCGR3A (see
 [marker_mappings/marker_protein_gene.csv](../marker_mappings/marker_protein_gene.csv)).
 Literature distinguishing CD56bright/CD56dim NK subsets:
-[reports/literature/nk_cell_markers.md](literature/nk_cell_markers.md).
+[archive/2026-09_literature_narratives/nk_cell_markers.md](../archive/2026-09_literature_narratives/nk_cell_markers.md).
 
 ---
 
@@ -104,7 +104,7 @@ yet based on current `cl_pro_relationships` data. Flagged for follow-up, not
 yet logged as a formal CL gap.
 
 **Evidence:** Marker→gene as above; literature on CD16+CD56dim cytotoxic NK
-subset: [reports/literature/nk_cell_markers.md](literature/nk_cell_markers.md).
+subset: [archive/2026-09_literature_narratives/nk_cell_markers.md](../archive/2026-09_literature_narratives/nk_cell_markers.md).
 
 ---
 
diff --git a/reports/cl_term_issues.md b/reports/cl_term_issues.md
index 8c0ef14..43b7dfd 100644
--- a/reports/cl_term_issues.md
+++ b/reports/cl_term_issues.md
@@ -80,7 +80,7 @@ cells.
 ### Natural killer cell missing CD56 marker axiom — CL:0000623
 
 **Repo issue:** not yet filed
-**Reference:** SOULCAP `NK` row ([data/marker_combinations.csv](../data/marker_combinations.csv), regenerate via `uv run soulcap-sync`); literature in [reports/literature/nk_cell_markers.md](literature/nk_cell_markers.md)
+**Reference:** SOULCAP `NK` row ([data/marker_combinations.csv](../data/marker_combinations.csv), regenerate via `uv run soulcap-sync`); literature in [archive/2026-09_literature_narratives/nk_cell_markers.md](../archive/2026-09_literature_narratives/nk_cell_markers.md)
 **Status:** Drafted during Milestone 4 candidate mapping work — not yet filed as a repo issue
 
 #### CL:0000623 — "natural killer cell"
@@ -138,6 +138,55 @@ SOULCAP's unqualified "NK" cell type.
 
 ---
 
+## Candidates for review (not filed)
+
+Found during the 2026-09-28 marker-resolution review (tidy plan Phase 3).
+**Not filed anywhere, here or upstream.** For Dr. Osumi-Sutherland to review
+first. Evidence and the full marker-resolution context are in
+[docs/marker_resolution.md](../docs/marker_resolution.md#decisions-for-david).
+
+### CD16 is represented by a mouse-defined PRO term — PR:000001483
+
+**Status:** candidate — not filed
+
+CL's CD16 axioms use PR:000001483 "low affinity immunoglobulin gamma Fc region
+receptor III". PRO defines it (OLS4, retrieved 2026-09-28) as "An
+immunoglobulin gamma Fc receptor II/III/IV that is a translation product of the
+mouse Fcgr3 gene or a 1:1 ortholog thereof." Human CD16 comes from two genes,
+which PRO models separately: PR:000001484 (FCGR3A, CD16a) and PR:000001485
+(FCGR3B, CD16b). Neither is a child of PR:000001483; both sit under
+PR:000001355.
+
+It is used in 20 asserted axioms, including three terms labelled as human:
+
+- CL:0000938 "CD16-negative, CD56-bright natural killer cell, human" (lacks)
+- CL:0000939 "CD16-positive, CD56-dim natural killer cell, human" (has)
+- CL:0002343 "decidual natural killer cell, human" (lacks)
+
+**Question for review:** should human CD16 axioms use CD16a and/or CD16b
+instead? The common clone 3G8 binds both (see the clone table in the doc
+linked above), so a CD16− flow gate means "lacks CD16a and lacks CD16b".
+
+### CD15 is represented by the enzyme that makes it — PR:000001456 (FUT4)
+
+**Status:** candidate — not filed
+
+CD15 antibodies detect the Lewis X carbohydrate, but CL's CD15 axioms use
+PR:000001456 "alpha-(1,3)-fucosyltransferase 4" (FUT4), the enzyme that
+synthesises it. PRO lists "CD15" as an exact synonym of FUT4 (OLS4, retrieved
+2026-09-28), which is probably where the link comes from. It is used in 8
+asserted `has plasma membrane part` axioms, all on granulocyte-lineage terms
+(e.g. CL:0000096 mature neutrophil, CL:0000836 promyelocyte).
+
+**Question for review:** is "has plasma membrane part FUT4" an acceptable
+stand-in for "CD15-positive", or should CD15 be modelled as a carbohydrate
+(a CHEBI Lewis X term such as CHEBI:62287, structural match to be
+confirmed)? The same question applies to CD57 (HNK-1 epitope, made by
+B3GAT1, PR:000001440): CL has one such axiom, CL:4033092 "CD57-positive
+enterocyte" `expresses` PR:000001440.
+
+---
+
 ## Resolved issues
 
 *(none yet)*
diff --git a/reports/evaluation-alias/matcher_evaluation.json b/reports/evaluation-alias/matcher_evaluation.json
deleted file mode 100644
index 6757c43..0000000
--- a/reports/evaluation-alias/matcher_evaluation.json
+++ /dev/null
@@ -1,83216 +0,0 @@
-{
-  "schema_version": 1,
-  "generated_utc": "2026-09-10T19:46:00.594110+00:00",
-  "inputs": {
-    "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44",
-    "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8",
-    "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e",
-    "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c",
-    "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706",
-    "marker_map": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7"
-  },
-  "benchmark_path": "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\matcher_benchmark.tsv",
-  "matcher": {
-    "version": "0.1.0",
-    "source_hashes": {
-      "cl_match.py": "1bec5e9d880cfd34574ae55dfde29d4b62c745e9649a9b5d292d5697d848649f",
-      "phenotype.py": "6d3e7e59b884365fa48596fe1365b8630053b70a6259bb0e8f42413a55a9514a",
-      "marker_syntax.py": "e40620b1d804eec3c1f05251716092abd7f5a273e11ba91ce61a3345b1872ade",
-      "registry.py": "a225ca650e0278378566bf7134b3d8daa33dabee0c61c3d479d8affddf7a25fd",
-      "evaluation.py": "ad643e2b29d58e07d3e16b9c8aca15723f160cad346c751597cf52dec9526b25",
-      "audit.py": "86a7f3978446fe1122eec579b5a4c41ea3adf0086b5bcb642c195104e4125d4d",
-      "candidate_index.py": "b8ede03e76d0df09fd8735d1d45178c77a977c6ae40a61c38478bbb4be737ddc"
-    }
-  },
-  "config": {
-    "ks": [
-      1,
-      3,
-      5
-    ],
-    "ranking": "production order, including disqualified candidates",
-    "ties": "primary metrics use production order; bounds report tie sensitivity",
-    "denominator": "all cohort cases, including unscorable profiles and absent targets",
-    "marker_resolution": true,
-    "local_lexical": false,
-    "lexical_limit": 20,
-    "lexical_min_jaccard": 0.5
-  },
-  "candidate_count": 826,
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-            {
-              "sense": "negative",
-              "pr": "PR:000001002",
-              "asserted": "False",
-              "paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD19",
-                  "tokens": [
-                    "CD19"
-                  ]
-                },
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000001002",
-                  "tokens": [
-                    "CD19"
-                  ]
-                }
-              ]
-            },
-            {
-              "sense": "negative",
-              "pr": "PR:000001020",
-              "asserted": "False",
-              "paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3",
-                  "tokens": [
-                    "CD3"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000001020",
-                  "tokens": [
-                    "CD3"
-                  ]
-                }
-              ]
-            },
-            {
-              "sense": "negative",
-              "pr": "PR:000001289",
-              "asserted": "False",
-              "paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD20",
-                  "tokens": [
-                    "CD20"
-                  ]
-                },
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000001289",
-                  "tokens": [
-                    "CD20"
-                  ]
-                }
-              ]
-            },
-            {
-              "sense": "negative",
-              "pr": "PR:000001483",
-              "asserted": "True",
-              "paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD16",
-                  "tokens": [
-                    "CD16"
-                  ]
-                },
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000001483",
-                  "tokens": [
-                    "CD16"
-                  ]
-                }
-              ]
-            },
-            {
-              "sense": "negative",
-              "pr": "PR:000001889",
-              "asserted": "False",
-              "paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD14",
-                  "tokens": [
-                    "CD14"
-                  ]
-                },
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000001889",
-                  "tokens": [
-                    "CD14"
-                  ]
-                }
-              ]
-            },
-            {
-              "sense": "positive",
-              "pr": "PR:000009766",
-              "asserted": "True",
-              "paths": []
-            }
-          ]
-        }
-      ],
-      "target_results": [],
-      "status": "target_not_in_index",
-      "note": ""
-    }
-  ],
-  "metrics": {
-    "reviewed": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "provisional": {
-      "cases": 80,
-      "mrr": 0.1524095320342756,
-      "statuses": {
-        "below_top_5": 42,
-        "hit_at_5": 19,
-        "invalid_profile": 6,
-        "target_not_in_index": 13
-      },
-      "cases_with_missing_targets": 15,
-      "top1_disqualified": 0,
-      "hit_at_1": 0.0875,
-      "hit_at_1_optimistic": 0.125,
-      "hit_at_1_pessimistic": 0.0,
-      "hit_at_3": 0.15,
-      "hit_at_3_optimistic": 0.2,
-      "hit_at_3_pessimistic": 0.0875,
-      "hit_at_5": 0.2375,
-      "hit_at_5_optimistic": 0.275,
-      "hit_at_5_pessimistic": 0.1
-    }
-  },
-  "by_relation": {
-    "reviewed/Exact": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "reviewed/Broad": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
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-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
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-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "reviewed/Narrow": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "reviewed/Related": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "provisional/Exact": {
-      "cases": 50,
-      "mrr": 0.15217520145714408,
-      "statuses": {
-        "below_top_5": 26,
-        "hit_at_5": 12,
-        "invalid_profile": 6,
-        "target_not_in_index": 6
-      },
-      "cases_with_missing_targets": 8,
-      "top1_disqualified": 0,
-      "hit_at_1": 0.08,
-      "hit_at_1_optimistic": 0.14,
-      "hit_at_1_pessimistic": 0.0,
-      "hit_at_3": 0.16,
-      "hit_at_3_optimistic": 0.18,
-      "hit_at_3_pessimistic": 0.08,
-      "hit_at_5": 0.24,
-      "hit_at_5_optimistic": 0.24,
-      "hit_at_5_pessimistic": 0.1
-    },
-    "provisional/Broad": {
-      "cases": 30,
-      "mrr": 0.1528000829961614,
-      "statuses": {
-        "hit_at_5": 7,
-        "below_top_5": 16,
-        "target_not_in_index": 7
-      },
-      "cases_with_missing_targets": 7,
-      "top1_disqualified": 0,
-      "hit_at_1": 0.1,
-      "hit_at_1_optimistic": 0.1,
-      "hit_at_1_pessimistic": 0.0,
-      "hit_at_3": 0.13333333333333333,
-      "hit_at_3_optimistic": 0.23333333333333334,
-      "hit_at_3_pessimistic": 0.1,
-      "hit_at_5": 0.23333333333333334,
-      "hit_at_5_optimistic": 0.3333333333333333,
-      "hit_at_5_pessimistic": 0.1
-    },
-    "provisional/Narrow": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "provisional/Related": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    }
-  }
-}
diff --git a/reports/evaluation-legacy/matcher_evaluation.json b/reports/evaluation-legacy/matcher_evaluation.json
deleted file mode 100644
index d922e8d..0000000
--- a/reports/evaluation-legacy/matcher_evaluation.json
+++ /dev/null
@@ -1,14487 +0,0 @@
-{
-  "schema_version": 1,
-  "generated_utc": "2026-09-10T19:45:57.474651+00:00",
-  "inputs": {
-    "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44",
-    "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8",
-    "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e",
-    "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c",
-    "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706"
-  },
-  "benchmark_path": "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\matcher_benchmark.tsv",
-  "matcher": {
-    "version": "0.1.0",
-    "source_hashes": {
-      "cl_match.py": "1bec5e9d880cfd34574ae55dfde29d4b62c745e9649a9b5d292d5697d848649f",
-      "phenotype.py": "6d3e7e59b884365fa48596fe1365b8630053b70a6259bb0e8f42413a55a9514a",
-      "marker_syntax.py": "e40620b1d804eec3c1f05251716092abd7f5a273e11ba91ce61a3345b1872ade",
-      "registry.py": "a225ca650e0278378566bf7134b3d8daa33dabee0c61c3d479d8affddf7a25fd",
-      "evaluation.py": "ad643e2b29d58e07d3e16b9c8aca15723f160cad346c751597cf52dec9526b25",
-      "audit.py": "86a7f3978446fe1122eec579b5a4c41ea3adf0086b5bcb642c195104e4125d4d",
-      "candidate_index.py": "b8ede03e76d0df09fd8735d1d45178c77a977c6ae40a61c38478bbb4be737ddc"
-    }
-  },
-  "config": {
-    "ks": [
-      1,
-      3,
-      5
-    ],
-    "ranking": "production order, including disqualified candidates",
-    "ties": "primary metrics use production order; bounds report tie sensitivity",
-    "denominator": "all cohort cases, including unscorable profiles and absent targets",
-    "marker_resolution": false,
-    "local_lexical": false,
-    "lexical_limit": 20,
-    "lexical_min_jaccard": 0.5
-  },
-  "candidate_count": 826,
-  "marker_resolution_issues": [],
-  "cases": [
-    {
-      "case_id": "provisional/SOULCAP:SC000001/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000001",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000623"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": 6,
-      "rank_best": 6,
-      "rank_worst": 32,
-      "missing_targets": [],
-      "candidates": [
-        {
-          "cl_id": "CL:0002338",
-          "label": "CD56-positive, CD161-positive immature natural killer cell, human",
-          "score": 23,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD34-",
-            "CD3-",
-            "CD19-",
-            "CD56+ (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD45+",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-",
-            "CD33-/CD64- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "score": 19,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-",
-            "CD56+ (hi) (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-",
-            "CD33-/CD64- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0000939",
-          "label": "CD16-positive, CD56-dim natural killer cell, human",
-          "score": 19,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-",
-            "CD56+ (dim) (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-",
-            "CD33-/CD64- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0002343",
-          "label": "decidual natural killer cell, human",
-          "score": 19,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-",
-            "CD56+ (hi) (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-",
-            "CD33-/CD64- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0001073",
-          "label": "CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human",
-          "score": 17,
-          "matched": [
-            "CD34-",
-            "CD3-",
-            "CD19-",
-            "CD56+ (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD45+",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-",
-            "CD33-/CD64- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        }
-      ],
-      "target_results": [
-        {
-          "cl_id": "CL:0000623",
-          "label": "natural killer cell",
-          "score": 15,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD56+/CD56:high (no axiom on any alt.)",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-",
-            "CD33-/CD64- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": [],
-          "rank": 6,
-          "rank_best": 6,
-          "rank_worst": 32
-        }
-      ],
-      "status": "below_top_5",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000002/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000002",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000938"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": 1,
-      "rank_best": 1,
-      "rank_worst": 2,
-      "missing_targets": [],
-      "candidates": [
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "score": 23,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-",
-            "CD56:high (hi)",
-            "CD16- (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD127-",
-            "CD57-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0002343",
-          "label": "decidual natural killer cell, human",
-          "score": 23,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-",
-            "CD56:high (hi)",
-            "CD16- (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD127-",
-            "CD57-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0002338",
-          "label": "CD56-positive, CD161-positive immature natural killer cell, human",
-          "score": 19,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD34-",
-            "CD3-",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD45+",
-            "CD56:high",
-            "CD127-",
-            "CD16-/CD16:low (no axiom on any alt.)",
-            "CD57-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0000623",
-          "label": "natural killer cell",
-          "score": 15,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD56:high",
-            "CD127-",
-            "CD16-/CD16:low (no axiom on any alt.)",
-            "CD57-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
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-        },
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-            "CD303+ (1 of 3 alt.)",
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-        },
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-            "CD56-",
-            "CD19-",
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-          "resolution_evidence": []
-        }
-      ],
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-          "cl_id": "CL:0001058",
-          "label": "plasmacytoid dendritic cell, human",
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-          "matched": [
-            "CD3-",
-            "CD56-",
-            "CD19-",
-            "CD14-"
-          ],
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-            "CD33:low/CD33+/CD123:high (no axiom on any alt.)",
-            "CD193-/FCER1A-/CD303+ (no axiom on any alt.)",
-            "CD127-",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-          "contradictions": [],
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-        }
-      ],
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-      "cohort": "provisional",
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-      "match_type": "Exact",
-      "targets": [
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-      "evidence_reference": "mappings/curated_mappings.tsv",
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-          "matched": [
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-            "CD33+ (1 of 2 alt.)",
-            "CD193+ (hi) (1 of 4 alt.)",
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-            "CD14-",
-            "FCER1A+",
-            "HLA-DR-"
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-          "resolution_evidence": []
-        },
-        {
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-            "CD123+ (1 of 2 alt.)",
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-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD123+ (hi) (1 of 2 alt.)",
-            "CD193+ (hi) (1 of 4 alt.)",
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-            "CD127-",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-        },
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-            "CD193+ (1 of 4 alt.)",
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-            "CD16-"
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-            "CD127-",
-            "CD14-",
-            "FCER1A+",
-            "HLA-DR-"
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-        },
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-            "CD127-",
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-            "CD15-/CD66B- (no axiom on any alt.)",
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-      "match_type": "Exact",
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-        {
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-            "CD123+ (hi)",
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-            "CD123+ (hi)",
-            "CD56-",
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-            "CD127-"
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-        },
-        {
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-            "CD45+",
-            "CD123+",
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-          "resolution_evidence": []
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-      "note": "invalid expression in Required exclusion: unexpected ')' in group"
-    },
-    {
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-      "note": "invalid expression in Required exclusion: unexpected ')' in group"
-    },
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-      "subject_id": "SOULCAP:SC000019",
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-      "note": "invalid expression in Required exclusion: unexpected ')' in group"
-    },
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-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000020",
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-    },
-    {
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-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000021",
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-            "CD66B+ (1 of 2 alt.)",
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-          "resolution_evidence": []
-        },
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-            "CD56-",
-            "CD14- (1 of 2 alt.)",
-            "CD123-",
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-            "CD15:high/CD66B+ (no axiom on any alt.)",
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-          "resolution_evidence": []
-        },
-        {
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-            "CD56-",
-            "CD14- (1 of 2 alt.)",
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-            "CD15:high/CD66B+ (no axiom on any alt.)",
-            "CD193-",
-            "CD16:high",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD64-/CD33+ (no axiom on any alt.)"
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-        },
-        {
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-            "CD56-",
-            "CD14- (1 of 2 alt.)",
-            "CD45+",
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-            "CD15:high/CD66B+ (no axiom on any alt.)",
-            "CD193-",
-            "CD16:high",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD64-/CD33+ (no axiom on any alt.)"
-          ],
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-          "cl_id": "CL:0002343",
-          "label": "decidual natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        }
-      ],
-      "target_results": [
-        {
-          "cl_id": "CL:0000913",
-          "label": "effector memory CD8-positive, alpha-beta T cell",
-          "score": 3,
-          "matched": [],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": [],
-          "rank": 239,
-          "rank_best": 238,
-          "rank_worst": 247
-        }
-      ],
-      "status": "below_top_5",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000103/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000103",
-      "match_type": "Exact",
-      "targets": [
-        "CL:4030002"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": null,
-      "rank_best": null,
-      "rank_worst": null,
-      "missing_targets": [
-        "CL:4030002"
-      ],
-      "candidates": [
-        {
-          "cl_id": "CL:0001057",
-          "label": "myeloid dendritic cell, human",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0002000",
-          "label": "Kit-positive erythroid progenitor cell",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0001024",
-          "label": "CD34-positive, CD38-negative hematopoietic stem cell",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0002343",
-          "label": "decidual natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        }
-      ],
-      "target_results": [],
-      "status": "target_not_in_index",
-      "note": ""
-    }
-  ],
-  "metrics": {
-    "reviewed": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "provisional": {
-      "cases": 80,
-      "mrr": 0.1524095320342756,
-      "statuses": {
-        "below_top_5": 42,
-        "hit_at_5": 19,
-        "invalid_profile": 6,
-        "target_not_in_index": 13
-      },
-      "cases_with_missing_targets": 15,
-      "top1_disqualified": 0,
-      "hit_at_1": 0.0875,
-      "hit_at_1_optimistic": 0.125,
-      "hit_at_1_pessimistic": 0.0,
-      "hit_at_3": 0.15,
-      "hit_at_3_optimistic": 0.2,
-      "hit_at_3_pessimistic": 0.0875,
-      "hit_at_5": 0.2375,
-      "hit_at_5_optimistic": 0.275,
-      "hit_at_5_pessimistic": 0.1
-    }
-  },
-  "by_relation": {
-    "reviewed/Exact": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "reviewed/Broad": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "reviewed/Narrow": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "reviewed/Related": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "provisional/Exact": {
-      "cases": 50,
-      "mrr": 0.15217520145714408,
-      "statuses": {
-        "below_top_5": 26,
-        "hit_at_5": 12,
-        "invalid_profile": 6,
-        "target_not_in_index": 6
-      },
-      "cases_with_missing_targets": 8,
-      "top1_disqualified": 0,
-      "hit_at_1": 0.08,
-      "hit_at_1_optimistic": 0.14,
-      "hit_at_1_pessimistic": 0.0,
-      "hit_at_3": 0.16,
-      "hit_at_3_optimistic": 0.18,
-      "hit_at_3_pessimistic": 0.08,
-      "hit_at_5": 0.24,
-      "hit_at_5_optimistic": 0.24,
-      "hit_at_5_pessimistic": 0.1
-    },
-    "provisional/Broad": {
-      "cases": 30,
-      "mrr": 0.1528000829961614,
-      "statuses": {
-        "hit_at_5": 7,
-        "below_top_5": 16,
-        "target_not_in_index": 7
-      },
-      "cases_with_missing_targets": 7,
-      "top1_disqualified": 0,
-      "hit_at_1": 0.1,
-      "hit_at_1_optimistic": 0.1,
-      "hit_at_1_pessimistic": 0.0,
-      "hit_at_3": 0.13333333333333333,
-      "hit_at_3_optimistic": 0.23333333333333334,
-      "hit_at_3_pessimistic": 0.1,
-      "hit_at_5": 0.23333333333333334,
-      "hit_at_5_optimistic": 0.3333333333333333,
-      "hit_at_5_pessimistic": 0.1
-    },
-    "provisional/Narrow": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "provisional/Related": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    }
-  }
-}
diff --git a/reports/fully_resolved_cell_types.tsv b/reports/fully_resolved_cell_types.tsv
new file mode 100644
index 0000000..3419d97
--- /dev/null
+++ b/reports/fully_resolved_cell_types.tsv
@@ -0,0 +1 @@
+subject_id	label	abbreviation	context	rule	n_tokens	tokens	pro_ids	curated_cl_id	cl_label	match_type	review_status	evidence_status	n_matched	n_contradictions	n_unknown	cl_has_marker_axioms	n_cl_marker_axioms
diff --git a/reports/fully_resolved_cl_terms.tsv b/reports/fully_resolved_cl_terms.tsv
new file mode 100644
index 0000000..2931ba1
--- /dev/null
+++ b/reports/fully_resolved_cl_terms.tsv
@@ -0,0 +1 @@
+cl_id	cl_label	has_marker_axioms	n_strict	n_lenient_only	match_types	subject_ids
diff --git a/reports/fully_resolved_summary.md b/reports/fully_resolved_summary.md
new file mode 100644
index 0000000..fbe3cf3
--- /dev/null
+++ b/reports/fully_resolved_summary.md
@@ -0,0 +1,61 @@
+# Fully resolved SOULCAP cell types
+
+Generated by `uv run soulcap-resolved`. Do not edit by hand.
+
+A cell type is **fully resolved** when every marker token in scope maps to
+exactly one PRO term under an explicit `single_protein` / `allow` policy in
+`marker_mappings/marker_resolution.tsv`. **Strict** covers all four marker
+columns; **lenient** covers only the two *Required* columns. The `live/`
+gate is never counted. Marker evidence is computed with the same policies
+(`--marker-map` mode). All proposals are `needs_review`; nothing here is a
+confidence judgement.
+
+Profiles assessed: 127. Excluded: 30 with no
+*Required phenotypic markers* (defined only by their parent gate, so the
+exclusion panel alone would count as resolved).
+
+## Strict
+
+- Cell types fully resolved: **0** (0 with a proposed CL mapping, 0 without)
+- none
+- none
+- none
+
+| Match type | Contradictions | CL term has marker axioms | Cell types |
+|---|---|---|---:|
+
+## Lenient
+
+- Cell types fully resolved: **0** (0 with a proposed CL mapping, 0 without)
+- none
+- none
+- none
+
+| Match type | Contradictions | CL term has marker axioms | Cell types |
+|---|---|---|---:|
+
+## Unique CL terms reached
+
+0 distinct CL terms (strict or lenient). See `fully_resolved_cl_terms.tsv`.
+
+## Tokens blocking the lenient rule
+
+How many assessed cell types each unresolved token (in a Required column)
+blocks, and how many it is the *only* blocker for.
+
+| Token | Cell types blocked | Only blocker |
+|---|---:|---:|
+| `CD3` | 71 | 16 |
+| `CD8` | 28 | 0 |
+| `<syntax error>` | 23 | 20 |
+| `TCRab` | 21 | 0 |
+| `TCRgd` | 21 | 0 |
+| `IgD` | 14 | 0 |
+| `CD16` | 12 | 0 |
+| `IgM` | 7 | 0 |
+| `IgE` | 5 | 0 |
+| `HLA-DR` | 4 | 0 |
+| `CD15` | 3 | 0 |
+| `CD57` | 3 | 0 |
+| `IgA` | 3 | 0 |
+| `IgG` | 3 | 0 |
diff --git a/reports/gaps.tsv b/reports/gaps.tsv
index aa5656c..806ea23 100644
--- a/reports/gaps.tsv
+++ b/reports/gaps.tsv
@@ -1,5 +1,5 @@
 soulcap_abbreviation	soulcap_full_name	gap_type	description	related_cl_ids	evidence	status	repo_issue	date_logged
-NK	Natural Killer Cell	cl_axiom_gap	CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the field-standard defining positive marker CD56 is absent from its own axioms, though present on its child terms.	CL:0000623	reports/cl_pro_relationships.md; reports/literature/nk_cell_markers.md; reports/cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623	open	(not yet filed)	2026-07-22
+NK	Natural Killer Cell	cl_axiom_gap	CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the field-standard defining positive marker CD56 is absent from its own axioms, though present on its child terms.	CL:0000623	reports/cl_pro_relationships.md; archive/2026-09_literature_narratives/nk_cell_markers.md; reports/cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623	open	(not yet filed)	2026-07-22
 NK1 / NK3	Natural Killer Cell 1 / Natural Killer Cell 3	cl_axiom_gap	CL:0000939 (CD16-positive, CD56-dim NK cell, human) does not distinguish CD57-negative (NK1) from CD57-positive (NK3) substates; both SOULCAP rows currently map to the same CL term at Broad match type.	CL:0000939	reports/candidate_cl_mappings_narrative.md#ctnk--nk1--nk3--cytotoxic-natural-killer-cell-cd16-positive	open	(not yet filed)	2026-07-22
 ILC1	Innate Lymphoid Cell 1	cl_axiom_gap	No human-specific "group 1 innate lymphoid cell" CL term exists, unlike group 2 (CL:0001081) and group 3 (CL:0001078); confirmed by direct OLS4 search returning zero hits for the human-qualified query.	CL:0001067	reports/cl_term_issues.md#missing-human-specific-group-1-innate-lymphoid-cell-term	filed_as_issue	https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14	2026-07-23
 Transitional	Transitional B cell	no_reasonable_cl_match	SOULCAP row has all four marker columns (Required/Ideal exclusion, Required/Ideal phenotypic markers) completely empty in the master sheet — there is no marker definition to match against at all, so no CL candidate can be derived from markers. Distinct from the more specific "T3" (Transitional B cell 3) row, which does have marker data.	(none)	reports/candidate_cl_mappings_batch.tsv (note column); data/marker_combinations.csv	open	(not yet filed)	2026-07-24
diff --git a/reports/marker_resolution_audit.json b/reports/marker_resolution_audit.json
index 8c6974a..c0fe5f8 100644
--- a/reports/marker_resolution_audit.json
+++ b/reports/marker_resolution_audit.json
@@ -1,13 +1,13 @@
 {
   "schema_version": 1,
-  "generated_utc": "2026-09-11T04:13:34.206460+00:00",
+  "generated_utc": "2026-09-28T17:17:14.728099+00:00",
   "inputs": {
     "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\data\\marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44",
     "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8",
     "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e",
     "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\reports\\cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c",
     "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\marker_mappings\\marker_protein_gene.csv": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7",
-    "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\marker_mappings\\marker_resolution.tsv": "317578b4b7fb1a9837b9a61fa85c2dc1ea6469eab4404b0435476ba4a12a1f84"
+    "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\marker_mappings\\marker_resolution.tsv": "46b51c55cd4cd682d071761a79ff5293e36ef9be6c99235bd67a45c45ad49405"
   },
   "note": "Same source and axiom snapshots; no lexical expansion. Counts describe computational evidence, not biological accuracy. Source usage comes from valid cells only.",
   "summary": {
@@ -32,6 +32,10 @@
       "canonical": "CCR4",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CCR4",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CCR4"
       ],
@@ -50,6 +54,10 @@
       "canonical": "CCR6",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CCR6",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CCR6"
       ],
@@ -68,6 +76,10 @@
       "canonical": "CD10",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD10",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD10"
       ],
@@ -93,6 +105,10 @@
       "canonical": "CD117",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD117",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD117"
       ],
@@ -114,6 +130,10 @@
       "canonical": "CD11C",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD11c",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD11c"
       ],
@@ -250,6 +270,10 @@
       "canonical": "CD123",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD123",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD123"
       ],
@@ -388,6 +412,10 @@
       "canonical": "CD127",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD127",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD127"
       ],
@@ -443,6 +471,10 @@
       "canonical": "CD138",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD138",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD138"
       ],
@@ -462,6 +494,10 @@
       "canonical": "CD14",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD14",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD14"
       ],
@@ -603,6 +639,10 @@
       "canonical": "CD141",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD141",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD141"
       ],
@@ -622,6 +662,10 @@
       "canonical": "CD15",
       "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD15",
+      "failure_category": "carbohydrate_epitope",
+      "specific_rationale": "CD15 antibodies detect the Lewis X (SSEA-1) carbohydrate, not a protein. The registry PRO ID (PR:000001456) is FUT4, the fucosyltransferase that makes it; PRO lists CD15 as an exact synonym of FUT4 and CL uses FUT4 in 8 asserted CD15 axioms. Possible CHEBI representation: CHEBI:62287 (Gal-(1->4)-[Fuc-(1->3)]-GlcNAc), structural match to be confirmed.",
+      "evidence_level": "ontology_checked",
+      "next_action": "leave withheld; propose CL/PRO issue on CD15 = FUT4",
       "registry_tokens": [
         "CD15"
       ],
@@ -761,6 +805,10 @@
       "canonical": "CD16",
       "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD16",
+      "failure_category": "multi_gene_product",
+      "specific_rationale": "Human CD16 is two genes: FCGR3A (CD16a, PR:000001484) and FCGR3B (CD16b, PR:000001485). The registry and CL use PR:000001483, which PRO defines as the product of the mouse Fcgr3 gene or a 1:1 ortholog, so it does not clearly cover either human gene. OMIP-069 uses clone 3G8, which binds both CD16a and CD16b (PMC12606087). CD16 is mostly used in the shared exclusion panel (CD15-|CD66b-) CD16-, which mirrors SOULCAP's CD16hi neutrophil definition; neutrophils carry CD16b, so CD16a alone would misrepresent exclusion gates.",
+      "evidence_level": "ontology_checked",
+      "next_action": "ask David (likely lacks CD16a and lacks CD16b for exclusion); propose CL issue on PR:000001483 for human cell types",
       "registry_tokens": [
         "CD16"
       ],
@@ -896,6 +944,10 @@
       "canonical": "CD161",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD161",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD161"
       ],
@@ -914,6 +966,10 @@
       "canonical": "CD172A",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD172a",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD172a"
       ],
@@ -933,6 +989,10 @@
       "canonical": "CD183",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD183",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD183"
       ],
@@ -955,6 +1015,10 @@
       "canonical": "CD185",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD185",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD185"
       ],
@@ -981,6 +1045,10 @@
       "canonical": "CD19",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD19",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD19"
       ],
@@ -1119,6 +1187,10 @@
       "canonical": "CD193",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD193",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD193"
       ],
@@ -1144,6 +1216,10 @@
       "canonical": "CCR4",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD194",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD194"
       ],
@@ -1166,6 +1242,10 @@
       "canonical": "CCR6",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD196",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD196"
       ],
@@ -1188,6 +1268,10 @@
       "canonical": "CD198",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD198",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD198"
       ],
@@ -1207,6 +1291,10 @@
       "canonical": "CD1C",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD1c",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD1c"
       ],
@@ -1226,6 +1314,10 @@
       "canonical": "CD1D-A-GALCER",
       "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD1d-a-GalCer",
+      "failure_category": "lipid_antigen_reagent",
+      "specific_rationale": "First half of CD1d-a-GalCer Tetramer+ (rows 60, 76-80, 108, 110-115): CD1d loaded with the lipid alpha-galactosylceramide, a reagent that stains iNKT TCRs. Not a protein marker on the cell.",
+      "evidence_level": "source_traced",
+      "next_action": "leave withheld; report spacing to SOULCAP",
       "registry_tokens": [
         "CD1d-a-GalCer"
       ],
@@ -1242,6 +1334,10 @@
       "canonical": "CD20",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD20",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD20"
       ],
@@ -1363,6 +1459,10 @@
       "canonical": "CD21",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD21",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD21"
       ],
@@ -1384,6 +1484,10 @@
       "canonical": "CD24",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD24",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD24"
       ],
@@ -1409,6 +1513,10 @@
       "canonical": "CD25",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD25",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD25"
       ],
@@ -1427,6 +1535,10 @@
       "canonical": "CD27",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD27",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD27"
       ],
@@ -1464,6 +1576,10 @@
       "canonical": "CD294",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD294",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD294"
       ],
@@ -1487,6 +1603,10 @@
       "canonical": "CD3",
       "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
+      "failure_category": "protein_complex",
+      "specific_rationale": "CD3 is a multi-chain complex (CD3 gamma, delta, epsilon, zeta). PRO has no general CD3 complex term: its only CD3 complex is the phosphorylated CD3 epsilon:gamma dimer (PR:000025781). Options are CD3 epsilon (PR:000001020, which CL uses in all 23 asserted CD3-negative axioms) or the family term PR:000001018 (CD3 delta/epsilon/gamma). CL encodes T-cell identity with GO TCR complexes (GO:0042101/GO:0042105/GO:0042106). OMIP-069 uses clone SK7. Blocks 71 cell types.",
+      "evidence_level": "ontology_checked",
+      "next_action": "ask David; decision needed: see docs/marker_resolution.md#decisions-for-david",
       "registry_tokens": [
         "CD3"
       ],
@@ -1582,6 +1702,10 @@
       "canonical": "CD303",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD303",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD303"
       ],
@@ -1604,6 +1728,10 @@
       "canonical": "CD33",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD33",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD33"
       ],
@@ -1745,6 +1873,10 @@
       "canonical": "CD34",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD34",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD34"
       ],
@@ -1771,6 +1903,10 @@
       "canonical": "CD38",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD38",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD38"
       ],
@@ -1808,6 +1944,10 @@
       "canonical": "CD4",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD4",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD4"
       ],
@@ -1853,6 +1993,10 @@
       "canonical": "CD45",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD45",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD45"
       ],
@@ -1948,6 +2092,10 @@
       "canonical": "CD56",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD56",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD56"
       ],
@@ -2016,6 +2164,10 @@
       "canonical": "CD57",
       "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD57",
+      "failure_category": "carbohydrate_epitope",
+      "specific_rationale": "CD57 antibodies (clone HNK-1 in OMIP-069) detect the HNK-1 sulfoglucuronyl carbohydrate, not a protein. B3GAT1 (PR:000001440) is the enzyme that makes it. Possible CHEBI representation: CHEBI:137065 (GlcA3S-(1->3)-Gal-(1->4)-GlcNAc), structural match to be confirmed.",
+      "evidence_level": "ontology_checked",
+      "next_action": "leave withheld",
       "registry_tokens": [
         "CD57"
       ],
@@ -2036,6 +2188,10 @@
       "canonical": "CD64",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD64",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD64"
       ],
@@ -2175,6 +2331,10 @@
       "canonical": "CD66B",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD66b",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CD66b"
       ],
@@ -2314,13 +2474,17 @@
       "canonical": "CD8",
       "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
+      "failure_category": "protein_complex",
+      "specific_rationale": "CD8 is expressed as a CD8 alpha-alpha homodimer or a CD8 alpha-beta heterodimer. PR:000025402 is specifically CD8 alpha-beta (exact synonym CD8alphabeta; components CD8 alpha + CD8 beta), so it excludes CD8aa+ gamma-delta T and NK cells. CD8 alpha (PR:000001084) covers both; CD8 beta is PR:000001085. CL uses PR:000001084, PR:000025402 and PR:000025403. OMIP-069 uses clone SK1.",
+      "evidence_level": "ontology_checked",
+      "next_action": "ask David; decision needed: see docs/marker_resolution.md#decisions-for-david",
       "registry_tokens": [
         "CD8"
       ],
       "legacy_axiom_rows": 318,
-      "enhanced_axiom_rows": 0,
+      "enhanced_axiom_rows": 39,
       "gained": 0,
-      "lost": 318,
+      "lost": 279,
       "affected_subjects": [
         "SOULCAP:SC000047",
         "SOULCAP:SC000048",
@@ -2359,6 +2523,10 @@
       "canonical": "CD183",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CXCR3",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CXCR3"
       ],
@@ -2377,6 +2545,10 @@
       "canonical": "CD185",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#CXCR5",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "CXCR5"
       ],
@@ -2395,6 +2567,10 @@
       "canonical": "DELTA",
       "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#delta",
+      "failure_category": "source_syntax_artifact",
+      "specific_rationale": "From TCR V delta 1+ / TCR V delta 2- (rows 124-128), split at the spaces. Intended markers are TCR Vd1 and Vd2.",
+      "evidence_level": "source_traced",
+      "next_action": "report to SOULCAP (see reports/soulcap_feedback.tsv)",
       "registry_tokens": [
         "delta"
       ],
@@ -2411,6 +2587,10 @@
       "canonical": "DELTA1",
       "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#delta1",
+      "failure_category": "source_syntax_artifact",
+      "specific_rationale": "From TCR V delta1- (Ideal phenotypic, rows 123-124). Intended marker is TCR Vd1.",
+      "evidence_level": "source_traced",
+      "next_action": "report to SOULCAP (see reports/soulcap_feedback.tsv)",
       "registry_tokens": [
         "delta1"
       ],
@@ -2430,6 +2610,10 @@
       "canonical": "FCER1A",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#FceR1a",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "FceR1a"
       ],
@@ -2451,6 +2635,10 @@
       "canonical": "GAMMA",
       "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#gamma",
+      "failure_category": "source_syntax_artifact",
+      "specific_rationale": "From TCR V gamma 9+ / TCR V gamma 9- (rows 124-128), split at the spaces. Intended marker is TCR Vg9.",
+      "evidence_level": "source_traced",
+      "next_action": "report to SOULCAP (see reports/soulcap_feedback.tsv)",
       "registry_tokens": [
         "gamma"
       ],
@@ -2467,6 +2655,10 @@
       "canonical": "HLA-DR",
       "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#HLA-DR",
+      "failure_category": "protein_complex",
+      "specific_rationale": "HLA-DR is a heterodimer of the DR alpha chain (DRA) and one of several DR beta chains (DRB1/3/4/5). The registry uses DRA (PR:000002015), as do 6 asserted CL axioms; CL also uses the generic GO:0042613 (MHC class II protein complex) in 23 axioms, which is not DR-specific. OMIP-069 uses clone L243.",
+      "evidence_level": "ontology_checked",
+      "next_action": "ask David (DRA vs GO:0042613)",
       "registry_tokens": [
         "HLA-DR"
       ],
@@ -2603,6 +2795,10 @@
       "canonical": "IFNG",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#IFNg",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "IFNg"
       ],
@@ -2621,6 +2817,10 @@
       "canonical": "IGA",
       "rationale": "Registry notes document a non-single-protein or pan-marker representation.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#IgA",
+      "failure_category": "protein_family",
+      "specific_rationale": "Surface IgA is a two-gene family (IGHA1/IGHA2) assembled with light chains. CL models surface immunoglobulin with GO immunoglobulin complex terms; PRO has human IgA1/IgA2 B cell receptor complexes (PR:000050161, PR:000050162) and GO has GO:0071747 (IgA B cell receptor complex).",
+      "evidence_level": "ontology_checked",
+      "next_action": "use a GO immunoglobulin complex term as CL does (confirm with David)",
       "registry_tokens": [
         "IgA"
       ],
@@ -2641,6 +2841,10 @@
       "canonical": "IGD",
       "rationale": "Registry notes document a non-single-protein or pan-marker representation.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#IgD",
+      "failure_category": "protein_family",
+      "specific_rationale": "Surface IgD is the IgD immunoglobulin complex. CL uses GO:0071738 (IgD immunoglobulin complex) in 14 axioms (has/lacks plasma membrane part), e.g. on naive B cell. PRO also has PR:000050172 (IgD B cell receptor complex, human).",
+      "evidence_level": "ontology_checked",
+      "next_action": "use GO:0071738 as CL does (confirm with David)",
       "registry_tokens": [
         "IgD"
       ],
@@ -2672,6 +2876,10 @@
       "canonical": "IGE",
       "rationale": "Registry notes document a non-single-protein or pan-marker representation.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#IgE",
+      "failure_category": "protein_family",
+      "specific_rationale": "Surface IgE is an immunoglobulin complex. GO has GO:0071744 (IgE B cell receptor complex); CL uses GO:0071743 (IgE immunoglobulin complex, circulating) for secreted IgE. No human PRO IgE BCR complex found.",
+      "evidence_level": "ontology_checked",
+      "next_action": "use a GO immunoglobulin complex term (confirm with David)",
       "registry_tokens": [
         "IgE"
       ],
@@ -2694,6 +2902,10 @@
       "canonical": "IGG",
       "rationale": "Registry notes document a non-single-protein or pan-marker representation.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#IgG",
+      "failure_category": "protein_family",
+      "specific_rationale": "Surface IgG spans four subclass genes (IGHG1-4). CL uses GO:0071735 (IgG immunoglobulin complex); PRO has human IgG1-4 B cell receptor complexes (PR:000050313 to PR:000050316) and GO has GO:0071737 (IgG B cell receptor complex).",
+      "evidence_level": "ontology_checked",
+      "next_action": "use GO:0071735 as CL does (confirm with David)",
       "registry_tokens": [
         "IgG"
       ],
@@ -2714,6 +2926,10 @@
       "canonical": "IGM",
       "rationale": "Registry notes document a non-single-protein or pan-marker representation.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#IgM",
+      "failure_category": "protein_family",
+      "specific_rationale": "Surface IgM is the IgM immunoglobulin complex. CL uses GO:0071753 (IgM immunoglobulin complex) in 11 axioms, e.g. on naive B cell; GO also has GO:0071755 (IgM B cell receptor complex).",
+      "evidence_level": "ontology_checked",
+      "next_action": "use GO:0071753 as CL does (confirm with David)",
       "registry_tokens": [
         "IgM"
       ],
@@ -2738,6 +2954,10 @@
       "canonical": "IL-13",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#IL-13",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "IL-13"
       ],
@@ -2758,6 +2978,10 @@
       "canonical": "IL-17A",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#IL-17a",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "IL-17a"
       ],
@@ -2777,6 +3001,10 @@
       "canonical": "IL-4",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#IL-4",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "IL-4"
       ],
@@ -2797,6 +3025,10 @@
       "canonical": "IL-5",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#IL-5",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "IL-5"
       ],
@@ -2817,6 +3049,10 @@
       "canonical": "IL-9",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#IL-9",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "IL-9"
       ],
@@ -2836,6 +3072,10 @@
       "canonical": "MR1",
       "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#MR1",
+      "failure_category": "multimer_reagent",
+      "specific_rationale": "Every sheet use is MR1 Tetramer+ (rows 75-80, 108, 110-115): a tetramer of MR1 loaded with antigen that stains MAIT TCRs. It detects TCR specificity, not MR1 on the cell, so mapping it to MR1 protein (PR:Q95460) would be wrong. The token is split from MR1 Tetramer by the space.",
+      "evidence_level": "source_traced",
+      "next_action": "leave withheld; report spacing to SOULCAP",
       "registry_tokens": [
         "MR1"
       ],
@@ -2852,6 +3092,10 @@
       "canonical": "TCR",
       "rationale": "Registry notes document a non-single-protein or pan-marker representation.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#TCR",
+      "failure_category": "source_syntax_artifact",
+      "specific_rationale": "No sheet row uses TCR alone as a marker. The token comes from spaced names split by the tokenizer: TCR Vb11+, TCR VB11+, TCR V delta 1+ and TCR V gamma 9 (sheet rows 60, 76-80, 123-128). If a genuine pan-TCR marker were needed, CL uses GO:0042101 (T cell receptor complex).",
+      "evidence_level": "source_traced",
+      "next_action": "report to SOULCAP (see reports/soulcap_feedback.tsv)",
       "registry_tokens": [
         "TCR"
       ],
@@ -2871,6 +3115,10 @@
       "canonical": "TCRAB",
       "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#TCRab",
+      "failure_category": "protein_complex",
+      "specific_rationale": "Pan alpha-beta TCR antibodies recognise the assembled alpha-beta heterodimer. CL encodes this with GO:0042105 (alpha-beta T cell receptor complex), e.g. on CL:0000789 alpha-beta T cell. No PRO complex term found.",
+      "evidence_level": "ontology_checked",
+      "next_action": "use GO:0042105 as CL does (confirm with David)",
       "registry_tokens": [
         "TCRab"
       ],
@@ -2909,6 +3157,10 @@
       "canonical": "TCRGD",
       "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#TCRgd",
+      "failure_category": "protein_complex",
+      "specific_rationale": "Pan gamma-delta TCR antibodies (clone B1.1 in OMIP-069) recognise the assembled gamma-delta heterodimer. CL encodes this with GO:0042106 (gamma-delta T cell receptor complex) on CL:0000798. No PRO complex term found.",
+      "evidence_level": "ontology_checked",
+      "next_action": "use GO:0042106 as CL does (confirm with David)",
       "registry_tokens": [
         "TCRgd"
       ],
@@ -2947,6 +3199,10 @@
       "canonical": "TCRVA24",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVa24",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "TCRVa24",
         "TCRva24"
@@ -2964,6 +3220,10 @@
       "canonical": "TCRVA24-JA18",
       "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVa24-Ja18",
+      "failure_category": "multi_gene_product",
+      "specific_rationale": "The invariant iNKT TCR alpha chain is a rearrangement of two gene segments, TRAV10 (V alpha 24) and TRAJ18. The registry maps only the V segment (PR:A0A0B4J240, TRAV10), which would also match non-invariant V alpha 24 TCRs.",
+      "evidence_level": "registry_note_only",
+      "next_action": "leave withheld",
       "registry_tokens": [
         "TCRVa24-Ja18"
       ],
@@ -2980,6 +3240,10 @@
       "canonical": "TCRVA7.2",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVa7.2",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "TCRVa7.2"
       ],
@@ -2996,6 +3260,10 @@
       "canonical": "TCRVB11",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVb11",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "TCRVb11"
       ],
@@ -3012,6 +3280,10 @@
       "canonical": "TCRVD2",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVd2",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "TCRVd2"
       ],
@@ -3030,6 +3302,10 @@
       "canonical": "TCRVG9",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVg9",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "TCRVg9"
       ],
@@ -3048,6 +3324,10 @@
       "canonical": "TETRAMER",
       "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#Tetramer",
+      "failure_category": "source_syntax_artifact",
+      "specific_rationale": "Second half of the spaced names MR1 Tetramer+ and CD1d-a-GalCer Tetramer+ (rows 60, 75-80, 108, 110-115). Not a marker.",
+      "evidence_level": "source_traced",
+      "next_action": "report to SOULCAP (see reports/soulcap_feedback.tsv)",
       "registry_tokens": [
         "Tetramer"
       ],
@@ -3064,6 +3344,10 @@
       "canonical": "V",
       "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#V",
+      "failure_category": "source_syntax_artifact",
+      "specific_rationale": "From TCR V delta1- (Ideal phenotypic, rows 123-124), which parses without error but splits into TCR / V / delta1, and from TCR V delta 2+ style names (rows 124-128). Intended markers are TCR Vd1, Vd2 and Vg9 (written TCRVd2+, TCRVg9+ in row 123).",
+      "evidence_level": "source_traced",
+      "next_action": "report to SOULCAP (see reports/soulcap_feedback.tsv)",
       "registry_tokens": [
         "V"
       ],
@@ -3083,6 +3367,10 @@
       "canonical": "TCRVB11",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#VB11",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "VB11",
         "Vb11"
@@ -3100,6 +3388,10 @@
       "canonical": "VD1",
       "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
       "source_ref": "marker_mappings/marker_protein_gene.csv#Vd1",
+      "failure_category": "",
+      "specific_rationale": "",
+      "evidence_level": "",
+      "next_action": "",
       "registry_tokens": [
         "Vd1"
       ],
@@ -3297,6 +3589,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001002",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -3318,6 +3611,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -3339,6 +3633,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001289",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": [
               {
@@ -3360,6 +3655,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001889",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": [
               {
@@ -3604,6 +3900,7 @@
           {
             "sense": "high",
             "pr": "PR:000001024",
+            "relation": "RO:0015015",
             "asserted": "True",
             "paths": [
               {
@@ -3625,6 +3922,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001002",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -3646,6 +3944,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -3667,6 +3966,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001289",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -3688,12 +3988,14 @@
           {
             "sense": "negative",
             "pr": "PR:000001483",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": []
           },
           {
             "sense": "negative",
             "pr": "PR:000001889",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -3715,12 +4017,14 @@
           {
             "sense": "negative",
             "pr": "PR:000002015",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:000001319",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": [
               {
@@ -3948,6 +4252,7 @@
           {
             "sense": "low",
             "pr": "PR:000001024",
+            "relation": "RO:0015016",
             "asserted": "True",
             "paths": [
               {
@@ -3969,6 +4274,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001002",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -3990,6 +4296,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -4011,6 +4318,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001289",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -4032,6 +4340,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001889",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -4053,12 +4362,14 @@
           {
             "sense": "negative",
             "pr": "PR:000002015",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:000001483",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           }
@@ -4286,6 +4597,7 @@
           {
             "sense": "low",
             "pr": "PR:000001024",
+            "relation": "RO:0015016",
             "asserted": "True",
             "paths": [
               {
@@ -4307,6 +4619,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001002",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -4328,6 +4641,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -4349,6 +4663,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001289",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -4370,6 +4685,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001889",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -4391,12 +4707,14 @@
           {
             "sense": "negative",
             "pr": "PR:000002015",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:000001483",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           }
@@ -4624,6 +4942,7 @@
           {
             "sense": "low",
             "pr": "PR:000001024",
+            "relation": "RO:0015016",
             "asserted": "True",
             "paths": [
               {
@@ -4645,6 +4964,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001002",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -4666,6 +4986,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -4687,6 +5008,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001289",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -4708,6 +5030,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001889",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -4729,12 +5052,14 @@
           {
             "sense": "negative",
             "pr": "PR:000002015",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:000001483",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           }
@@ -4901,6 +5226,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001002",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -4922,6 +5248,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -4943,6 +5270,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001003",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -4964,6 +5292,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001024",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -4985,6 +5314,7 @@
           {
             "sense": "positive",
             "pr": "PR:000002065",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -5006,18 +5336,21 @@
           {
             "sense": "positive",
             "pr": "PR:P10721",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P13591",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P28906",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           }
@@ -5187,6 +5520,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001002",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": [
               {
@@ -5208,6 +5542,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": [
               {
@@ -5416,6 +5751,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001002",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -5437,6 +5773,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -5693,6 +6030,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001002",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -5714,6 +6052,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -5735,6 +6074,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001380",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -5756,6 +6096,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001869",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -5784,24 +6125,28 @@
           {
             "sense": "positive",
             "pr": "PR:000001874",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:000001941",
+            "relation": "BFO:0000051",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P01589",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P16871",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": [
               {
@@ -5816,12 +6161,14 @@
           {
             "sense": "positive",
             "pr": "PR:P23771",
+            "relation": "BFO:0000051",
             "asserted": "True",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:Q12918",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": [
               {
@@ -5843,6 +6190,7 @@
           {
             "sense": "positive",
             "pr": "PR:Q9Y5Y4",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": [
               {
@@ -6077,6 +6425,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001002",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -6098,6 +6447,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -6119,6 +6469,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001869",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -6147,12 +6498,14 @@
           {
             "sense": "positive",
             "pr": "PR:000003455",
+            "relation": "BFO:0000051",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P16871",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": [
               {
@@ -6383,6 +6736,7 @@
           {
             "sense": "high",
             "pr": "PR:000001013",
+            "relation": "RO:0015015",
             "asserted": "True",
             "paths": [
               {
@@ -6411,6 +6765,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001002",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -6432,6 +6787,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001003",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -6453,6 +6809,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -6474,6 +6831,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001024",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -6495,6 +6853,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001289",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -6818,6 +7177,7 @@
           {
             "sense": "high",
             "pr": "PR:000001013",
+            "relation": "RO:0015015",
             "asserted": "False",
             "paths": [
               {
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           {
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+            "relation": "CL:4030046",
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@@ -13549,6 +14021,7 @@
           {
             "sense": "negative",
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+            "relation": "CL:4030046",
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@@ -13570,6 +14043,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001963",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": [
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@@ -13598,6 +14072,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001002",
+            "relation": "RO:0002104",
             "asserted": "False",
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               {
@@ -13619,6 +14094,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001289",
+            "relation": "RO:0002104",
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@@ -13922,6 +14398,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
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@@ -13943,6 +14420,7 @@
           {
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+            "relation": "CL:4030046",
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@@ -13964,6 +14442,7 @@
           {
             "sense": "negative",
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+            "relation": "CL:4030046",
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@@ -13992,6 +14471,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001002",
+            "relation": "RO:0002104",
             "asserted": "False",
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@@ -14013,6 +14493,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001289",
+            "relation": "RO:0002104",
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@@ -14248,6 +14729,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
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@@ -14269,6 +14751,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001935",
+            "relation": "CL:4030046",
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@@ -14290,6 +14773,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001002",
+            "relation": "RO:0002104",
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@@ -14311,6 +14795,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001289",
+            "relation": "RO:0002104",
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@@ -14582,6 +15067,7 @@
           {
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+            "relation": "CL:4030046",
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@@ -14603,6 +15089,7 @@
           {
             "sense": "negative",
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+            "relation": "CL:4030046",
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@@ -14624,6 +15111,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001002",
+            "relation": "RO:0002104",
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@@ -14645,6 +15133,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001289",
+            "relation": "RO:0002104",
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@@ -14666,6 +15155,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001963",
+            "relation": "RO:0002104",
             "asserted": "True",
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@@ -14924,6 +15414,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
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             "paths": [
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@@ -14945,6 +15436,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001935",
+            "relation": "CL:4030046",
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             "paths": [
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@@ -14966,6 +15458,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001002",
+            "relation": "RO:0002104",
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@@ -14987,6 +15480,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001289",
+            "relation": "RO:0002104",
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@@ -15258,6 +15752,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
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@@ -15279,6 +15774,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001935",
+            "relation": "CL:4030046",
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@@ -15300,6 +15796,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001002",
+            "relation": "RO:0002104",
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             "paths": [
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@@ -15321,6 +15818,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001289",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -15342,6 +15840,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001963",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": [
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@@ -15644,6 +16143,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
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@@ -15665,6 +16165,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001935",
+            "relation": "CL:4030046",
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             "paths": [
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@@ -15686,6 +16187,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001002",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -15707,6 +16209,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001289",
+            "relation": "RO:0002104",
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             "paths": [
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@@ -15728,6 +16231,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001963",
+            "relation": "RO:0002104",
             "asserted": "False",
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@@ -16030,6 +16534,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -16051,6 +16556,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001935",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -16072,6 +16578,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001002",
+            "relation": "RO:0002104",
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             "paths": [
               {
@@ -16093,6 +16600,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001289",
+            "relation": "RO:0002104",
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             "paths": [
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@@ -16114,6 +16622,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001963",
+            "relation": "RO:0002104",
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@@ -16416,6 +16925,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001020",
+            "relation": "CL:4030046",
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@@ -16437,6 +16947,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001935",
+            "relation": "CL:4030046",
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             "paths": [
               {
@@ -16458,6 +16969,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001002",
+            "relation": "RO:0002104",
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             "paths": [
               {
@@ -16479,6 +16991,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001289",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -16500,6 +17013,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001963",
+            "relation": "RO:0002104",
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             "paths": [
               {
@@ -17120,12 +17634,14 @@
           {
             "sense": "negative",
             "pr": "PR:000025402",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:000001004",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": [
               {
@@ -17262,6 +17778,19 @@
                 "asserted": "True"
               }
             ]
+          },
+          {
+            "column": "Required phenotypic markers",
+            "clause": "CD8:positive",
+            "assertion": "direct",
+            "axioms": [
+              {
+                "pr": "PR:000025402",
+                "relation": "RO:0002104",
+                "sense": "positive",
+                "asserted": "True"
+              }
+            ]
           }
         ],
         "contradictions": [],
@@ -17301,10 +17830,6 @@
           {
             "column": "Required phenotypic markers",
             "clause": "(TCRAB:positive OR TCRGD:negative)"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD8:positive"
           }
         ],
         "ideal_conflicts": [],
@@ -17325,6 +17850,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001004",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": [
               {
@@ -17346,6 +17872,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001084",
+            "relation": "BFO:0000051",
             "asserted": "False",
             "paths": [
               {
@@ -17367,12 +17894,26 @@
           {
             "sense": "positive",
             "pr": "PR:000025402",
+            "relation": "RO:0002104",
             "asserted": "True",
-            "paths": []
+            "paths": [
+              {
+                "via": "reviewed_surface_assertion",
+                "source_token": "CD8",
+                "tokens": [
+                  "CD8"
+                ],
+                "rule_id": "whole_cd8_surface_positive_v1",
+                "source_ref": "http://purl.obolibrary.org/obo/PR_000025402",
+                "review_ref": "archive/2026-09_resolver_experiments/regression-followup/README.md#scoped-correction",
+                "interpretation": "marker_assertion_not_molecular_equivalence"
+              }
+            ]
           },
           {
             "sense": "positive",
             "pr": "PR:000025403",
+            "relation": "BFO:0000051",
             "asserted": "False",
             "paths": [
               {
@@ -17553,6 +18094,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001004",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": [
               {
@@ -17574,6 +18116,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001084",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": [
               {
@@ -17749,12 +18292,14 @@
           {
             "sense": "negative",
             "pr": "PR:000025402",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:000001004",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": [
               {
@@ -17887,6 +18432,19 @@
                 "asserted": "True"
               }
             ]
+          },
+          {
+            "column": "Required phenotypic markers",
+            "clause": "CD8:positive",
+            "assertion": "direct",
+            "axioms": [
+              {
+                "pr": "PR:000025402",
+                "relation": "RO:0002104",
+                "sense": "positive",
+                "asserted": "True"
+              }
+            ]
           }
         ],
         "contradictions": [],
@@ -17922,10 +18480,6 @@
           {
             "column": "Required phenotypic markers",
             "clause": "CD3:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD8:positive"
           }
         ],
         "ideal_conflicts": [],
@@ -17946,6 +18500,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001004",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": [
               {
@@ -17967,6 +18522,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001084",
+            "relation": "BFO:0000051",
             "asserted": "False",
             "paths": [
               {
@@ -17988,12 +18544,26 @@
           {
             "sense": "positive",
             "pr": "PR:000025402",
+            "relation": "RO:0002104",
             "asserted": "True",
-            "paths": []
+            "paths": [
+              {
+                "via": "reviewed_surface_assertion",
+                "source_token": "CD8",
+                "tokens": [
+                  "CD8"
+                ],
+                "rule_id": "whole_cd8_surface_positive_v1",
+                "source_ref": "http://purl.obolibrary.org/obo/PR_000025402",
+                "review_ref": "archive/2026-09_resolver_experiments/regression-followup/README.md#scoped-correction",
+                "interpretation": "marker_assertion_not_molecular_equivalence"
+              }
+            ]
           },
           {
             "sense": "positive",
             "pr": "PR:000025403",
+            "relation": "BFO:0000051",
             "asserted": "False",
             "paths": [
               {
@@ -19059,6 +19629,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001024",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -19080,12 +19651,14 @@
           {
             "sense": "positive",
             "pr": "PR:000001874",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P13591",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           }
@@ -19251,6 +19824,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001024",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -19272,12 +19846,14 @@
           {
             "sense": "positive",
             "pr": "PR:000001874",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P13591",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           }
@@ -19443,6 +20019,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001024",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -19464,12 +20041,14 @@
           {
             "sense": "positive",
             "pr": "PR:000001874",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P13591",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           }
@@ -19627,6 +20206,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001024",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -19648,12 +20228,14 @@
           {
             "sense": "positive",
             "pr": "PR:000001874",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P13591",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           }
@@ -19827,6 +20409,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001024",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -19848,12 +20431,14 @@
           {
             "sense": "positive",
             "pr": "PR:000001874",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P13591",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           }
@@ -20027,6 +20612,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001024",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -20048,12 +20634,14 @@
           {
             "sense": "positive",
             "pr": "PR:000001874",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P13591",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           }
@@ -20227,6 +20815,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001024",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -20248,12 +20837,14 @@
           {
             "sense": "positive",
             "pr": "PR:000001874",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P13591",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           }
@@ -20427,6 +21018,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001024",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -20448,12 +21040,14 @@
           {
             "sense": "positive",
             "pr": "PR:000001874",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P13591",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           }
@@ -20611,6 +21205,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001024",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -20632,12 +21227,14 @@
           {
             "sense": "positive",
             "pr": "PR:000001874",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P13591",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           }
@@ -20811,6 +21408,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001024",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -20832,12 +21430,14 @@
           {
             "sense": "positive",
             "pr": "PR:000001874",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P13591",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           }
@@ -21011,6 +21611,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001024",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -21032,12 +21633,14 @@
           {
             "sense": "positive",
             "pr": "PR:000001874",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P13591",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           }
@@ -21211,6 +21814,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001024",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -21232,12 +21836,14 @@
           {
             "sense": "positive",
             "pr": "PR:000001874",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P13591",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           }
@@ -21411,6 +22017,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001024",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -21432,12 +22039,14 @@
           {
             "sense": "positive",
             "pr": "PR:000001874",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:P13591",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": []
           }
@@ -21559,6 +22168,7 @@
           {
             "sense": "high",
             "pr": "PR:000001318",
+            "relation": "RO:0015015",
             "asserted": "True",
             "paths": [
               {
@@ -21580,6 +22190,7 @@
           {
             "sense": "low",
             "pr": "PR:000001307",
+            "relation": "RO:0015016",
             "asserted": "True",
             "paths": [
               {
@@ -21601,6 +22212,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001006",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -21615,6 +22227,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001015",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": [
               {
@@ -21629,6 +22242,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001203",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": [
               {
@@ -21650,6 +22264,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001869",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": [
               {
@@ -21798,6 +22413,7 @@
           {
             "sense": "high",
             "pr": "PR:000001318",
+            "relation": "RO:0015015",
             "asserted": "False",
             "paths": [
               {
@@ -21819,6 +22435,7 @@
           {
             "sense": "low",
             "pr": "PR:000001307",
+            "relation": "RO:0015016",
             "asserted": "False",
             "paths": [
               {
@@ -21840,6 +22457,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001380",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": [
               {
@@ -21861,12 +22479,14 @@
           {
             "sense": "negative",
             "pr": "PR:000025402",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:000001004",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -21888,6 +22508,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001006",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -21902,6 +22523,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001015",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -21916,6 +22538,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001203",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -21937,6 +22560,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001869",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -22068,6 +22692,7 @@
           "CD45RA",
           "CD62",
           "CD62L",
+          "CD8",
           "CD8A",
           "CDW127",
           "CDW197",
@@ -22087,6 +22712,7 @@
           {
             "sense": "high",
             "pr": "PR:000001318",
+            "relation": "RO:0015015",
             "asserted": "False",
             "paths": [
               {
@@ -22108,6 +22734,7 @@
           {
             "sense": "low",
             "pr": "PR:000001307",
+            "relation": "RO:0015016",
             "asserted": "False",
             "paths": [
               {
@@ -22129,6 +22756,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001004",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -22150,6 +22778,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001380",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": [
               {
@@ -22171,6 +22800,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001006",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -22185,6 +22815,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001015",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -22199,6 +22830,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001084",
+            "relation": "BFO:0000051",
             "asserted": "False",
             "paths": [
               {
@@ -22220,6 +22852,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001203",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -22241,6 +22874,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001869",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -22269,12 +22903,26 @@
           {
             "sense": "positive",
             "pr": "PR:000025402",
+            "relation": "RO:0002104",
             "asserted": "False",
-            "paths": []
+            "paths": [
+              {
+                "via": "reviewed_surface_assertion",
+                "source_token": "CD8",
+                "tokens": [
+                  "CD8"
+                ],
+                "rule_id": "whole_cd8_surface_positive_v1",
+                "source_ref": "http://purl.obolibrary.org/obo/PR_000025402",
+                "review_ref": "archive/2026-09_resolver_experiments/regression-followup/README.md#scoped-correction",
+                "interpretation": "marker_assertion_not_molecular_equivalence"
+              }
+            ]
           },
           {
             "sense": "positive",
             "pr": "PR:000025403",
+            "relation": "BFO:0000051",
             "asserted": "False",
             "paths": [
               {
@@ -22403,6 +23051,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001006",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -22417,6 +23066,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001015",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": [
               {
@@ -22431,6 +23081,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001380",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -22452,12 +23103,14 @@
           {
             "sense": "negative",
             "pr": "PR:000025402",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:000001004",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -22479,6 +23132,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001006",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -22493,6 +23147,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001017",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -22507,6 +23162,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001203",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": [
               {
@@ -22528,6 +23184,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001869",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -22654,6 +23311,7 @@
           "CD45",
           "CD45RA",
           "CD45RO",
+          "CD8",
           "CD8A",
           "CDW127",
           "CDW197"
@@ -22672,6 +23330,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001004",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -22693,6 +23352,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001006",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -22707,6 +23367,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001015",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": [
               {
@@ -22721,6 +23382,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001380",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -22742,6 +23404,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001006",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -22756,6 +23419,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001017",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -22770,6 +23434,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001084",
+            "relation": "BFO:0000051",
             "asserted": "False",
             "paths": [
               {
@@ -22791,6 +23456,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001203",
+            "relation": "RO:0002104",
             "asserted": "True",
             "paths": [
               {
@@ -22812,6 +23478,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001869",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -22840,12 +23507,26 @@
           {
             "sense": "positive",
             "pr": "PR:000025402",
+            "relation": "RO:0002104",
             "asserted": "False",
-            "paths": []
+            "paths": [
+              {
+                "via": "reviewed_surface_assertion",
+                "source_token": "CD8",
+                "tokens": [
+                  "CD8"
+                ],
+                "rule_id": "whole_cd8_surface_positive_v1",
+                "source_ref": "http://purl.obolibrary.org/obo/PR_000025402",
+                "review_ref": "archive/2026-09_resolver_experiments/regression-followup/README.md#scoped-correction",
+                "interpretation": "marker_assertion_not_molecular_equivalence"
+              }
+            ]
           },
           {
             "sense": "positive",
             "pr": "PR:000025403",
+            "relation": "BFO:0000051",
             "asserted": "False",
             "paths": [
               {
@@ -22974,6 +23655,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001006",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -22988,6 +23670,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001015",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": [
               {
@@ -23002,6 +23685,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001203",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": [
               {
@@ -23023,6 +23707,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001380",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -23044,12 +23729,14 @@
           {
             "sense": "negative",
             "pr": "PR:000025402",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": []
           },
           {
             "sense": "positive",
             "pr": "PR:000001004",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -23071,6 +23758,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001006",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -23085,6 +23773,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001017",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -23099,6 +23788,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001869",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -23225,6 +23915,7 @@
           "CD45",
           "CD45RA",
           "CD45RO",
+          "CD8",
           "CD8A",
           "CDW127",
           "CDW197"
@@ -23243,6 +23934,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001004",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -23264,6 +23956,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001006",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -23278,6 +23971,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001015",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": [
               {
@@ -23292,6 +23986,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001203",
+            "relation": "CL:4030046",
             "asserted": "True",
             "paths": [
               {
@@ -23313,6 +24008,7 @@
           {
             "sense": "negative",
             "pr": "PR:000001380",
+            "relation": "CL:4030046",
             "asserted": "False",
             "paths": [
               {
@@ -23334,6 +24030,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001006",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -23348,6 +24045,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001017",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -23362,6 +24060,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001084",
+            "relation": "BFO:0000051",
             "asserted": "False",
             "paths": [
               {
@@ -23383,6 +24082,7 @@
           {
             "sense": "positive",
             "pr": "PR:000001869",
+            "relation": "RO:0002104",
             "asserted": "False",
             "paths": [
               {
@@ -23411,12 +24111,26 @@
           {
             "sense": "positive",
             "pr": "PR:000025402",
+            "relation": "RO:0002104",
             "asserted": "False",
-            "paths": []
+            "paths": [
+              {
+                "via": "reviewed_surface_assertion",
+                "source_token": "CD8",
+                "tokens": [
+                  "CD8"
+                ],
+                "rule_id": "whole_cd8_surface_positive_v1",
+                "source_ref": "http://purl.obolibrary.org/obo/PR_000025402",
+                "review_ref": "archive/2026-09_resolver_experiments/regression-followup/README.md#scoped-correction",
+                "interpretation": "marker_assertion_not_molecular_equivalence"
+              }
+            ]
           },
           {
             "sense": "positive",
             "pr": "PR:000025403",
+            "relation": "BFO:0000051",
             "asserted": "False",
             "paths": [
               {
diff --git a/reports/marker_resolution_audit.md b/reports/marker_resolution_audit.md
index ff8cdf1..274df30 100644
--- a/reports/marker_resolution_audit.md
+++ b/reports/marker_resolution_audit.md
@@ -61,7 +61,7 @@ Same source and axiom snapshots; no lexical expansion. Counts describe computati
 | CD57 | reagent_gate / withhold | 0 → 0 | Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein. |
 | CD64 | single_protein / allow | 1 → 1 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. |
 | CD66B | single_protein / allow | 21 → 21 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. |
-| CD8 | unresolved / withhold | 318 → 0 | Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required. |
+| CD8 | unresolved / withhold | 318 → 39 | Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required. |
 | CXCR3 | single_protein / allow | 0 → 8 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. |
 | CXCR5 | single_protein / allow | 0 → 2 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. |
 | DELTA | unresolved / withhold | 0 → 0 | No PRO identity recorded; possible source artifact or unresolved marker requires clarification. |
@@ -95,4 +95,31 @@ Same source and axiom snapshots; no lexical expansion. Counts describe computati
 | VB11 | single_protein / allow | 0 → 0 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. |
 | VD1 | single_protein / allow | 0 → 0 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. |
 
+## Why each withheld marker is withheld
+
+| Marker | Category | Why | Evidence | Next action |
+|---|---|---|---|---|
+| CD15 | carbohydrate_epitope | CD15 antibodies detect the Lewis X (SSEA-1) carbohydrate, not a protein. The registry PRO ID (PR:000001456) is FUT4, the fucosyltransferase that makes it; PRO lists CD15 as an exact synonym of FUT4 and CL uses FUT4 in 8 asserted CD15 axioms. Possible CHEBI representation: CHEBI:62287 (Gal-(1->4)-[Fuc-(1->3)]-GlcNAc), structural match to be confirmed. | ontology_checked | leave withheld; propose CL/PRO issue on CD15 = FUT4 |
+| CD16 | multi_gene_product | Human CD16 is two genes: FCGR3A (CD16a, PR:000001484) and FCGR3B (CD16b, PR:000001485). The registry and CL use PR:000001483, which PRO defines as the product of the mouse Fcgr3 gene or a 1:1 ortholog, so it does not clearly cover either human gene. OMIP-069 uses clone 3G8, which binds both CD16a and CD16b (PMC12606087). CD16 is mostly used in the shared exclusion panel (CD15-/CD66b-) CD16-, which mirrors SOULCAP's CD16hi neutrophil definition; neutrophils carry CD16b, so CD16a alone would misrepresent exclusion gates. | ontology_checked | ask David (likely lacks CD16a and lacks CD16b for exclusion); propose CL issue on PR:000001483 for human cell types |
+| CD1D-A-GALCER | lipid_antigen_reagent | First half of CD1d-a-GalCer Tetramer+ (rows 60, 76-80, 108, 110-115): CD1d loaded with the lipid alpha-galactosylceramide, a reagent that stains iNKT TCRs. Not a protein marker on the cell. | source_traced | leave withheld; report spacing to SOULCAP |
+| CD3 | protein_complex | CD3 is a multi-chain complex (CD3 gamma, delta, epsilon, zeta). PRO has no general CD3 complex term: its only CD3 complex is the phosphorylated CD3 epsilon:gamma dimer (PR:000025781). Options are CD3 epsilon (PR:000001020, which CL uses in all 23 asserted CD3-negative axioms) or the family term PR:000001018 (CD3 delta/epsilon/gamma). CL encodes T-cell identity with GO TCR complexes (GO:0042101/GO:0042105/GO:0042106). OMIP-069 uses clone SK7. Blocks 71 cell types. | ontology_checked | ask David; decision needed: see docs/marker_resolution.md#decisions-for-david |
+| CD57 | carbohydrate_epitope | CD57 antibodies (clone HNK-1 in OMIP-069) detect the HNK-1 sulfoglucuronyl carbohydrate, not a protein. B3GAT1 (PR:000001440) is the enzyme that makes it. Possible CHEBI representation: CHEBI:137065 (GlcA3S-(1->3)-Gal-(1->4)-GlcNAc), structural match to be confirmed. | ontology_checked | leave withheld |
+| CD8 | protein_complex | CD8 is expressed as a CD8 alpha-alpha homodimer or a CD8 alpha-beta heterodimer. PR:000025402 is specifically CD8 alpha-beta (exact synonym CD8alphabeta; components CD8 alpha + CD8 beta), so it excludes CD8aa+ gamma-delta T and NK cells. CD8 alpha (PR:000001084) covers both; CD8 beta is PR:000001085. CL uses PR:000001084, PR:000025402 and PR:000025403. OMIP-069 uses clone SK1. | ontology_checked | ask David; decision needed: see docs/marker_resolution.md#decisions-for-david |
+| DELTA | source_syntax_artifact | From TCR V delta 1+ / TCR V delta 2- (rows 124-128), split at the spaces. Intended markers are TCR Vd1 and Vd2. | source_traced | report to SOULCAP (see reports/soulcap_feedback.tsv) |
+| DELTA1 | source_syntax_artifact | From TCR V delta1- (Ideal phenotypic, rows 123-124). Intended marker is TCR Vd1. | source_traced | report to SOULCAP (see reports/soulcap_feedback.tsv) |
+| GAMMA | source_syntax_artifact | From TCR V gamma 9+ / TCR V gamma 9- (rows 124-128), split at the spaces. Intended marker is TCR Vg9. | source_traced | report to SOULCAP (see reports/soulcap_feedback.tsv) |
+| HLA-DR | protein_complex | HLA-DR is a heterodimer of the DR alpha chain (DRA) and one of several DR beta chains (DRB1/3/4/5). The registry uses DRA (PR:000002015), as do 6 asserted CL axioms; CL also uses the generic GO:0042613 (MHC class II protein complex) in 23 axioms, which is not DR-specific. OMIP-069 uses clone L243. | ontology_checked | ask David (DRA vs GO:0042613) |
+| IGA | protein_family | Surface IgA is a two-gene family (IGHA1/IGHA2) assembled with light chains. CL models surface immunoglobulin with GO immunoglobulin complex terms; PRO has human IgA1/IgA2 B cell receptor complexes (PR:000050161, PR:000050162) and GO has GO:0071747 (IgA B cell receptor complex). | ontology_checked | use a GO immunoglobulin complex term as CL does (confirm with David) |
+| IGD | protein_family | Surface IgD is the IgD immunoglobulin complex. CL uses GO:0071738 (IgD immunoglobulin complex) in 14 axioms (has/lacks plasma membrane part), e.g. on naive B cell. PRO also has PR:000050172 (IgD B cell receptor complex, human). | ontology_checked | use GO:0071738 as CL does (confirm with David) |
+| IGE | protein_family | Surface IgE is an immunoglobulin complex. GO has GO:0071744 (IgE B cell receptor complex); CL uses GO:0071743 (IgE immunoglobulin complex, circulating) for secreted IgE. No human PRO IgE BCR complex found. | ontology_checked | use a GO immunoglobulin complex term (confirm with David) |
+| IGG | protein_family | Surface IgG spans four subclass genes (IGHG1-4). CL uses GO:0071735 (IgG immunoglobulin complex); PRO has human IgG1-4 B cell receptor complexes (PR:000050313 to PR:000050316) and GO has GO:0071737 (IgG B cell receptor complex). | ontology_checked | use GO:0071735 as CL does (confirm with David) |
+| IGM | protein_family | Surface IgM is the IgM immunoglobulin complex. CL uses GO:0071753 (IgM immunoglobulin complex) in 11 axioms, e.g. on naive B cell; GO also has GO:0071755 (IgM B cell receptor complex). | ontology_checked | use GO:0071753 as CL does (confirm with David) |
+| MR1 | multimer_reagent | Every sheet use is MR1 Tetramer+ (rows 75-80, 108, 110-115): a tetramer of MR1 loaded with antigen that stains MAIT TCRs. It detects TCR specificity, not MR1 on the cell, so mapping it to MR1 protein (PR:Q95460) would be wrong. The token is split from MR1 Tetramer by the space. | source_traced | leave withheld; report spacing to SOULCAP |
+| TCR | source_syntax_artifact | No sheet row uses TCR alone as a marker. The token comes from spaced names split by the tokenizer: TCR Vb11+, TCR VB11+, TCR V delta 1+ and TCR V gamma 9 (sheet rows 60, 76-80, 123-128). If a genuine pan-TCR marker were needed, CL uses GO:0042101 (T cell receptor complex). | source_traced | report to SOULCAP (see reports/soulcap_feedback.tsv) |
+| TCRAB | protein_complex | Pan alpha-beta TCR antibodies recognise the assembled alpha-beta heterodimer. CL encodes this with GO:0042105 (alpha-beta T cell receptor complex), e.g. on CL:0000789 alpha-beta T cell. No PRO complex term found. | ontology_checked | use GO:0042105 as CL does (confirm with David) |
+| TCRGD | protein_complex | Pan gamma-delta TCR antibodies (clone B1.1 in OMIP-069) recognise the assembled gamma-delta heterodimer. CL encodes this with GO:0042106 (gamma-delta T cell receptor complex) on CL:0000798. No PRO complex term found. | ontology_checked | use GO:0042106 as CL does (confirm with David) |
+| TCRVA24-JA18 | multi_gene_product | The invariant iNKT TCR alpha chain is a rearrangement of two gene segments, TRAV10 (V alpha 24) and TRAJ18. The registry maps only the V segment (PR:A0A0B4J240, TRAV10), which would also match non-invariant V alpha 24 TCRs. | registry_note_only | leave withheld |
+| TETRAMER | source_syntax_artifact | Second half of the spaced names MR1 Tetramer+ and CD1d-a-GalCer Tetramer+ (rows 60, 75-80, 108, 110-115). Not a marker. | source_traced | report to SOULCAP (see reports/soulcap_feedback.tsv) |
+| V | source_syntax_artifact | From TCR V delta1- (Ideal phenotypic, rows 123-124), which parses without error but splits into TCR / V / delta1, and from TCR V delta 2+ style names (rows 124-128). Intended markers are TCR Vd1, Vd2 and Vg9 (written TCRVd2+, TCRVg9+ in row 123). | source_traced | report to SOULCAP (see reports/soulcap_feedback.tsv) |
+
 See JSON for per-mapping evidence, source usage, policy issues, and input hashes.
diff --git a/reports/marker_resolution_audit.tsv b/reports/marker_resolution_audit.tsv
index 5156155..dca2583 100644
--- a/reports/marker_resolution_audit.tsv
+++ b/reports/marker_resolution_audit.tsv
@@ -1,74 +1,74 @@
-marker_token	representation	protein_resolution	canonical	legacy_axiom_rows	enhanced_axiom_rows	gained	lost	rationale	source_ref
-CCR4	single_protein	allow	CCR4	0	4	4	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CCR4
-CCR6	single_protein	allow	CCR6	0	8	8	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CCR6
-CD10	single_protein	allow	CD10	20	20	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD10
-CD117	single_protein	allow	CD117	49	44	0	5	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD117
-CD11C	single_protein	allow	CD11C	85	85	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD11c
-CD123	single_protein	allow	CD123	31	31	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD123
-CD127	single_protein	allow	CD127	58	53	0	5	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD127
-CD138	single_protein	allow	CD138	52	52	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD138
-CD14	single_protein	allow	CD14	108	108	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD14
-CD141	single_protein	allow	CD141	1	1	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD141
-CD15	unresolved	withhold	CD15	15	0	0	15	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#CD15
-CD16	unresolved	withhold	CD16	29	0	0	29	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#CD16
-CD161	single_protein	allow	CD161	19	2	0	17	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD161
-CD172A	single_protein	allow	CD172A	6	6	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD172a
-CD183	single_protein	allow	CD183	8	8	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD183
-CD185	single_protein	allow	CD185	2	2	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD185
-CD19	single_protein	allow	CD19	335	335	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD19
-CD193	single_protein	allow	CD193	16	16	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD193
-CD194	single_protein	allow	CCR4	4	4	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD194
-CD196	single_protein	allow	CCR6	8	8	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD196
-CD198	single_protein	allow	CD198	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD198
-CD1C	single_protein	allow	CD1C	1	1	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD1c
-CD1D-A-GALCER	reagent_gate	withhold	CD1D-A-GALCER	0	0	0	0	Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.	marker_mappings/marker_protein_gene.csv#CD1d-a-GalCer
-CD20	single_protein	allow	CD20	284	284	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD20
-CD21	single_protein	allow	CD21	11	11	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD21
-CD24	single_protein	allow	CD24	38	38	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD24
-CD25	single_protein	allow	CD25	41	40	0	1	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD25
-CD27	single_protein	allow	CD27	49	49	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD27
-CD294	single_protein	allow	CD294	1	1	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD294
-CD3	unresolved	withhold	CD3	330	0	0	330	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#CD3
-CD303	single_protein	allow	CD303	3	3	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD303
-CD33	single_protein	allow	CD33	15	13	0	2	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD33
-CD34	single_protein	allow	CD34	135	130	0	5	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD34
-CD38	single_protein	allow	CD38	59	59	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD38
-CD4	single_protein	allow	CD4	196	196	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD4
-CD45	single_protein	allow	CD45	92	92	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD45
-CD56	single_protein	allow	CD56	181	177	0	4	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD56
-CD57	reagent_gate	withhold	CD57	0	0	0	0	Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.	marker_mappings/marker_protein_gene.csv#CD57
-CD64	single_protein	allow	CD64	1	1	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD64
-CD66B	single_protein	allow	CD66B	21	21	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD66b
-CD8	unresolved	withhold	CD8	318	0	0	318	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#CD8
-CXCR3	single_protein	allow	CD183	0	8	8	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CXCR3
-CXCR5	single_protein	allow	CD185	0	2	2	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CXCR5
-DELTA	unresolved	withhold	DELTA	0	0	0	0	No PRO identity recorded; possible source artifact or unresolved marker requires clarification.	marker_mappings/marker_protein_gene.csv#delta
-DELTA1	unresolved	withhold	DELTA1	0	0	0	0	No PRO identity recorded; possible source artifact or unresolved marker requires clarification.	marker_mappings/marker_protein_gene.csv#delta1
-FCER1A	single_protein	allow	FCER1A	0	16	16	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#FceR1a
-GAMMA	unresolved	withhold	GAMMA	0	0	0	0	No PRO identity recorded; possible source artifact or unresolved marker requires clarification.	marker_mappings/marker_protein_gene.csv#gamma
-HLA-DR	complex	withhold	HLA-DR	0	0	0	0	Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.	marker_mappings/marker_protein_gene.csv#HLA-DR
-IFNG	single_protein	allow	IFNG	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IFNg
-IGA	protein_family	withhold	IGA	0	0	0	0	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgA
-IGD	protein_family	withhold	IGD	0	0	0	0	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgD
-IGE	protein_family	withhold	IGE	0	0	0	0	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgE
-IGG	protein_family	withhold	IGG	0	0	0	0	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgG
-IGM	protein_family	withhold	IGM	0	0	0	0	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgM
-IL-13	single_protein	allow	IL-13	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-13
-IL-17A	single_protein	allow	IL-17A	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-17a
-IL-4	single_protein	allow	IL-4	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-4
-IL-5	single_protein	allow	IL-5	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-5
-IL-9	single_protein	allow	IL-9	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-9
-MR1	unresolved	withhold	MR1	0	0	0	0	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#MR1
-TCR	protein_family	withhold	TCR	0	0	0	0	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#TCR
-TCRAB	complex	withhold	TCRAB	0	0	0	0	Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.	marker_mappings/marker_protein_gene.csv#TCRab
-TCRGD	complex	withhold	TCRGD	0	0	0	0	Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.	marker_mappings/marker_protein_gene.csv#TCRgd
-TCRVA24	single_protein	allow	TCRVA24	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVa24
-TCRVA24-JA18	complex	withhold	TCRVA24-JA18	0	0	0	0	Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.	marker_mappings/marker_protein_gene.csv#TCRVa24-Ja18
-TCRVA7.2	single_protein	allow	TCRVA7.2	0	1	1	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVa7.2
-TCRVB11	single_protein	allow	TCRVB11	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVb11
-TCRVD2	single_protein	allow	TCRVD2	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVd2
-TCRVG9	single_protein	allow	TCRVG9	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVg9
-TETRAMER	reagent_gate	withhold	TETRAMER	0	0	0	0	Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.	marker_mappings/marker_protein_gene.csv#Tetramer
-V	unresolved	withhold	V	0	0	0	0	No PRO identity recorded; possible source artifact or unresolved marker requires clarification.	marker_mappings/marker_protein_gene.csv#V
-VB11	single_protein	allow	TCRVB11	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#VB11
-VD1	single_protein	allow	VD1	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#Vd1
+marker_token	representation	protein_resolution	canonical	legacy_axiom_rows	enhanced_axiom_rows	gained	lost	rationale	source_ref	failure_category	specific_rationale	evidence_level	next_action
+CCR4	single_protein	allow	CCR4	0	4	4	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CCR4				
+CCR6	single_protein	allow	CCR6	0	8	8	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CCR6				
+CD10	single_protein	allow	CD10	20	20	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD10				
+CD117	single_protein	allow	CD117	49	44	0	5	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD117				
+CD11C	single_protein	allow	CD11C	85	85	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD11c				
+CD123	single_protein	allow	CD123	31	31	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD123				
+CD127	single_protein	allow	CD127	58	53	0	5	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD127				
+CD138	single_protein	allow	CD138	52	52	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD138				
+CD14	single_protein	allow	CD14	108	108	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD14				
+CD141	single_protein	allow	CD141	1	1	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD141				
+CD15	unresolved	withhold	CD15	15	0	0	15	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#CD15	carbohydrate_epitope	CD15 antibodies detect the Lewis X (SSEA-1) carbohydrate, not a protein. The registry PRO ID (PR:000001456) is FUT4, the fucosyltransferase that makes it; PRO lists CD15 as an exact synonym of FUT4 and CL uses FUT4 in 8 asserted CD15 axioms. Possible CHEBI representation: CHEBI:62287 (Gal-(1->4)-[Fuc-(1->3)]-GlcNAc), structural match to be confirmed.	ontology_checked	leave withheld; propose CL/PRO issue on CD15 = FUT4
+CD16	unresolved	withhold	CD16	29	0	0	29	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#CD16	multi_gene_product	Human CD16 is two genes: FCGR3A (CD16a, PR:000001484) and FCGR3B (CD16b, PR:000001485). The registry and CL use PR:000001483, which PRO defines as the product of the mouse Fcgr3 gene or a 1:1 ortholog, so it does not clearly cover either human gene. OMIP-069 uses clone 3G8, which binds both CD16a and CD16b (PMC12606087). CD16 is mostly used in the shared exclusion panel (CD15-|CD66b-) CD16-, which mirrors SOULCAP's CD16hi neutrophil definition; neutrophils carry CD16b, so CD16a alone would misrepresent exclusion gates.	ontology_checked	ask David (likely lacks CD16a and lacks CD16b for exclusion); propose CL issue on PR:000001483 for human cell types
+CD161	single_protein	allow	CD161	19	2	0	17	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD161				
+CD172A	single_protein	allow	CD172A	6	6	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD172a				
+CD183	single_protein	allow	CD183	8	8	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD183				
+CD185	single_protein	allow	CD185	2	2	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD185				
+CD19	single_protein	allow	CD19	335	335	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD19				
+CD193	single_protein	allow	CD193	16	16	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD193				
+CD194	single_protein	allow	CCR4	4	4	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD194				
+CD196	single_protein	allow	CCR6	8	8	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD196				
+CD198	single_protein	allow	CD198	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD198				
+CD1C	single_protein	allow	CD1C	1	1	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD1c				
+CD1D-A-GALCER	reagent_gate	withhold	CD1D-A-GALCER	0	0	0	0	Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.	marker_mappings/marker_protein_gene.csv#CD1d-a-GalCer	lipid_antigen_reagent	First half of CD1d-a-GalCer Tetramer+ (rows 60, 76-80, 108, 110-115): CD1d loaded with the lipid alpha-galactosylceramide, a reagent that stains iNKT TCRs. Not a protein marker on the cell.	source_traced	leave withheld; report spacing to SOULCAP
+CD20	single_protein	allow	CD20	284	284	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD20				
+CD21	single_protein	allow	CD21	11	11	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD21				
+CD24	single_protein	allow	CD24	38	38	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD24				
+CD25	single_protein	allow	CD25	41	40	0	1	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD25				
+CD27	single_protein	allow	CD27	49	49	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD27				
+CD294	single_protein	allow	CD294	1	1	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD294				
+CD3	unresolved	withhold	CD3	330	0	0	330	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#CD3	protein_complex	CD3 is a multi-chain complex (CD3 gamma, delta, epsilon, zeta). PRO has no general CD3 complex term: its only CD3 complex is the phosphorylated CD3 epsilon:gamma dimer (PR:000025781). Options are CD3 epsilon (PR:000001020, which CL uses in all 23 asserted CD3-negative axioms) or the family term PR:000001018 (CD3 delta/epsilon/gamma). CL encodes T-cell identity with GO TCR complexes (GO:0042101/GO:0042105/GO:0042106). OMIP-069 uses clone SK7. Blocks 71 cell types.	ontology_checked	ask David; decision needed: see docs/marker_resolution.md#decisions-for-david
+CD303	single_protein	allow	CD303	3	3	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD303				
+CD33	single_protein	allow	CD33	15	13	0	2	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD33				
+CD34	single_protein	allow	CD34	135	130	0	5	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD34				
+CD38	single_protein	allow	CD38	59	59	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD38				
+CD4	single_protein	allow	CD4	196	196	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD4				
+CD45	single_protein	allow	CD45	92	92	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD45				
+CD56	single_protein	allow	CD56	181	177	0	4	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD56				
+CD57	reagent_gate	withhold	CD57	0	0	0	0	Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.	marker_mappings/marker_protein_gene.csv#CD57	carbohydrate_epitope	CD57 antibodies (clone HNK-1 in OMIP-069) detect the HNK-1 sulfoglucuronyl carbohydrate, not a protein. B3GAT1 (PR:000001440) is the enzyme that makes it. Possible CHEBI representation: CHEBI:137065 (GlcA3S-(1->3)-Gal-(1->4)-GlcNAc), structural match to be confirmed.	ontology_checked	leave withheld
+CD64	single_protein	allow	CD64	1	1	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD64				
+CD66B	single_protein	allow	CD66B	21	21	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CD66b				
+CD8	unresolved	withhold	CD8	318	39	0	279	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#CD8	protein_complex	CD8 is expressed as a CD8 alpha-alpha homodimer or a CD8 alpha-beta heterodimer. PR:000025402 is specifically CD8 alpha-beta (exact synonym CD8alphabeta; components CD8 alpha + CD8 beta), so it excludes CD8aa+ gamma-delta T and NK cells. CD8 alpha (PR:000001084) covers both; CD8 beta is PR:000001085. CL uses PR:000001084, PR:000025402 and PR:000025403. OMIP-069 uses clone SK1.	ontology_checked	ask David; decision needed: see docs/marker_resolution.md#decisions-for-david
+CXCR3	single_protein	allow	CD183	0	8	8	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CXCR3				
+CXCR5	single_protein	allow	CD185	0	2	2	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#CXCR5				
+DELTA	unresolved	withhold	DELTA	0	0	0	0	No PRO identity recorded; possible source artifact or unresolved marker requires clarification.	marker_mappings/marker_protein_gene.csv#delta	source_syntax_artifact	From TCR V delta 1+ / TCR V delta 2- (rows 124-128), split at the spaces. Intended markers are TCR Vd1 and Vd2.	source_traced	report to SOULCAP (see reports/soulcap_feedback.tsv)
+DELTA1	unresolved	withhold	DELTA1	0	0	0	0	No PRO identity recorded; possible source artifact or unresolved marker requires clarification.	marker_mappings/marker_protein_gene.csv#delta1	source_syntax_artifact	From TCR V delta1- (Ideal phenotypic, rows 123-124). Intended marker is TCR Vd1.	source_traced	report to SOULCAP (see reports/soulcap_feedback.tsv)
+FCER1A	single_protein	allow	FCER1A	0	16	16	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#FceR1a				
+GAMMA	unresolved	withhold	GAMMA	0	0	0	0	No PRO identity recorded; possible source artifact or unresolved marker requires clarification.	marker_mappings/marker_protein_gene.csv#gamma	source_syntax_artifact	From TCR V gamma 9+ / TCR V gamma 9- (rows 124-128), split at the spaces. Intended marker is TCR Vg9.	source_traced	report to SOULCAP (see reports/soulcap_feedback.tsv)
+HLA-DR	complex	withhold	HLA-DR	0	0	0	0	Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.	marker_mappings/marker_protein_gene.csv#HLA-DR	protein_complex	HLA-DR is a heterodimer of the DR alpha chain (DRA) and one of several DR beta chains (DRB1/3/4/5). The registry uses DRA (PR:000002015), as do 6 asserted CL axioms; CL also uses the generic GO:0042613 (MHC class II protein complex) in 23 axioms, which is not DR-specific. OMIP-069 uses clone L243.	ontology_checked	ask David (DRA vs GO:0042613)
+IFNG	single_protein	allow	IFNG	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IFNg				
+IGA	protein_family	withhold	IGA	0	0	0	0	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgA	protein_family	Surface IgA is a two-gene family (IGHA1/IGHA2) assembled with light chains. CL models surface immunoglobulin with GO immunoglobulin complex terms; PRO has human IgA1/IgA2 B cell receptor complexes (PR:000050161, PR:000050162) and GO has GO:0071747 (IgA B cell receptor complex).	ontology_checked	use a GO immunoglobulin complex term as CL does (confirm with David)
+IGD	protein_family	withhold	IGD	0	0	0	0	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgD	protein_family	Surface IgD is the IgD immunoglobulin complex. CL uses GO:0071738 (IgD immunoglobulin complex) in 14 axioms (has/lacks plasma membrane part), e.g. on naive B cell. PRO also has PR:000050172 (IgD B cell receptor complex, human).	ontology_checked	use GO:0071738 as CL does (confirm with David)
+IGE	protein_family	withhold	IGE	0	0	0	0	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgE	protein_family	Surface IgE is an immunoglobulin complex. GO has GO:0071744 (IgE B cell receptor complex); CL uses GO:0071743 (IgE immunoglobulin complex, circulating) for secreted IgE. No human PRO IgE BCR complex found.	ontology_checked	use a GO immunoglobulin complex term (confirm with David)
+IGG	protein_family	withhold	IGG	0	0	0	0	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgG	protein_family	Surface IgG spans four subclass genes (IGHG1-4). CL uses GO:0071735 (IgG immunoglobulin complex); PRO has human IgG1-4 B cell receptor complexes (PR:000050313 to PR:000050316) and GO has GO:0071737 (IgG B cell receptor complex).	ontology_checked	use GO:0071735 as CL does (confirm with David)
+IGM	protein_family	withhold	IGM	0	0	0	0	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#IgM	protein_family	Surface IgM is the IgM immunoglobulin complex. CL uses GO:0071753 (IgM immunoglobulin complex) in 11 axioms, e.g. on naive B cell; GO also has GO:0071755 (IgM B cell receptor complex).	ontology_checked	use GO:0071753 as CL does (confirm with David)
+IL-13	single_protein	allow	IL-13	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-13				
+IL-17A	single_protein	allow	IL-17A	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-17a				
+IL-4	single_protein	allow	IL-4	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-4				
+IL-5	single_protein	allow	IL-5	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-5				
+IL-9	single_protein	allow	IL-9	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#IL-9				
+MR1	unresolved	withhold	MR1	0	0	0	0	Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.	marker_mappings/marker_protein_gene.csv#MR1	multimer_reagent	Every sheet use is MR1 Tetramer+ (rows 75-80, 108, 110-115): a tetramer of MR1 loaded with antigen that stains MAIT TCRs. It detects TCR specificity, not MR1 on the cell, so mapping it to MR1 protein (PR:Q95460) would be wrong. The token is split from MR1 Tetramer by the space.	source_traced	leave withheld; report spacing to SOULCAP
+TCR	protein_family	withhold	TCR	0	0	0	0	Registry notes document a non-single-protein or pan-marker representation.	marker_mappings/marker_protein_gene.csv#TCR	source_syntax_artifact	No sheet row uses TCR alone as a marker. The token comes from spaced names split by the tokenizer: TCR Vb11+, TCR VB11+, TCR V delta 1+ and TCR V gamma 9 (sheet rows 60, 76-80, 123-128). If a genuine pan-TCR marker were needed, CL uses GO:0042101 (T cell receptor complex).	source_traced	report to SOULCAP (see reports/soulcap_feedback.tsv)
+TCRAB	complex	withhold	TCRAB	0	0	0	0	Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.	marker_mappings/marker_protein_gene.csv#TCRab	protein_complex	Pan alpha-beta TCR antibodies recognise the assembled alpha-beta heterodimer. CL encodes this with GO:0042105 (alpha-beta T cell receptor complex), e.g. on CL:0000789 alpha-beta T cell. No PRO complex term found.	ontology_checked	use GO:0042105 as CL does (confirm with David)
+TCRGD	complex	withhold	TCRGD	0	0	0	0	Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.	marker_mappings/marker_protein_gene.csv#TCRgd	protein_complex	Pan gamma-delta TCR antibodies (clone B1.1 in OMIP-069) recognise the assembled gamma-delta heterodimer. CL encodes this with GO:0042106 (gamma-delta T cell receptor complex) on CL:0000798. No PRO complex term found.	ontology_checked	use GO:0042106 as CL does (confirm with David)
+TCRVA24	single_protein	allow	TCRVA24	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVa24				
+TCRVA24-JA18	complex	withhold	TCRVA24-JA18	0	0	0	0	Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.	marker_mappings/marker_protein_gene.csv#TCRVa24-Ja18	multi_gene_product	The invariant iNKT TCR alpha chain is a rearrangement of two gene segments, TRAV10 (V alpha 24) and TRAJ18. The registry maps only the V segment (PR:A0A0B4J240, TRAV10), which would also match non-invariant V alpha 24 TCRs.	registry_note_only	leave withheld
+TCRVA7.2	single_protein	allow	TCRVA7.2	0	1	1	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVa7.2				
+TCRVB11	single_protein	allow	TCRVB11	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVb11				
+TCRVD2	single_protein	allow	TCRVD2	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVd2				
+TCRVG9	single_protein	allow	TCRVG9	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#TCRVg9				
+TETRAMER	reagent_gate	withhold	TETRAMER	0	0	0	0	Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.	marker_mappings/marker_protein_gene.csv#Tetramer	source_syntax_artifact	Second half of the spaced names MR1 Tetramer+ and CD1d-a-GalCer Tetramer+ (rows 60, 75-80, 108, 110-115). Not a marker.	source_traced	report to SOULCAP (see reports/soulcap_feedback.tsv)
+V	unresolved	withhold	V	0	0	0	0	No PRO identity recorded; possible source artifact or unresolved marker requires clarification.	marker_mappings/marker_protein_gene.csv#V	source_syntax_artifact	From TCR V delta1- (Ideal phenotypic, rows 123-124), which parses without error but splits into TCR / V / delta1, and from TCR V delta 2+ style names (rows 124-128). Intended markers are TCR Vd1, Vd2 and Vg9 (written TCRVd2+, TCRVg9+ in row 123).	source_traced	report to SOULCAP (see reports/soulcap_feedback.tsv)
+VB11	single_protein	allow	TCRVB11	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#VB11				
+VD1	single_protein	allow	VD1	0	0	0	0	Retains the registry's single PRO representation; computational identity only, not biological sign-off.	marker_mappings/marker_protein_gene.csv#Vd1				
diff --git a/reports/matcher_evaluation_baseline.json b/reports/matcher_evaluation_baseline.json
deleted file mode 100644
index b99d684..0000000
--- a/reports/matcher_evaluation_baseline.json
+++ /dev/null
@@ -1,12326 +0,0 @@
-{
-  "schema_version": 1,
-  "generated_utc": "2026-09-10T19:23:45.791616+00:00",
-  "inputs": {
-    "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44",
-    "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8",
-    "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e",
-    "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c",
-    "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706"
-  },
-  "benchmark_path": "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\matcher_benchmark.tsv",
-  "matcher": {
-    "version": "0.1.0",
-    "source_hashes": {
-      "cl_match.py": "2844580a1d9131eaced2ac2b9f339263d9fb03d3f450471a62f9021bbc8023d0",
-      "phenotype.py": "6d3e7e59b884365fa48596fe1365b8630053b70a6259bb0e8f42413a55a9514a",
-      "marker_syntax.py": "e40620b1d804eec3c1f05251716092abd7f5a273e11ba91ce61a3345b1872ade",
-      "registry.py": "a225ca650e0278378566bf7134b3d8daa33dabee0c61c3d479d8affddf7a25fd",
-      "evaluation.py": "375c098a561da7a3a6aee21a852773ce9d5efa6bfb493dc7547aa3ff098054c9",
-      "audit.py": "86a7f3978446fe1122eec579b5a4c41ea3adf0086b5bcb642c195104e4125d4d"
-    }
-  },
-  "config": {
-    "ks": [
-      1,
-      3,
-      5
-    ],
-    "ranking": "production order, including disqualified candidates",
-    "ties": "primary metrics use production order; bounds report tie sensitivity",
-    "denominator": "all cohort cases, including unscorable profiles and absent targets"
-  },
-  "candidate_count": 826,
-  "cases": [
-    {
-      "case_id": "provisional/SOULCAP:SC000001/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000001",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000623"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": 6,
-      "rank_best": 6,
-      "rank_worst": 32,
-      "missing_targets": [],
-      "candidates": [
-        {
-          "cl_id": "CL:0002338",
-          "label": "CD56-positive, CD161-positive immature natural killer cell, human",
-          "score": 23,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD34-",
-            "CD3-",
-            "CD19-",
-            "CD56+ (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD45+",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-",
-            "CD33-/CD64- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "score": 19,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-",
-            "CD56+ (hi) (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-",
-            "CD33-/CD64- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000939",
-          "label": "CD16-positive, CD56-dim natural killer cell, human",
-          "score": 19,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-",
-            "CD56+ (dim) (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-",
-            "CD33-/CD64- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002343",
-          "label": "decidual natural killer cell, human",
-          "score": 19,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-",
-            "CD56+ (hi) (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-",
-            "CD33-/CD64- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001073",
-          "label": "CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human",
-          "score": 17,
-          "matched": [
-            "CD34-",
-            "CD3-",
-            "CD19-",
-            "CD56+ (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD45+",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-",
-            "CD33-/CD64- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        }
-      ],
-      "target_results": [
-        {
-          "cl_id": "CL:0000623",
-          "label": "natural killer cell",
-          "score": 15,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD56+/CD56:high (no axiom on any alt.)",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-",
-            "CD33-/CD64- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "rank": 6,
-          "rank_best": 6,
-          "rank_worst": 32
-        }
-      ],
-      "status": "below_top_5",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000002/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000002",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000938"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": 1,
-      "rank_best": 1,
-      "rank_worst": 2,
-      "missing_targets": [],
-      "candidates": [
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "score": 23,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-",
-            "CD56:high (hi)",
-            "CD16- (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD127-",
-            "CD57-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002343",
-          "label": "decidual natural killer cell, human",
-          "score": 23,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-",
-            "CD56:high (hi)",
-            "CD16- (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD127-",
-            "CD57-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002338",
-          "label": "CD56-positive, CD161-positive immature natural killer cell, human",
-          "score": 19,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD34-",
-            "CD3-",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD45+",
-            "CD56:high",
-            "CD127-",
-            "CD16-/CD16:low (no axiom on any alt.)",
-            "CD57-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000623",
-          "label": "natural killer cell",
-          "score": 15,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD56:high",
-            "CD127-",
-            "CD16-/CD16:low (no axiom on any alt.)",
-            "CD57-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000823",
-          "label": "immature natural killer cell",
-          "score": 15,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD56:high",
-            "CD127-",
-            "CD16-/CD16:low (no axiom on any alt.)",
-            "CD57-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false
-        }
-      ],
-      "target_results": [
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "score": 23,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-",
-            "CD56:high (hi)",
-            "CD16- (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD127-",
-            "CD57-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "rank": 1,
-          "rank_best": 1,
-          "rank_worst": 2
-        }
-      ],
-      "status": "hit_at_5",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000003/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000003",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000939"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": 1,
-      "rank_best": 1,
-      "rank_worst": 2,
-      "missing_targets": [],
-      "candidates": [
-        {
-          "cl_id": "CL:0000939",
-          "label": "CD16-positive, CD56-dim natural killer cell, human",
-          "score": 23,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-",
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-            "CD45+",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD15-/CD66B- (no axiom on any alt.)",
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-        },
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-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-"
-          ],
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-          "disqualified": false
-        }
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-            "CD45+",
-            "CD127-",
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-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD57-",
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-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-"
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-          "disqualified": false
-        },
-        {
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-          "disqualified": false
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-          "disqualified": false
-        },
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-            "CD56+",
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-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-"
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-          "disqualified": false
-        }
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-            "CD45+",
-            "CD127-",
-            "CD57-",
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-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD45+",
-            "CD56+",
-            "CD127-",
-            "CD16+",
-            "CD57+",
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-            "CD56+ (dim)",
-            "CD16+"
-          ],
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-            "CD45+",
-            "CD127-",
-            "CD57+",
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-            "CD127+",
-            "CD294-"
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-            "CD127+",
-            "CD294-"
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-            "CD127+",
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-            "CD294-"
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-        }
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-            "CD117+"
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-      "subject_id": "SOULCAP:SC000007",
-      "match_type": "Exact",
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-            "CD3-",
-            "CD19-",
-            "CD45+",
-            "CD3-",
-            "CD11C:not:high (dim) (1 of 2 alt.)"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD127+",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-"
-          ],
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-          "disqualified": false
-        },
-        {
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-            "CD3-",
-            "CD19-",
-            "CD45+",
-            "CD3-",
-            "CD11C:not:high (dim) (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD127+",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
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-            "CD3-",
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-            "CD45+",
-            "CD3-",
-            "CD11C:not:high (dim) (1 of 2 alt.)"
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-            "CD127+",
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-            "CD123-"
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-          "disqualified": false
-        },
-        {
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-            "CD19-",
-            "CD3-",
-            "CD123-"
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-            "CD127+",
-            "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
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-          "disqualified": false
-        },
-        {
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-          "label": "group 2 innate lymphoid cell, mouse",
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-            "CD3-",
-            "CD19-",
-            "CD3-",
-            "CD127+"
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-            "CD45+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false
-        }
-      ],
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-          "cl_id": "CL:0001065",
-          "label": "innate lymphoid cell",
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-            "CD19-",
-            "CD3-"
-          ],
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-            "CD34-",
-            "CD45+",
-            "CD127+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-"
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-            "CD3-",
-            "CD19-",
-            "CD56-"
-          ],
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-            "CD16-",
-            "CD45+",
-            "CD33:high/CD64+ (no axiom on any alt.)",
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-            "CD127-",
-            "CD172A-",
-            "FCER1A-"
-          ],
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-          "disqualified": false
-        },
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-            "CD19-",
-            "CD56-",
-            "CD127-"
-          ],
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-            "CD45+",
-            "CD33:high/CD64+ (no axiom on any alt.)",
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-            "CD172A-",
-            "FCER1A-"
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-        },
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-            "CD19-",
-            "CD56-"
-          ],
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-            "CD172A-",
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-        },
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-            "CD19-",
-            "CD56-"
-          ],
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-            "CD16-",
-            "CD45+",
-            "CD33:high/CD64+ (no axiom on any alt.)",
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-            "CD141+",
-            "CD127-",
-            "CD172A-",
-            "FCER1A-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        }
-      ],
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-            "CD56-"
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-            "CD16-",
-            "CD45+",
-            "CD33:high/CD64+ (no axiom on any alt.)",
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-            "CD1C-",
-            "CD127-",
-            "CD172A-",
-            "FCER1A-"
-          ],
-          "contradictions": [],
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-          "rank_worst": 2
-        }
-      ],
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-      "note": ""
-    },
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-      "subject_id": "SOULCAP:SC000013",
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-      "evidence_reference": "mappings/curated_mappings.tsv",
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-            "CD11C:high (hi)",
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-            "CD19-",
-            "CD56-"
-          ],
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-            "CD45+",
-            "CD33:high/CD64+ (no axiom on any alt.)",
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-            "CD1C+",
-            "CD141:low/CD141- (no axiom on any alt.)",
-            "CD127-",
-            "CD172A+",
-            "FCER1A:low/FCER1A- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
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-          "label": "CD1c-positive myeloid dendritic cell",
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-            "CD123:not:high (1 of 2 alt.)",
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-            "CD1C+",
-            "CD3-",
-            "CD19-",
-            "CD56-"
-          ],
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-            "CD16-",
-            "CD45+",
-            "CD33:high/CD64+ (no axiom on any alt.)",
-            "HLA-DR+",
-            "CD141:low/CD141- (no axiom on any alt.)",
-            "CD127-",
-            "CD172A+",
-            "FCER1A:low/FCER1A- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002000",
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-            "CD3-",
-            "CD19-",
-            "CD56-",
-            "CD127-"
-          ],
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-            "CD45+",
-            "CD33:high/CD64+ (no axiom on any alt.)",
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-            "CD1C+",
-            "CD141:low/CD141- (no axiom on any alt.)",
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-            "FCER1A:low/FCER1A- (no axiom on any alt.)"
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-        },
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-            "CD19-",
-            "CD56-"
-          ],
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-            "CD16-",
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-            "CD33:high/CD64+ (no axiom on any alt.)",
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-            "CD172A+",
-            "FCER1A:low/FCER1A- (no axiom on any alt.)"
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-          "disqualified": false
-        },
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-            "CD19-",
-            "CD56-"
-          ],
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-            "CD16-",
-            "CD45+",
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-            "CD1C+",
-            "CD141:low/CD141- (no axiom on any alt.)",
-            "CD127-",
-            "CD172A+",
-            "FCER1A:low/FCER1A- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        }
-      ],
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-          "label": "CD1c-positive myeloid dendritic cell",
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-            "CD19-",
-            "CD56-"
-          ],
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-            "CD16-",
-            "CD45+",
-            "CD33:high/CD64+ (no axiom on any alt.)",
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-            "CD141:low/CD141- (no axiom on any alt.)",
-            "CD127-",
-            "CD172A+",
-            "FCER1A:low/FCER1A- (no axiom on any alt.)"
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-      "note": ""
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-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000014",
-      "match_type": "Exact",
-      "targets": [
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-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
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-          "label": "CD11c-negative plasmacytoid dendritic cell",
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-            "CD45+",
-            "CD303+ (1 of 3 alt.)",
-            "CD56-",
-            "CD19-"
-          ],
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-            "CD127-",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD16-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
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-            "CD45+",
-            "CD303+ (1 of 3 alt.)",
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-            "CD19-"
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-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD16-"
-          ],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000996",
-          "label": "mature CD11c-negative plasmacytoid dendritic cell",
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-            "CD45+",
-            "CD303+ (1 of 3 alt.)",
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-            "CD19-"
-          ],
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-            "CD127-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD14-",
-            "CD16-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
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-          "label": "CD34-positive, CD38-positive eosinophil progenitor cell",
-          "score": 15,
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-            "CD45+",
-            "CD56-",
-            "CD19-",
-            "CD14-"
-          ],
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-            "CD193-/FCER1A-/CD303+ (no axiom on any alt.)",
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-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002029",
-          "label": "Fc-epsilon RIalpha-low mast cell progenitor",
-          "score": 15,
-          "matched": [
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-            "CD45+",
-            "CD56-",
-            "CD19-",
-            "CD14-"
-          ],
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-            "CD193-/FCER1A-/CD303+ (no axiom on any alt.)",
-            "CD127-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        }
-      ],
-      "target_results": [
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-          "cl_id": "CL:0001058",
-          "label": "plasmacytoid dendritic cell, human",
-          "score": 12,
-          "matched": [
-            "CD3-",
-            "CD56-",
-            "CD19-",
-            "CD14-"
-          ],
-          "gaps": [
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-            "CD33:low/CD33+/CD123:high (no axiom on any alt.)",
-            "CD193-/FCER1A-/CD303+ (no axiom on any alt.)",
-            "CD127-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
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-          "rank_worst": 42
-        }
-      ],
-      "status": "below_top_5",
-      "note": ""
-    },
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-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000015",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000043"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": 3,
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-      "rank_worst": 7,
-      "missing_targets": [],
-      "candidates": [
-        {
-          "cl_id": "CL:0000614",
-          "label": "basophilic myelocyte",
-          "score": 18,
-          "matched": [
-            "CD3-",
-            "CD33+ (1 of 2 alt.)",
-            "CD193+ (hi) (1 of 4 alt.)",
-            "CD56-",
-            "CD19-",
-            "CD16-"
-          ],
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-            "CD127-",
-            "CD14-",
-            "FCER1A+",
-            "HLA-DR-"
-          ],
-          "contradictions": [
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-          "hint_bonus": 1,
-          "disqualified": false
-        },
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-          "cl_id": "CL:0002008",
-          "label": "CD34-positive, CD38-positive eosinophil progenitor cell",
-          "score": 18,
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-            "CD45+",
-            "CD123+ (1 of 2 alt.)",
-            "CD56-",
-            "CD19-",
-            "CD14-"
-          ],
-          "gaps": [
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-            "CD127-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-",
-            "FCER1A+",
-            "HLA-DR-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000043",
-          "label": "mature basophil",
-          "score": 17,
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-            "CD123+ (hi) (1 of 2 alt.)",
-            "CD193+ (hi) (1 of 4 alt.)",
-            "CD56-",
-            "CD19-"
-          ],
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-            "CD127-",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD16-",
-            "FCER1A+",
-            "HLA-DR-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000612",
-          "label": "eosinophilic myelocyte",
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-            "CD33+ (1 of 2 alt.)",
-            "CD193+ (1 of 4 alt.)",
-            "CD56-",
-            "CD19-",
-            "CD16-"
-          ],
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-            "CD127-",
-            "CD14-",
-            "FCER1A+",
-            "HLA-DR-"
-          ],
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-          "disqualified": false
-        },
-        {
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-          "label": "basophil",
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-            "CD123+ (hi) (1 of 2 alt.)",
-            "CD193+ (hi) (1 of 4 alt.)",
-            "CD56-",
-            "CD19-"
-          ],
-          "gaps": [
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-            "CD127-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD14-",
-            "CD16-",
-            "FCER1A+",
-            "HLA-DR-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        }
-      ],
-      "target_results": [
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-          "cl_id": "CL:0000043",
-          "label": "mature basophil",
-          "score": 17,
-          "matched": [
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-            "CD123+ (hi) (1 of 2 alt.)",
-            "CD193+ (hi) (1 of 4 alt.)",
-            "CD56-",
-            "CD19-"
-          ],
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-            "CD127-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD14-",
-            "CD16-",
-            "FCER1A+",
-            "HLA-DR-"
-          ],
-          "contradictions": [],
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-          "rank_worst": 7
-        }
-      ],
-      "status": "hit_at_5",
-      "note": ""
-    },
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-      "case_id": "provisional/SOULCAP:SC000016/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000016",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000043"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
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-      "missing_targets": [],
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-          "cl_id": "CL:0000043",
-          "label": "mature basophil",
-          "score": 17,
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-            "CD193+ (hi)",
-            "CD123+ (hi)",
-            "CD56-",
-            "CD19-"
-          ],
-          "gaps": [
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-            "CD45+",
-            "CD127-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000767",
-          "label": "basophil",
-          "score": 17,
-          "matched": [
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-            "CD193+ (hi)",
-            "CD123+ (hi)",
-            "CD56-",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD45+",
-            "CD127-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000768",
-          "label": "immature basophil",
-          "score": 17,
-          "matched": [
-            "CD3-",
-            "CD193+ (hi)",
-            "CD123+ (hi)",
-            "CD56-",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD45+",
-            "CD127-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000770",
-          "label": "band form basophil",
-          "score": 17,
-          "matched": [
-            "CD3-",
-            "CD193+ (hi)",
-            "CD123+ (hi)",
-            "CD56-",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD45+",
-            "CD127-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000942",
-          "label": "thymic plasmacytoid dendritic cell",
-          "score": 16,
-          "matched": [
-            "CD3-",
-            "CD45+",
-            "CD123+",
-            "CD56-",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD193+",
-            "CD127-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        }
-      ],
-      "target_results": [
-        {
-          "cl_id": "CL:0000043",
-          "label": "mature basophil",
-          "score": 17,
-          "matched": [
-            "CD3-",
-            "CD193+ (hi)",
-            "CD123+ (hi)",
-            "CD56-",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD45+",
-            "CD127-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "rank": 1,
-          "rank_best": 1,
-          "rank_worst": 4
-        }
-      ],
-      "status": "hit_at_5",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000017/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000017",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000576"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
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-      "rank": null,
-      "rank_best": null,
-      "rank_worst": null,
-      "missing_targets": [
-        "CL:0000576"
-      ],
-      "candidates": [],
-      "target_results": [],
-      "status": "invalid_profile",
-      "note": "invalid expression in Required exclusion: unexpected ')' in group"
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000018/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000018",
-      "match_type": "Exact",
-      "targets": [
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-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
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-      "rank_worst": null,
-      "missing_targets": [],
-      "candidates": [],
-      "target_results": [],
-      "status": "invalid_profile",
-      "note": "invalid expression in Required exclusion: unexpected ')' in group"
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000019/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000019",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000875"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": null,
-      "rank_best": null,
-      "rank_worst": null,
-      "missing_targets": [],
-      "candidates": [],
-      "target_results": [],
-      "status": "invalid_profile",
-      "note": "invalid expression in Required exclusion: unexpected ')' in group"
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000020/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000020",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0002393"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": null,
-      "rank_best": null,
-      "rank_worst": null,
-      "missing_targets": [],
-      "candidates": [],
-      "target_results": [],
-      "status": "invalid_profile",
-      "note": "invalid expression in Required exclusion: unexpected ')' in group"
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000021/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000021",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000775"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
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-      "rank": 9,
-      "rank_best": 7,
-      "rank_worst": 16,
-      "missing_targets": [],
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-          "label": "neutrophilic metamyelocyte",
-          "score": 18,
-          "matched": [
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-            "CD56-",
-            "CD66B+ (1 of 2 alt.)",
-            "CD19-",
-            "CD33+ (1 of 2 alt.)"
-          ],
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-            "CD123-",
-            "CD45+",
-            "CD193-",
-            "CD16:high",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001021",
-          "label": "CD34-positive, CD38-positive common lymphoid progenitor",
-          "score": 18,
-          "matched": [
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-            "CD56-",
-            "CD14- (1 of 2 alt.)",
-            "CD45+",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD123-",
-            "CD15:high/CD66B+ (no axiom on any alt.)",
-            "CD193-",
-            "CD16:high",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD64-/CD33+ (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001057",
-          "label": "myeloid dendritic cell, human",
-          "score": 18,
-          "matched": [
-            "CD3-",
-            "CD56-",
-            "CD14- (1 of 2 alt.)",
-            "CD123-",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD45+",
-            "CD15:high/CD66B+ (no axiom on any alt.)",
-            "CD193-",
-            "CD16:high",
-            "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-            "CD64-/CD33+ (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002000",
-          "label": "Kit-positive erythroid progenitor cell",
-          "score": 18,
-          "matched": [
-            "CD3-",
-            "CD56-",
-            "CD14- (1 of 2 alt.)",
-            "CD123-",
-            "CD19-"
-          ],
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-            "CD15:high/CD66B+ (no axiom on any alt.)",
-            "CD193-",
-            "CD16:high",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD64-/CD33+ (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002029",
-          "label": "Fc-epsilon RIalpha-low mast cell progenitor",
-          "score": 18,
-          "matched": [
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-            "CD56-",
-            "CD14- (1 of 2 alt.)",
-            "CD45+",
-            "CD19-"
-          ],
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-            "CD123-",
-            "CD15:high/CD66B+ (no axiom on any alt.)",
-            "CD193-",
-            "CD16:high",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD64-/CD33+ (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        }
-      ],
-      "target_results": [
-        {
-          "cl_id": "CL:0000775",
-          "label": "neutrophil",
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-          "matched": [
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-            "CD56-",
-            "CD66B+ (1 of 2 alt.)",
-            "CD19-"
-          ],
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-            "CD123-",
-            "CD45+",
-            "CD193-",
-            "CD16:high",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD64-/CD33+ (no axiom on any alt.)"
-          ],
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-          "disqualified": false,
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-          "rank_best": 7,
-          "rank_worst": 16
-        }
-      ],
-      "status": "below_top_5",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000022/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000022",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000771"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
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-      "rank": 4,
-      "rank_best": 2,
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-        {
-          "cl_id": "CL:0000612",
-          "label": "eosinophilic myelocyte",
-          "score": 26,
-          "matched": [
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-            "CD56-",
-            "CD66B+ (1 of 2 alt.)",
-            "CD193+",
-            "CD16-",
-            "CD19-",
-            "CD33+ (1 of 2 alt.)"
-          ],
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-            "CD14:low/CD14- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000041",
-          "label": "mature eosinophil",
-          "score": 20,
-          "matched": [
-            "CD3-",
-            "CD56-",
-            "CD66B+ (1 of 2 alt.)",
-            "CD193+",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD14:low/CD14- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD16-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD64-/CD33+ (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000580",
-          "label": "neutrophilic myelocyte",
-          "score": 20,
-          "matched": [
-            "CD3-",
-            "CD56-",
-            "CD66B+ (1 of 2 alt.)",
-            "CD16-",
-            "CD19-",
-            "CD33+ (1 of 2 alt.)"
-          ],
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-            "CD14:low/CD14- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD193+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000771",
-          "label": "eosinophil",
-          "score": 20,
-          "matched": [
-            "CD3-",
-            "CD56-",
-            "CD66B+ (1 of 2 alt.)",
-            "CD193+",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD14:low/CD14- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD16-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD64-/CD33+ (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000772",
-          "label": "immature eosinophil",
-          "score": 20,
-          "matched": [
-            "CD3-",
-            "CD56-",
-            "CD66B+ (1 of 2 alt.)",
-            "CD193+",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD14:low/CD14- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD16-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD64-/CD33+ (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false
-        }
-      ],
-      "target_results": [
-        {
-          "cl_id": "CL:0000771",
-          "label": "eosinophil",
-          "score": 20,
-          "matched": [
-            "CD3-",
-            "CD56-",
-            "CD66B+ (1 of 2 alt.)",
-            "CD193+",
-            "CD19-"
-          ],
-          "gaps": [
-            "CD14:low/CD14- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD16-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD64-/CD33+ (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false,
-          "rank": 4,
-          "rank_best": 2,
-          "rank_worst": 7
-        }
-      ],
-      "status": "hit_at_5",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000023/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000023",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000236"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": null,
-      "rank_best": null,
-      "rank_worst": null,
-      "missing_targets": [
-        "CL:0000236"
-      ],
-      "candidates": [
-        {
-          "cl_id": "CL:0000819",
-          "label": "B-1 B cell",
-          "score": 15,
-          "matched": [
-            "CD3-",
-            "CD45+",
-            "CD20+ (1 of 2 alt.)",
-            "CD20+"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD56-",
-            "CD127-",
-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000820",
-          "label": "B-1a B cell",
-          "score": 15,
-          "matched": [
-            "CD3-",
-            "CD45+",
-            "CD20+ (1 of 2 alt.)",
-            "CD20+"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD56-",
-            "CD127-",
-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000821",
-          "label": "B-1b B cell",
-          "score": 15,
-          "matched": [
-            "CD3-",
-            "CD45+",
-            "CD20+ (1 of 2 alt.)",
-            "CD20+"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD56-",
-            "CD127-",
-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000843",
-          "label": "follicular B cell",
-          "score": 15,
-          "matched": [
-            "CD3-",
-            "CD45+",
-            "CD20+ (1 of 2 alt.)",
-            "CD20+"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD56-",
-            "CD127-",
-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000961",
-          "label": "Bm1 B cell",
-          "score": 15,
-          "matched": [
-            "CD3-",
-            "CD45+",
-            "CD20+ (1 of 2 alt.)",
-            "CD20+"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD56-",
-            "CD127-",
-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        }
-      ],
-      "target_results": [],
-      "status": "target_not_in_index",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000024/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000024",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000946"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": null,
-      "rank_best": null,
-      "rank_worst": null,
-      "missing_targets": [
-        "CL:0000946"
-      ],
-      "candidates": [
-        {
-          "cl_id": "CL:0000949",
-          "label": "IgD plasmablast",
-          "score": 18,
-          "matched": [
-            "CD3-",
-            "CD19+",
-            "CD27+ (hi) (1 of 2 alt.)",
-            "CD38:high (hi)",
-            "CD20- (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD56-",
-            "CD45+",
-            "CD127-",
-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000950",
-          "label": "IgE plasmablast",
-          "score": 18,
-          "matched": [
-            "CD3-",
-            "CD19+",
-            "CD27+ (hi) (1 of 2 alt.)",
-            "CD38:high (hi)",
-            "CD20- (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD56-",
-            "CD45+",
-            "CD127-",
-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000980",
-          "label": "plasmablast",
-          "score": 18,
-          "matched": [
-            "CD3-",
-            "CD19+",
-            "CD27+ (hi) (1 of 2 alt.)",
-            "CD38:high (hi)",
-            "CD20- (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD56-",
-            "CD45+",
-            "CD127-",
-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000982",
-          "label": "IgG plasmablast",
-          "score": 18,
-          "matched": [
-            "CD3-",
-            "CD19+",
-            "CD27+ (hi) (1 of 2 alt.)",
-            "CD38:high (hi)",
-            "CD20- (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD56-",
-            "CD45+",
-            "CD127-",
-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000983",
-          "label": "IgM plasmablast",
-          "score": 18,
-          "matched": [
-            "CD3-",
-            "CD19+",
-            "CD27+ (hi) (1 of 2 alt.)",
-            "CD38:high (hi)",
-            "CD20- (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD56-",
-            "CD45+",
-            "CD127-",
-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD123-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        }
-      ],
-      "target_results": [],
-      "status": "target_not_in_index",
-      "note": ""
-    },
-    {
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-      "cohort": "provisional",
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-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            "CD20+ (1 of 2 alt.)",
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-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD123-"
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-        },
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-            "CD20+ (1 of 2 alt.)",
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-            "CD38- (1 of 2 alt.)",
-            "CD20+"
-          ],
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-            "IGG-",
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-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD123-"
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-          "disqualified": false
-        },
-        {
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-            "CD20+ (1 of 2 alt.)",
-            "CD27+",
-            "CD38- (1 of 2 alt.)",
-            "CD20+"
-          ],
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-            "IGD-",
-            "IGM-",
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-            "IGG-",
-            "IGE-",
-            "CD127-",
-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD123-"
-          ],
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-          "disqualified": false
-        },
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-          "cl_id": "CL:0002120",
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-            "CD27+",
-            "CD38- (1 of 2 alt.)",
-            "CD20+"
-          ],
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-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-        },
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-            "CD27+",
-            "CD38- (1 of 2 alt.)",
-            "CD20+"
-          ],
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-            "CD56-",
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-            "IGM-",
-            "IGA+",
-            "IGG-",
-            "IGE-",
-            "CD127-",
-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD123-"
-          ],
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-          "disqualified": false
-        }
-      ],
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-          "cl_id": "CL:0000973",
-          "label": "IgA memory B cell",
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-            "CD20+ (1 of 2 alt.)",
-            "CD27+",
-            "CD20+"
-          ],
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-            "CD38:low/CD38- (no axiom on any alt.)",
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-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-          "rank_worst": 19
-        }
-      ],
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-      "note": ""
-    },
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-      ],
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-            "CD45+",
-            "CD20+ (1 of 2 alt.)",
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-            "CD38- (1 of 2 alt.)",
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-          ],
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-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            "CD27+",
-            "CD38- (1 of 2 alt.)",
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-          ],
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-            "IGA-",
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-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-        },
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-            "CD20+ (1 of 2 alt.)",
-            "CD27+",
-            "CD38- (1 of 2 alt.)",
-            "CD20+"
-          ],
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-            "IGM-",
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-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD123-"
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-        },
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-          "cl_id": "CL:0002120",
-          "label": "CD24-positive CD38-negative IgG-negative class switched memory B cell",
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-            "CD20+ (1 of 2 alt.)",
-            "CD27+",
-            "CD38- (1 of 2 alt.)",
-            "CD20+"
-          ],
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-            "IGM-",
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-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-        },
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-            "CD27+",
-            "CD38- (1 of 2 alt.)",
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-            "IGD-",
-            "IGM-",
-            "IGA-",
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-            "CD127-",
-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD123-"
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-          "disqualified": false
-        }
-      ],
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-            "CD20+ (1 of 2 alt.)",
-            "CD27+",
-            "CD20+"
-          ],
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-            "CD38:low/CD38- (no axiom on any alt.)",
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-            "IGM-",
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-      "note": ""
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-      "cohort": "provisional",
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-      "match_type": "Exact",
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-            "CD45+",
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-            "CD38- (1 of 2 alt.)",
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-            "CD38- (1 of 2 alt.)",
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-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD27+",
-            "CD38- (1 of 2 alt.)",
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-            "CD127-",
-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-          "disqualified": false
-        },
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-            "CD20+ (1 of 2 alt.)",
-            "CD27+",
-            "CD38- (1 of 2 alt.)",
-            "CD20+"
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-            "IGA-",
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-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-        },
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-            "CD20+ (1 of 2 alt.)",
-            "CD27+",
-            "CD38- (1 of 2 alt.)",
-            "CD20+"
-          ],
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-            "IGD-",
-            "IGM-",
-            "IGA-",
-            "IGG-",
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-            "CD127-",
-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD123-"
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-          "disqualified": false
-        }
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-            "CD20+ (1 of 2 alt.)",
-            "CD27+",
-            "CD20+"
-          ],
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-            "CD56-",
-            "CD45+",
-            "CD38:low/CD38- (no axiom on any alt.)",
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-            "IGM-",
-            "IGA-",
-            "IGG-",
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-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-          "rank_worst": 19
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-      ],
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-      "note": ""
-    },
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-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000045",
-      "match_type": "Exact",
-      "targets": [
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-      ],
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-            "CD11C:not:high (1 of 2 alt.)"
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-          "disqualified": false
-        },
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-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD45+",
-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-        },
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD45+",
-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-        },
-        {
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD45+",
-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-        },
-        {
-          "cl_id": "CL:0000786",
-          "label": "plasma cell",
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-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
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-          "disqualified": false
-        }
-      ],
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-      "note": ""
-    },
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-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000046",
-      "match_type": "Broad",
-      "targets": [
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-      ],
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-            "CD11C:not:high (1 of 2 alt.)"
-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD3+",
-            "CD56+",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-          "disqualified": false
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD3+",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-          "disqualified": false
-        },
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-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-      "note": ""
-    },
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-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000047",
-      "match_type": "Broad",
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-            "CD8+ (dim)"
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-            "CD3+",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD3+",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-          "disqualified": false
-        },
-        {
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-            "CD8+ (dim)"
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD3+",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-        {
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-            "CD8+"
-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD45+",
-            "CD3+",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-          "disqualified": false
-        },
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-            "CD8+"
-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD45+",
-            "CD3+",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD45+",
-            "CD3+",
-            "CD4+",
-            "CD8+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-      "note": ""
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-      "subject_id": "SOULCAP:SC000048",
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-            "CD4-",
-            "CD8+"
-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD4-",
-            "CD8+"
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD56+",
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-            "CD4-",
-            "CD8+"
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD8+"
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-            "CD8+"
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD45+",
-            "CD3+",
-            "CD4-",
-            "CD8+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-      "cohort": "provisional",
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-      "match_type": "Broad",
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-            "CD11C:not:high (1 of 2 alt.)"
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "TCRAB+/TCRGD- (no axiom on any alt.)",
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-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "TCRAB+/TCRGD- (no axiom on any alt.)",
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "TCRAB+/TCRGD- (no axiom on any alt.)",
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-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD4+",
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "TCRAB+/TCRGD- (no axiom on any alt.)",
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-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD4+",
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
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-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-        },
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-            "CD4+",
-            "CD8-"
-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-        },
-        {
-          "cl_id": "CL:0001204",
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-            "CD4+",
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
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-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002677",
-          "label": "naive regulatory T cell",
-          "score": 13,
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-            "CD4+",
-            "CD8-"
-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        }
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-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD4+",
-            "CD8-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-          "rank_worst": 70
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-      ],
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-      "note": ""
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-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000051",
-      "match_type": "Broad",
-      "targets": [
-        "CL:4052055"
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-      "evidence_reference": "mappings/curated_mappings.tsv",
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-          "cl_id": "CL:0000900",
-          "label": "naive thymus-derived CD8-positive, alpha-beta T cell",
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-            "CD45+",
-            "CD4-",
-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001050",
-          "label": "effector CD8-positive, alpha-beta T cell",
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-          "matched": [
-            "CD45+",
-            "CD4-",
-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001203",
-          "label": "CD8-positive, alpha-beta memory T cell, CD45RO-positive",
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-          "matched": [
-            "CD45+",
-            "CD4-",
-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000625",
-          "label": "CD8-positive, alpha-beta T cell",
-          "score": 9,
-          "matched": [
-            "CD4-",
-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000794",
-          "label": "CD8-positive, alpha-beta cytotoxic T cell",
-          "score": 9,
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-            "CD4-",
-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        }
-      ],
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-        {
-          "cl_id": "CL:4052055",
-          "label": "mature NK T cell, human",
-          "score": 5,
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-            "CD56+"
-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD4-",
-            "CD8+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-          "rank_worst": 63
-        }
-      ],
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-      "note": ""
-    },
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-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000052",
-      "match_type": "Broad",
-      "targets": [
-        "CL:4052055"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
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-      "rank_worst": 42,
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-        {
-          "cl_id": "CL:0002039",
-          "label": "immature NK T cell stage I, mouse",
-          "score": 9,
-          "matched": [
-            "CD4+ (dim)",
-            "CD8+ (dim)"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000809",
-          "label": "double-positive, alpha-beta thymocyte",
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-          "matched": [
-            "CD4+",
-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002427",
-          "label": "resting double-positive thymocyte",
-          "score": 8,
-          "matched": [
-            "CD4+",
-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002428",
-          "label": "double-positive blast",
-          "score": 8,
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-            "CD4+",
-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002429",
-          "label": "CD69-positive double-positive thymocyte",
-          "score": 8,
-          "matched": [
-            "CD4+",
-            "CD8+"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        }
-      ],
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-        {
-          "cl_id": "CL:4052055",
-          "label": "mature NK T cell, human",
-          "score": 5,
-          "matched": [
-            "CD56+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD4+",
-            "CD8+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
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-          "rank_worst": 42
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-      ],
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-      "note": ""
-    },
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-      "case_id": "provisional/SOULCAP:SC000053/Broad",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000053",
-      "match_type": "Broad",
-      "targets": [
-        "CL:4052055"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
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-      "rank_worst": 54,
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-          "cl_id": "CL:0000803",
-          "label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell",
-          "score": 10,
-          "matched": [
-            "CD4-",
-            "CD8-"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000924",
-          "label": "CD4-negative, CD8-negative type I NK T cell",
-          "score": 10,
-          "matched": [
-            "CD4-",
-            "CD8-"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000928",
-          "label": "activated CD4-negative, CD8-negative type I NK T cell",
-          "score": 10,
-          "matched": [
-            "CD4-",
-            "CD8-"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000929",
-          "label": "CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma",
-          "score": 10,
-          "matched": [
-            "CD4-",
-            "CD8-"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000930",
-          "label": "CD4-negative, CD8-negative type I NK T cell secreting interleukin-4",
-          "score": 10,
-          "matched": [
-            "CD4-",
-            "CD8-"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false
-        }
-      ],
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-          "cl_id": "CL:4052055",
-          "label": "mature NK T cell, human",
-          "score": 5,
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-            "CD56+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD4-",
-            "CD8-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
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-          "rank_worst": 54
-        }
-      ],
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-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000054/Broad",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000054",
-      "match_type": "Broad",
-      "targets": [
-        "CL:4052055"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
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-        {
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-          "label": "Gr1-high myeloid suppressor cell",
-          "score": 7,
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-            "CD45+",
-            "CD11C:not:high (1 of 2 alt.)"
-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000097",
-          "label": "mast cell",
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-            "CD123-"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000484",
-          "label": "connective tissue type mast cell",
-          "score": 5,
-          "matched": [
-            "CD123-"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000485",
-          "label": "mucosal type mast cell",
-          "score": 5,
-          "matched": [
-            "CD123-"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
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-          "disqualified": false
-        },
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-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        }
-      ],
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-          "rank_worst": 34
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-      ],
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-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000055",
-      "match_type": "Broad",
-      "targets": [
-        "CL:4052055"
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-      "evidence_reference": "mappings/curated_mappings.tsv",
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-            "CD4+",
-            "CD8-"
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001044",
-          "label": "effector CD4-positive, alpha-beta T cell",
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-            "CD45+",
-            "CD4+",
-            "CD8-"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001046",
-          "label": "memory CCR4-positive regulatory T cell",
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-          "matched": [
-            "CD45+",
-            "CD4+",
-            "CD8-"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001204",
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-            "CD45+",
-            "CD4+",
-            "CD8-"
-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002677",
-          "label": "naive regulatory T cell",
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-            "CD4+",
-            "CD8-"
-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        }
-      ],
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-            "CD56+"
-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD4+",
-            "CD8-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-          "rank_worst": 70
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-      ],
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-      "note": ""
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-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000056",
-      "match_type": "Broad",
-      "targets": [
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-      "evidence_reference": "mappings/curated_mappings.tsv",
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-          "label": "naive thymus-derived CD8-positive, alpha-beta T cell",
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-            "CD45+",
-            "CD4-",
-            "CD8+"
-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001050",
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-            "CD4-",
-            "CD8+"
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-          "disqualified": false
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-        {
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-            "CD45+",
-            "CD4-",
-            "CD8+"
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000625",
-          "label": "CD8-positive, alpha-beta T cell",
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-            "CD8+"
-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000794",
-          "label": "CD8-positive, alpha-beta cytotoxic T cell",
-          "score": 9,
-          "matched": [
-            "CD4-",
-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        }
-      ],
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-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD4-",
-            "CD8+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-          "rank_worst": 63
-        }
-      ],
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-      "note": ""
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-    {
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-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000057",
-      "match_type": "Broad",
-      "targets": [
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-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
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-          "label": "immature NK T cell stage I, mouse",
-          "score": 9,
-          "matched": [
-            "CD4+ (dim)",
-            "CD8+ (dim)"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000809",
-          "label": "double-positive, alpha-beta thymocyte",
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-          "matched": [
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-            "CD8+"
-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002427",
-          "label": "resting double-positive thymocyte",
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-          "matched": [
-            "CD4+",
-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002428",
-          "label": "double-positive blast",
-          "score": 8,
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-            "CD4+",
-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002429",
-          "label": "CD69-positive double-positive thymocyte",
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-            "CD4+",
-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        }
-      ],
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-            "CD56+"
-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD4+",
-            "CD8+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-      ],
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-      "note": ""
-    },
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-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000058",
-      "match_type": "Broad",
-      "targets": [
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-      "evidence_reference": "mappings/curated_mappings.tsv",
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-          "label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell",
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-            "CD4-",
-            "CD8-"
-          ],
-          "gaps": [
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000924",
-          "label": "CD4-negative, CD8-negative type I NK T cell",
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-          "matched": [
-            "CD4-",
-            "CD8-"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000928",
-          "label": "activated CD4-negative, CD8-negative type I NK T cell",
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-          "matched": [
-            "CD4-",
-            "CD8-"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000929",
-          "label": "CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma",
-          "score": 11,
-          "matched": [
-            "CD4-",
-            "CD8-"
-          ],
-          "gaps": [
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "CD56+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false
-        },
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-          "label": "CD4-negative, CD8-negative type I NK T cell secreting interleukin-4",
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-            "CD8-"
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
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-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        }
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-          "cl_id": "CL:4052055",
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-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
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-            "CD8-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-          "rank_worst": 54
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-      "note": ""
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-      "cohort": "provisional",
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-          "contradictions": [],
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-          "disqualified": false
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-          "disqualified": false
-        },
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-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        }
-      ],
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-      "status": "target_not_in_index",
-      "note": ""
-    },
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-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000061",
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-      "evidence_reference": "mappings/curated_mappings.tsv",
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-          "label": "Gr1-high myeloid suppressor cell",
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-            "CD11C:not:high (1 of 2 alt.)"
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
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-          "disqualified": false
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-          "disqualified": false
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-          "label": "mucosal type mast cell",
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-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
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-          "disqualified": false
-        },
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-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        }
-      ],
-      "target_results": [],
-      "status": "target_not_in_index",
-      "note": ""
-    },
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-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000062",
-      "match_type": "Broad",
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-            "CD4+",
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-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            "CD4+",
-            "CD8-"
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001046",
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-            "CD45+",
-            "CD4+",
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-        },
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-            "CD4+",
-            "CD8-"
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            "CD4+",
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-          "rank_worst": 36
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-      "note": ""
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-            "CD4-",
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-            "CD4-",
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-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000794",
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-            "CD4-",
-            "CD8+"
-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
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-          "disqualified": false
-        }
-      ],
-      "target_results": [
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-          "cl_id": "CL:0000625",
-          "label": "CD8-positive, alpha-beta T cell",
-          "score": 9,
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-            "CD8+"
-          ],
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-      ],
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-      "note": ""
-    },
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-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000064",
-      "match_type": "Broad",
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-            "CD8+ (dim)"
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-        },
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-          "cl_id": "CL:0000809",
-          "label": "double-positive, alpha-beta thymocyte",
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-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002427",
-          "label": "resting double-positive thymocyte",
-          "score": 8,
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-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD45+",
-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002428",
-          "label": "double-positive blast",
-          "score": 8,
-          "matched": [
-            "CD4+",
-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002429",
-          "label": "CD69-positive double-positive thymocyte",
-          "score": 8,
-          "matched": [
-            "CD4+",
-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        }
-      ],
-      "target_results": [],
-      "status": "target_not_in_index",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000065/Broad",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000065",
-      "match_type": "Broad",
-      "targets": [
-        "CL:0000084"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
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-      "rank_worst": null,
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-      ],
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-          "cl_id": "CL:0000803",
-          "label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell",
-          "score": 11,
-          "matched": [
-            "CD4-",
-            "CD8-"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000924",
-          "label": "CD4-negative, CD8-negative type I NK T cell",
-          "score": 11,
-          "matched": [
-            "CD4-",
-            "CD8-"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000928",
-          "label": "activated CD4-negative, CD8-negative type I NK T cell",
-          "score": 11,
-          "matched": [
-            "CD4-",
-            "CD8-"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000929",
-          "label": "CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma",
-          "score": 11,
-          "matched": [
-            "CD4-",
-            "CD8-"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000930",
-          "label": "CD4-negative, CD8-negative type I NK T cell secreting interleukin-4",
-          "score": 11,
-          "matched": [
-            "CD4-",
-            "CD8-"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false
-        }
-      ],
-      "target_results": [],
-      "status": "target_not_in_index",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000066/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000066",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000624"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
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-      "rank": 9,
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-      "rank_worst": 36,
-      "missing_targets": [],
-      "candidates": [
-        {
-          "cl_id": "CL:0000895",
-          "label": "naive thymus-derived CD4-positive, alpha-beta T cell",
-          "score": 13,
-          "matched": [
-            "CD45+",
-            "CD4+",
-            "CD8-"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001044",
-          "label": "effector CD4-positive, alpha-beta T cell",
-          "score": 13,
-          "matched": [
-            "CD45+",
-            "CD4+",
-            "CD8-"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001046",
-          "label": "memory CCR4-positive regulatory T cell",
-          "score": 13,
-          "matched": [
-            "CD45+",
-            "CD4+",
-            "CD8-"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001204",
-          "label": "CD4-positive, alpha-beta memory T cell, CD45RO-positive",
-          "score": 13,
-          "matched": [
-            "CD45+",
-            "CD4+",
-            "CD8-"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002677",
-          "label": "naive regulatory T cell",
-          "score": 13,
-          "matched": [
-            "CD45+",
-            "CD4+",
-            "CD8-"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        }
-      ],
-      "target_results": [
-        {
-          "cl_id": "CL:0000624",
-          "label": "CD4-positive, alpha-beta T cell",
-          "score": 9,
-          "matched": [
-            "CD4+",
-            "CD8-"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "rank": 9,
-          "rank_best": 6,
-          "rank_worst": 36
-        }
-      ],
-      "status": "below_top_5",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000067/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000067",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000625"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
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-      "rank": 4,
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-      "rank_worst": 27,
-      "missing_targets": [],
-      "candidates": [
-        {
-          "cl_id": "CL:0000900",
-          "label": "naive thymus-derived CD8-positive, alpha-beta T cell",
-          "score": 13,
-          "matched": [
-            "CD45+",
-            "CD4-",
-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001050",
-          "label": "effector CD8-positive, alpha-beta T cell",
-          "score": 13,
-          "matched": [
-            "CD45+",
-            "CD4-",
-            "CD8+"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001203",
-          "label": "CD8-positive, alpha-beta memory T cell, CD45RO-positive",
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-          "matched": [
-            "CD45+",
-            "CD4-",
-            "CD8+"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000625",
-          "label": "CD8-positive, alpha-beta T cell",
-          "score": 9,
-          "matched": [
-            "CD4-",
-            "CD8+"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000794",
-          "label": "CD8-positive, alpha-beta cytotoxic T cell",
-          "score": 9,
-          "matched": [
-            "CD4-",
-            "CD8+"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        }
-      ],
-      "target_results": [
-        {
-          "cl_id": "CL:0000625",
-          "label": "CD8-positive, alpha-beta T cell",
-          "score": 9,
-          "matched": [
-            "CD4-",
-            "CD8+"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
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-          "rank": 4,
-          "rank_best": 4,
-          "rank_worst": 27
-        }
-      ],
-      "status": "hit_at_5",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000068/Broad",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000068",
-      "match_type": "Broad",
-      "targets": [
-        "CL:0000789"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
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-      "missing_targets": [
-        "CL:0000789"
-      ],
-      "candidates": [
-        {
-          "cl_id": "CL:0002039",
-          "label": "immature NK T cell stage I, mouse",
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-            "CD4+ (dim)",
-            "CD8+ (dim)"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
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-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000809",
-          "label": "double-positive, alpha-beta thymocyte",
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-          "matched": [
-            "CD4+",
-            "CD8+"
-          ],
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002427",
-          "label": "resting double-positive thymocyte",
-          "score": 8,
-          "matched": [
-            "CD4+",
-            "CD8+"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002428",
-          "label": "double-positive blast",
-          "score": 8,
-          "matched": [
-            "CD4+",
-            "CD8+"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 0,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002429",
-          "label": "CD69-positive double-positive thymocyte",
-          "score": 8,
-          "matched": [
-            "CD4+",
-            "CD8+"
-          ],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB+/TCRGD- (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-      "note": ""
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-            "CD4+",
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-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
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-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
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-            "CD8+ (dim)"
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-      "note": ""
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-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            "CD8-"
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-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-          "disqualified": false
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD15-/CD66B- (no axiom on any alt.)",
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-      "note": ""
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-      "cohort": "provisional",
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-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        }
-      ],
-      "target_results": [
-        {
-          "cl_id": "CL:0000900",
-          "label": "naive thymus-derived CD8-positive, alpha-beta T cell",
-          "score": 2,
-          "matched": [],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false,
-          "rank": 253,
-          "rank_best": 242,
-          "rank_worst": 258
-        }
-      ],
-      "status": "below_top_5",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000096/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000096",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000905"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": 238,
-      "rank_best": 238,
-      "rank_worst": 247,
-      "missing_targets": [],
-      "candidates": [
-        {
-          "cl_id": "CL:0001057",
-          "label": "myeloid dendritic cell, human",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002000",
-          "label": "Kit-positive erythroid progenitor cell",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001024",
-          "label": "CD34-positive, CD38-negative hematopoietic stem cell",
-          "score": 12,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002343",
-          "label": "decidual natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        }
-      ],
-      "target_results": [
-        {
-          "cl_id": "CL:0000905",
-          "label": "effector memory CD4-positive, alpha-beta T cell",
-          "score": 3,
-          "matched": [],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "rank": 238,
-          "rank_best": 238,
-          "rank_worst": 247
-        }
-      ],
-      "status": "below_top_5",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000099/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000099",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000913"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": 239,
-      "rank_best": 238,
-      "rank_worst": 247,
-      "missing_targets": [],
-      "candidates": [
-        {
-          "cl_id": "CL:0001057",
-          "label": "myeloid dendritic cell, human",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002000",
-          "label": "Kit-positive erythroid progenitor cell",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001024",
-          "label": "CD34-positive, CD38-negative hematopoietic stem cell",
-          "score": 12,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002343",
-          "label": "decidual natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        }
-      ],
-      "target_results": [
-        {
-          "cl_id": "CL:0000913",
-          "label": "effector memory CD8-positive, alpha-beta T cell",
-          "score": 3,
-          "matched": [],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "rank": 239,
-          "rank_best": 238,
-          "rank_worst": 247
-        }
-      ],
-      "status": "below_top_5",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000103/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000103",
-      "match_type": "Exact",
-      "targets": [
-        "CL:4030002"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": null,
-      "rank_best": null,
-      "rank_worst": null,
-      "missing_targets": [
-        "CL:4030002"
-      ],
-      "candidates": [
-        {
-          "cl_id": "CL:0001057",
-          "label": "myeloid dendritic cell, human",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002000",
-          "label": "Kit-positive erythroid progenitor cell",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0001024",
-          "label": "CD34-positive, CD38-negative hematopoietic stem cell",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        },
-        {
-          "cl_id": "CL:0002343",
-          "label": "decidual natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false
-        }
-      ],
-      "target_results": [],
-      "status": "target_not_in_index",
-      "note": ""
-    }
-  ],
-  "metrics": {
-    "reviewed": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
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-      "hit_at_3": null,
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-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "provisional": {
-      "cases": 80,
-      "mrr": 0.1524095320342756,
-      "statuses": {
-        "below_top_5": 42,
-        "hit_at_5": 19,
-        "invalid_profile": 6,
-        "target_not_in_index": 13
-      },
-      "cases_with_missing_targets": 15,
-      "top1_disqualified": 0,
-      "hit_at_1": 0.0875,
-      "hit_at_1_optimistic": 0.125,
-      "hit_at_1_pessimistic": 0.0,
-      "hit_at_3": 0.15,
-      "hit_at_3_optimistic": 0.2,
-      "hit_at_3_pessimistic": 0.0875,
-      "hit_at_5": 0.2375,
-      "hit_at_5_optimistic": 0.275,
-      "hit_at_5_pessimistic": 0.1
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-  },
-  "by_relation": {
-    "reviewed/Exact": {
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-      "statuses": {},
-      "cases_with_missing_targets": 0,
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-      "hit_at_3": null,
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-    "reviewed/Broad": {
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-      "hit_at_3": 0.16,
-      "hit_at_3_optimistic": 0.18,
-      "hit_at_3_pessimistic": 0.08,
-      "hit_at_5": 0.24,
-      "hit_at_5_optimistic": 0.24,
-      "hit_at_5_pessimistic": 0.1
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-    "provisional/Broad": {
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-      "mrr": 0.1528000829961614,
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-        "target_not_in_index": 7
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-      "cases_with_missing_targets": 7,
-      "top1_disqualified": 0,
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-      "hit_at_3": 0.13333333333333333,
-      "hit_at_3_optimistic": 0.23333333333333334,
-      "hit_at_3_pessimistic": 0.1,
-      "hit_at_5": 0.23333333333333334,
-      "hit_at_5_optimistic": 0.3333333333333333,
-      "hit_at_5_pessimistic": 0.1
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-    "provisional/Narrow": {
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-      "hit_at_3": null,
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-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "provisional/Related": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    }
-  }
-}
diff --git a/reports/pro_marker_species_support.tsv b/reports/pro_marker_species_support.tsv
index 6af1f8b..f787118 100644
--- a/reports/pro_marker_species_support.tsv
+++ b/reports/pro_marker_species_support.tsv
@@ -1,10 +1,10 @@
 cl_id	cl_label	pr_id	pr_label	cd_synonym	species_support	evidence_source	citation	quote	source_ref
-CL:0000623	natural killer cell	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	human	m2_literature_report	Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360)	ILCs are identified as “lineage” (Lin) negative lymphocytes, lacking expression of surface markers more specifically expressed on T cells (CD3, CD5, TCR), B cells (CD19, CD20, BCR), myelomonocytic cells (CD14, CD15, CD36), and dendritic cells (DCs) (CD116, CD123, CD303).	reports/literature/nk_cell_markers.md
-CL:0000623	natural killer cell	PR:000001889	CD14 molecule	CD14 (label)	human	m2_literature_report	Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892)	there also exists a CD56− NK cell subpopulation, namely CD3−CD4−CD14−CD19−CD16+NKp46+ lymphocytes	reports/literature/nk_cell_markers.md
-CL:0000624	CD4-positive, alpha-beta T cell	PR:000025402	T cell receptor co-receptor CD8	CD8 (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8−/CD4+/CCR7+/CD45RA+	reports/literature/t_cell_markers.md
-CL:0000624	CD4-positive, alpha-beta T cell	PR:000001004	CD4 molecule	CD4 (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8−/CD4+/CCR7+/CD45RA+	reports/literature/t_cell_markers.md
-CL:0000625	CD8-positive, alpha-beta T cell	PR:000001004	CD4 molecule	CD4 (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8+/CD4−/CCR7+/CD45RA+	reports/literature/t_cell_markers.md
-CL:0000625	CD8-positive, alpha-beta T cell	PR:000025402	T cell receptor co-receptor CD8	CD8 (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8+/CD4−/CCR7+/CD45RA+	reports/literature/t_cell_markers.md
+CL:0000623	natural killer cell	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	human	m2_literature_report	Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360)	ILCs are identified as “lineage” (Lin) negative lymphocytes, lacking expression of surface markers more specifically expressed on T cells (CD3, CD5, TCR), B cells (CD19, CD20, BCR), myelomonocytic cells (CD14, CD15, CD36), and dendritic cells (DCs) (CD116, CD123, CD303).	archive/2026-09_literature_narratives/nk_cell_markers.md
+CL:0000623	natural killer cell	PR:000001889	CD14 molecule	CD14 (label)	human	m2_literature_report	Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892)	there also exists a CD56− NK cell subpopulation, namely CD3−CD4−CD14−CD19−CD16+NKp46+ lymphocytes	archive/2026-09_literature_narratives/nk_cell_markers.md
+CL:0000624	CD4-positive, alpha-beta T cell	PR:000025402	T cell receptor co-receptor CD8	CD8 (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8−/CD4+/CCR7+/CD45RA+	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000624	CD4-positive, alpha-beta T cell	PR:000001004	CD4 molecule	CD4 (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8−/CD4+/CCR7+/CD45RA+	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000625	CD8-positive, alpha-beta T cell	PR:000001004	CD4 molecule	CD4 (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8+/CD4−/CCR7+/CD45RA+	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000625	CD8-positive, alpha-beta T cell	PR:000025402	T cell receptor co-receptor CD8	CD8 (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8+/CD4−/CCR7+/CD45RA+	archive/2026-09_literature_narratives/t_cell_markers.md
 CL:0000771	eosinophil	PR:000001254	C-C chemokine receptor type 1	CD191 (exact)	insufficient_evidence	none			CD191/CCR1 not among the markers studied in PMID:38666394 (CCR3/CD193 is, but not CCR1); no other eosinophil-specific CD191 evidence found via targeted EuropePMC search.
 CL:0000771	eosinophil	PR:000001255	C-C chemokine receptor type 3	CD193 (exact)	human	europepmc_search	(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow	candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5Rα), HLA-DR, using 10 parameter flow cytometry	https://europepmc.org/article/MED/38666394
 CL:0000771	eosinophil	PR:000001307	CD44 molecule	CD44 (label); CDw44 (exact)	human	europepmc_search	(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow	candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5Rα), HLA-DR, using 10 parameter flow cytometry	https://europepmc.org/article/MED/38666394
@@ -12,18 +12,18 @@ CL:0000771	eosinophil	PR:000001343	CD69 molecule	CD69 (label)	human	europepmc_se
 CL:0000771	eosinophil	PR:000005178	CD9 molecule	CD9 (label)	human	europepmc_search	(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow	candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5Rα), HLA-DR, using 10 parameter flow cytometry	https://europepmc.org/article/MED/38666394
 CL:0000775	neutrophil	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)	human	europepmc_search	Su K et al. 2007 (PMID:17312177; DOI:10.4049/jimmunol.178.5.3272) -- FcγRIIb (CD32B) expression profiling in human circulating leukocytes	we found that FcgammaRIIb is expressed on the cell surface of circulating B lymphocytes, monocytes, neutrophils, myeloid dendritic cells (DCs), and at very low levels on plasmacytoid DCs from some donors	https://europepmc.org/article/MED/17312177
 CL:0000775	neutrophil	PR:000001879	leukosialin	CD43 (related)	insufficient_evidence	none			CD43 not found in any targeted EuropePMC search in a human-neutrophil-specific context ('CD43 leukosialin human neutrophil' returned unrelated papers).
-CL:0000786	plasma cell	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	human	m2_literature_report	Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)	as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired	reports/literature/b_cell_markers.md
-CL:0000786	plasma cell	PR:000001935	syndecan-1	CD138 (exact)	human	m2_literature_report	Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)	as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired	reports/literature/b_cell_markers.md
-CL:0000787	memory B cell	PR:000001935	syndecan-1	CD138 (exact)	human	m2_literature_report	Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122) -- describes the plasmablast/plasma-cell transition boundary, not memory B cells directly, but confirms CD138 as a human B-lineage differentiation marker	as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired	reports/literature/b_cell_markers.md
-CL:0000787	memory B cell	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	human	m2_literature_report	Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)	Mature B cells typically express both CD19 and CD20.	reports/literature/b_cell_markers.md
-CL:0000788	naive B cell	PR:000001963	CD27 molecule	CD27 (label); CD27L (exact)	human	m2_literature_report	Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)	"""**N**: CD19+ CD27− CD38− CD24− IgD+"" [naive B cell gating entry, Table 1]"	reports/literature/b_cell_markers.md
-CL:0000788	naive B cell	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	human	m2_literature_report	Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)	Mature B cells typically express both CD19 and CD20.	reports/literature/b_cell_markers.md
-CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell	PR:000001004	CD4 molecule	CD4 (label)	human	m2_literature_report	Kelm M et al. 2026 (PMID: 41727470; DOI: 10.3389/fimmu.2026.1739493; PMC: PMC12920462)	Purity of PHA- and Zole- expanded αβ and γδ T-cell cultures and MACS-isolated T-cell populations were assessed by flow cytometry using anti-CD3, CD4, CD8, γδ TCR, and αβ TCR monoclonal antibodies.	reports/literature/t_cell_markers.md
-CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell	PR:000001084	T-cell surface glycoprotein CD8 alpha chain	CD8 (label); CD8A (exact); CD8a (exact)	human	m2_literature_report	Kelm M et al. 2026 (PMID: 41727470; DOI: 10.3389/fimmu.2026.1739493; PMC: PMC12920462)	Purity of PHA- and Zole- expanded αβ and γδ T-cell cultures and MACS-isolated T-cell populations were assessed by flow cytometry using anti-CD3, CD4, CD8, γδ TCR, and αβ TCR monoclonal antibodies.	reports/literature/t_cell_markers.md
-CL:0000814	mature NK T cell	PR:000001874	KLRB1-like protein		human	m2_literature_report	Lal KG et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357)	we defined iNKT cell subsets by the co-expression of TCR Vα24 and Vβ11 among CD3+ cells, and further through their expression of CD4 and CD161	reports/literature/inkt_markers.md
-CL:0000818	transitional stage B cell	PR:000001408	ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1	CD38 (exact)	human	m2_literature_report	Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)	T1 (CD38+++CD24hiCD10++IgDlo/−), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)	reports/literature/b_cell_markers.md
-CL:0000818	transitional stage B cell	PR:000001932	signal transducer CD24	CD24 (label); CD24A (related)	human	m2_literature_report	Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)	T1 (CD38+++CD24hiCD10++IgDlo/−), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)	reports/literature/b_cell_markers.md
-CL:0000818	transitional stage B cell	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	insufficient_evidence	none			CD20 positivity on transitional B cells is not stated verbatim in reports/literature/b_cell_markers.md -- the report only confirms CD20 on 'mature B cells' generally (Griffin & Rothstein 2012), not the transitional stage specifically.
+CL:0000786	plasma cell	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	human	m2_literature_report	Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)	as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired	archive/2026-09_literature_narratives/b_cell_markers.md
+CL:0000786	plasma cell	PR:000001935	syndecan-1	CD138 (exact)	human	m2_literature_report	Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)	as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired	archive/2026-09_literature_narratives/b_cell_markers.md
+CL:0000787	memory B cell	PR:000001935	syndecan-1	CD138 (exact)	human	m2_literature_report	Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122) -- describes the plasmablast/plasma-cell transition boundary, not memory B cells directly, but confirms CD138 as a human B-lineage differentiation marker	as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired	archive/2026-09_literature_narratives/b_cell_markers.md
+CL:0000787	memory B cell	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	human	m2_literature_report	Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)	Mature B cells typically express both CD19 and CD20.	archive/2026-09_literature_narratives/b_cell_markers.md
+CL:0000788	naive B cell	PR:000001963	CD27 molecule	CD27 (label); CD27L (exact)	human	m2_literature_report	Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)	"""**N**: CD19+ CD27− CD38− CD24− IgD+"" [naive B cell gating entry, Table 1]"	archive/2026-09_literature_narratives/b_cell_markers.md
+CL:0000788	naive B cell	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	human	m2_literature_report	Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)	Mature B cells typically express both CD19 and CD20.	archive/2026-09_literature_narratives/b_cell_markers.md
+CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell	PR:000001004	CD4 molecule	CD4 (label)	human	m2_literature_report	Kelm M et al. 2026 (PMID: 41727470; DOI: 10.3389/fimmu.2026.1739493; PMC: PMC12920462)	Purity of PHA- and Zole- expanded αβ and γδ T-cell cultures and MACS-isolated T-cell populations were assessed by flow cytometry using anti-CD3, CD4, CD8, γδ TCR, and αβ TCR monoclonal antibodies.	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell	PR:000001084	T-cell surface glycoprotein CD8 alpha chain	CD8 (label); CD8A (exact); CD8a (exact)	human	m2_literature_report	Kelm M et al. 2026 (PMID: 41727470; DOI: 10.3389/fimmu.2026.1739493; PMC: PMC12920462)	Purity of PHA- and Zole- expanded αβ and γδ T-cell cultures and MACS-isolated T-cell populations were assessed by flow cytometry using anti-CD3, CD4, CD8, γδ TCR, and αβ TCR monoclonal antibodies.	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000814	mature NK T cell	PR:000001874	KLRB1-like protein		human	m2_literature_report	Lal KG et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357)	we defined iNKT cell subsets by the co-expression of TCR Vα24 and Vβ11 among CD3+ cells, and further through their expression of CD4 and CD161	archive/2026-09_literature_narratives/inkt_markers.md
+CL:0000818	transitional stage B cell	PR:000001408	ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1	CD38 (exact)	human	m2_literature_report	Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)	T1 (CD38+++CD24hiCD10++IgDlo/−), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)	archive/2026-09_literature_narratives/b_cell_markers.md
+CL:0000818	transitional stage B cell	PR:000001932	signal transducer CD24	CD24 (label); CD24A (related)	human	m2_literature_report	Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)	T1 (CD38+++CD24hiCD10++IgDlo/−), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)	archive/2026-09_literature_narratives/b_cell_markers.md
+CL:0000818	transitional stage B cell	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	insufficient_evidence	none			CD20 positivity on transitional B cells is not stated verbatim in archive/2026-09_literature_narratives/b_cell_markers.md -- the report only confirms CD20 on 'mature B cells' generally (Griffin & Rothstein 2012), not the transitional stage specifically.
 CL:0000860	classical monocyte	PR:000001199	C-C chemokine receptor type 2	CD192 (exact)	insufficient_evidence	none			No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.
 CL:0000860	classical monocyte	PR:000001002	CD19 molecule	CD19 (label)	insufficient_evidence	none			No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.
 CL:0000860	classical monocyte	PR:000001020	CD3 epsilon	CD3 (label); CD3E (exact); CD3e (exact)	insufficient_evidence	none			No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.
@@ -32,47 +32,47 @@ CL:0000875	non-classical monocyte	PR:000001206	CX3C chemokine receptor 1		insuff
 CL:0000875	non-classical monocyte	PR:000001002	CD19 molecule	CD19 (label)	insufficient_evidence	none			No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.
 CL:0000875	non-classical monocyte	PR:000001020	CD3 epsilon	CD3 (label); CD3E (exact); CD3e (exact)	insufficient_evidence	none			No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.
 CL:0000875	non-classical monocyte	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	insufficient_evidence	none			No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.
-CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	PR:000001380	interleukin-2 receptor subunit alpha	CD25 (exact)	human	m2_literature_report	Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg	In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127	reports/literature/t_cell_markers.md
-CL:0000898	naive T cell	PR:000001318	L-selectin	CD62 (exact); CD62L (exact)	human	m2_literature_report	Kamigaichi A et al. 2026 (PMID: 42047825; DOI: 10.1007/s00262-026-04357-4; PMC: PMC13125411) -- confirms CD62L used on human CD4+ T cells, though in a Th1 (not naive-T) context	Th1 (CXCR3+CCR4−CCR6− CD62LlowCD4+ T cells)	reports/literature/t_cell_markers.md
-CL:0000898	naive T cell	PR:000001307	CD44 molecule	CD44 (label); CDw44 (exact)	insufficient_evidence	none			CD44 not mentioned anywhere in reports/literature/t_cell_markers.md; not found via a targeted EuropePMC search either ('CD44 human naive T cell surface marker' returned unrelated tissue-resident-memory/B-cell papers).
-CL:0000898	naive T cell	PR:000001015	receptor-type tyrosine-protein phosphatase C isoform CD45RA	CD45RA (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8−/CD4+/CCR7+/CD45RA+	reports/literature/t_cell_markers.md
-CL:0000898	naive T cell	PR:000001203	C-C chemokine receptor type 7	CD197 (exact); CDw197 (exact)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8−/CD4+/CCR7+/CD45RA+	reports/literature/t_cell_markers.md
-CL:0000898	naive T cell	PR:000001869	interleukin-7 receptor subunit alpha	CD127 (exact); CDw127 (exact)	human	m2_literature_report	Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg	In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127	reports/literature/t_cell_markers.md
-CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	PR:000001380	interleukin-2 receptor subunit alpha	CD25 (exact)	human	m2_literature_report	Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg	In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127	reports/literature/t_cell_markers.md
-CL:0000904	central memory CD4-positive, alpha-beta T cell	PR:000001015	receptor-type tyrosine-protein phosphatase C isoform CD45RA	CD45RA (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8−/CD4+/CCR7+/CD45RA−	reports/literature/t_cell_markers.md
-CL:0000904	central memory CD4-positive, alpha-beta T cell	PR:000001203	C-C chemokine receptor type 7	CD197 (exact); CDw197 (exact)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8−/CD4+/CCR7+/CD45RA−	reports/literature/t_cell_markers.md
-CL:0000905	effector memory CD4-positive, alpha-beta T cell	PR:000001015	receptor-type tyrosine-protein phosphatase C isoform CD45RA	CD45RA (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8−/CD4+/CCR7−/CD45RA+	reports/literature/t_cell_markers.md
-CL:0000905	effector memory CD4-positive, alpha-beta T cell	PR:000001203	C-C chemokine receptor type 7	CD197 (exact); CDw197 (exact)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8−/CD4+/CCR7−/CD45RA+	reports/literature/t_cell_markers.md
-CL:0000907	central memory CD8-positive, alpha-beta T cell	PR:000001015	receptor-type tyrosine-protein phosphatase C isoform CD45RA	CD45RA (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Central Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design	CD3+/CD8+/CD4−/CCR7+/CD45RA+	reports/literature/t_cell_markers.md
-CL:0000907	central memory CD8-positive, alpha-beta T cell	PR:000001203	C-C chemokine receptor type 7	CD197 (exact); CDw197 (exact)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Central Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design	CD3+/CD8+/CD4−/CCR7+/CD45RA+	reports/literature/t_cell_markers.md
-CL:0000913	effector memory CD8-positive, alpha-beta T cell	PR:000001015	receptor-type tyrosine-protein phosphatase C isoform CD45RA	CD45RA (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Effector Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design	CD3+/CD8+/CD4−/CCR7+/CD45RA+	reports/literature/t_cell_markers.md
-CL:0000913	effector memory CD8-positive, alpha-beta T cell	PR:000001203	C-C chemokine receptor type 7	CD197 (exact); CDw197 (exact)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Effector Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design	CD3+/CD8+/CD4−/CCR7+/CD45RA+	reports/literature/t_cell_markers.md
-CL:0000938	CD16-negative, CD56-bright natural killer cell, human	PR:000001024	neural cell adhesion molecule 1	CD56 (exact)	human	m2_literature_report	Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0)	human NK cells are typically divided into two main categories on the basis of the density of CD56, the 140-kDa isoform of the neural cell adhesion molecule (NCAM)2, on the cell surface: CD56bright and CD56dim NK cells.	reports/literature/nk_cell_markers.md
-CL:0000938	CD16-negative, CD56-bright natural killer cell, human	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)	human	m2_literature_report	Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360)	CD56bright human NK cells express high levels of CD62L (l-selectin) and CD94 but absent or low levels of CD16 and KIRs	reports/literature/nk_cell_markers.md
-CL:0000938	CD16-negative, CD56-bright natural killer cell, human	PR:000002015	MHC class II histocompatibility antigen alpha chain DRA		human	m2_literature_report	Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0) -- indirect: HLA-D family expression shown on an adaptive NK subset (NK3B), not stated specifically for CD56bright/CD56dim	Notably, NK3B (cluster 1) was distinguished by expression of members of the HLA-D gene family, CD74, CCL5, CD7 and KLRC1, and NK3A exhibited enhanced cytotoxic capabilities (through expression of GZMA, GZMB and PRF1)	reports/literature/nk_cell_markers.md
-CL:0000938	CD16-negative, CD56-bright natural killer cell, human	PR:000001319	SLAM family member 5	CD84 (exact)	insufficient_evidence	none			No CD84-on-NK-cell evidence found in reports/literature/nk_cell_markers.md or a targeted EuropePMC search ('CD84 human natural killer cell surface marker' -- top hits were CD84 in MDSCs/breast cancer/CLL, none NK-specific).
-CL:0000939	CD16-positive, CD56-dim natural killer cell, human	PR:000001024	neural cell adhesion molecule 1	CD56 (exact)	human	m2_literature_report	Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0)	human NK cells are typically divided into two main categories on the basis of the density of CD56, the 140-kDa isoform of the neural cell adhesion molecule (NCAM)2, on the cell surface: CD56bright and CD56dim NK cells.	reports/literature/nk_cell_markers.md
-CL:0000939	CD16-positive, CD56-dim natural killer cell, human	PR:000002015	MHC class II histocompatibility antigen alpha chain DRA		human	m2_literature_report	Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0) -- indirect: HLA-D family expression shown on an adaptive NK subset (NK3B), not stated specifically for CD56bright/CD56dim	Notably, NK3B (cluster 1) was distinguished by expression of members of the HLA-D gene family, CD74, CCL5, CD7 and KLRC1, and NK3A exhibited enhanced cytotoxic capabilities (through expression of GZMA, GZMB and PRF1)	reports/literature/nk_cell_markers.md
-CL:0000939	CD16-positive, CD56-dim natural killer cell, human	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)	human	m2_literature_report	Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360)	In contrast, CD56dim NK cells are CD16hi and express more KIRs but less CD94 and CD62L; they predominate in PB	reports/literature/nk_cell_markers.md
-CL:0000960	T3 B cell	PR:000001318	L-selectin	CD62 (exact); CD62L (exact)	insufficient_evidence	none			CD62L not mentioned in the T3-transitional context in reports/literature/b_cell_markers.md (only mentioned for DN2 B cells: 'lack of CXCR5 and CD62L expression', Sachinidis 2021, a different B cell subset).
-CL:0000960	T3 B cell	PR:000001338	complement receptor type 2	CD21 (exact)	human	m2_literature_report	Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)	The gradual loss of CD10, CD5, and IgM and the upregulation of CD22, CD44, CD21, and CD23 as cells progress from immature to transitional (TI to T2 to T3) to mature naïve cells	reports/literature/b_cell_markers.md
-CL:0000960	T3 B cell	PR:000001880	low affinity immunoglobulin epsilon Fc receptor	CD23 (exact); CD23A (related)	human	m2_literature_report	Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)	The gradual loss of CD10, CD5, and IgM and the upregulation of CD22, CD44, CD21, and CD23 as cells progress from immature to transitional (TI to T2 to T3) to mature naïve cells	reports/literature/b_cell_markers.md
-CL:0000970	unswitched memory B cell	PR:000001963	CD27 molecule	CD27 (label); CD27L (exact)	human	m2_literature_report	Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)	"""**M**: CD19+ CD27+ CD38−/lo"" [memory B cell gating entry]"	reports/literature/b_cell_markers.md
-CL:0000972	class switched memory B cell	PR:000001963	CD27 molecule	CD27 (label); CD27L (exact)	human	m2_literature_report	Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)	"""**M**: CD19+ CD27+ CD38−/lo"" [memory B cell gating entry]"	reports/literature/b_cell_markers.md
-CL:0000980	plasmablast	PR:000001408	ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1	CD38 (exact)	human	m2_literature_report	Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)	"""**ASC**: CD19+ CD27+ CD38hi"" and ""**M**: CD19+ CD27+ CD38−/lo"" and"	reports/literature/b_cell_markers.md
-CL:0000980	plasmablast	PR:000001963	CD27 molecule	CD27 (label); CD27L (exact)	human	m2_literature_report	Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)	"""**ASC**: CD19+ CD27+ CD38hi"" and ""**M**: CD19+ CD27+ CD38−/lo"" and"	reports/literature/b_cell_markers.md
-CL:0000980	plasmablast	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	human	m2_literature_report	Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)	as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired	reports/literature/b_cell_markers.md
-CL:0000980	plasmablast	PR:000001935	syndecan-1	CD138 (exact)	human	m2_literature_report	Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)	"""**CD138neg ASC**: CD138−"" and ""**CD138pos ASC**: CD138+"" [gating labels distinguishing"	reports/literature/b_cell_markers.md
-CL:0000981	double negative memory B cell	PR:000001963	CD27 molecule	CD27 (label); CD27L (exact)	human	m2_literature_report	Sachinidis A & Garyfallos A 2021 (PMID: 34964023; DOI: 10.31138/mjr.32.3.192)	Double negative (DN) B cells, also known as atypical memory B cells, constitute a B cell population that lacks expression of immunoglobulin D and CD27 memory marker.	reports/literature/b_cell_markers.md
-CL:0000990	conventional dendritic cell	PR:000001013	integrin alpha-X	CD11 (exact); CD11C (related); CD11c (exact)	human	m2_literature_report	Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)	Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123−	reports/literature/dc_markers.md
-CL:0001058	plasmacytoid dendritic cell, human	PR:000001013	integrin alpha-X	CD11 (exact); CD11C (related); CD11c (exact)	human	m2_literature_report	Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)	Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123−	reports/literature/dc_markers.md
-CL:0001058	plasmacytoid dendritic cell, human	PR:000001889	CD14 molecule	CD14 (label)	human	m2_literature_report	Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)	DCs were defined as live, LIN(CD3, CD19, CD56)−CD14−HLA-DR+ cells.	reports/literature/dc_markers.md
-CL:0001058	plasmacytoid dendritic cell, human	PR:000001865	interleukin-3 receptor class 2 alpha chain	CD123 (exact)	human	m2_literature_report	Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)	pDCs are CD11c− CD123+ cells best characterized for their type I interferon	reports/literature/dc_markers.md
-CL:0001065	innate lymphoid cell	PR:000001002	CD19 molecule	CD19 (label)	human	m2_literature_report	Krabbendam L et al. 2021 (PMID:33300130; DOI:10.1002/eji.202048696)	Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) FcRεR1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors).	reports/literature/ilc_markers.md
-CL:0001065	innate lymphoid cell	PR:000001020	CD3 epsilon	CD3 (label); CD3E (exact); CD3e (exact)	human	m2_literature_report	Krabbendam L et al. 2021 (PMID:33300130; DOI:10.1002/eji.202048696)	We gated for lymphocytes, excluded doublets and dead cells and selected CD45+CD3− cells	reports/literature/ilc_markers.md
+CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	PR:000001380	interleukin-2 receptor subunit alpha	CD25 (exact)	human	m2_literature_report	Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg	In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000898	naive T cell	PR:000001318	L-selectin	CD62 (exact); CD62L (exact)	human	m2_literature_report	Kamigaichi A et al. 2026 (PMID: 42047825; DOI: 10.1007/s00262-026-04357-4; PMC: PMC13125411) -- confirms CD62L used on human CD4+ T cells, though in a Th1 (not naive-T) context	Th1 (CXCR3+CCR4−CCR6− CD62LlowCD4+ T cells)	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000898	naive T cell	PR:000001307	CD44 molecule	CD44 (label); CDw44 (exact)	insufficient_evidence	none			CD44 not mentioned anywhere in archive/2026-09_literature_narratives/t_cell_markers.md; not found via a targeted EuropePMC search either ('CD44 human naive T cell surface marker' returned unrelated tissue-resident-memory/B-cell papers).
+CL:0000898	naive T cell	PR:000001015	receptor-type tyrosine-protein phosphatase C isoform CD45RA	CD45RA (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8−/CD4+/CCR7+/CD45RA+	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000898	naive T cell	PR:000001203	C-C chemokine receptor type 7	CD197 (exact); CDw197 (exact)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8−/CD4+/CCR7+/CD45RA+	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000898	naive T cell	PR:000001869	interleukin-7 receptor subunit alpha	CD127 (exact); CDw127 (exact)	human	m2_literature_report	Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg	In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	PR:000001380	interleukin-2 receptor subunit alpha	CD25 (exact)	human	m2_literature_report	Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg	In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000904	central memory CD4-positive, alpha-beta T cell	PR:000001015	receptor-type tyrosine-protein phosphatase C isoform CD45RA	CD45RA (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8−/CD4+/CCR7+/CD45RA−	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000904	central memory CD4-positive, alpha-beta T cell	PR:000001203	C-C chemokine receptor type 7	CD197 (exact); CDw197 (exact)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8−/CD4+/CCR7+/CD45RA−	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000905	effector memory CD4-positive, alpha-beta T cell	PR:000001015	receptor-type tyrosine-protein phosphatase C isoform CD45RA	CD45RA (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8−/CD4+/CCR7−/CD45RA+	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000905	effector memory CD4-positive, alpha-beta T cell	PR:000001203	C-C chemokine receptor type 7	CD197 (exact); CDw197 (exact)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)	CD3+/CD8−/CD4+/CCR7−/CD45RA+	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000907	central memory CD8-positive, alpha-beta T cell	PR:000001015	receptor-type tyrosine-protein phosphatase C isoform CD45RA	CD45RA (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Central Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design	CD3+/CD8+/CD4−/CCR7+/CD45RA+	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000907	central memory CD8-positive, alpha-beta T cell	PR:000001203	C-C chemokine receptor type 7	CD197 (exact); CDw197 (exact)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Central Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design	CD3+/CD8+/CD4−/CCR7+/CD45RA+	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000913	effector memory CD8-positive, alpha-beta T cell	PR:000001015	receptor-type tyrosine-protein phosphatase C isoform CD45RA	CD45RA (label)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Effector Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design	CD3+/CD8+/CD4−/CCR7+/CD45RA+	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000913	effector memory CD8-positive, alpha-beta T cell	PR:000001203	C-C chemokine receptor type 7	CD197 (exact); CDw197 (exact)	human	m2_literature_report	Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Effector Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design	CD3+/CD8+/CD4−/CCR7+/CD45RA+	archive/2026-09_literature_narratives/t_cell_markers.md
+CL:0000938	CD16-negative, CD56-bright natural killer cell, human	PR:000001024	neural cell adhesion molecule 1	CD56 (exact)	human	m2_literature_report	Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0)	human NK cells are typically divided into two main categories on the basis of the density of CD56, the 140-kDa isoform of the neural cell adhesion molecule (NCAM)2, on the cell surface: CD56bright and CD56dim NK cells.	archive/2026-09_literature_narratives/nk_cell_markers.md
+CL:0000938	CD16-negative, CD56-bright natural killer cell, human	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)	human	m2_literature_report	Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360)	CD56bright human NK cells express high levels of CD62L (l-selectin) and CD94 but absent or low levels of CD16 and KIRs	archive/2026-09_literature_narratives/nk_cell_markers.md
+CL:0000938	CD16-negative, CD56-bright natural killer cell, human	PR:000002015	MHC class II histocompatibility antigen alpha chain DRA		human	m2_literature_report	Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0) -- indirect: HLA-D family expression shown on an adaptive NK subset (NK3B), not stated specifically for CD56bright/CD56dim	Notably, NK3B (cluster 1) was distinguished by expression of members of the HLA-D gene family, CD74, CCL5, CD7 and KLRC1, and NK3A exhibited enhanced cytotoxic capabilities (through expression of GZMA, GZMB and PRF1)	archive/2026-09_literature_narratives/nk_cell_markers.md
+CL:0000938	CD16-negative, CD56-bright natural killer cell, human	PR:000001319	SLAM family member 5	CD84 (exact)	insufficient_evidence	none			No CD84-on-NK-cell evidence found in archive/2026-09_literature_narratives/nk_cell_markers.md or a targeted EuropePMC search ('CD84 human natural killer cell surface marker' -- top hits were CD84 in MDSCs/breast cancer/CLL, none NK-specific).
+CL:0000939	CD16-positive, CD56-dim natural killer cell, human	PR:000001024	neural cell adhesion molecule 1	CD56 (exact)	human	m2_literature_report	Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0)	human NK cells are typically divided into two main categories on the basis of the density of CD56, the 140-kDa isoform of the neural cell adhesion molecule (NCAM)2, on the cell surface: CD56bright and CD56dim NK cells.	archive/2026-09_literature_narratives/nk_cell_markers.md
+CL:0000939	CD16-positive, CD56-dim natural killer cell, human	PR:000002015	MHC class II histocompatibility antigen alpha chain DRA		human	m2_literature_report	Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0) -- indirect: HLA-D family expression shown on an adaptive NK subset (NK3B), not stated specifically for CD56bright/CD56dim	Notably, NK3B (cluster 1) was distinguished by expression of members of the HLA-D gene family, CD74, CCL5, CD7 and KLRC1, and NK3A exhibited enhanced cytotoxic capabilities (through expression of GZMA, GZMB and PRF1)	archive/2026-09_literature_narratives/nk_cell_markers.md
+CL:0000939	CD16-positive, CD56-dim natural killer cell, human	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)	human	m2_literature_report	Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360)	In contrast, CD56dim NK cells are CD16hi and express more KIRs but less CD94 and CD62L; they predominate in PB	archive/2026-09_literature_narratives/nk_cell_markers.md
+CL:0000960	T3 B cell	PR:000001318	L-selectin	CD62 (exact); CD62L (exact)	insufficient_evidence	none			CD62L not mentioned in the T3-transitional context in archive/2026-09_literature_narratives/b_cell_markers.md (only mentioned for DN2 B cells: 'lack of CXCR5 and CD62L expression', Sachinidis 2021, a different B cell subset).
+CL:0000960	T3 B cell	PR:000001338	complement receptor type 2	CD21 (exact)	human	m2_literature_report	Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)	The gradual loss of CD10, CD5, and IgM and the upregulation of CD22, CD44, CD21, and CD23 as cells progress from immature to transitional (TI to T2 to T3) to mature naïve cells	archive/2026-09_literature_narratives/b_cell_markers.md
+CL:0000960	T3 B cell	PR:000001880	low affinity immunoglobulin epsilon Fc receptor	CD23 (exact); CD23A (related)	human	m2_literature_report	Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)	The gradual loss of CD10, CD5, and IgM and the upregulation of CD22, CD44, CD21, and CD23 as cells progress from immature to transitional (TI to T2 to T3) to mature naïve cells	archive/2026-09_literature_narratives/b_cell_markers.md
+CL:0000970	unswitched memory B cell	PR:000001963	CD27 molecule	CD27 (label); CD27L (exact)	human	m2_literature_report	Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)	"""**M**: CD19+ CD27+ CD38−/lo"" [memory B cell gating entry]"	archive/2026-09_literature_narratives/b_cell_markers.md
+CL:0000972	class switched memory B cell	PR:000001963	CD27 molecule	CD27 (label); CD27L (exact)	human	m2_literature_report	Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)	"""**M**: CD19+ CD27+ CD38−/lo"" [memory B cell gating entry]"	archive/2026-09_literature_narratives/b_cell_markers.md
+CL:0000980	plasmablast	PR:000001408	ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1	CD38 (exact)	human	m2_literature_report	Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)	"""**ASC**: CD19+ CD27+ CD38hi"" and ""**M**: CD19+ CD27+ CD38−/lo"" and"	archive/2026-09_literature_narratives/b_cell_markers.md
+CL:0000980	plasmablast	PR:000001963	CD27 molecule	CD27 (label); CD27L (exact)	human	m2_literature_report	Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)	"""**ASC**: CD19+ CD27+ CD38hi"" and ""**M**: CD19+ CD27+ CD38−/lo"" and"	archive/2026-09_literature_narratives/b_cell_markers.md
+CL:0000980	plasmablast	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	human	m2_literature_report	Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)	as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired	archive/2026-09_literature_narratives/b_cell_markers.md
+CL:0000980	plasmablast	PR:000001935	syndecan-1	CD138 (exact)	human	m2_literature_report	Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)	"""**CD138neg ASC**: CD138−"" and ""**CD138pos ASC**: CD138+"" [gating labels distinguishing"	archive/2026-09_literature_narratives/b_cell_markers.md
+CL:0000981	double negative memory B cell	PR:000001963	CD27 molecule	CD27 (label); CD27L (exact)	human	m2_literature_report	Sachinidis A & Garyfallos A 2021 (PMID: 34964023; DOI: 10.31138/mjr.32.3.192)	Double negative (DN) B cells, also known as atypical memory B cells, constitute a B cell population that lacks expression of immunoglobulin D and CD27 memory marker.	archive/2026-09_literature_narratives/b_cell_markers.md
+CL:0000990	conventional dendritic cell	PR:000001013	integrin alpha-X	CD11 (exact); CD11C (related); CD11c (exact)	human	m2_literature_report	Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)	Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123−	archive/2026-09_literature_narratives/dc_markers.md
+CL:0001058	plasmacytoid dendritic cell, human	PR:000001013	integrin alpha-X	CD11 (exact); CD11C (related); CD11c (exact)	human	m2_literature_report	Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)	Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123−	archive/2026-09_literature_narratives/dc_markers.md
+CL:0001058	plasmacytoid dendritic cell, human	PR:000001889	CD14 molecule	CD14 (label)	human	m2_literature_report	Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)	DCs were defined as live, LIN(CD3, CD19, CD56)−CD14−HLA-DR+ cells.	archive/2026-09_literature_narratives/dc_markers.md
+CL:0001058	plasmacytoid dendritic cell, human	PR:000001865	interleukin-3 receptor class 2 alpha chain	CD123 (exact)	human	m2_literature_report	Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)	pDCs are CD11c− CD123+ cells best characterized for their type I interferon	archive/2026-09_literature_narratives/dc_markers.md
+CL:0001065	innate lymphoid cell	PR:000001002	CD19 molecule	CD19 (label)	human	m2_literature_report	Krabbendam L et al. 2021 (PMID:33300130; DOI:10.1002/eji.202048696)	Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) FcRεR1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors).	archive/2026-09_literature_narratives/ilc_markers.md
+CL:0001065	innate lymphoid cell	PR:000001020	CD3 epsilon	CD3 (label); CD3E (exact); CD3e (exact)	human	m2_literature_report	Krabbendam L et al. 2021 (PMID:33300130; DOI:10.1002/eji.202048696)	We gated for lymphocytes, excluded doublets and dead cells and selected CD45+CD3− cells	archive/2026-09_literature_narratives/ilc_markers.md
 CL:0002393	intermediate monocyte	PR:000001002	CD19 molecule	CD19 (label)	insufficient_evidence	none			No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.
 CL:0002393	intermediate monocyte	PR:000001020	CD3 epsilon	CD3 (label); CD3E (exact); CD3e (exact)	insufficient_evidence	none			No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.
 CL:0002393	intermediate monocyte	PR:000001199	C-C chemokine receptor type 2	CD192 (exact)	insufficient_evidence	none			No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.
 CL:0002393	intermediate monocyte	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	insufficient_evidence	none			No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.
-CL:0002394	CD141-positive myeloid dendritic cell	PR:000002105	thrombomodulin	CD141 (exact)	human	m2_literature_report	Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)	DC1 corresponds to the cross-presenting CD141/BDCA-3+ cDC1, which is best marked by CLEC9A	reports/literature/dc_markers.md
-CL:0002399	CD1c-positive myeloid dendritic cell	PR:000002027	T-cell surface glycoprotein CD1c	CD1C (exact); CD1c (label)	human	m2_literature_report	Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)	DC2 and DC3 correspond to new subdivisions of the CD1C/BDCA-1+ cDC2	reports/literature/dc_markers.md
+CL:0002394	CD141-positive myeloid dendritic cell	PR:000002105	thrombomodulin	CD141 (exact)	human	m2_literature_report	Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)	DC1 corresponds to the cross-presenting CD141/BDCA-3+ cDC1, which is best marked by CLEC9A	archive/2026-09_literature_narratives/dc_markers.md
+CL:0002399	CD1c-positive myeloid dendritic cell	PR:000002027	T-cell surface glycoprotein CD1c	CD1C (exact); CD1c (label)	human	m2_literature_report	Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)	DC2 and DC3 correspond to new subdivisions of the CD1C/BDCA-1+ cDC2	archive/2026-09_literature_narratives/dc_markers.md
diff --git a/reports/regression-followup/corrected/matcher_evaluation.json b/reports/regression-followup/corrected/matcher_evaluation.json
deleted file mode 100644
index 13cbca9..0000000
--- a/reports/regression-followup/corrected/matcher_evaluation.json
+++ /dev/null
@@ -1,97822 +0,0 @@
-{
-  "schema_version": 1,
-  "generated_utc": "2026-09-18T21:08:23.198343+00:00",
-  "inputs": {
-    "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44",
-    "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8",
-    "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e",
-    "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c",
-    "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706",
-    "marker_policy": "317578b4b7fb1a9837b9a61fa85c2dc1ea6469eab4404b0435476ba4a12a1f84",
-    "marker_map": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7"
-  },
-  "benchmark_path": "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\matcher_benchmark.tsv",
-  "matcher": {
-    "version": "0.1.0",
-    "source_hashes": {
-      "cl_match.py": "c810b988a7915b6bc2bf8ae3fa58a55986586d8c0b6734f6a84d9c3d7b4d1f73",
-      "phenotype.py": "6d3e7e59b884365fa48596fe1365b8630053b70a6259bb0e8f42413a55a9514a",
-      "marker_syntax.py": "e40620b1d804eec3c1f05251716092abd7f5a273e11ba91ce61a3345b1872ade",
-      "registry.py": "a225ca650e0278378566bf7134b3d8daa33dabee0c61c3d479d8affddf7a25fd",
-      "evaluation.py": "69dd3abd6c1bbf5a5ae453428269179a5cca8b991c1338bb51097dadf06555c5",
-      "audit.py": "4d2bfeff9583efd80c37d8fef51e06abb887410f4b9d88ce9b68bceace8bc9bb",
-      "candidate_index.py": "d4c58041cb4c4a4033d1457ae9f04d2e4d814a2d80469dd7aced2e696539e9a6",
-      "marker_resolution.py": "2a8245a656ca8d3e77c678b6d3adb3975ff6081de5586979a9a78283134ba7af"
-    }
-  },
-  "config": {
-    "ks": [
-      1,
-      3,
-      5
-    ],
-    "ranking": "production order, including disqualified candidates",
-    "ties": "primary metrics use production order; bounds report tie sensitivity",
-    "denominator": "all cohort cases, including unscorable profiles and absent targets",
-    "marker_resolution": true,
-    "resolution_policy": "explicit_v1",
-    "local_lexical": false,
-    "lexical_limit": 20,
-    "lexical_min_jaccard": 0.5
-  },
-  "candidate_count": 826,
-  "marker_resolution_issues": [
-    {
-      "marker": "CD15",
-      "reason": "policy_withheld",
-      "representation": "unresolved",
-      "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required."
-    },
-    {
-      "marker": "CD16",
-      "reason": "policy_withheld",
-      "representation": "unresolved",
-      "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required."
-    },
-    {
-      "marker": "CD1D-A-GALCER",
-      "reason": "policy_withheld",
-      "representation": "reagent_gate",
-      "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein."
-    },
-    {
-      "marker": "CD3",
-      "reason": "policy_withheld",
-      "representation": "unresolved",
-      "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required."
-    },
-    {
-      "marker": "CD57",
-      "reason": "policy_withheld",
-      "representation": "reagent_gate",
-      "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein."
-    },
-    {
-      "marker": "CD8",
-      "reason": "policy_withheld",
-      "representation": "unresolved",
-      "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required."
-    },
-    {
-      "marker": "HLA-DR",
-      "reason": "policy_withheld",
-      "representation": "complex",
-      "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence."
-    },
-    {
-      "marker": "IGA",
-      "reason": "policy_withheld",
-      "representation": "protein_family",
-      "rationale": "Registry notes document a non-single-protein or pan-marker representation."
-    },
-    {
-      "marker": "IGD",
-      "reason": "policy_withheld",
-      "representation": "protein_family",
-      "rationale": "Registry notes document a non-single-protein or pan-marker representation."
-    },
-    {
-      "marker": "IGE",
-      "reason": "policy_withheld",
-      "representation": "protein_family",
-      "rationale": "Registry notes document a non-single-protein or pan-marker representation."
-    },
-    {
-      "marker": "IGG",
-      "reason": "policy_withheld",
-      "representation": "protein_family",
-      "rationale": "Registry notes document a non-single-protein or pan-marker representation."
-    },
-    {
-      "marker": "IGM",
-      "reason": "policy_withheld",
-      "representation": "protein_family",
-      "rationale": "Registry notes document a non-single-protein or pan-marker representation."
-    },
-    {
-      "marker": "MR1",
-      "reason": "policy_withheld",
-      "representation": "unresolved",
-      "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required."
-    },
-    {
-      "marker": "TCR",
-      "reason": "policy_withheld",
-      "representation": "protein_family",
-      "rationale": "Registry notes document a non-single-protein or pan-marker representation."
-    },
-    {
-      "marker": "TCRVA24-JA18",
-      "reason": "policy_withheld",
-      "representation": "complex",
-      "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence."
-    },
-    {
-      "marker": "TCRAB",
-      "reason": "policy_withheld",
-      "representation": "complex",
-      "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence."
-    },
-    {
-      "marker": "TCRGD",
-      "reason": "policy_withheld",
-      "representation": "complex",
-      "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence."
-    },
-    {
-      "marker": "TETRAMER",
-      "reason": "policy_withheld",
-      "representation": "reagent_gate",
-      "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein."
-    },
-    {
-      "marker": "V",
-      "reason": "policy_withheld",
-      "representation": "unresolved",
-      "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification."
-    },
-    {
-      "marker": "DELTA",
-      "reason": "policy_withheld",
-      "representation": "unresolved",
-      "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification."
-    },
-    {
-      "marker": "DELTA1",
-      "reason": "policy_withheld",
-      "representation": "unresolved",
-      "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification."
-    },
-    {
-      "marker": "GAMMA",
-      "reason": "policy_withheld",
-      "representation": "unresolved",
-      "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification."
-    }
-  ],
-  "cases": [
-    {
-      "case_id": "provisional/SOULCAP:SC000001/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000001",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000623"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": 6,
-      "rank_best": 6,
-      "rank_worst": 32,
-      "missing_targets": [],
-      "candidates": [
-        {
-          "cl_id": "CL:0002338",
-          "label": "CD56-positive, CD161-positive immature natural killer cell, human",
-          "score": 19,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD34-",
-            "CD19-",
-            "CD56+ (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD3-",
-            "CD45+",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-",
-            "CD33-/CD64- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": [
-            {
-              "sense": "negative",
-              "pr": "PR:000001002",
-              "relation": "CL:4030046",
-              "asserted": "False",
-              "paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD19",
-                  "tokens": [
-                    "CD19"
-                  ]
-                },
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000001002",
-                  "tokens": [
-                    "CD19"
-                  ]
-                }
-              ]
-            },
-            {
-              "sense": "negative",
-              "pr": "PR:000001003",
-              "relation": "CL:4030046",
-              "asserted": "True",
-              "paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD34",
-                  "tokens": [
-                    "CD34"
-                  ]
-                },
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000001003",
-                  "tokens": [
-                    "CD34"
-                  ]
-                }
-              ]
-            },
-            {
-              "sense": "negative",
-              "pr": "PR:000001020",
-              "relation": "CL:4030046",
-              "asserted": "False",
-              "paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            },
-            {
-              "sense": "negative",
-              "pr": "PR:000001289",
-              "relation": "CL:4030046",
-              "asserted": "False",
-              "paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD20",
-                  "tokens": [
-                    "CD20"
-                  ]
-                },
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000001289",
-                  "tokens": [
-                    "CD20"
-                  ]
-                }
-              ]
-            },
-            {
-              "sense": "negative",
-              "pr": "PR:000001889",
-              "relation": "CL:4030046",
-              "asserted": "False",
-              "paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD14",
-                  "tokens": [
-                    "CD14"
-                  ]
-                },
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000001889",
-                  "tokens": [
-                    "CD14"
-                  ]
-                }
-              ]
-            },
-            {
-              "sense": "positive",
-              "pr": "PR:000001024",
-              "relation": "RO:0002104",
-              "asserted": "True",
-              "paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD56",
-                  "tokens": [
-                    "CD56"
-                  ]
-                },
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000001024",
-                  "tokens": [
-                    "CD56"
-                  ]
-                }
-              ]
-            },
-            {
-              "sense": "positive",
-              "pr": "PR:000001381",
-              "relation": "RO:0002104",
-              "asserted": "True",
-              "paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD122",
-                  "tokens": [
-                    "CD122"
-                  ]
-                }
-              ]
-            },
-            {
-              "sense": "positive",
-              "pr": "PR:000001874",
-              "relation": "RO:0002104",
-              "asserted": "True",
-              "paths": []
-            },
-            {
-              "sense": "positive",
-              "pr": "PR:000002065",
-              "relation": "RO:0002104",
-              "asserted": "True",
-              "paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD117",
-                  "tokens": [
-                    "CD117"
-                  ]
-                },
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000002065",
-                  "tokens": [
-                    "CD117"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "score": 15,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19-",
-            "CD56+ (hi) (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD3-",
-            "CD45+",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-",
-            "CD33-/CD64- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": [
-            {
-              "sense": "high",
-              "pr": "PR:000001024",
-              "relation": "RO:0015015",
-              "asserted": "True",
-              "paths": [
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-        "change": "unchanged",
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-        "before_status": "below_top_5",
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-        "after_rank": 13,
-        "before_status": "below_top_5",
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-      {
-        "case_id": "provisional/SOULCAP:SC000040/Exact",
-        "change": "unchanged",
-        "before_rank": 33,
-        "after_rank": 33,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
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-      {
-        "case_id": "provisional/SOULCAP:SC000041/Exact",
-        "change": "unchanged",
-        "before_rank": 14,
-        "after_rank": 14,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000042/Exact",
-        "change": "unchanged",
-        "before_rank": 18,
-        "after_rank": 18,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000043/Exact",
-        "change": "unchanged",
-        "before_rank": 18,
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-        "before_status": "below_top_5",
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-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
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-        "case_id": "provisional/SOULCAP:SC000045/Exact",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "target_not_in_index",
-        "after_status": "target_not_in_index"
-      },
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-        "case_id": "provisional/SOULCAP:SC000046/Broad",
-        "change": "unchanged",
-        "before_rank": 87,
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-        "before_status": "below_top_5",
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-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000047/Broad",
-        "change": "regressed",
-        "before_rank": 127,
-        "after_rank": 132,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000048/Broad",
-        "change": "regressed",
-        "before_rank": 119,
-        "after_rank": 121,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000049/Broad",
-        "change": "unchanged",
-        "before_rank": 87,
-        "after_rank": 87,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
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-        "case_id": "provisional/SOULCAP:SC000050/Broad",
-        "change": "unchanged",
-        "before_rank": 120,
-        "after_rank": 120,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000051/Broad",
-        "change": "regressed",
-        "before_rank": 114,
-        "after_rank": 120,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000052/Broad",
-        "change": "regressed",
-        "before_rank": 120,
-        "after_rank": 126,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000053/Broad",
-        "change": "improved",
-        "before_rank": 115,
-        "after_rank": 88,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
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-        "case_id": "provisional/SOULCAP:SC000054/Broad",
-        "change": "unchanged",
-        "before_rank": 87,
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-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
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-        "case_id": "provisional/SOULCAP:SC000055/Broad",
-        "change": "unchanged",
-        "before_rank": 120,
-        "after_rank": 120,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000056/Broad",
-        "change": "regressed",
-        "before_rank": 114,
-        "after_rank": 120,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000057/Broad",
-        "change": "regressed",
-        "before_rank": 120,
-        "after_rank": 126,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000058/Broad",
-        "change": "improved",
-        "before_rank": 120,
-        "after_rank": 89,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000059/Exact",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "invalid_profile",
-        "after_status": "invalid_profile"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000060/Exact",
-        "change": "unchanged",
-        "before_rank": null,
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-        "change": "unchanged",
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-        "before_status": "target_not_in_index",
-        "after_status": "target_not_in_index"
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-        "before_rank": 70,
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-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
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-        "change": "improved",
-        "before_rank": 125,
-        "after_rank": 60,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
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-        "case_id": "provisional/SOULCAP:SC000064/Broad",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
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-        "case_id": "provisional/SOULCAP:SC000065/Broad",
-        "change": "unchanged",
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-        "before_status": "target_not_in_index",
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-        "change": "unchanged",
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-        "change": "unchanged",
-        "before_rank": null,
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-        "after_status": "target_not_in_index"
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-        "change": "unchanged",
-        "before_rank": null,
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-        "before_status": "target_not_in_index",
-        "after_status": "target_not_in_index"
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-        "change": "improved",
-        "before_rank": 117,
-        "after_rank": 114,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
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-        "case_id": "provisional/SOULCAP:SC000074/Exact",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "invalid_profile",
-        "after_status": "invalid_profile"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000082/Exact",
-        "change": "unchanged",
-        "before_rank": 246,
-        "after_rank": 246,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000085/Exact",
-        "change": "unchanged",
-        "before_rank": 247,
-        "after_rank": 247,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000087/Exact",
-        "change": "unchanged",
-        "before_rank": 249,
-        "after_rank": 249,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
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-        "case_id": "provisional/SOULCAP:SC000089/Exact",
-        "change": "unchanged",
-        "before_rank": 246,
-        "after_rank": 246,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000092/Exact",
-        "change": "unchanged",
-        "before_rank": 250,
-        "after_rank": 250,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000096/Exact",
-        "change": "unchanged",
-        "before_rank": 246,
-        "after_rank": 246,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000099/Exact",
-        "change": "unchanged",
-        "before_rank": 247,
-        "after_rank": 247,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000103/Exact",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "target_not_in_index",
-        "after_status": "target_not_in_index"
-      }
-    ]
-  }
-}
diff --git a/reports/regression-followup/legacy/matcher_evaluation.json b/reports/regression-followup/legacy/matcher_evaluation.json
deleted file mode 100644
index ec3acac..0000000
--- a/reports/regression-followup/legacy/matcher_evaluation.json
+++ /dev/null
@@ -1,14489 +0,0 @@
-{
-  "schema_version": 1,
-  "generated_utc": "2026-09-18T21:08:16.963749+00:00",
-  "inputs": {
-    "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44",
-    "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8",
-    "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e",
-    "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c",
-    "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706"
-  },
-  "benchmark_path": "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\matcher_benchmark.tsv",
-  "matcher": {
-    "version": "0.1.0",
-    "source_hashes": {
-      "cl_match.py": "c810b988a7915b6bc2bf8ae3fa58a55986586d8c0b6734f6a84d9c3d7b4d1f73",
-      "phenotype.py": "6d3e7e59b884365fa48596fe1365b8630053b70a6259bb0e8f42413a55a9514a",
-      "marker_syntax.py": "e40620b1d804eec3c1f05251716092abd7f5a273e11ba91ce61a3345b1872ade",
-      "registry.py": "a225ca650e0278378566bf7134b3d8daa33dabee0c61c3d479d8affddf7a25fd",
-      "evaluation.py": "69dd3abd6c1bbf5a5ae453428269179a5cca8b991c1338bb51097dadf06555c5",
-      "audit.py": "4d2bfeff9583efd80c37d8fef51e06abb887410f4b9d88ce9b68bceace8bc9bb",
-      "candidate_index.py": "d4c58041cb4c4a4033d1457ae9f04d2e4d814a2d80469dd7aced2e696539e9a6",
-      "marker_resolution.py": "2a8245a656ca8d3e77c678b6d3adb3975ff6081de5586979a9a78283134ba7af"
-    }
-  },
-  "config": {
-    "ks": [
-      1,
-      3,
-      5
-    ],
-    "ranking": "production order, including disqualified candidates",
-    "ties": "primary metrics use production order; bounds report tie sensitivity",
-    "denominator": "all cohort cases, including unscorable profiles and absent targets",
-    "marker_resolution": false,
-    "resolution_policy": "legacy",
-    "local_lexical": false,
-    "lexical_limit": 20,
-    "lexical_min_jaccard": 0.5
-  },
-  "candidate_count": 826,
-  "marker_resolution_issues": [],
-  "cases": [
-    {
-      "case_id": "provisional/SOULCAP:SC000001/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000001",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000623"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": 6,
-      "rank_best": 6,
-      "rank_worst": 32,
-      "missing_targets": [],
-      "candidates": [
-        {
-          "cl_id": "CL:0002338",
-          "label": "CD56-positive, CD161-positive immature natural killer cell, human",
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-            "CD20+ (1 of 2 alt.)",
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-            "CD16-",
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-            "CD20+ (1 of 2 alt.)",
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-          "resolution_evidence": []
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-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
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-            "CD8-"
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-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
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-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            "CD8-"
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "CD45+",
-            "CD3+",
-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "TCRAB-/TCRGD+ (no axiom on any alt.)",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-      "cohort": "provisional",
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-            "CD19- (1 of 2 alt.)",
-            "CD123-"
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-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
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-          "resolution_evidence": []
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-        {
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-          "label": "Kit-positive erythroid progenitor cell",
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-            "CD15-/CD66B- (no axiom on any alt.)",
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-        {
-          "cl_id": "CL:0000900",
-          "label": "naive thymus-derived CD8-positive, alpha-beta T cell",
-          "score": 2,
-          "matched": [],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": [],
-          "rank": 253,
-          "rank_best": 242,
-          "rank_worst": 258
-        }
-      ],
-      "status": "below_top_5",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000096/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000096",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000905"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": 238,
-      "rank_best": 238,
-      "rank_worst": 247,
-      "missing_targets": [],
-      "candidates": [
-        {
-          "cl_id": "CL:0001057",
-          "label": "myeloid dendritic cell, human",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0002000",
-          "label": "Kit-positive erythroid progenitor cell",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0001024",
-          "label": "CD34-positive, CD38-negative hematopoietic stem cell",
-          "score": 12,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0002343",
-          "label": "decidual natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        }
-      ],
-      "target_results": [
-        {
-          "cl_id": "CL:0000905",
-          "label": "effector memory CD4-positive, alpha-beta T cell",
-          "score": 3,
-          "matched": [],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": [],
-          "rank": 238,
-          "rank_best": 238,
-          "rank_worst": 247
-        }
-      ],
-      "status": "below_top_5",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000099/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000099",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000913"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": 239,
-      "rank_best": 238,
-      "rank_worst": 247,
-      "missing_targets": [],
-      "candidates": [
-        {
-          "cl_id": "CL:0001057",
-          "label": "myeloid dendritic cell, human",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0002000",
-          "label": "Kit-positive erythroid progenitor cell",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0001024",
-          "label": "CD34-positive, CD38-negative hematopoietic stem cell",
-          "score": 12,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0002343",
-          "label": "decidual natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        }
-      ],
-      "target_results": [
-        {
-          "cl_id": "CL:0000913",
-          "label": "effector memory CD8-positive, alpha-beta T cell",
-          "score": 3,
-          "matched": [],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": [],
-          "rank": 239,
-          "rank_best": 238,
-          "rank_worst": 247
-        }
-      ],
-      "status": "below_top_5",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000103/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000103",
-      "match_type": "Exact",
-      "targets": [
-        "CL:4030002"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": null,
-      "rank_best": null,
-      "rank_worst": null,
-      "missing_targets": [
-        "CL:4030002"
-      ],
-      "candidates": [
-        {
-          "cl_id": "CL:0001057",
-          "label": "myeloid dendritic cell, human",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0002000",
-          "label": "Kit-positive erythroid progenitor cell",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0001024",
-          "label": "CD34-positive, CD38-negative hematopoietic stem cell",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0002343",
-          "label": "decidual natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        }
-      ],
-      "target_results": [],
-      "status": "target_not_in_index",
-      "note": ""
-    }
-  ],
-  "metrics": {
-    "reviewed": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "provisional": {
-      "cases": 80,
-      "mrr": 0.1524095320342756,
-      "statuses": {
-        "below_top_5": 42,
-        "hit_at_5": 19,
-        "invalid_profile": 6,
-        "target_not_in_index": 13
-      },
-      "cases_with_missing_targets": 15,
-      "top1_disqualified": 0,
-      "hit_at_1": 0.0875,
-      "hit_at_1_optimistic": 0.125,
-      "hit_at_1_pessimistic": 0.0,
-      "hit_at_3": 0.15,
-      "hit_at_3_optimistic": 0.2,
-      "hit_at_3_pessimistic": 0.0875,
-      "hit_at_5": 0.2375,
-      "hit_at_5_optimistic": 0.275,
-      "hit_at_5_pessimistic": 0.1
-    }
-  },
-  "by_relation": {
-    "reviewed/Exact": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "reviewed/Broad": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "reviewed/Narrow": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "reviewed/Related": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "provisional/Exact": {
-      "cases": 50,
-      "mrr": 0.15217520145714408,
-      "statuses": {
-        "below_top_5": 26,
-        "hit_at_5": 12,
-        "invalid_profile": 6,
-        "target_not_in_index": 6
-      },
-      "cases_with_missing_targets": 8,
-      "top1_disqualified": 0,
-      "hit_at_1": 0.08,
-      "hit_at_1_optimistic": 0.14,
-      "hit_at_1_pessimistic": 0.0,
-      "hit_at_3": 0.16,
-      "hit_at_3_optimistic": 0.18,
-      "hit_at_3_pessimistic": 0.08,
-      "hit_at_5": 0.24,
-      "hit_at_5_optimistic": 0.24,
-      "hit_at_5_pessimistic": 0.1
-    },
-    "provisional/Broad": {
-      "cases": 30,
-      "mrr": 0.1528000829961614,
-      "statuses": {
-        "hit_at_5": 7,
-        "below_top_5": 16,
-        "target_not_in_index": 7
-      },
-      "cases_with_missing_targets": 7,
-      "top1_disqualified": 0,
-      "hit_at_1": 0.1,
-      "hit_at_1_optimistic": 0.1,
-      "hit_at_1_pessimistic": 0.0,
-      "hit_at_3": 0.13333333333333333,
-      "hit_at_3_optimistic": 0.23333333333333334,
-      "hit_at_3_pessimistic": 0.1,
-      "hit_at_5": 0.23333333333333334,
-      "hit_at_5_optimistic": 0.3333333333333333,
-      "hit_at_5_pessimistic": 0.1
-    },
-    "provisional/Narrow": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "provisional/Related": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    }
-  }
-}
diff --git a/reports/regression-followup/legacy/matcher_evaluation.md b/reports/regression-followup/legacy/matcher_evaluation.md
deleted file mode 100644
index 5ed8fdf..0000000
--- a/reports/regression-followup/legacy/matcher_evaluation.md
+++ /dev/null
@@ -1,195 +0,0 @@
-# Matcher evaluation
-
-Target retrieval only; provisional agreement is not validated accuracy.
-All cohort cases remain in denominators, including invalid profiles and absent targets.
-Primary ranks retain production tie ordering and disqualified candidates. Bounds show tie sensitivity.
-
-## Metrics
-
-```json
-{
-  "reviewed": {
-    "cases": 0,
-    "mrr": null,
-    "statuses": {},
-    "cases_with_missing_targets": 0,
-    "top1_disqualified": 0,
-    "hit_at_1": null,
-    "hit_at_1_optimistic": null,
-    "hit_at_1_pessimistic": null,
-    "hit_at_3": null,
-    "hit_at_3_optimistic": null,
-    "hit_at_3_pessimistic": null,
-    "hit_at_5": null,
-    "hit_at_5_optimistic": null,
-    "hit_at_5_pessimistic": null
-  },
-  "provisional": {
-    "cases": 80,
-    "mrr": 0.1524095320342756,
-    "statuses": {
-      "below_top_5": 42,
-      "hit_at_5": 19,
-      "invalid_profile": 6,
-      "target_not_in_index": 13
-    },
-    "cases_with_missing_targets": 15,
-    "top1_disqualified": 0,
-    "hit_at_1": 0.0875,
-    "hit_at_1_optimistic": 0.125,
-    "hit_at_1_pessimistic": 0.0,
-    "hit_at_3": 0.15,
-    "hit_at_3_optimistic": 0.2,
-    "hit_at_3_pessimistic": 0.0875,
-    "hit_at_5": 0.2375,
-    "hit_at_5_optimistic": 0.275,
-    "hit_at_5_pessimistic": 0.1
-  }
-}
-```
-
-## Relation breakdown
-
-```json
-{
-  "reviewed/Exact": {
-    "cases": 0,
-    "mrr": null,
-    "statuses": {},
-    "cases_with_missing_targets": 0,
-    "top1_disqualified": 0,
-    "hit_at_1": null,
-    "hit_at_1_optimistic": null,
-    "hit_at_1_pessimistic": null,
-    "hit_at_3": null,
-    "hit_at_3_optimistic": null,
-    "hit_at_3_pessimistic": null,
-    "hit_at_5": null,
-    "hit_at_5_optimistic": null,
-    "hit_at_5_pessimistic": null
-  },
-  "reviewed/Broad": {
-    "cases": 0,
-    "mrr": null,
-    "statuses": {},
-    "cases_with_missing_targets": 0,
-    "top1_disqualified": 0,
-    "hit_at_1": null,
-    "hit_at_1_optimistic": null,
-    "hit_at_1_pessimistic": null,
-    "hit_at_3": null,
-    "hit_at_3_optimistic": null,
-    "hit_at_3_pessimistic": null,
-    "hit_at_5": null,
-    "hit_at_5_optimistic": null,
-    "hit_at_5_pessimistic": null
-  },
-  "reviewed/Narrow": {
-    "cases": 0,
-    "mrr": null,
-    "statuses": {},
-    "cases_with_missing_targets": 0,
-    "top1_disqualified": 0,
-    "hit_at_1": null,
-    "hit_at_1_optimistic": null,
-    "hit_at_1_pessimistic": null,
-    "hit_at_3": null,
-    "hit_at_3_optimistic": null,
-    "hit_at_3_pessimistic": null,
-    "hit_at_5": null,
-    "hit_at_5_optimistic": null,
-    "hit_at_5_pessimistic": null
-  },
-  "reviewed/Related": {
-    "cases": 0,
-    "mrr": null,
-    "statuses": {},
-    "cases_with_missing_targets": 0,
-    "top1_disqualified": 0,
-    "hit_at_1": null,
-    "hit_at_1_optimistic": null,
-    "hit_at_1_pessimistic": null,
-    "hit_at_3": null,
-    "hit_at_3_optimistic": null,
-    "hit_at_3_pessimistic": null,
-    "hit_at_5": null,
-    "hit_at_5_optimistic": null,
-    "hit_at_5_pessimistic": null
-  },
-  "provisional/Exact": {
-    "cases": 50,
-    "mrr": 0.15217520145714408,
-    "statuses": {
-      "below_top_5": 26,
-      "hit_at_5": 12,
-      "invalid_profile": 6,
-      "target_not_in_index": 6
-    },
-    "cases_with_missing_targets": 8,
-    "top1_disqualified": 0,
-    "hit_at_1": 0.08,
-    "hit_at_1_optimistic": 0.14,
-    "hit_at_1_pessimistic": 0.0,
-    "hit_at_3": 0.16,
-    "hit_at_3_optimistic": 0.18,
-    "hit_at_3_pessimistic": 0.08,
-    "hit_at_5": 0.24,
-    "hit_at_5_optimistic": 0.24,
-    "hit_at_5_pessimistic": 0.1
-  },
-  "provisional/Broad": {
-    "cases": 30,
-    "mrr": 0.1528000829961614,
-    "statuses": {
-      "hit_at_5": 7,
-      "below_top_5": 16,
-      "target_not_in_index": 7
-    },
-    "cases_with_missing_targets": 7,
-    "top1_disqualified": 0,
-    "hit_at_1": 0.1,
-    "hit_at_1_optimistic": 0.1,
-    "hit_at_1_pessimistic": 0.0,
-    "hit_at_3": 0.13333333333333333,
-    "hit_at_3_optimistic": 0.23333333333333334,
-    "hit_at_3_pessimistic": 0.1,
-    "hit_at_5": 0.23333333333333334,
-    "hit_at_5_optimistic": 0.3333333333333333,
-    "hit_at_5_pessimistic": 0.1
-  },
-  "provisional/Narrow": {
-    "cases": 0,
-    "mrr": null,
-    "statuses": {},
-    "cases_with_missing_targets": 0,
-    "top1_disqualified": 0,
-    "hit_at_1": null,
-    "hit_at_1_optimistic": null,
-    "hit_at_1_pessimistic": null,
-    "hit_at_3": null,
-    "hit_at_3_optimistic": null,
-    "hit_at_3_pessimistic": null,
-    "hit_at_5": null,
-    "hit_at_5_optimistic": null,
-    "hit_at_5_pessimistic": null
-  },
-  "provisional/Related": {
-    "cases": 0,
-    "mrr": null,
-    "statuses": {},
-    "cases_with_missing_targets": 0,
-    "top1_disqualified": 0,
-    "hit_at_1": null,
-    "hit_at_1_optimistic": null,
-    "hit_at_1_pessimistic": null,
-    "hit_at_3": null,
-    "hit_at_3_optimistic": null,
-    "hit_at_3_pessimistic": null,
-    "hit_at_5": null,
-    "hit_at_5_optimistic": null,
-    "hit_at_5_pessimistic": null
-  }
-}
-```
-
-See matcher_evaluation.tsv for per-case failures and matcher_evaluation.json for full evidence and provenance.
diff --git a/reports/regression-followup/legacy/matcher_evaluation.tsv b/reports/regression-followup/legacy/matcher_evaluation.tsv
deleted file mode 100644
index e878348..0000000
--- a/reports/regression-followup/legacy/matcher_evaluation.tsv
+++ /dev/null
@@ -1,81 +0,0 @@
-case_id	cohort	subject_id	match_type	targets	status	rank	rank_best	rank_worst	missing_targets	note	candidates	target_results
-provisional/SOULCAP:SC000001/Exact	provisional	SOULCAP:SC000001	Exact	"[""CL:0000623""]"	below_top_5	6	6	32	[]		"[{""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (hi) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (hi) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+/CD56:high (no axiom on any alt.)"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 6, ""rank_best"": 6, ""rank_worst"": 32}]"
-provisional/SOULCAP:SC000002/Exact	provisional	SOULCAP:SC000002	Exact	"[""CL:0000938""]"	hit_at_5	1	1	2	[]		"[{""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56:high (hi)"", ""CD16- (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56:high (hi)"", ""CD16- (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD56:high"", ""CD127-"", ""CD16-/CD16:low (no axiom on any alt.)"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56:high"", ""CD127-"", ""CD16-/CD16:low (no axiom on any alt.)"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000823"", ""label"": ""immature natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56:high"", ""CD127-"", ""CD16-/CD16:low (no axiom on any alt.)"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56:high (hi)"", ""CD16- (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]"
-provisional/SOULCAP:SC000003/Exact	provisional	SOULCAP:SC000003	Exact	"[""CL:0000939""]"	hit_at_5	1	1	2	[]		"[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD45+"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+/CD56:high (no axiom on any alt.)"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000823"", ""label"": ""immature natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+/CD56:high (no axiom on any alt.)"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]"
-provisional/SOULCAP:SC000004/Broad	provisional	SOULCAP:SC000004	Broad	"[""CL:0000939""]"	hit_at_5	1	1	2	[]		"[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD45+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002346"", ""label"": ""Dx5-negative, NK1.1-positive immature natural killer cell, mouse"", ""score"": 16, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002438"", ""label"": ""NK1.1-positive natural killer cell, mouse"", ""score"": 16, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]"
-provisional/SOULCAP:SC000005/Broad	provisional	SOULCAP:SC000005	Broad	"[""CL:0000939""]"	hit_at_5	1	1	2	[]		"[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD45+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000823"", ""label"": ""immature natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]"
-provisional/SOULCAP:SC000006/Broad	provisional	SOULCAP:SC000006	Broad	"[""CL:0001074""]"	hit_at_5	3	3	3	[]		"[{""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 15, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001076"", ""label"": ""NKp46-positive innate lymphoid cell, human"", ""score"": 15, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001074"", ""label"": ""CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human"", ""score"": 14, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 13, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001072"", ""label"": ""CD34-negative, CD117-positive innate lymphoid cell, human"", ""score"": 11, ""matched"": [""CD3-"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD56+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0001074"", ""label"": ""CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human"", ""score"": 14, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 3, ""rank_best"": 3, ""rank_worst"": 3}]"
-provisional/SOULCAP:SC000007/Exact	provisional	SOULCAP:SC000007	Exact	"[""CL:0001065""]"	below_top_5	155	155	159	[]		"[{""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 23, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 23, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 23, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD123-""], ""gaps"": [""CD45+"", ""CD127+"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002089"", ""label"": ""group 2 innate lymphoid cell, mouse"", ""score"": 23, ""matched"": [""CD33- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD127+""], ""gaps"": [""CD34-"", ""CD45+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0001065"", ""label"": ""innate lymphoid cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD19-"", ""CD3-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD127+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 155, ""rank_best"": 155, ""rank_worst"": 159}]"
-provisional/SOULCAP:SC000008/Exact	provisional	SOULCAP:SC000008	Exact	"[""CL:0001067""]"	below_top_5	161	150	165	[]		"[{""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117-"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117-"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117-"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 27, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD56-"", ""CD123-""], ""gaps"": [""CD45+"", ""CD127+"", ""CD117-"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002089"", ""label"": ""group 2 innate lymphoid cell, mouse"", ""score"": 27, ""matched"": [""CD33- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD127+"", ""CD56-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD117-"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0001067"", ""label"": ""group 1 innate lymphoid cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD19-"", ""CD3-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD127+"", ""CD56-"", ""CD117-"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 161, ""rank_best"": 150, ""rank_worst"": 165}]"
-provisional/SOULCAP:SC000009/Exact	provisional	SOULCAP:SC000009	Exact	"[""CL:0001081""]"	below_top_5	26	25	32	[]		"[{""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 29, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD117:low (dim) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD127+"", ""CD294+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 27, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD56-"", ""CD123-""], ""gaps"": [""CD45+"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0001081"", ""label"": ""group 2 innate lymphoid cell, human"", ""score"": 23, ""matched"": [""CD3-"", ""CD19-"", ""CD3-"", ""CD127+"", ""CD294+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD56-"", ""CD117:low/CD117- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 26, ""rank_best"": 25, ""rank_worst"": 32}]"
-provisional/SOULCAP:SC000010/Exact	provisional	SOULCAP:SC000010	Exact	"[""CL:0001078""]"	below_top_5	118	118	120	[]		"[{""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 29, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD117+ (dim)""], ""gaps"": [""CD34-"", ""CD127+"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002344"", ""label"": ""CD56-negative, CD161-positive immature natural killer cell, human"", ""score"": 29, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117+"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117+"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117+"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0001078"", ""label"": ""group 3 innate lymphoid cell, human"", ""score"": 19, ""matched"": [""CD3-"", ""CD19-"", ""CD3-"", ""CD127+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD56:low/CD56- (no axiom on any alt.)"", ""CD117+"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 118, ""rank_best"": 118, ""rank_worst"": 120}]"
-provisional/SOULCAP:SC000011/Exact	provisional	SOULCAP:SC000011	Exact	"[""CL:0000990""]"	below_top_5	18	15	21	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 21, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD3-"", ""CD19-"", ""CD56-"", ""CD127-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""CD11C:high"", ""HLA-DR+""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000782"", ""label"": ""myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002399"", ""label"": ""CD1c-positive myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000990"", ""label"": ""conventional dendritic cell"", ""score"": 13, ""matched"": [""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD123:not:high/CD193- (no axiom on any alt.)"", ""CD123:not:high/CD303- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 18, ""rank_best"": 15, ""rank_worst"": 21}]"
-provisional/SOULCAP:SC000012/Exact	provisional	SOULCAP:SC000012	Exact	"[""CL:0002394""]"	hit_at_5	2	1	2	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD141+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 21, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD3-"", ""CD19-"", ""CD56-"", ""CD127-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""CD11C:high"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000782"", ""label"": ""myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0011031"", ""label"": ""monocyte-derived dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD141+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 2, ""rank_best"": 1, ""rank_worst"": 2}]"
-provisional/SOULCAP:SC000013/Exact	provisional	SOULCAP:SC000013	Exact	"[""CL:0002399""]"	hit_at_5	2	1	2	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002399"", ""label"": ""CD1c-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD1C+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 21, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD3-"", ""CD19-"", ""CD56-"", ""CD127-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""CD11C:high"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000782"", ""label"": ""myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0002399"", ""label"": ""CD1c-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD1C+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 2, ""rank_best"": 1, ""rank_worst"": 2}]"
-provisional/SOULCAP:SC000014/Exact	provisional	SOULCAP:SC000014	Exact	"[""CL:0001058""]"	below_top_5	34	27	42	[]		"[{""cl_id"": ""CL:0000991"", ""label"": ""CD11c-negative plasmacytoid dendritic cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD303+ (1 of 3 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000994"", ""label"": ""immature CD11c-negative plasmacytoid dendritic cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD303+ (1 of 3 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000996"", ""label"": ""mature CD11c-negative plasmacytoid dendritic cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD303+ (1 of 3 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002008"", ""label"": ""CD34-positive, CD38-positive eosinophil progenitor cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD193-/FCER1A-/CD303+ (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD193-/FCER1A-/CD303+ (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0001058"", ""label"": ""plasmacytoid dendritic cell, human"", ""score"": 12, ""matched"": [""CD3-"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD45+"", ""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD193-/FCER1A-/CD303+ (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 27, ""rank_worst"": 42}]"
-provisional/SOULCAP:SC000015/Exact	provisional	SOULCAP:SC000015	Exact	"[""CL:0000043""]"	hit_at_5	3	3	7	[]		"[{""cl_id"": ""CL:0000614"", ""label"": ""basophilic myelocyte"", ""score"": 18, ""matched"": [""CD3-"", ""CD33+ (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-"", ""CD16-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD14-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [""CD15-/CD66B- (all alt. conflict)""], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002008"", ""label"": ""CD34-positive, CD38-positive eosinophil progenitor cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD123+ (1 of 2 alt.)"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD193+/FCER1A+/HLA-DR-/CD303- (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD123+ (hi) (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000612"", ""label"": ""eosinophilic myelocyte"", ""score"": 17, ""matched"": [""CD3-"", ""CD33+ (1 of 2 alt.)"", ""CD193+ (1 of 4 alt.)"", ""CD56-"", ""CD19-"", ""CD16-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD14-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [""CD15-/CD66B- (all alt. conflict)""], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000767"", ""label"": ""basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD123+ (hi) (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD123+ (hi) (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 3, ""rank_best"": 3, ""rank_worst"": 7}]"
-provisional/SOULCAP:SC000016/Exact	provisional	SOULCAP:SC000016	Exact	"[""CL:0000043""]"	hit_at_5	1	1	4	[]		"[{""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000767"", ""label"": ""basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000768"", ""label"": ""immature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000770"", ""label"": ""band form basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000942"", ""label"": ""thymic plasmacytoid dendritic cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD45+"", ""CD123+"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD193+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 4}]"
-provisional/SOULCAP:SC000017/Exact	provisional	SOULCAP:SC000017	Exact	"[""CL:0000576""]"	invalid_profile				"[""CL:0000576""]"	invalid expression in Required exclusion: unexpected ')' in group	[]	[]
-provisional/SOULCAP:SC000018/Exact	provisional	SOULCAP:SC000018	Exact	"[""CL:0000860""]"	invalid_profile				[]	invalid expression in Required exclusion: unexpected ')' in group	[]	[]
-provisional/SOULCAP:SC000019/Exact	provisional	SOULCAP:SC000019	Exact	"[""CL:0000875""]"	invalid_profile				[]	invalid expression in Required exclusion: unexpected ')' in group	[]	[]
-provisional/SOULCAP:SC000020/Exact	provisional	SOULCAP:SC000020	Exact	"[""CL:0002393""]"	invalid_profile				[]	invalid expression in Required exclusion: unexpected ')' in group	[]	[]
-provisional/SOULCAP:SC000021/Exact	provisional	SOULCAP:SC000021	Exact	"[""CL:0000775""]"	below_top_5	9	7	16	[]		"[{""cl_id"": ""CL:0000582"", ""label"": ""neutrophilic metamyelocyte"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD19-"", ""CD33+ (1 of 2 alt.)""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001021"", ""label"": ""CD34-positive, CD38-positive common lymphoid progenitor"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD45+"", ""CD19-""], ""gaps"": [""CD123-"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD123-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD123-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD45+"", ""CD19-""], ""gaps"": [""CD123-"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000775"", ""label"": ""neutrophil"", ""score"": 16, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 9, ""rank_best"": 7, ""rank_worst"": 16}]"
-provisional/SOULCAP:SC000022/Exact	provisional	SOULCAP:SC000022	Exact	"[""CL:0000771""]"	hit_at_5	4	2	7	[]		"[{""cl_id"": ""CL:0000612"", ""label"": ""eosinophilic myelocyte"", ""score"": 26, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD16-"", ""CD19-"", ""CD33+ (1 of 2 alt.)""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000041"", ""label"": ""mature eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000580"", ""label"": ""neutrophilic myelocyte"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD16-"", ""CD19-"", ""CD33+ (1 of 2 alt.)""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD193+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000771"", ""label"": ""eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000772"", ""label"": ""immature eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000771"", ""label"": ""eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 2, ""rank_worst"": 7}]"
-provisional/SOULCAP:SC000023/Exact	provisional	SOULCAP:SC000023	Exact	"[""CL:0000236""]"	target_not_in_index				"[""CL:0000236""]"		"[{""cl_id"": ""CL:0000819"", ""label"": ""B-1 B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000820"", ""label"": ""B-1a B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000821"", ""label"": ""B-1b B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000843"", ""label"": ""follicular B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000024/Exact	provisional	SOULCAP:SC000024	Exact	"[""CL:0000946""]"	target_not_in_index				"[""CL:0000946""]"		"[{""cl_id"": ""CL:0000949"", ""label"": ""IgD plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000950"", ""label"": ""IgE plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000980"", ""label"": ""plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000982"", ""label"": ""IgG plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000983"", ""label"": ""IgM plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000025/Exact	provisional	SOULCAP:SC000025	Exact	"[""CL:0000980""]"	hit_at_5	3	1	7	[]		"[{""cl_id"": ""CL:0000949"", ""label"": ""IgD plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000950"", ""label"": ""IgE plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000980"", ""label"": ""plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000982"", ""label"": ""IgG plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000983"", ""label"": ""IgM plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000980"", ""label"": ""plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 3, ""rank_best"": 1, ""rank_worst"": 7}]"
-provisional/SOULCAP:SC000026/Exact	provisional	SOULCAP:SC000026	Exact	"[""CL:0000786""]"	below_top_5	31	31	53	[]		"[{""cl_id"": ""CL:0002047"", ""label"": ""fraction B precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002049"", ""label"": ""fraction C precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002050"", ""label"": ""fraction C' precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002051"", ""label"": ""CD38-high pre-BCR positive cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD19+"", ""CD38:high (hi)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002052"", ""label"": ""fraction D precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 8, ""matched"": [""CD138+"", ""CD20-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD3-"", ""CD56-"", ""CD45+"", ""CD19+"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 31, ""rank_best"": 31, ""rank_worst"": 53}]"
-provisional/SOULCAP:SC000028/Broad	provisional	SOULCAP:SC000028	Broad	"[""CL:0000818""]"	hit_at_5	1	1	6	[]		"[{""cl_id"": ""CL:0000818"", ""label"": ""transitional stage B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000958"", ""label"": ""T1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000959"", ""label"": ""T2 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000960"", ""label"": ""T3 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:high/CD10:high (no axiom on any alt.)"", ""CD24:high"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000818"", ""label"": ""transitional stage B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 6}]"
-provisional/SOULCAP:SC000029/Exact	provisional	SOULCAP:SC000029	Exact	"[""CL:0000785""]"	below_top_5	43	43	45	[]		"[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002055"", ""label"": ""CD38-negative immature B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000785"", ""label"": ""mature B cell"", ""score"": 10, ""matched"": [""CD3-"", ""CD19+ (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20+""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 43, ""rank_best"": 43, ""rank_worst"": 45}]"
-provisional/SOULCAP:SC000030/Exact	provisional	SOULCAP:SC000030	Exact	"[""CL:0000960""]"	below_top_5	20	13	26	[]		"[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10:low (no axiom on any alt.)"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10:low (no axiom on any alt.)"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002054"", ""label"": ""fraction E immature B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+"", ""CD127-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low/CD38-/CD10:low (no axiom on any alt.)"", ""IGD+"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000960"", ""label"": ""T3 B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10:low (no axiom on any alt.)"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 20, ""rank_best"": 13, ""rank_worst"": 26}]"
-provisional/SOULCAP:SC000031/Exact	provisional	SOULCAP:SC000031	Exact	"[""CL:0000788""]"	hit_at_5	5	5	8	[]		"[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000788"", ""label"": ""naive B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000788"", ""label"": ""naive B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 5, ""rank_best"": 5, ""rank_worst"": 8}]"
-provisional/SOULCAP:SC000032/Exact	provisional	SOULCAP:SC000032	Exact	"[""CL:0000981""]"	hit_at_5	5	5	8	[]		"[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 5, ""rank_best"": 5, ""rank_worst"": 8}]"
-provisional/SOULCAP:SC000033/Broad	provisional	SOULCAP:SC000033	Broad	"[""CL:0000981""]"	below_top_5	12	12	19	[]		"[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 23, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002055"", ""label"": ""CD38-negative immature B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+ (dim)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000843"", ""label"": ""follicular B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000959"", ""label"": ""T2 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 12, ""rank_best"": 12, ""rank_worst"": 19}]"
-provisional/SOULCAP:SC000034/Broad	provisional	SOULCAP:SC000034	Broad	"[""CL:0000981""]"	hit_at_5	4	4	6	[]		"[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002103"", ""label"": ""IgG-positive double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 4, ""rank_worst"": 6}]"
-provisional/SOULCAP:SC000035/Broad	provisional	SOULCAP:SC000035	Broad	"[""CL:0000981""]"	hit_at_5	5	5	12	[]		"[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000958"", ""label"": ""T1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD21-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)"", ""IGD-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 5, ""rank_best"": 5, ""rank_worst"": 12}]"
-provisional/SOULCAP:SC000036/Broad	provisional	SOULCAP:SC000036	Broad	"[""CL:0000981""]"	below_top_5	12	12	19	[]		"[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 23, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002055"", ""label"": ""CD38-negative immature B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+ (dim)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000843"", ""label"": ""follicular B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000959"", ""label"": ""T2 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 12, ""rank_best"": 12, ""rank_worst"": 19}]"
-provisional/SOULCAP:SC000037/Exact	provisional	SOULCAP:SC000037	Exact	"[""CL:0000787""]"	below_top_5	39	39	42	[]		"[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002108"", ""label"": ""CD38-negative IgG memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000787"", ""label"": ""memory B cell"", ""score"": 12, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 39, ""rank_best"": 39, ""rank_worst"": 42}]"
-provisional/SOULCAP:SC000039/Exact	provisional	SOULCAP:SC000039	Exact	"[""CL:0000970""]"	below_top_5	13	13	14	[]		"[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002116"", ""label"": ""B220-low CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000970"", ""label"": ""unswitched memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 13, ""rank_best"": 13, ""rank_worst"": 14}]"
-provisional/SOULCAP:SC000040/Exact	provisional	SOULCAP:SC000040	Exact	"[""CL:0000971""]"	below_top_5	33	33	39	[]		"[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002108"", ""label"": ""CD38-negative IgG memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000971"", ""label"": ""IgM memory B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 33, ""rank_best"": 33, ""rank_worst"": 39}]"
-provisional/SOULCAP:SC000041/Exact	provisional	SOULCAP:SC000041	Exact	"[""CL:0000972""]"	below_top_5	14	13	18	[]		"[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002116"", ""label"": ""B220-low CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000972"", ""label"": ""class switched memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 14, ""rank_best"": 13, ""rank_worst"": 18}]"
-provisional/SOULCAP:SC000042/Exact	provisional	SOULCAP:SC000042	Exact	"[""CL:0000973""]"	below_top_5	18	17	19	[]		"[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002118"", ""label"": ""CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002120"", ""label"": ""CD24-positive CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002121"", ""label"": ""CD24-negative CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000973"", ""label"": ""IgA memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 18, ""rank_best"": 17, ""rank_worst"": 19}]"
-provisional/SOULCAP:SC000043/Exact	provisional	SOULCAP:SC000043	Exact	"[""CL:0000979""]"	below_top_5	18	17	22	[]		"[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002118"", ""label"": ""CD38-negative IgG-negative class switched memory B cell"", ""score"": 22, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002120"", ""label"": ""CD24-positive CD38-negative IgG-negative class switched memory B cell"", ""score"": 22, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002121"", ""label"": ""CD24-negative CD38-negative IgG-negative class switched memory B cell"", ""score"": 22, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000979"", ""label"": ""IgG memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 18, ""rank_best"": 17, ""rank_worst"": 22}]"
-provisional/SOULCAP:SC000044/Exact	provisional	SOULCAP:SC000044	Exact	"[""CL:0000948""]"	below_top_5	17	17	19	[]		"[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002118"", ""label"": ""CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002120"", ""label"": ""CD24-positive CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002121"", ""label"": ""CD24-negative CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000948"", ""label"": ""IgE memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 17, ""rank_best"": 17, ""rank_worst"": 19}]"
-provisional/SOULCAP:SC000045/Exact	provisional	SOULCAP:SC000045	Exact	"[""CL:0000084""]"	target_not_in_index				"[""CL:0000084""]"		"[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000046/Broad	provisional	SOULCAP:SC000046	Broad	"[""CL:4052055""]"	below_top_5	34	2	34	[]		"[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 2, ""rank_worst"": 34}]"
-provisional/SOULCAP:SC000047/Broad	provisional	SOULCAP:SC000047	Broad	"[""CL:4052055""]"	below_top_5	42	13	42	[]		"[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002430"", ""label"": ""CD4-intermediate, CD8-positive double-positive thymocyte"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002431"", ""label"": ""CD4-positive, CD8-intermediate double-positive thymocyte"", ""score"": 9, ""matched"": [""CD4+"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD4+"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 42, ""rank_best"": 13, ""rank_worst"": 42}]"
-provisional/SOULCAP:SC000048/Broad	provisional	SOULCAP:SC000048	Broad	"[""CL:4052055""]"	below_top_5	63	39	63	[]		"[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 14, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 14, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 14, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD4-"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 63, ""rank_best"": 39, ""rank_worst"": 63}]"
-provisional/SOULCAP:SC000049/Broad	provisional	SOULCAP:SC000049	Broad	"[""CL:4052055""]"	below_top_5	34	2	34	[]		"[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 2, ""rank_worst"": 34}]"
-provisional/SOULCAP:SC000050/Broad	provisional	SOULCAP:SC000050	Broad	"[""CL:4052055""]"	below_top_5	70	42	70	[]		"[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4+"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 70, ""rank_best"": 42, ""rank_worst"": 70}]"
-provisional/SOULCAP:SC000051/Broad	provisional	SOULCAP:SC000051	Broad	"[""CL:4052055""]"	below_top_5	63	34	63	[]		"[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4-"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 63, ""rank_best"": 34, ""rank_worst"": 63}]"
-provisional/SOULCAP:SC000052/Broad	provisional	SOULCAP:SC000052	Broad	"[""CL:4052055""]"	below_top_5	42	9	42	[]		"[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4+"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 42, ""rank_best"": 9, ""rank_worst"": 42}]"
-provisional/SOULCAP:SC000053/Broad	provisional	SOULCAP:SC000053	Broad	"[""CL:4052055""]"	below_top_5	54	30	54	[]		"[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4-"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 54, ""rank_best"": 30, ""rank_worst"": 54}]"
-provisional/SOULCAP:SC000054/Broad	provisional	SOULCAP:SC000054	Broad	"[""CL:4052055""]"	below_top_5	34	2	34	[]		"[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 2, ""rank_worst"": 34}]"
-provisional/SOULCAP:SC000055/Broad	provisional	SOULCAP:SC000055	Broad	"[""CL:4052055""]"	below_top_5	70	42	70	[]		"[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4+"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 70, ""rank_best"": 42, ""rank_worst"": 70}]"
-provisional/SOULCAP:SC000056/Broad	provisional	SOULCAP:SC000056	Broad	"[""CL:4052055""]"	below_top_5	63	34	63	[]		"[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4-"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 63, ""rank_best"": 34, ""rank_worst"": 63}]"
-provisional/SOULCAP:SC000057/Broad	provisional	SOULCAP:SC000057	Broad	"[""CL:4052055""]"	below_top_5	42	9	42	[]		"[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4+"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 42, ""rank_best"": 9, ""rank_worst"": 42}]"
-provisional/SOULCAP:SC000058/Broad	provisional	SOULCAP:SC000058	Broad	"[""CL:4052055""]"	below_top_5	54	30	54	[]		"[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4-"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 54, ""rank_best"": 30, ""rank_worst"": 54}]"
-provisional/SOULCAP:SC000059/Exact	provisional	SOULCAP:SC000059	Exact	"[""CL:0000814""]"	invalid_profile				[]	invalid expression in Required phenotypic markers: mixed '|' and space in a group	[]	[]
-provisional/SOULCAP:SC000060/Exact	provisional	SOULCAP:SC000060	Exact	"[""CL:0000789""]"	target_not_in_index				"[""CL:0000789""]"		"[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000061/Exact	provisional	SOULCAP:SC000061	Exact	"[""CL:0000798""]"	target_not_in_index				"[""CL:0000798""]"		"[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000062/Broad	provisional	SOULCAP:SC000062	Broad	"[""CL:0000624""]"	below_top_5	9	6	36	[]		"[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000624"", ""label"": ""CD4-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 9, ""rank_best"": 6, ""rank_worst"": 36}]"
-provisional/SOULCAP:SC000063/Broad	provisional	SOULCAP:SC000063	Broad	"[""CL:0000625""]"	hit_at_5	4	4	27	[]		"[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 4, ""rank_worst"": 27}]"
-provisional/SOULCAP:SC000064/Broad	provisional	SOULCAP:SC000064	Broad	"[""CL:0000789""]"	target_not_in_index				"[""CL:0000789""]"		"[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000065/Broad	provisional	SOULCAP:SC000065	Broad	"[""CL:0000084""]"	target_not_in_index				"[""CL:0000084""]"		"[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000066/Exact	provisional	SOULCAP:SC000066	Exact	"[""CL:0000624""]"	below_top_5	9	6	36	[]		"[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000624"", ""label"": ""CD4-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 9, ""rank_best"": 6, ""rank_worst"": 36}]"
-provisional/SOULCAP:SC000067/Exact	provisional	SOULCAP:SC000067	Exact	"[""CL:0000625""]"	hit_at_5	4	4	27	[]		"[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 4, ""rank_worst"": 27}]"
-provisional/SOULCAP:SC000068/Broad	provisional	SOULCAP:SC000068	Broad	"[""CL:0000789""]"	target_not_in_index				"[""CL:0000789""]"		"[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000069/Broad	provisional	SOULCAP:SC000069	Broad	"[""CL:0000789""]"	target_not_in_index				"[""CL:0000789""]"		"[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000070/Broad	provisional	SOULCAP:SC000070	Broad	"[""CL:0000798""]"	target_not_in_index				"[""CL:0000798""]"		"[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000071/Broad	provisional	SOULCAP:SC000071	Broad	"[""CL:0000798""]"	target_not_in_index				"[""CL:0000798""]"		"[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000072/Broad	provisional	SOULCAP:SC000072	Broad	"[""CL:0000798""]"	target_not_in_index				"[""CL:0000798""]"		"[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000073/Exact	provisional	SOULCAP:SC000073	Exact	"[""CL:0000803""]"	hit_at_5	1	1	6	[]		"[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 6}]"
-provisional/SOULCAP:SC000074/Exact	provisional	SOULCAP:SC000074	Exact	"[""CL:0000940""]"	invalid_profile				"[""CL:0000940""]"	invalid expression in Required phenotypic markers: mixed '|' and space in a group	[]	[]
-provisional/SOULCAP:SC000082/Exact	provisional	SOULCAP:SC000082	Exact	"[""CL:0000904""]"	below_top_5	238	238	243	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000904"", ""label"": ""central memory CD4-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 238, ""rank_best"": 238, ""rank_worst"": 243}]"
-provisional/SOULCAP:SC000085/Exact	provisional	SOULCAP:SC000085	Exact	"[""CL:0000907""]"	below_top_5	239	238	243	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000907"", ""label"": ""central memory CD8-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 239, ""rank_best"": 238, ""rank_worst"": 243}]"
-provisional/SOULCAP:SC000087/Exact	provisional	SOULCAP:SC000087	Exact	"[""CL:0000898""]"	below_top_5	252	243	261	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000898"", ""label"": ""naive T cell"", ""score"": 2, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 252, ""rank_best"": 243, ""rank_worst"": 261}]"
-provisional/SOULCAP:SC000089/Exact	provisional	SOULCAP:SC000089	Exact	"[""CL:0000895""]"	below_top_5	238	238	242	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 238, ""rank_best"": 238, ""rank_worst"": 242}]"
-provisional/SOULCAP:SC000092/Exact	provisional	SOULCAP:SC000092	Exact	"[""CL:0000900""]"	below_top_5	253	242	258	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 2, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 253, ""rank_best"": 242, ""rank_worst"": 258}]"
-provisional/SOULCAP:SC000096/Exact	provisional	SOULCAP:SC000096	Exact	"[""CL:0000905""]"	below_top_5	238	238	247	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 12, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000905"", ""label"": ""effector memory CD4-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 238, ""rank_best"": 238, ""rank_worst"": 247}]"
-provisional/SOULCAP:SC000099/Exact	provisional	SOULCAP:SC000099	Exact	"[""CL:0000913""]"	below_top_5	239	238	247	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 12, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000913"", ""label"": ""effector memory CD8-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 239, ""rank_best"": 238, ""rank_worst"": 247}]"
-provisional/SOULCAP:SC000103/Exact	provisional	SOULCAP:SC000103	Exact	"[""CL:4030002""]"	target_not_in_index				"[""CL:4030002""]"		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
diff --git a/reports/regression-triage/regression_triage.json b/reports/regression-triage/regression_triage.json
deleted file mode 100644
index 0369b3a..0000000
--- a/reports/regression-triage/regression_triage.json
+++ /dev/null
@@ -1,216298 +0,0 @@
-{
-  "schema_version": 1,
-  "generated_utc": "2026-09-18T20:51:29.086097+00:00",
-  "inputs": {
-    "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44",
-    "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8",
-    "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e",
-    "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c",
-    "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706",
-    "marker_map": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7",
-    "marker_policy": "317578b4b7fb1a9837b9a61fa85c2dc1ea6469eab4404b0435476ba4a12a1f84"
-  },
-  "code_hashes": {
-    "cl_match.py": "4d447e860e8c500196b2859549b91dac9549afeaee236eedd5d63049ca7f7cec",
-    "phenotype.py": "6d3e7e59b884365fa48596fe1365b8630053b70a6259bb0e8f42413a55a9514a",
-    "marker_syntax.py": "e40620b1d804eec3c1f05251716092abd7f5a273e11ba91ce61a3345b1872ade",
-    "registry.py": "a225ca650e0278378566bf7134b3d8daa33dabee0c61c3d479d8affddf7a25fd",
-    "evaluation.py": "69dd3abd6c1bbf5a5ae453428269179a5cca8b991c1338bb51097dadf06555c5",
-    "audit.py": "4d2bfeff9583efd80c37d8fef51e06abb887410f4b9d88ce9b68bceace8bc9bb",
-    "candidate_index.py": "d4c58041cb4c4a4033d1457ae9f04d2e4d814a2d80469dd7aced2e696539e9a6",
-    "marker_resolution.py": "17feb8779da5a3d429c9d8326d26195cb66bb25cebf9cd005c79410d99efe050",
-    "regression_triage.py": "699b520311058f0fbd376cf1083e6c1a542608ed176178add35ba21b33d2d361"
-  },
-  "factors": {
-    "A": "Add alias/allowed-PRO token evidence present in the enhanced index but absent in legacy.",
-    "P": "Remove legacy token evidence excluded by stricter policies, alias conflicts, synonym scope, or exact-PRO checks.",
-    "D": "Enable production semantic-clause deduplication using the fixed enhanced canonical alias map."
-  },
-  "mode_order": "APD (0 disabled, 1 enabled)",
-  "candidate_count": 826,
-  "endpoint_checks": "passed",
-  "summary": {
-    "rank_improvements": 5,
-    "rank_regressions": 32,
-    "unchanged_ranks": 43,
-    "lost_top5": 3,
-    "gained_top5": 0,
-    "cases_sensitive_to_factor": {
-      "A": 0,
-      "P": 37,
-      "D": 0
-    }
-  },
-  "limitations": [
-    "Provisional targets are not biological ground truth; this report does not validate them.",
-    "A/P separate added and removed index evidence, not independent biological mechanisms. Their identities are fixed by current policy.",
-    "D uses the same canonical map in every diagnostic run. Intermediate combinations are not supported production settings.",
-    "Tie bounds describe sensitivity to input order. Factor effects may interact; there is no unique additive causal attribution.",
-    "All cohort cases remain in denominators. Invalid profiles and targets absent from the fixed index are not silently excluded.",
-    "No lexical expansion, biological policy edits, scoring-weight changes, or network requests."
-  ],
-  "metrics": {
-    "000": {
-      "reviewed": {
-        "cases": 0,
-        "mrr": null,
-        "statuses": {},
-        "cases_with_missing_targets": 0,
-        "top1_disqualified": 0,
-        "hit_at_1": null,
-        "hit_at_1_optimistic": null,
-        "hit_at_1_pessimistic": null,
-        "hit_at_3": null,
-        "hit_at_3_optimistic": null,
-        "hit_at_3_pessimistic": null,
-        "hit_at_5": null,
-        "hit_at_5_optimistic": null,
-        "hit_at_5_pessimistic": null
-      },
-      "provisional": {
-        "cases": 80,
-        "mrr": 0.1524095320342756,
-        "statuses": {
-          "below_top_5": 42,
-          "hit_at_5": 19,
-          "invalid_profile": 6,
-          "target_not_in_index": 13
-        },
-        "cases_with_missing_targets": 15,
-        "top1_disqualified": 0,
-        "hit_at_1": 0.0875,
-        "hit_at_1_optimistic": 0.125,
-        "hit_at_1_pessimistic": 0.0,
-        "hit_at_3": 0.15,
-        "hit_at_3_optimistic": 0.2,
-        "hit_at_3_pessimistic": 0.0875,
-        "hit_at_5": 0.2375,
-        "hit_at_5_optimistic": 0.275,
-        "hit_at_5_pessimistic": 0.1
-      }
-    },
-    "001": {
-      "reviewed": {
-        "cases": 0,
-        "mrr": null,
-        "statuses": {},
-        "cases_with_missing_targets": 0,
-        "top1_disqualified": 0,
-        "hit_at_1": null,
-        "hit_at_1_optimistic": null,
-        "hit_at_1_pessimistic": null,
-        "hit_at_3": null,
-        "hit_at_3_optimistic": null,
-        "hit_at_3_pessimistic": null,
-        "hit_at_5": null,
-        "hit_at_5_optimistic": null,
-        "hit_at_5_pessimistic": null
-      },
-      "provisional": {
-        "cases": 80,
-        "mrr": 0.1524095320342756,
-        "statuses": {
-          "below_top_5": 42,
-          "hit_at_5": 19,
-          "invalid_profile": 6,
-          "target_not_in_index": 13
-        },
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-        },
-        {
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-        }
-      ],
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-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "NK",
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-          ],
-          "status": "hit_at_5",
-          "note": ""
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-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000003/Exact",
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-                "CD45+",
-                "CD127-",
-                "CD16+",
-                "CD57-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            {
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-                "CD19-",
-                "CD56+"
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-                "CD45+",
-                "CD127-",
-                "CD16+",
-                "CD57-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
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-              "disqualified": false,
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-              "lexical_evidence": null
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-          ],
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-              "cl_id": "CL:0000939",
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-                "CD3-",
-                "CD45+",
-                "CD127-",
-                "CD16+",
-                "CD57-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "rank_worst": 4
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-          "note": ""
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-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000004",
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-                "CD3-",
-                "CD45+",
-                "CD127-",
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-                "CD57-",
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-              "lexical_evidence": null
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-            {
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-                "CD45+",
-                "CD127-",
-                "CD16+",
-                "CD57-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-            {
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-                "CD56+ (hi)"
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-                "CD3-",
-                "CD45+",
-                "CD127-",
-                "CD16+",
-                "CD57-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
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-            {
-              "cl_id": "CL:0001073",
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-                "CD19-",
-                "CD56+"
-              ],
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-                "CD3-",
-                "CD45+",
-                "CD127-",
-                "CD16+",
-                "CD57-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
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-              "disqualified": false,
-              "candidate_sources": [
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-              "lexical_evidence": null
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-                "CD45+",
-                "CD127-",
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-                "CD57-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-              "rank": 3,
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-              "rank_worst": 4
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-          ],
-          "status": "hit_at_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000005/Broad",
-      "subject_id": "SOULCAP:SC000005",
-      "label": "Natural Killer Cell 3",
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-      "match_type": "Broad",
-      "targets": [
-        "CL:0000939"
-      ],
-      "outcome": "regressed",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
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-        "Parent": "CTNK",
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-        "CL Mapping Notes": ""
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-              "cl_id": "CL:0000992",
-              "label": "immature CD11c-low plasmacytoid dendritic cell",
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-                "CD3-",
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-                "CD45+",
-                "CD56-",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
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-                "CD127+",
-                "CD117-",
-                "CD294-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-            },
-            {
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-              "label": "mature CD11c-low plasmacytoid dendritic cell",
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-                "CD56-",
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-              ],
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-                "CD127+",
-                "CD117-",
-                "CD294-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001057",
-              "label": "myeloid dendritic cell, human",
-              "score": 23,
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-                "CD3-",
-                "CD19-",
-                "CD56-",
-                "CD123-"
-              ],
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-                "CD127+",
-                "CD117-",
-                "CD294-",
-                "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002089",
-              "label": "group 2 innate lymphoid cell, mouse",
-              "score": 23,
-              "matched": [
-                "CD33- (1 of 3 alt.)",
-                "CD3-",
-                "CD19-",
-                "CD127+",
-                "CD56-"
-              ],
-              "gaps": [
-                "CD34-",
-                "CD45+",
-                "CD117-",
-                "CD294-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:0001067",
-              "label": "group 1 innate lymphoid cell",
-              "score": 11,
-              "matched": [
-                "CD3-",
-                "CD19-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD34-",
-                "CD45+",
-                "CD127+",
-                "CD56-",
-                "CD117-",
-                "CD294-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 161,
-              "rank_best": 150,
-              "rank_worst": 165
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        },
-        "110": {
-          "case_id": "provisional/SOULCAP:SC000008/Exact",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000008",
-          "match_type": "Exact",
-          "targets": [
-            "CL:0001067"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 171,
-          "rank_best": 164,
-          "rank_worst": 175,
-          "missing_targets": [],
-          "candidates": [
-            {
-              "cl_id": "CL:0000989",
-              "label": "CD11c-low plasmacytoid dendritic cell",
-              "score": 19,
-              "matched": [
-                "CD34-",
-                "CD19-",
-                "CD45+",
-                "CD56-",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD3-",
-                "CD127+",
-                "CD117-",
-                "CD294-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000992",
-              "label": "immature CD11c-low plasmacytoid dendritic cell",
-              "score": 19,
-              "matched": [
-                "CD34-",
-                "CD19-",
-                "CD45+",
-                "CD56-",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD3-",
-                "CD127+",
-                "CD117-",
-                "CD294-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000993",
-              "label": "mature CD11c-low plasmacytoid dendritic cell",
-              "score": 19,
-              "matched": [
-                "CD34-",
-                "CD19-",
-                "CD45+",
-                "CD56-",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD3-",
-                "CD127+",
-                "CD117-",
-                "CD294-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001057",
-              "label": "myeloid dendritic cell, human",
-              "score": 19,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD34-",
-                "CD19-",
-                "CD56-",
-                "CD123-"
-              ],
-              "gaps": [
-                "CD3-",
-                "CD45+",
-                "CD3-",
-                "CD127+",
-                "CD117-",
-                "CD294-",
-                "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002455",
-              "label": "CD8-alpha-negative plasmacytoid dendritic cell",
-              "score": 19,
-              "matched": [
-                "CD34-",
-                "CD19-",
-                "CD45+",
-                "CD56-",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD3-",
-                "CD127+",
-                "CD117-",
-                "CD294-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:0001067",
-              "label": "group 1 innate lymphoid cell",
-              "score": 7,
-              "matched": [
-                "CD19-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD34-",
-                "CD3-",
-                "CD45+",
-                "CD3-",
-                "CD127+",
-                "CD56-",
-                "CD117-",
-                "CD294-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 171,
-              "rank_best": 164,
-              "rank_worst": 175
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        },
-        "111": {
-          "case_id": "provisional/SOULCAP:SC000008/Exact",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000008",
-          "match_type": "Exact",
-          "targets": [
-            "CL:0001067"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 171,
-          "rank_best": 164,
-          "rank_worst": 175,
-          "missing_targets": [],
-          "candidates": [
-            {
-              "cl_id": "CL:0000989",
-              "label": "CD11c-low plasmacytoid dendritic cell",
-              "score": 19,
-              "matched": [
-                "CD34-",
-                "CD19-",
-                "CD45+",
-                "CD56-",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD127+",
-                "CD117-",
-                "CD294-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000992",
-              "label": "immature CD11c-low plasmacytoid dendritic cell",
-              "score": 19,
-              "matched": [
-                "CD34-",
-                "CD19-",
-                "CD45+",
-                "CD56-",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD127+",
-                "CD117-",
-                "CD294-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000993",
-              "label": "mature CD11c-low plasmacytoid dendritic cell",
-              "score": 19,
-              "matched": [
-                "CD34-",
-                "CD19-",
-                "CD45+",
-                "CD56-",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD127+",
-                "CD117-",
-                "CD294-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
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-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001057",
-              "label": "myeloid dendritic cell, human",
-              "score": 19,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD34-",
-                "CD19-",
-                "CD56-",
-                "CD123-"
-              ],
-              "gaps": [
-                "CD3-",
-                "CD45+",
-                "CD127+",
-                "CD117-",
-                "CD294-",
-                "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002455",
-              "label": "CD8-alpha-negative plasmacytoid dendritic cell",
-              "score": 19,
-              "matched": [
-                "CD34-",
-                "CD19-",
-                "CD45+",
-                "CD56-",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD127+",
-                "CD117-",
-                "CD294-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:0001067",
-              "label": "group 1 innate lymphoid cell",
-              "score": 7,
-              "matched": [
-                "CD19-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD34-",
-                "CD3-",
-                "CD45+",
-                "CD127+",
-                "CD56-",
-                "CD117-",
-                "CD294-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 171,
-              "rank_best": 164,
-              "rank_worst": 175
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000009/Exact",
-      "subject_id": "SOULCAP:SC000009",
-      "label": "Innate Lymphoid Cell 2",
-      "cohort": "provisional",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0001081"
-      ],
-      "outcome": "improved",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 26,
-        "001": 26,
-        "010": 25,
-        "011": 25,
-        "100": 26,
-        "101": 26,
-        "110": 25,
-        "111": 25
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": 26,
-          "rank_after": 26,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "000",
-          "after": "010",
-          "rank_before": 26,
-          "rank_after": 25,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "000",
-          "after": "001",
-          "rank_before": 26,
-          "rank_after": 26,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "001",
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-          "rank_before": 26,
-          "rank_after": 26,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "001",
-          "after": "011",
-          "rank_before": 26,
-          "rank_after": 25,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "010",
-          "after": "110",
-          "rank_before": 25,
-          "rank_after": 25,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "010",
-          "after": "011",
-          "rank_before": 25,
-          "rank_after": 25,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "011",
-          "after": "111",
-          "rank_before": 25,
-          "rank_after": 25,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "100",
-          "after": "110",
-          "rank_before": 26,
-          "rank_after": 25,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "100",
-          "after": "101",
-          "rank_before": 26,
-          "rank_after": 26,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "101",
-          "after": "111",
-          "rank_before": 26,
-          "rank_after": 25,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "110",
-          "after": "111",
-          "rank_before": 25,
-          "rank_after": 25,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "no",
-        "WB or PBMC": "",
-        "Parent": "ILC",
-        "Abbreviation": "ILC2",
-        "Full Name": "Innate Lymphoid Cell 2",
-        "synonym": "",
-        "Type of Match": "Surface Only (SO)",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD34- CD3- CD19- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD123-",
-        "Required phenotypic markers": "live/ CD45+ CD3- CD127+ CD56- CD117lo/- CD294+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000989",
-          "label": "CD11c-low plasmacytoid dendritic cell",
-          "expected_target": false,
-          "before": {
-            "cl_id": "CL:0000989",
-            "label": "CD11c-low plasmacytoid dendritic cell",
-            "score": 27,
-            "matched": [
-              "CD34-",
-              "CD3-",
-              "CD19-",
-              "CD45+",
-              "CD3-",
-              "CD56-",
-              "CD11C:not:high (dim) (1 of 2 alt.)"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD127+",
-              "CD117:low/CD117- (no axiom on any alt.)",
-              "CD294+",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 2
-          },
-          "after": {
-            "cl_id": "CL:0000989",
-            "label": "CD11c-low plasmacytoid dendritic cell",
-            "score": 19,
-            "matched": [
-              "CD34-",
-              "CD19-",
-              "CD45+",
-              "CD56-",
-              "CD11C:not:high (dim) (1 of 2 alt.)"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD3-",
-              "CD127+",
-              "CD117:low/CD117- (no axiom on any alt.)",
-              "CD294+",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 2
-          },
-          "token_changes": [
-            {
-              "token": "CD45R",
-              "level": "positive",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-                "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)"
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-            }
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-              "score": 19,
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD34-",
-                "CD45+",
-                "CD56-",
-                "CD117:low/CD117- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
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-              "rank_worst": 32
-            }
-          ],
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-          "note": ""
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-                "CD3-",
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-                "CD56-",
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-                "CD3-",
-                "CD127+",
-                "CD117:low/CD117- (no axiom on any alt.)",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD117:low/CD117- (no axiom on any alt.)",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD56-",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
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-                "CD3-",
-                "CD3-",
-                "CD127+",
-                "CD117:low/CD117- (no axiom on any alt.)",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-            },
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-              "label": "myeloid dendritic cell, human",
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-                "CD45+",
-                "CD3-",
-                "CD127+",
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-                "CD294+",
-                "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)"
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-                "CD34-",
-                "CD3-",
-                "CD45+",
-                "CD3-",
-                "CD56-",
-                "CD117:low/CD117- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
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-              "rank": 25,
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-              "rank_worst": 32
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-          ],
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-          "note": ""
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-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000009",
-          "match_type": "Exact",
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-          "evidence_reference": "mappings/curated_mappings.tsv",
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-                "CD56-",
-                "CD117:low (dim) (1 of 2 alt.)"
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-                "CD3-",
-                "CD127+",
-                "CD294+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD56-",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
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-                "CD3-",
-                "CD127+",
-                "CD117:low/CD117- (no axiom on any alt.)",
-                "CD294+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
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-              "disqualified": false,
-              "candidate_sources": [
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-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000992",
-              "label": "immature CD11c-low plasmacytoid dendritic cell",
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-                "CD19-",
-                "CD45+",
-                "CD56-",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD127+",
-                "CD117:low/CD117- (no axiom on any alt.)",
-                "CD294+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              "lexical_evidence": null
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-            {
-              "cl_id": "CL:0000993",
-              "label": "mature CD11c-low plasmacytoid dendritic cell",
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-                "CD19-",
-                "CD45+",
-                "CD56-",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
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-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD127+",
-                "CD117:low/CD117- (no axiom on any alt.)",
-                "CD294+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
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-              "disqualified": false,
-              "candidate_sources": [
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-              "lexical_evidence": null
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-            {
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-              "label": "myeloid dendritic cell, human",
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-                "CD34-",
-                "CD19-",
-                "CD56-",
-                "CD123-"
-              ],
-              "gaps": [
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-                "CD45+",
-                "CD127+",
-                "CD117:low/CD117- (no axiom on any alt.)",
-                "CD294+",
-                "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)"
-              ],
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-              "disqualified": false,
-              "candidate_sources": [
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-          ],
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-              "cl_id": "CL:0001081",
-              "label": "group 2 innate lymphoid cell, human",
-              "score": 15,
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-                "CD19-",
-                "CD127+",
-                "CD294+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD34-",
-                "CD3-",
-                "CD45+",
-                "CD56-",
-                "CD117:low/CD117- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD123-"
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-              ],
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-              "rank": 25,
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-              "rank_worst": 32
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-          ],
-          "status": "below_top_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000010/Exact",
-      "subject_id": "SOULCAP:SC000010",
-      "label": "Innate Lymphoid Cell 3",
-      "cohort": "provisional",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0001078"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 118,
-        "001": 118,
-        "010": 118,
-        "011": 118,
-        "100": 118,
-        "101": 118,
-        "110": 118,
-        "111": 118
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": 118,
-          "rank_after": 118,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
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-          "rank_after": 118,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "000",
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-          "rank_after": 118,
-          "top5_delta": 0
-        },
-        {
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-          "before": "001",
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-          "rank_after": 118,
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-        {
-          "factor": "P",
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-          "rank_after": 118,
-          "top5_delta": 0
-        },
-        {
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-          "rank_before": 118,
-          "rank_after": 118,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "010",
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-          "rank_after": 118,
-          "top5_delta": 0
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-        {
-          "factor": "A",
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-          "rank_before": 118,
-          "rank_after": 118,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "100",
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-          "rank_before": 118,
-          "rank_after": 118,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "100",
-          "after": "101",
-          "rank_before": 118,
-          "rank_after": 118,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "101",
-          "after": "111",
-          "rank_before": 118,
-          "rank_after": 118,
-          "top5_delta": 0
-        },
-        {
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-          "before": "110",
-          "after": "111",
-          "rank_before": 118,
-          "rank_after": 118,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "no",
-        "WB or PBMC": "",
-        "Parent": "ILC",
-        "Abbreviation": "ILC3",
-        "Full Name": "Innate Lymphoid Cell 3",
-        "synonym": "",
-        "Type of Match": "Surface Only (SO)",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD34- CD3- CD19- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD123-",
-        "Required phenotypic markers": "live/ CD45+ CD3- CD127+ CD56+/- CD117+ CD294- ",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "No ILC3b in circulation, add CD336 for tissue",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000989",
-          "label": "CD11c-low plasmacytoid dendritic cell",
-          "expected_target": false,
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-            "label": "CD11c-low plasmacytoid dendritic cell",
-            "score": 27,
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-              "CD3-",
-              "CD19-",
-              "CD45+",
-              "CD3-",
-              "CD56- (1 of 2 alt.)",
-              "CD11C:not:high (dim) (1 of 2 alt.)"
-            ],
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD127+",
-              "CD117+",
-              "CD294-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD123-"
-            ],
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-              "CD19-",
-              "CD45+",
-              "CD56- (1 of 2 alt.)",
-              "CD11C:not:high (dim) (1 of 2 alt.)"
-            ],
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD3-",
-              "CD127+",
-              "CD117+",
-              "CD294-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
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-            ],
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-            "rank": 3
-          },
-          "token_changes": [
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-              "token": "CD45R",
-              "level": "positive",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
-                }
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-              "cell_label": "CD11c-low plasmacytoid dendritic cell",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
-              "legacy_tokens": [
-                "CD3",
-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
-              ],
-              "resolution_paths": [
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-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            },
-            {
-              "cell": "CL:0000989",
-              "cell_label": "CD11c-low plasmacytoid dendritic cell",
-              "relation": "RO:0002104",
-              "relation_label": "has plasma membrane part",
-              "sense": "positive",
-              "asserted": "True",
-              "pr": "PR:000001014",
-              "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RABC",
-              "cd_synonym": "CD45R (related); CD45RABC (label)",
-              "uniprot_human": "UniProtKB:P08575-3",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "HGNC:9666",
-              "hgnc_symbol": "PTPRC",
-              "legacy_tokens": [
-                "CD45R",
-                "CD45RABC"
-              ],
-              "enhanced_tokens": [
-                "CD45RABC"
-              ],
-              "resolution_paths": [
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-                  "via": "exact_alias",
-                  "source_token": "CD45RABC",
-                  "tokens": [
-                    "CD45RABC"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000992",
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-                "CD45+",
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-                "CD3-",
-                "CD45+",
-                "CD3-",
-                "CD56:low/CD56- (no axiom on any alt.)",
-                "CD117+",
-                "CD294-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD3-",
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-                "CD117+",
-                "CD294-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-    {
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-      "label": "Conventional Dendritic Cell",
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-      "match_type": "Exact",
-      "targets": [
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-      "outcome": "regressed",
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-      "ranks": {
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-        "Parent": "",
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-                "CD1C-",
-                "CD141+",
-                "CD3-",
-                "CD127-",
-                "CD172A-",
-                "FCER1A-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002394",
-              "label": "CD141-positive myeloid dendritic cell",
-              "score": 22,
-              "matched": [
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-                "CD123:not:high (1 of 2 alt.)",
-                "CD11C:high (hi)",
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-                "CD19-",
-                "CD56-"
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-                "CD14-",
-                "CD16-",
-                "CD45+",
-                "CD33:high/CD64+ (no axiom on any alt.)",
-                "HLA-DR+",
-                "CD1C-",
-                "CD3-",
-                "CD127-",
-                "CD172A-",
-                "FCER1A-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 2,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002000",
-              "label": "Kit-positive erythroid progenitor cell",
-              "score": 19,
-              "matched": [
-                "CD123:not:high (1 of 2 alt.)",
-                "CD123:not:high (1 of 2 alt.)",
-                "CD14-",
-                "CD19-",
-                "CD56-",
-                "CD127-"
-              ],
-              "gaps": [
-                "CD16-",
-                "CD45+",
-                "CD33:high/CD64+ (no axiom on any alt.)",
-                "CD11C:high",
-                "HLA-DR+",
-                "CD1C-",
-                "CD141+",
-                "CD3-",
-                "CD172A-",
-                "FCER1A-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000782",
-              "label": "myeloid dendritic cell",
-              "score": 18,
-              "matched": [
-                "CD123:not:high (1 of 2 alt.)",
-                "CD123:not:high (1 of 2 alt.)",
-                "CD11C:high (hi)",
-                "CD19-",
-                "CD56-"
-              ],
-              "gaps": [
-                "CD14-",
-                "CD16-",
-                "CD45+",
-                "CD33:high/CD64+ (no axiom on any alt.)",
-                "HLA-DR+",
-                "CD1C-",
-                "CD141+",
-                "CD3-",
-                "CD127-",
-                "CD172A-",
-                "FCER1A-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 2,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002532",
-              "label": "CD16-positive myeloid dendritic cell",
-              "score": 18,
-              "matched": [
-                "CD123:not:high (1 of 2 alt.)",
-                "CD123:not:high (1 of 2 alt.)",
-                "CD11C:high (hi)",
-                "CD19-",
-                "CD56-"
-              ],
-              "gaps": [
-                "CD14-",
-                "CD16-",
-                "CD45+",
-                "CD33:high/CD64+ (no axiom on any alt.)",
-                "HLA-DR+",
-                "CD1C-",
-                "CD141+",
-                "CD3-",
-                "CD127-",
-                "CD172A-",
-                "FCER1A-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 2,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:0002394",
-              "label": "CD141-positive myeloid dendritic cell",
-              "score": 22,
-              "matched": [
-                "CD123:not:high (1 of 2 alt.)",
-                "CD123:not:high (1 of 2 alt.)",
-                "CD11C:high (hi)",
-                "CD141+",
-                "CD19-",
-                "CD56-"
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-              "gaps": [
-                "CD14-",
-                "CD16-",
-                "CD45+",
-                "CD33:high/CD64+ (no axiom on any alt.)",
-                "HLA-DR+",
-                "CD1C-",
-                "CD3-",
-                "CD127-",
-                "CD172A-",
-                "FCER1A-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 2,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 2,
-              "rank_best": 1,
-              "rank_worst": 2
-            }
-          ],
-          "status": "hit_at_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000013/Exact",
-      "subject_id": "SOULCAP:SC000013",
-      "label": "Conventional Dendritic Cell 2",
-      "cohort": "provisional",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0002399"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 2,
-        "001": 2,
-        "010": 2,
-        "011": 2,
-        "100": 2,
-        "101": 2,
-        "110": 2,
-        "111": 2
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": 2,
-          "rank_after": 2,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "000",
-          "after": "010",
-          "rank_before": 2,
-          "rank_after": 2,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "000",
-          "after": "001",
-          "rank_before": 2,
-          "rank_after": 2,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "001",
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-          "rank_before": 2,
-          "rank_after": 2,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "001",
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-          "rank_before": 2,
-          "rank_after": 2,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "010",
-          "after": "110",
-          "rank_before": 2,
-          "rank_after": 2,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "010",
-          "after": "011",
-          "rank_before": 2,
-          "rank_after": 2,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "011",
-          "after": "111",
-          "rank_before": 2,
-          "rank_after": 2,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "100",
-          "after": "110",
-          "rank_before": 2,
-          "rank_after": 2,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "100",
-          "after": "101",
-          "rank_before": 2,
-          "rank_after": 2,
-          "top5_delta": 0
-        },
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-          "before": "101",
-          "after": "111",
-          "rank_before": 2,
-          "rank_after": 2,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "110",
-          "after": "111",
-          "rank_before": 2,
-          "rank_after": 2,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "DCM",
-        "Abbreviation": "cDC2",
-        "Full Name": "Conventional Dendritic Cell 2",
-        "synonym": "mDC2",
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-        "OLS CL identifier": "",
-        "Required exclusion": "([CD123hi]-|CD193-) ([CD123hi]-|CD303-) CD14- CD16-",
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-        "Required phenotypic markers": "live/ CD45+ (CD33hi|CD64+) CD11chi HLA-DR+ CD1c+ CD141lo/-",
-        "Ideal phenotypic markers": "CD172a+ FceR1a+/-",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
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-          "label": "myeloid dendritic cell",
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-              "CD56-"
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-              "CD16-",
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-              "CD33:high/CD64+ (no axiom on any alt.)",
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-              "FCER1A:low/FCER1A- (no axiom on any alt.)"
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-              "FCER1A:low/FCER1A- (no axiom on any alt.)"
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-        "Nomenclature Notes": "",
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-          "targets": [
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-            },
-            {
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-                "CD19-"
-              ],
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-                "CD33:low/CD33+/CD123:high (no axiom on any alt.)",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD16-"
-              ],
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-            },
-            {
-              "cl_id": "CL:0002008",
-              "label": "CD34-positive, CD38-positive eosinophil progenitor cell",
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-                "CD56-",
-                "CD19-",
-                "CD14-"
-              ],
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-                "CD33:low/CD33+/CD123:high (no axiom on any alt.)",
-                "CD193-/FCER1A-/CD303+ (no axiom on any alt.)",
-                "CD127-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
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-              "candidate_sources": [
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-            },
-            {
-              "cl_id": "CL:0002029",
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-                "CD56-",
-                "CD19-",
-                "CD14-"
-              ],
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-                "CD33:low/CD33+/CD123:high (no axiom on any alt.)",
-                "CD193-/FCER1A- (dim)/CD303+ (no axiom on any alt.)",
-                "CD127-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
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-              ],
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-            }
-          ],
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-              "cl_id": "CL:0001058",
-              "label": "plasmacytoid dendritic cell, human",
-              "score": 8,
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-                "CD19-",
-                "CD14-"
-              ],
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-                "CD3-",
-                "CD45+",
-                "CD33:low/CD33+/CD123:high (no axiom on any alt.)",
-                "CD193-/FCER1A-/CD303+ (no axiom on any alt.)",
-                "CD127-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
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-              ],
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-              "rank_worst": 44
-            }
-          ],
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-        },
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-          "case_id": "provisional/SOULCAP:SC000014/Exact",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000014",
-          "match_type": "Exact",
-          "targets": [
-            "CL:0001058"
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-                "CD303+ (1 of 3 alt.)",
-                "CD56-",
-                "CD19-"
-              ],
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-                "CD3-",
-                "CD33:low/CD33+/CD123:high (no axiom on any alt.)",
-                "CD127-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD14-",
-                "CD16-"
-              ],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000994",
-              "label": "immature CD11c-negative plasmacytoid dendritic cell",
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-                "CD45+",
-                "CD303+ (1 of 3 alt.)",
-                "CD56-",
-                "CD19-"
-              ],
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-                "CD3-",
-                "CD33:low/CD33+/CD123:high (no axiom on any alt.)",
-                "CD127-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD14-",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000996",
-              "label": "mature CD11c-negative plasmacytoid dendritic cell",
-              "score": 14,
-              "matched": [
-                "CD45+",
-                "CD303+ (1 of 3 alt.)",
-                "CD56-",
-                "CD19-"
-              ],
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-                "CD3-",
-                "CD33:low/CD33+/CD123:high (no axiom on any alt.)",
-                "CD127-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD14-",
-                "CD16-"
-              ],
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-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002008",
-              "label": "CD34-positive, CD38-positive eosinophil progenitor cell",
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-              "matched": [
-                "CD45+",
-                "CD56-",
-                "CD19-",
-                "CD14-"
-              ],
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-                "CD3-",
-                "CD33:low/CD33+/CD123:high (no axiom on any alt.)",
-                "CD193-/FCER1A-/CD303+ (no axiom on any alt.)",
-                "CD127-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
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-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002029",
-              "label": "Fc-epsilon RIalpha-low mast cell progenitor",
-              "score": 11,
-              "matched": [
-                "CD45+",
-                "CD56-",
-                "CD19-",
-                "CD14-"
-              ],
-              "gaps": [
-                "CD3-",
-                "CD33:low/CD33+/CD123:high (no axiom on any alt.)",
-                "CD193-/FCER1A- (dim)/CD303+ (no axiom on any alt.)",
-                "CD127-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
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-              "disqualified": false,
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-              ],
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-          ],
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-              "cl_id": "CL:0001058",
-              "label": "plasmacytoid dendritic cell, human",
-              "score": 8,
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-                "CD56-",
-                "CD19-",
-                "CD14-"
-              ],
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-                "CD3-",
-                "CD45+",
-                "CD33:low/CD33+/CD123:high (no axiom on any alt.)",
-                "CD193-/FCER1A-/CD303+ (no axiom on any alt.)",
-                "CD127-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-          ],
-          "status": "below_top_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000015/Exact",
-      "subject_id": "SOULCAP:SC000015",
-      "label": "Basophil",
-      "cohort": "provisional",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000043"
-      ],
-      "outcome": "improved",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
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-        "001": 3,
-        "010": 2,
-        "011": 2,
-        "100": 3,
-        "101": 3,
-        "110": 2,
-        "111": 2
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-          "factor": "A",
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-          "top5_delta": 0
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-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "PBMC",
-        "Parent": "",
-        "Abbreviation": "Basophil",
-        "Full Name": "Basophil",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "CD3-",
-        "Ideal exclusion": "CD56- CD19- CD127- (CD15-|CD66b-) CD14- CD16- ",
-        "Required phenotypic markers": "live/ CD45+ (CD33+|CD123+) (CD193+|FceR1a+|HLA-DR-|CD303-)",
-        "Ideal phenotypic markers": "FceR1a+ HLA-DR-  ",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
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-          "label": "mature basophil",
-          "expected_target": true,
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-              "level": "positive",
-              "action": "removed",
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-              "policy_records": [
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-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-                  "marker_token": "CD8",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
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-              "action": "added",
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-                  "marker_token": "FCER1A",
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-                  "protein_resolution": "allow",
-                  "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#FceR1a",
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-              "relation": "RO:0015015",
-              "relation_label": "has high plasma membrane amount",
-              "sense": "high",
-              "asserted": "False",
-              "pr": "PR:000007431",
-              "pr_label": "high affinity immunoglobulin epsilon receptor subunit alpha",
-              "cd_synonym": "",
-              "uniprot_human": "UniProtKB:P12319",
-              "uniprot_mouse": "UniProtKB:P20489",
-              "xrefs": "IUPHARobj:2933",
-              "hgnc_id": "HGNC:3609",
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-            },
-            {
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-              "cell_label": "mature basophil",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
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-              "enhanced_tokens": [
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-              "resolution_paths": [
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-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
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-                }
-              ]
-            },
-            {
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-              "relation_label": "lacks_plasma_membrane_part",
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-              "asserted": "False",
-              "pr": "PR:000001084",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
-              "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-              "uniprot_human": "UniProtKB:P01732",
-              "uniprot_mouse": "UniProtKB:P01731",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
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-                "CD8",
-                "CD8A"
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-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
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-                },
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-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
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-                }
-              ]
-            },
-            {
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-              "relation": "RO:0002104",
-              "relation_label": "has plasma membrane part",
-              "sense": "positive",
-              "asserted": "False",
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-              "pr_label": "tumor necrosis factor ligand superfamily member 5",
-              "cd_synonym": "CD154 (exact); CD40 (exact); CD40L (related); CD40LG (exact)",
-              "uniprot_human": "UniProtKB:P29965",
-              "uniprot_mouse": "UniProtKB:P27548",
-              "xrefs": "PIRSF:PIRSF016527",
-              "hgnc_id": "HGNC:11935",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-            {
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-      }
-    },
-    {
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-        "CL:0000043"
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-      "outcome": "unchanged",
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-      "ranks": {
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-      "factor_edges": [
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-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-                "CD16:high",
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-                "CD16:high",
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-                "CD19-",
-                "CD33+ (1 of 2 alt.)"
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-                "CD14:low/CD14- (no axiom on any alt.)",
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-                "CD45+",
-                "CD193-",
-                "CD16:high",
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-            },
-            {
-              "cl_id": "CL:0000582",
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-            },
-            {
-              "cl_id": "CL:0001021",
-              "label": "CD34-positive, CD38-positive common lymphoid progenitor",
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-                "CD14- (1 of 2 alt.)",
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-                "CD123-",
-                "CD15:high/CD66B+ (no axiom on any alt.)",
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-                "CD16:high",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD64-/CD33+ (no axiom on any alt.)"
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-            },
-            {
-              "cl_id": "CL:0001057",
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-                "CD14- (1 of 2 alt.)",
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-                "CD19-"
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-                "CD45+",
-                "CD15:high/CD66B+ (no axiom on any alt.)",
-                "CD193-",
-                "CD16:high",
-                "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-                "CD64-/CD33+ (no axiom on any alt.)"
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-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002000",
-              "label": "Kit-positive erythroid progenitor cell",
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-                "CD14- (1 of 2 alt.)",
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-                "CD45+",
-                "CD15:high/CD66B+ (no axiom on any alt.)",
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD64-/CD33+ (no axiom on any alt.)"
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-                "CD16:high",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD64-/CD33+ (no axiom on any alt.)"
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-              "candidate_sources": [
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-              "rank": 10,
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-          ],
-          "status": "below_top_5",
-          "note": ""
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-      }
-    },
-    {
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-      "subject_id": "SOULCAP:SC000022",
-      "label": "Eosinophil",
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-      "match_type": "Exact",
-      "targets": [
-        "CL:0000771"
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-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
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-        "010": 4,
-        "011": 4,
-        "100": 4,
-        "101": 4,
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-      "factor_edges": [
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-      ],
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-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD56-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-          ],
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-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000024/Exact",
-      "subject_id": "SOULCAP:SC000024",
-      "label": "Antibody Secreting Cell",
-      "cohort": "provisional",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000946"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": null,
-        "001": null,
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-        "011": null,
-        "100": null,
-        "101": null,
-        "110": null,
-        "111": null
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-      "factor_edges": [
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-          "factor": "A",
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-      ],
-      "source_profile": {
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-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "ASC",
-        "Full Name": "Antibody Secreting Cell",
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-        "Type of Match": "Surface Only (SO)",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
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-        "Required phenotypic markers": "live/ CD45+ CD19+ CD27+/hi CD38hi ",
-        "Ideal phenotypic markers": "CD20+/-",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
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-          "label": "IgD plasmablast",
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-        "Parent": "",
-        "Abbreviation": "T1/T2 B ",
-        "Full Name": "Transitonal B cell 1 and 2",
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-        "Type of Match": "",
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-        "CL Mapping Notes": ""
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-      "subject_id": "SOULCAP:SC000029",
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-      "targets": [
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-      ],
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-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "Mature B",
-        "Full Name": "Mature B cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
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-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
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-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
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-              "CD20+ (1 of 2 alt.)",
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-            ],
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-              "CD56-",
-              "CD27-",
-              "CD127-",
-              "CD16-",
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-            ],
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-            ],
-            "lexical_evidence": null,
-            "rank": 1
-          },
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-              "conflicting_alias": false
-            },
-            {
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-              "level": "negative",
-              "action": "removed",
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-              "conflicting_alias": false
-            },
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
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-                  "marker_token": "CD3",
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-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-                }
-              ],
-              "conflicting_alias": false
-            },
-            {
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-              "conflicting_alias": false
-            }
-          ],
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-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
-              "legacy_tokens": [
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-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
-              ],
-              "resolution_paths": [
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-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            },
-            {
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-              "relation_label": "lacks_plasma_membrane_part",
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-              "pr": "PR:000001879",
-              "pr_label": "leukosialin",
-              "cd_synonym": "CD43 (related)",
-              "uniprot_human": "UniProtKB:P16150",
-              "uniprot_mouse": "UniProtKB:P15702",
-              "xrefs": "PIRSF:PIRSF001994",
-              "hgnc_id": "HGNC:11249",
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-              "legacy_tokens": [
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-              ],
-              "enhanced_tokens": [],
-              "resolution_paths": []
-            },
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-                "CD23A"
-              ],
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-              ],
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-                  "tokens": [
-                    "CD23"
-                  ]
-                }
-              ]
-            },
-            {
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-              "relation": "RO:0002104",
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-              "asserted": "False",
-              "pr": "PR:000001014",
-              "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RABC",
-              "cd_synonym": "CD45R (related); CD45RABC (label)",
-              "uniprot_human": "UniProtKB:P08575-3",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "HGNC:9666",
-              "hgnc_symbol": "PTPRC",
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-                "CD45RABC"
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-              "enhanced_tokens": [
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-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
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-                  "tokens": [
-                    "CD45RABC"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
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-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            "rank": 5
-          },
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-            ],
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-              "CD45+",
-              "CD27-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
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-            "candidate_sources": [
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-            "rank": 5
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-              "uniprot_mouse": "UniProtKB:P22646",
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-                },
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-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
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-                }
-              ]
-            }
-          ]
-        },
-        {
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-              "CD127-",
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-              "CD15-/CD66B- (no axiom on any alt.)",
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-              "CD27-",
-              "CD38- (1 of 2 alt.)",
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-            ],
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-              "CD45+",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
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-            "candidate_sources": [
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-          "token_changes": [
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-              "uniprot_mouse": "UniProtKB:P22646",
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-                  "tokens": [
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-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
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-              "CD45+",
-              "CD20+ (1 of 2 alt.)",
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-              "CD20+"
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-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            "candidate_sources": [
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-              "CD20+ (1 of 2 alt.)",
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-              "CD20+"
-            ],
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-          },
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-            },
-            {
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-              ],
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-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
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-                },
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-                  "source_token": "CD3E",
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-                }
-              ]
-            },
-            {
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-              "relation": "RO:0002104",
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-              "asserted": "True",
-              "pr": "PR:000001014",
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-              "cd_synonym": "CD45R (related); CD45RABC (label)",
-              "uniprot_human": "UniProtKB:P08575-3",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "HGNC:9666",
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-              "legacy_tokens": [
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-                "CD45RABC"
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-                }
-              ]
-            }
-          ]
-        },
-        {
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-              "CD45+ (dim)",
-              "CD20+ (1 of 2 alt.)",
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-              "CD15-/CD66B- (no axiom on any alt.)",
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-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
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-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-              "hgnc_id": "HGNC:9666",
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-              ],
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-                }
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-            },
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-              "hgnc_id": "HGNC:1674",
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-                },
-                {
-                  "via": "exact_alias",
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-                  "tokens": [
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-                }
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-            }
-          ]
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-              "cl_id": "CL:0002109",
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-                "CD20+ (1 of 2 alt.)",
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-                "CD20+"
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-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38-/CD10:low (no axiom on any alt.)",
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-                "IGD+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            {
-              "cl_id": "CL:0002110",
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-                "CD20+ (1 of 2 alt.)",
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-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "cl_id": "CL:0002054",
-              "label": "fraction E immature B cell",
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-                "CD127-",
-                "CD20+"
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-                "CD27-",
-                "CD38:low/CD38-/CD10:low (no axiom on any alt.)",
-                "IGD+",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "candidate_sources": [
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-              "rank_worst": 26
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-          ],
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-          "note": ""
-        }
-      }
-    },
-    {
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-      "subject_id": "SOULCAP:SC000031",
-      "label": "Naive B cell",
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-      "match_type": "Exact",
-      "targets": [
-        "CL:0000788"
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-      "lost_top5": false,
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-      "ranks": {
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-        "101": 5,
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-        "Parent": "Mature B",
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-                "CD16-",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-          ],
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-              ],
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-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-          ],
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-          "note": ""
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 5,
-              "rank_best": 5,
-              "rank_worst": 8
-            }
-          ],
-          "status": "hit_at_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000032/Exact",
-      "subject_id": "SOULCAP:SC000032",
-      "label": "Double Negative B cells",
-      "cohort": "provisional",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000981"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 5,
-        "001": 5,
-        "010": 5,
-        "011": 5,
-        "100": 5,
-        "101": 5,
-        "110": 5,
-        "111": 5
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": 5,
-          "rank_after": 5,
-          "top5_delta": 0
-        },
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-          "factor": "P",
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-          "top5_delta": 0
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-        },
-        {
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-          "rank_after": 5,
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-          "rank_after": 5,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "110",
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-          "rank_before": 5,
-          "rank_after": 5,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "Mature B",
-        "Abbreviation": "BDN",
-        "Full Name": "Double Negative B cells",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+) CD27- (CD38lo/-|CD10-) CD24- IgD- ",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
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-          "cl_id": "CL:0000961",
-          "label": "Bm1 B cell",
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-              "CD20+ (1 of 2 alt.)",
-              "CD38- (1 of 3 alt.)",
-              "CD20+"
-            ],
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-              "CD16-",
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-              "pr": "PR:000001020",
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-              "uniprot_human": "UniProtKB:P07766",
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-              "uniprot_human": "UniProtKB:P16150",
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-              ]
-            },
-            {
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-              "cd_synonym": "CD45R (related); CD45RABC (label)",
-              "uniprot_human": "UniProtKB:P08575-3",
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-              "xrefs": "",
-              "hgnc_id": "HGNC:9666",
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-                "CD45RABC"
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-            }
-          ]
-        },
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-        },
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-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
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-                }
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-            }
-          ]
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-                "CD45+",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD24-",
-                "IGD-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "IGD-",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD56-",
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-                "CD16-",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
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-                "IGD-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            },
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-              ],
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-                "CD45+",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
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-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "rank_worst": 8
-            }
-          ],
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-          "note": ""
-        },
-        "110": {
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-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000032",
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-          ],
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-                "CD24-",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            {
-              "cl_id": "CL:0002109",
-              "label": "B220-positive CD38-positive naive B cell",
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-                "CD20+ (1 of 2 alt.)",
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-                "CD20+"
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-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002110",
-              "label": "B220-low CD38-positive naive B cell",
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-                "CD20+ (1 of 2 alt.)",
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-                "CD20+"
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            {
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-                "CD20+"
-              ],
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-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24-",
-                "IGD-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-            }
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-              ],
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-                "CD3-",
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-                "CD45+",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
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-                "IGD-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "rank": 5,
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-              "rank_worst": 8
-            }
-          ],
-          "status": "hit_at_5",
-          "note": ""
-        },
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-          "case_id": "provisional/SOULCAP:SC000032/Exact",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000032",
-          "match_type": "Exact",
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-            "CL:0000981"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
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-              ],
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-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD24-",
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-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "lexical_evidence": null
-            },
-            {
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-                "CD20+ (1 of 2 alt.)",
-                "CD38- (1 of 3 alt.)",
-                "CD20+"
-              ],
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-                "CD3-",
-                "CD56-",
-                "CD27-",
-                "CD24-",
-                "IGD-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "candidate_sources": [
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-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002109",
-              "label": "B220-positive CD38-positive naive B cell",
-              "score": 14,
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-                "CD45+",
-                "CD20+ (1 of 2 alt.)",
-                "CD27-",
-                "CD20+"
-              ],
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24-",
-                "IGD-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002110",
-              "label": "B220-low CD38-positive naive B cell",
-              "score": 14,
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-                "CD20+ (1 of 2 alt.)",
-                "CD27-",
-                "CD20+"
-              ],
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-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24-",
-                "IGD-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000981",
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-                "CD27-",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24-",
-                "IGD-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            }
-          ],
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-              "cl_id": "CL:0000981",
-              "label": "double negative memory B cell",
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-              "matched": [
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-                "CD27-",
-                "CD20+"
-              ],
-              "gaps": [
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-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24-",
-                "IGD-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 5,
-              "rank_best": 5,
-              "rank_worst": 8
-            }
-          ],
-          "status": "hit_at_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000033/Broad",
-      "subject_id": "SOULCAP:SC000033",
-      "label": "Double Negative B cell 1",
-      "cohort": "provisional",
-      "match_type": "Broad",
-      "targets": [
-        "CL:0000981"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 12,
-        "001": 12,
-        "010": 12,
-        "011": 12,
-        "100": 12,
-        "101": 12,
-        "110": 12,
-        "111": 12
-      },
-      "factor_edges": [
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-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": 12,
-          "rank_after": 12,
-          "top5_delta": 0
-        },
-        {
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-          "rank_after": 12,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
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-        },
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-          "rank_after": 12,
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-        {
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-        {
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-        },
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-          "rank_after": 12,
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-        },
-        {
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-          "before": "100",
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-          "rank_before": 12,
-          "rank_after": 12,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "101",
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-          "rank_before": 12,
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-          "top5_delta": 0
-        },
-        {
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-          "before": "110",
-          "after": "111",
-          "rank_before": 12,
-          "rank_after": 12,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "BDN",
-        "Abbreviation": "BDN1",
-        "Full Name": "Double Negative B cell 1",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+) CD27- (CD38lo/-|CD10-) CD24+ IgD- CD21+ CD11c- CD185+ IgE-",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000843",
-          "label": "follicular B cell",
-          "expected_target": false,
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-            "label": "follicular B cell",
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-            "matched": [
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-              "CD45+",
-              "CD20+ (1 of 2 alt.)",
-              "CD21+",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD56-",
-              "CD27-",
-              "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-              "CD24+",
-              "IGD-",
-              "CD11C-",
-              "CD185+",
-              "IGE-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
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-            "disqualified": false,
-            "candidate_sources": [
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-            ],
-            "lexical_evidence": null,
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-              "CD20+ (1 of 2 alt.)",
-              "CD21+",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD3-",
-              "CD56-",
-              "CD27-",
-              "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-              "CD24+",
-              "IGD-",
-              "CD11C-",
-              "CD185+",
-              "IGE-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
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-            "candidate_sources": [
-              "marker_axioms"
-            ],
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-            "rank": 4
-          },
-          "token_changes": [
-            {
-              "token": "CD45R",
-              "level": "positive",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
-                }
-              ],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD43",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            }
-          ],
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-                }
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-            },
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-              ],
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-            },
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-              "xrefs": "",
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-            }
-          ]
-        },
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-            "rank": 5
-          },
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-              "action": "removed",
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-              "conflicting_alias": false
-            },
-            {
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-              "action": "removed",
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-                  "marker_token": "CD3",
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-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-                }
-              ],
-              "conflicting_alias": false
-            },
-            {
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-              "level": "high",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
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-              "pr": "PR:000001932",
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-              "uniprot_human": "UniProtKB:P25063",
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-              "hgnc_id": "HGNC:1645",
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-                "CD24A"
-              ],
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-                  "source_token": "CD24",
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-                    "CD24"
-                  ]
-                },
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000001932",
-                  "tokens": [
-                    "CD24"
-                  ]
-                }
-              ]
-            },
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-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
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-                "CD3E"
-              ],
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-                "CD3E"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            },
-            {
-              "cell": "CL:0000959",
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-                "CD23A"
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-                  "via": "exact_alias",
-                  "source_token": "CD23",
-                  "tokens": [
-                    "CD23"
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-                }
-              ]
-            }
-          ]
-        },
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-              "CD21+",
-              "CD20+"
-            ],
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-              "CD56-",
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-              "IGD-",
-              "CD11C-",
-              "CD185+",
-              "IGE-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
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-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
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-            ],
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-            "rank": 1
-          },
-          "after": {
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-              "CD38- (1 of 3 alt.)",
-              "CD21+",
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-            ],
-            "gaps": [
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-              "CD27-",
-              "CD24+",
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-              "CD11C-",
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-              "IGE-",
-              "CD127-",
-              "CD16-",
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-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
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-            "lexical_evidence": null,
-            "rank": 1
-          },
-          "token_changes": [
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-              "token": "CD45R",
-              "level": "positive",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD23A",
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-              "action": "removed",
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-              "conflicting_alias": false
-            },
-            {
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-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
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-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-                }
-              ],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD43",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
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-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
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-              ],
-              "enhanced_tokens": [
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-                  "tokens": [
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-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
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-                }
-              ]
-            },
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-              "pr": "PR:000001879",
-              "pr_label": "leukosialin",
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-              "uniprot_human": "UniProtKB:P16150",
-              "uniprot_mouse": "UniProtKB:P15702",
-              "xrefs": "PIRSF:PIRSF001994",
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-              "hgnc_symbol": "SPN",
-              "legacy_tokens": [
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-              ],
-              "enhanced_tokens": [],
-              "resolution_paths": []
-            },
-            {
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-              "cell_label": "Bm1 B cell",
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-              "pr_label": "low affinity immunoglobulin epsilon Fc receptor",
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-              "uniprot_human": "UniProtKB:P06734",
-              "uniprot_mouse": "UniProtKB:P20693",
-              "xrefs": "IUPHARobj:2935; PIRSF:PIRSF002426",
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-              ],
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-              ]
-            },
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-              "cd_synonym": "CD45R (related); CD45RABC (label)",
-              "uniprot_human": "UniProtKB:P08575-3",
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-              "xrefs": "",
-              "hgnc_id": "HGNC:9666",
-              "hgnc_symbol": "PTPRC",
-              "legacy_tokens": [
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-                "CD45RABC"
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-              "enhanced_tokens": [
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-              "resolution_paths": [
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-                  "tokens": [
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-                }
-              ]
-            }
-          ]
-        },
-        {
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-          "label": "double negative memory B cell",
-          "expected_target": true,
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-            "rank": 12
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-            "disqualified": false,
-            "candidate_sources": [
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-            "rank": 12
-          },
-          "token_changes": [
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-              "policy_records": [
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-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-              "pr": "PR:000001020",
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-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
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-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
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-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
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-              "resolution_paths": [
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-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
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-                },
-                {
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-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
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-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0002055",
-          "label": "CD38-negative immature B cell",
-          "expected_target": false,
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-            "label": "CD38-negative immature B cell",
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-            "gaps": [
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-              "IGE-",
-              "CD127-",
-              "CD16-",
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-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-        "Abbreviation": "BDN2",
-        "Full Name": "Double Negative B cell 2",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+) CD27- (CD38lo/-|CD10-) CD24- IgD- CD21- CD11c+ CD185-",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000981",
-          "label": "double negative memory B cell",
-          "expected_target": true,
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-            "cl_id": "CL:0000981",
-            "label": "double negative memory B cell",
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-              "CD3-",
-              "CD20+ (1 of 2 alt.)",
-              "CD27-",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD56-",
-              "CD45+",
-              "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-              "CD24-",
-              "IGD-",
-              "CD21-",
-              "CD11C+",
-              "CD185-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 3,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 4
-          },
-          "after": {
-            "cl_id": "CL:0000981",
-            "label": "double negative memory B cell",
-            "score": 13,
-            "matched": [
-              "CD20+ (1 of 2 alt.)",
-              "CD27-",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD3-",
-              "CD56-",
-              "CD45+",
-              "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-              "CD24-",
-              "IGD-",
-              "CD21-",
-              "CD11C+",
-              "CD185-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 3,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 4
-          },
-          "token_changes": [
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0000981",
-              "cell_label": "double negative memory B cell",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
-              "legacy_tokens": [
-                "CD3",
-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0002102",
-          "label": "CD38-negative naive B cell",
-          "expected_target": false,
-          "before": {
-            "cl_id": "CL:0002102",
-            "label": "CD38-negative naive B cell",
-            "score": 20,
-            "matched": [
-              "CD3-",
-              "CD20+ (1 of 2 alt.)",
-              "CD27-",
-              "CD38- (1 of 3 alt.)",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD56-",
-              "CD45+",
-              "CD24-",
-              "IGD-",
-              "CD21-",
-              "CD11C+",
-              "CD185-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 2,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 1
-          },
-          "after": {
-            "cl_id": "CL:0002102",
-            "label": "CD38-negative naive B cell",
-            "score": 16,
-            "matched": [
-              "CD20+ (1 of 2 alt.)",
-              "CD27-",
-              "CD38- (1 of 3 alt.)",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD3-",
-              "CD56-",
-              "CD45+",
-              "CD24-",
-              "IGD-",
-              "CD21-",
-              "CD11C+",
-              "CD185-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 2,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 1
-          },
-          "token_changes": [
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0002102",
-              "cell_label": "CD38-negative naive B cell",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
-              "legacy_tokens": [
-                "CD3",
-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0002103",
-          "label": "IgG-positive double negative memory B cell",
-          "expected_target": false,
-          "before": {
-            "cl_id": "CL:0002103",
-            "label": "IgG-positive double negative memory B cell",
-            "score": 17,
-            "matched": [
-              "CD3-",
-              "CD20+ (1 of 2 alt.)",
-              "CD27-",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD56-",
-              "CD45+",
-              "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-              "CD24-",
-              "IGD-",
-              "CD21-",
-              "CD11C+",
-              "CD185-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 3,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 5
-          },
-          "after": {
-            "cl_id": "CL:0002103",
-            "label": "IgG-positive double negative memory B cell",
-            "score": 13,
-            "matched": [
-              "CD20+ (1 of 2 alt.)",
-              "CD27-",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD3-",
-              "CD56-",
-              "CD45+",
-              "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-              "CD24-",
-              "IGD-",
-              "CD21-",
-              "CD11C+",
-              "CD185-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 3,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 5
-          },
-          "token_changes": [
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0002103",
-              "cell_label": "IgG-positive double negative memory B cell",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
-              "legacy_tokens": [
-                "CD3",
-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0002109",
-          "label": "B220-positive CD38-positive naive B cell",
-          "expected_target": false,
-          "before": {
-            "cl_id": "CL:0002109",
-            "label": "B220-positive CD38-positive naive B cell",
-            "score": 19,
-            "matched": [
-              "CD3-",
-              "CD45+",
-              "CD20+ (1 of 2 alt.)",
-              "CD27-",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD56-",
-              "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-              "CD24-",
-              "IGD-",
-              "CD21-",
-              "CD11C+",
-              "CD185-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 2
-          },
-          "after": {
-            "cl_id": "CL:0002109",
-            "label": "B220-positive CD38-positive naive B cell",
-            "score": 15,
-            "matched": [
-              "CD45+",
-              "CD20+ (1 of 2 alt.)",
-              "CD27-",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD3-",
-              "CD56-",
-              "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-              "CD24-",
-              "IGD-",
-              "CD21-",
-              "CD11C+",
-              "CD185-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 2
-          },
-          "token_changes": [
-            {
-              "token": "CD45R",
-              "level": "positive",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
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-              "cell_label": "B220-positive CD38-positive naive B cell",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
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-                "CD3",
-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            },
-            {
-              "cell": "CL:0002109",
-              "cell_label": "B220-positive CD38-positive naive B cell",
-              "relation": "RO:0002104",
-              "relation_label": "has plasma membrane part",
-              "sense": "positive",
-              "asserted": "True",
-              "pr": "PR:000001014",
-              "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RABC",
-              "cd_synonym": "CD45R (related); CD45RABC (label)",
-              "uniprot_human": "UniProtKB:P08575-3",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "HGNC:9666",
-              "hgnc_symbol": "PTPRC",
-              "legacy_tokens": [
-                "CD45R",
-                "CD45RABC"
-              ],
-              "enhanced_tokens": [
-                "CD45RABC"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD45RABC",
-                  "tokens": [
-                    "CD45RABC"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0002110",
-          "label": "B220-low CD38-positive naive B cell",
-          "expected_target": false,
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-              "CD45+ (dim)",
-              "CD20+ (1 of 2 alt.)",
-              "CD27-",
-              "CD20+"
-            ],
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD56-",
-              "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-              "CD24-",
-              "IGD-",
-              "CD21-",
-              "CD11C+",
-              "CD185-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 3
-          },
-          "after": {
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-            "label": "B220-low CD38-positive naive B cell",
-            "score": 15,
-            "matched": [
-              "CD45+ (dim)",
-              "CD20+ (1 of 2 alt.)",
-              "CD27-",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD3-",
-              "CD56-",
-              "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-              "CD24-",
-              "IGD-",
-              "CD21-",
-              "CD11C+",
-              "CD185-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 3
-          },
-          "token_changes": [
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
-                }
-              ],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD45R",
-              "level": "low",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0002110",
-              "cell_label": "B220-low CD38-positive naive B cell",
-              "relation": "RO:0015016",
-              "relation_label": "has low plasma membrane amount",
-              "sense": "low",
-              "asserted": "True",
-              "pr": "PR:000001014",
-              "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RABC",
-              "cd_synonym": "CD45R (related); CD45RABC (label)",
-              "uniprot_human": "UniProtKB:P08575-3",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "HGNC:9666",
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002109",
-              "label": "B220-positive CD38-positive naive B cell",
-              "score": 15,
-              "matched": [
-                "CD45+",
-                "CD20+ (1 of 2 alt.)",
-                "CD27-",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24-",
-                "IGD-",
-                "CD21-",
-                "CD11C+",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
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-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002110",
-              "label": "B220-low CD38-positive naive B cell",
-              "score": 15,
-              "matched": [
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-                "CD20+ (1 of 2 alt.)",
-                "CD27-",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24-",
-                "IGD-",
-                "CD21-",
-                "CD11C+",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000981",
-              "label": "double negative memory B cell",
-              "score": 13,
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-                "CD20+ (1 of 2 alt.)",
-                "CD27-",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24-",
-                "IGD-",
-                "CD21-",
-                "CD11C+",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002103",
-              "label": "IgG-positive double negative memory B cell",
-              "score": 13,
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-                "CD27-",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24-",
-                "IGD-",
-                "CD21-",
-                "CD11C+",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:0000981",
-              "label": "double negative memory B cell",
-              "score": 13,
-              "matched": [
-                "CD20+ (1 of 2 alt.)",
-                "CD27-",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24-",
-                "IGD-",
-                "CD21-",
-                "CD11C+",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 4,
-              "rank_best": 4,
-              "rank_worst": 6
-            }
-          ],
-          "status": "hit_at_5",
-          "note": ""
-        },
-        "111": {
-          "case_id": "provisional/SOULCAP:SC000034/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000034",
-          "match_type": "Broad",
-          "targets": [
-            "CL:0000981"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 4,
-          "rank_best": 4,
-          "rank_worst": 6,
-          "missing_targets": [],
-          "candidates": [
-            {
-              "cl_id": "CL:0002102",
-              "label": "CD38-negative naive B cell",
-              "score": 16,
-              "matched": [
-                "CD20+ (1 of 2 alt.)",
-                "CD27-",
-                "CD38- (1 of 3 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD24-",
-                "IGD-",
-                "CD21-",
-                "CD11C+",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002109",
-              "label": "B220-positive CD38-positive naive B cell",
-              "score": 15,
-              "matched": [
-                "CD45+",
-                "CD20+ (1 of 2 alt.)",
-                "CD27-",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24-",
-                "IGD-",
-                "CD21-",
-                "CD11C+",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002110",
-              "label": "B220-low CD38-positive naive B cell",
-              "score": 15,
-              "matched": [
-                "CD45+ (dim)",
-                "CD20+ (1 of 2 alt.)",
-                "CD27-",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24-",
-                "IGD-",
-                "CD21-",
-                "CD11C+",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000981",
-              "label": "double negative memory B cell",
-              "score": 13,
-              "matched": [
-                "CD20+ (1 of 2 alt.)",
-                "CD27-",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24-",
-                "IGD-",
-                "CD21-",
-                "CD11C+",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002103",
-              "label": "IgG-positive double negative memory B cell",
-              "score": 13,
-              "matched": [
-                "CD20+ (1 of 2 alt.)",
-                "CD27-",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24-",
-                "IGD-",
-                "CD21-",
-                "CD11C+",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:0000981",
-              "label": "double negative memory B cell",
-              "score": 13,
-              "matched": [
-                "CD20+ (1 of 2 alt.)",
-                "CD27-",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24-",
-                "IGD-",
-                "CD21-",
-                "CD11C+",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 4,
-              "rank_best": 4,
-              "rank_worst": 6
-            }
-          ],
-          "status": "hit_at_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000035/Broad",
-      "subject_id": "SOULCAP:SC000035",
-      "label": "Double Negative B cell 3",
-      "cohort": "provisional",
-      "match_type": "Broad",
-      "targets": [
-        "CL:0000981"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 5,
-        "001": 5,
-        "010": 5,
-        "011": 5,
-        "100": 5,
-        "101": 5,
-        "110": 5,
-        "111": 5
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": 5,
-          "rank_after": 5,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "000",
-          "after": "010",
-          "rank_before": 5,
-          "rank_after": 5,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "000",
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-          "top5_delta": 0
-        },
-        {
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-          "top5_delta": 0
-        },
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-          "factor": "P",
-          "before": "001",
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-          "rank_after": 5,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
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-          "rank_after": 5,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "010",
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-          "rank_before": 5,
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-          "top5_delta": 0
-        },
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-          "factor": "A",
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-          "rank_after": 5,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "100",
-          "after": "110",
-          "rank_before": 5,
-          "rank_after": 5,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "100",
-          "after": "101",
-          "rank_before": 5,
-          "rank_after": 5,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "101",
-          "after": "111",
-          "rank_before": 5,
-          "rank_after": 5,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "110",
-          "after": "111",
-          "rank_before": 5,
-          "rank_after": 5,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "BDN",
-        "Abbreviation": "BDN3",
-        "Full Name": "Double Negative B cell 3",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+) CD27- (CD38lo/-|CD10-) CD24+ IgD- CD21- CD11c- CD185-",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000958",
-          "label": "T1 B cell",
-          "expected_target": false,
-          "before": {
-            "cl_id": "CL:0000958",
-            "label": "T1 B cell",
-            "score": 19,
-            "matched": [
-              "CD3-",
-              "CD20+ (1 of 2 alt.)",
-              "CD24+ (hi)",
-              "CD21-",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD56-",
-              "CD45+",
-              "CD27-",
-              "CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)",
-              "IGD-",
-              "CD11C-",
-              "CD185-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 2
-          },
-          "after": {
-            "cl_id": "CL:0000958",
-            "label": "T1 B cell",
-            "score": 15,
-            "matched": [
-              "CD20+ (1 of 2 alt.)",
-              "CD24+ (hi)",
-              "CD21-",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD3-",
-              "CD56-",
-              "CD45+",
-              "CD27-",
-              "CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)",
-              "IGD-",
-              "CD11C-",
-              "CD185-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 2
-          },
-          "token_changes": [
-            {
-              "token": "CD23A",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
-                }
-              ],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD24A",
-              "level": "high",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0000958",
-              "cell_label": "T1 B cell",
-              "relation": "RO:0015015",
-              "relation_label": "has high plasma membrane amount",
-              "sense": "high",
-              "asserted": "False",
-              "pr": "PR:000001932",
-              "pr_label": "signal transducer CD24",
-              "cd_synonym": "CD24 (label); CD24A (related)",
-              "uniprot_human": "UniProtKB:P25063",
-              "uniprot_mouse": "UniProtKB:P24807",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1645",
-              "hgnc_symbol": "CD24",
-              "legacy_tokens": [
-                "CD24",
-                "CD24A"
-              ],
-              "enhanced_tokens": [
-                "CD24"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD24",
-                  "tokens": [
-                    "CD24"
-                  ]
-                },
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000001932",
-                  "tokens": [
-                    "CD24"
-                  ]
-                }
-              ]
-            },
-            {
-              "cell": "CL:0000958",
-              "cell_label": "T1 B cell",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
-              "legacy_tokens": [
-                "CD3",
-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            },
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-          ],
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-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24+",
-                "IGD-",
-                "CD21-",
-                "CD11C-",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            }
-          ],
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-              "cl_id": "CL:0000981",
-              "label": "double negative memory B cell",
-              "score": 13,
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-                "CD27-",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24+",
-                "IGD-",
-                "CD21-",
-                "CD11C-",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null,
-              "rank": 5,
-              "rank_best": 5,
-              "rank_worst": 12
-            }
-          ],
-          "status": "hit_at_5",
-          "note": ""
-        },
-        "111": {
-          "case_id": "provisional/SOULCAP:SC000035/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000035",
-          "match_type": "Broad",
-          "targets": [
-            "CL:0000981"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 5,
-          "rank_best": 5,
-          "rank_worst": 12,
-          "missing_targets": [],
-          "candidates": [
-            {
-              "cl_id": "CL:0002102",
-              "label": "CD38-negative naive B cell",
-              "score": 16,
-              "matched": [
-                "CD20+ (1 of 2 alt.)",
-                "CD27-",
-                "CD38- (1 of 3 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD24+",
-                "IGD-",
-                "CD21-",
-                "CD11C-",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000958",
-              "label": "T1 B cell",
-              "score": 15,
-              "matched": [
-                "CD20+ (1 of 2 alt.)",
-                "CD24+ (hi)",
-                "CD21-",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD27-",
-                "CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)",
-                "IGD-",
-                "CD11C-",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002109",
-              "label": "B220-positive CD38-positive naive B cell",
-              "score": 15,
-              "matched": [
-                "CD45+",
-                "CD20+ (1 of 2 alt.)",
-                "CD27-",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24+",
-                "IGD-",
-                "CD21-",
-                "CD11C-",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002110",
-              "label": "B220-low CD38-positive naive B cell",
-              "score": 15,
-              "matched": [
-                "CD45+ (dim)",
-                "CD20+ (1 of 2 alt.)",
-                "CD27-",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24+",
-                "IGD-",
-                "CD21-",
-                "CD11C-",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000981",
-              "label": "double negative memory B cell",
-              "score": 13,
-              "matched": [
-                "CD20+ (1 of 2 alt.)",
-                "CD27-",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24+",
-                "IGD-",
-                "CD21-",
-                "CD11C-",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:0000981",
-              "label": "double negative memory B cell",
-              "score": 13,
-              "matched": [
-                "CD20+ (1 of 2 alt.)",
-                "CD27-",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-                "CD24+",
-                "IGD-",
-                "CD21-",
-                "CD11C-",
-                "CD185-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 5,
-              "rank_best": 5,
-              "rank_worst": 12
-            }
-          ],
-          "status": "hit_at_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000036/Broad",
-      "subject_id": "SOULCAP:SC000036",
-      "label": "Double Negative B cell 4",
-      "cohort": "provisional",
-      "match_type": "Broad",
-      "targets": [
-        "CL:0000981"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 12,
-        "001": 12,
-        "010": 12,
-        "011": 12,
-        "100": 12,
-        "101": 12,
-        "110": 12,
-        "111": 12
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": 12,
-          "rank_after": 12,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "000",
-          "after": "010",
-          "rank_before": 12,
-          "rank_after": 12,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "000",
-          "after": "001",
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-          "rank_after": 12,
-          "top5_delta": 0
-        },
-        {
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-          "rank_after": 12,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "001",
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-          "rank_before": 12,
-          "rank_after": 12,
-          "top5_delta": 0
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-        {
-          "factor": "A",
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-          "rank_before": 12,
-          "rank_after": 12,
-          "top5_delta": 0
-        },
-        {
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-          "before": "010",
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-          "rank_after": 12,
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-          "rank_after": 12,
-          "top5_delta": 0
-        },
-        {
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-          "before": "100",
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-          "rank_before": 12,
-          "rank_after": 12,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "100",
-          "after": "101",
-          "rank_before": 12,
-          "rank_after": 12,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "101",
-          "after": "111",
-          "rank_before": 12,
-          "rank_after": 12,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "110",
-          "after": "111",
-          "rank_before": 12,
-          "rank_after": 12,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "BDN",
-        "Abbreviation": "BDN4",
-        "Full Name": "Double Negative B cell 4",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+) CD27- (CD38lo/-|CD10-) CD24+ IgD- CD21+ CD11c- CD185+ IgE+",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000843",
-          "label": "follicular B cell",
-          "expected_target": false,
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-            "label": "follicular B cell",
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-              "CD45+",
-              "CD20+ (1 of 2 alt.)",
-              "CD21+",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD56-",
-              "CD27-",
-              "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-              "CD24+",
-              "IGD-",
-              "CD11C-",
-              "CD185+",
-              "IGE+",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
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-            "candidate_sources": [
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-            ],
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-              "CD20+ (1 of 2 alt.)",
-              "CD21+",
-              "CD20+"
-            ],
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD3-",
-              "CD56-",
-              "CD27-",
-              "CD38:low/CD38-/CD10- (no axiom on any alt.)",
-              "CD24+",
-              "IGD-",
-              "CD11C-",
-              "CD185+",
-              "IGE+",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
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-              "level": "positive",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
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-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
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-                }
-              ],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD43",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0000843",
-              "cell_label": "follicular B cell",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001020",
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-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
-              "legacy_tokens": [
-                "CD3",
-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
-              ],
-              "resolution_paths": [
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-                  "via": "exact_alias",
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-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
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-                }
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-            },
-            {
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-              "pr": "PR:000001879",
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-              "uniprot_human": "UniProtKB:P16150",
-              "uniprot_mouse": "UniProtKB:P15702",
-              "xrefs": "PIRSF:PIRSF001994",
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-              ],
-              "enhanced_tokens": [],
-              "resolution_paths": []
-            },
-            {
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-              "relation": "RO:0002104",
-              "relation_label": "has plasma membrane part",
-              "sense": "positive",
-              "asserted": "True",
-              "pr": "PR:000001014",
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-              "cd_synonym": "CD45R (related); CD45RABC (label)",
-              "uniprot_human": "UniProtKB:P08575-3",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "HGNC:9666",
-              "hgnc_symbol": "PTPRC",
-              "legacy_tokens": [
-                "CD45R",
-                "CD45RABC"
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-              "enhanced_tokens": [
-                "CD45RABC"
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-              "resolution_paths": [
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-                  "source_token": "CD45RABC",
-                  "tokens": [
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-                }
-              ]
-            }
-          ]
-        },
-        {
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-            "label": "T2 B cell",
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-              "CD20+ (1 of 2 alt.)",
-              "CD24+ (hi)",
-              "CD21+",
-              "CD20+"
-            ],
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD56-",
-              "CD45+",
-              "CD27-",
-              "CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)",
-              "IGD-",
-              "CD11C-",
-              "CD185+",
-              "IGE+",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
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-            "disqualified": false,
-            "candidate_sources": [
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-            ],
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-            "rank": 5
-          },
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-            "label": "T2 B cell",
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-              "CD24+ (hi)",
-              "CD21+",
-              "CD20+"
-            ],
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-              "CD3-",
-              "CD56-",
-              "CD45+",
-              "CD27-",
-              "CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)",
-              "IGD-",
-              "CD11C-",
-              "CD185+",
-              "IGE+",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
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-            "candidate_sources": [
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-            "rank": 5
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-          "token_changes": [
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-              "token": "CD23A",
-              "level": "positive",
-              "action": "removed",
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-            },
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
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-              ],
-              "conflicting_alias": false
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-            {
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-            }
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-            },
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-                },
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-            }
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-        },
-        {
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-            },
-            {
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-            },
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-            },
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-          ],
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-            },
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-                "CD45RABC"
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-            }
-          ]
-        },
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-        },
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-          ],
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-              "label": "Bm1 B cell",
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-                "CD3-",
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-                "CD24+",
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-                "CD11C-",
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-                "CD3-",
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-                "CD45+",
-                "CD24+",
-                "IGD-",
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-                "CD11C-",
-                "CD185+",
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-                "CD127-",
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-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "lexical_evidence": null
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-            {
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-                "CD20+ (1 of 2 alt.)",
-                "CD21+",
-                "CD20+"
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-                "CD3-",
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-                "CD27-",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
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-                "IGD-",
-                "CD11C-",
-                "CD185+",
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-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-                "CD3-",
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-                "CD45+",
-                "CD27-",
-                "CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)",
-                "IGD-",
-                "CD11C-",
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-                "IGE+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38-/CD10- (no axiom on any alt.)",
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-                "CD21+",
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-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000037/Exact",
-      "subject_id": "SOULCAP:SC000037",
-      "label": "Memory B cell",
-      "cohort": "provisional",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000787"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
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-        "011": 39,
-        "100": 39,
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-        "110": 39,
-        "111": 39
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-      "factor_edges": [
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-          "factor": "A",
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-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "Bmem",
-        "Full Name": "Memory B cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+) CD27+ CD38lo/-",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000787",
-          "label": "memory B cell",
-          "expected_target": true,
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-              "CD20+"
-            ],
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-              "CD56-",
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-              "CD27+",
-              "CD38:low/CD38- (no axiom on any alt.)",
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-              "CD15-/CD66B- (no axiom on any alt.)",
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-              "CD27+",
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-              "CD15-/CD66B- (no axiom on any alt.)",
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-                  "representation": "unresolved",
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-              "uniprot_human": "UniProtKB:P07766",
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-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
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-              ],
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-                "CD3E"
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-              "resolution_paths": [
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-                    "CD3E"
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-              "CD38- (1 of 2 alt.)",
-              "CD20+"
-            ],
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
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-              "CD56-",
-              "CD45+",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD20+ (1 of 2 alt.)",
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-                "CD56-",
-                "CD38:low/CD38- (no axiom on any alt.)",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD56-",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD38- (1 of 2 alt.)",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            },
-            {
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
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-                "CD127-",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD20+ (1 of 2 alt.)",
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-                "CD56-",
-                "CD38:low/CD38- (no axiom on any alt.)",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD20+ (1 of 2 alt.)",
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-                "CD56-",
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-                "CD27+",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-          "cohort": "provisional",
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD38- (1 of 2 alt.)",
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-                "CD3-",
-                "CD56-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD38- (1 of 2 alt.)",
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-                "CD45+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD27+",
-                "CD38- (1 of 2 alt.)",
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-              ],
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-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD20+ (1 of 2 alt.)",
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-              ],
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-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38- (no axiom on any alt.)",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-            }
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-              ],
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-                "CD56-",
-                "CD45+",
-                "CD27+",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD3-",
-                "CD56-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD38- (1 of 2 alt.)",
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-                "CD3-",
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-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD38- (1 of 2 alt.)",
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-              ],
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-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD20+"
-              ],
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-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38- (no axiom on any alt.)",
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-              "label": "CD38-negative IgG memory B cell",
-              "score": 16,
-              "matched": [
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 2,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002111",
-              "label": "CD38-negative unswitched memory B cell",
-              "score": 16,
-              "matched": [
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 2,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002115",
-              "label": "B220-positive CD38-positive unswitched memory B cell",
-              "score": 16,
-              "matched": [
-                "CD45+",
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 2,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:0000787",
-              "label": "memory B cell",
-              "score": 8,
-              "matched": [
-                "CD20+ (1 of 2 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD27+",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 2,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 39,
-              "rank_best": 39,
-              "rank_worst": 46
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000039/Exact",
-      "subject_id": "SOULCAP:SC000039",
-      "label": "Unswitched Memory B cell",
-      "cohort": "provisional",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000970"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 13,
-        "001": 13,
-        "010": 13,
-        "011": 13,
-        "100": 13,
-        "101": 13,
-        "110": 13,
-        "111": 13
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": 13,
-          "rank_after": 13,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "000",
-          "after": "010",
-          "rank_before": 13,
-          "rank_after": 13,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "000",
-          "after": "001",
-          "rank_before": 13,
-          "rank_after": 13,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "001",
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-          "rank_before": 13,
-          "rank_after": 13,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "001",
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-          "rank_before": 13,
-          "rank_after": 13,
-          "top5_delta": 0
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-        {
-          "factor": "A",
-          "before": "010",
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-          "rank_before": 13,
-          "rank_after": 13,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
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-          "rank_after": 13,
-          "top5_delta": 0
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-        {
-          "factor": "A",
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-          "after": "111",
-          "rank_before": 13,
-          "rank_after": 13,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "100",
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-          "rank_before": 13,
-          "rank_after": 13,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "100",
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-          "rank_after": 13,
-          "top5_delta": 0
-        },
-        {
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-          "before": "101",
-          "after": "111",
-          "rank_before": 13,
-          "rank_after": 13,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "110",
-          "after": "111",
-          "rank_before": 13,
-          "rank_after": 13,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "Bmem",
-        "Abbreviation": "Unswitched",
-        "Full Name": "Unswitched Memory B cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+) CD27+ CD38lo/- IgD+ IgM+",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000970",
-          "label": "unswitched memory B cell",
-          "expected_target": true,
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-              "CD20+ (1 of 2 alt.)",
-              "CD27+",
-              "CD20+"
-            ],
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-              "CD56-",
-              "CD45+",
-              "CD38:low/CD38- (no axiom on any alt.)",
-              "IGD+",
-              "IGM+",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
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-              "CD27+",
-              "CD20+"
-            ],
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD3-",
-              "CD56-",
-              "CD45+",
-              "CD38:low/CD38- (no axiom on any alt.)",
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-              "IGM+",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
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-            "contradictions": [],
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-              "token": "CD3",
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-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
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-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
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-                "CD3",
-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
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-              "resolution_paths": [
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-                  "via": "exact_alias",
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-                  "tokens": [
-                    "CD3E"
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-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
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-              "CD27+",
-              "CD38- (1 of 2 alt.)",
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-              "IGD+",
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-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
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-              "CD27+",
-              "CD38- (1 of 2 alt.)",
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-              "CD3-",
-              "CD56-",
-              "CD45+",
-              "IGD+",
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-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
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-            "contradictions": [],
-            "hint_bonus": 3,
-            "disqualified": false,
-            "candidate_sources": [
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-            ],
-            "lexical_evidence": null,
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-          "token_changes": [
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-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
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-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
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-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
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-                "CD3",
-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
-              ],
-              "resolution_paths": [
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-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0002112",
-          "label": "B220-positive CD38-negative unswitched memory B cell",
-          "expected_target": false,
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-              "CD45+",
-              "CD20+ (1 of 2 alt.)",
-              "CD27+",
-              "CD38- (1 of 2 alt.)",
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-            ],
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-              "IGM+",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
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-            ],
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-            "rank": 1
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-              "CD20+ (1 of 2 alt.)",
-              "CD27+",
-              "CD38- (1 of 2 alt.)",
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-            ],
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-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
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-            ],
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-            "rank": 1
-          },
-          "token_changes": [
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-              "token": "CD45R",
-              "level": "positive",
-              "action": "removed",
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-            },
-            {
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-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-              "uniprot_mouse": "UniProtKB:P22646",
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-                  "source_token": "CD3E",
-                  "tokens": [
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-                },
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-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            },
-            {
-              "cell": "CL:0002112",
-              "cell_label": "B220-positive CD38-negative unswitched memory B cell",
-              "relation": "RO:0002104",
-              "relation_label": "has plasma membrane part",
-              "sense": "positive",
-              "asserted": "True",
-              "pr": "PR:000001014",
-              "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RABC",
-              "cd_synonym": "CD45R (related); CD45RABC (label)",
-              "uniprot_human": "UniProtKB:P08575-3",
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-              "xrefs": "",
-              "hgnc_id": "HGNC:9666",
-              "hgnc_symbol": "PTPRC",
-              "legacy_tokens": [
-                "CD45R",
-                "CD45RABC"
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-              "enhanced_tokens": [
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-              "resolution_paths": [
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-                  "source_token": "CD45RABC",
-                  "tokens": [
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-                }
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-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0002113",
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-              "CD20+ (1 of 2 alt.)",
-              "CD27+",
-              "CD38- (1 of 2 alt.)",
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-          "rank_after": 33,
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-      ],
-      "source_profile": {
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-        "WB or PBMC": "",
-        "Parent": "Bmem",
-        "Abbreviation": "IgM only",
-        "Full Name": "IgM-only Memory B cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
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-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
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-                  "source_token": "CD3E",
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-                }
-              ]
-            }
-          ]
-        },
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-          ]
-        },
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-              "uniprot_human": "UniProtKB:P08575-3",
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-                }
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-            }
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD38- (1 of 2 alt.)",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD20+ (1 of 2 alt.)",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-            }
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-              ],
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-              "rank_worst": 39
-            }
-          ],
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-          "note": ""
-        },
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-          "cohort": "provisional",
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-          ],
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-            {
-              "cl_id": "CL:0002108",
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-            },
-            {
-              "cl_id": "CL:0002111",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD20+"
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-                "CD56-",
-                "CD38:low/CD38- (no axiom on any alt.)",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD45+",
-                "CD27+",
-                "CD38:low/CD38- (no axiom on any alt.)",
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-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            }
-          ],
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-          "note": ""
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-          "cohort": "provisional",
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-          "match_type": "Exact",
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-          ],
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-                "CD3-",
-                "CD56-",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
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-                "CD3-",
-                "CD56-",
-                "IGD-",
-                "IGM+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            {
-              "cl_id": "CL:0002108",
-              "label": "CD38-negative IgG memory B cell",
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-                "CD27+",
-                "CD38- (1 of 2 alt.)",
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-              ],
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-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "IGD-",
-                "IGM+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002111",
-              "label": "CD38-negative unswitched memory B cell",
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-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
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-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "IGD-",
-                "IGM+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "candidate_sources": [
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-              ],
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-            },
-            {
-              "cl_id": "CL:0002115",
-              "label": "B220-positive CD38-positive unswitched memory B cell",
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD20+"
-              ],
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "label": "IgM memory B cell",
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-                "CD20+"
-              ],
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD27+",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              ],
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-              "rank_worst": 40
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000041/Exact",
-      "subject_id": "SOULCAP:SC000041",
-      "label": "Switched Memory B cell",
-      "cohort": "provisional",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000972"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 14,
-        "001": 14,
-        "010": 14,
-        "011": 14,
-        "100": 14,
-        "101": 14,
-        "110": 14,
-        "111": 14
-      },
-      "factor_edges": [
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-          "factor": "A",
-          "before": "000",
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-        },
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-          "rank_before": 14,
-          "rank_after": 14,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "Bmem",
-        "Abbreviation": "Switched",
-        "Full Name": "Switched Memory B cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+) CD27+ CD38lo/- IgD- IgM-",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000972",
-          "label": "class switched memory B cell",
-          "expected_target": true,
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-            "label": "class switched memory B cell",
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-              "CD20+ (1 of 2 alt.)",
-              "CD27+",
-              "CD20+"
-            ],
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD56-",
-              "CD45+",
-              "CD38:low/CD38- (no axiom on any alt.)",
-              "IGD-",
-              "IGM-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
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-            ],
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-            "rank": 14
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-              "CD27+",
-              "CD20+"
-            ],
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-              "CD3-",
-              "CD56-",
-              "CD45+",
-              "CD38:low/CD38- (no axiom on any alt.)",
-              "IGD-",
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-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
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-          },
-          "token_changes": [
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
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-              "cell": "CL:0000972",
-              "cell_label": "class switched memory B cell",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
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-              "CD56-",
-              "CD38:low/CD38- (no axiom on any alt.)",
-              "IGD-",
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-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            ],
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-            "rank": 5
-          },
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-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
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-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-              ],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD45R",
-              "level": "low",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            }
-          ],
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-              "relation": "RO:0015016",
-              "relation_label": "has low plasma membrane amount",
-              "sense": "low",
-              "asserted": "True",
-              "pr": "PR:000001014",
-              "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RABC",
-              "cd_synonym": "CD45R (related); CD45RABC (label)",
-              "uniprot_human": "UniProtKB:P08575-3",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "HGNC:9666",
-              "hgnc_symbol": "PTPRC",
-              "legacy_tokens": [
-                "CD45R",
-                "CD45RABC"
-              ],
-              "enhanced_tokens": [
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-              ],
-              "resolution_paths": [
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-                  "via": "exact_alias",
-                  "source_token": "CD45RABC",
-                  "tokens": [
-                    "CD45RABC"
-                  ]
-                }
-              ]
-            },
-            {
-              "cell": "CL:0002116",
-              "cell_label": "B220-low CD38-positive unswitched memory B cell",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
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-                "CD3",
-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
-              ],
-              "resolution_paths": [
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-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            }
-          ]
-        }
-      ],
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-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000041",
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-          ],
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-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
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-                "CD56-",
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-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              ],
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-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002111",
-              "label": "CD38-negative unswitched memory B cell",
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-                "CD38- (1 of 2 alt.)",
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-              ],
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-                "CD56-",
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-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002115",
-              "label": "B220-positive CD38-positive unswitched memory B cell",
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-                "CD20+ (1 of 2 alt.)",
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-                "CD20+"
-              ],
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
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-                "CD38:low/CD38- (no axiom on any alt.)",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-              ],
-              "lexical_evidence": null
-            },
-            {
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-                "CD45+ (dim)",
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD56-",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            }
-          ],
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-              "cl_id": "CL:0000972",
-              "label": "class switched memory B cell",
-              "score": 17,
-              "matched": [
-                "CD3-",
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "candidate_sources": [
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-              ],
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-              "rank": 14,
-              "rank_best": 13,
-              "rank_worst": 18
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
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-          "case_id": "provisional/SOULCAP:SC000041/Exact",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000041",
-          "match_type": "Exact",
-          "targets": [
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-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
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-                "CD45+",
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
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-                "CD56-",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "lexical_evidence": null
-            },
-            {
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-              "score": 25,
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-                "CD45+ (dim)",
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
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-                "CD56-",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            },
-            {
-              "cl_id": "CL:0002111",
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
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-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD56-",
-                "CD45+",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002115",
-              "label": "B220-positive CD38-positive unswitched memory B cell",
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-                "CD45+",
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD20+"
-              ],
-              "gaps": [
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-                "CD56-",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            },
-            {
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-                "CD45+ (dim)",
-                "CD20+ (1 of 2 alt.)",
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-              ],
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-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-              ],
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-                "CD45+",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            },
-            {
-              "cl_id": "CL:0002115",
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD20+"
-              ],
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-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            {
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-                "CD20+ (1 of 2 alt.)",
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-                "CD20+"
-              ],
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-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            }
-          ],
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-              "label": "class switched memory B cell",
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-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002111",
-              "label": "CD38-negative unswitched memory B cell",
-              "score": 17,
-              "matched": [
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002115",
-              "label": "B220-positive CD38-positive unswitched memory B cell",
-              "score": 17,
-              "matched": [
-                "CD45+",
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002116",
-              "label": "B220-low CD38-positive unswitched memory B cell",
-              "score": 17,
-              "matched": [
-                "CD45+ (dim)",
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:0000972",
-              "label": "class switched memory B cell",
-              "score": 13,
-              "matched": [
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 14,
-              "rank_best": 13,
-              "rank_worst": 18
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        },
-        "111": {
-          "case_id": "provisional/SOULCAP:SC000041/Exact",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000041",
-          "match_type": "Exact",
-          "targets": [
-            "CL:0000972"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 14,
-          "rank_best": 13,
-          "rank_worst": 18,
-          "missing_targets": [],
-          "candidates": [
-            {
-              "cl_id": "CL:0002112",
-              "label": "B220-positive CD38-negative unswitched memory B cell",
-              "score": 21,
-              "matched": [
-                "CD45+",
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002113",
-              "label": "B220-low CD38-negative unswitched memory B cell",
-              "score": 21,
-              "matched": [
-                "CD45+ (dim)",
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002111",
-              "label": "CD38-negative unswitched memory B cell",
-              "score": 17,
-              "matched": [
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002115",
-              "label": "B220-positive CD38-positive unswitched memory B cell",
-              "score": 17,
-              "matched": [
-                "CD45+",
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002116",
-              "label": "B220-low CD38-positive unswitched memory B cell",
-              "score": 17,
-              "matched": [
-                "CD45+ (dim)",
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:0000972",
-              "label": "class switched memory B cell",
-              "score": 13,
-              "matched": [
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 14,
-              "rank_best": 13,
-              "rank_worst": 18
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000042/Exact",
-      "subject_id": "SOULCAP:SC000042",
-      "label": "IgA-Class Switched B cell",
-      "cohort": "provisional",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000973"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 18,
-        "001": 18,
-        "010": 18,
-        "011": 18,
-        "100": 18,
-        "101": 18,
-        "110": 18,
-        "111": 18
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": 18,
-          "rank_after": 18,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "000",
-          "after": "010",
-          "rank_before": 18,
-          "rank_after": 18,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "000",
-          "after": "001",
-          "rank_before": 18,
-          "rank_after": 18,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "001",
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-          "rank_before": 18,
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-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "001",
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-          "rank_before": 18,
-          "rank_after": 18,
-          "top5_delta": 0
-        },
-        {
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-          "rank_after": 18,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
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-          "top5_delta": 0
-        },
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-          "rank_after": 18,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "100",
-          "after": "110",
-          "rank_before": 18,
-          "rank_after": 18,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "100",
-          "after": "101",
-          "rank_before": 18,
-          "rank_after": 18,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "101",
-          "after": "111",
-          "rank_before": 18,
-          "rank_after": 18,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "110",
-          "after": "111",
-          "rank_before": 18,
-          "rank_after": 18,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "Switched",
-        "Abbreviation": "IgA",
-        "Full Name": "IgA-Class Switched B cell",
-        "synonym": "",
-        "Type of Match": "Surface Only (SO)",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+) CD27+ CD38lo/- IgD- IgM- IgA+ IgG- IgE-",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "How to indicate intracellular detection of IgA, IgE and IgG?",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000973",
-          "label": "IgA memory B cell",
-          "expected_target": true,
-          "before": {
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-            "label": "IgA memory B cell",
-            "score": 16,
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-              "CD3-",
-              "CD20+ (1 of 2 alt.)",
-              "CD27+",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD56-",
-              "CD45+",
-              "CD38:low/CD38- (no axiom on any alt.)",
-              "IGD-",
-              "IGM-",
-              "IGA+",
-              "IGG-",
-              "IGE-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 2,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 18
-          },
-          "after": {
-            "cl_id": "CL:0000973",
-            "label": "IgA memory B cell",
-            "score": 12,
-            "matched": [
-              "CD20+ (1 of 2 alt.)",
-              "CD27+",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD3-",
-              "CD56-",
-              "CD45+",
-              "CD38:low/CD38- (no axiom on any alt.)",
-              "IGD-",
-              "IGM-",
-              "IGA+",
-              "IGG-",
-              "IGE-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 18
-          },
-          "token_changes": [
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0000973",
-              "cell_label": "IgA memory B cell",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
-              "legacy_tokens": [
-                "CD3",
-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0002112",
-          "label": "B220-positive CD38-negative unswitched memory B cell",
-          "expected_target": false,
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-            "cl_id": "CL:0002112",
-            "label": "B220-positive CD38-negative unswitched memory B cell",
-            "score": 24,
-            "matched": [
-              "CD3-",
-              "CD45+",
-              "CD20+ (1 of 2 alt.)",
-              "CD27+",
-              "CD38- (1 of 2 alt.)",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD56-",
-              "IGD-",
-              "IGM-",
-              "IGA+",
-              "IGG-",
-              "IGE-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
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-            "rank": 1
-          },
-          "after": {
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-            "label": "B220-positive CD38-negative unswitched memory B cell",
-            "score": 20,
-            "matched": [
-              "CD45+",
-              "CD20+ (1 of 2 alt.)",
-              "CD27+",
-              "CD38- (1 of 2 alt.)",
-              "CD20+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD3-",
-              "CD56-",
-              "IGD-",
-              "IGM-",
-              "IGA+",
-              "IGG-",
-              "IGE-",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
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-            "rank": 1
-          },
-          "token_changes": [
-            {
-              "token": "CD45R",
-              "level": "positive",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
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-                "IGD-",
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-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            },
-            {
-              "cl_id": "CL:0002120",
-              "label": "CD24-positive CD38-negative IgG-negative class switched memory B cell",
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-                "CD27+",
-                "CD38- (1 of 2 alt.)",
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-            },
-            {
-              "cl_id": "CL:0002121",
-              "label": "CD24-negative CD38-negative IgG-negative class switched memory B cell",
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-                "IGM-",
-                "IGA+",
-                "IGG-",
-                "IGE-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-            }
-          ],
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-              "cl_id": "CL:0000973",
-              "label": "IgA memory B cell",
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-              ],
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-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "IGA+",
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-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null,
-              "rank": 18,
-              "rank_best": 17,
-              "rank_worst": 19
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        },
-        "111": {
-          "case_id": "provisional/SOULCAP:SC000042/Exact",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000042",
-          "match_type": "Exact",
-          "targets": [
-            "CL:0000973"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
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-          "rank_best": 17,
-          "rank_worst": 19,
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-              "cl_id": "CL:0002112",
-              "label": "B220-positive CD38-negative unswitched memory B cell",
-              "score": 20,
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
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-                "CD3-",
-                "CD56-",
-                "IGD-",
-                "IGM-",
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-                "IGG-",
-                "IGE-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "disqualified": false,
-              "candidate_sources": [
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-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002113",
-              "label": "B220-low CD38-negative unswitched memory B cell",
-              "score": 20,
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
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-                "CD20+"
-              ],
-              "gaps": [
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-                "CD3-",
-                "CD56-",
-                "IGD-",
-                "IGM-",
-                "IGA+",
-                "IGG-",
-                "IGE-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002118",
-              "label": "CD38-negative IgG-negative class switched memory B cell",
-              "score": 17,
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "IGD-",
-                "IGM-",
-                "IGA+",
-                "IGG-",
-                "IGE-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002120",
-              "label": "CD24-positive CD38-negative IgG-negative class switched memory B cell",
-              "score": 17,
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
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-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "IGD-",
-                "IGM-",
-                "IGA+",
-                "IGG-",
-                "IGE-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002121",
-              "label": "CD24-negative CD38-negative IgG-negative class switched memory B cell",
-              "score": 17,
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
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-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "IGD-",
-                "IGM-",
-                "IGA+",
-                "IGG-",
-                "IGE-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
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-              "cl_id": "CL:0000973",
-              "label": "IgA memory B cell",
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-                "CD27+",
-                "CD20+"
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "IGA+",
-                "IGG-",
-                "IGE-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
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-              "rank": 18,
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-              "rank_worst": 19
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000043/Exact",
-      "subject_id": "SOULCAP:SC000043",
-      "label": "IgG-Class Switched B cell",
-      "cohort": "provisional",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000979"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 18,
-        "001": 18,
-        "010": 18,
-        "011": 18,
-        "100": 18,
-        "101": 18,
-        "110": 18,
-        "111": 18
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-      "factor_edges": [
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-          "factor": "A",
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-          "rank_after": 18,
-          "top5_delta": 0
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-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "Switched",
-        "Abbreviation": "IgG",
-        "Full Name": "IgG-Class Switched B cell",
-        "synonym": "",
-        "Type of Match": "Surface Only (SO)",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+) CD27+ CD38lo/- IgD- IgM- IgA- IgG+ IgE-",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
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-          "label": "IgG memory B cell",
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-              "CD27+",
-              "CD20+"
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-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            ],
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-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-              "pr_label": "CD3 epsilon",
-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
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-                "CD3",
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-              "enhanced_tokens": [
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-                  "tokens": [
-                    "CD3E"
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-        },
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-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
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-              "CD20+"
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-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
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-              "token": "CD45R",
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-              "conflicting_alias": false
-            },
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-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            },
-            {
-              "cl_id": "CL:0002120",
-              "label": "CD24-positive CD38-negative IgG-negative class switched memory B cell",
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-                "CD27+",
-                "CD38- (1 of 2 alt.)",
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-            },
-            {
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-                "IGM-",
-                "IGA-",
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-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "lexical_evidence": null
-            }
-          ],
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-              "cl_id": "CL:0000979",
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-              ],
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-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "IGA-",
-                "IGG+",
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-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              ],
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-              "rank": 18,
-              "rank_best": 17,
-              "rank_worst": 22
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        },
-        "111": {
-          "case_id": "provisional/SOULCAP:SC000043/Exact",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000043",
-          "match_type": "Exact",
-          "targets": [
-            "CL:0000979"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 18,
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-          "missing_targets": [],
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-              "cl_id": "CL:0002112",
-              "label": "B220-positive CD38-negative unswitched memory B cell",
-              "score": 20,
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-                "CD45+",
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
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-                "CD3-",
-                "CD56-",
-                "IGD-",
-                "IGM-",
-                "IGA-",
-                "IGG+",
-                "IGE-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002113",
-              "label": "B220-low CD38-negative unswitched memory B cell",
-              "score": 20,
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-                "CD45+ (dim)",
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "IGD-",
-                "IGM-",
-                "IGA-",
-                "IGG+",
-                "IGE-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "contradictions": [],
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-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002118",
-              "label": "CD38-negative IgG-negative class switched memory B cell",
-              "score": 18,
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "IGD-",
-                "IGM-",
-                "IGA-",
-                "IGG+",
-                "IGE-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002120",
-              "label": "CD24-positive CD38-negative IgG-negative class switched memory B cell",
-              "score": 18,
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
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-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "IGD-",
-                "IGM-",
-                "IGA-",
-                "IGG+",
-                "IGE-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002121",
-              "label": "CD24-negative CD38-negative IgG-negative class switched memory B cell",
-              "score": 18,
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-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
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-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "IGD-",
-                "IGM-",
-                "IGA-",
-                "IGG+",
-                "IGE-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            }
-          ],
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-              "cl_id": "CL:0000979",
-              "label": "IgG memory B cell",
-              "score": 12,
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-                "CD27+",
-                "CD20+"
-              ],
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "IGA-",
-                "IGG+",
-                "IGE-",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "candidate_sources": [
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-              ],
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-              "rank": 18,
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-              "rank_worst": 22
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000044/Exact",
-      "subject_id": "SOULCAP:SC000044",
-      "label": "IgE-Class Switched B cell",
-      "cohort": "provisional",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000948"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 17,
-        "001": 17,
-        "010": 17,
-        "011": 17,
-        "100": 17,
-        "101": 17,
-        "110": 17,
-        "111": 17
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-      "factor_edges": [
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-          "factor": "A",
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-          "after": "100",
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-          "top5_delta": 0
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-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "Switched",
-        "Abbreviation": "IgE",
-        "Full Name": "IgE-Class Switched B cell",
-        "synonym": "",
-        "Type of Match": "Surface Only (SO)",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+) CD27+ CD38lo/- IgD- IgM- IgA- IgG- IgE+",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
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-          "label": "IgE memory B cell",
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-              "CD20+"
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-              "CD56-",
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-              "CD38:low/CD38- (no axiom on any alt.)",
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-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
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-            ],
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-              "CD3-",
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-              "CD16-",
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-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-              "relation_label": "lacks_plasma_membrane_part",
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-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
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-                "CD3",
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-              ],
-              "enhanced_tokens": [
-                "CD3E"
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-              "resolution_paths": [
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-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
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-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
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-                }
-              ]
-            }
-          ]
-        },
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-              "IGG-",
-              "IGE+",
-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
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-              "CD20+ (1 of 2 alt.)",
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-              "CD20+"
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-              "CD127-",
-              "CD16-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD123-"
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-              "token": "CD45R",
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-            },
-            {
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-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-              "cl_id": "CL:0002118",
-              "label": "CD38-negative IgG-negative class switched memory B cell",
-              "score": 17,
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-                "CD27+",
-                "CD38- (1 of 2 alt.)",
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-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "IGD-",
-                "IGM-",
-                "IGA-",
-                "IGG-",
-                "IGE+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "disqualified": false,
-              "candidate_sources": [
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-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002120",
-              "label": "CD24-positive CD38-negative IgG-negative class switched memory B cell",
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
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-                "CD45+",
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-                "IGM-",
-                "IGA-",
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-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "lexical_evidence": null
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-            {
-              "cl_id": "CL:0002121",
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-                "CD45+",
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-                "IGM-",
-                "IGA-",
-                "IGG-",
-                "IGE+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "disqualified": false,
-              "candidate_sources": [
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-              "lexical_evidence": null
-            }
-          ],
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-              "cl_id": "CL:0000948",
-              "label": "IgE memory B cell",
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-                "CD20+"
-              ],
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-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "IGA-",
-                "IGG-",
-                "IGE+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "lexical_evidence": null,
-              "rank": 17,
-              "rank_best": 17,
-              "rank_worst": 19
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        },
-        "111": {
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-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000044",
-          "match_type": "Exact",
-          "targets": [
-            "CL:0000948"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 17,
-          "rank_best": 17,
-          "rank_worst": 19,
-          "missing_targets": [],
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-              "cl_id": "CL:0002112",
-              "label": "B220-positive CD38-negative unswitched memory B cell",
-              "score": 20,
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-                "CD45+",
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
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-                "CD3-",
-                "CD56-",
-                "IGD-",
-                "IGM-",
-                "IGA-",
-                "IGG-",
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-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "candidate_sources": [
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-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002113",
-              "label": "B220-low CD38-negative unswitched memory B cell",
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-              "matched": [
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
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-                "CD3-",
-                "CD56-",
-                "IGD-",
-                "IGM-",
-                "IGA-",
-                "IGG-",
-                "IGE+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002118",
-              "label": "CD38-negative IgG-negative class switched memory B cell",
-              "score": 17,
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "IGD-",
-                "IGM-",
-                "IGA-",
-                "IGG-",
-                "IGE+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002120",
-              "label": "CD24-positive CD38-negative IgG-negative class switched memory B cell",
-              "score": 17,
-              "matched": [
-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "IGD-",
-                "IGM-",
-                "IGA-",
-                "IGG-",
-                "IGE+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002121",
-              "label": "CD24-negative CD38-negative IgG-negative class switched memory B cell",
-              "score": 17,
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-                "CD20+ (1 of 2 alt.)",
-                "CD27+",
-                "CD38- (1 of 2 alt.)",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "IGD-",
-                "IGM-",
-                "IGA-",
-                "IGG-",
-                "IGE+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
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-              "lexical_evidence": null
-            }
-          ],
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-              "cl_id": "CL:0000948",
-              "label": "IgE memory B cell",
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-                "CD27+",
-                "CD20+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD3-",
-                "CD56-",
-                "CD45+",
-                "CD38:low/CD38- (no axiom on any alt.)",
-                "IGD-",
-                "IGM-",
-                "IGA-",
-                "IGG-",
-                "IGE+",
-                "CD127-",
-                "CD16-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD123-"
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
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-              "rank": 17,
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-              "rank_worst": 19
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000045/Exact",
-      "subject_id": "SOULCAP:SC000045",
-      "label": "T lymphocyte",
-      "cohort": "provisional",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000084"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": null,
-        "001": null,
-        "010": null,
-        "011": null,
-        "100": null,
-        "101": null,
-        "110": null,
-        "111": null
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-      "factor_edges": [
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-          "factor": "A",
-          "before": "000",
-          "after": "100",
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-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
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-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "T cell",
-        "Full Name": "T lymphocyte",
-        "synonym": "T lymph",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000097",
-          "label": "mast cell",
-          "expected_target": false,
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
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-              "CD45+",
-              "CD3+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
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-              "asserted": "True",
-              "pr": "PR:000007431",
-              "pr_label": "high affinity immunoglobulin epsilon receptor subunit alpha",
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-              "uniprot_human": "UniProtKB:P12319",
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
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-              "CD3+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
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-              "sense": "high",
-              "asserted": "False",
-              "pr": "PR:000007431",
-              "pr_label": "high affinity immunoglobulin epsilon receptor subunit alpha",
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-              "uniprot_human": "UniProtKB:P12319",
-              "uniprot_mouse": "UniProtKB:P20489",
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-                "FCER1A"
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-        },
-        {
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-              "CD123-"
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD3+",
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-              ],
-              "gaps": [
-                "CD123-",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002353",
-              "label": "fetal liver hematopoietic progenitor cell",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD45+"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001021",
-              "label": "CD34-positive, CD38-positive common lymphoid progenitor",
-              "score": 12,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD45+"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 0,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [],
-          "status": "target_not_in_index",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000046/Broad",
-      "subject_id": "SOULCAP:SC000046",
-      "label": "CD56+ T cell",
-      "cohort": "provisional",
-      "match_type": "Broad",
-      "targets": [
-        "CL:4052055"
-      ],
-      "outcome": "regressed",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 34,
-        "001": 34,
-        "010": 87,
-        "011": 87,
-        "100": 34,
-        "101": 34,
-        "110": 87,
-        "111": 87
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": 34,
-          "rank_after": 34,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "000",
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-          "rank_before": 34,
-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "000",
-          "after": "001",
-          "rank_before": 34,
-          "rank_after": 34,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "001",
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-          "rank_after": 34,
-          "top5_delta": 0
-        },
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-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "010",
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-          "rank_before": 87,
-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "010",
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-          "rank_before": 87,
-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "011",
-          "after": "111",
-          "rank_before": 87,
-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
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-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "100",
-          "after": "101",
-          "rank_before": 34,
-          "rank_after": 34,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "101",
-          "after": "111",
-          "rank_before": 34,
-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "110",
-          "after": "111",
-          "rank_before": 87,
-          "rank_after": 87,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "T cell",
-        "Abbreviation": "CD56+ T cell",
-        "Full Name": "CD56+ T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ CD56+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "Incorrectly called NKT-like or NKT",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000097",
-          "label": "mast cell",
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "CD16-"
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
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-              "CD3+",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
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-            "disqualified": false,
-            "candidate_sources": [
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-            "rank": 39
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-              "token": "FCER1A",
-              "level": "high",
-              "action": "added",
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-                  "marker_token": "FCER1A",
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-                  "protein_resolution": "allow",
-                  "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
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-                  "registry_sha256": "0ffb585d4dc904f1d78456c5f8ae18e3d3c7e53e0a0addf4306a7654eec5884a"
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-              ],
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-            }
-          ],
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-              "cell_label": "mast cell",
-              "relation": "RO:0015015",
-              "relation_label": "has high plasma membrane amount",
-              "sense": "high",
-              "asserted": "True",
-              "pr": "PR:000007431",
-              "pr_label": "high affinity immunoglobulin epsilon receptor subunit alpha",
-              "cd_synonym": "",
-              "uniprot_human": "UniProtKB:P12319",
-              "uniprot_mouse": "UniProtKB:P20489",
-              "xrefs": "IUPHARobj:2933",
-              "hgnc_id": "HGNC:3609",
-              "hgnc_symbol": "FCER1A",
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-                "FCER1A"
-              ],
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-                {
-                  "via": "pro_id",
-                  "pr": "PR:000007431",
-                  "tokens": [
-                    "FCER1A"
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-              ]
-            }
-          ]
-        },
-        {
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-          "label": "connective tissue type mast cell",
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-            "label": "connective tissue type mast cell",
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-              "CD123-"
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
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-            "candidate_sources": [
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-            ],
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-            "rank": 3
-          },
-          "after": {
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-            "label": "connective tissue type mast cell",
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-              "CD123-"
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
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-            ],
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-            "rank": 40
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-              "token": "FCER1A",
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-              "action": "added",
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-                  "representation": "single_protein",
-                  "protein_resolution": "allow",
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-          ],
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-              "relation_label": "has high plasma membrane amount",
-              "sense": "high",
-              "asserted": "False",
-              "pr": "PR:000007431",
-              "pr_label": "high affinity immunoglobulin epsilon receptor subunit alpha",
-              "cd_synonym": "",
-              "uniprot_human": "UniProtKB:P12319",
-              "uniprot_mouse": "UniProtKB:P20489",
-              "xrefs": "IUPHARobj:2933",
-              "hgnc_id": "HGNC:3609",
-              "hgnc_symbol": "FCER1A",
-              "legacy_tokens": [],
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-                "FCER1A"
-              ],
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-                  "tokens": [
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-            }
-          ]
-        },
-        {
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-          "label": "mucosal type mast cell",
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-            "label": "mucosal type mast cell",
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-              "CD123-"
-            ],
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
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-            "rank": 4
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-              "CD123-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
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-            ],
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-            "rank": 41
-          },
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-              ],
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-            }
-          ],
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-              "sense": "high",
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-              "uniprot_human": "UniProtKB:P12319",
-              "uniprot_mouse": "UniProtKB:P20489",
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-              "hgnc_id": "HGNC:3609",
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-              "legacy_tokens": [],
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-                "FCER1A"
-              ],
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-                  "tokens": [
-                    "FCER1A"
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-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000570",
-          "label": "parafollicular cell",
-          "expected_target": false,
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-            "label": "parafollicular cell",
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-            "matched": [
-              "CD56+"
-            ],
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
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-            ],
-            "lexical_evidence": null,
-            "rank": 5
-          },
-          "after": {
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-            "label": "parafollicular cell",
-            "score": 5,
-            "matched": [
-              "CD56+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
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-            ],
-            "lexical_evidence": null,
-            "rank": 42
-          },
-          "token_changes": [],
-          "relevant_axioms": []
-        },
-        {
-          "cl_id": "CL:0000623",
-          "label": "natural killer cell",
-          "expected_target": false,
-          "before": {
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-            "label": "natural killer cell",
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-            "matched": [
-              "CD14- (1 of 3 alt.)",
-              "CD19- (1 of 2 alt.)"
-            ],
-            "gaps": [
-              "CD123-",
-              "CD45+",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [
-              "CD3+"
-            ],
-            "hint_bonus": 1,
-            "disqualified": true,
-            "candidate_sources": [
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-            ],
-            "lexical_evidence": null,
-            "rank": 503
-          },
-          "after": {
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-            "label": "natural killer cell",
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-            "matched": [
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-              "CD19- (1 of 2 alt.)"
-            ],
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-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
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-            ],
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-            "rank": 5
-          },
-          "token_changes": [
-            {
-              "token": "CD3",
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-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-              ],
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-            }
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-              "pr_label": "CD3 epsilon",
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-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
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-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
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-                "CD3",
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-              ],
-              "enhanced_tokens": [
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-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
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-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "expected_target": false,
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-            "label": "CD16-negative, CD56-bright natural killer cell, human",
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-            "matched": [
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-              "CD56+ (hi)",
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-              "CD45+",
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-            "hint_bonus": 1,
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-          "after": "110",
-          "rank_before": 42,
-          "rank_after": 127,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "100",
-          "after": "101",
-          "rank_before": 42,
-          "rank_after": 42,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "101",
-          "after": "111",
-          "rank_before": 42,
-          "rank_after": 127,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "110",
-          "after": "111",
-          "rank_before": 127,
-          "rank_after": 127,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "CD4+ T cell",
-        "Abbreviation": "CD56+ CD4 T cell",
-        "Full Name": "CD56+ CD4 T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ CD4+ CD8+ CD56+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "Incorrectly called NKT-like or NKT",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000809",
-          "label": "double-positive, alpha-beta thymocyte",
-          "expected_target": false,
-          "before": {
-            "cl_id": "CL:0000809",
-            "label": "double-positive, alpha-beta thymocyte",
-            "score": 8,
-            "matched": [
-              "CD4+",
-              "CD8+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 0,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 4
-          },
-          "after": {
-            "cl_id": "CL:0000809",
-            "label": "double-positive, alpha-beta thymocyte",
-            "score": 4,
-            "matched": [
-              "CD4+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "CD8+",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 0,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 128
-          },
-          "token_changes": [
-            {
-              "token": "CD8",
-              "level": "positive",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD8",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
-                  "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0000809",
-              "cell_label": "double-positive, alpha-beta thymocyte",
-              "relation": "BFO:0000051",
-              "relation_label": "has part",
-              "sense": "positive",
-              "asserted": "False",
-              "pr": "PR:000001084",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
-              "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-              "uniprot_human": "UniProtKB:P01732",
-              "uniprot_mouse": "UniProtKB:P01731",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
-              "legacy_tokens": [
-                "CD8",
-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            },
-            {
-              "cell": "CL:0000809",
-              "cell_label": "double-positive, alpha-beta thymocyte",
-              "relation": "RO:0002104",
-              "relation_label": "has plasma membrane part",
-              "sense": "positive",
-              "asserted": "True",
-              "pr": "PR:000025402",
-              "pr_label": "T cell receptor co-receptor CD8",
-              "cd_synonym": "CD8 (label)",
-              "uniprot_human": "",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "",
-              "hgnc_symbol": "",
-              "legacy_tokens": [
-                "CD8"
-              ],
-              "enhanced_tokens": [],
-              "resolution_paths": []
-            },
-            {
-              "cell": "CL:0000809",
-              "cell_label": "double-positive, alpha-beta thymocyte",
-              "relation": "BFO:0000051",
-              "relation_label": "has part",
-              "sense": "positive",
-              "asserted": "False",
-              "pr": "PR:000025403",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain isoform 1",
-              "cd_synonym": "CD8 (label); CD8A (exact)",
-              "uniprot_human": "UniProtKB:P01732-1",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
-              "legacy_tokens": [
-                "CD8",
-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000895",
-          "label": "naive thymus-derived CD4-positive, alpha-beta T cell",
-          "expected_target": false,
-          "before": {
-            "cl_id": "CL:0000895",
-            "label": "naive thymus-derived CD4-positive, alpha-beta T cell",
-            "score": 8,
-            "matched": [
-              "CD45+",
-              "CD4+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD3+",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [
-              "CD8+"
-            ],
-            "hint_bonus": 2,
-            "disqualified": true,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 401
-          },
-          "after": {
-            "cl_id": "CL:0000895",
-            "label": "naive thymus-derived CD4-positive, alpha-beta T cell",
-            "score": 10,
-            "matched": [
-              "CD45+",
-              "CD4+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD3+",
-              "CD8+",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 2,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 5
-          },
-          "token_changes": [
-            {
-              "token": "CD8",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD8",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
-                  "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0000895",
-              "cell_label": "naive thymus-derived CD4-positive, alpha-beta T cell",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000025402",
-              "pr_label": "T cell receptor co-receptor CD8",
-              "cd_synonym": "CD8 (label)",
-              "uniprot_human": "",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "",
-              "hgnc_symbol": "",
-              "legacy_tokens": [
-                "CD8"
-              ],
-              "enhanced_tokens": [],
-              "resolution_paths": []
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "expected_target": false,
-          "before": {
-            "cl_id": "CL:0000938",
-            "label": "CD16-negative, CD56-bright natural killer cell, human",
-            "score": 13,
-            "matched": [
-              "CD14- (1 of 3 alt.)",
-              "CD19- (1 of 2 alt.)",
-              "CD56+ (hi)",
-              "CD16-"
-            ],
-            "gaps": [
-              "CD123-",
-              "CD45+",
-              "CD4+",
-              "CD8+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)"
-            ],
-            "contradictions": [
-              "CD3+"
-            ],
-            "hint_bonus": 1,
-            "disqualified": true,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 395
-          },
-          "after": {
-            "cl_id": "CL:0000938",
-            "label": "CD16-negative, CD56-bright natural killer cell, human",
-            "score": 13,
-            "matched": [
-              "CD14- (1 of 3 alt.)",
-              "CD19- (1 of 2 alt.)",
-              "CD56+ (hi)"
-            ],
-            "gaps": [
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "CD4+",
-              "CD8+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 1
-          },
-          "token_changes": [
-            {
-              "token": "CD16",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD16",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD16",
-                  "registry_sha256": "a7a9cad253db0e9a36b0bf2b5efa04ded5e314c01b3166d19623519f6a3f43e7"
-                }
-              ],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0000938",
-              "cell_label": "CD16-negative, CD56-bright natural killer cell, human",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
-              "legacy_tokens": [
-                "CD3",
-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            },
-            {
-              "cell": "CL:0000938",
-              "cell_label": "CD16-negative, CD56-bright natural killer cell, human",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "True",
-              "pr": "PR:000001483",
-              "pr_label": "low affinity immunoglobulin gamma Fc region receptor III",
-              "cd_synonym": "CD16 (exact)",
-              "uniprot_human": "",
-              "uniprot_mouse": "UniProtKB:P08508",
-              "xrefs": "",
-              "hgnc_id": "HGNC:3619",
-              "hgnc_symbol": "FCGR3A",
-              "legacy_tokens": [
-                "CD16"
-              ],
-              "enhanced_tokens": [],
-              "resolution_paths": []
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000939",
-          "label": "CD16-positive, CD56-dim natural killer cell, human",
-          "expected_target": false,
-          "before": {
-            "cl_id": "CL:0000939",
-            "label": "CD16-positive, CD56-dim natural killer cell, human",
-            "score": 10,
-            "matched": [
-              "CD14- (1 of 3 alt.)",
-              "CD19- (1 of 2 alt.)",
-              "CD56+ (dim)"
-            ],
-            "gaps": [
-              "CD123-",
-              "CD45+",
-              "CD4+",
-              "CD8+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)"
-            ],
-            "contradictions": [
-              "CD3+",
-              "CD16-"
-            ],
-            "hint_bonus": 1,
-            "disqualified": true,
-            "candidate_sources": [
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-            ],
-            "lexical_evidence": null,
-            "rank": 398
-          },
-          "after": {
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-            "label": "CD16-positive, CD56-dim natural killer cell, human",
-            "score": 13,
-            "matched": [
-              "CD14- (1 of 3 alt.)",
-              "CD19- (1 of 2 alt.)",
-              "CD56+ (dim)"
-            ],
-            "gaps": [
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "CD4+",
-              "CD8+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
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-            ],
-            "lexical_evidence": null,
-            "rank": 2
-          },
-          "token_changes": [
-            {
-              "token": "CD16",
-              "level": "positive",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD16",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD16",
-                  "registry_sha256": "a7a9cad253db0e9a36b0bf2b5efa04ded5e314c01b3166d19623519f6a3f43e7"
-                }
-              ],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0000939",
-              "cell_label": "CD16-positive, CD56-dim natural killer cell, human",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
-              "legacy_tokens": [
-                "CD3",
-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            },
-            {
-              "cell": "CL:0000939",
-              "cell_label": "CD16-positive, CD56-dim natural killer cell, human",
-              "relation": "RO:0002104",
-              "relation_label": "has plasma membrane part",
-              "sense": "positive",
-              "asserted": "True",
-              "pr": "PR:000001483",
-              "pr_label": "low affinity immunoglobulin gamma Fc region receptor III",
-              "cd_synonym": "CD16 (exact)",
-              "uniprot_human": "",
-              "uniprot_mouse": "UniProtKB:P08508",
-              "xrefs": "",
-              "hgnc_id": "HGNC:3619",
-              "hgnc_symbol": "FCGR3A",
-              "legacy_tokens": [
-                "CD16"
-              ],
-              "enhanced_tokens": [],
-              "resolution_paths": []
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0002039",
-          "label": "immature NK T cell stage I, mouse",
-          "expected_target": false,
-          "before": {
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-            "label": "immature NK T cell stage I, mouse",
-            "score": 9,
-            "matched": [
-              "CD4+ (dim)",
-              "CD8+ (dim)"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 1
-          },
-          "after": {
-            "cl_id": "CL:0002039",
-            "label": "immature NK T cell stage I, mouse",
-            "score": 5,
-            "matched": [
-              "CD4+ (dim)"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "CD8+",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
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-                  "tokens": [
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-                },
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-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
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-              "CD45+",
-              "CD3+",
-              "CD4+",
-              "CD8+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
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-            "candidate_sources": [
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-            "rank": 42
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-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "CD4+",
-              "CD8+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
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-            "candidate_sources": [
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-            "lexical_evidence": null,
-            "rank": 127
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-          "token_changes": [],
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-      ],
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-          "subject_id": "SOULCAP:SC000047",
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-          "evidence_reference": "mappings/curated_mappings.tsv",
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-                "CD8+ (dim)"
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-              "gaps": [
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-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "CD56+",
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-                "CD3+",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            },
-            {
-              "cl_id": "CL:0000809",
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-                "CD8+"
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-                "CD19-/CD20- (no axiom on any alt.)",
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-                "CD45+",
-                "CD3+",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-            },
-            {
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-              ],
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-                "CD45+",
-                "CD3+",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              ],
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-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "rank_worst": 42
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-                "CD56+",
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-                "CD3+",
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-                "CD3+",
-                "CD56+",
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-                "CD45+",
-                "CD3+",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 0,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:4052055",
-              "label": "mature NK T cell, human",
-              "score": 5,
-              "matched": [
-                "CD56+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 42,
-              "rank_best": 13,
-              "rank_worst": 42
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        },
-        "110": {
-          "case_id": "provisional/SOULCAP:SC000047/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000047",
-          "match_type": "Broad",
-          "targets": [
-            "CL:4052055"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 127,
-          "rank_best": 67,
-          "rank_worst": 127,
-          "missing_targets": [],
-          "candidates": [
-            {
-              "cl_id": "CL:0000938",
-              "label": "CD16-negative, CD56-bright natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (hi)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000939",
-              "label": "CD16-positive, CD56-dim natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (dim)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002338",
-              "label": "CD56-positive, CD161-positive immature natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002343",
-              "label": "decidual natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (hi)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000895",
-              "label": "naive thymus-derived CD4-positive, alpha-beta T cell",
-              "score": 10,
-              "matched": [
-                "CD45+",
-                "CD4+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "CD8+",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 2,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:4052055",
-              "label": "mature NK T cell, human",
-              "score": 5,
-              "matched": [
-                "CD56+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 127,
-              "rank_best": 67,
-              "rank_worst": 127
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        },
-        "111": {
-          "case_id": "provisional/SOULCAP:SC000047/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000047",
-          "match_type": "Broad",
-          "targets": [
-            "CL:4052055"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 127,
-          "rank_best": 67,
-          "rank_worst": 127,
-          "missing_targets": [],
-          "candidates": [
-            {
-              "cl_id": "CL:0000938",
-              "label": "CD16-negative, CD56-bright natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (hi)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000939",
-              "label": "CD16-positive, CD56-dim natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (dim)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002338",
-              "label": "CD56-positive, CD161-positive immature natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002343",
-              "label": "decidual natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (hi)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000895",
-              "label": "naive thymus-derived CD4-positive, alpha-beta T cell",
-              "score": 10,
-              "matched": [
-                "CD45+",
-                "CD4+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "CD8+",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 2,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:4052055",
-              "label": "mature NK T cell, human",
-              "score": 5,
-              "matched": [
-                "CD56+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 127,
-              "rank_best": 67,
-              "rank_worst": 127
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000048/Broad",
-      "subject_id": "SOULCAP:SC000048",
-      "label": "CD56+ CD8 T cell",
-      "cohort": "provisional",
-      "match_type": "Broad",
-      "targets": [
-        "CL:4052055"
-      ],
-      "outcome": "regressed",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 63,
-        "001": 63,
-        "010": 119,
-        "011": 119,
-        "100": 63,
-        "101": 63,
-        "110": 119,
-        "111": 119
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": 63,
-          "rank_after": 63,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "000",
-          "after": "010",
-          "rank_before": 63,
-          "rank_after": 119,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "000",
-          "after": "001",
-          "rank_before": 63,
-          "rank_after": 63,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "001",
-          "after": "101",
-          "rank_before": 63,
-          "rank_after": 63,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "001",
-          "after": "011",
-          "rank_before": 63,
-          "rank_after": 119,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "010",
-          "after": "110",
-          "rank_before": 119,
-          "rank_after": 119,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "010",
-          "after": "011",
-          "rank_before": 119,
-          "rank_after": 119,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "011",
-          "after": "111",
-          "rank_before": 119,
-          "rank_after": 119,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "100",
-          "after": "110",
-          "rank_before": 63,
-          "rank_after": 119,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "100",
-          "after": "101",
-          "rank_before": 63,
-          "rank_after": 63,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "101",
-          "after": "111",
-          "rank_before": 63,
-          "rank_after": 119,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "110",
-          "after": "111",
-          "rank_before": 119,
-          "rank_after": 119,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "CD8+ T cell",
-        "Abbreviation": "CD56+ CD8 T cell",
-        "Full Name": "CD56+ CD8 T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ CD4- CD8+ CD56+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "Incorrectly called NKT-like or NKT",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000625",
-          "label": "CD8-positive, alpha-beta T cell",
-          "expected_target": false,
-          "before": {
-            "cl_id": "CL:0000625",
-            "label": "CD8-positive, alpha-beta T cell",
-            "score": 10,
-            "matched": [
-              "CD4-",
-              "CD8+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 2,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 4
-          },
-          "after": {
-            "cl_id": "CL:0000625",
-            "label": "CD8-positive, alpha-beta T cell",
-            "score": 6,
-            "matched": [
-              "CD4-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "CD8+",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 2,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 41
-          },
-          "token_changes": [
-            {
-              "token": "CD8",
-              "level": "positive",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD8",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
-                  "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0000625",
-              "cell_label": "CD8-positive, alpha-beta T cell",
-              "relation": "BFO:0000051",
-              "relation_label": "has part",
-              "sense": "positive",
-              "asserted": "False",
-              "pr": "PR:000001084",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
-              "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-              "uniprot_human": "UniProtKB:P01732",
-              "uniprot_mouse": "UniProtKB:P01731",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
-              "legacy_tokens": [
-                "CD8",
-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            },
-            {
-              "cell": "CL:0000625",
-              "cell_label": "CD8-positive, alpha-beta T cell",
-              "relation": "RO:0002104",
-              "relation_label": "has plasma membrane part",
-              "sense": "positive",
-              "asserted": "True",
-              "pr": "PR:000025402",
-              "pr_label": "T cell receptor co-receptor CD8",
-              "cd_synonym": "CD8 (label)",
-              "uniprot_human": "",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "",
-              "hgnc_symbol": "",
-              "legacy_tokens": [
-                "CD8"
-              ],
-              "enhanced_tokens": [],
-              "resolution_paths": []
-            },
-            {
-              "cell": "CL:0000625",
-              "cell_label": "CD8-positive, alpha-beta T cell",
-              "relation": "BFO:0000051",
-              "relation_label": "has part",
-              "sense": "positive",
-              "asserted": "False",
-              "pr": "PR:000025403",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain isoform 1",
-              "cd_synonym": "CD8 (label); CD8A (exact)",
-              "uniprot_human": "UniProtKB:P01732-1",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
-              "legacy_tokens": [
-                "CD8",
-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000794",
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-      "subject_id": "SOULCAP:SC000049",
-      "label": "CD56+ alpha/beta T cell",
-      "cohort": "provisional",
-      "match_type": "Broad",
-      "targets": [
-        "CL:4052055"
-      ],
-      "outcome": "regressed",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 34,
-        "001": 34,
-        "010": 87,
-        "011": 87,
-        "100": 34,
-        "101": 34,
-        "110": 87,
-        "111": 87
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": 34,
-          "rank_after": 34,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "000",
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-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
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-        },
-        {
-          "factor": "A",
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-          "rank_after": 87,
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-        },
-        {
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-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
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-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "100",
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-          "rank_before": 34,
-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "100",
-          "after": "101",
-          "rank_before": 34,
-          "rank_after": 34,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "101",
-          "after": "111",
-          "rank_before": 34,
-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "110",
-          "after": "111",
-          "rank_before": 87,
-          "rank_after": 87,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRab",
-        "Abbreviation": "CD56+ TCRab",
-        "Full Name": "CD56+ alpha/beta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) CD56+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "Incorrectly called NKT-like or NKT",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
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-          "cl_id": "CL:0000097",
-          "label": "mast cell",
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-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
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-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
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-            "rank": 2
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
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-            "lexical_evidence": null,
-            "rank": 39
-          },
-          "token_changes": [
-            {
-              "token": "FCER1A",
-              "level": "high",
-              "action": "added",
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-                  "marker_token": "FCER1A",
-                  "representation": "single_protein",
-                  "protein_resolution": "allow",
-                  "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#FceR1a",
-                  "registry_sha256": "0ffb585d4dc904f1d78456c5f8ae18e3d3c7e53e0a0addf4306a7654eec5884a"
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-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0000097",
-              "cell_label": "mast cell",
-              "relation": "RO:0015015",
-              "relation_label": "has high plasma membrane amount",
-              "sense": "high",
-              "asserted": "True",
-              "pr": "PR:000007431",
-              "pr_label": "high affinity immunoglobulin epsilon receptor subunit alpha",
-              "cd_synonym": "",
-              "uniprot_human": "UniProtKB:P12319",
-              "uniprot_mouse": "UniProtKB:P20489",
-              "xrefs": "IUPHARobj:2933",
-              "hgnc_id": "HGNC:3609",
-              "hgnc_symbol": "FCER1A",
-              "legacy_tokens": [],
-              "enhanced_tokens": [
-                "FCER1A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000007431",
-                  "tokens": [
-                    "FCER1A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000484",
-          "label": "connective tissue type mast cell",
-          "expected_target": false,
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-            "cl_id": "CL:0000484",
-            "label": "connective tissue type mast cell",
-            "score": 5,
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-              "CD123-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 3
-          },
-          "after": {
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-            "label": "connective tissue type mast cell",
-            "score": 5,
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-              "CD123-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 40
-          },
-          "token_changes": [
-            {
-              "token": "FCER1A",
-              "level": "high",
-              "action": "added",
-              "policy_records": [
-                {
-                  "marker_token": "FCER1A",
-                  "representation": "single_protein",
-                  "protein_resolution": "allow",
-                  "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#FceR1a",
-                  "registry_sha256": "0ffb585d4dc904f1d78456c5f8ae18e3d3c7e53e0a0addf4306a7654eec5884a"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
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-              "cell": "CL:0000484",
-              "cell_label": "connective tissue type mast cell",
-              "relation": "RO:0015015",
-              "relation_label": "has high plasma membrane amount",
-              "sense": "high",
-              "asserted": "False",
-              "pr": "PR:000007431",
-              "pr_label": "high affinity immunoglobulin epsilon receptor subunit alpha",
-              "cd_synonym": "",
-              "uniprot_human": "UniProtKB:P12319",
-              "uniprot_mouse": "UniProtKB:P20489",
-              "xrefs": "IUPHARobj:2933",
-              "hgnc_id": "HGNC:3609",
-              "hgnc_symbol": "FCER1A",
-              "legacy_tokens": [],
-              "enhanced_tokens": [
-                "FCER1A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000007431",
-                  "tokens": [
-                    "FCER1A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000485",
-          "label": "mucosal type mast cell",
-          "expected_target": false,
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-            "label": "mucosal type mast cell",
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-              "CD123-"
-            ],
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 4
-          },
-          "after": {
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-            "label": "mucosal type mast cell",
-            "score": 5,
-            "matched": [
-              "CD123-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
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-            ],
-            "lexical_evidence": null,
-            "rank": 41
-          },
-          "token_changes": [
-            {
-              "token": "FCER1A",
-              "level": "high",
-              "action": "added",
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-                {
-                  "marker_token": "FCER1A",
-                  "representation": "single_protein",
-                  "protein_resolution": "allow",
-                  "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
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-                  "registry_sha256": "0ffb585d4dc904f1d78456c5f8ae18e3d3c7e53e0a0addf4306a7654eec5884a"
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-              ],
-              "conflicting_alias": false
-            }
-          ],
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-            {
-              "cell": "CL:0000485",
-              "cell_label": "mucosal type mast cell",
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-              "sense": "high",
-              "asserted": "False",
-              "pr": "PR:000007431",
-              "pr_label": "high affinity immunoglobulin epsilon receptor subunit alpha",
-              "cd_synonym": "",
-              "uniprot_human": "UniProtKB:P12319",
-              "uniprot_mouse": "UniProtKB:P20489",
-              "xrefs": "IUPHARobj:2933",
-              "hgnc_id": "HGNC:3609",
-              "hgnc_symbol": "FCER1A",
-              "legacy_tokens": [],
-              "enhanced_tokens": [
-                "FCER1A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000007431",
-                  "tokens": [
-                    "FCER1A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000570",
-          "label": "parafollicular cell",
-          "expected_target": false,
-          "before": {
-            "cl_id": "CL:0000570",
-            "label": "parafollicular cell",
-            "score": 5,
-            "matched": [
-              "CD56+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 5
-          },
-          "after": {
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-            "label": "parafollicular cell",
-            "score": 5,
-            "matched": [
-              "CD56+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 42
-          },
-          "token_changes": [],
-          "relevant_axioms": []
-        },
-        {
-          "cl_id": "CL:0000623",
-          "label": "natural killer cell",
-          "expected_target": false,
-          "before": {
-            "cl_id": "CL:0000623",
-            "label": "natural killer cell",
-            "score": 7,
-            "matched": [
-              "CD14- (1 of 3 alt.)",
-              "CD19- (1 of 2 alt.)"
-            ],
-            "gaps": [
-              "CD123-",
-              "CD45+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [
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-            "hint_bonus": 1,
-            "disqualified": true,
-            "candidate_sources": [
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-            ],
-            "lexical_evidence": null,
-            "rank": 503
-          },
-          "after": {
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-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            "disqualified": false,
-            "candidate_sources": [
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-            ],
-            "lexical_evidence": null,
-            "rank": 5
-          },
-          "token_changes": [
-            {
-              "token": "CD3",
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-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-              ],
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-          ],
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-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
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-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
-              "legacy_tokens": [
-                "CD3",
-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "expected_target": false,
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-            "label": "CD16-negative, CD56-bright natural killer cell, human",
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-              "CD19- (1 of 2 alt.)",
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-              "CD16-"
-            ],
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-              "CD45+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
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-              "CD15-/CD66B- (no axiom on any alt.)"
-            ],
-            "contradictions": [
-              "CD3+"
-            ],
-            "hint_bonus": 1,
-            "disqualified": true,
-            "candidate_sources": [
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-            ],
-            "lexical_evidence": null,
-            "rank": 494
-          },
-          "after": {
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-              "CD14- (1 of 3 alt.)",
-              "CD19- (1 of 2 alt.)",
-              "CD56+ (hi)"
-            ],
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-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
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-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
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-            "disqualified": false,
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-            "rank": 1
-          },
-          "token_changes": [
-            {
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-                {
-                  "marker_token": "CD16",
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-                  "protein_resolution": "withhold",
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-            },
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-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-                },
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-              "pr": "PR:000001483",
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-              "uniprot_human": "",
-              "uniprot_mouse": "UniProtKB:P08508",
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-              "hgnc_id": "HGNC:3619",
-              "hgnc_symbol": "FCGR3A",
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-              ],
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-              "resolution_paths": []
-            }
-          ]
-        },
-        {
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-              "CD56+ (dim)"
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-              "CD45+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
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-              "CD3+",
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-          },
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-                },
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-                }
-              ]
-            },
-            {
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-              "relation": "RO:0002104",
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-              "asserted": "True",
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-              "uniprot_mouse": "UniProtKB:P08508",
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-              "hgnc_id": "HGNC:3619",
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-          ]
-        },
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-                },
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-          ]
-        },
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-      ],
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-          "evidence_reference": "mappings/curated_mappings.tsv",
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-                "CD3+",
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-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD3+",
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-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
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-                "CD45+",
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-              "rank_worst": 114
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-          ],
-          "status": "below_top_5",
-          "note": ""
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-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000052/Broad",
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-      "targets": [
-        "CL:4052055"
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-      "factor_edges": [
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-        "CL Mapping Notes": ""
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-          "after": "101",
-          "rank_before": 54,
-          "rank_after": 54,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "001",
-          "after": "011",
-          "rank_before": 54,
-          "rank_after": 115,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "010",
-          "after": "110",
-          "rank_before": 115,
-          "rank_after": 115,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "010",
-          "after": "011",
-          "rank_before": 115,
-          "rank_after": 115,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "011",
-          "after": "111",
-          "rank_before": 115,
-          "rank_after": 115,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "100",
-          "after": "110",
-          "rank_before": 54,
-          "rank_after": 115,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "100",
-          "after": "101",
-          "rank_before": 54,
-          "rank_after": 54,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "101",
-          "after": "111",
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-          "rank_after": 115,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "110",
-          "after": "111",
-          "rank_before": 115,
-          "rank_after": 115,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "CD4-/CD8- TCRab T cell",
-        "Abbreviation": "CD56+ CD4-/CD8- TCRab",
-        "Full Name": "CD56+ CD4-/CD8- alpha/beta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) CD56+ CD4- CD8-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000803",
-          "label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell",
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-              "CD8-"
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
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-              "CD4-"
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-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD56+",
-              "CD8-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 2,
-            "disqualified": false,
-            "candidate_sources": [
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-            "lexical_evidence": null,
-            "rank": 41
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-              "token": "CD8",
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-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
-                  "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
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-              "pr": "PR:000001084",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
-              "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-              "uniprot_human": "UniProtKB:P01732",
-              "uniprot_mouse": "UniProtKB:P01731",
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-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
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-              ],
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-                "CD8A"
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-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
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-        },
-        {
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-              "CD8-"
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
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-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
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-            "hint_bonus": 2,
-            "disqualified": false,
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-            "rank": 2
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-              "CD4-"
-            ],
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD56+",
-              "CD8-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
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-            ],
-            "contradictions": [],
-            "hint_bonus": 2,
-            "disqualified": false,
-            "candidate_sources": [
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-            "lexical_evidence": null,
-            "rank": 42
-          },
-          "token_changes": [
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-              "token": "CD8",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
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-                  "marker_token": "CD8",
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-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
-                  "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
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-              "sense": "negative",
-              "asserted": "True",
-              "pr": "PR:000001084",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
-              "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-              "uniprot_human": "UniProtKB:P01732",
-              "uniprot_mouse": "UniProtKB:P01731",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
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-                "CD8",
-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
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-              "resolution_paths": [
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-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000928",
-          "label": "activated CD4-negative, CD8-negative type I NK T cell",
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-              "CD4-",
-              "CD8-"
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-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
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-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
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-            ],
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-              "CD19-/CD20- (no axiom on any alt.)",
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-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
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-              "CD8-",
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-              "CD15-/CD66B- (no axiom on any alt.)",
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-            "rank": 43
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-          "token_changes": [
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-              "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-              "uniprot_human": "UniProtKB:P01732",
-              "uniprot_mouse": "UniProtKB:P01731",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
-              "legacy_tokens": [
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-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
-              ],
-              "resolution_paths": [
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-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                },
-                {
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-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000929",
-          "label": "CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma",
-          "expected_target": false,
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-            "label": "CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma",
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-              "CD8-"
-            ],
-            "gaps": [
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-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
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-            "candidate_sources": [
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-            "rank": 4
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-              "CD123-",
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-              "TCRAB+/TCRGD- (no axiom on any alt.)",
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-              "CD8-",
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD3+",
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "label": "CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma",
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            },
-            {
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-              "label": "CD4-negative, CD8-negative type I NK T cell secreting interleukin-4",
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "label": "mature NK T cell, human",
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-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4-",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-          "evidence_reference": "mappings/curated_mappings.tsv",
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-              "matched": [
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-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-            },
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-              "label": "CD4-negative, CD8-negative type I NK T cell",
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-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            {
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-              "label": "activated CD4-negative, CD8-negative type I NK T cell",
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-                "CD3+",
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            {
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD45+",
-                "CD3+",
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-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
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-              "label": "CD16-positive, CD56-dim natural killer cell, human",
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-                "CD45+",
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-                "TCRAB+/TCRGD- (no axiom on any alt.)",
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            },
-            {
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-              "label": "CD8-positive, alpha-beta memory T cell, CD45RO-positive",
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-                "CD4-"
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-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
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-            },
-            {
-              "cl_id": "CL:0002338",
-              "label": "CD56-positive, CD161-positive immature natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4-",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002343",
-              "label": "decidual natural killer cell, human",
-              "score": 13,
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-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (hi)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4-",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001203",
-              "label": "CD8-positive, alpha-beta memory T cell, CD45RO-positive",
-              "score": 10,
-              "matched": [
-                "CD45+",
-                "CD4-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD56+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 2,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:4052055",
-              "label": "mature NK T cell, human",
-              "score": 5,
-              "matched": [
-                "CD56+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4-",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 115,
-              "rank_best": 48,
-              "rank_worst": 115
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        },
-        "111": {
-          "case_id": "provisional/SOULCAP:SC000053/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000053",
-          "match_type": "Broad",
-          "targets": [
-            "CL:4052055"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 115,
-          "rank_best": 48,
-          "rank_worst": 115,
-          "missing_targets": [],
-          "candidates": [
-            {
-              "cl_id": "CL:0000938",
-              "label": "CD16-negative, CD56-bright natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (hi)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4-",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000939",
-              "label": "CD16-positive, CD56-dim natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (dim)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4-",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002338",
-              "label": "CD56-positive, CD161-positive immature natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4-",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002343",
-              "label": "decidual natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (hi)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4-",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001203",
-              "label": "CD8-positive, alpha-beta memory T cell, CD45RO-positive",
-              "score": 10,
-              "matched": [
-                "CD45+",
-                "CD4-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD56+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 2,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:4052055",
-              "label": "mature NK T cell, human",
-              "score": 5,
-              "matched": [
-                "CD56+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4-",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 115,
-              "rank_best": 48,
-              "rank_worst": 115
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000054/Broad",
-      "subject_id": "SOULCAP:SC000054",
-      "label": "CD56+ gamma/delta T cell",
-      "cohort": "provisional",
-      "match_type": "Broad",
-      "targets": [
-        "CL:4052055"
-      ],
-      "outcome": "regressed",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 34,
-        "001": 34,
-        "010": 87,
-        "011": 87,
-        "100": 34,
-        "101": 34,
-        "110": 87,
-        "111": 87
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": 34,
-          "rank_after": 34,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "000",
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-          "rank_before": 34,
-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "000",
-          "after": "001",
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-          "rank_after": 34,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "001",
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-          "rank_after": 34,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "001",
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-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "010",
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-          "rank_before": 87,
-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "010",
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-          "rank_before": 87,
-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "011",
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-          "rank_before": 87,
-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "100",
-          "after": "110",
-          "rank_before": 34,
-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "100",
-          "after": "101",
-          "rank_before": 34,
-          "rank_after": 34,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "101",
-          "after": "111",
-          "rank_before": 34,
-          "rank_after": 87,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "110",
-          "after": "111",
-          "rank_before": 87,
-          "rank_after": 87,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRgd",
-        "Abbreviation": "CD56+ TCRgd",
-        "Full Name": "CD56+ gamma/delta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) CD56+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "Incorrectly called NKT-like or NKT",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000097",
-          "label": "mast cell",
-          "expected_target": false,
-          "before": {
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-            "label": "mast cell",
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-              "CD123-"
-            ],
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 2
-          },
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-            "label": "mast cell",
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-              "CD123-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 39
-          },
-          "token_changes": [
-            {
-              "token": "FCER1A",
-              "level": "high",
-              "action": "added",
-              "policy_records": [
-                {
-                  "marker_token": "FCER1A",
-                  "representation": "single_protein",
-                  "protein_resolution": "allow",
-                  "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#FceR1a",
-                  "registry_sha256": "0ffb585d4dc904f1d78456c5f8ae18e3d3c7e53e0a0addf4306a7654eec5884a"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
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-            {
-              "cell": "CL:0000097",
-              "cell_label": "mast cell",
-              "relation": "RO:0015015",
-              "relation_label": "has high plasma membrane amount",
-              "sense": "high",
-              "asserted": "True",
-              "pr": "PR:000007431",
-              "pr_label": "high affinity immunoglobulin epsilon receptor subunit alpha",
-              "cd_synonym": "",
-              "uniprot_human": "UniProtKB:P12319",
-              "uniprot_mouse": "UniProtKB:P20489",
-              "xrefs": "IUPHARobj:2933",
-              "hgnc_id": "HGNC:3609",
-              "hgnc_symbol": "FCER1A",
-              "legacy_tokens": [],
-              "enhanced_tokens": [
-                "FCER1A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000007431",
-                  "tokens": [
-                    "FCER1A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000484",
-          "label": "connective tissue type mast cell",
-          "expected_target": false,
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-            "label": "connective tissue type mast cell",
-            "score": 5,
-            "matched": [
-              "CD123-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
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-            "rank": 3
-          },
-          "after": {
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-            "label": "connective tissue type mast cell",
-            "score": 5,
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-              "CD123-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
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-            "rank": 40
-          },
-          "token_changes": [
-            {
-              "token": "FCER1A",
-              "level": "high",
-              "action": "added",
-              "policy_records": [
-                {
-                  "marker_token": "FCER1A",
-                  "representation": "single_protein",
-                  "protein_resolution": "allow",
-                  "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#FceR1a",
-                  "registry_sha256": "0ffb585d4dc904f1d78456c5f8ae18e3d3c7e53e0a0addf4306a7654eec5884a"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0000484",
-              "cell_label": "connective tissue type mast cell",
-              "relation": "RO:0015015",
-              "relation_label": "has high plasma membrane amount",
-              "sense": "high",
-              "asserted": "False",
-              "pr": "PR:000007431",
-              "pr_label": "high affinity immunoglobulin epsilon receptor subunit alpha",
-              "cd_synonym": "",
-              "uniprot_human": "UniProtKB:P12319",
-              "uniprot_mouse": "UniProtKB:P20489",
-              "xrefs": "IUPHARobj:2933",
-              "hgnc_id": "HGNC:3609",
-              "hgnc_symbol": "FCER1A",
-              "legacy_tokens": [],
-              "enhanced_tokens": [
-                "FCER1A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000007431",
-                  "tokens": [
-                    "FCER1A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000485",
-          "label": "mucosal type mast cell",
-          "expected_target": false,
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-            "cl_id": "CL:0000485",
-            "label": "mucosal type mast cell",
-            "score": 5,
-            "matched": [
-              "CD123-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 4
-          },
-          "after": {
-            "cl_id": "CL:0000485",
-            "label": "mucosal type mast cell",
-            "score": 5,
-            "matched": [
-              "CD123-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD56+",
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-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-            {
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD45+",
-                "CD3+",
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD19- (1 of 2 alt.)",
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-      "targets": [
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-      "outcome": "regressed",
-      "lost_top5": false,
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-      "ranks": {
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-          "note": ""
-        },
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-          "cohort": "provisional",
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-          "match_type": "Broad",
-          "targets": [
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-          "evidence_reference": "mappings/curated_mappings.tsv",
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-              "cl_id": "CL:0000895",
-              "label": "naive thymus-derived CD4-positive, alpha-beta T cell",
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-                "CD4+",
-                "CD8-"
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001044",
-              "label": "effector CD4-positive, alpha-beta T cell",
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-                "CD4+",
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-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
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-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
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-              "cl_id": "CL:0001046",
-              "label": "memory CCR4-positive regulatory T cell",
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-            {
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-                "CD19-/CD20- (no axiom on any alt.)",
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-                "CD4+",
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-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-              ],
-              "lexical_evidence": null
-            }
-          ],
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-              "cl_id": "CL:4052055",
-              "label": "mature NK T cell, human",
-              "score": 5,
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-                "CD56+"
-              ],
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              ],
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-              "rank": 70,
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-              "rank_worst": 70
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-          ],
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-          "note": ""
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-          "case_id": "provisional/SOULCAP:SC000055/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000055",
-          "match_type": "Broad",
-          "targets": [
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-          "evidence_reference": "mappings/curated_mappings.tsv",
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-              "cl_id": "CL:0000938",
-              "label": "CD16-negative, CD56-bright natural killer cell, human",
-              "score": 13,
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-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (hi)"
-              ],
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-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-              "candidate_sources": [
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-              "lexical_evidence": null
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-            {
-              "cl_id": "CL:0000939",
-              "label": "CD16-positive, CD56-dim natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (dim)"
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-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-            },
-            {
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-              "label": "CD56-positive, CD161-positive immature natural killer cell, human",
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-                "CD19- (1 of 2 alt.)",
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-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
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-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-              "candidate_sources": [
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-            {
-              "cl_id": "CL:0002343",
-              "label": "decidual natural killer cell, human",
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-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
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-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
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-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000623",
-              "label": "natural killer cell",
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-                "CD3+",
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-                "CD56+",
-                "CD4+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              ],
-              "lexical_evidence": null
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-          ],
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-              "label": "mature NK T cell, human",
-              "score": 5,
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-              ],
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-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "rank_worst": 120
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-          ],
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-          "note": ""
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-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000055",
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-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD19- (1 of 2 alt.)",
-                "CD56+ (dim)"
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-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
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-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-            {
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-                "CD19- (1 of 2 alt.)",
-                "CD56+"
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-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-            {
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-                "CD56+ (hi)"
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-              "gaps": [
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-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-            },
-            {
-              "cl_id": "CL:0000623",
-              "label": "natural killer cell",
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-                "CD19- (1 of 2 alt.)"
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-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "CD4+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "rank_worst": 120
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-          ],
-          "status": "below_top_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000056/Broad",
-      "subject_id": "SOULCAP:SC000056",
-      "label": "CD56+ CD8+ gamma/delta T cell",
-      "cohort": "provisional",
-      "match_type": "Broad",
-      "targets": [
-        "CL:4052055"
-      ],
-      "outcome": "regressed",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 63,
-        "001": 63,
-        "010": 114,
-        "011": 114,
-        "100": 63,
-        "101": 63,
-        "110": 114,
-        "111": 114
-      },
-      "factor_edges": [
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-          "factor": "A",
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-          "rank_before": 63,
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-          "top5_delta": 0
-        },
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-        },
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-        },
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-        },
-        {
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-          "rank_after": 114,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "CD8+ TCRgd T cell",
-        "Abbreviation": "CD56+ CD8+ TCRgd",
-        "Full Name": "CD56+ CD8+ gamma/delta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) CD56+ CD4- CD8+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000623",
-          "label": "natural killer cell",
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-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
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-              "hgnc_id": "HGNC:1674",
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-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0002343",
-          "label": "decidual natural killer cell, human",
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-              "CD45+",
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-              "CD8+",
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-              "CD15-/CD66B- (no axiom on any alt.)"
-            ],
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-              "CD3+"
-            ],
-            "hint_bonus": 1,
-            "disqualified": true,
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-            "lexical_evidence": null,
-            "rank": 416
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-              "CD19- (1 of 2 alt.)",
-              "CD56+ (hi)"
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-            "gaps": [
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD4-",
-              "CD8+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
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-            ],
-            "lexical_evidence": null,
-            "rank": 4
-          },
-          "token_changes": [
-            {
-              "token": "CD16",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD16",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD16",
-                  "registry_sha256": "a7a9cad253db0e9a36b0bf2b5efa04ded5e314c01b3166d19623519f6a3f43e7"
-                }
-              ],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0002343",
-              "cell_label": "decidual natural killer cell, human",
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-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
-              "legacy_tokens": [
-                "CD3",
-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            },
-            {
-              "cell": "CL:0002343",
-              "cell_label": "decidual natural killer cell, human",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "True",
-              "pr": "PR:000001483",
-              "pr_label": "low affinity immunoglobulin gamma Fc region receptor III",
-              "cd_synonym": "CD16 (exact)",
-              "uniprot_human": "",
-              "uniprot_mouse": "UniProtKB:P08508",
-              "xrefs": "",
-              "hgnc_id": "HGNC:3619",
-              "hgnc_symbol": "FCGR3A",
-              "legacy_tokens": [
-                "CD16"
-              ],
-              "enhanced_tokens": [],
-              "resolution_paths": []
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:4052055",
-          "label": "mature NK T cell, human",
-          "expected_target": true,
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-            "label": "mature NK T cell, human",
-            "score": 5,
-            "matched": [
-              "CD56+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD4-",
-              "CD8+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
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-            ],
-            "lexical_evidence": null,
-            "rank": 63
-          },
-          "after": {
-            "cl_id": "CL:4052055",
-            "label": "mature NK T cell, human",
-            "score": 5,
-            "matched": [
-              "CD56+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD4-",
-              "CD8+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 114
-          },
-          "token_changes": [],
-          "relevant_axioms": []
-        }
-      ],
-      "runs": {
-        "000": {
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-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000056",
-          "match_type": "Broad",
-          "targets": [
-            "CL:4052055"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 63,
-          "rank_best": 34,
-          "rank_worst": 63,
-          "missing_targets": [],
-          "candidates": [
-            {
-              "cl_id": "CL:0000900",
-              "label": "naive thymus-derived CD8-positive, alpha-beta T cell",
-              "score": 13,
-              "matched": [
-                "CD45+",
-                "CD4-",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001050",
-              "label": "effector CD8-positive, alpha-beta T cell",
-              "score": 13,
-              "matched": [
-                "CD45+",
-                "CD4-",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001203",
-              "label": "CD8-positive, alpha-beta memory T cell, CD45RO-positive",
-              "score": 13,
-              "matched": [
-                "CD45+",
-                "CD4-",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000625",
-              "label": "CD8-positive, alpha-beta T cell",
-              "score": 9,
-              "matched": [
-                "CD4-",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000794",
-              "label": "CD8-positive, alpha-beta cytotoxic T cell",
-              "score": 9,
-              "matched": [
-                "CD4-",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:4052055",
-              "label": "mature NK T cell, human",
-              "score": 5,
-              "matched": [
-                "CD56+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4-",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null,
-              "rank": 63,
-              "rank_best": 34,
-              "rank_worst": 63
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        },
-        "001": {
-          "case_id": "provisional/SOULCAP:SC000056/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000056",
-          "match_type": "Broad",
-          "targets": [
-            "CL:4052055"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 63,
-          "rank_best": 34,
-          "rank_worst": 63,
-          "missing_targets": [],
-          "candidates": [
-            {
-              "cl_id": "CL:0000900",
-              "label": "naive thymus-derived CD8-positive, alpha-beta T cell",
-              "score": 13,
-              "matched": [
-                "CD45+",
-                "CD4-",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001050",
-              "label": "effector CD8-positive, alpha-beta T cell",
-              "score": 13,
-              "matched": [
-                "CD45+",
-                "CD4-",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001203",
-              "label": "CD8-positive, alpha-beta memory T cell, CD45RO-positive",
-              "score": 13,
-              "matched": [
-                "CD45+",
-                "CD4-",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000625",
-              "label": "CD8-positive, alpha-beta T cell",
-              "score": 9,
-              "matched": [
-                "CD4-",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000794",
-              "label": "CD8-positive, alpha-beta cytotoxic T cell",
-              "score": 9,
-              "matched": [
-                "CD4-",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              ],
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-            }
-          ],
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-              "label": "mature NK T cell, human",
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-              ],
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-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4-",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
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-              "candidate_sources": [
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-              "rank_worst": 63
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
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-        "010": {
-          "case_id": "provisional/SOULCAP:SC000056/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000056",
-          "match_type": "Broad",
-          "targets": [
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-          "evidence_reference": "mappings/curated_mappings.tsv",
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-              "cl_id": "CL:0000938",
-              "label": "CD16-negative, CD56-bright natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (hi)"
-              ],
-              "gaps": [
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-                "CD45+",
-                "CD3+",
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD3+",
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-                "CD3+",
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-                "CD45+",
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD4-",
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-                "CD19-/CD20- (no axiom on any alt.)",
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-                "CD8+",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-          "note": ""
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-    },
-    {
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-      "subject_id": "SOULCAP:SC000057",
-      "label": "CD56+ CD4+/CD8+ gamma/delta T cell",
-      "cohort": "provisional",
-      "match_type": "Broad",
-      "targets": [
-        "CL:4052055"
-      ],
-      "outcome": "regressed",
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-      "ranks": {
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-      ],
-      "source_profile": {
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-        "WB or PBMC": "",
-        "Parent": "CD4+/CD8+ TCRgd",
-        "Abbreviation": "CD56+ CD4+/CD8+ TCRgd",
-        "Full Name": "CD56+ CD4+/CD8+ gamma/delta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
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-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) CD56+ CD4+ CD8+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
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-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
-                  "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
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-              "cell_label": "CD69-positive double-positive thymocyte",
-              "relation": "BFO:0000051",
-              "relation_label": "has part",
-              "sense": "positive",
-              "asserted": "False",
-              "pr": "PR:000001084",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
-              "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-              "uniprot_human": "UniProtKB:P01732",
-              "uniprot_mouse": "UniProtKB:P01731",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
-              "legacy_tokens": [
-                "CD8",
-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            },
-            {
-              "cell": "CL:0002429",
-              "cell_label": "CD69-positive double-positive thymocyte",
-              "relation": "RO:0002104",
-              "relation_label": "has plasma membrane part",
-              "sense": "positive",
-              "asserted": "False",
-              "pr": "PR:000025402",
-              "pr_label": "T cell receptor co-receptor CD8",
-              "cd_synonym": "CD8 (label)",
-              "uniprot_human": "",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "",
-              "hgnc_symbol": "",
-              "legacy_tokens": [
-                "CD8"
-              ],
-              "enhanced_tokens": [],
-              "resolution_paths": []
-            },
-            {
-              "cell": "CL:0002429",
-              "cell_label": "CD69-positive double-positive thymocyte",
-              "relation": "BFO:0000051",
-              "relation_label": "has part",
-              "sense": "positive",
-              "asserted": "False",
-              "pr": "PR:000025403",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain isoform 1",
-              "cd_synonym": "CD8 (label); CD8A (exact)",
-              "uniprot_human": "UniProtKB:P01732-1",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
-              "legacy_tokens": [
-                "CD8",
-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:4052055",
-          "label": "mature NK T cell, human",
-          "expected_target": true,
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-            "label": "mature NK T cell, human",
-            "score": 5,
-            "matched": [
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-            ],
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD4+",
-              "CD8+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 42
-          },
-          "after": {
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-            "label": "mature NK T cell, human",
-            "score": 5,
-            "matched": [
-              "CD56+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD4+",
-              "CD8+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 120
-          },
-          "token_changes": [],
-          "relevant_axioms": []
-        }
-      ],
-      "runs": {
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-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000057",
-          "match_type": "Broad",
-          "targets": [
-            "CL:4052055"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 42,
-          "rank_best": 9,
-          "rank_worst": 42,
-          "missing_targets": [],
-          "candidates": [
-            {
-              "cl_id": "CL:0002039",
-              "label": "immature NK T cell stage I, mouse",
-              "score": 9,
-              "matched": [
-                "CD4+ (dim)",
-                "CD8+ (dim)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000809",
-              "label": "double-positive, alpha-beta thymocyte",
-              "score": 8,
-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 0,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002427",
-              "label": "resting double-positive thymocyte",
-              "score": 8,
-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 0,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002428",
-              "label": "double-positive blast",
-              "score": 8,
-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 0,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002429",
-              "label": "CD69-positive double-positive thymocyte",
-              "score": 8,
-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 0,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:4052055",
-              "label": "mature NK T cell, human",
-              "score": 5,
-              "matched": [
-                "CD56+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 42,
-              "rank_best": 9,
-              "rank_worst": 42
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        },
-        "001": {
-          "case_id": "provisional/SOULCAP:SC000057/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000057",
-          "match_type": "Broad",
-          "targets": [
-            "CL:4052055"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 42,
-          "rank_best": 9,
-          "rank_worst": 42,
-          "missing_targets": [],
-          "candidates": [
-            {
-              "cl_id": "CL:0002039",
-              "label": "immature NK T cell stage I, mouse",
-              "score": 9,
-              "matched": [
-                "CD4+ (dim)",
-                "CD8+ (dim)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000809",
-              "label": "double-positive, alpha-beta thymocyte",
-              "score": 8,
-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 0,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002427",
-              "label": "resting double-positive thymocyte",
-              "score": 8,
-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 0,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002428",
-              "label": "double-positive blast",
-              "score": 8,
-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 0,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002429",
-              "label": "CD69-positive double-positive thymocyte",
-              "score": 8,
-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 0,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:4052055",
-              "label": "mature NK T cell, human",
-              "score": 5,
-              "matched": [
-                "CD56+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 42,
-              "rank_best": 9,
-              "rank_worst": 42
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        },
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-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000057",
-          "match_type": "Broad",
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-          "evidence_reference": "mappings/curated_mappings.tsv",
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-          "rank_worst": 120,
-          "missing_targets": [],
-          "candidates": [
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-              "cl_id": "CL:0000938",
-              "label": "CD16-negative, CD56-bright natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (hi)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000939",
-              "label": "CD16-positive, CD56-dim natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (dim)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002338",
-              "label": "CD56-positive, CD161-positive immature natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002343",
-              "label": "decidual natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (hi)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000623",
-              "label": "natural killer cell",
-              "score": 9,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002343",
-              "label": "decidual natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (hi)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000623",
-              "label": "natural killer cell",
-              "score": 9,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:4052055",
-              "label": "mature NK T cell, human",
-              "score": 5,
-              "matched": [
-                "CD56+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 120,
-              "rank_best": 44,
-              "rank_worst": 120
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        },
-        "111": {
-          "case_id": "provisional/SOULCAP:SC000057/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000057",
-          "match_type": "Broad",
-          "targets": [
-            "CL:4052055"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 120,
-          "rank_best": 44,
-          "rank_worst": 120,
-          "missing_targets": [],
-          "candidates": [
-            {
-              "cl_id": "CL:0000938",
-              "label": "CD16-negative, CD56-bright natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (hi)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000939",
-              "label": "CD16-positive, CD56-dim natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (dim)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002338",
-              "label": "CD56-positive, CD161-positive immature natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002343",
-              "label": "decidual natural killer cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD56+ (hi)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000623",
-              "label": "natural killer cell",
-              "score": 9,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD56+",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:4052055",
-              "label": "mature NK T cell, human",
-              "score": 5,
-              "matched": [
-                "CD56+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 120,
-              "rank_best": 44,
-              "rank_worst": 120
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000058/Broad",
-      "subject_id": "SOULCAP:SC000058",
-      "label": "CD56+ CD8-/CD8- gamma/delta T cell",
-      "cohort": "provisional",
-      "match_type": "Broad",
-      "targets": [
-        "CL:4052055"
-      ],
-      "outcome": "regressed",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 54,
-        "001": 54,
-        "010": 120,
-        "011": 120,
-        "100": 54,
-        "101": 54,
-        "110": 120,
-        "111": 120
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": 54,
-          "rank_after": 54,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "000",
-          "after": "010",
-          "rank_before": 54,
-          "rank_after": 120,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "000",
-          "after": "001",
-          "rank_before": 54,
-          "rank_after": 54,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "001",
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-          "rank_after": 54,
-          "top5_delta": 0
-        },
-        {
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-          "before": "001",
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-          "rank_after": 120,
-          "top5_delta": 0
-        },
-        {
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-          "rank_before": 120,
-          "rank_after": 120,
-          "top5_delta": 0
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-        {
-          "factor": "D",
-          "before": "010",
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-          "rank_after": 120,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "011",
-          "after": "111",
-          "rank_before": 120,
-          "rank_after": 120,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "100",
-          "after": "110",
-          "rank_before": 54,
-          "rank_after": 120,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "100",
-          "after": "101",
-          "rank_before": 54,
-          "rank_after": 54,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "101",
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-          "rank_after": 120,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "110",
-          "after": "111",
-          "rank_before": 120,
-          "rank_after": 120,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "CD4-/CD8- TCRgd",
-        "Abbreviation": "CD56+ CD8-/CD8- TCRgd",
-        "Full Name": "CD56+ CD8-/CD8- gamma/delta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) CD56+ CD4- CD8-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000803",
-          "label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell",
-          "expected_target": false,
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-            "matched": [
-              "CD4-",
-              "CD8-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
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-            "candidate_sources": [
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-              "CD4-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD56+",
-              "CD8-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
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-            "candidate_sources": [
-              "marker_axioms"
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-          "token_changes": [
-            {
-              "token": "CD8",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD8",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
-                  "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
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-            {
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-              "asserted": "True",
-              "pr": "PR:000001084",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
-              "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-              "uniprot_human": "UniProtKB:P01732",
-              "uniprot_mouse": "UniProtKB:P01731",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
-              "legacy_tokens": [
-                "CD8",
-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
-              ],
-              "resolution_paths": [
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-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
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-              "CD4-",
-              "CD8-"
-            ],
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
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-            ],
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-          },
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-              "CD4-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD56+",
-              "CD8-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 3,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 41
-          },
-          "token_changes": [
-            {
-              "token": "CD8",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD8",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
-                  "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
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-              ],
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-            }
-          ],
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-              "sense": "negative",
-              "asserted": "True",
-              "pr": "PR:000001084",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
-              "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-              "uniprot_human": "UniProtKB:P01732",
-              "uniprot_mouse": "UniProtKB:P01731",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
-              "legacy_tokens": [
-                "CD8",
-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
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-              "resolution_paths": [
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-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000928",
-          "label": "activated CD4-negative, CD8-negative type I NK T cell",
-          "expected_target": false,
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-            "label": "activated CD4-negative, CD8-negative type I NK T cell",
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-            "matched": [
-              "CD4-",
-              "CD8-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD56+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
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-            ],
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-            "rank": 3
-          },
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-                    "CD24"
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-            "rank": 101
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
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-          "note": ""
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-      "match_type": "Exact",
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-          "factor": "A",
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-        {
-          "factor": "D",
-          "before": "110",
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-          "rank_before": 70,
-          "rank_after": 70,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "T cell",
-        "Abbreviation": "CD4+ T cell",
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-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
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-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ CD4+ CD8-",
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-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
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-          ]
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-              "uniprot_human": "",
-              "uniprot_mouse": "",
-              "xrefs": "",
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-              "hgnc_symbol": "",
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-                "CD8"
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-              "enhanced_tokens": [],
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-            }
-          ]
-        },
-        {
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-              "CD4+",
-              "CD8-",
-              "CD15-/CD66B- (no axiom on any alt.)",
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-            "contradictions": [
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-            "hint_bonus": 1,
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-              "CD4+",
-              "CD8-",
-              "CD15-/CD66B- (no axiom on any alt.)",
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-          },
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-            },
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-              "pr": "PR:000001014",
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-              "cd_synonym": "CD45R (related); CD45RABC (label)",
-              "uniprot_human": "UniProtKB:P08575-3",
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-              "hgnc_id": "HGNC:9666",
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-            }
-          ]
-        },
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-                  "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
-                }
-              ],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
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-              "cell_label": "CD8-alpha-positive plasmacytoid dendritic cell",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
-              "legacy_tokens": [
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-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            },
-            {
-              "cell": "CL:0002456",
-              "cell_label": "CD8-alpha-positive plasmacytoid dendritic cell",
-              "relation": "RO:0002104",
-              "relation_label": "has plasma membrane part",
-              "sense": "positive",
-              "asserted": "False",
-              "pr": "PR:000001014",
-              "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RABC",
-              "cd_synonym": "CD45R (related); CD45RABC (label)",
-              "uniprot_human": "UniProtKB:P08575-3",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "HGNC:9666",
-              "hgnc_symbol": "PTPRC",
-              "legacy_tokens": [
-                "CD45R",
-                "CD45RABC"
-              ],
-              "enhanced_tokens": [
-                "CD45RABC"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD45RABC",
-                  "tokens": [
-                    "CD45RABC"
-                  ]
-                }
-              ]
-            },
-            {
-              "cell": "CL:0002456",
-              "cell_label": "CD8-alpha-positive plasmacytoid dendritic cell",
-              "relation": "RO:0002104",
-              "relation_label": "has plasma membrane part",
-              "sense": "positive",
-              "asserted": "True",
-              "pr": "PR:000001084",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
-              "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-              "uniprot_human": "UniProtKB:P01732",
-              "uniprot_mouse": "UniProtKB:P01731",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
-              "legacy_tokens": [
-                "CD8",
-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
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-              "CD4+",
-              "CD8-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD3+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
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-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
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-            ],
-            "lexical_evidence": null,
-            "rank": 5
-          },
-          "after": {
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-            "label": "naive regulatory T cell",
-            "score": 9,
-            "matched": [
-              "CD45+",
-              "CD4+"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD3+",
-              "CD8-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 49
-          },
-          "token_changes": [
-            {
-              "token": "CD8",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD8",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
-                  "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
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-              "cell_label": "naive regulatory T cell",
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-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000025402",
-              "pr_label": "T cell receptor co-receptor CD8",
-              "cd_synonym": "CD8 (label)",
-              "uniprot_human": "",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "",
-              "hgnc_symbol": "",
-              "legacy_tokens": [
-                "CD8"
-              ],
-              "enhanced_tokens": [],
-              "resolution_paths": []
-            }
-          ]
-        }
-      ],
-      "runs": {
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-          "case_id": "provisional/SOULCAP:SC000062/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000062",
-          "match_type": "Broad",
-          "targets": [
-            "CL:0000624"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 9,
-          "rank_best": 6,
-          "rank_worst": 36,
-          "missing_targets": [],
-          "candidates": [
-            {
-              "cl_id": "CL:0000895",
-              "label": "naive thymus-derived CD4-positive, alpha-beta T cell",
-              "score": 13,
-              "matched": [
-                "CD45+",
-                "CD4+",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001044",
-              "label": "effector CD4-positive, alpha-beta T cell",
-              "score": 13,
-              "matched": [
-                "CD45+",
-                "CD4+",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001046",
-              "label": "memory CCR4-positive regulatory T cell",
-              "score": 13,
-              "matched": [
-                "CD45+",
-                "CD4+",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001204",
-              "label": "CD4-positive, alpha-beta memory T cell, CD45RO-positive",
-              "score": 13,
-              "matched": [
-                "CD45+",
-                "CD4+",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002677",
-              "label": "naive regulatory T cell",
-              "score": 13,
-              "matched": [
-                "CD45+",
-                "CD4+",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:0000624",
-              "label": "CD4-positive, alpha-beta T cell",
-              "score": 9,
-              "matched": [
-                "CD4+",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 9,
-              "rank_best": 6,
-              "rank_worst": 36
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        },
-        "001": {
-          "case_id": "provisional/SOULCAP:SC000062/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000062",
-          "match_type": "Broad",
-          "targets": [
-            "CL:0000624"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 9,
-          "rank_best": 6,
-          "rank_worst": 36,
-          "missing_targets": [],
-          "candidates": [
-            {
-              "cl_id": "CL:0000895",
-              "label": "naive thymus-derived CD4-positive, alpha-beta T cell",
-              "score": 13,
-              "matched": [
-                "CD45+",
-                "CD4+",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001044",
-              "label": "effector CD4-positive, alpha-beta T cell",
-              "score": 13,
-              "matched": [
-                "CD45+",
-                "CD4+",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001046",
-              "label": "memory CCR4-positive regulatory T cell",
-              "score": 13,
-              "matched": [
-                "CD45+",
-                "CD4+",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001204",
-              "label": "CD4-positive, alpha-beta memory T cell, CD45RO-positive",
-              "score": 13,
-              "matched": [
-                "CD45+",
-                "CD4+",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002677",
-              "label": "naive regulatory T cell",
-              "score": 13,
-              "matched": [
-                "CD45+",
-                "CD4+",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:0000624",
-              "label": "CD4-positive, alpha-beta T cell",
-              "score": 9,
-              "matched": [
-                "CD4+",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
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-              "rank": 9,
-              "rank_best": 6,
-              "rank_worst": 36
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        },
-        "010": {
-          "case_id": "provisional/SOULCAP:SC000062/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000062",
-          "match_type": "Broad",
-          "targets": [
-            "CL:0000624"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 70,
-          "rank_best": 60,
-          "rank_worst": 179,
-          "missing_targets": [],
-          "candidates": [
-            {
-              "cl_id": "CL:0002455",
-              "label": "CD8-alpha-negative plasmacytoid dendritic cell",
-              "score": 15,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "CD8-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002456",
-              "label": "CD8-alpha-positive plasmacytoid dendritic cell",
-              "score": 15,
-              "matched": [
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-                "CD45+",
-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "CD8-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001057",
-              "label": "myeloid dendritic cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD123-"
-              ],
-              "gaps": [
-                "CD45+",
-                "CD3+",
-                "CD4+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000989",
-              "label": "CD11c-low plasmacytoid dendritic cell",
-              "score": 11,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
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-            {
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-                "CD3+",
-                "CD4+",
-                "CD8-",
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-      "label": "alpha/beta and gamma/delta CD8+ T cells",
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-      "targets": [
-        "CL:0000625"
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-      "outcome": "regressed",
-      "lost_top5": true,
-      "gained_top5": false,
-      "ranks": {
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-                "CD8+"
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-              "gaps": [
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            },
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-              "label": "double-positive blast",
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002427",
-              "label": "resting double-positive thymocyte",
-              "score": 8,
-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002428",
-              "label": "double-positive blast",
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-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002429",
-              "label": "CD69-positive double-positive thymocyte",
-              "score": 8,
-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "disqualified": false,
-              "candidate_sources": [
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-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [],
-          "status": "target_not_in_index",
-          "note": ""
-        },
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-          "case_id": "provisional/SOULCAP:SC000064/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000064",
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-          "targets": [
-            "CL:0000789"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": true,
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-          "rank_worst": null,
-          "missing_targets": [
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-          ],
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-              "cl_id": "CL:0002455",
-              "label": "CD8-alpha-negative plasmacytoid dendritic cell",
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-                "CD45+",
-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002456",
-              "label": "CD8-alpha-positive plasmacytoid dendritic cell",
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-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001057",
-              "label": "myeloid dendritic cell, human",
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-                "CD19- (1 of 2 alt.)",
-                "CD123-"
-              ],
-              "gaps": [
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-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000989",
-              "label": "CD11c-low plasmacytoid dendritic cell",
-              "score": 11,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
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-                "CD123-",
-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000992",
-              "label": "immature CD11c-low plasmacytoid dendritic cell",
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-                "CD45+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
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-          ],
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-          "note": ""
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-          "case_id": "provisional/SOULCAP:SC000064/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000064",
-          "match_type": "Broad",
-          "targets": [
-            "CL:0000789"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
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-          "rank_worst": null,
-          "missing_targets": [
-            "CL:0000789"
-          ],
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-              "cl_id": "CL:0002455",
-              "label": "CD8-alpha-negative plasmacytoid dendritic cell",
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-                "CD45+",
-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
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-              "lexical_evidence": null
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-            {
-              "cl_id": "CL:0002456",
-              "label": "CD8-alpha-positive plasmacytoid dendritic cell",
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-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "disqualified": false,
-              "candidate_sources": [
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-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001057",
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-                "CD19- (1 of 2 alt.)",
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-                "CD45+",
-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "candidate_sources": [
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-            },
-            {
-              "cl_id": "CL:0000989",
-              "label": "CD11c-low plasmacytoid dendritic cell",
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-                "CD45+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "candidate_sources": [
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-            {
-              "cl_id": "CL:0000992",
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-                "CD45+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "CD4+",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "candidate_sources": [
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-              ],
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-          ],
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-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000065/Broad",
-      "subject_id": "SOULCAP:SC000065",
-      "label": "alpha/beta and gamma/delta CD4- and CD8- T cells",
-      "cohort": "provisional",
-      "match_type": "Broad",
-      "targets": [
-        "CL:0000084"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": null,
-        "001": null,
-        "010": null,
-        "011": null,
-        "100": null,
-        "101": null,
-        "110": null,
-        "111": null
-      },
-      "factor_edges": [
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-          "factor": "A",
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-          "top5_delta": 0
-        },
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-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "T cell",
-        "Abbreviation": "CD4-/CD8- T cell",
-        "Full Name": "alpha/beta and gamma/delta CD4- and CD8- T cells",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ CD4- CD8-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
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-          "label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell",
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-              "CD8-"
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
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-              "CD3+",
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-              "CD3+",
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-          "case_id": "provisional/SOULCAP:SC000065/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000065",
-          "match_type": "Broad",
-          "targets": [
-            "CL:0000084"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": true,
-          "rank": null,
-          "rank_best": null,
-          "rank_worst": null,
-          "missing_targets": [
-            "CL:0000084"
-          ],
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-              "cl_id": "CL:0000803",
-              "label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell",
-              "score": 11,
-              "matched": [
-                "CD4-",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000924",
-              "label": "CD4-negative, CD8-negative type I NK T cell",
-              "score": 11,
-              "matched": [
-                "CD4-",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "contradictions": [],
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-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000928",
-              "label": "activated CD4-negative, CD8-negative type I NK T cell",
-              "score": 11,
-              "matched": [
-                "CD4-",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000929",
-              "label": "CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma",
-              "score": 11,
-              "matched": [
-                "CD4-",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 3,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000930",
-              "label": "CD4-negative, CD8-negative type I NK T cell secreting interleukin-4",
-              "score": 11,
-              "matched": [
-                "CD4-",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [],
-          "status": "target_not_in_index",
-          "note": ""
-        },
-        "110": {
-          "case_id": "provisional/SOULCAP:SC000065/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000065",
-          "match_type": "Broad",
-          "targets": [
-            "CL:0000084"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": true,
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-          "rank_worst": null,
-          "missing_targets": [
-            "CL:0000084"
-          ],
-          "candidates": [
-            {
-              "cl_id": "CL:0002000",
-              "label": "Kit-positive erythroid progenitor cell",
-              "score": 17,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD123-",
-                "CD4-"
-              ],
-              "gaps": [
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-                "CD3+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002029",
-              "label": "Fc-epsilon RIalpha-low mast cell progenitor",
-              "score": 17,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4-"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD3+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002353",
-              "label": "fetal liver hematopoietic progenitor cell",
-              "score": 17,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4-"
-              ],
-              "gaps": [
-                "CD123-",
-                "CD3+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001021",
-              "label": "CD34-positive, CD38-positive common lymphoid progenitor",
-              "score": 16,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4-"
-              ],
-              "gaps": [
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-                "CD3+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002023",
-              "label": "CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell",
-              "score": 14,
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-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD4-"
-              ],
-              "gaps": [
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-                "CD45+",
-                "CD3+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            }
-          ],
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-          "note": ""
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-          "case_id": "provisional/SOULCAP:SC000065/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000065",
-          "match_type": "Broad",
-          "targets": [
-            "CL:0000084"
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-          "evidence_reference": "mappings/curated_mappings.tsv",
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-          "rank_best": null,
-          "rank_worst": null,
-          "missing_targets": [
-            "CL:0000084"
-          ],
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-                "CD19- (1 of 2 alt.)",
-                "CD123-",
-                "CD4-"
-              ],
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-                "CD3+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002029",
-              "label": "Fc-epsilon RIalpha-low mast cell progenitor",
-              "score": 17,
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-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4-"
-              ],
-              "gaps": [
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-                "CD3+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002353",
-              "label": "fetal liver hematopoietic progenitor cell",
-              "score": 17,
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-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4-"
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-                "CD3+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "contradictions": [],
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-              "candidate_sources": [
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-            },
-            {
-              "cl_id": "CL:0001021",
-              "label": "CD34-positive, CD38-positive common lymphoid progenitor",
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-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4-"
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-                "CD3+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "candidate_sources": [
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-            {
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-                "CD19- (1 of 2 alt.)",
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-                "CD45+",
-                "CD3+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
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-          "status": "target_not_in_index",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000066/Exact",
-      "subject_id": "SOULCAP:SC000066",
-      "label": "CD4+ alpha/beta T cell",
-      "cohort": "provisional",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000624"
-      ],
-      "outcome": "regressed",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": 9,
-        "001": 9,
-        "010": 69,
-        "011": 69,
-        "100": 9,
-        "101": 9,
-        "110": 69,
-        "111": 69
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-      "factor_edges": [
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-          "factor": "A",
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-          "rank_before": 9,
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-          "top5_delta": 0
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-        {
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-          "top5_delta": 0
-        },
-        {
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-          "rank_after": 69,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRab",
-        "Abbreviation": "CD4+ TCRab T cell",
-        "Full Name": "CD4+ alpha/beta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) CD4+ CD8-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
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-          "label": "CD4-positive, alpha-beta T cell",
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-              "CD8-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
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-            ],
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-            ],
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-          "token_changes": [
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-              "action": "removed",
-              "policy_records": [
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-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-              "relation_label": "lacks_plasma_membrane_part",
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-              "asserted": "True",
-              "pr": "PR:000025402",
-              "pr_label": "T cell receptor co-receptor CD8",
-              "cd_synonym": "CD8 (label)",
-              "uniprot_human": "",
-              "uniprot_mouse": "",
-              "xrefs": "",
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-              "hgnc_symbol": "",
-              "legacy_tokens": [
-                "CD8"
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-              "enhanced_tokens": [],
-              "resolution_paths": []
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-          ]
-        },
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-          "label": "naive thymus-derived CD4-positive, alpha-beta T cell",
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-              "CD4+",
-              "CD8-"
-            ],
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
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-              "CD3+",
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-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
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-                  "source_token": "CD8A",
-                  "tokens": [
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-                }
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-            }
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-            "candidate_sources": [
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-          },
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-              "token": "CD8",
-              "level": "negative",
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-              "hgnc_symbol": "",
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-                "CD4+",
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-                "TCRAB+/TCRGD- (no axiom on any alt.)",
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-                "TCRAB+/TCRGD- (no axiom on any alt.)",
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null,
-              "rank": 69,
-              "rank_best": 60,
-              "rank_worst": 177
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        },
-        "111": {
-          "case_id": "provisional/SOULCAP:SC000066/Exact",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000066",
-          "match_type": "Exact",
-          "targets": [
-            "CL:0000624"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": false,
-          "rank": 69,
-          "rank_best": 60,
-          "rank_worst": 177,
-          "missing_targets": [],
-          "candidates": [
-            {
-              "cl_id": "CL:0002455",
-              "label": "CD8-alpha-negative plasmacytoid dendritic cell",
-              "score": 15,
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-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD8-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              "lexical_evidence": null
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-            {
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-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD8-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001057",
-              "label": "myeloid dendritic cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD123-"
-              ],
-              "gaps": [
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000989",
-              "label": "CD11c-low plasmacytoid dendritic cell",
-              "score": 11,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4+",
-                "CD8-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000992",
-              "label": "immature CD11c-low plasmacytoid dendritic cell",
-              "score": 11,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4+",
-                "CD8-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [
-            {
-              "cl_id": "CL:0000624",
-              "label": "CD4-positive, alpha-beta T cell",
-              "score": 5,
-              "matched": [
-                "CD4+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null,
-              "rank": 69,
-              "rank_best": 60,
-              "rank_worst": 177
-            }
-          ],
-          "status": "below_top_5",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000067/Exact",
-      "subject_id": "SOULCAP:SC000067",
-      "label": "CD8+ alpha/beta T cell",
-      "cohort": "provisional",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000625"
-      ],
-      "outcome": "regressed",
-      "lost_top5": true,
-      "gained_top5": false,
-      "ranks": {
-        "000": 4,
-        "001": 4,
-        "010": 124,
-        "011": 124,
-        "100": 4,
-        "101": 4,
-        "110": 124,
-        "111": 124
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": 4,
-          "rank_after": 4,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "000",
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-          "rank_before": 4,
-          "rank_after": 124,
-          "top5_delta": -1
-        },
-        {
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-          "top5_delta": -1
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-          "rank_after": 124,
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-        {
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-          "top5_delta": -1
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-        {
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-          "before": "110",
-          "after": "111",
-          "rank_before": 124,
-          "rank_after": 124,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRab",
-        "Abbreviation": "CD8+ TCRab T cell",
-        "Full Name": "CD8+ alpha/beta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) CD4- CD8+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000037",
-          "label": "hematopoietic stem cell",
-          "expected_target": false,
-          "before": {
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-            "label": "hematopoietic stem cell",
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-              "CD4-"
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-              "CD45+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
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-              "CD8+"
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-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD8+",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
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-            "disqualified": false,
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-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
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-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
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-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
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-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                  "marker_token": "CD8",
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-            }
-          ]
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-        {
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-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
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-      "ranks": {
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-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000809",
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-                "CD8+"
-              ],
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 0,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002427",
-              "label": "resting double-positive thymocyte",
-              "score": 8,
-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-              "contradictions": [],
-              "hint_bonus": 0,
-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002428",
-              "label": "double-positive blast",
-              "score": 8,
-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-              "disqualified": false,
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002429",
-              "label": "CD69-positive double-positive thymocyte",
-              "score": 8,
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-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-              "lexical_evidence": null
-            }
-          ],
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-          "note": ""
-        },
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-          "case_id": "provisional/SOULCAP:SC000068/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000068",
-          "match_type": "Broad",
-          "targets": [
-            "CL:0000789"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": true,
-          "rank": null,
-          "rank_best": null,
-          "rank_worst": null,
-          "missing_targets": [
-            "CL:0000789"
-          ],
-          "candidates": [
-            {
-              "cl_id": "CL:0002039",
-              "label": "immature NK T cell stage I, mouse",
-              "score": 9,
-              "matched": [
-                "CD4+ (dim)",
-                "CD8+ (dim)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000809",
-              "label": "double-positive, alpha-beta thymocyte",
-              "score": 8,
-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002427",
-              "label": "resting double-positive thymocyte",
-              "score": 8,
-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 0,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002428",
-              "label": "double-positive blast",
-              "score": 8,
-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 0,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002429",
-              "label": "CD69-positive double-positive thymocyte",
-              "score": 8,
-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 0,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [],
-          "status": "target_not_in_index",
-          "note": ""
-        },
-        "110": {
-          "case_id": "provisional/SOULCAP:SC000068/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000068",
-          "match_type": "Broad",
-          "targets": [
-            "CL:0000789"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": true,
-          "rank": null,
-          "rank_best": null,
-          "rank_worst": null,
-          "missing_targets": [
-            "CL:0000789"
-          ],
-          "candidates": [
-            {
-              "cl_id": "CL:0002455",
-              "label": "CD8-alpha-negative plasmacytoid dendritic cell",
-              "score": 15,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002456",
-              "label": "CD8-alpha-positive plasmacytoid dendritic cell",
-              "score": 15,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001057",
-              "label": "myeloid dendritic cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD123-"
-              ],
-              "gaps": [
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000989",
-              "label": "CD11c-low plasmacytoid dendritic cell",
-              "score": 11,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000992",
-              "label": "immature CD11c-low plasmacytoid dendritic cell",
-              "score": 11,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [],
-          "status": "target_not_in_index",
-          "note": ""
-        },
-        "111": {
-          "case_id": "provisional/SOULCAP:SC000068/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000068",
-          "match_type": "Broad",
-          "targets": [
-            "CL:0000789"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": true,
-          "rank": null,
-          "rank_best": null,
-          "rank_worst": null,
-          "missing_targets": [
-            "CL:0000789"
-          ],
-          "candidates": [
-            {
-              "cl_id": "CL:0002455",
-              "label": "CD8-alpha-negative plasmacytoid dendritic cell",
-              "score": 15,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002456",
-              "label": "CD8-alpha-positive plasmacytoid dendritic cell",
-              "score": 15,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001057",
-              "label": "myeloid dendritic cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD123-"
-              ],
-              "gaps": [
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000989",
-              "label": "CD11c-low plasmacytoid dendritic cell",
-              "score": 11,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000992",
-              "label": "immature CD11c-low plasmacytoid dendritic cell",
-              "score": 11,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [],
-          "status": "target_not_in_index",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000069/Broad",
-      "subject_id": "SOULCAP:SC000069",
-      "label": "CD4- and CD8- alpha/beta T cell",
-      "cohort": "provisional",
-      "match_type": "Broad",
-      "targets": [
-        "CL:0000789"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": null,
-        "001": null,
-        "010": null,
-        "011": null,
-        "100": null,
-        "101": null,
-        "110": null,
-        "111": null
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": null,
-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "000",
-          "after": "010",
-          "rank_before": null,
-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "000",
-          "after": "001",
-          "rank_before": null,
-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "001",
-          "after": "101",
-          "rank_before": null,
-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "001",
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-          "rank_before": null,
-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "010",
-          "after": "110",
-          "rank_before": null,
-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "010",
-          "after": "011",
-          "rank_before": null,
-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "011",
-          "after": "111",
-          "rank_before": null,
-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "100",
-          "after": "110",
-          "rank_before": null,
-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "100",
-          "after": "101",
-          "rank_before": null,
-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "101",
-          "after": "111",
-          "rank_before": null,
-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "110",
-          "after": "111",
-          "rank_before": null,
-          "rank_after": null,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRab",
-        "Abbreviation": "CD4-/CD8- TCRab T cell",
-        "Full Name": "CD4- and CD8- alpha/beta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) CD4- CD8-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000803",
-          "label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell",
-          "expected_target": false,
-          "before": {
-            "cl_id": "CL:0000803",
-            "label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell",
-            "score": 11,
-            "matched": [
-              "CD4-",
-              "CD8-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 3,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 1
-          },
-          "after": {
-            "cl_id": "CL:0000803",
-            "label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell",
-            "score": 7,
-            "matched": [
-              "CD4-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD8-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 3,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 116
-          },
-          "token_changes": [
-            {
-              "token": "CD8",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD8",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
-                  "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0000803",
-              "cell_label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "True",
-              "pr": "PR:000001084",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
-              "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-              "uniprot_human": "UniProtKB:P01732",
-              "uniprot_mouse": "UniProtKB:P01731",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
-              "legacy_tokens": [
-                "CD8",
-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000924",
-          "label": "CD4-negative, CD8-negative type I NK T cell",
-          "expected_target": false,
-          "before": {
-            "cl_id": "CL:0000924",
-            "label": "CD4-negative, CD8-negative type I NK T cell",
-            "score": 11,
-            "matched": [
-              "CD4-",
-              "CD8-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 3,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 2
-          },
-          "after": {
-            "cl_id": "CL:0000924",
-            "label": "CD4-negative, CD8-negative type I NK T cell",
-            "score": 7,
-            "matched": [
-              "CD4-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD8-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 3,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 117
-          },
-          "token_changes": [
-            {
-              "token": "CD8",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD8",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
-                  "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0000924",
-              "cell_label": "CD4-negative, CD8-negative type I NK T cell",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "True",
-              "pr": "PR:000001084",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
-              "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-              "uniprot_human": "UniProtKB:P01732",
-              "uniprot_mouse": "UniProtKB:P01731",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
-              "legacy_tokens": [
-                "CD8",
-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000928",
-          "label": "activated CD4-negative, CD8-negative type I NK T cell",
-          "expected_target": false,
-          "before": {
-            "cl_id": "CL:0000928",
-            "label": "activated CD4-negative, CD8-negative type I NK T cell",
-            "score": 11,
-            "matched": [
-              "CD4-",
-              "CD8-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 3,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 3
-          },
-          "after": {
-            "cl_id": "CL:0000928",
-            "label": "activated CD4-negative, CD8-negative type I NK T cell",
-            "score": 7,
-            "matched": [
-              "CD4-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD8-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 3,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 118
-          },
-          "token_changes": [
-            {
-              "token": "CD8",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD8",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
-                  "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0000928",
-              "cell_label": "activated CD4-negative, CD8-negative type I NK T cell",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001084",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
-              "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-              "uniprot_human": "UniProtKB:P01732",
-              "uniprot_mouse": "UniProtKB:P01731",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
-              "legacy_tokens": [
-                "CD8",
-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000929",
-          "label": "CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma",
-          "expected_target": false,
-          "before": {
-            "cl_id": "CL:0000929",
-            "label": "CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma",
-            "score": 11,
-            "matched": [
-              "CD4-",
-              "CD8-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 3,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 4
-          },
-          "after": {
-            "cl_id": "CL:0000929",
-            "label": "CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma",
-            "score": 7,
-            "matched": [
-              "CD4-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD8-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 3,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 119
-          },
-          "token_changes": [
-            {
-              "token": "CD8",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD8",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
-                  "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0000929",
-              "cell_label": "CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001084",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
-              "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-              "uniprot_human": "UniProtKB:P01732",
-              "uniprot_mouse": "UniProtKB:P01731",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
-              "legacy_tokens": [
-                "CD8",
-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000930",
-          "label": "CD4-negative, CD8-negative type I NK T cell secreting interleukin-4",
-          "expected_target": false,
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-            "label": "CD4-negative, CD8-negative type I NK T cell secreting interleukin-4",
-            "score": 11,
-            "matched": [
-              "CD4-",
-              "CD8-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 3,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 5
-          },
-          "after": {
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-            "score": 7,
-            "matched": [
-              "CD4-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD8-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 3,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 120
-          },
-          "token_changes": [
-            {
-              "token": "CD8",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD8",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
-                  "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
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-              "cell_label": "CD4-negative, CD8-negative type I NK T cell secreting interleukin-4",
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-              "relation_label": "lacks_plasma_membrane_part",
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-              "asserted": "False",
-              "pr": "PR:000001084",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
-              "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-              "uniprot_human": "UniProtKB:P01732",
-              "uniprot_mouse": "UniProtKB:P01731",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
-              "legacy_tokens": [
-                "CD8",
-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0001021",
-          "label": "CD34-positive, CD38-positive common lymphoid progenitor",
-          "expected_target": false,
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-            "label": "CD34-positive, CD38-positive common lymphoid progenitor",
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-            "matched": [
-              "CD14- (1 of 3 alt.)",
-              "CD19- (1 of 2 alt.)",
-              "CD45+",
-              "CD4-",
-              "CD8-"
-            ],
-            "gaps": [
-              "CD123-",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [
-              "CD3+"
-            ],
-            "hint_bonus": 0,
-            "disqualified": true,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 409
-          },
-          "after": {
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-            "label": "CD34-positive, CD38-positive common lymphoid progenitor",
-            "score": 16,
-            "matched": [
-              "CD14- (1 of 3 alt.)",
-              "CD19- (1 of 2 alt.)",
-              "CD45+",
-              "CD4-"
-            ],
-            "gaps": [
-              "CD123-",
-              "CD3+",
-              "TCRAB+/TCRGD- (no axiom on any alt.)",
-              "CD8-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 0,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 4
-          },
-          "token_changes": [
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
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-              "uniprot_human": "UniProtKB:P01732",
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-              "hgnc_id": "HGNC:1706",
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-              "cell_label": "fetal liver hematopoietic progenitor cell",
-              "relation": "RO:0002104",
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-              "pr_label": "signal transducer CD24",
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-              "uniprot_human": "UniProtKB:P25063",
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-              "hgnc_id": "HGNC:1645",
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-                  "via": "exact_alias",
-                  "source_token": "CD24",
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-                    "CD24"
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-                },
-                {
-                  "via": "pro_id",
-                  "pr": "PR:000001932",
-                  "tokens": [
-                    "CD24"
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-                }
-              ]
-            }
-          ]
-        }
-      ],
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-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD45+",
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              ],
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-            },
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-                "CD8-"
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-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000929",
-              "label": "CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma",
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-                "CD8-"
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-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000930",
-              "label": "CD4-negative, CD8-negative type I NK T cell secreting interleukin-4",
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-                "CD8-"
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-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "candidate_sources": [
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-          ],
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-              "label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell",
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-                "CD4-",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-              "lexical_evidence": null
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-            {
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-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "disqualified": false,
-              "candidate_sources": [
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-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000928",
-              "label": "activated CD4-negative, CD8-negative type I NK T cell",
-              "score": 11,
-              "matched": [
-                "CD4-",
-                "CD8-"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-              "disqualified": false,
-              "candidate_sources": [
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-              "lexical_evidence": null
-            },
-            {
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-              "label": "CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma",
-              "score": 11,
-              "matched": [
-                "CD4-",
-                "CD8-"
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-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-              "lexical_evidence": null
-            },
-            {
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-              "label": "CD4-negative, CD8-negative type I NK T cell secreting interleukin-4",
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-                "CD8-"
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-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
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-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            {
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-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
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-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-            },
-            {
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-              "label": "fetal liver hematopoietic progenitor cell",
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-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4-"
-              ],
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-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
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-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001021",
-              "label": "CD34-positive, CD38-positive common lymphoid progenitor",
-              "score": 16,
-              "matched": [
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-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4-"
-              ],
-              "gaps": [
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-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-            },
-            {
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-              "label": "CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell",
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-                "CD19- (1 of 2 alt.)",
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-                "CD45+",
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-                "TCRAB+/TCRGD- (no axiom on any alt.)",
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-                "CD15-/CD66B- (no axiom on any alt.)",
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-            {
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-                "CD19- (1 of 2 alt.)",
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-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-                "CD16-"
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-              "candidate_sources": [
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-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD4-"
-              ],
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-                "CD45+",
-                "CD3+",
-                "TCRAB+/TCRGD- (no axiom on any alt.)",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [],
-          "status": "target_not_in_index",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000070/Broad",
-      "subject_id": "SOULCAP:SC000070",
-      "label": "CD4+ gamma/delta T cell",
-      "cohort": "provisional",
-      "match_type": "Broad",
-      "targets": [
-        "CL:0000798"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": null,
-        "001": null,
-        "010": null,
-        "011": null,
-        "100": null,
-        "101": null,
-        "110": null,
-        "111": null
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": null,
-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "000",
-          "after": "010",
-          "rank_before": null,
-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "000",
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-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "001",
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-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
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-          "before": "001",
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-          "rank_after": null,
-          "top5_delta": 0
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-          "rank_after": null,
-          "top5_delta": 0
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-          "top5_delta": 0
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-          "factor": "A",
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-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "100",
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-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "100",
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-          "rank_after": null,
-          "top5_delta": 0
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-        {
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-          "before": "101",
-          "after": "111",
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-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
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-          "rank_before": null,
-          "rank_after": null,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRgd",
-        "Abbreviation": "CD4+ TCRgd T cell",
-        "Full Name": "CD4+ gamma/delta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) CD4+ CD8-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000895",
-          "label": "naive thymus-derived CD4-positive, alpha-beta T cell",
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-              "CD4+",
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-              "CD19-/CD20- (no axiom on any alt.)",
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-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
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-              "CD4+"
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-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
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-              "CD15-/CD66B- (no axiom on any alt.)",
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-            "disqualified": false,
-            "candidate_sources": [
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-            "rank": 11
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-          "token_changes": [
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-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
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-                  "marker_token": "CD8",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
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-              "cell_label": "naive thymus-derived CD4-positive, alpha-beta T cell",
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-              "asserted": "False",
-              "pr": "PR:000025402",
-              "pr_label": "T cell receptor co-receptor CD8",
-              "cd_synonym": "CD8 (label)",
-              "uniprot_human": "",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "",
-              "hgnc_symbol": "",
-              "legacy_tokens": [
-                "CD8"
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-              "enhanced_tokens": [],
-              "resolution_paths": []
-            }
-          ]
-        },
-        {
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-              "CD11C:not:high (dim) (1 of 2 alt.)"
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-              "CD123-",
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-              "CD4+",
-              "CD8-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
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-            "contradictions": [
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-            ],
-            "hint_bonus": 1,
-            "disqualified": true,
-            "candidate_sources": [
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-            "lexical_evidence": null,
-            "rank": 440
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD123-",
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-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD4+",
-              "CD8-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
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-            "rank": 4
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-              "level": "positive",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD3",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
-                  "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
-                }
-              ],
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-            }
-          ],
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-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "False",
-              "pr": "PR:000001020",
-              "pr_label": "CD3 epsilon",
-              "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
-              "xrefs": "IUPHARobj:2742",
-              "hgnc_id": "HGNC:1674",
-              "hgnc_symbol": "CD3E",
-              "legacy_tokens": [
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-                "CD3E"
-              ],
-              "enhanced_tokens": [
-                "CD3E"
-              ],
-              "resolution_paths": [
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-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD3E",
-                  "tokens": [
-                    "CD3E"
-                  ]
-                }
-              ]
-            },
-            {
-              "cell": "CL:0000989",
-              "cell_label": "CD11c-low plasmacytoid dendritic cell",
-              "relation": "RO:0002104",
-              "relation_label": "has plasma membrane part",
-              "sense": "positive",
-              "asserted": "True",
-              "pr": "PR:000001014",
-              "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RABC",
-              "cd_synonym": "CD45R (related); CD45RABC (label)",
-              "uniprot_human": "UniProtKB:P08575-3",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "HGNC:9666",
-              "hgnc_symbol": "PTPRC",
-              "legacy_tokens": [
-                "CD45R",
-                "CD45RABC"
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-                  "source_token": "CD45RABC",
-                  "tokens": [
-                    "CD45RABC"
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-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000992",
-          "label": "immature CD11c-low plasmacytoid dendritic cell",
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-              "CD8-",
-              "CD15-/CD66B- (no axiom on any alt.)",
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-            "contradictions": [
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-            "hint_bonus": 1,
-            "disqualified": true,
-            "candidate_sources": [
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-            ],
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-            "rank": 441
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-              "CD123-",
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-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD4+",
-              "CD8-",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
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-            "contradictions": [],
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-            "candidate_sources": [
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-            ],
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-            "rank": 5
-          },
-          "token_changes": [
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-              "level": "positive",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD3",
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-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD3",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
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-              ],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD28LG",
-              "level": "low",
-              "action": "removed",
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-              "conflicting_alias": false
-            },
-            {
-              "token": "CD28LG1",
-              "level": "low",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD28LG2",
-              "level": "low",
-              "action": "removed",
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-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
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-              "relation": "RO:0015016",
-              "relation_label": "has low plasma membrane amount",
-              "sense": "low",
-              "asserted": "True",
-              "pr": "PR:000001412",
-              "pr_label": "CD86 molecule",
-              "cd_synonym": "CD28LG2 (related); CD86 (label)",
-              "uniprot_human": "UniProtKB:P42081",
-              "uniprot_mouse": "UniProtKB:P42082",
-              "xrefs": "IUPHARobj:2745",
-              "hgnc_id": "HGNC:1705",
-              "hgnc_symbol": "CD86",
-              "legacy_tokens": [
-                "CD28LG2",
-                "CD86"
-              ],
-              "enhanced_tokens": [
-                "CD86"
-              ],
-              "resolution_paths": [
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-                  "source_token": "CD86",
-                  "tokens": [
-                    "CD86"
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-                }
-              ]
-            },
-            {
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-              "relation_label": "has low plasma membrane amount",
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-              "pr": "PR:000001438",
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-              "cd_synonym": "CD28LG (related); CD28LG1 (related); CD80 (label)",
-              "uniprot_human": "UniProtKB:P33681",
-              "uniprot_mouse": "UniProtKB:Q00609",
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-              "hgnc_id": "HGNC:1700",
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-              "uniprot_mouse": "UniProtKB:P22646",
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-                  "source_token": "CD3E",
-                  "tokens": [
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-              ]
-            },
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-              "asserted": "False",
-              "pr": "PR:000001014",
-              "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RABC",
-              "cd_synonym": "CD45R (related); CD45RABC (label)",
-              "uniprot_human": "UniProtKB:P08575-3",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "HGNC:9666",
-              "hgnc_symbol": "PTPRC",
-              "legacy_tokens": [
-                "CD45R",
-                "CD45RABC"
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-                  "source_token": "CD45RABC",
-                  "tokens": [
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-                }
-              ]
-            }
-          ]
-        },
-        {
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-          "expected_target": false,
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-              "CD4+",
-              "CD8-"
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-            "gaps": [
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-              "CD4+"
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD8-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
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-            "candidate_sources": [
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-            "rank": 18
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-                "CD8"
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-          ]
-        },
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD3+",
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-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-            "candidate_sources": [
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
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-              "hgnc_symbol": "",
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-              "uniprot_human": "UniProtKB:P51679",
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-                }
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-            }
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-        },
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-          "token_changes": [
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-                  "marker_token": "CD8",
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-                "CD4+",
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-                "CD4+",
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-            {
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-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
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-              "lexical_evidence": null
-            }
-          ],
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-          "status": "target_not_in_index",
-          "note": ""
-        },
-        "111": {
-          "case_id": "provisional/SOULCAP:SC000070/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000070",
-          "match_type": "Broad",
-          "targets": [
-            "CL:0000798"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": true,
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-          "rank_best": null,
-          "rank_worst": null,
-          "missing_targets": [
-            "CL:0000798"
-          ],
-          "candidates": [
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-              "cl_id": "CL:0002455",
-              "label": "CD8-alpha-negative plasmacytoid dendritic cell",
-              "score": 15,
-              "matched": [
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-                "CD45+",
-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD8-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "candidate_sources": [
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-              ],
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-            },
-            {
-              "cl_id": "CL:0002456",
-              "label": "CD8-alpha-positive plasmacytoid dendritic cell",
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-                "CD45+",
-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD8-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001057",
-              "label": "myeloid dendritic cell, human",
-              "score": 13,
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-                "CD19- (1 of 2 alt.)",
-                "CD123-"
-              ],
-              "gaps": [
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-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8-",
-                "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
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-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000989",
-              "label": "CD11c-low plasmacytoid dendritic cell",
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-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
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-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
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-            {
-              "cl_id": "CL:0000992",
-              "label": "immature CD11c-low plasmacytoid dendritic cell",
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-                "CD11C:not:high (dim) (1 of 2 alt.)"
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-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8-",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [],
-          "status": "target_not_in_index",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000071/Broad",
-      "subject_id": "SOULCAP:SC000071",
-      "label": "CD8+ gamma/delta T cell",
-      "cohort": "provisional",
-      "match_type": "Broad",
-      "targets": [
-        "CL:0000798"
-      ],
-      "outcome": "unchanged",
-      "lost_top5": false,
-      "gained_top5": false,
-      "ranks": {
-        "000": null,
-        "001": null,
-        "010": null,
-        "011": null,
-        "100": null,
-        "101": null,
-        "110": null,
-        "111": null
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": null,
-          "rank_after": null,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
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-          "rank_after": null,
-          "top5_delta": 0
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-        {
-          "factor": "D",
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-          "rank_before": null,
-          "rank_after": null,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRgd",
-        "Abbreviation": "CD8+ TCRgd T cell",
-        "Full Name": "CD8+ gamma/delta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) CD4- CD8+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000037",
-          "label": "hematopoietic stem cell",
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-              "uniprot_mouse": "UniProtKB:P22646",
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-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
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-            },
-            {
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-              "resolution_paths": []
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-              "xrefs": "",
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-            }
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-        },
-        {
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-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-              "CD3+",
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-          ],
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-      "targets": [
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-      "outcome": "unchanged",
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-      ],
-      "source_profile": {
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-        "WB or PBMC": "",
-        "Parent": "TCRgd",
-        "Abbreviation": "CD4+/CD8+ TCRgd",
-        "Full Name": "CD4+/CD8+ gamma/delta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) CD4+ CD8+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
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-          "cl_id": "CL:0000809",
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-            "rank": 191
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-              "policy_records": [
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-                  "protein_resolution": "withhold",
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-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
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-              "uniprot_human": "UniProtKB:P01732",
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-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
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-              "pr": "PR:000025402",
-              "pr_label": "T cell receptor co-receptor CD8",
-              "cd_synonym": "CD8 (label)",
-              "uniprot_human": "",
-              "uniprot_mouse": "",
-              "xrefs": "",
-              "hgnc_id": "",
-              "hgnc_symbol": "",
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-              ],
-              "enhanced_tokens": [],
-              "resolution_paths": []
-            },
-            {
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-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain isoform 1",
-              "cd_synonym": "CD8 (label); CD8A (exact)",
-              "uniprot_human": "UniProtKB:P01732-1",
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-              "xrefs": "",
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-          ]
-        },
-        {
-          "cl_id": "CL:0000989",
-          "label": "CD11c-low plasmacytoid dendritic cell",
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-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD123-",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD4+",
-              "CD8+",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [
-              "CD3+"
-            ],
-            "hint_bonus": 1,
-            "disqualified": true,
-            "candidate_sources": [
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-            ],
-            "lexical_evidence": null,
-            "rank": 398
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-              "CD123-",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD4+",
-              "CD8+",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
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-            ],
-            "lexical_evidence": null,
-            "rank": 4
-          },
-          "token_changes": [
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-              "level": "positive",
-              "action": "removed",
-              "policy_records": [],
-              "conflicting_alias": false
-            },
-            {
-              "token": "CD3",
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-              "action": "removed",
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-              ],
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-              "pr": "PR:000001020",
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-              "uniprot_human": "UniProtKB:P07766",
-              "uniprot_mouse": "UniProtKB:P22646",
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-              "uniprot_human": "UniProtKB:P08575-3",
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-              "xrefs": "",
-              "hgnc_id": "HGNC:9666",
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-                  "tokens": [
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-          ]
-        },
-        {
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-              "CD8+",
-              "CD15-/CD66B- (no axiom on any alt.)",
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-            "hint_bonus": 1,
-            "disqualified": true,
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-            "lexical_evidence": null,
-            "rank": 399
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-              "CD123-",
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-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD4+",
-              "CD8+",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
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-            "candidate_sources": [
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-            "rank": 5
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-            },
-            {
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-            },
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-        },
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-                "CD8+ (dim)"
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-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
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-            {
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-                "CD8+"
-              ],
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-                "CD3+",
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-            },
-            {
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-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
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-              "cl_id": "CL:0002429",
-              "label": "CD69-positive double-positive thymocyte",
-              "score": 8,
-              "matched": [
-                "CD4+",
-                "CD8+"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD19-/CD20- (no axiom on any alt.)",
-                "CD123-",
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 0,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [],
-          "status": "target_not_in_index",
-          "note": ""
-        },
-        "110": {
-          "case_id": "provisional/SOULCAP:SC000072/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000072",
-          "match_type": "Broad",
-          "targets": [
-            "CL:0000798"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": true,
-          "rank": null,
-          "rank_best": null,
-          "rank_worst": null,
-          "missing_targets": [
-            "CL:0000798"
-          ],
-          "candidates": [
-            {
-              "cl_id": "CL:0002455",
-              "label": "CD8-alpha-negative plasmacytoid dendritic cell",
-              "score": 15,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002456",
-              "label": "CD8-alpha-positive plasmacytoid dendritic cell",
-              "score": 15,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
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-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001057",
-              "label": "myeloid dendritic cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD123-"
-              ],
-              "gaps": [
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000989",
-              "label": "CD11c-low plasmacytoid dendritic cell",
-              "score": 11,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000992",
-              "label": "immature CD11c-low plasmacytoid dendritic cell",
-              "score": 11,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [],
-          "status": "target_not_in_index",
-          "note": ""
-        },
-        "111": {
-          "case_id": "provisional/SOULCAP:SC000072/Broad",
-          "cohort": "provisional",
-          "subject_id": "SOULCAP:SC000072",
-          "match_type": "Broad",
-          "targets": [
-            "CL:0000798"
-          ],
-          "evidence_reference": "mappings/curated_mappings.tsv",
-          "uncertain": true,
-          "rank": null,
-          "rank_best": null,
-          "rank_worst": null,
-          "missing_targets": [
-            "CL:0000798"
-          ],
-          "candidates": [
-            {
-              "cl_id": "CL:0002455",
-              "label": "CD8-alpha-negative plasmacytoid dendritic cell",
-              "score": 15,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0002456",
-              "label": "CD8-alpha-positive plasmacytoid dendritic cell",
-              "score": 15,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD4+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0001057",
-              "label": "myeloid dendritic cell, human",
-              "score": 13,
-              "matched": [
-                "CD14- (1 of 3 alt.)",
-                "CD19- (1 of 2 alt.)",
-                "CD123-"
-              ],
-              "gaps": [
-                "CD45+",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000989",
-              "label": "CD11c-low plasmacytoid dendritic cell",
-              "score": 11,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            },
-            {
-              "cl_id": "CL:0000992",
-              "label": "immature CD11c-low plasmacytoid dendritic cell",
-              "score": 11,
-              "matched": [
-                "CD19- (1 of 2 alt.)",
-                "CD45+",
-                "CD11C:not:high (dim) (1 of 2 alt.)"
-              ],
-              "gaps": [
-                "CD14-/CD33-/CD64- (no axiom on any alt.)",
-                "CD123-",
-                "CD3+",
-                "TCRAB-/TCRGD+ (no axiom on any alt.)",
-                "CD4+",
-                "CD8+",
-                "CD15-/CD66B- (no axiom on any alt.)",
-                "CD16-"
-              ],
-              "contradictions": [],
-              "hint_bonus": 1,
-              "disqualified": false,
-              "candidate_sources": [
-                "marker_axioms"
-              ],
-              "lexical_evidence": null
-            }
-          ],
-          "target_results": [],
-          "status": "target_not_in_index",
-          "note": ""
-        }
-      }
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000073/Exact",
-      "subject_id": "SOULCAP:SC000073",
-      "label": "CD4-/CD8- gamma/delta T cell",
-      "cohort": "provisional",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000803"
-      ],
-      "outcome": "regressed",
-      "lost_top5": true,
-      "gained_top5": false,
-      "ranks": {
-        "000": 1,
-        "001": 1,
-        "010": 117,
-        "011": 117,
-        "100": 1,
-        "101": 1,
-        "110": 117,
-        "111": 117
-      },
-      "factor_edges": [
-        {
-          "factor": "A",
-          "before": "000",
-          "after": "100",
-          "rank_before": 1,
-          "rank_after": 1,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "000",
-          "after": "010",
-          "rank_before": 1,
-          "rank_after": 117,
-          "top5_delta": -1
-        },
-        {
-          "factor": "D",
-          "before": "000",
-          "after": "001",
-          "rank_before": 1,
-          "rank_after": 1,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "001",
-          "after": "101",
-          "rank_before": 1,
-          "rank_after": 1,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "001",
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-          "rank_before": 1,
-          "rank_after": 117,
-          "top5_delta": -1
-        },
-        {
-          "factor": "A",
-          "before": "010",
-          "after": "110",
-          "rank_before": 117,
-          "rank_after": 117,
-          "top5_delta": 0
-        },
-        {
-          "factor": "D",
-          "before": "010",
-          "after": "011",
-          "rank_before": 117,
-          "rank_after": 117,
-          "top5_delta": 0
-        },
-        {
-          "factor": "A",
-          "before": "011",
-          "after": "111",
-          "rank_before": 117,
-          "rank_after": 117,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "100",
-          "after": "110",
-          "rank_before": 1,
-          "rank_after": 117,
-          "top5_delta": -1
-        },
-        {
-          "factor": "D",
-          "before": "100",
-          "after": "101",
-          "rank_before": 1,
-          "rank_after": 1,
-          "top5_delta": 0
-        },
-        {
-          "factor": "P",
-          "before": "101",
-          "after": "111",
-          "rank_before": 1,
-          "rank_after": 117,
-          "top5_delta": -1
-        },
-        {
-          "factor": "D",
-          "before": "110",
-          "after": "111",
-          "rank_before": 117,
-          "rank_after": 117,
-          "top5_delta": 0
-        }
-      ],
-      "source_profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRgd",
-        "Abbreviation": "CD4-/CD8- TCRgd",
-        "Full Name": "CD4-/CD8- gamma/delta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) CD4- CD8-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "candidate_changes": [
-        {
-          "cl_id": "CL:0000803",
-          "label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell",
-          "expected_target": true,
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-            "matched": [
-              "CD4-",
-              "CD8-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
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-            "rank": 1
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-          "after": {
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-            "label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell",
-            "score": 6,
-            "matched": [
-              "CD4-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD8-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
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-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 117
-          },
-          "token_changes": [
-            {
-              "token": "CD8",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD8",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
-                  "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
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-            {
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-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "True",
-              "pr": "PR:000001084",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
-              "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-              "uniprot_human": "UniProtKB:P01732",
-              "uniprot_mouse": "UniProtKB:P01731",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
-              "legacy_tokens": [
-                "CD8",
-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
-              ],
-              "resolution_paths": [
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                },
-                {
-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
-                }
-              ]
-            }
-          ]
-        },
-        {
-          "cl_id": "CL:0000924",
-          "label": "CD4-negative, CD8-negative type I NK T cell",
-          "expected_target": false,
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-            "label": "CD4-negative, CD8-negative type I NK T cell",
-            "score": 10,
-            "matched": [
-              "CD4-",
-              "CD8-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 2,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 2
-          },
-          "after": {
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-            "label": "CD4-negative, CD8-negative type I NK T cell",
-            "score": 6,
-            "matched": [
-              "CD4-"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD19-/CD20- (no axiom on any alt.)",
-              "CD123-",
-              "CD45+",
-              "CD3+",
-              "TCRAB-/TCRGD+ (no axiom on any alt.)",
-              "CD8-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD16-"
-            ],
-            "contradictions": [],
-            "hint_bonus": 2,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "rank": 118
-          },
-          "token_changes": [
-            {
-              "token": "CD8",
-              "level": "negative",
-              "action": "removed",
-              "policy_records": [
-                {
-                  "marker_token": "CD8",
-                  "representation": "unresolved",
-                  "protein_resolution": "withhold",
-                  "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-                  "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
-                  "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
-                }
-              ],
-              "conflicting_alias": false
-            }
-          ],
-          "relevant_axioms": [
-            {
-              "cell": "CL:0000924",
-              "cell_label": "CD4-negative, CD8-negative type I NK T cell",
-              "relation": "CL:4030046",
-              "relation_label": "lacks_plasma_membrane_part",
-              "sense": "negative",
-              "asserted": "True",
-              "pr": "PR:000001084",
-              "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
-              "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-              "uniprot_human": "UniProtKB:P01732",
-              "uniprot_mouse": "UniProtKB:P01731",
-              "xrefs": "",
-              "hgnc_id": "HGNC:1706",
-              "hgnc_symbol": "CD8A",
-              "legacy_tokens": [
-                "CD8",
-                "CD8A"
-              ],
-              "enhanced_tokens": [
-                "CD8A"
-              ],
-              "resolution_paths": [
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-                  "via": "exact_alias",
-                  "source_token": "CD8A",
-                  "tokens": [
-                    "CD8A"
-                  ]
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diff --git a/reports/resolver-refinement/audit/audit_dashboard.html b/reports/resolver-refinement/audit/audit_dashboard.html
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-<header><div class="eyebrow">SOULCAP × Cell Ontology</div><h1>Mapping audit</h1><p>A local review of mapping coverage, phenotype evidence, and source consistency.</p><p id="timestamp"></p></header>
-<noscript>This dashboard needs JavaScript for filtering. Open <a href="audit_summary.md">the Markdown summary</a> or <a href="audit_data.json">the full audit data</a> instead.</noscript>
-<main>
-<div class="cards" id="cards"></div>
-<div class="notice" id="notice"></div>
-<section class="panel" id="evaluation-overview"><h2>Matcher evaluation</h2><p id="evaluation-status"></p><div id="evaluation-metrics"></div></section>
-<div class="grid">
-<section class="panel" aria-labelledby="evidence-title"><h2 id="evidence-title">Marker evidence</h2><p class="foot">Counts refer to proposal records, not distinct cell types.</p><div id="evidence-bars"></div></section>
-<section class="panel" aria-labelledby="review-title"><h2 id="review-title">Review status</h2><p class="foot">Curator review and marker support are separate evidence sources.</p><div id="review-bars"></div></section>
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-<h2 id="view-title"></h2><p id="description"></p>
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-<div class="table-wrap"><table><caption id="caption" style="text-align:left;padding:8px 12px;font-size:12px;color:#506576">Select a column heading to sort.</caption><thead id="thead"></thead><tbody id="tbody"></tbody></table><p id="empty" hidden>No records match these filters.</p></div>
-</section>
-<section class="panel" style="margin-top:20px"><h2>How to interpret this audit</h2><ul id="limitations"></ul><div class="links"><a href="audit_summary.md">Markdown summary</a><a href="audit_data.json" download>Download audit JSON</a></div></section>
-<p class="foot">Generated by soulcap-audit. Re-run the command to refresh this snapshot. No external scripts, fonts, or services are used.</p>
-</main>
-<script id="audit-data" type="application/json">{"schema_version": 1, "resolution_mode": "explicit_marker_policy", "resolution_inputs": {"marker_mappings\\marker_protein_gene.csv": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7", "marker_mappings\\marker_resolution.tsv": "317578b4b7fb1a9837b9a61fa85c2dc1ea6469eab4404b0435476ba4a12a1f84"}, "generated_utc": "2026-09-11T04:13:52.853363+00:00", "summary": {"registered_entities": 127, "source_rows": 127, "mapping_records": 80, "source_entities_with_proposals": 80, "source_entities_without_proposals": 47, "unresolved_source_rows": 0, "uncertain_proposals": 8, "invalid_marker_cells": 26, "invalid_profile_rows": 23, "evidence_statuses": {"partial_support": 54, "invalid_profile": 6, "no_marker_support": 20}, "review_statuses": {"needs_review": 80}, "marker_statuses": {"mapped": 55, "no_gene_mapping": 3, "documented_nonprotein_or_reagent": 3, "documented_complex_or_family": 10, "source_artifact_needs_review": 4}, "gap_records": 17, "finding_severities": {"error": 23, "warning": 8, "info": 81}}, "sources": [{"subject_id": "SOULCAP:SC000001", "sheet_row": 2, "abbreviation": "NK", "label": "Natural Killer Cell", "parent": "", "specimen": "", "errors": [], "profile_changed": false, "tokens": ["CD11c", "CD123", "CD127", "CD14", "CD15", "CD19", "CD3", "CD33", "CD34", "CD45", "CD56", "CD64", "CD66b", "HLA-DR"], "profile": {"Ready for OLS": "yes", "WB or PBMC": "", "Parent": "", "Abbreviation": "NK", "Full Name": "Natural Killer Cell", "synonym": "", "Type of Match": "Exact", "OLS CL identifier": "", "Required exclusion": "(CD14-|CD33-|CD64-) CD34- CD3- CD19- ", "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD123-", "Required phenotypic markers": "live/ CD45+ CD56+/hi CD127-", "Ideal phenotypic markers": "[CD33-|CD64-]", "Nomenclature Notes": "", "CL Mapping Notes": ""}, "mappings": [{"subject_id": "SOULCAP:SC000001", "legacy_subject_id": "SOULCAP:NK", "abbreviation": "NK", "subject_label": 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{"sense": "negative", "pr": "PR:000001020", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD3E", "tokens": ["CD3E"]}, {"via": "exact_alias", "source_token": "CD3E", "tokens": ["CD3E"]}]}, {"sense": "positive", "pr": "PR:000001869", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD127", "tokens": ["CD127"]}, {"via": "exact_alias", "source_token": "CDW127", "tokens": ["CDW127"]}, {"via": "pro_id", "pr": "PR:000001869", "tokens": ["CD127"]}]}, {"sense": "positive", "pr": "PR:000003455", "asserted": "False", "paths": []}, {"sense": "positive", "pr": "PR:P16871", "asserted": "True", "paths": [{"via": "exact_alias", "source_token": "CDW127", "tokens": ["CDW127"]}]}]}, "registry_row": 11, "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md", "href": "../../candidate_cl_mappings_narrative.md"}]}], "mapping_status": "proposed"}, {"subject_id": "SOULCAP:SC000011", "sheet_row": 12, "abbreviation": "cDC", "label": "Conventional 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"CL:0000576", "Required exclusion": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", "Ideal exclusion": "[CD15hi|CD66b+]- CD3-", "Required phenotypic markers": "live/ CD45+ CD14+/- CD11c+/-", "Ideal phenotypic markers": "(CD64+/-|CD33+)", "Nomenclature Notes": "", "CL Mapping Notes": ""}, "mappings": [{"subject_id": "SOULCAP:SC000017", "legacy_subject_id": "SOULCAP:Mono", "abbreviation": "Mono", "subject_label": "Monocyte", "cl_id": "CL:0000576", "cl_label": "monocyte", "match_type": "Exact", "uncertain": false, "review_status": "needs_review", "evidence_override": "sheet_confirmed", "note": "OAK-verified exact label match (OLS4 was timing out); CL:0000576 has no marker axioms recorded at all. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", "literature_evidence": "", "evidence_source": "reports/candidate_cl_mappings_narrative.md", "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", "evidence": {"status": "invalid_profile", "matched": [], "contradictions": [], "gaps": [], "ideal_conflicts": [], "untested_cl_markers": [], "errors": ["Required exclusion: unexpected ')' in group"], "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", "literature_evidence": "", "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", "review_status": "needs_review", "resolution_mode": "explicit_marker_policy", "profile_sha256": "84c375696035c6d7c9de16751255259e8e834ac9287f201f13ed821a7bfdda5d", "sheet_cl_id": "CL:0000576", "sheet_confirmation": "agrees", "sheet_notes": ""}, "registry_row": 18, "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md", "href": "../../candidate_cl_mappings_narrative.md"}]}], "mapping_status": "proposed"}, {"subject_id": "SOULCAP:SC000018", "sheet_row": 19, "abbreviation": "CMo", "label": "Classical Monocyte", "parent": "Mono", "specimen": "WB and PBMC", "errors": [{"column": "Required exclusion", "expression": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", "error": "unexpected ')' in group"}], "profile_changed": false, "tokens": ["CD14", "CD15", "CD16", "CD3", "CD33", "CD45", "CD64", "CD66b"], "profile": {"Ready for OLS": "yes", "WB or PBMC": "WB and PBMC", "Parent": "Mono", "Abbreviation": "CMo", "Full Name": "Classical Monocyte", "synonym": "", "Type of Match": "Exact", "OLS CL identifier": "CL:0000860", "Required exclusion": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", "Ideal exclusion": "[CD15hi|CD66b+]- CD3- ", "Required phenotypic markers": "live/ CD45+ CD14+ CD16-", "Ideal phenotypic markers": "(CD64+|CD33+)", "Nomenclature Notes": "", "CL Mapping Notes": ""}, "mappings": [{"subject_id": "SOULCAP:SC000018", "legacy_subject_id": "SOULCAP:CMo", "abbreviation": "CMo", "subject_label": "Classical Monocyte", "cl_id": "CL:0000860", "cl_label": "classical monocyte", "match_type": "Exact", "uncertain": false, "review_status": "needs_review", "evidence_override": "sheet_confirmed", "note": "OAK-verified exact label match. CL:0000860 asserts only CCR2 (CD192) and lineage negatives, not the CD14/CD16 axioms that actually define this subset \u2014 already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", "literature_evidence": "", "evidence_source": "reports/candidate_cl_mappings_narrative.md", "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", "evidence": {"status": "invalid_profile", "matched": [], "contradictions": [], "gaps": [], "ideal_conflicts": [], "untested_cl_markers": [], "errors": ["Required exclusion: unexpected ')' in group"], "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", "literature_evidence": "", "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", "review_status": "needs_review", "resolution_mode": "explicit_marker_policy", "profile_sha256": "4c9436c977492d1ccea66ec05a22925897e6235162061f41dbf8e4e09ac940e3", "sheet_cl_id": "CL:0000860", "sheet_confirmation": "agrees", "sheet_notes": ""}, "registry_row": 19, "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md", "href": "../../candidate_cl_mappings_narrative.md"}]}], "mapping_status": "proposed"}, {"subject_id": "SOULCAP:SC000019", "sheet_row": 20, "abbreviation": "NCMo", "label": "Non-classical Monocyte", "parent": "Mono", "specimen": "WB and PBMC", "errors": [{"column": "Required exclusion", "expression": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", "error": "unexpected ')' in group"}], "profile_changed": false, "tokens": ["CD14", "CD15", "CD16", "CD3", "CD33", "CD45", "CD64", "CD66b"], "profile": {"Ready for OLS": "yes", "WB or PBMC": "WB and PBMC", "Parent": "Mono", "Abbreviation": "NCMo", "Full Name": "Non-classical Monocyte", "synonym": "", "Type of Match": "Exact", "OLS CL identifier": "CL:0000875", "Required exclusion": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", "Ideal exclusion": "[CD15hi|CD66b+]- CD3-  ", "Required phenotypic markers": "live/ CD45+ CD14lo/- CD16+ ", "Ideal phenotypic markers": "(CD64+/-|CD33+)", "Nomenclature Notes": "", "CL Mapping Notes": ""}, "mappings": [{"subject_id": "SOULCAP:SC000019", "legacy_subject_id": "SOULCAP:NCMo", "abbreviation": "NCMo", "subject_label": "Non-classical Monocyte", "cl_id": "CL:0000875", "cl_label": "non-classical monocyte", "match_type": "Exact", "uncertain": false, "review_status": "needs_review", "evidence_override": "sheet_confirmed", "note": "OAK-verified exact label match. CL:0000875 asserts only CX3CR1 and lineage negatives, not the CD14/CD16 axioms that actually define this subset \u2014 already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", "literature_evidence": "", "evidence_source": "reports/candidate_cl_mappings_narrative.md", "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", "evidence": {"status": "invalid_profile", "matched": [], "contradictions": [], "gaps": [], "ideal_conflicts": [], "untested_cl_markers": [], "errors": ["Required exclusion: unexpected ')' in group"], "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", "literature_evidence": "", "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", "review_status": "needs_review", "resolution_mode": "explicit_marker_policy", "profile_sha256": "2ccb34f2fc50e1126131986d487fe42c67bdcacc16330874b67750b017cbeab0", "sheet_cl_id": "CL:0000875", "sheet_confirmation": "agrees", "sheet_notes": ""}, "registry_row": 20, "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md", "href": "../../candidate_cl_mappings_narrative.md"}]}], "mapping_status": "proposed"}, {"subject_id": "SOULCAP:SC000020", "sheet_row": 21, "abbreviation": "IntMo", "label": "Intermediate Monocyte", "parent": "Mono", "specimen": "WB and PBMC", "errors": [{"column": "Required exclusion", "expression": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", "error": "unexpected ')' in group"}], "profile_changed": false, "tokens": ["CD14", "CD15", "CD16", "CD3", "CD33", "CD45", "CD64", "CD66b"], "profile": {"Ready for OLS": "yes", "WB or PBMC": "WB and PBMC", "Parent": "Mono", "Abbreviation": "IntMo", "Full Name": "Intermediate Monocyte", "synonym": "", "Type of Match": "Exact", "OLS CL identifier": "CL:0002393", "Required exclusion": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", "Ideal exclusion": "[CD15hi|CD66b+]- CD3- ", "Required phenotypic markers": "live/ CD45+ CD14+ CD16hi ", "Ideal phenotypic markers": "(CD64+|CD33+)", "Nomenclature Notes": "", "CL Mapping Notes": ""}, "mappings": [{"subject_id": "SOULCAP:SC000020", "legacy_subject_id": "SOULCAP:IntMo", "abbreviation": "IntMo", "subject_label": "Intermediate Monocyte", "cl_id": "CL:0002393", "cl_label": "intermediate monocyte", "match_type": "Exact", "uncertain": false, "review_status": "needs_review", "evidence_override": "sheet_confirmed", "note": "OAK-verified exact label match. CL:0002393 asserts only CCR2 (CD192, negative) and lineage negatives, not the CD14/CD16 axioms that actually define this subset \u2014 already tracked by repo issue #12. 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"aa79f8b8798d9b79b35cd87edef7133ca5b824636f3f05d0dfe1b990d87d97c3", "sheet_cl_id": "CL:0002393", "sheet_confirmation": "agrees", "sheet_notes": ""}, "registry_row": 21, "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md", "href": "../../candidate_cl_mappings_narrative.md"}]}], "mapping_status": "proposed"}, {"subject_id": "SOULCAP:SC000021", "sheet_row": 22, "abbreviation": "Neut", "label": "Neutrophil", "parent": "", "specimen": "WB and PBMC", "errors": [], "profile_changed": false, "tokens": ["CD11c", "CD123", "CD14", "CD15", "CD16", "CD19", "CD193", "CD3", "CD33", "CD45", "CD56", "CD64", "CD66b", "HLA-DR"], "profile": {"Ready for OLS": "yes", "WB or PBMC": "WB and PBMC", "Parent": "", "Abbreviation": "Neut", "Full Name": "Neutrophil", "synonym": "", "Type of Match": "Exact", "OLS CL identifier": "", "Required exclusion": "CD3- CD56- CD14lo/- CD123-", "Ideal exclusion": "CD19- [HLA-DR+ CD11chi]-", "Required phenotypic markers": "live/ CD45+ (CD15hi|CD66b+) 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{"column": "Required phenotypic markers", "clause": "(CD15:high OR CD66B:positive)", "assertion": "inferred", "axioms": [{"pr": "PR:000001332", "relation": "RO:0002104", "sense": "positive", "asserted": "False"}]}], "contradictions": [], "gaps": [{"column": "Required exclusion", "clause": "CD3:negative"}, {"column": "Required exclusion", "clause": "(CD14:low OR CD14:negative)"}, {"column": "Required exclusion", "clause": "CD123:negative"}, {"column": "Ideal exclusion", "clause": "(HLA-DR:not:positive OR CD11C:not:high)"}, {"column": "Required phenotypic markers", "clause": "CD45:positive"}, {"column": "Required phenotypic markers", "clause": "CD193:negative"}, {"column": "Required phenotypic markers", "clause": "CD16:high"}, {"column": "Ideal phenotypic markers", "clause": "(CD64:negative OR CD33:positive)"}], "ideal_conflicts": [], "untested_cl_markers": ["CD11", "CD11B", "CD3E", "CD67", "CD87", "CD8A"], "errors": [], "lexical_evidence": "", "literature_evidence": "", "curator_evidence": "", "review_status": "needs_review", "resolution_mode": "explicit_marker_policy", "profile_sha256": "6a7f385e7dd5e22ba96aeedb4aa46fb2e6ab411bc046567fac5d0aeb3ea7f587", "sheet_cl_id": "", "sheet_confirmation": "not_recorded", "sheet_notes": "", "resolution_evidence": [{"sense": "negative", "pr": "PR:000001002", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD19", "tokens": ["CD19"]}, {"via": "pro_id", "pr": "PR:000001002", "tokens": ["CD19"]}]}, {"sense": "negative", "pr": "PR:000001020", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD3E", "tokens": ["CD3E"]}, {"via": "exact_alias", "source_token": "CD3E", "tokens": ["CD3E"]}]}, {"sense": "negative", "pr": "PR:000001024", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD56", "tokens": ["CD56"]}, {"via": "pro_id", "pr": "PR:000001024", "tokens": ["CD56"]}]}, {"sense": "negative", "pr": "PR:000001084", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD8A", "tokens": ["CD8A"]}, {"via": "exact_alias", "source_token": "CD8A", "tokens": ["CD8A"]}]}, {"sense": "positive", "pr": "PR:000001012", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD11", "tokens": ["CD11"]}, {"via": "exact_alias", "source_token": "CD11B", "tokens": ["CD11B"]}]}, {"sense": "positive", "pr": "PR:000001332", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD66B", "tokens": ["CD66B"]}, {"via": "exact_alias", "source_token": "CD67", "tokens": ["CD67"]}, {"via": "pro_id", "pr": "PR:000001332", "tokens": ["CD66B"]}]}, {"sense": "positive", "pr": "PR:000001479", "asserted": "True", "paths": []}, {"sense": "positive", "pr": "PR:000001879", "asserted": "True", "paths": []}, {"sense": "positive", "pr": "PR:000001969", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD87", "tokens": ["CD87"]}]}]}, "registry_row": 22, "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md", "href": "../../candidate_cl_mappings_narrative.md"}]}], "mapping_status": "proposed"}, {"subject_id": "SOULCAP:SC000022", "sheet_row": 23, "abbreviation": "Eos", "label": "Eosinophil", "parent": "", "specimen": "WB", "errors": [], "profile_changed": false, "tokens": ["CD11c", "CD123", "CD14", "CD15", "CD16", "CD19", "CD193", "CD3", "CD33", "CD45", "CD56", "CD64", "CD66b", "HLA-DR"], "profile": {"Ready for OLS": "yes", "WB or PBMC": "WB", "Parent": "", "Abbreviation": "Eos", "Full Name": "Eosinophil", "synonym": "", "Type of Match": "Exact", "OLS CL identifier": "", "Required exclusion": "CD3- CD56- CD14lo/- CD123-", "Ideal exclusion": "CD19- [HLA-DR+ CD11chi]-", "Required phenotypic markers": "live/ CD45+ (CD15hi|CD66b+) CD193+ CD16- ", "Ideal phenotypic markers": "(CD64-|CD33+)", "Nomenclature Notes": "", "CL Mapping Notes": ""}, "mappings": [{"subject_id": "SOULCAP:SC000022", "legacy_subject_id": "SOULCAP:Eosinophil", "abbreviation": "Eosinophil", "subject_label": "Eosinophil", "cl_id": "CL:0000771", "cl_label": "eosinophil", "match_type": "Exact", "uncertain": false, "review_status": "needs_review", "evidence_override": "", "note": "CD193 (CCR3) positive is directly asserted (not inferred) on CL:0000771, precisely matching SOULCAP's defining CD193+ requirement \u2014 one of the stronger marker-confirmed matches in this set.", "lexical_evidence": "", "literature_evidence": "", "evidence_source": "reports/candidate_cl_mappings_narrative.md", "curator_evidence": "", "evidence": {"status": "partial_support", "matched": [{"column": "Required exclusion", "clause": "CD56:negative", "assertion": "inferred", "axioms": [{"pr": "PR:000001024", "relation": "CL:4030046", "sense": "negative", "asserted": "False"}]}, {"column": "Ideal exclusion", "clause": "CD19:negative", "assertion": "inferred", "axioms": [{"pr": "PR:000001002", "relation": "CL:4030046", "sense": "negative", "asserted": "False"}]}, {"column": "Required phenotypic markers", "clause": "(CD15:high OR CD66B:positive)", "assertion": "inferred", "axioms": [{"pr": "PR:000001332", "relation": "RO:0002104", "sense": "positive", "asserted": "False"}]}, {"column": "Required phenotypic markers", "clause": "CD193:positive", "assertion": "direct", "axioms": [{"pr": "PR:000001255", "relation": "RO:0002104", "sense": "positive", "asserted": "True"}]}], "contradictions": [], "gaps": [{"column": "Required exclusion", "clause": "CD3:negative"}, {"column": "Required exclusion", "clause": "(CD14:low OR CD14:negative)"}, {"column": "Required exclusion", "clause": "CD123:negative"}, {"column": "Ideal exclusion", "clause": "(HLA-DR:not:positive OR CD11C:not:high)"}, {"column": "Required phenotypic markers", "clause": "CD45:positive"}, {"column": "Required phenotypic markers", "clause": "CD16:negative"}, {"column": "Ideal phenotypic markers", "clause": "(CD64:negative OR CD33:positive)"}], "ideal_conflicts": [], "untested_cl_markers": ["CD11", "CD11B", "CD191", "CD3E", "CD44", "CD67", "CD69", "CD87", "CD8A", "CD9", "CDW44"], "errors": [], "lexical_evidence": "", "literature_evidence": "", "curator_evidence": "", "review_status": "needs_review", "resolution_mode": "explicit_marker_policy", "profile_sha256": "874205816800964db5c591f96652bdac9d28acef6907b20275b346c4e2cc3524", "sheet_cl_id": "", "sheet_confirmation": "not_recorded", "sheet_notes": "", "resolution_evidence": [{"sense": "negative", "pr": "PR:000001002", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD19", "tokens": ["CD19"]}, {"via": "pro_id", "pr": "PR:000001002", "tokens": ["CD19"]}]}, {"sense": "negative", "pr": "PR:000001020", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD3E", "tokens": ["CD3E"]}, {"via": "exact_alias", "source_token": "CD3E", "tokens": ["CD3E"]}]}, {"sense": "negative", "pr": "PR:000001024", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD56", "tokens": ["CD56"]}, {"via": "pro_id", "pr": "PR:000001024", "tokens": ["CD56"]}]}, {"sense": "negative", "pr": "PR:000001084", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD8A", "tokens": ["CD8A"]}, {"via": "exact_alias", "source_token": "CD8A", "tokens": ["CD8A"]}]}, {"sense": "positive", "pr": "PR:000001012", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD11", "tokens": ["CD11"]}, {"via": "exact_alias", "source_token": "CD11B", "tokens": ["CD11B"]}]}, {"sense": "positive", "pr": "PR:000001254", "asserted": "True", "paths": [{"via": "exact_alias", "source_token": "CD191", "tokens": ["CD191"]}]}, {"sense": "positive", "pr": "PR:000001255", "asserted": "True", "paths": [{"via": "exact_alias", "source_token": "CD193", "tokens": ["CD193"]}, {"via": "pro_id", "pr": "PR:000001255", "tokens": ["CD193"]}]}, {"sense": "positive", "pr": "PR:000001307", "asserted": "True", "paths": [{"via": "exact_alias", "source_token": "CD44", "tokens": ["CD44"]}, {"via": "exact_alias", "source_token": "CDW44", "tokens": ["CDW44"]}]}, {"sense": "positive", "pr": "PR:000001332", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD66B", "tokens": ["CD66B"]}, {"via": "exact_alias", "source_token": "CD67", "tokens": ["CD67"]}, {"via": "pro_id", "pr": "PR:000001332", "tokens": ["CD66B"]}]}, {"sense": "positive", "pr": "PR:000001343", "asserted": "True", "paths": [{"via": "exact_alias", "source_token": "CD69", "tokens": ["CD69"]}]}, {"sense": "positive", "pr": "PR:000001969", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD87", "tokens": ["CD87"]}]}, {"sense": "positive", "pr": "PR:000005178", "asserted": "True", "paths": [{"via": "exact_alias", "source_token": "CD9", "tokens": ["CD9"]}]}]}, "registry_row": 23, "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md", "href": "../../candidate_cl_mappings_narrative.md"}]}], "mapping_status": "proposed"}, {"subject_id": "SOULCAP:SC000023", "sheet_row": 24, "abbreviation": "B cell", "label": "B cell", "parent": "", "specimen": "", "errors": [], "profile_changed": false, "tokens": ["CD11c", "CD123", "CD127", "CD14", "CD15", "CD16", "CD19", "CD20", "CD3", "CD33", "CD45", "CD56", "CD64", "CD66b", "HLA-DR"], "profile": {"Ready for OLS": "yes", "WB or PBMC": "", "Parent": "", "Abbreviation": "B cell", "Full Name": "B cell", "synonym": "", "Type of Match": "Exact", "OLS CL identifier": "", "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-", "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-", "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+)", "Ideal phenotypic markers": "CD20+", "Nomenclature Notes": "", "CL Mapping Notes": ""}, "mappings": [{"subject_id": "SOULCAP:SC000023", "legacy_subject_id": "SOULCAP:B_cell", "abbreviation": "B cell", "subject_label": "B cell", "cl_id": "CL:0000236", "cl_label": "B cell", "match_type": "Exact", "uncertain": false, "review_status": "needs_review", "evidence_override": "no_marker_axiom", "note": "OLS4 REST search returned zero hits for this exact query; found instead via OAK. 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marker scoring found nothing useful (mouse B220-nomenclature terms scored highest instead).", "lexical_evidence": "", "literature_evidence": "", "evidence_source": "reports/candidate_cl_mappings_narrative.md", "curator_evidence": "", "evidence": {"status": "no_marker_support", "matched": [], "contradictions": [], "gaps": [{"column": "Required exclusion", "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"}, {"column": "Required exclusion", "clause": "CD3:negative"}, {"column": "Required exclusion", "clause": "CD56:negative"}, {"column": "Ideal exclusion", "clause": "CD127:negative"}, {"column": "Ideal exclusion", "clause": "CD16:negative"}, {"column": "Ideal exclusion", "clause": "(CD15:negative OR CD66B:negative)"}, {"column": "Ideal exclusion", "clause": "(HLA-DR:not:positive OR CD11C:not:high)"}, {"column": "Ideal exclusion", "clause": "CD123:negative"}, {"column": "Required phenotypic markers", "clause": "CD45:positive"}, {"column": "Required phenotypic markers", "clause": "CD19:positive"}, {"column": "Required phenotypic markers", "clause": "(CD27:positive OR CD27:high)"}, {"column": "Required phenotypic markers", "clause": "CD38:high"}, {"column": "Ideal phenotypic markers", "clause": "(CD20:low OR CD20:negative)"}], "ideal_conflicts": [], "untested_cl_markers": [], "errors": [], "lexical_evidence": "", "literature_evidence": "", "curator_evidence": "", "review_status": "needs_review", "resolution_mode": "explicit_marker_policy", "profile_sha256": "a80b760b7494b5ccacbfeb5822368766f2b27665ee08fea9e8e1f9c303a76c79", "sheet_cl_id": "", "sheet_confirmation": "not_recorded", "sheet_notes": "", "resolution_evidence": []}, "registry_row": 25, "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md", "href": "../../candidate_cl_mappings_narrative.md"}]}], "mapping_status": "proposed"}, {"subject_id": "SOULCAP:SC000025", "sheet_row": 26, "abbreviation": "PB", "label": "Plasmablast", "parent": "ASC", "specimen": "", "errors": [], "profile_changed": false, "tokens": ["CD11c", "CD123", "CD127", "CD138", "CD14", "CD15", "CD16", "CD19", "CD20", "CD27", "CD3", "CD33", "CD38", "CD45", "CD56", "CD64", "CD66b", "HLA-DR"], "profile": {"Ready for OLS": "yes", "WB or PBMC": "", "Parent": "ASC", "Abbreviation": "PB", "Full Name": "Plasmablast", "synonym": "", "Type of Match": "Surface Only (SO)", "OLS CL identifier": "", "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-", "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-", "Required phenotypic markers": "live/ CD45+ CD19+ CD27+/hi CD38hi CD138-", "Ideal phenotypic markers": "CD20+/-", "Nomenclature Notes": "", "CL Mapping Notes": ""}, "mappings": [{"subject_id": "SOULCAP:SC000025", "legacy_subject_id": "SOULCAP:PB", "abbreviation": "PB", "subject_label": "Plasmablast", "cl_id": "CL:0000980", "cl_label": "plasmablast", "match_type": "Exact", "uncertain": false, "review_status": "needs_review", "evidence_override": "no_marker_axiom", "note": "Lexical match; 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"CD16", "CD19", "CD20", "CD33", "CD64", "CD66b", "HLA-DR", "TCR", "V", "delta1"], "profile": {"Ready for OLS": "yes", "WB or PBMC": "", "Parent": "TCRgd", "Abbreviation": "Vd2", "Full Name": "", "synonym": "", "Type of Match": "", "OLS CL identifier": "", "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-", "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-", "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 2+ TCR V gamma 9- TCR Vd1-", "Ideal phenotypic markers": "TCR V delta1-", "Nomenclature Notes": "", "CL Mapping Notes": ""}, "mappings": [], "mapping_status": "no_proposal"}, {"subject_id": "SOULCAP:SC000124", "sheet_row": 125, "abbreviation": "Vd3", "label": "Vd3", "parent": "TCRgd", "specimen": "", "errors": [{"column": "Required phenotypic markers", "expression": "CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 1- TCR V delta 2- TCR V gamma 9- ", "error": "invalid marker token '1-'"}, {"column": "Ideal phenotypic markers", "expression": "TCR V 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"error": "invalid marker token '1+'"}, {"column": "Ideal phenotypic markers", "expression": " TCR V delta 2- TCR V gamma 9+/-", "error": "invalid marker token '2-'"}], "profile_changed": false, "tokens": ["CD11c", "CD123", "CD14", "CD15", "CD16", "CD19", "CD20", "CD33", "CD64", "CD66b", "HLA-DR"], "profile": {"Ready for OLS": "yes", "WB or PBMC": "", "Parent": "TCRgd", "Abbreviation": "Vd1", "Full Name": "", "synonym": "", "Type of Match": "", "OLS CL identifier": "", "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-", "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-", "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 1+ TCR V delta 2- TCR V gamma 9+/-", "Ideal phenotypic markers": " TCR V delta 2- TCR V gamma 9+/-", "Nomenclature Notes": "", "CL Mapping Notes": ""}, "mappings": [], "mapping_status": "no_proposal"}, {"subject_id": "SOULCAP:SC000127", "sheet_row": 128, "abbreviation": "Vg9", "label": "Vg9", "parent": "TCRgd", "specimen": "", "errors": [{"column": "Required phenotypic markers", "expression": "CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 1- TCR V delta 2- TCR V gamma 9+ ", "error": "invalid marker token '1-'"}, {"column": "Ideal phenotypic markers", "expression": " TCR V delta 1- TCR V delta 2- ", "error": "invalid marker token '1-'"}], "profile_changed": false, "tokens": ["CD11c", "CD123", "CD14", "CD15", "CD16", "CD19", "CD20", "CD33", "CD64", "CD66b", "HLA-DR"], "profile": {"Ready for OLS": "no", "WB or PBMC": "", "Parent": "TCRgd", "Abbreviation": "Vg9 ", "Full Name": "", "synonym": "", "Type of Match": "", "OLS CL identifier": "", "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-", "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-", "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 1- TCR V delta 2- TCR V gamma 9+ ", "Ideal phenotypic markers": " TCR V delta 1- TCR V delta 2- ", "Nomenclature Notes": "", "CL Mapping Notes": ""}, "mappings": [], "mapping_status": "no_proposal"}], "mappings": [{"subject_id": "SOULCAP:SC000001", "legacy_subject_id": "SOULCAP:NK", "abbreviation": "NK", "subject_label": "Natural Killer Cell", "cl_id": "CL:0000623", "cl_label": "natural killer cell", "match_type": "Exact", "uncertain": false, "review_status": "needs_review", "evidence_override": "no_marker_axiom", "note": "CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the defining positive CD56 marker is absent \u2014 a documented CL gap (cl_term_issues.md), not confirmed here.", "lexical_evidence": "", "literature_evidence": "", "evidence_source": "reports/candidate_cl_mappings_narrative.md", "curator_evidence": "", "evidence": {"status": "partial_support", "matched": [{"column": "Required exclusion", "clause": "(CD14:negative OR CD33:negative OR CD64:negative)", "assertion": "direct", "axioms": [{"pr": "PR:000001889", "relation": "CL:4030046", "sense": "negative", "asserted": "True"}]}, {"column": "Required exclusion", "clause": 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"False", "paths": [{"via": "exact_alias", "source_token": "CD3E", "tokens": ["CD3E"]}, {"via": "exact_alias", "source_token": "CD3E", "tokens": ["CD3E"]}]}, {"sense": "negative", "pr": "PR:000001024", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD56", "tokens": ["CD56"]}, {"via": "pro_id", "pr": "PR:000001024", "tokens": ["CD56"]}]}, {"sense": "negative", "pr": "PR:000001084", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD8A", "tokens": ["CD8A"]}, {"via": "exact_alias", "source_token": "CD8A", "tokens": ["CD8A"]}]}, {"sense": "positive", "pr": "PR:000001012", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD11", "tokens": ["CD11"]}, {"via": "exact_alias", "source_token": "CD11B", "tokens": ["CD11B"]}]}, {"sense": "positive", "pr": "PR:000001332", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD66B", "tokens": ["CD66B"]}, {"via": "exact_alias", "source_token": "CD67", "tokens": ["CD67"]}, {"via": "pro_id", "pr": "PR:000001332", "tokens": ["CD66B"]}]}, {"sense": "positive", "pr": "PR:000001344", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD203C", "tokens": ["CD203C"]}]}, {"sense": "positive", "pr": "PR:000001950", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD154", "tokens": ["CD154"]}, {"via": "exact_alias", "source_token": "CD40", "tokens": ["CD40"]}, {"via": "exact_alias", "source_token": "CD40LG", "tokens": ["CD40LG"]}]}, {"sense": "positive", "pr": "PR:000001969", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD87", "tokens": ["CD87"]}]}]}, "registry_row": 17, "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md", "href": "../../candidate_cl_mappings_narrative.md"}]}, {"subject_id": "SOULCAP:SC000017", "legacy_subject_id": "SOULCAP:Mono", "abbreviation": "Mono", "subject_label": "Monocyte", "cl_id": "CL:0000576", "cl_label": "monocyte", "match_type": "Exact", "uncertain": false, "review_status": "needs_review", "evidence_override": "sheet_confirmed", "note": "OAK-verified exact label match (OLS4 was timing out); CL:0000576 has no marker axioms recorded at all. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", "literature_evidence": "", "evidence_source": "reports/candidate_cl_mappings_narrative.md", "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", "evidence": {"status": "invalid_profile", "matched": [], "contradictions": [], "gaps": [], "ideal_conflicts": [], "untested_cl_markers": [], "errors": ["Required exclusion: unexpected ')' in group"], "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", "literature_evidence": "", "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", "review_status": "needs_review", "resolution_mode": "explicit_marker_policy", "profile_sha256": "84c375696035c6d7c9de16751255259e8e834ac9287f201f13ed821a7bfdda5d", "sheet_cl_id": "CL:0000576", "sheet_confirmation": "agrees", "sheet_notes": ""}, "registry_row": 18, "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md", "href": "../../candidate_cl_mappings_narrative.md"}]}, {"subject_id": "SOULCAP:SC000018", "legacy_subject_id": "SOULCAP:CMo", "abbreviation": "CMo", "subject_label": "Classical Monocyte", "cl_id": "CL:0000860", "cl_label": "classical monocyte", "match_type": "Exact", "uncertain": false, "review_status": "needs_review", "evidence_override": "sheet_confirmed", "note": "OAK-verified exact label match. CL:0000860 asserts only CCR2 (CD192) and lineage negatives, not the CD14/CD16 axioms that actually define this subset \u2014 already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", "literature_evidence": "", "evidence_source": "reports/candidate_cl_mappings_narrative.md", "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", "evidence": {"status": "invalid_profile", "matched": [], "contradictions": [], "gaps": [], "ideal_conflicts": [], "untested_cl_markers": [], "errors": ["Required exclusion: unexpected ')' in group"], "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", "literature_evidence": "", "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", "review_status": "needs_review", "resolution_mode": "explicit_marker_policy", "profile_sha256": "4c9436c977492d1ccea66ec05a22925897e6235162061f41dbf8e4e09ac940e3", "sheet_cl_id": "CL:0000860", "sheet_confirmation": "agrees", "sheet_notes": ""}, "registry_row": 19, "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md", "href": "../../candidate_cl_mappings_narrative.md"}]}, {"subject_id": "SOULCAP:SC000019", "legacy_subject_id": "SOULCAP:NCMo", "abbreviation": "NCMo", "subject_label": "Non-classical Monocyte", "cl_id": "CL:0000875", "cl_label": "non-classical monocyte", "match_type": "Exact", "uncertain": false, "review_status": "needs_review", "evidence_override": "sheet_confirmed", "note": "OAK-verified exact label match. CL:0000875 asserts only CX3CR1 and lineage negatives, not the CD14/CD16 axioms that actually define this subset \u2014 already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", "literature_evidence": "", "evidence_source": "reports/candidate_cl_mappings_narrative.md", "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", "evidence": {"status": "invalid_profile", "matched": [], "contradictions": [], "gaps": [], "ideal_conflicts": [], "untested_cl_markers": [], "errors": ["Required exclusion: unexpected ')' in group"], "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", "literature_evidence": "", "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", "review_status": "needs_review", "resolution_mode": "explicit_marker_policy", "profile_sha256": "2ccb34f2fc50e1126131986d487fe42c67bdcacc16330874b67750b017cbeab0", "sheet_cl_id": "CL:0000875", "sheet_confirmation": "agrees", "sheet_notes": ""}, "registry_row": 20, "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md", "href": "../../candidate_cl_mappings_narrative.md"}]}, {"subject_id": "SOULCAP:SC000020", "legacy_subject_id": "SOULCAP:IntMo", "abbreviation": "IntMo", "subject_label": "Intermediate Monocyte", "cl_id": "CL:0002393", "cl_label": "intermediate monocyte", "match_type": "Exact", "uncertain": false, "review_status": "needs_review", "evidence_override": "sheet_confirmed", "note": "OAK-verified exact label match. CL:0002393 asserts only CCR2 (CD192, negative) and lineage negatives, not the CD14/CD16 axioms that actually define this subset \u2014 already tracked by repo issue #12. 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"aa79f8b8798d9b79b35cd87edef7133ca5b824636f3f05d0dfe1b990d87d97c3", "sheet_cl_id": "CL:0002393", "sheet_confirmation": "agrees", "sheet_notes": ""}, "registry_row": 21, "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md", "href": "../../candidate_cl_mappings_narrative.md"}]}, {"subject_id": "SOULCAP:SC000021", "legacy_subject_id": "SOULCAP:Neutrophil", "abbreviation": "Neutrophil", "subject_label": "Neutrophil", "cl_id": "CL:0000775", "cl_label": "neutrophil", "match_type": "Exact", "uncertain": false, "review_status": "needs_review", "evidence_override": "", "note": "", "lexical_evidence": "", "literature_evidence": "", "evidence_source": "reports/candidate_cl_mappings_narrative.md", "curator_evidence": "", "evidence": {"status": "partial_support", "matched": [{"column": "Required exclusion", "clause": "CD56:negative", "assertion": "inferred", "axioms": [{"pr": "PR:000001024", "relation": "CL:4030046", "sense": "negative", "asserted": "False"}]}, {"column": "Ideal exclusion", "clause": "CD19:negative", "assertion": "inferred", "axioms": [{"pr": "PR:000001002", "relation": "CL:4030046", "sense": "negative", "asserted": "False"}]}, {"column": "Required phenotypic markers", "clause": "(CD15:high OR CD66B:positive)", "assertion": "inferred", "axioms": [{"pr": "PR:000001332", "relation": "RO:0002104", "sense": "positive", "asserted": "False"}]}], "contradictions": [], "gaps": [{"column": "Required exclusion", "clause": "CD3:negative"}, {"column": "Required exclusion", "clause": "(CD14:low OR CD14:negative)"}, {"column": "Required exclusion", "clause": "CD123:negative"}, {"column": "Ideal exclusion", "clause": "(HLA-DR:not:positive OR CD11C:not:high)"}, {"column": "Required phenotypic markers", "clause": "CD45:positive"}, {"column": "Required phenotypic markers", "clause": "CD193:negative"}, {"column": "Required phenotypic markers", "clause": "CD16:high"}, {"column": "Ideal phenotypic markers", "clause": "(CD64:negative OR CD33:positive)"}], "ideal_conflicts": [], "untested_cl_markers": ["CD11", "CD11B", "CD3E", "CD67", "CD87", "CD8A"], "errors": [], "lexical_evidence": "", "literature_evidence": "", "curator_evidence": "", "review_status": "needs_review", "resolution_mode": "explicit_marker_policy", "profile_sha256": "6a7f385e7dd5e22ba96aeedb4aa46fb2e6ab411bc046567fac5d0aeb3ea7f587", "sheet_cl_id": "", "sheet_confirmation": "not_recorded", "sheet_notes": "", "resolution_evidence": [{"sense": "negative", "pr": "PR:000001002", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD19", "tokens": ["CD19"]}, {"via": "pro_id", "pr": "PR:000001002", "tokens": ["CD19"]}]}, {"sense": "negative", "pr": "PR:000001020", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD3E", "tokens": ["CD3E"]}, {"via": "exact_alias", "source_token": "CD3E", "tokens": ["CD3E"]}]}, {"sense": "negative", "pr": "PR:000001024", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD56", "tokens": ["CD56"]}, {"via": "pro_id", "pr": "PR:000001024", "tokens": ["CD56"]}]}, {"sense": "negative", "pr": "PR:000001084", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD8A", "tokens": ["CD8A"]}, {"via": "exact_alias", "source_token": "CD8A", "tokens": ["CD8A"]}]}, {"sense": "positive", "pr": "PR:000001012", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD11", "tokens": ["CD11"]}, {"via": "exact_alias", "source_token": "CD11B", "tokens": ["CD11B"]}]}, {"sense": "positive", "pr": "PR:000001332", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD66B", "tokens": ["CD66B"]}, {"via": "exact_alias", "source_token": "CD67", "tokens": ["CD67"]}, {"via": "pro_id", "pr": "PR:000001332", "tokens": ["CD66B"]}]}, {"sense": "positive", "pr": "PR:000001479", "asserted": "True", "paths": []}, {"sense": "positive", "pr": "PR:000001879", "asserted": "True", "paths": []}, {"sense": "positive", "pr": "PR:000001969", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD87", "tokens": ["CD87"]}]}]}, "registry_row": 22, "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md", "href": "../../candidate_cl_mappings_narrative.md"}]}, {"subject_id": "SOULCAP:SC000022", "legacy_subject_id": "SOULCAP:Eosinophil", "abbreviation": "Eosinophil", "subject_label": "Eosinophil", "cl_id": "CL:0000771", "cl_label": "eosinophil", "match_type": "Exact", "uncertain": false, "review_status": "needs_review", "evidence_override": "", "note": "CD193 (CCR3) positive is directly asserted (not inferred) on CL:0000771, precisely matching SOULCAP's defining CD193+ requirement \u2014 one of the stronger marker-confirmed matches in this set.", "lexical_evidence": "", "literature_evidence": "", "evidence_source": "reports/candidate_cl_mappings_narrative.md", "curator_evidence": "", "evidence": {"status": "partial_support", "matched": [{"column": "Required exclusion", "clause": "CD56:negative", "assertion": 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"evidence_override": "no_marker_axiom", "note": "OAK-verified; marker scoring returned unrelated myeloid terms.", "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", "literature_evidence": "", "evidence_source": "reports/candidate_cl_mappings_narrative.md", "curator_evidence": "", "evidence": {"status": "no_marker_support", "matched": [], "contradictions": [], "gaps": [{"column": "Required exclusion", "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"}, {"column": "Required exclusion", "clause": "(CD19:negative OR CD20:negative)"}, {"column": "Required exclusion", "clause": "CD123:negative"}, {"column": "Ideal exclusion", "clause": "(HLA-DR:not:positive OR CD11C:not:high)"}, {"column": "Ideal exclusion", "clause": "(CD15:negative OR CD66B:negative)"}, {"column": "Ideal exclusion", "clause": "CD16:negative"}, {"column": "Required phenotypic markers", "clause": "CD45:positive"}, {"column": "Required phenotypic markers", "clause": 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match is lexical/name-based only, not CL-marker-supported.", "lexical_evidence": "", "literature_evidence": "", "evidence_source": "reports/candidate_cl_mappings_narrative.md", "curator_evidence": "", "evidence": {"status": "partial_support", "matched": [{"column": "Required exclusion", "clause": "CD19:negative", "assertion": "direct", "axioms": [{"pr": "PR:000001002", "relation": "CL:4030046", "sense": "negative", "asserted": "True"}]}], "contradictions": [], "gaps": [{"column": "Required exclusion", "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"}, {"column": "Required exclusion", "clause": "CD34:negative"}, {"column": "Required exclusion", "clause": "CD3:negative"}, {"column": "Ideal exclusion", "clause": "(HLA-DR:not:positive OR CD11C:not:high)"}, {"column": "Ideal exclusion", "clause": "(CD15:negative OR CD66B:negative)"}, {"column": "Ideal exclusion", "clause": "CD123:negative"}, {"column": "Required phenotypic markers", "clause": "CD45:positive"}, {"column": "Required phenotypic markers", "clause": "CD127:positive"}], "ideal_conflicts": [], "untested_cl_markers": ["CD3E"], "errors": [], "lexical_evidence": "", "literature_evidence": "", "curator_evidence": "", "review_status": "needs_review", "resolution_mode": "explicit_marker_policy", "profile_sha256": "2382ffa8b1693854f19ee2104691b9f0a0c23f6e976b56d1c507692da08d12fc", "sheet_cl_id": "", "sheet_confirmation": "not_recorded", "sheet_notes": "", "resolution_evidence": [{"sense": "negative", "pr": "PR:000001002", "asserted": "True", "paths": [{"via": "exact_alias", "source_token": "CD19", "tokens": ["CD19"]}, {"via": "pro_id", "pr": "PR:000001002", "tokens": ["CD19"]}]}, {"sense": "negative", "pr": "PR:000001020", "asserted": "True", "paths": [{"via": "exact_alias", "source_token": "CD3E", "tokens": ["CD3E"]}, {"via": "exact_alias", "source_token": "CD3E", "tokens": ["CD3E"]}]}]}, "registry_row": 8, "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md", "href": "../../candidate_cl_mappings_narrative.md"}]}]}, {"cl_id": "CL:0001067", "label": "group 1 innate lymphoid cell", "subject_ids": ["SOULCAP:SC000008"], "relations": ["Exact"], "mappings": [{"subject_id": "SOULCAP:SC000008", "legacy_subject_id": "SOULCAP:ILC1", "abbreviation": "ILC1", "subject_label": "Innate Lymphoid Cell 1", "cl_id": "CL:0001067", "cl_label": "group 1 innate lymphoid cell", "match_type": "Exact", "uncertain": false, "review_status": "needs_review", "evidence_override": "no_marker_axiom", "note": "Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only. No human-specific CL term exists for group 1 (unlike group 2/3); filed as CL gap, repo issue #14.", "lexical_evidence": "", "literature_evidence": "", "evidence_source": "reports/candidate_cl_mappings_narrative.md", "curator_evidence": "", "evidence": {"status": "partial_support", "matched": [{"column": "Required exclusion", "clause": "CD19:negative", "assertion": "inferred", "axioms": [{"pr": "PR:000001002", "relation": "CL:4030046", "sense": "negative", "asserted": "False"}]}], "contradictions": [], "gaps": [{"column": "Required exclusion", "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"}, {"column": "Required exclusion", "clause": "CD34:negative"}, {"column": "Required exclusion", "clause": "CD3:negative"}, {"column": "Ideal exclusion", "clause": "(HLA-DR:not:positive OR CD11C:not:high)"}, {"column": "Ideal exclusion", "clause": "(CD15:negative OR CD66B:negative)"}, {"column": "Ideal exclusion", "clause": "CD123:negative"}, {"column": "Required phenotypic markers", "clause": "CD45:positive"}, {"column": "Required phenotypic markers", "clause": "CD127:positive"}, {"column": "Required phenotypic markers", "clause": "CD56:negative"}, {"column": "Required phenotypic markers", "clause": "CD117:negative"}, {"column": "Required phenotypic markers", "clause": "CD294:negative"}], "ideal_conflicts": [], "untested_cl_markers": ["CD3E"], "errors": [], "lexical_evidence": "", "literature_evidence": "", "curator_evidence": "", "review_status": "needs_review", "resolution_mode": "explicit_marker_policy", "profile_sha256": "0a749f50550a7edd93adce27f94a7302c0dbc59107a2eaae2cf44d03133a6568", "sheet_cl_id": "", "sheet_confirmation": "not_recorded", "sheet_notes": "", "resolution_evidence": [{"sense": "negative", "pr": "PR:000001002", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD19", "tokens": ["CD19"]}, {"via": "pro_id", "pr": "PR:000001002", "tokens": ["CD19"]}]}, {"sense": "negative", "pr": "PR:000001020", "asserted": "False", "paths": [{"via": "exact_alias", "source_token": "CD3E", "tokens": ["CD3E"]}, {"via": "exact_alias", "source_token": "CD3E", "tokens": ["CD3E"]}]}]}, "registry_row": 9, "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md", "href": "../../candidate_cl_mappings_narrative.md"}]}]}, {"cl_id": "CL:0001074", "label": "CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human", "subject_ids": ["SOULCAP:SC000006"], "relations": ["Broad"], "mappings": [{"subject_id": "SOULCAP:SC000006", "legacy_subject_id": "SOULCAP:ILCp", "abbreviation": "ILCp", "subject_label": "Innate Lymphoid Cell Progenitor", "cl_id": "CL:0001074", "cl_label": "CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human", "match_type": "Broad", "uncertain": true, "review_status": "needs_review", "evidence_override": "", "note": "SOULCAP profile does not test CD34; 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No single PR ID or UniProt accession covers all subclasses."}], "pro_ids": [], "gene_symbols": [], "ncbi_gene_ids": [], "identifier_status": "no_pro_mapping", "status": "documented_complex_or_family", "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", "resolution_policy": {"marker_token": "IGG", "representation": "protein_family", "protein_resolution": "withhold", "rationale": "Registry notes document a non-single-protein or pan-marker representation.", "source_ref": "marker_mappings/marker_protein_gene.csv#IgG", "registry_sha256": "c51e1dd6ae671fd9db387be6d0a26fdce6645e0f6a00d14891c0922708a941e7"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "IgM", "affected_subjects": ["SOULCAP:SC000038", "SOULCAP:SC000039", "SOULCAP:SC000040", "SOULCAP:SC000041", "SOULCAP:SC000042", "SOULCAP:SC000043", "SOULCAP:SC000044"], "records": [{"marker_token": "IgM", "marker_synonyms": "", "source_columns": "Required phenotypic markers", "pro_id": "", "pro_label": "", "uniprot_id": "", "uniprot_label": "", "gene_symbol": "", "hgnc_id": "", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "low", "evidence": "", "notes": "Immunoglobulin heavy-chain class M; encoded by IGHM. No single PR ID or UniProt accession."}], "pro_ids": [], "gene_symbols": [], "ncbi_gene_ids": [], "identifier_status": "no_pro_mapping", "status": "documented_complex_or_family", "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", "resolution_policy": {"marker_token": "IGM", "representation": "protein_family", "protein_resolution": "withhold", "rationale": "Registry notes document a non-single-protein or pan-marker representation.", "source_ref": "marker_mappings/marker_protein_gene.csv#IgM", "registry_sha256": "fc17667826dd44b6b08bd4cb257f3d4fa23fdbf477c3da79386cb427b0d2f88d"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "MR1", "affected_subjects": [], "records": [{"marker_token": "MR1", "marker_synonyms": "", "source_columns": "Required phenotypic markers", "pro_id": "PR:Q95460", "pro_label": "major histocompatibility complex class I-related protein 1 (human)", "uniprot_id": "Q95460", "uniprot_label": "major histocompatibility complex, class I-related", "gene_symbol": "MR1", "hgnc_id": "HGNC:4975", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "high", "evidence": "https://rest.genenames.org/fetch/symbol/MR1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_Q95460", "notes": "MHC-related protein 1; also used as 'MR1 tetramer' reagent for MAIT cell detection"}], "pro_ids": ["PR:Q95460"], "gene_symbols": ["MR1"], "ncbi_gene_ids": [], "identifier_status": "mapped", "status": "mapped", "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", "resolution_policy": {"marker_token": "MR1", "representation": "unresolved", "protein_resolution": "withhold", "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.", "source_ref": "marker_mappings/marker_protein_gene.csv#MR1", "registry_sha256": "96c5bf22b0be1d144cf60f175968b19c1485c64c4866d4a109f636a9c9af703d"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "TCR", "affected_subjects": ["SOULCAP:SC000122", "SOULCAP:SC000123"], "records": [{"marker_token": "TCR", "marker_synonyms": "", "source_columns": "Ideal phenotypic markers|Required phenotypic markers", "pro_id": "", "pro_label": "", "uniprot_id": "", "uniprot_label": "", "gene_symbol": "", "hgnc_id": "", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "medium", "evidence": "", "notes": "pan-TCR marker; not specific to a single gene"}], "pro_ids": [], "gene_symbols": [], "ncbi_gene_ids": [], "identifier_status": "no_pro_mapping", "status": "documented_complex_or_family", "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", "resolution_policy": {"marker_token": "TCR", "representation": "protein_family", "protein_resolution": "withhold", "rationale": "Registry notes document a non-single-protein or pan-marker representation.", "source_ref": "marker_mappings/marker_protein_gene.csv#TCR", "registry_sha256": "9a617aa9a766194134020d7afa5feca696fc92cb187377eb72b2bb326d40cae7"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "TCRVa24", "affected_subjects": [], "records": [{"marker_token": "TCRVa24", "marker_synonyms": "", "source_columns": "Required phenotypic markers", "pro_id": "PR:A0A0B4J240", "pro_label": "T cell receptor alpha variable 10 (human)", "uniprot_id": "A0A0B4J240", "uniprot_label": "T cell receptor alpha variable 10 (human)", "gene_symbol": "TRAV10", "hgnc_id": "HGNC:12103", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "medium", "evidence": "https://rest.genenames.org/fetch/symbol/TRAV10; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J240", "notes": "IMGT nomenclature: TRAV10"}], "pro_ids": ["PR:A0A0B4J240"], "gene_symbols": ["TRAV10"], "ncbi_gene_ids": [], "identifier_status": "mapped", "status": "mapped", "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", "resolution_policy": {"marker_token": "TCRVA24", "representation": "single_protein", "protein_resolution": "allow", "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVa24", "registry_sha256": "f81c80eeaa4d2de919813822e062fe2e4210b8a025bd76ebbad546bdd0936315"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "TCRVa24-Ja18", "affected_subjects": [], "records": [{"marker_token": "TCRVa24-Ja18", "marker_synonyms": "", "source_columns": "Required phenotypic markers", "pro_id": "PR:A0A0B4J240", "pro_label": "T cell receptor alpha variable 10 (human)", "uniprot_id": "A0A0B4J240", "uniprot_label": "T cell receptor alpha variable 10 (human)", "gene_symbol": "TRAV10", "hgnc_id": "HGNC:12103", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "medium", "evidence": "https://rest.genenames.org/fetch/symbol/TRAV10; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J240", "notes": "Invariant iNKT TCR chain; two-gene marker TRAV10+TRAJ18; gene_symbol populated with TRAV10 as primary TRAV gene"}], "pro_ids": ["PR:A0A0B4J240"], "gene_symbols": ["TRAV10"], "ncbi_gene_ids": [], "identifier_status": "mapped", "status": "documented_complex_or_family", "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", "resolution_policy": {"marker_token": "TCRVA24-JA18", "representation": "complex", "protein_resolution": "withhold", "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.", "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVa24-Ja18", "registry_sha256": "aad1afeeb19ea59d1c85741576656d0bf629f1500ac86d389d008e5adc327020"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "TCRVa7.2", "affected_subjects": [], "records": [{"marker_token": "TCRVa7.2", "marker_synonyms": "", "source_columns": "Required phenotypic markers", "pro_id": "PR:A0A0B4J238", "pro_label": "T cell receptor alpha variable 1-2 (human)", "uniprot_id": "A0A0B4J238", "uniprot_label": "T cell receptor alpha variable 1-2 (human)", "gene_symbol": "TRAV1-2", "hgnc_id": "HGNC:12102", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "medium", "evidence": "https://rest.genenames.org/fetch/symbol/TRAV1-2; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J238", "notes": "IMGT nomenclature: TRAV1-2"}], "pro_ids": ["PR:A0A0B4J238"], "gene_symbols": ["TRAV1-2"], "ncbi_gene_ids": [], "identifier_status": "mapped", "status": "mapped", "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", "resolution_policy": {"marker_token": "TCRVA7.2", "representation": "single_protein", "protein_resolution": "allow", "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVa7.2", "registry_sha256": "1917c912d25db47ddf31fdee753f0093f18dfb1fcf080f5a2dcc9a53cdd490a5"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "TCRVb11", "affected_subjects": [], "records": [{"marker_token": "TCRVb11", "marker_synonyms": "", "source_columns": "Required phenotypic markers", "pro_id": "PR:A0A075B6N4", "pro_label": "T cell receptor beta variable 25-1 (human)", "uniprot_id": "A0A075B6N4", "uniprot_label": "T cell receptor beta variable 25-1 (human)", "gene_symbol": "TRBV25-1", "hgnc_id": "HGNC:12205", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "medium", "evidence": "https://rest.genenames.org/fetch/symbol/TRBV25-1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A075B6N4", "notes": "IMGT nomenclature: TRBV25-1"}], "pro_ids": ["PR:A0A075B6N4"], "gene_symbols": ["TRBV25-1"], "ncbi_gene_ids": [], "identifier_status": "mapped", "status": "mapped", "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", "resolution_policy": {"marker_token": "TCRVB11", "representation": "single_protein", "protein_resolution": "allow", "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVb11", "registry_sha256": "3b0361d975e31467580067f5d17823f53d425f9d2b5ef44745fee1aba08ca941"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "TCRVd2", "affected_subjects": ["SOULCAP:SC000122"], "records": [{"marker_token": "TCRVd2", "marker_synonyms": "", "source_columns": "Required phenotypic markers", "pro_id": "PR:A0JD36", "pro_label": "T cell receptor delta variable 2 (human)", "uniprot_id": "A0JD36", "uniprot_label": "T cell receptor delta variable 2 (human)", "gene_symbol": "TRDV2", "hgnc_id": "HGNC:12263", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "medium", "evidence": "https://rest.genenames.org/fetch/symbol/TRDV2; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0JD36", "notes": "IMGT nomenclature: TRDV2"}], "pro_ids": ["PR:A0JD36"], "gene_symbols": ["TRDV2"], "ncbi_gene_ids": [], "identifier_status": "mapped", "status": "mapped", "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", "resolution_policy": {"marker_token": "TCRVD2", "representation": "single_protein", "protein_resolution": "allow", "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVd2", "registry_sha256": "5fb0b153ecc148621ec7c97ffea4618dcaf12f3f62d1642acfb303c5179ef2ec"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "TCRVg9", "affected_subjects": ["SOULCAP:SC000122"], "records": [{"marker_token": "TCRVg9", "marker_synonyms": "", "source_columns": "Required phenotypic markers", "pro_id": "PR:Q99603", "pro_label": "T cell receptor gamma variable 9 (human)", "uniprot_id": "Q99603", "uniprot_label": "T cell receptor gamma variable 9 (human)", "gene_symbol": "TRGV9", "hgnc_id": "HGNC:12295", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "medium", "evidence": "https://rest.genenames.org/fetch/symbol/TRGV9; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_Q99603", "notes": "IMGT nomenclature: TRGV9"}], "pro_ids": ["PR:Q99603"], "gene_symbols": ["TRGV9"], "ncbi_gene_ids": [], "identifier_status": "mapped", "status": "mapped", "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", "resolution_policy": {"marker_token": "TCRVG9", "representation": "single_protein", "protein_resolution": "allow", "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVg9", "registry_sha256": "9318391135642e811b2781de7a9be4cc58f52c5f21dbfe8a0d316f3619f245f1"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "TCRab", "affected_subjects": ["SOULCAP:SC000049", "SOULCAP:SC000050", "SOULCAP:SC000051", "SOULCAP:SC000052", "SOULCAP:SC000053", "SOULCAP:SC000054", "SOULCAP:SC000055", "SOULCAP:SC000056", "SOULCAP:SC000057", "SOULCAP:SC000058", "SOULCAP:SC000060", "SOULCAP:SC000061", "SOULCAP:SC000066", "SOULCAP:SC000067", "SOULCAP:SC000068", "SOULCAP:SC000069", "SOULCAP:SC000070", "SOULCAP:SC000071", "SOULCAP:SC000072", "SOULCAP:SC000073", "SOULCAP:SC000122"], "records": [{"marker_token": "TCRab", "marker_synonyms": "", "source_columns": "Required phenotypic markers", "pro_id": "", "pro_label": "", "uniprot_id": "", "uniprot_label": "", "gene_symbol": "", "hgnc_id": "", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "medium", "evidence": "", "notes": "pan-\u03b1\u03b2 TCR marker; recognises assembled \u03b1\u03b2 heterodimer"}], "pro_ids": [], "gene_symbols": [], "ncbi_gene_ids": [], "identifier_status": "no_pro_mapping", "status": "documented_complex_or_family", "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", "resolution_policy": {"marker_token": "TCRAB", "representation": "complex", "protein_resolution": "withhold", "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.", "source_ref": "marker_mappings/marker_protein_gene.csv#TCRab", "registry_sha256": "db65f2afbe24e19148fe8039a5a7df5983c5e9d0963d9cff9dec278958e33382"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "TCRgd", "affected_subjects": ["SOULCAP:SC000049", "SOULCAP:SC000050", "SOULCAP:SC000051", "SOULCAP:SC000052", "SOULCAP:SC000053", "SOULCAP:SC000054", "SOULCAP:SC000055", "SOULCAP:SC000056", "SOULCAP:SC000057", "SOULCAP:SC000058", "SOULCAP:SC000060", "SOULCAP:SC000061", "SOULCAP:SC000066", "SOULCAP:SC000067", "SOULCAP:SC000068", "SOULCAP:SC000069", "SOULCAP:SC000070", "SOULCAP:SC000071", "SOULCAP:SC000072", "SOULCAP:SC000073", "SOULCAP:SC000122"], "records": [{"marker_token": "TCRgd", "marker_synonyms": "", "source_columns": "Required phenotypic markers", "pro_id": "", "pro_label": "", "uniprot_id": "", "uniprot_label": "", "gene_symbol": "", "hgnc_id": "", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "medium", "evidence": "", "notes": "pan-\u03b3\u03b4 TCR marker; recognises assembled \u03b3\u03b4 heterodimer"}], "pro_ids": [], "gene_symbols": [], "ncbi_gene_ids": [], "identifier_status": "no_pro_mapping", "status": "documented_complex_or_family", "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", "resolution_policy": {"marker_token": "TCRGD", "representation": "complex", "protein_resolution": "withhold", "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.", "source_ref": "marker_mappings/marker_protein_gene.csv#TCRgd", "registry_sha256": "49ec8f76a1338a63effb3e88e3c748f97f2753861e47ad476c1f4a96384b40ec"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "TCRva24", "affected_subjects": [], "records": [{"marker_token": "TCRva24", "marker_synonyms": "", "source_columns": "Required phenotypic markers", "pro_id": "PR:A0A0B4J240", "pro_label": "T cell receptor alpha variable 10 (human)", "uniprot_id": "A0A0B4J240", "uniprot_label": "T cell receptor alpha variable 10 (human)", "gene_symbol": "TRAV10", "hgnc_id": "HGNC:12103", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "medium", "evidence": "https://rest.genenames.org/fetch/symbol/TRAV10; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J240", "notes": "Likely duplicate of TCRVa24 (different capitalisation) \u2014 data quality issue; mapped identically to TCRVa24 / TRAV10"}], "pro_ids": ["PR:A0A0B4J240"], "gene_symbols": ["TRAV10"], "ncbi_gene_ids": [], "identifier_status": "mapped", "status": "mapped", "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", "resolution_policy": {"marker_token": "TCRVA24", "representation": "single_protein", "protein_resolution": "allow", "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVa24", "registry_sha256": "f81c80eeaa4d2de919813822e062fe2e4210b8a025bd76ebbad546bdd0936315"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "Tetramer", "affected_subjects": [], "records": [{"marker_token": "Tetramer", "marker_synonyms": "", "source_columns": "Required phenotypic markers", "pro_id": "", "pro_label": "", "uniprot_id": "", "uniprot_label": "", "gene_symbol": "", "hgnc_id": "", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "low", "evidence": "", "notes": "generic reagent term; not a specific protein"}], "pro_ids": [], "gene_symbols": [], "ncbi_gene_ids": [], "identifier_status": "no_pro_mapping", "status": "documented_nonprotein_or_reagent", "status_reason": "Registry notes document a non-protein gate or reagent; a single gene/PRO mapping may not apply.", "resolution_policy": {"marker_token": "TETRAMER", "representation": "reagent_gate", "protein_resolution": "withhold", "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.", "source_ref": "marker_mappings/marker_protein_gene.csv#Tetramer", "registry_sha256": "2f3894386ee2918f58d53b858eebc8e09729f16699a8f9d6faab2d5900495227"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "V", "affected_subjects": ["SOULCAP:SC000122", "SOULCAP:SC000123"], "records": [{"marker_token": "V", "marker_synonyms": "", "source_columns": "Ideal phenotypic markers|Required phenotypic markers", "pro_id": "", "pro_label": "", "uniprot_id": "", "uniprot_label": "", "gene_symbol": "", "hgnc_id": "", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "low", "evidence": "", "notes": "likely parsing artifact from multi-word TCR gene name \u2014 data quality issue; see reports/marker_validation.md"}], "pro_ids": [], "gene_symbols": [], "ncbi_gene_ids": [], "identifier_status": "no_pro_mapping", "status": "source_artifact_needs_review", "status_reason": "Registry notes describe a possible parsing artifact; source clarification is needed.", "resolution_policy": {"marker_token": "V", "representation": "unresolved", "protein_resolution": "withhold", "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.", "source_ref": "marker_mappings/marker_protein_gene.csv#V", "registry_sha256": "610b267c4ba493d65f1528fb008a91bcab513fe39cd039617f4ba0313b50fa61"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "VB11", "affected_subjects": [], "records": [{"marker_token": "VB11", "marker_synonyms": "", "source_columns": "Required phenotypic markers", "pro_id": "PR:A0A075B6N4", "pro_label": "T cell receptor beta variable 25-1 (human)", "uniprot_id": "A0A075B6N4", "uniprot_label": "T cell receptor beta variable 25-1 (human)", "gene_symbol": "TRBV25-1", "hgnc_id": "HGNC:12205", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "medium", "evidence": "https://rest.genenames.org/fetch/symbol/TRBV25-1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A075B6N4", "notes": "Duplicate of TCRVb11 (uppercase) \u2014 data quality issue; same mapping as TCRVb11 / TRBV25-1"}], "pro_ids": ["PR:A0A075B6N4"], "gene_symbols": ["TRBV25-1"], "ncbi_gene_ids": [], "identifier_status": "mapped", "status": "mapped", "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", "resolution_policy": {"marker_token": "VB11", "representation": "single_protein", "protein_resolution": "allow", "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", "source_ref": "marker_mappings/marker_protein_gene.csv#VB11", "registry_sha256": "6642023972a293e8a24efa26bb504964bc55c6f68d25a2186fd5609b89465e9f"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "Vb11", "affected_subjects": [], "records": [{"marker_token": "Vb11", "marker_synonyms": "", "source_columns": "Required phenotypic markers", "pro_id": "PR:A0A075B6N4", "pro_label": "T cell receptor beta variable 25-1 (human)", "uniprot_id": "A0A075B6N4", "uniprot_label": "T cell receptor beta variable 25-1 (human)", "gene_symbol": "TRBV25-1", "hgnc_id": "HGNC:12205", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "medium", "evidence": "https://rest.genenames.org/fetch/symbol/TRBV25-1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A075B6N4", "notes": "Duplicate of TCRVb11 \u2014 data quality issue; same mapping as TCRVb11 / TRBV25-1"}], "pro_ids": ["PR:A0A075B6N4"], "gene_symbols": ["TRBV25-1"], "ncbi_gene_ids": [], "identifier_status": "mapped", "status": "mapped", "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", "resolution_policy": {"marker_token": "VB11", "representation": "single_protein", "protein_resolution": "allow", "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", "source_ref": "marker_mappings/marker_protein_gene.csv#VB11", "registry_sha256": "6642023972a293e8a24efa26bb504964bc55c6f68d25a2186fd5609b89465e9f"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "Vd1", "affected_subjects": [], "records": [{"marker_token": "Vd1", "marker_synonyms": "", "source_columns": "Required phenotypic markers", "pro_id": "PR:A0A1B0GX56", "pro_label": "T cell receptor delta variable 1 (human)", "uniprot_id": "A0A1B0GX56", "uniprot_label": "T cell receptor delta variable 1 (human)", "gene_symbol": "TRDV1", "hgnc_id": "HGNC:12262", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "medium", "evidence": "https://rest.genenames.org/fetch/symbol/TRDV1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A1B0GX56", "notes": "IMGT nomenclature: TRDV1"}], "pro_ids": ["PR:A0A1B0GX56"], "gene_symbols": ["TRDV1"], "ncbi_gene_ids": [], "identifier_status": "mapped", "status": "mapped", "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", "resolution_policy": {"marker_token": "VD1", "representation": "single_protein", "protein_resolution": "allow", "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", "source_ref": "marker_mappings/marker_protein_gene.csv#Vd1", "registry_sha256": "adcc38bd179456a5c30cbddcb322a4cec7c64ca04f5c0f5ca79aef2703ee25fc"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "delta", "affected_subjects": [], "records": [{"marker_token": "delta", "marker_synonyms": "", "source_columns": "Ideal phenotypic markers|Required phenotypic markers", "pro_id": "", "pro_label": "", "uniprot_id": "", "uniprot_label": "", "gene_symbol": "", "hgnc_id": "", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "low", "evidence": "", "notes": "likely parsing artifact from multi-word TCR gene name \u2014 data quality issue; see reports/marker_validation.md"}], "pro_ids": [], "gene_symbols": [], "ncbi_gene_ids": [], "identifier_status": "no_pro_mapping", "status": "source_artifact_needs_review", "status_reason": "Registry notes describe a possible parsing artifact; source clarification is needed.", "resolution_policy": {"marker_token": "DELTA", "representation": "unresolved", "protein_resolution": "withhold", "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.", "source_ref": "marker_mappings/marker_protein_gene.csv#delta", "registry_sha256": "83aed236bb5fcdc28afafd651c50af0e2bc053b7d9f64f979e47e39e66751b5e"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "delta1", "affected_subjects": ["SOULCAP:SC000122", "SOULCAP:SC000123"], "records": [{"marker_token": "delta1", "marker_synonyms": "", "source_columns": "Ideal phenotypic markers", "pro_id": "", "pro_label": "", "uniprot_id": "", "uniprot_label": "", "gene_symbol": "", "hgnc_id": "", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "low", "evidence": "", "notes": "likely parsing artifact from multi-word TCR gene name \u2014 data quality issue; see reports/marker_validation.md"}], "pro_ids": [], "gene_symbols": [], "ncbi_gene_ids": [], "identifier_status": "no_pro_mapping", "status": "source_artifact_needs_review", "status_reason": "Registry notes describe a possible parsing artifact; source clarification is needed.", "resolution_policy": {"marker_token": "DELTA1", "representation": "unresolved", "protein_resolution": "withhold", "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.", "source_ref": "marker_mappings/marker_protein_gene.csv#delta1", "registry_sha256": "5b366a2c0a5c2f3a19355bb66e4ad0f88c172aa901c577aa9b16acff92294995"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}, {"marker_token": "gamma", "affected_subjects": [], "records": [{"marker_token": "gamma", "marker_synonyms": "", "source_columns": "Ideal phenotypic markers|Required phenotypic markers", "pro_id": "", "pro_label": "", "uniprot_id": "", "uniprot_label": "", "gene_symbol": "", "hgnc_id": "", "ncbi_gene_id": "", "mapping_method": "manual", "confidence": "low", "evidence": "", "notes": "likely parsing artifact from multi-word TCR gene name \u2014 data quality issue; see reports/marker_validation.md"}], "pro_ids": [], "gene_symbols": [], "ncbi_gene_ids": [], "identifier_status": "no_pro_mapping", "status": "source_artifact_needs_review", "status_reason": "Registry notes describe a possible parsing artifact; source clarification is needed.", "resolution_policy": {"marker_token": "GAMMA", "representation": "unresolved", "protein_resolution": "withhold", "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.", "source_ref": "marker_mappings/marker_protein_gene.csv#gamma", "registry_sha256": "dc9b95fd067723b54cfdb2e4fcf8948e571b2dfc83b0fa6dc407a4bcf6f402be"}, "classification_basis": "Local registry identifiers and notes; not externally verified."}], "gaps": [{"soulcap_abbreviation": "NK", "soulcap_full_name": "Natural Killer Cell", "gap_type": "cl_axiom_gap", "description": "CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the field-standard defining positive marker CD56 is absent from its own axioms, though present on its child terms.", "related_cl_ids": "CL:0000623", "evidence": "reports/cl_pro_relationships.md; reports/literature/nk_cell_markers.md; reports/cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623", "status": "open", "repo_issue": "(not yet filed)", "date_logged": "2026-07-22", "association": "exact_abbreviation", "subject_ids": ["SOULCAP:SC000001"], "candidate_subject_ids": ["SOULCAP:SC000001"], "evidence_links": [{"label": "reports/cl_pro_relationships.md", "href": "../../cl_pro_relationships.md"}, {"label": "reports/literature/nk_cell_markers.md", "href": "../../literature/nk_cell_markers.md"}, {"label": "reports/cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623", "href": "../../cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623"}]}, {"soulcap_abbreviation": "NK1 / NK3", "soulcap_full_name": "Natural Killer Cell 1 / Natural Killer Cell 3", "gap_type": "cl_axiom_gap", "description": "CL:0000939 (CD16-positive, CD56-dim NK cell, human) does not distinguish CD57-negative (NK1) from CD57-positive (NK3) substates; both SOULCAP rows currently map to the same CL term at Broad match type.", "related_cl_ids": "CL:0000939", "evidence": "reports/candidate_cl_mappings_narrative.md#ctnk--nk1--nk3--cytotoxic-natural-killer-cell-cd16-positive", "status": "open", "repo_issue": "(not yet filed)", "date_logged": "2026-07-22", "association": "family_or_unresolved", "subject_ids": [], "candidate_subject_ids": [], "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md#ctnk--nk1--nk3--cytotoxic-natural-killer-cell-cd16-positive", "href": "../../candidate_cl_mappings_narrative.md#ctnk--nk1--nk3--cytotoxic-natural-killer-cell-cd16-positive"}]}, {"soulcap_abbreviation": "ILC1", "soulcap_full_name": "Innate Lymphoid Cell 1", "gap_type": "cl_axiom_gap", "description": "No human-specific \"group 1 innate lymphoid cell\" CL term exists, unlike group 2 (CL:0001081) and group 3 (CL:0001078); confirmed by direct OLS4 search returning zero hits for the human-qualified query.", "related_cl_ids": "CL:0001067", "evidence": "reports/cl_term_issues.md#missing-human-specific-group-1-innate-lymphoid-cell-term", "status": "filed_as_issue", "repo_issue": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14", "date_logged": "2026-07-23", "association": "exact_abbreviation", "subject_ids": ["SOULCAP:SC000008"], "candidate_subject_ids": ["SOULCAP:SC000008"], "evidence_links": [{"label": "reports/cl_term_issues.md#missing-human-specific-group-1-innate-lymphoid-cell-term", "href": "../../cl_term_issues.md#missing-human-specific-group-1-innate-lymphoid-cell-term"}, {"label": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14", "href": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14"}]}, {"soulcap_abbreviation": "Transitional", "soulcap_full_name": "Transitional B cell", "gap_type": "no_reasonable_cl_match", "description": "SOULCAP row has all four marker columns (Required/Ideal exclusion, Required/Ideal phenotypic markers) completely empty in the master sheet \u2014 there is no marker definition to match against at all, so no CL candidate can be derived from markers. Distinct from the more specific \"T3\" (Transitional B cell 3) row, which does have marker data.", "related_cl_ids": "(none)", "evidence": "reports/candidate_cl_mappings_batch.tsv (note column); data/marker_combinations.csv", "status": "open", "repo_issue": "(not yet filed)", "date_logged": "2026-07-24", "association": "exact_abbreviation", "subject_ids": ["SOULCAP:SC000027"], "candidate_subject_ids": ["SOULCAP:SC000027"], "evidence_links": [{"label": "reports/candidate_cl_mappings_batch.tsv", "href": "../../candidate_cl_mappings_batch.tsv"}, {"label": "data/marker_combinations.csv", "href": "../../../data/marker_combinations.csv"}]}, {"soulcap_abbreviation": "CTNK", "soulcap_full_name": "Cytotoxic Natural Killer Cell", "gap_type": "sheet_data_issue", "description": "Sheet's Full Name reads \"Cytotoxice Natural Killer Cell\" (typo, extra trailing \"e\"); this broke batch lexical search entirely for the row (zero OLS4 hits). Marker-based match was unaffected. Cannot be fixed in this repo \u2014 requires a correction in the Google Sheet master.", "related_cl_ids": "CL:0000939", "evidence": "reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells", "status": "open", "repo_issue": "(not yet filed)", "date_logged": "2026-07-22", "association": "exact_abbreviation", "subject_ids": ["SOULCAP:SC000003"], "candidate_subject_ids": ["SOULCAP:SC000003"], "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells", "href": "../../candidate_cl_mappings_narrative.md#dc-family--dendritic-cells"}]}, {"soulcap_abbreviation": "pDC", "soulcap_full_name": "Peripheral Dendritic Cell (as written)", "gap_type": "sheet_data_issue", "description": "Sheet's Full Name reads \"Peripheral Dendritic Cell,\" but the row's markers (CD123hi, CD303+, low CD33) are the textbook definition of plasmacytoid dendritic cells \u2014 likely a wrong word, should probably read \"Plasmacytoid.\" This broke batch lexical search (returned an unrelated \"migratory dendritic cell\" hit). Cannot be fixed in this repo \u2014 requires a correction in the Google Sheet master.", "related_cl_ids": "CL:0001058", "evidence": "reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells", "status": "open", "repo_issue": "(not yet filed)", "date_logged": "2026-07-22", "association": "exact_abbreviation", "subject_ids": ["SOULCAP:SC000014"], "candidate_subject_ids": ["SOULCAP:SC000014"], "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells", "href": "../../candidate_cl_mappings_narrative.md#dc-family--dendritic-cells"}]}, {"soulcap_abbreviation": "Mono", "soulcap_full_name": "Monocyte", "gap_type": "cl_axiom_gap", "description": "CL:0000576 (plain \"monocyte\") has zero marker axiom rows in cl_pro_relationships.tsv \u2014 same parent-class axiom-gap pattern as NK/ILC/cDC/B cell. Match is lexical-only (OAK-verified), not marker-confirmed.", "related_cl_ids": "CL:0000576", "evidence": "reports/candidate_cl_mappings_narrative.md#monocyte-family; reports/cl_pro_relationships.tsv", "status": "open", "repo_issue": "(not yet filed)", "date_logged": "2026-07-24", "association": "exact_abbreviation", "subject_ids": ["SOULCAP:SC000017"], "candidate_subject_ids": ["SOULCAP:SC000017"], "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md#monocyte-family", "href": "../../candidate_cl_mappings_narrative.md#monocyte-family"}, {"label": "reports/cl_pro_relationships.tsv", "href": "../../cl_pro_relationships.tsv"}]}, {"soulcap_abbreviation": "CMo / NCMo / IntMo", "soulcap_full_name": "Classical / Non-classical / Intermediate Monocyte", "gap_type": "cl_axiom_gap", "description": "CL:0000860/CL:0000875/CL:0002393 assert only CCR2 (CD192) and CX3CR1 status plus lineage negatives \u2014 none assert the CD14/CD16 axioms that actually define these three subsets per Ziegler-Heitbrock et al. 2010 (PMID:20628149). Already covered by repo issue #12 (filed upstream as CL#3665) \u2014 not a new gap, cited here for context on why these rows can only be matched lexically.", "related_cl_ids": "CL:0000860; CL:0000875; CL:0002393", "evidence": "reports/candidate_cl_mappings_narrative.md#monocyte-family; https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12", "status": "filed_as_issue", "repo_issue": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12", "date_logged": "2026-07-24", "association": "family_or_unresolved", "subject_ids": [], "candidate_subject_ids": [], "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md#monocyte-family", "href": "../../candidate_cl_mappings_narrative.md#monocyte-family"}, {"label": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12", "href": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12"}, {"label": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12", "href": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12"}]}, {"soulcap_abbreviation": "Mono / CMo / NCMo / IntMo", "soulcap_full_name": "Monocyte family", "gap_type": "sheet_data_issue", "description": "Required exclusion column reads \"CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)\" for all four rows \u2014 the second group is missing a \"]\" after CD123hi (likely should read \"([CD123hi]-|CD193-)\", matching the cDC/pDC pattern). Cannot be fixed in this repo \u2014 requires a correction in the Google Sheet master.", "related_cl_ids": "(none)", "evidence": "reports/candidate_cl_mappings_narrative.md#monocyte-family; data/marker_combinations.csv", "status": "open", "repo_issue": "(not yet filed)", "date_logged": "2026-07-24", "association": "family_or_unresolved", "subject_ids": [], "candidate_subject_ids": [], "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md#monocyte-family", "href": "../../candidate_cl_mappings_narrative.md#monocyte-family"}, {"label": "data/marker_combinations.csv", "href": "../../../data/marker_combinations.csv"}]}, {"soulcap_abbreviation": "B cell", "soulcap_full_name": "B cell", "gap_type": "cl_axiom_gap", "description": "CL:0000236 (plain \"B cell\") has zero marker axiom rows in cl_pro_relationships.tsv \u2014 same parent-class axiom-gap pattern as NK/ILC/cDC/monocyte. Match is lexical-only (OAK-verified after OLS4 REST search returned zero hits for this exact query), not marker-confirmed.", "related_cl_ids": "CL:0000236", "evidence": "reports/candidate_cl_mappings_narrative.md#b-cell-parent; reports/cl_pro_relationships.tsv", "status": "open", "repo_issue": "(not yet filed)", "date_logged": "2026-07-24", "association": "exact_abbreviation", "subject_ids": ["SOULCAP:SC000023"], "candidate_subject_ids": ["SOULCAP:SC000023"], "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md#b-cell-parent", "href": "../../candidate_cl_mappings_narrative.md#b-cell-parent"}, {"label": "reports/cl_pro_relationships.tsv", "href": "../../cl_pro_relationships.tsv"}]}, {"soulcap_abbreviation": "BDN1 / BDN2 / BDN3 / BDN4", "soulcap_full_name": "Double Negative B cell 1-4", "gap_type": "cl_axiom_gap", "description": "SOULCAP defines four \"double negative\" B cell subsets (DN1-4, the atypical/age-associated B cell scheme from the autoimmunity/aging literature) via CD21/CD11c/CD185/IgE combinations. CL has only the general parent CL:0000981 \"double negative memory B cell\" with no DN1-4 subtyping; direct searches for \"DN1 B cell\" through \"DN4 B cell\" and \"atypical memory B cell\" returned zero CL hits. All four SOULCAP rows currently collapse to the same Broad match.", "related_cl_ids": "CL:0000981", "evidence": "reports/candidate_cl_mappings_narrative.md#b-cell-maturation-tree--transitional--mature--naive--double-negative", "status": "open", "repo_issue": "(not yet filed)", "date_logged": "2026-07-24", "association": "family_or_unresolved", "subject_ids": [], "candidate_subject_ids": [], "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md#b-cell-maturation-tree--transitional--mature--naive--double-negative", "href": "../../candidate_cl_mappings_narrative.md#b-cell-maturation-tree--transitional--mature--naive--double-negative"}]}, {"soulcap_abbreviation": "IgD only", "soulcap_full_name": "IgD only Memory B cell", "gap_type": "cl_axiom_gap", "description": "SOULCAP distinguishes IgD+IgM- (\"IgD only\") from IgD+IgM+ (\"Unswitched\") memory B cells as two separate populations. No CL term exists for the IgD+IgM- subset \u2014 direct searches for \"IgD-positive memory B cell\" and \"IgD only memory B cell\" returned zero hits; the only IgD-related term found, CL:0001053 \"IgD-negative memory B cell,\" is the opposite polarity. Left unmapped rather than forced onto a wrong-polarity term.", "related_cl_ids": "CL:0001053 (wrong polarity, not used)", "evidence": "reports/candidate_cl_mappings_narrative.md#memory-b-cell-tree", "status": "open", "repo_issue": "(not yet filed)", "date_logged": "2026-07-24", "association": "exact_abbreviation", "subject_ids": ["SOULCAP:SC000038"], "candidate_subject_ids": ["SOULCAP:SC000038"], "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md#memory-b-cell-tree", "href": "../../candidate_cl_mappings_narrative.md#memory-b-cell-tree"}]}, {"soulcap_abbreviation": "CD4+ T cell / CD8+ T cell / CD4+/CD8+ T cell / CD4-/CD8- T cell / CD4+/CD8+ TCRab T cell / CD4-/CD8- TCRab T cell / CD4+ TCRgd T cell / CD8+ TCRgd T cell / CD4+/CD8+ TCRgd", "soulcap_full_name": "various", "gap_type": "cl_axiom_gap", "description": "CL organizes CD4/CD8 status primarily under the alpha-beta T cell lineage: no combined alpha-beta+gamma-delta CD4/CD8 terms exist, no clean double-positive alpha-beta term exists, and the only double-negative term found (CL:0002489) is a thymocyte-stage term (wrong tissue for a blood/PBMC panel). All 9 rows Broad-matched to the nearest alpha-beta or gamma-delta parent with this gap noted.", "related_cl_ids": "CL:0000624; CL:0000625; CL:0000789; CL:0000084; CL:0000798", "evidence": "reports/candidate_cl_mappings_narrative.md#combined-lineage-b-and-double-positivedouble-negative-gaps", "status": "open", "repo_issue": "(not yet filed)", "date_logged": "2026-07-24", "association": "family_or_unresolved", "subject_ids": [], "candidate_subject_ids": [], "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md#combined-lineage-b-and-double-positivedouble-negative-gaps", "href": "../../candidate_cl_mappings_narrative.md#combined-lineage-b-and-double-positivedouble-negative-gaps"}]}, {"soulcap_abbreviation": "CD56+ T cell family (13 rows)", "soulcap_full_name": "various CD56+ T cell subsets", "gap_type": "cl_axiom_gap", "description": "SOULCAP crosses CD56 positivity with CD4/CD8/DP/DN status and TCRab/TCRgd lineage (13 variants); CL has only one term at this level (CL:4052055, pending rename to \"CD56-positive T cell, human\" per issue #13) with no further subdivision. All 13 rows Broad-match to CL:4052055.", "related_cl_ids": "CL:4052055", "evidence": "reports/candidate_cl_mappings_narrative.md#cd56-t-cell-family; https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13", "status": "open", "repo_issue": "(not yet filed)", "date_logged": "2026-07-24", "association": "family_or_unresolved", "subject_ids": [], "candidate_subject_ids": [], "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md#cd56-t-cell-family", "href": "../../candidate_cl_mappings_narrative.md#cd56-t-cell-family"}, {"label": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13", "href": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13"}]}, {"soulcap_abbreviation": "Tcm / Tem / Temra (general, no CD4/CD8 split) and all TCRgd-specific Tnaive/Tcm/Tem/Temra rows", "soulcap_full_name": "various", "gap_type": "cl_axiom_gap", "description": "CL has no generic central/effector memory T cell term spanning both CD4 and CD8 (only CD4-specific and CD8-specific versions exist), and no gamma-delta-specific differentiation-state terms at all. ~13 rows Broad-matched to the nearest available parent (CL:0000084 T cell, or CL:0000798 gamma-delta T cell) with this gap noted.", "related_cl_ids": "CL:0000084; CL:0000798", "evidence": "reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree", "status": "open", "repo_issue": "(not yet filed)", "date_logged": "2026-07-24", "association": "family_or_unresolved", "subject_ids": [], "candidate_subject_ids": [], "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree", "href": "../../candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree"}]}, {"soulcap_abbreviation": "CD8+ Temra / CD8+ TCRab Temra", "soulcap_full_name": "CD8+ CD45RA+ effector memory T cell", "gap_type": "cl_axiom_gap", "description": "CL:4030002 (effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated) appears to be CD4-specific only; no CD8+ counterpart with the same \"terminally differentiated\" qualifier was found \u2014 only the non-TEMRA-specific CL:0000913 (effector memory CD8-positive, alpha-beta T cell). Possible asymmetry in CL's own hierarchy; needs a second look before concluding it's a genuine omission rather than differently-named.", "related_cl_ids": "CL:4030002; CL:0000913", "evidence": "reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree", "status": "open", "repo_issue": "(not yet filed)", "date_logged": "2026-07-24", "association": "family_or_unresolved", "subject_ids": [], "candidate_subject_ids": [], "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree", "href": "../../candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree"}]}, {"soulcap_abbreviation": "(26 rows, various abbreviations)", "soulcap_full_name": "(no Full Name in sheet)", "gap_type": "sheet_data_issue", "description": "26 rows in the T cell branch have a completely empty Full Name field, so no name-based match can be attempted (Conv TCRab family, T helper, T cytotoxic, Tfh, CD4 PanT helper/Treg, ConT Treg-like/Tfh-like, Th1/2/9/17-like, Vg9/Vd1/Vd2/Vd3 subsets). Additionally, Th1-like/Th2-like/Th9-like/Th17-like each appear TWICE in the sheet: one copy (parented under \"CD4 ConT\") has iNKT-style TCRVa24-Ja18/CD1d-a-GalCer markers that look copy-pasted from an unrelated row; the other (no parent) has the correct Th-subset chemokine receptor panel (CD183/CD185/CD194/CD196). Likely a genuine sheet data bug, not two intentional variants. Cannot be fixed here \u2014 requires correction in the Google Sheet master.", "related_cl_ids": "CL:0000912 (T helper, once named); CL:0000910 (T cytotoxic, once named)", "evidence": "reports/candidate_cl_mappings_narrative.md#rows-with-no-full-name-in-the-sheet--not-mapped", "status": "open", "repo_issue": "(not yet filed)", "date_logged": "2026-07-24", "association": "family_or_unresolved", "subject_ids": [], "candidate_subject_ids": [], "evidence_links": [{"label": "reports/candidate_cl_mappings_narrative.md#rows-with-no-full-name-in-the-sheet--not-mapped", "href": "../../candidate_cl_mappings_narrative.md#rows-with-no-full-name-in-the-sheet--not-mapped"}]}], "findings": [{"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000017", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000018", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000019", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000020", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000059", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000074", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000075", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000076", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000077", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000078", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000079", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000107", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000109", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000110", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000111", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000112", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000113", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000114", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000123", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000124", "message": "2 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000125", "message": "1 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000126", "message": "2 marker cell(s) cannot be scored."}, {"severity": "error", "code": "invalid_profile", "subject": "SOULCAP:SC000127", "message": "2 marker cell(s) cannot be scored."}, {"severity": "warning", "code": "uncertain_proposal", "subject": "SOULCAP:SC000006", "message": "Proposal for CL:0001074 is explicitly uncertain."}, {"severity": "warning", "code": "uncertain_proposal", "subject": "SOULCAP:SC000064", "message": "Proposal for CL:0000789 is explicitly uncertain."}, {"severity": "warning", "code": "uncertain_proposal", "subject": "SOULCAP:SC000065", "message": "Proposal for CL:0000084 is explicitly uncertain."}, {"severity": "warning", "code": "uncertain_proposal", "subject": "SOULCAP:SC000068", "message": "Proposal for CL:0000789 is explicitly uncertain."}, {"severity": "warning", "code": "uncertain_proposal", "subject": "SOULCAP:SC000069", "message": "Proposal for CL:0000789 is explicitly uncertain."}, {"severity": "warning", "code": "uncertain_proposal", "subject": "SOULCAP:SC000070", "message": "Proposal for CL:0000798 is explicitly uncertain."}, {"severity": "warning", "code": "uncertain_proposal", "subject": "SOULCAP:SC000071", "message": "Proposal for CL:0000798 is explicitly uncertain."}, {"severity": "warning", "code": "uncertain_proposal", "subject": "SOULCAP:SC000072", "message": "Proposal for CL:0000798 is explicitly uncertain."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000001", "message": "CL:0000623: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000002", "message": "CL:0000938: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000003", "message": "CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000004", "message": "CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000005", "message": "CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000006", "message": "CL:0001074: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000007", "message": "CL:0001065: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000008", "message": "CL:0001067: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000009", "message": "CL:0001081: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000010", "message": "CL:0001078: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000011", "message": "CL:0000990: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000012", "message": "CL:0002394: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000013", "message": "CL:0002399: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000014", "message": "CL:0001058: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000015", "message": "CL:0000043: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000016", "message": "CL:0000043: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000017", "message": "CL:0000576: structured fields empty: literature_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000018", "message": "CL:0000860: structured fields empty: literature_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000019", "message": "CL:0000875: structured fields empty: literature_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000020", "message": "CL:0002393: structured fields empty: literature_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000021", "message": "CL:0000775: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000022", "message": "CL:0000771: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000023", "message": "CL:0000236: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000024", "message": "CL:0000946: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000025", "message": "CL:0000980: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000026", "message": "CL:0000786: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000028", "message": "CL:0000818: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000029", "message": "CL:0000785: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000030", "message": "CL:0000960: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000031", "message": "CL:0000788: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000032", "message": "CL:0000981: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000033", "message": "CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000034", "message": "CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000035", "message": "CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000036", "message": "CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000037", "message": "CL:0000787: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000039", "message": "CL:0000970: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000040", "message": "CL:0000971: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000041", "message": "CL:0000972: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000042", "message": "CL:0000973: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000043", "message": "CL:0000979: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000044", "message": "CL:0000948: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000045", "message": "CL:0000084: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000046", "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000047", "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000048", "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000049", "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000050", "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000051", "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000052", "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000053", "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000054", "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000055", "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000056", "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000057", "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000058", "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000059", "message": "CL:0000814: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000060", "message": "CL:0000789: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000061", "message": "CL:0000798: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000062", "message": "CL:0000624: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000063", "message": "CL:0000625: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000064", "message": "CL:0000789: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000065", "message": "CL:0000084: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000066", "message": "CL:0000624: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000067", "message": "CL:0000625: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000068", "message": "CL:0000789: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000069", "message": "CL:0000789: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000070", "message": "CL:0000798: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000071", "message": "CL:0000798: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000072", "message": "CL:0000798: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000073", "message": "CL:0000803: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000074", "message": "CL:0000940: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000082", "message": "CL:0000904: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000085", "message": "CL:0000907: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000087", "message": "CL:0000898: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000089", "message": "CL:0000895: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000092", "message": "CL:0000900: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000096", "message": "CL:0000905: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000099", "message": "CL:0000913: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence."}, {"severity": "info", "code": "evidence_not_recorded", "subject": "SOULCAP:SC000103", "message": "CL:4030002: structured fields empty: literature_evidence, curator_evidence. 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DOI:10.3389/fimmu.2017.00360)", "quote": "ILCs are identified as \u201clineage\u201d (Lin) negative lymphocytes, lacking expression of surface markers more specifically expressed on T cells (CD3, CD5, TCR), B cells (CD19, CD20, BCR), myelomonocytic cells (CD14, CD15, CD36), and dendritic cells (DCs) (CD116, CD123, CD303).", "source_ref": "reports/literature/nk_cell_markers.md", "evidence_links": [{"label": "reports/literature/nk_cell_markers.md", "href": "../../literature/nk_cell_markers.md"}]}, {"cl_id": "CL:0000623", "cl_label": "natural killer cell", "pr_id": "PR:000001889", "pr_label": "CD14 molecule", "cd_synonym": "CD14 (label)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892)", "quote": "there also exists a CD56\u2212 NK cell subpopulation, namely CD3\u2212CD4\u2212CD14\u2212CD19\u2212CD16+NKp46+ lymphocytes", "source_ref": "reports/literature/nk_cell_markers.md", "evidence_links": [{"label": "reports/literature/nk_cell_markers.md", "href": "../../literature/nk_cell_markers.md"}]}, {"cl_id": "CL:0000624", "cl_label": "CD4-positive, alpha-beta T cell", "pr_id": "PR:000025402", "pr_label": "T cell receptor co-receptor CD8", "cd_synonym": "CD8 (label)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", "quote": "CD3+/CD8\u2212/CD4+/CCR7+/CD45RA+", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000624", "cl_label": "CD4-positive, alpha-beta T cell", "pr_id": "PR:000001004", "pr_label": "CD4 molecule", "cd_synonym": "CD4 (label)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", "quote": "CD3+/CD8\u2212/CD4+/CCR7+/CD45RA+", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000625", "cl_label": "CD8-positive, alpha-beta T cell", "pr_id": "PR:000001004", "pr_label": "CD4 molecule", "cd_synonym": "CD4 (label)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", "quote": "CD3+/CD8+/CD4\u2212/CCR7+/CD45RA+", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000625", "cl_label": "CD8-positive, alpha-beta T cell", "pr_id": "PR:000025402", "pr_label": "T cell receptor co-receptor CD8", "cd_synonym": "CD8 (label)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", "quote": "CD3+/CD8+/CD4\u2212/CCR7+/CD45RA+", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000771", "cl_label": "eosinophil", "pr_id": "PR:000001254", "pr_label": "C-C chemokine receptor type 1", "cd_synonym": "CD191 (exact)", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "CD191/CCR1 not among the markers studied in PMID:38666394 (CCR3/CD193 is, but not CCR1); no other eosinophil-specific CD191 evidence found via targeted EuropePMC search.", "evidence_links": []}, {"cl_id": "CL:0000771", "cl_label": "eosinophil", "pr_id": "PR:000001255", "pr_label": "C-C chemokine receptor type 3", "cd_synonym": "CD193 (exact)", "species_support": "human", "evidence_source": "europepmc_search", "citation": "(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow", "quote": "candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5R\u03b1), HLA-DR, using 10 parameter flow cytometry", "source_ref": "https://europepmc.org/article/MED/38666394", "evidence_links": [{"label": "https://europepmc.org/article/MED/38666394", "href": "https://europepmc.org/article/MED/38666394"}]}, {"cl_id": "CL:0000771", "cl_label": "eosinophil", "pr_id": "PR:000001307", "pr_label": "CD44 molecule", "cd_synonym": "CD44 (label); CDw44 (exact)", "species_support": "human", "evidence_source": "europepmc_search", "citation": "(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow", "quote": "candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5R\u03b1), HLA-DR, using 10 parameter flow cytometry", "source_ref": "https://europepmc.org/article/MED/38666394", "evidence_links": [{"label": "https://europepmc.org/article/MED/38666394", "href": "https://europepmc.org/article/MED/38666394"}]}, {"cl_id": "CL:0000771", "cl_label": "eosinophil", "pr_id": "PR:000001343", "pr_label": "CD69 molecule", "cd_synonym": "CD69 (label)", "species_support": "human", "evidence_source": "europepmc_search", "citation": "(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow", "quote": "candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5R\u03b1), HLA-DR, using 10 parameter flow cytometry", "source_ref": "https://europepmc.org/article/MED/38666394", "evidence_links": [{"label": "https://europepmc.org/article/MED/38666394", "href": "https://europepmc.org/article/MED/38666394"}]}, {"cl_id": "CL:0000771", "cl_label": "eosinophil", "pr_id": "PR:000005178", "pr_label": "CD9 molecule", "cd_synonym": "CD9 (label)", "species_support": "human", "evidence_source": "europepmc_search", "citation": "(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow", "quote": "candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5R\u03b1), HLA-DR, using 10 parameter flow cytometry", "source_ref": "https://europepmc.org/article/MED/38666394", "evidence_links": [{"label": "https://europepmc.org/article/MED/38666394", "href": "https://europepmc.org/article/MED/38666394"}]}, {"cl_id": "CL:0000775", "cl_label": "neutrophil", "pr_id": "PR:000001479", "pr_label": "low affinity immunoglobulin gamma Fc region receptor II", "cd_synonym": "CD32 (broad)", "species_support": "human", "evidence_source": "europepmc_search", "citation": "Su K et al. 2007 (PMID:17312177; DOI:10.4049/jimmunol.178.5.3272) -- Fc\u03b3RIIb (CD32B) expression profiling in human circulating leukocytes", "quote": "we found that FcgammaRIIb is expressed on the cell surface of circulating B lymphocytes, monocytes, neutrophils, myeloid dendritic cells (DCs), and at very low levels on plasmacytoid DCs from some donors", "source_ref": "https://europepmc.org/article/MED/17312177", "evidence_links": [{"label": "https://europepmc.org/article/MED/17312177", "href": "https://europepmc.org/article/MED/17312177"}]}, {"cl_id": "CL:0000775", "cl_label": "neutrophil", "pr_id": "PR:000001879", "pr_label": "leukosialin", "cd_synonym": "CD43 (related)", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "CD43 not found in any targeted EuropePMC search in a human-neutrophil-specific context ('CD43 leukosialin human neutrophil' returned unrelated papers).", "evidence_links": []}, {"cl_id": "CL:0000786", "cl_label": "plasma cell", "pr_id": "PR:000001289", "pr_label": "membrane-spanning 4-domains subfamily A member 1", "cd_synonym": "CD20 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Griffin DO \u0026 Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)", "quote": "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired", "source_ref": "reports/literature/b_cell_markers.md", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000786", "cl_label": "plasma cell", "pr_id": "PR:000001935", "pr_label": "syndecan-1", "cd_synonym": "CD138 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Griffin DO \u0026 Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)", "quote": "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired", "source_ref": "reports/literature/b_cell_markers.md", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000787", "cl_label": "memory B cell", "pr_id": "PR:000001935", "pr_label": "syndecan-1", "cd_synonym": "CD138 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Griffin DO \u0026 Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122) -- describes the plasmablast/plasma-cell transition boundary, not memory B cells directly, but confirms CD138 as a human B-lineage differentiation marker", "quote": "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired", "source_ref": "reports/literature/b_cell_markers.md", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000787", "cl_label": "memory B cell", "pr_id": "PR:000001289", "pr_label": "membrane-spanning 4-domains subfamily A member 1", "cd_synonym": "CD20 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Griffin DO \u0026 Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)", "quote": "Mature B cells typically express both CD19 and CD20.", "source_ref": "reports/literature/b_cell_markers.md", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000788", "cl_label": "naive B cell", "pr_id": "PR:000001963", "pr_label": "CD27 molecule", "cd_synonym": "CD27 (label); CD27L (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)", "quote": "\"**N**: CD19+ CD27\u2212 CD38\u2212 CD24\u2212 IgD+\" [naive B cell gating entry, Table 1]", "source_ref": "reports/literature/b_cell_markers.md", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000788", "cl_label": "naive B cell", "pr_id": "PR:000001289", "pr_label": "membrane-spanning 4-domains subfamily A member 1", "cd_synonym": "CD20 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Griffin DO \u0026 Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)", "quote": "Mature B cells typically express both CD19 and CD20.", "source_ref": "reports/literature/b_cell_markers.md", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000803", "cl_label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell", "pr_id": "PR:000001004", "pr_label": "CD4 molecule", "cd_synonym": "CD4 (label)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Kelm M et al. 2026 (PMID: 41727470; DOI: 10.3389/fimmu.2026.1739493; PMC: PMC12920462)", "quote": "Purity of PHA- and Zole- expanded \u03b1\u03b2 and \u03b3\u03b4 T-cell cultures and MACS-isolated T-cell populations were assessed by flow cytometry using anti-CD3, CD4, CD8, \u03b3\u03b4 TCR, and \u03b1\u03b2 TCR monoclonal antibodies.", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000803", "cl_label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell", "pr_id": "PR:000001084", "pr_label": "T-cell surface glycoprotein CD8 alpha chain", "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Kelm M et al. 2026 (PMID: 41727470; DOI: 10.3389/fimmu.2026.1739493; PMC: PMC12920462)", "quote": "Purity of PHA- and Zole- expanded \u03b1\u03b2 and \u03b3\u03b4 T-cell cultures and MACS-isolated T-cell populations were assessed by flow cytometry using anti-CD3, CD4, CD8, \u03b3\u03b4 TCR, and \u03b1\u03b2 TCR monoclonal antibodies.", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000814", "cl_label": "mature NK T cell", "pr_id": "PR:000001874", "pr_label": "KLRB1-like protein", "cd_synonym": "", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Lal KG et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357)", "quote": "we defined iNKT cell subsets by the co-expression of TCR V\u03b124 and V\u03b211 among CD3+ cells, and further through their expression of CD4 and CD161", "source_ref": "reports/literature/inkt_markers.md", "evidence_links": [{"label": "reports/literature/inkt_markers.md", "href": "../../literature/inkt_markers.md"}]}, {"cl_id": "CL:0000818", "cl_label": "transitional stage B cell", "pr_id": "PR:000001408", "pr_label": "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1", "cd_synonym": "CD38 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)", "quote": "T1 (CD38+++CD24hiCD10++IgDlo/\u2212), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1\u2212)", "source_ref": "reports/literature/b_cell_markers.md", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000818", "cl_label": "transitional stage B cell", "pr_id": "PR:000001932", "pr_label": "signal transducer CD24", "cd_synonym": "CD24 (label); CD24A (related)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)", "quote": "T1 (CD38+++CD24hiCD10++IgDlo/\u2212), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1\u2212)", "source_ref": "reports/literature/b_cell_markers.md", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000818", "cl_label": "transitional stage B cell", "pr_id": "PR:000001289", "pr_label": "membrane-spanning 4-domains subfamily A member 1", "cd_synonym": "CD20 (exact)", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "CD20 positivity on transitional B cells is not stated verbatim in reports/literature/b_cell_markers.md -- the report only confirms CD20 on 'mature B cells' generally (Griffin \u0026 Rothstein 2012), not the transitional stage specifically.", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000860", "cl_label": "classical monocyte", "pr_id": "PR:000001199", "pr_label": "C-C chemokine receptor type 2", "cd_synonym": "CD192 (exact)", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", "evidence_links": []}, {"cl_id": "CL:0000860", "cl_label": "classical monocyte", "pr_id": "PR:000001002", "pr_label": "CD19 molecule", "cd_synonym": "CD19 (label)", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", "evidence_links": []}, {"cl_id": "CL:0000860", "cl_label": "classical monocyte", "pr_id": "PR:000001020", "pr_label": "CD3 epsilon", "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", "evidence_links": []}, {"cl_id": "CL:0000860", "cl_label": "classical monocyte", "pr_id": "PR:000001289", "pr_label": "membrane-spanning 4-domains subfamily A member 1", "cd_synonym": "CD20 (exact)", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", "evidence_links": []}, {"cl_id": "CL:0000875", "cl_label": "non-classical monocyte", "pr_id": "PR:000001206", "pr_label": "CX3C chemokine receptor 1", "cd_synonym": "", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", "evidence_links": []}, {"cl_id": "CL:0000875", "cl_label": "non-classical monocyte", "pr_id": "PR:000001002", "pr_label": "CD19 molecule", "cd_synonym": "CD19 (label)", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", "evidence_links": []}, {"cl_id": "CL:0000875", "cl_label": "non-classical monocyte", "pr_id": "PR:000001020", "pr_label": "CD3 epsilon", "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", "evidence_links": []}, {"cl_id": "CL:0000875", "cl_label": "non-classical monocyte", "pr_id": "PR:000001289", "pr_label": "membrane-spanning 4-domains subfamily A member 1", "cd_synonym": "CD20 (exact)", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", "evidence_links": []}, {"cl_id": "CL:0000895", "cl_label": "naive thymus-derived CD4-positive, alpha-beta T cell", "pr_id": "PR:000001380", "pr_label": "interleukin-2 receptor subunit alpha", "cd_synonym": "CD25 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg", "quote": "In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000898", "cl_label": "naive T cell", "pr_id": "PR:000001318", "pr_label": "L-selectin", "cd_synonym": "CD62 (exact); CD62L (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Kamigaichi A et al. 2026 (PMID: 42047825; DOI: 10.1007/s00262-026-04357-4; PMC: PMC13125411) -- confirms CD62L used on human CD4+ T cells, though in a Th1 (not naive-T) context", "quote": "Th1 (CXCR3+CCR4\u2212CCR6\u2212 CD62LlowCD4+ T cells)", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000898", "cl_label": "naive T cell", "pr_id": "PR:000001307", "pr_label": "CD44 molecule", "cd_synonym": "CD44 (label); CDw44 (exact)", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "CD44 not mentioned anywhere in reports/literature/t_cell_markers.md; not found via a targeted EuropePMC search either ('CD44 human naive T cell surface marker' returned unrelated tissue-resident-memory/B-cell papers).", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000898", "cl_label": "naive T cell", "pr_id": "PR:000001015", "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA", "cd_synonym": "CD45RA (label)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", "quote": "CD3+/CD8\u2212/CD4+/CCR7+/CD45RA+", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000898", "cl_label": "naive T cell", "pr_id": "PR:000001203", "pr_label": "C-C chemokine receptor type 7", "cd_synonym": "CD197 (exact); CDw197 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", "quote": "CD3+/CD8\u2212/CD4+/CCR7+/CD45RA+", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000898", "cl_label": "naive T cell", "pr_id": "PR:000001869", "pr_label": "interleukin-7 receptor subunit alpha", "cd_synonym": "CD127 (exact); CDw127 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg", "quote": "In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000900", "cl_label": "naive thymus-derived CD8-positive, alpha-beta T cell", "pr_id": "PR:000001380", "pr_label": "interleukin-2 receptor subunit alpha", "cd_synonym": "CD25 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg", "quote": "In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000904", "cl_label": "central memory CD4-positive, alpha-beta T cell", "pr_id": "PR:000001015", "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA", "cd_synonym": "CD45RA (label)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", "quote": "CD3+/CD8\u2212/CD4+/CCR7+/CD45RA\u2212", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000904", "cl_label": "central memory CD4-positive, alpha-beta T cell", "pr_id": "PR:000001203", "pr_label": "C-C chemokine receptor type 7", "cd_synonym": "CD197 (exact); CDw197 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", "quote": "CD3+/CD8\u2212/CD4+/CCR7+/CD45RA\u2212", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000905", "cl_label": "effector memory CD4-positive, alpha-beta T cell", "pr_id": "PR:000001015", "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA", "cd_synonym": "CD45RA (label)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", "quote": "CD3+/CD8\u2212/CD4+/CCR7\u2212/CD45RA+", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000905", "cl_label": "effector memory CD4-positive, alpha-beta T cell", "pr_id": "PR:000001203", "pr_label": "C-C chemokine receptor type 7", "cd_synonym": "CD197 (exact); CDw197 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", "quote": "CD3+/CD8\u2212/CD4+/CCR7\u2212/CD45RA+", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000907", "cl_label": "central memory CD8-positive, alpha-beta T cell", "pr_id": "PR:000001015", "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA", "cd_synonym": "CD45RA (label)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Central Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design", "quote": "CD3+/CD8+/CD4\u2212/CCR7+/CD45RA+", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000907", "cl_label": "central memory CD8-positive, alpha-beta T cell", "pr_id": "PR:000001203", "pr_label": "C-C chemokine receptor type 7", "cd_synonym": "CD197 (exact); CDw197 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Central Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design", "quote": "CD3+/CD8+/CD4\u2212/CCR7+/CD45RA+", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000913", "cl_label": "effector memory CD8-positive, alpha-beta T cell", "pr_id": "PR:000001015", "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA", "cd_synonym": "CD45RA (label)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Effector Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design", "quote": "CD3+/CD8+/CD4\u2212/CCR7+/CD45RA+", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000913", "cl_label": "effector memory CD8-positive, alpha-beta T cell", "pr_id": "PR:000001203", "pr_label": "C-C chemokine receptor type 7", "cd_synonym": "CD197 (exact); CDw197 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Effector Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design", "quote": "CD3+/CD8+/CD4\u2212/CCR7+/CD45RA+", "source_ref": "reports/literature/t_cell_markers.md", "evidence_links": [{"label": "reports/literature/t_cell_markers.md", "href": "../../literature/t_cell_markers.md"}]}, {"cl_id": "CL:0000938", "cl_label": "CD16-negative, CD56-bright natural killer cell, human", "pr_id": "PR:000001024", "pr_label": "neural cell adhesion molecule 1", "cd_synonym": "CD56 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0)", "quote": "human NK cells are typically divided into two main categories on the basis of the density of CD56, the 140-kDa isoform of the neural cell adhesion molecule (NCAM)2, on the cell surface: CD56bright and CD56dim NK cells.", "source_ref": "reports/literature/nk_cell_markers.md", "evidence_links": [{"label": "reports/literature/nk_cell_markers.md", "href": "../../literature/nk_cell_markers.md"}]}, {"cl_id": "CL:0000938", "cl_label": "CD16-negative, CD56-bright natural killer cell, human", "pr_id": "PR:000001483", "pr_label": "low affinity immunoglobulin gamma Fc region receptor III", "cd_synonym": "CD16 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360)", "quote": "CD56bright human NK cells express high levels of CD62L (l-selectin) and CD94 but absent or low levels of CD16 and KIRs", "source_ref": "reports/literature/nk_cell_markers.md", "evidence_links": [{"label": "reports/literature/nk_cell_markers.md", "href": "../../literature/nk_cell_markers.md"}]}, {"cl_id": "CL:0000938", "cl_label": "CD16-negative, CD56-bright natural killer cell, human", "pr_id": "PR:000002015", "pr_label": "MHC class II histocompatibility antigen alpha chain DRA", "cd_synonym": "", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0) -- indirect: HLA-D family expression shown on an adaptive NK subset (NK3B), not stated specifically for CD56bright/CD56dim", "quote": "Notably, NK3B (cluster 1) was distinguished by expression of members of the HLA-D gene family, CD74, CCL5, CD7 and KLRC1, and NK3A exhibited enhanced cytotoxic capabilities (through expression of GZMA, GZMB and PRF1)", "source_ref": "reports/literature/nk_cell_markers.md", "evidence_links": [{"label": "reports/literature/nk_cell_markers.md", "href": "../../literature/nk_cell_markers.md"}]}, {"cl_id": "CL:0000938", "cl_label": "CD16-negative, CD56-bright natural killer cell, human", "pr_id": "PR:000001319", "pr_label": "SLAM family member 5", "cd_synonym": "CD84 (exact)", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "No CD84-on-NK-cell evidence found in reports/literature/nk_cell_markers.md or a targeted EuropePMC search ('CD84 human natural killer cell surface marker' -- top hits were CD84 in MDSCs/breast cancer/CLL, none NK-specific).", "evidence_links": [{"label": "reports/literature/nk_cell_markers.md", "href": "../../literature/nk_cell_markers.md"}]}, {"cl_id": "CL:0000939", "cl_label": "CD16-positive, CD56-dim natural killer cell, human", "pr_id": "PR:000001024", "pr_label": "neural cell adhesion molecule 1", "cd_synonym": "CD56 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0)", "quote": "human NK cells are typically divided into two main categories on the basis of the density of CD56, the 140-kDa isoform of the neural cell adhesion molecule (NCAM)2, on the cell surface: CD56bright and CD56dim NK cells.", "source_ref": "reports/literature/nk_cell_markers.md", "evidence_links": [{"label": "reports/literature/nk_cell_markers.md", "href": "../../literature/nk_cell_markers.md"}]}, {"cl_id": "CL:0000939", "cl_label": "CD16-positive, CD56-dim natural killer cell, human", "pr_id": "PR:000002015", "pr_label": "MHC class II histocompatibility antigen alpha chain DRA", "cd_synonym": "", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0) -- indirect: HLA-D family expression shown on an adaptive NK subset (NK3B), not stated specifically for CD56bright/CD56dim", "quote": "Notably, NK3B (cluster 1) was distinguished by expression of members of the HLA-D gene family, CD74, CCL5, CD7 and KLRC1, and NK3A exhibited enhanced cytotoxic capabilities (through expression of GZMA, GZMB and PRF1)", "source_ref": "reports/literature/nk_cell_markers.md", "evidence_links": [{"label": "reports/literature/nk_cell_markers.md", "href": "../../literature/nk_cell_markers.md"}]}, {"cl_id": "CL:0000939", "cl_label": "CD16-positive, CD56-dim natural killer cell, human", "pr_id": "PR:000001483", "pr_label": "low affinity immunoglobulin gamma Fc region receptor III", "cd_synonym": "CD16 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360)", "quote": "In contrast, CD56dim NK cells are CD16hi and express more KIRs but less CD94 and CD62L; they predominate in PB", "source_ref": "reports/literature/nk_cell_markers.md", "evidence_links": [{"label": "reports/literature/nk_cell_markers.md", "href": "../../literature/nk_cell_markers.md"}]}, {"cl_id": "CL:0000960", "cl_label": "T3 B cell", "pr_id": "PR:000001318", "pr_label": "L-selectin", "cd_synonym": "CD62 (exact); CD62L (exact)", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "CD62L not mentioned in the T3-transitional context in reports/literature/b_cell_markers.md (only mentioned for DN2 B cells: 'lack of CXCR5 and CD62L expression', Sachinidis 2021, a different B cell subset).", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000960", "cl_label": "T3 B cell", "pr_id": "PR:000001338", "pr_label": "complement receptor type 2", "cd_synonym": "CD21 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)", "quote": "The gradual loss of CD10, CD5, and IgM and the upregulation of CD22, CD44, CD21, and CD23 as cells progress from immature to transitional (TI to T2 to T3) to mature na\u00efve cells", "source_ref": "reports/literature/b_cell_markers.md", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000960", "cl_label": "T3 B cell", "pr_id": "PR:000001880", "pr_label": "low affinity immunoglobulin epsilon Fc receptor", "cd_synonym": "CD23 (exact); CD23A (related)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)", "quote": "The gradual loss of CD10, CD5, and IgM and the upregulation of CD22, CD44, CD21, and CD23 as cells progress from immature to transitional (TI to T2 to T3) to mature na\u00efve cells", "source_ref": "reports/literature/b_cell_markers.md", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000970", "cl_label": "unswitched memory B cell", "pr_id": "PR:000001963", "pr_label": "CD27 molecule", "cd_synonym": "CD27 (label); CD27L (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)", "quote": "\"**M**: CD19+ CD27+ CD38\u2212/lo\" [memory B cell gating entry]", "source_ref": "reports/literature/b_cell_markers.md", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000972", "cl_label": "class switched memory B cell", "pr_id": "PR:000001963", "pr_label": "CD27 molecule", "cd_synonym": "CD27 (label); CD27L (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)", "quote": "\"**M**: CD19+ CD27+ CD38\u2212/lo\" [memory B cell gating entry]", "source_ref": "reports/literature/b_cell_markers.md", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000980", "cl_label": "plasmablast", "pr_id": "PR:000001408", "pr_label": "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1", "cd_synonym": "CD38 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)", "quote": "\"**ASC**: CD19+ CD27+ CD38hi\" and \"**M**: CD19+ CD27+ CD38\u2212/lo\" and", "source_ref": "reports/literature/b_cell_markers.md", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000980", "cl_label": "plasmablast", "pr_id": "PR:000001963", "pr_label": "CD27 molecule", "cd_synonym": "CD27 (label); CD27L (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)", "quote": "\"**ASC**: CD19+ CD27+ CD38hi\" and \"**M**: CD19+ CD27+ CD38\u2212/lo\" and", "source_ref": "reports/literature/b_cell_markers.md", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000980", "cl_label": "plasmablast", "pr_id": "PR:000001289", "pr_label": "membrane-spanning 4-domains subfamily A member 1", "cd_synonym": "CD20 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Griffin DO \u0026 Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)", "quote": "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired", "source_ref": "reports/literature/b_cell_markers.md", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000980", "cl_label": "plasmablast", "pr_id": "PR:000001935", "pr_label": "syndecan-1", "cd_synonym": "CD138 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)", "quote": "\"**CD138neg ASC**: CD138\u2212\" and \"**CD138pos ASC**: CD138+\" [gating labels distinguishing", "source_ref": "reports/literature/b_cell_markers.md", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000981", "cl_label": "double negative memory B cell", "pr_id": "PR:000001963", "pr_label": "CD27 molecule", "cd_synonym": "CD27 (label); CD27L (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Sachinidis A \u0026 Garyfallos A 2021 (PMID: 34964023; DOI: 10.31138/mjr.32.3.192)", "quote": "Double negative (DN) B cells, also known as atypical memory B cells, constitute a B cell population that lacks expression of immunoglobulin D and CD27 memory marker.", "source_ref": "reports/literature/b_cell_markers.md", "evidence_links": [{"label": "reports/literature/b_cell_markers.md", "href": "../../literature/b_cell_markers.md"}]}, {"cl_id": "CL:0000990", "cl_label": "conventional dendritic cell", "pr_id": "PR:000001013", "pr_label": "integrin alpha-X", "cd_synonym": "CD11 (exact); CD11C (related); CD11c (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)", "quote": "Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123\u2212", "source_ref": "reports/literature/dc_markers.md", "evidence_links": [{"label": "reports/literature/dc_markers.md", "href": "../../literature/dc_markers.md"}]}, {"cl_id": "CL:0001058", "cl_label": "plasmacytoid dendritic cell, human", "pr_id": "PR:000001013", "pr_label": "integrin alpha-X", "cd_synonym": "CD11 (exact); CD11C (related); CD11c (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)", "quote": "Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123\u2212", "source_ref": "reports/literature/dc_markers.md", "evidence_links": [{"label": "reports/literature/dc_markers.md", "href": "../../literature/dc_markers.md"}]}, {"cl_id": "CL:0001058", "cl_label": "plasmacytoid dendritic cell, human", "pr_id": "PR:000001889", "pr_label": "CD14 molecule", "cd_synonym": "CD14 (label)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)", "quote": "DCs were defined as live, LIN(CD3, CD19, CD56)\u2212CD14\u2212HLA-DR+ cells.", "source_ref": "reports/literature/dc_markers.md", "evidence_links": [{"label": "reports/literature/dc_markers.md", "href": "../../literature/dc_markers.md"}]}, {"cl_id": "CL:0001058", "cl_label": "plasmacytoid dendritic cell, human", "pr_id": "PR:000001865", "pr_label": "interleukin-3 receptor class 2 alpha chain", "cd_synonym": "CD123 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)", "quote": "pDCs are CD11c\u2212 CD123+ cells best characterized for their type I interferon", "source_ref": "reports/literature/dc_markers.md", "evidence_links": [{"label": "reports/literature/dc_markers.md", "href": "../../literature/dc_markers.md"}]}, {"cl_id": "CL:0001065", "cl_label": "innate lymphoid cell", "pr_id": "PR:000001002", "pr_label": "CD19 molecule", "cd_synonym": "CD19 (label)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Krabbendam L et al. 2021 (PMID:33300130; DOI:10.1002/eji.202048696)", "quote": "Subsequently we gated out non\u2010relevant lineages using antibodies against CD3, CD4, TCR\u03b1\u03b2, and TCR\u03b3\u03b4 (T cells), CD19 (B cells) CD14 (monocytes) FcR\u03b5R1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors).", "source_ref": "reports/literature/ilc_markers.md", "evidence_links": [{"label": "reports/literature/ilc_markers.md", "href": "../../literature/ilc_markers.md"}]}, {"cl_id": "CL:0001065", "cl_label": "innate lymphoid cell", "pr_id": "PR:000001020", "pr_label": "CD3 epsilon", "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Krabbendam L et al. 2021 (PMID:33300130; DOI:10.1002/eji.202048696)", "quote": "We gated for lymphocytes, excluded doublets and dead cells and selected CD45+CD3\u2212 cells", "source_ref": "reports/literature/ilc_markers.md", "evidence_links": [{"label": "reports/literature/ilc_markers.md", "href": "../../literature/ilc_markers.md"}]}, {"cl_id": "CL:0002393", "cl_label": "intermediate monocyte", "pr_id": "PR:000001002", "pr_label": "CD19 molecule", "cd_synonym": "CD19 (label)", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", "evidence_links": []}, {"cl_id": "CL:0002393", "cl_label": "intermediate monocyte", "pr_id": "PR:000001020", "pr_label": "CD3 epsilon", "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", "evidence_links": []}, {"cl_id": "CL:0002393", "cl_label": "intermediate monocyte", "pr_id": "PR:000001199", "pr_label": "C-C chemokine receptor type 2", "cd_synonym": "CD192 (exact)", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", "evidence_links": []}, {"cl_id": "CL:0002393", "cl_label": "intermediate monocyte", "pr_id": "PR:000001289", "pr_label": "membrane-spanning 4-domains subfamily A member 1", "cd_synonym": "CD20 (exact)", "species_support": "insufficient_evidence", "evidence_source": "none", "citation": "", "quote": "", "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", "evidence_links": []}, {"cl_id": "CL:0002394", "cl_label": "CD141-positive myeloid dendritic cell", "pr_id": "PR:000002105", "pr_label": "thrombomodulin", "cd_synonym": "CD141 (exact)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)", "quote": "DC1 corresponds to the cross-presenting CD141/BDCA-3+ cDC1, which is best marked by CLEC9A", "source_ref": "reports/literature/dc_markers.md", "evidence_links": [{"label": "reports/literature/dc_markers.md", "href": "../../literature/dc_markers.md"}]}, {"cl_id": "CL:0002399", "cl_label": "CD1c-positive myeloid dendritic cell", "pr_id": "PR:000002027", "pr_label": "T-cell surface glycoprotein CD1c", "cd_synonym": "CD1C (exact); CD1c (label)", "species_support": "human", "evidence_source": "m2_literature_report", "citation": "Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)", "quote": "DC2 and DC3 correspond to new subdivisions of the CD1C/BDCA-1+ cDC2", "source_ref": "reports/literature/dc_markers.md", "evidence_links": [{"label": "reports/literature/dc_markers.md", "href": "../../literature/dc_markers.md"}]}], "limitations": ["All mappings remain proposals; marker compatibility does not establish equivalence.", "Marker usage is extracted only from valid cells. Invalid cells can hide additional marker usage.", "Empty structured evidence fields do not mean that literature does not exist; consult the narrative.", "CL reverse view covers proposed targets, not the entire Cell Ontology.", "No upstream services were queried. Snapshot age is not proof that an ontology is outdated."], "evaluation": {"schema_version": 1, "generated_utc": "2026-09-11T04:13:49.655515+00:00", "inputs": {"data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44", "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8", "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e", "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c", "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706", "marker_policy": "317578b4b7fb1a9837b9a61fa85c2dc1ea6469eab4404b0435476ba4a12a1f84", "marker_map": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7"}, "benchmark_path": "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\matcher_benchmark.tsv", "matcher": {"version": "0.1.0", "source_hashes": {"cl_match.py": 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-const details=value=>{const d=document.createElement('details');d.append(text('summary','Details'));const visit=v=>{if(!v||typeof v!=='object')return;if(v.evidence_links){for(const link of v.evidence_links){const p=document.createElement('p'),a=text('a',link.label);a.setAttribute('href',link.href);a.rel='noopener noreferrer';p.append(a);d.append(p);}}for(const [k,child] of Object.entries(v))if(k!=='evidence_links'&&typeof child==='object')visit(child);};visit(value);d.append(text('pre',JSON.stringify(value,null,2)));return d;};
-const s=data.summary;
-const evaluation=data.evaluation||{status:'unavailable',cases:[],metrics:{}};
-el('evaluation-status').textContent='Evaluation snapshot: '+pretty(evaluation.status)+'. Target retrieval only; provisional agreement is not validated accuracy. All cases remain in the denominator, including invalid profiles and absent targets.';
-for(const cohort of ['reviewed','provisional']){const m=evaluation.metrics[cohort];const pct=n=>n==null?'unavailable':(100*n).toFixed(1)+'%';el('evaluation-metrics').append(text('p',pretty(cohort)+': '+(m?.cases??0)+' cases · top-1 '+pct(m?.hit_at_1)+' · top-3 '+pct(m?.hit_at_3)+' · top-5 '+pct(m?.hit_at_5)+' · MRR '+(m?.mrr==null?'unavailable':m.mrr.toFixed(3))));}
-if(evaluation.differences?.length)el('evaluation-metrics').append(text('p','Changed or unverified: '+evaluation.differences.join(', ')));
-if(evaluation.comparison)el('evaluation-metrics').append(details(evaluation.comparison));
-if(evaluation.config)el('evaluation-metrics').append(text('p','Candidate modes: alias/PRO '+(evaluation.config.marker_resolution?'enabled':'disabled')+' · local lexical '+(evaluation.config.local_lexical?'enabled':'disabled')+'. Mapping audit resolution mode: '+pretty(data.resolution_mode||'legacy')+'.'));
-if(evaluation.marker_resolution_issues?.length)el('evaluation-metrics').append(details({withheld_marker_resolutions:evaluation.marker_resolution_issues}));
-for(const [label,key] of [['Source rows','source_rows'],['Entities with proposals','source_entities_with_proposals'],['Entities without proposals','source_entities_without_proposals'],['Uncertain proposals','uncertain_proposals'],['Invalid profile rows','invalid_profile_rows'],['Unresolved source rows','unresolved_source_rows']]){
- const card=text('div','','card');card.append(text('div',s[key]??'—','value'),text('div',label,'label'));el('cards').append(card);
-}
-el('timestamp').textContent='Snapshot generated '+data.generated_utc;
-const errors=s.finding_severities.error||0, warnings=s.finding_severities.warning||0;
-el('notice').textContent=`${errors} error findings · ${warnings} warnings. Export input hashes: ${pretty(data.provenance.export_inputs)}. CL snapshot: ${data.provenance.ontology_snapshot_date||'date unavailable'}${data.provenance.ontology_age_days===null?'':` (${data.provenance.ontology_age_days} days old)`}. Upstream freshness has not been checked.`;
-function bars(target,counts){const entries=Object.entries(counts),total=entries.reduce((a,[,n])=>a+n,0);if(!total){el(target).append(text('p','No records available.'));return;}for(const [name,n] of entries){const row=text('div','','bar-row'),track=text('div','','track'),fill=text('div','','fill');fill.style.width=(100*n/total)+'%';track.append(fill);row.append(text('span',pretty(name)),track,text('strong',n));el(target).append(row);}}
-bars('evidence-bars',s.evidence_statuses);bars('review-bars',s.review_statuses);
-for(const item of data.limitations)el('limitations').append(text('li',item));
-const sourceStates=r=>uniq([r.mapping_status,...r.mappings.map(m=>m.evidence.status),...(r.errors.length?['invalid_profile']:[]),...(r.mappings.some(m=>m.uncertain)?['uncertain']:[])]);
-const sourceEvidence=r=>r.mappings.length?uniq(r.mappings.map(m=>m.evidence.status)):['not_assessed'];
-const views={
- evaluation:{title:'Matcher evaluation',description:'Reviewed benchmarks and provisional agreement are separate cohorts. Rank bounds show sensitivity to tied scores. Disqualified candidates retain their production ranks; expand details for contradictions and expected targets.',rows:evaluation.cases,states:r=>[r.cohort,r.status,r.match_type],columns:[['SOULCAP ID',r=>r.subject_id],['Cohort',r=>r.cohort,'badge'],['Relation',r=>r.match_type],['Expected targets',r=>r.targets.join(', ')],['Outcome',r=>r.status,'badge'],['Rank',r=>r.rank??'—'],['Tie best / worst',r=>r.rank_best==null?'—':r.rank_best+' / '+r.rank_worst],['Candidates & evidence',r=>r,'details']]},
- sources:{title:'SOULCAP review',description:'Every source row, including unresolved and unmapped rows. Expand details for original profiles, clause evidence, curator notes, and proposed relations.',rows:data.sources,states:sourceStates,columns:[['Sheet row',r=>r.sheet_row],['SOULCAP ID',r=>r.subject_id],['Cell type',r=>r.label],['Parent / specimen',r=>[r.parent,r.specimen].filter(Boolean).join(' / ')],['Proposed CL terms',r=>r.mappings.map(m=>m.cl_id+' · '+m.match_type).join('; ')||'—'],['Mapping',r=>r.mapping_status,'badge'],['Evidence',sourceEvidence,'badge'],['Sheet agreement',r=>uniq(r.mappings.map(m=>m.evidence.sheet_confirmation||'not_assessed')),'badge'],['Review',r=>uniq(r.mappings.map(m=>m.review_status)),'badge'],['Evidence & source',r=>r,'details']]},
- queue:{title:'Prioritized review queue',description:'Errors first, then warnings and missing evidence. Multiple findings may concern one cell type; these totals are not counts of distinct cells.',rows:data.findings,states:r=>[r.severity,r.code],columns:[['Severity',r=>r.severity,'badge'],['Check',r=>r.code],['Subject',r=>r.subject],['Action / observation',r=>r.message]]},
- reverse:{title:'CL reverse view',description:'CL targets of the proposed mappings. Many-to-one mappings are visible here; this is not coverage of every term in CL.',rows:data.cl_terms,states:r=>r.subject_ids.length>1?['many_to_one']:['one_subject'],columns:[['CL ID',r=>r.cl_id],['Term',r=>r.label],['SOULCAP entities',r=>r.subject_ids.length],['Subject IDs',r=>r.subject_ids.join(', ')],['Relations',r=>r.relations.join(', ')],['Mappings',r=>r.mappings,'details']]},
- markers:{title:'Marker coverage',description:'Status distinguishes documented complex/family and non-protein/reagent representations from unresolved identifiers and source artifacts. Classification follows local registry notes, not a new biological review. Missing identifiers are not automatically errors. Usage comes from valid cells only.',rows:data.markers,states:r=>[r.status,...(!r.affected_subjects.length?['no_observed_usage']:[])],columns:[['Marker',r=>r.marker_token],['Status',r=>r.status,'badge'],['Explanation',r=>r.status_reason],['PRO IDs',r=>r.pro_ids.join(', ')||'—'],['Genes',r=>r.gene_symbols.join(', ')||'—'],['NCBI Gene IDs',r=>r.ncbi_gene_ids.join(', ')||'—'],['Affected entities',r=>r.affected_subjects.length],['Mappings & usage',r=>r,'details']]},
- gaps:{title:'Gaps and issue records',description:'Issue status is read from the local gap log. Family-level descriptions and duplicated abbreviations are not automatically assigned to a single entity.',rows:data.gaps,states:r=>[r.status,r.association,r.gap_type],columns:[['SOULCAP',r=>r.soulcap_abbreviation],['Type',r=>r.gap_type],['Status',r=>r.status,'badge'],['Association',r=>r.association,'badge'],['Description',r=>r.description],['Evidence / issue',r=>r,'details']]},
- species:{title:'Species evidence',description:'Existing species-support records from the local literature audit. These records have not been reverified against publications by this dashboard.',rows:data.species_support,states:r=>[r.species_support],columns:[['CL ID',r=>r.cl_id],['CL term',r=>r.cl_label],['PRO ID',r=>r.pr_id],['Support',r=>r.species_support,'badge'],['Citation',r=>r.citation||'—'],['Evidence',r=>r,'details']]},
- inputs:{title:'Inputs and provenance',description:'Hashes identify exact local input contents. File modification times are filesystem metadata, not verification dates. Missing optional reports are shown explicitly.',rows:data.inputs,states:r=>[r.status,r.required?'required':'optional'],columns:[['Artifact',r=>r.name],['Status',r=>r.status,'badge'],['Required',r=>r.required?'yes':'no'],['Rows',r=>r.rows??'—'],['Modified UTC',r=>r.modified_utc||'—'],['Open file',r=>r,'link'],['Hash / metadata',r=>r,'details']]}
-};
-let current='sources',sortColumn=null,sortDirection=1;
-function render(){const view=views[current],query=el('search').value.toLowerCase().trim(),filter=el('filter').value;
-let rows=view.rows.filter(r=>(!query||JSON.stringify(r).toLowerCase().includes(query))&&(!filter||view.states(r).includes(filter)));
-if(sortColumn!==null){const get=view.columns[sortColumn][1];rows=[...rows].sort((a,b)=>{let x=get(a),y=get(b);return sortDirection*(typeof x==='number'&&typeof y==='number'?x-y:String(x).localeCompare(String(y),undefined,{numeric:true}));});}
-el('thead').replaceChildren();el('tbody').replaceChildren();const head=document.createElement('tr');
-view.columns.forEach(([label,get,kind],i)=>{const th=document.createElement('th');th.scope='col';if(kind==='details'||kind==='link')th.append(text('span',label));else{const button=text('button',label+(sortColumn===i?(sortDirection===1?' ↑':' ↓'):''));button.type='button';button.onclick=()=>{sortDirection=sortColumn===i?-sortDirection:1;sortColumn=i;render();};th.setAttribute('aria-sort',sortColumn===i?(sortDirection===1?'ascending':'descending'):'none');th.append(button);}head.append(th);});el('thead').append(head);
-for(const row of rows){const tr=document.createElement('tr');for(const [,get,kind] of view.columns){const td=document.createElement('td'),value=get(row);if(kind==='badge'){for(const v of arr(value))td.append(badge(v));}else if(kind==='details')td.append(details(value));else if(kind==='link'){if(value.status==='available'&&value.href){const a=text('a',value.path);a.setAttribute('href',value.href);td.append(a);}else td.textContent=value.path;}else td.textContent=value??'—';tr.append(td);}el('tbody').append(tr);}
-el('results').textContent=`${rows.length} of ${view.rows.length} records`;el('empty').hidden=rows.length>0;
-}
-function activate(key){current=key;sortColumn=null;sortDirection=1;el('search').value='';el('filter').replaceChildren(new Option('All records',''));for(const value of uniq(views[key].rows.flatMap(views[key].states)).filter(Boolean).sort())el('filter').append(new Option(pretty(value),value));el('view-title').textContent=views[key].title;el('description').textContent=views[key].description;el('caption').textContent=views[key].title+' — select a column heading to sort.';for(const b of el('tabs').children)b.setAttribute('aria-selected',String(b.dataset.key===key));render();}
-for(const [key,view] of Object.entries(views)){const b=text('button',view.title);b.type='button';b.role='tab';b.dataset.key=key;b.setAttribute('aria-controls','view');b.onclick=()=>activate(key);el('tabs').append(b);}
-el('search').addEventListener('input',render);el('filter').addEventListener('change',render);el('reset').onclick=()=>activate(current);
-activate('sources');
-</script>
-</body>
-</html>
diff --git a/reports/resolver-refinement/audit/audit_data.json b/reports/resolver-refinement/audit/audit_data.json
deleted file mode 100644
index 812e77a..0000000
--- a/reports/resolver-refinement/audit/audit_data.json
+++ /dev/null
@@ -1,151903 +0,0 @@
-{
-  "schema_version": 1,
-  "resolution_mode": "explicit_marker_policy",
-  "resolution_inputs": {
-    "marker_mappings\\marker_protein_gene.csv": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7",
-    "marker_mappings\\marker_resolution.tsv": "317578b4b7fb1a9837b9a61fa85c2dc1ea6469eab4404b0435476ba4a12a1f84"
-  },
-  "generated_utc": "2026-09-11T04:13:52.853363+00:00",
-  "summary": {
-    "registered_entities": 127,
-    "source_rows": 127,
-    "mapping_records": 80,
-    "source_entities_with_proposals": 80,
-    "source_entities_without_proposals": 47,
-    "unresolved_source_rows": 0,
-    "uncertain_proposals": 8,
-    "invalid_marker_cells": 26,
-    "invalid_profile_rows": 23,
-    "evidence_statuses": {
-      "partial_support": 54,
-      "invalid_profile": 6,
-      "no_marker_support": 20
-    },
-    "review_statuses": {
-      "needs_review": 80
-    },
-    "marker_statuses": {
-      "mapped": 55,
-      "no_gene_mapping": 3,
-      "documented_nonprotein_or_reagent": 3,
-      "documented_complex_or_family": 10,
-      "source_artifact_needs_review": 4
-    },
-    "gap_records": 17,
-    "finding_severities": {
-      "error": 23,
-      "warning": 8,
-      "info": 81
-    }
-  },
-  "sources": [
-    {
-      "subject_id": "SOULCAP:SC000001",
-      "sheet_row": 2,
-      "abbreviation": "NK",
-      "label": "Natural Killer Cell",
-      "parent": "",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD15",
-        "CD19",
-        "CD3",
-        "CD33",
-        "CD34",
-        "CD45",
-        "CD56",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "NK",
-        "Full Name": "Natural Killer Cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD34- CD3- CD19- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD123-",
-        "Required phenotypic markers": "live/ CD45+ CD56+/hi CD127-",
-        "Ideal phenotypic markers": "[CD33-|CD64-]",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000001",
-          "legacy_subject_id": "SOULCAP:NK",
-          "abbreviation": "NK",
-          "subject_label": "Natural Killer Cell",
-          "cl_id": "CL:0000623",
-          "cl_label": "natural killer cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the defining positive CD56 marker is absent — a documented CL gap (cl_term_issues.md), not confirmed here.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001889",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "True"
-                  }
-                ]
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD34:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD56:positive OR CD56:high)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "(CD33:negative OR CD64:negative)"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD20",
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "77102d43f9abced8b3efd2e11ad6d91a492bf101ebdb061a1fd67aaaa275c58c",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001289",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001889",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD14",
-                    "tokens": [
-                      "CD14"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001889",
-                    "tokens": [
-                      "CD14"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 2,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000002",
-      "sheet_row": 3,
-      "abbreviation": "NK2",
-      "label": "Natural Killer Cell 2",
-      "parent": "NK",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD3",
-        "CD33",
-        "CD34",
-        "CD45",
-        "CD56",
-        "CD57",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "NK",
-        "Abbreviation": "NK2",
-        "Full Name": "Natural Killer Cell 2",
-        "synonym": "",
-        "Type of Match": "Surface Only (SO)",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD34- CD3- CD19- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD123-",
-        "Required phenotypic markers": "live/ CD45+ CD56hi CD127- CD16-/lo CD57- ",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000002",
-          "legacy_subject_id": "SOULCAP:NK2",
-          "abbreviation": "NK2",
-          "subject_label": "Natural Killer Cell 2",
-          "cl_id": "CL:0000938",
-          "cl_label": "CD16-negative, CD56-bright natural killer cell, human",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "",
-          "note": "",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001889",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD56:high",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001024",
-                    "relation": "RO:0015015",
-                    "sense": "high",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD34:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
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-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD34:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD16:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD57:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD20",
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "6a604e667984630b654916095b7e5468c3ffd2c44e5e8cdc480cec67437b2161",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "low",
-                "pr": "PR:000001024",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001289",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001889",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD14",
-                    "tokens": [
-                      "CD14"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001889",
-                    "tokens": [
-                      "CD14"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000002015",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001483",
-                "asserted": "True",
-                "paths": []
-              }
-            ]
-          },
-          "registry_row": 6,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000006",
-      "sheet_row": 7,
-      "abbreviation": "ILCp",
-      "label": "Innate Lymphoid Cell Progenitor",
-      "parent": "",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD117",
-        "CD127",
-        "CD294",
-        "CD3",
-        "CD45",
-        "CD56"
-      ],
-      "profile": {
-        "Ready for OLS": "no",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "ILCp",
-        "Full Name": "Innate Lymphoid Cell Progenitor",
-        "synonym": "",
-        "Type of Match": "Surface Only (SO)",
-        "OLS CL identifier": "",
-        "Required exclusion": "",
-        "Ideal exclusion": "",
-        "Required phenotypic markers": "live/ CD45+ CD3- CD127+ CD56+ CD117+ CD294- ",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000006",
-          "legacy_subject_id": "SOULCAP:ILCp",
-          "abbreviation": "ILCp",
-          "subject_label": "Innate Lymphoid Cell Progenitor",
-          "cl_id": "CL:0001074",
-          "cl_label": "CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human",
-          "match_type": "Broad",
-          "uncertain": true,
-          "review_status": "needs_review",
-          "evidence_override": "",
-          "note": "SOULCAP profile does not test CD34; CL:0001073 (CD34-negative) and CL:0001082 (immature innate lymphoid cell) are equally marker-consistent alternatives, not ruled out.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD56:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001024",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD117:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000002065",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD127:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD294:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD19",
-              "CD34",
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "03443463d5f102ae603565b7efde6d5b2de1f1f9c96016ecffdf886dd673995e",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001003",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD34",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001003",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000002065",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD117",
-                    "tokens": [
-                      "CD117"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000002065",
-                    "tokens": [
-                      "CD117"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:P10721",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:P13591",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:P28906",
-                "asserted": "True",
-                "paths": []
-              }
-            ]
-          },
-          "registry_row": 7,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000007",
-      "sheet_row": 8,
-      "abbreviation": "ILC",
-      "label": "Innate Lymphoid Cell",
-      "parent": "",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD15",
-        "CD19",
-        "CD3",
-        "CD33",
-        "CD34",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "ILC",
-        "Full Name": "Innate Lymphoid Cell  ",
-        "synonym": "",
-        "Type of Match": "Surface Only (SO)",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD34- CD3- CD19- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD123-",
-        "Required phenotypic markers": "live/ CD45+ CD3- CD127+ ",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "Confirm that ILC don't bind to CD14/CD19/CD56/CD11c/CD123",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000007",
-          "legacy_subject_id": "SOULCAP:ILC",
-          "abbreviation": "ILC",
-          "subject_label": "Innate Lymphoid Cell",
-          "cl_id": "CL:0001065",
-          "cl_label": "innate lymphoid cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, not CL-marker-supported.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD19:negative",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD34:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD127:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "2382ffa8b1693854f19ee2104691b9f0a0c23f6e976b56d1c507692da08d12fc",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 8,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000008",
-      "sheet_row": 9,
-      "abbreviation": "ILC1",
-      "label": "Innate Lymphoid Cell 1",
-      "parent": "ILC",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD117",
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD15",
-        "CD19",
-        "CD294",
-        "CD3",
-        "CD33",
-        "CD34",
-        "CD45",
-        "CD56",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "no",
-        "WB or PBMC": "",
-        "Parent": "ILC",
-        "Abbreviation": "ILC1",
-        "Full Name": "Innate Lymphoid Cell 1",
-        "synonym": "",
-        "Type of Match": "Surface Only (SO)",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD34- CD3- CD19- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD123-",
-        "Required phenotypic markers": "live/ CD45+ CD3- CD127+ CD56- CD117- CD294-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000008",
-          "legacy_subject_id": "SOULCAP:ILC1",
-          "abbreviation": "ILC1",
-          "subject_label": "Innate Lymphoid Cell 1",
-          "cl_id": "CL:0001067",
-          "cl_label": "group 1 innate lymphoid cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only. No human-specific CL term exists for group 1 (unlike group 2/3); filed as CL gap, repo issue #14.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD34:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD127:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD56:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD117:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD294:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "0a749f50550a7edd93adce27f94a7302c0dbc59107a2eaae2cf44d03133a6568",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 9,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000009",
-      "sheet_row": 10,
-      "abbreviation": "ILC2",
-      "label": "Innate Lymphoid Cell 2",
-      "parent": "ILC",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD117",
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD15",
-        "CD19",
-        "CD294",
-        "CD3",
-        "CD33",
-        "CD34",
-        "CD45",
-        "CD56",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "no",
-        "WB or PBMC": "",
-        "Parent": "ILC",
-        "Abbreviation": "ILC2",
-        "Full Name": "Innate Lymphoid Cell 2",
-        "synonym": "",
-        "Type of Match": "Surface Only (SO)",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD34- CD3- CD19- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD123-",
-        "Required phenotypic markers": "live/ CD45+ CD3- CD127+ CD56- CD117lo/- CD294+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000009",
-          "legacy_subject_id": "SOULCAP:ILC2",
-          "abbreviation": "ILC2",
-          "subject_label": "Innate Lymphoid Cell 2",
-          "cl_id": "CL:0001081",
-          "cl_label": "group 2 innate lymphoid cell, human",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had picked the wrong-species term.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD127:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001869",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD294:positive",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:Q9Y5Y4",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD34:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD56:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD117:low OR CD117:negative)"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD161",
-              "CD25",
-              "CD3E",
-              "CDW127"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "735345c450434e1f351231103ee6c81f7e0ba186fb9ce20230642a95b44c7a23",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001380",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD25",
-                    "tokens": [
-                      "CD25"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001380",
-                    "tokens": [
-                      "CD25"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001869",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD127",
-                    "tokens": [
-                      "CD127"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW127",
-                    "tokens": [
-                      "CDW127"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001869",
-                    "tokens": [
-                      "CD127"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001874",
-                "asserted": "False",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001941",
-                "asserted": "False",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:P01589",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:P16871",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW127",
-                    "tokens": [
-                      "CDW127"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:P23771",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:Q12918",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD161",
-                    "tokens": [
-                      "CD161"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:Q12918",
-                    "tokens": [
-                      "CD161"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:Q9Y5Y4",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD294",
-                    "tokens": [
-                      "CD294"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:Q9Y5Y4",
-                    "tokens": [
-                      "CD294"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 10,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000010",
-      "sheet_row": 11,
-      "abbreviation": "ILC3",
-      "label": "Innate Lymphoid Cell 3",
-      "parent": "ILC",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD117",
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD15",
-        "CD19",
-        "CD294",
-        "CD3",
-        "CD33",
-        "CD34",
-        "CD45",
-        "CD56",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "no",
-        "WB or PBMC": "",
-        "Parent": "ILC",
-        "Abbreviation": "ILC3",
-        "Full Name": "Innate Lymphoid Cell 3",
-        "synonym": "",
-        "Type of Match": "Surface Only (SO)",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD34- CD3- CD19- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD123-",
-        "Required phenotypic markers": "live/ CD45+ CD3- CD127+ CD56+/- CD117+ CD294- ",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "No ILC3b in circulation, add CD336 for tissue",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000010",
-          "legacy_subject_id": "SOULCAP:ILC3",
-          "abbreviation": "ILC3",
-          "subject_label": "Innate Lymphoid Cell 3",
-          "cl_id": "CL:0001078",
-          "cl_label": "group 3 innate lymphoid cell, human",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had over-specified to an NKp44+ subtype.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD127:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001869",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD34:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD56:low OR CD56:negative)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD117:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD294:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD3E",
-              "CDW127"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "60bbd7b2b4b6bd74a25764ca423e651165008b0e6d59552268caf45876ec18f8",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001869",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD127",
-                    "tokens": [
-                      "CD127"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW127",
-                    "tokens": [
-                      "CDW127"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001869",
-                    "tokens": [
-                      "CD127"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000003455",
-                "asserted": "False",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:P16871",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW127",
-                    "tokens": [
-                      "CDW127"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 11,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000011",
-      "sheet_row": 12,
-      "abbreviation": "cDC",
-      "label": "Conventional Dendritic Cell",
-      "parent": "",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD16",
-        "CD19",
-        "CD193",
-        "CD3",
-        "CD303",
-        "CD33",
-        "CD45",
-        "CD56",
-        "CD64",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "cDC",
-        "Full Name": "Conventional Dendritic Cell",
-        "synonym": "DCM, Myeloid Dendritic Cells, mDC",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "([CD123hi]-|CD193-) ([CD123hi]-|CD303-) CD14- CD16-",
-        "Ideal exclusion": "CD3- CD19- CD56- CD127- ",
-        "Required phenotypic markers": "live/ CD45+ (CD33hi|CD64+) CD11chi HLA-DR+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000011",
-          "legacy_subject_id": "SOULCAP:cDC",
-          "abbreviation": "cDC",
-          "subject_label": "Conventional Dendritic Cell",
-          "cl_id": "CL:0000990",
-          "cl_label": "conventional dendritic cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD56:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001024",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD11C:high",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001013",
-                    "relation": "RO:0015015",
-                    "sense": "high",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD123:not:high OR CD193:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD123:not:high OR CD303:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD14:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD33:high OR CD64:positive)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "HLA-DR:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD11",
-              "CD20",
-              "CD34",
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "334dd74448fec5173d10655dacd2b628cd103b346f3c6a7b37b061edc4ac9fa6",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "high",
-                "pr": "PR:000001013",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11",
-                    "tokens": [
-                      "CD11"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11C",
-                    "tokens": [
-                      "CD11C"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001013",
-                    "tokens": [
-                      "CD11C"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001003",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD34",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001003",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001289",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 12,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000012",
-      "sheet_row": 13,
-      "abbreviation": "cDC1",
-      "label": "Conventional Dendritic Cell 1",
-      "parent": "DCM",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD141",
-        "CD16",
-        "CD172a",
-        "CD19",
-        "CD193",
-        "CD1c",
-        "CD3",
-        "CD303",
-        "CD33",
-        "CD45",
-        "CD56",
-        "CD64",
-        "FceR1a",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "DCM",
-        "Abbreviation": "cDC1",
-        "Full Name": "Conventional Dendritic Cell 1",
-        "synonym": "mDC1",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "([CD123hi]-|CD193-) ([CD123hi]-|CD303-) CD14- CD16-",
-        "Ideal exclusion": "CD3- CD19- CD56- CD127- ",
-        "Required phenotypic markers": "live/ CD45+ (CD33hi|CD64+) CD11chi HLA-DR+ CD1c- CD141+",
-        "Ideal phenotypic markers": "CD172a- FceR1a-",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000012",
-          "legacy_subject_id": "SOULCAP:cDC1",
-          "abbreviation": "cDC1",
-          "subject_label": "Conventional Dendritic Cell 1",
-          "cl_id": "CL:0002394",
-          "cl_label": "CD141-positive myeloid dendritic cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had wrongly assigned cDC1 the same term as cDC2.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD123:not:high OR CD193:negative)",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001865",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD123:not:high OR CD303:negative)",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001865",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD56:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001024",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD11C:high",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001013",
-                    "relation": "RO:0015015",
-                    "sense": "high",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD141:positive",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000002105",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD14:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD33:high OR CD64:positive)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "HLA-DR:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD1C:negative"
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "CD172A:negative"
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "FCER1A:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD11",
-              "CD20",
-              "CD34",
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "26b00ac7a3eecc08344c5062dce97e2ccfd3a591c8a347be9f155b32e0128b25",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "high",
-                "pr": "PR:000001013",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11",
-                    "tokens": [
-                      "CD11"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11C",
-                    "tokens": [
-                      "CD11C"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001013",
-                    "tokens": [
-                      "CD11C"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001003",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD34",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001003",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001289",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001865",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD123",
-                    "tokens": [
-                      "CD123"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001865",
-                    "tokens": [
-                      "CD123"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000002105",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD141",
-                    "tokens": [
-                      "CD141"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000002105",
-                    "tokens": [
-                      "CD141"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 13,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000013",
-      "sheet_row": 14,
-      "abbreviation": "cDC2",
-      "label": "Conventional Dendritic Cell 2",
-      "parent": "DCM",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD141",
-        "CD16",
-        "CD172a",
-        "CD19",
-        "CD193",
-        "CD1c",
-        "CD3",
-        "CD303",
-        "CD33",
-        "CD45",
-        "CD56",
-        "CD64",
-        "FceR1a",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "DCM",
-        "Abbreviation": "cDC2",
-        "Full Name": "Conventional Dendritic Cell 2",
-        "synonym": "mDC2",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "([CD123hi]-|CD193-) ([CD123hi]-|CD303-) CD14- CD16-",
-        "Ideal exclusion": "CD3- CD19- CD56- CD127- ",
-        "Required phenotypic markers": "live/ CD45+ (CD33hi|CD64+) CD11chi HLA-DR+ CD1c+ CD141lo/-",
-        "Ideal phenotypic markers": "CD172a+ FceR1a+/-",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000013",
-          "legacy_subject_id": "SOULCAP:cDC2",
-          "abbreviation": "cDC2",
-          "subject_label": "Conventional Dendritic Cell 2",
-          "cl_id": "CL:0002399",
-          "cl_label": "CD1c-positive myeloid dendritic cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed correct by cross-check against cDC1.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD123:not:high OR CD193:negative)",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001865",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD123:not:high OR CD303:negative)",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001865",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD56:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001024",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD11C:high",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001013",
-                    "relation": "RO:0015015",
-                    "sense": "high",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD1C:positive",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000002027",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD14:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD33:high OR CD64:positive)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "HLA-DR:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD141:low OR CD141:negative)"
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "CD172A:positive"
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "(FCER1A:low OR FCER1A:negative)"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD11",
-              "CD20",
-              "CD34",
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "3e6dc30f6e3ac086a6d06bc8b78c27895cba0f8f343c29a212dd2cb02d6dddee",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "high",
-                "pr": "PR:000001013",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11",
-                    "tokens": [
-                      "CD11"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11C",
-                    "tokens": [
-                      "CD11C"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001013",
-                    "tokens": [
-                      "CD11C"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001003",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD34",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001003",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001289",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001865",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD123",
-                    "tokens": [
-                      "CD123"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001865",
-                    "tokens": [
-                      "CD123"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000002027",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD1C",
-                    "tokens": [
-                      "CD1C"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD1C",
-                    "tokens": [
-                      "CD1C"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000002027",
-                    "tokens": [
-                      "CD1C"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 14,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000014",
-      "sheet_row": 15,
-      "abbreviation": "pDC",
-      "label": "Peripheral Dendritic Cell",
-      "parent": "",
-      "specimen": "PBMC",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD193",
-        "CD3",
-        "CD303",
-        "CD33",
-        "CD45",
-        "CD56",
-        "CD66b",
-        "FceR1a"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "PBMC",
-        "Parent": "",
-        "Abbreviation": "pDC",
-        "Full Name": "Peripheral Dendritic Cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "CD3-",
-        "Ideal exclusion": "CD56- CD19- CD127- (CD15-|CD66b-) CD14- CD16- ",
-        "Required phenotypic markers": "live/ CD45+ (CD33lo/+|CD123hi) (CD193-|FceR1a-|CD303+)",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000014",
-          "legacy_subject_id": "SOULCAP:pDC",
-          "abbreviation": "pDC",
-          "subject_label": "Plasmacytoid Dendritic Cell",
-          "cl_id": "CL:0001058",
-          "cl_label": "plasmacytoid dendritic cell, human",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only. Sheet's Full Name reads 'Peripheral Dendritic Cell' (likely a typo for 'Plasmacytoid'); not yet corrected at source.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD56:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001024",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD14:negative",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001889",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD33:low OR CD33:positive OR CD123:high)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD193:negative OR FCER1A:negative OR CD303:positive)"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD11",
-              "CD11C",
-              "CD20",
-              "CD34",
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "90a3916e208c3f3f041f7567896fcd45d341337251da243d921d8127b8562d71",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001003",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD34",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001003",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001013",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11",
-                    "tokens": [
-                      "CD11"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11C",
-                    "tokens": [
-                      "CD11C"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001013",
-                    "tokens": [
-                      "CD11C"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001289",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001889",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD14",
-                    "tokens": [
-                      "CD14"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001889",
-                    "tokens": [
-                      "CD14"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001865",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD123",
-                    "tokens": [
-                      "CD123"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001865",
-                    "tokens": [
-                      "CD123"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000002015",
-                "asserted": "False",
-                "paths": []
-              }
-            ]
-          },
-          "registry_row": 15,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000015",
-      "sheet_row": 16,
-      "abbreviation": "Basophil",
-      "label": "Basophil",
-      "parent": "",
-      "specimen": "PBMC",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD193",
-        "CD3",
-        "CD303",
-        "CD33",
-        "CD45",
-        "CD56",
-        "CD66b",
-        "FceR1a",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "PBMC",
-        "Parent": "",
-        "Abbreviation": "Basophil",
-        "Full Name": "Basophil",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "CD3-",
-        "Ideal exclusion": "CD56- CD19- CD127- (CD15-|CD66b-) CD14- CD16- ",
-        "Required phenotypic markers": "live/ CD45+ (CD33+|CD123+) (CD193+|FceR1a+|HLA-DR-|CD303-)",
-        "Ideal phenotypic markers": "FceR1a+ HLA-DR-  ",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000015",
-          "legacy_subject_id": "SOULCAP:Basophil_(PBMC)",
-          "abbreviation": "Basophil (PBMC)",
-          "subject_label": "Basophil",
-          "cl_id": "CL:0000043",
-          "cl_label": "mature basophil",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "",
-          "note": "",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD56:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001024",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD33:positive OR CD123:positive)",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001865",
-                    "relation": "RO:0015015",
-                    "sense": "high",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD193:positive OR FCER1A:positive OR HLA-DR:negative OR CD303:negative)",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001255",
-                    "relation": "RO:0015015",
-                    "sense": "high",
-                    "asserted": "False"
-                  },
-                  {
-                    "pr": "PR:000007431",
-                    "relation": "RO:0015015",
-                    "sense": "high",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "FCER1A:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000007431",
-                    "relation": "RO:0015015",
-                    "sense": "high",
-                    "asserted": "False"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD14:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "HLA-DR:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD11",
-              "CD11B",
-              "CD154",
-              "CD203C",
-              "CD3E",
-              "CD40",
-              "CD40LG",
-              "CD67",
-              "CD87",
-              "CD8A"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "6ae772d0622c8988d15f047ef4570ab309a99edce893328ef9c815aec7e0c1b3",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "high",
-                "pr": "PR:000001255",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD193",
-                    "tokens": [
-                      "CD193"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001255",
-                    "tokens": [
-                      "CD193"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "high",
-                "pr": "PR:000001865",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD123",
-                    "tokens": [
-                      "CD123"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001865",
-                    "tokens": [
-                      "CD123"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "high",
-                "pr": "PR:000007431",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000007431",
-                    "tokens": [
-                      "FCER1A"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001084",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001012",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11",
-                    "tokens": [
-                      "CD11"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11B",
-                    "tokens": [
-                      "CD11B"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001332",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD66B",
-                    "tokens": [
-                      "CD66B"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD67",
-                    "tokens": [
-                      "CD67"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001332",
-                    "tokens": [
-                      "CD66B"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001344",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD203C",
-                    "tokens": [
-                      "CD203C"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001950",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD154",
-                    "tokens": [
-                      "CD154"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD40",
-                    "tokens": [
-                      "CD40"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD40LG",
-                    "tokens": [
-                      "CD40LG"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001969",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD87",
-                    "tokens": [
-                      "CD87"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 16,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000016",
-      "sheet_row": 17,
-      "abbreviation": "Basophil",
-      "label": "Basophil",
-      "parent": "",
-      "specimen": "WB",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD123",
-        "CD127",
-        "CD15",
-        "CD19",
-        "CD193",
-        "CD3",
-        "CD45",
-        "CD56",
-        "CD66b"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "WB",
-        "Parent": "",
-        "Abbreviation": "Basophil",
-        "Full Name": "Basophil",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "CD3- (CD15-|CD66b-)",
-        "Ideal exclusion": "CD56- CD19- CD127- ",
-        "Required phenotypic markers": "live/ CD45+ CD193+ CD123+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000016",
-          "legacy_subject_id": "SOULCAP:Basophil_(WB)",
-          "abbreviation": "Basophil (WB)",
-          "subject_label": "Basophil",
-          "cl_id": "CL:0000043",
-          "cl_label": "mature basophil",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "",
-          "note": "",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD56:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001024",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD193:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001255",
-                    "relation": "RO:0015015",
-                    "sense": "high",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD123:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001865",
-                    "relation": "RO:0015015",
-                    "sense": "high",
-                    "asserted": "False"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD11",
-              "CD11B",
-              "CD154",
-              "CD203C",
-              "CD3E",
-              "CD40",
-              "CD40LG",
-              "CD67",
-              "CD87",
-              "CD8A",
-              "FCER1A"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "b5e758e040d00ac23abae3ebc35dddae9abe67be32d404eb68c7345159c4132c",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "high",
-                "pr": "PR:000001255",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD193",
-                    "tokens": [
-                      "CD193"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001255",
-                    "tokens": [
-                      "CD193"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "high",
-                "pr": "PR:000001865",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD123",
-                    "tokens": [
-                      "CD123"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001865",
-                    "tokens": [
-                      "CD123"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "high",
-                "pr": "PR:000007431",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000007431",
-                    "tokens": [
-                      "FCER1A"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001084",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001012",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11",
-                    "tokens": [
-                      "CD11"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11B",
-                    "tokens": [
-                      "CD11B"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001332",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD66B",
-                    "tokens": [
-                      "CD66B"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD67",
-                    "tokens": [
-                      "CD67"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001332",
-                    "tokens": [
-                      "CD66B"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001344",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD203C",
-                    "tokens": [
-                      "CD203C"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001950",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD154",
-                    "tokens": [
-                      "CD154"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD40",
-                    "tokens": [
-                      "CD40"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD40LG",
-                    "tokens": [
-                      "CD40LG"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001969",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD87",
-                    "tokens": [
-                      "CD87"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 17,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000017",
-      "sheet_row": 18,
-      "abbreviation": "Mono",
-      "label": "Monocyte",
-      "parent": "",
-      "specimen": "WB and PBMC",
-      "errors": [
-        {
-          "column": "Required exclusion",
-          "expression": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)",
-          "error": "unexpected ')' in group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD14",
-        "CD15",
-        "CD3",
-        "CD33",
-        "CD45",
-        "CD64",
-        "CD66b"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "WB and PBMC",
-        "Parent": "",
-        "Abbreviation": "Mono",
-        "Full Name": "Monocyte",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "CL:0000576",
-        "Required exclusion": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)",
-        "Ideal exclusion": "[CD15hi|CD66b+]- CD3-",
-        "Required phenotypic markers": "live/ CD45+ CD14+/- CD11c+/-",
-        "Ideal phenotypic markers": "(CD64+/-|CD33+)",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000017",
-          "legacy_subject_id": "SOULCAP:Mono",
-          "abbreviation": "Mono",
-          "subject_label": "Monocyte",
-          "cl_id": "CL:0000576",
-          "cl_label": "monocyte",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "sheet_confirmed",
-          "note": "OAK-verified exact label match (OLS4 was timing out); CL:0000576 has no marker axioms recorded at all. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-          "evidence": {
-            "status": "invalid_profile",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [
-              "Required exclusion: unexpected ')' in group"
-            ],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "84c375696035c6d7c9de16751255259e8e834ac9287f201f13ed821a7bfdda5d",
-            "sheet_cl_id": "CL:0000576",
-            "sheet_confirmation": "agrees",
-            "sheet_notes": ""
-          },
-          "registry_row": 18,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000018",
-      "sheet_row": 19,
-      "abbreviation": "CMo",
-      "label": "Classical Monocyte",
-      "parent": "Mono",
-      "specimen": "WB and PBMC",
-      "errors": [
-        {
-          "column": "Required exclusion",
-          "expression": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)",
-          "error": "unexpected ')' in group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD3",
-        "CD33",
-        "CD45",
-        "CD64",
-        "CD66b"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "WB and PBMC",
-        "Parent": "Mono",
-        "Abbreviation": "CMo",
-        "Full Name": "Classical Monocyte",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "CL:0000860",
-        "Required exclusion": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)",
-        "Ideal exclusion": "[CD15hi|CD66b+]- CD3- ",
-        "Required phenotypic markers": "live/ CD45+ CD14+ CD16-",
-        "Ideal phenotypic markers": "(CD64+|CD33+)",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000018",
-          "legacy_subject_id": "SOULCAP:CMo",
-          "abbreviation": "CMo",
-          "subject_label": "Classical Monocyte",
-          "cl_id": "CL:0000860",
-          "cl_label": "classical monocyte",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "sheet_confirmed",
-          "note": "OAK-verified exact label match. CL:0000860 asserts only CCR2 (CD192) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-          "evidence": {
-            "status": "invalid_profile",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [
-              "Required exclusion: unexpected ')' in group"
-            ],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "4c9436c977492d1ccea66ec05a22925897e6235162061f41dbf8e4e09ac940e3",
-            "sheet_cl_id": "CL:0000860",
-            "sheet_confirmation": "agrees",
-            "sheet_notes": ""
-          },
-          "registry_row": 19,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000019",
-      "sheet_row": 20,
-      "abbreviation": "NCMo",
-      "label": "Non-classical Monocyte",
-      "parent": "Mono",
-      "specimen": "WB and PBMC",
-      "errors": [
-        {
-          "column": "Required exclusion",
-          "expression": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)",
-          "error": "unexpected ')' in group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD3",
-        "CD33",
-        "CD45",
-        "CD64",
-        "CD66b"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "WB and PBMC",
-        "Parent": "Mono",
-        "Abbreviation": "NCMo",
-        "Full Name": "Non-classical Monocyte",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "CL:0000875",
-        "Required exclusion": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)",
-        "Ideal exclusion": "[CD15hi|CD66b+]- CD3-  ",
-        "Required phenotypic markers": "live/ CD45+ CD14lo/- CD16+ ",
-        "Ideal phenotypic markers": "(CD64+/-|CD33+)",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000019",
-          "legacy_subject_id": "SOULCAP:NCMo",
-          "abbreviation": "NCMo",
-          "subject_label": "Non-classical Monocyte",
-          "cl_id": "CL:0000875",
-          "cl_label": "non-classical monocyte",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "sheet_confirmed",
-          "note": "OAK-verified exact label match. CL:0000875 asserts only CX3CR1 and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-          "evidence": {
-            "status": "invalid_profile",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [
-              "Required exclusion: unexpected ')' in group"
-            ],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "2ccb34f2fc50e1126131986d487fe42c67bdcacc16330874b67750b017cbeab0",
-            "sheet_cl_id": "CL:0000875",
-            "sheet_confirmation": "agrees",
-            "sheet_notes": ""
-          },
-          "registry_row": 20,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000020",
-      "sheet_row": 21,
-      "abbreviation": "IntMo",
-      "label": "Intermediate Monocyte",
-      "parent": "Mono",
-      "specimen": "WB and PBMC",
-      "errors": [
-        {
-          "column": "Required exclusion",
-          "expression": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)",
-          "error": "unexpected ')' in group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD3",
-        "CD33",
-        "CD45",
-        "CD64",
-        "CD66b"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "WB and PBMC",
-        "Parent": "Mono",
-        "Abbreviation": "IntMo",
-        "Full Name": "Intermediate Monocyte",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "CL:0002393",
-        "Required exclusion": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)",
-        "Ideal exclusion": "[CD15hi|CD66b+]- CD3- ",
-        "Required phenotypic markers": "live/ CD45+ CD14+ CD16hi ",
-        "Ideal phenotypic markers": "(CD64+|CD33+)",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000020",
-          "legacy_subject_id": "SOULCAP:IntMo",
-          "abbreviation": "IntMo",
-          "subject_label": "Intermediate Monocyte",
-          "cl_id": "CL:0002393",
-          "cl_label": "intermediate monocyte",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "sheet_confirmed",
-          "note": "OAK-verified exact label match. CL:0002393 asserts only CCR2 (CD192, negative) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-          "evidence": {
-            "status": "invalid_profile",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [
-              "Required exclusion: unexpected ')' in group"
-            ],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "aa79f8b8798d9b79b35cd87edef7133ca5b824636f3f05d0dfe1b990d87d97c3",
-            "sheet_cl_id": "CL:0002393",
-            "sheet_confirmation": "agrees",
-            "sheet_notes": ""
-          },
-          "registry_row": 21,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000021",
-      "sheet_row": 22,
-      "abbreviation": "Neut",
-      "label": "Neutrophil",
-      "parent": "",
-      "specimen": "WB and PBMC",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD193",
-        "CD3",
-        "CD33",
-        "CD45",
-        "CD56",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "WB and PBMC",
-        "Parent": "",
-        "Abbreviation": "Neut",
-        "Full Name": "Neutrophil",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "CD3- CD56- CD14lo/- CD123-",
-        "Ideal exclusion": "CD19- [HLA-DR+ CD11chi]-",
-        "Required phenotypic markers": "live/ CD45+ (CD15hi|CD66b+) CD193- CD16hi",
-        "Ideal phenotypic markers": "(CD64-|CD33+)",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000021",
-          "legacy_subject_id": "SOULCAP:Neutrophil",
-          "abbreviation": "Neutrophil",
-          "subject_label": "Neutrophil",
-          "cl_id": "CL:0000775",
-          "cl_label": "neutrophil",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "",
-          "note": "",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD56:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001024",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD15:high OR CD66B:positive)",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001332",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:low OR CD14:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD193:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD16:high"
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "(CD64:negative OR CD33:positive)"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD11",
-              "CD11B",
-              "CD3E",
-              "CD67",
-              "CD87",
-              "CD8A"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "6a7f385e7dd5e22ba96aeedb4aa46fb2e6ab411bc046567fac5d0aeb3ea7f587",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001084",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001012",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11",
-                    "tokens": [
-                      "CD11"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11B",
-                    "tokens": [
-                      "CD11B"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001332",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD66B",
-                    "tokens": [
-                      "CD66B"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD67",
-                    "tokens": [
-                      "CD67"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001332",
-                    "tokens": [
-                      "CD66B"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001479",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001879",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001969",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD87",
-                    "tokens": [
-                      "CD87"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 22,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000022",
-      "sheet_row": 23,
-      "abbreviation": "Eos",
-      "label": "Eosinophil",
-      "parent": "",
-      "specimen": "WB",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD193",
-        "CD3",
-        "CD33",
-        "CD45",
-        "CD56",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "WB",
-        "Parent": "",
-        "Abbreviation": "Eos",
-        "Full Name": "Eosinophil",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "CD3- CD56- CD14lo/- CD123-",
-        "Ideal exclusion": "CD19- [HLA-DR+ CD11chi]-",
-        "Required phenotypic markers": "live/ CD45+ (CD15hi|CD66b+) CD193+ CD16- ",
-        "Ideal phenotypic markers": "(CD64-|CD33+)",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000022",
-          "legacy_subject_id": "SOULCAP:Eosinophil",
-          "abbreviation": "Eosinophil",
-          "subject_label": "Eosinophil",
-          "cl_id": "CL:0000771",
-          "cl_label": "eosinophil",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "",
-          "note": "CD193 (CCR3) positive is directly asserted (not inferred) on CL:0000771, precisely matching SOULCAP's defining CD193+ requirement — one of the stronger marker-confirmed matches in this set.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD56:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001024",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD15:high OR CD66B:positive)",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001332",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD193:positive",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001255",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:low OR CD14:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "(CD64:negative OR CD33:positive)"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD11",
-              "CD11B",
-              "CD191",
-              "CD3E",
-              "CD44",
-              "CD67",
-              "CD69",
-              "CD87",
-              "CD8A",
-              "CD9",
-              "CDW44"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "874205816800964db5c591f96652bdac9d28acef6907b20275b346c4e2cc3524",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001084",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001012",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11",
-                    "tokens": [
-                      "CD11"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11B",
-                    "tokens": [
-                      "CD11B"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001254",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD191",
-                    "tokens": [
-                      "CD191"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001255",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD193",
-                    "tokens": [
-                      "CD193"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001255",
-                    "tokens": [
-                      "CD193"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001307",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD44",
-                    "tokens": [
-                      "CD44"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW44",
-                    "tokens": [
-                      "CDW44"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001332",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD66B",
-                    "tokens": [
-                      "CD66B"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD67",
-                    "tokens": [
-                      "CD67"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001332",
-                    "tokens": [
-                      "CD66B"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001343",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD69",
-                    "tokens": [
-                      "CD69"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001969",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD87",
-                    "tokens": [
-                      "CD87"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000005178",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD9",
-                    "tokens": [
-                      "CD9"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 23,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000023",
-      "sheet_row": 24,
-      "abbreviation": "B cell",
-      "label": "B cell",
-      "parent": "",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD45",
-        "CD56",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "B cell",
-        "Full Name": "B cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+)",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000023",
-          "legacy_subject_id": "SOULCAP:B_cell",
-          "abbreviation": "B cell",
-          "subject_label": "B cell",
-          "cl_id": "CL:0000236",
-          "cl_label": "B cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OLS4 REST search returned zero hits for this exact query; found instead via OAK. CL:0000236 has no marker axioms recorded.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD56:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD20:positive OR CD19:positive)"
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "CD20:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "a0300906ff3acd98f58b8ebb9443d973b9710447d8ab4736aa111ae172b1df78",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 24,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000024",
-      "sheet_row": 25,
-      "abbreviation": "ASC",
-      "label": "Antibody Secreting Cell",
-      "parent": "",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD27",
-        "CD3",
-        "CD33",
-        "CD38",
-        "CD45",
-        "CD56",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "ASC",
-        "Full Name": "Antibody Secreting Cell",
-        "synonym": "",
-        "Type of Match": "Surface Only (SO)",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ CD19+ CD27+/hi CD38hi ",
-        "Ideal phenotypic markers": "CD20+/-",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000024",
-          "legacy_subject_id": "SOULCAP:ASC",
-          "abbreviation": "ASC",
-          "subject_label": "Antibody Secreting Cell",
-          "cl_id": "CL:0000946",
-          "cl_label": "antibody secreting cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Lexical match; marker scoring found nothing useful (mouse B220-nomenclature terms scored highest instead).",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD56:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD19:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD27:positive OR CD27:high)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD38:high"
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "(CD20:low OR CD20:negative)"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "a80b760b7494b5ccacbfeb5822368766f2b27665ee08fea9e8e1f9c303a76c79",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 25,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000025",
-      "sheet_row": 26,
-      "abbreviation": "PB",
-      "label": "Plasmablast",
-      "parent": "ASC",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD138",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD27",
-        "CD3",
-        "CD33",
-        "CD38",
-        "CD45",
-        "CD56",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "ASC",
-        "Abbreviation": "PB",
-        "Full Name": "Plasmablast",
-        "synonym": "",
-        "Type of Match": "Surface Only (SO)",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ CD19+ CD27+/hi CD38hi CD138-",
-        "Ideal phenotypic markers": "CD20+/-",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000025",
-          "legacy_subject_id": "SOULCAP:PB",
-          "abbreviation": "PB",
-          "subject_label": "Plasmablast",
-          "cl_id": "CL:0000980",
-          "cl_label": "plasmablast",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Lexical match; marker scoring found nothing useful.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD19:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD27:positive OR CD27:high)",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001963",
-                    "relation": "RO:0015015",
-                    "sense": "high",
-                    "asserted": "True"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD38:high",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001408",
-                    "relation": "RO:0015015",
-                    "sense": "high",
-                    "asserted": "True"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD138:negative",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001935",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "True"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "(CD20:low OR CD20:negative)",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001289",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD56:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD27L",
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "9863d8716862be947cf0fcd9d032cfb66cc1eb2aa59415522dc05bae36ac21f0",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "high",
-                "pr": "PR:000001408",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD38",
-                    "tokens": [
-                      "CD38"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001408",
-                    "tokens": [
-                      "CD38"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "high",
-                "pr": "PR:000001963",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD27",
-                    "tokens": [
-                      "CD27"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD27L",
-                    "tokens": [
-                      "CD27L"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001963",
-                    "tokens": [
-                      "CD27"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001289",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001935",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD138",
-                    "tokens": [
-                      "CD138"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001935",
-                    "tokens": [
-                      "CD138"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 26,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000026",
-      "sheet_row": 27,
-      "abbreviation": "PC",
-      "label": "Plasma Cell",
-      "parent": "ASC",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD138",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD27",
-        "CD3",
-        "CD33",
-        "CD38",
-        "CD45",
-        "CD56",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "ASC",
-        "Abbreviation": "PC",
-        "Full Name": "Plasma Cell",
-        "synonym": "",
-        "Type of Match": "Surface Only (SO)",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ CD19+ CD27+/hi CD38hi CD138+",
-        "Ideal phenotypic markers": "CD20-",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000026",
-          "legacy_subject_id": "SOULCAP:PC",
-          "abbreviation": "PC",
-          "subject_label": "Plasma Cell",
-          "cl_id": "CL:0000786",
-          "cl_label": "plasma cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Lexical match; marker scoring found nothing useful.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD138:positive",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001935",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "True"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "CD20:negative",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001289",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD56:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD19:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD27:positive OR CD27:high)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD38:high"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "6e574209001a2ef071b4ee9221b9c2ac7c15348cb319df7b0eab050ed1ce33d4",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001289",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001935",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD138",
-                    "tokens": [
-                      "CD138"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001935",
-                    "tokens": [
-                      "CD138"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 27,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000027",
-      "sheet_row": 28,
-      "abbreviation": "Transitional",
-      "label": "Transitional B cell",
-      "parent": "",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [],
-      "profile": {
-        "Ready for OLS": "no",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "Transitional",
-        "Full Name": "Transitional B cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "",
-        "Ideal exclusion": "",
-        "Required phenotypic markers": "",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000028",
-      "sheet_row": 29,
-      "abbreviation": "T1/T2 B",
-      "label": "Transitonal B cell 1 and 2",
-      "parent": "",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD10",
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD24",
-        "CD27",
-        "CD3",
-        "CD33",
-        "CD38",
-        "CD45",
-        "CD56",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "no",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "T1/T2 B ",
-        "Full Name": "Transitonal B cell 1 and 2",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+) CD27- (CD38hi|CD10hi) CD24hi ",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000028",
-          "legacy_subject_id": "SOULCAP:T1/T2_B",
-          "abbreviation": "T1/T2 B",
-          "subject_label": "Transitonal B cell 1 and 2",
-          "cl_id": "CL:0000818",
-          "cl_label": "transitional stage B cell",
-          "match_type": "Broad",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "SOULCAP combines T1+T2 into one gate; CL keeps CL:0000958 (T1) and CL:0000959 (T2) separate under this parent term. Sheet's Full Name has a typo ('Transitonal').",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD20:positive OR CD19:positive)",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  },
-                  {
-                    "pr": "PR:000001289",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "True"
-                  }
-                ]
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-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
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-              {
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-                "clause": "CD123:negative"
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-              {
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-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD38:low OR CD38:negative OR CD10:negative)"
-              },
-              {
-                "column": "Required phenotypic markers",
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-              {
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-              "CD3E"
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-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
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-                    "source_token": "CD27L",
-                    "tokens": [
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-                "sense": "positive",
-                "pr": "PR:000001002",
-                "asserted": "False",
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-                    "source_token": "CD19",
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-                "pr": "PR:000001289",
-                "asserted": "True",
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-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
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-              }
-            ]
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-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000032",
-      "sheet_row": 33,
-      "abbreviation": "BDN",
-      "label": "Double Negative B cells",
-      "parent": "Mature B",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD10",
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD24",
-        "CD27",
-        "CD3",
-        "CD33",
-        "CD38",
-        "CD45",
-        "CD56",
-        "CD64",
-        "CD66b",
-        "HLA-DR",
-        "IgD"
-      ],
-      "profile": {
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-        "WB or PBMC": "",
-        "Parent": "Mature B",
-        "Abbreviation": "BDN",
-        "Full Name": "Double Negative B cells",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
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-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
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-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000032",
-          "legacy_subject_id": "SOULCAP:BDN",
-          "abbreviation": "BDN",
-          "subject_label": "Double Negative B cells",
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-          "cl_label": "double negative memory B cell",
-          "match_type": "Exact",
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-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified; batch lexical search had wrongly picked CL:0002103, an IgG-positive-specific child term.",
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-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
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-          "evidence": {
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-                "column": "Required phenotypic markers",
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-                    "sense": "positive",
-                    "asserted": "False"
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-                "clause": "CD27:negative",
-                "assertion": "direct",
-                "axioms": [
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-                    "sense": "negative",
-                    "asserted": "True"
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-              {
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-                "axioms": [
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-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
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-                "column": "Required exclusion",
-                "clause": "CD3:negative"
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-              {
-                "column": "Required exclusion",
-                "clause": "CD56:negative"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
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-              {
-                "column": "Ideal exclusion",
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-              {
-                "column": "Required phenotypic markers",
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-                "asserted": "False",
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-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001289",
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-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
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-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
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-            ]
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-          "registry_row": 32,
-          "evidence_links": [
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-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
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-          ]
-        }
-      ],
-      "mapping_status": "proposed"
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-    {
-      "subject_id": "SOULCAP:SC000033",
-      "sheet_row": 34,
-      "abbreviation": "BDN1",
-      "label": "Double Negative B cell 1",
-      "parent": "BDN",
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-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD10",
-        "CD11c",
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-        "CD45",
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-        "CD66b",
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-        "IgE"
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-      "profile": {
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-        "Parent": "BDN",
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-        "Type of Match": "Exact",
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-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
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-        "CL Mapping Notes": ""
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-      "mappings": [
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-          "subject_id": "SOULCAP:SC000033",
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-          "note": "No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
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-                "column": "Required phenotypic markers",
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-              },
-              {
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-                "column": "Required exclusion",
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-              {
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-              {
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-              {
-                "column": "Ideal exclusion",
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-              {
-                "column": "Required phenotypic markers",
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-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD11C:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD185:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "IGE:negative"
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-            "ideal_conflicts": [],
-            "untested_cl_markers": [
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-              "CD3E"
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-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
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-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
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-                  },
-                  {
-                    "via": "exact_alias",
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-                    "tokens": [
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-                  }
-                ]
-              },
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-                "pr": "PR:000001935",
-                "asserted": "False",
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-                    "via": "exact_alias",
-                    "source_token": "CD138",
-                    "tokens": [
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-                  },
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-                    "via": "pro_id",
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-                    "source_token": "CD27",
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-                    "source_token": "CD27L",
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-            ]
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-          "registry_row": 33,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000034",
-      "sheet_row": 35,
-      "abbreviation": "BDN2",
-      "label": "Double Negative B cell 2",
-      "parent": "BDN",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD10",
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD185",
-        "CD19",
-        "CD20",
-        "CD21",
-        "CD24",
-        "CD27",
-        "CD3",
-        "CD33",
-        "CD38",
-        "CD45",
-        "CD56",
-        "CD64",
-        "CD66b",
-        "HLA-DR",
-        "IgD"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "BDN",
-        "Abbreviation": "BDN2",
-        "Full Name": "Double Negative B cell 2",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+) CD27- (CD38lo/-|CD10-) CD24- IgD- CD21- CD11c+ CD185-",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000034",
-          "legacy_subject_id": "SOULCAP:BDN2",
-          "abbreviation": "BDN2",
-          "subject_label": "Double Negative B cell 2",
-          "cl_id": "CL:0000981",
-          "cl_label": "double negative memory B cell",
-          "match_type": "Broad",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
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-            "matched": [
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-                "column": "Required phenotypic markers",
-                "clause": "(CD20:positive OR CD19:positive)",
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-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
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-                  {
-                    "pr": "PR:000001289",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
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-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD27:negative",
-                "assertion": "direct",
-                "axioms": [
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-                    "pr": "PR:000001963",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "True"
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-                ]
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "CD20:positive",
-                "assertion": "inferred",
-                "axioms": [
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-                    "pr": "PR:000001289",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
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-            "contradictions": [],
-            "gaps": [
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-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD56:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD38:low OR CD38:negative OR CD10:negative)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD24:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "IGD:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD21:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD11C:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD185:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD138",
-              "CD27L",
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "8dae6b711327c193f61b8478bc272a1bcf40c98a9b4fa7863f24744ac68f9d94",
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-            "sheet_confirmation": "not_recorded",
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-            "resolution_evidence": [
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-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
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-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001935",
-                "asserted": "False",
-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD138",
-                    "tokens": [
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001935",
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-              {
-                "sense": "negative",
-                "pr": "PR:000001963",
-                "asserted": "True",
-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD27",
-                    "tokens": [
-                      "CD27"
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD27L",
-                    "tokens": [
-                      "CD27L"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001963",
-                    "tokens": [
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-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
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-                    "pr": "PR:000001002",
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-                "pr": "PR:000001289",
-                "asserted": "False",
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-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
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-          "registry_row": 34,
-          "evidence_links": [
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-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
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-      "mapping_status": "proposed"
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-      "label": "Double Negative B cell 3",
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-      "profile_changed": false,
-      "tokens": [
-        "CD10",
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-        "CD123",
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-        "CD14",
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-        "CD16",
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-        "CD19",
-        "CD20",
-        "CD21",
-        "CD24",
-        "CD27",
-        "CD3",
-        "CD33",
-        "CD38",
-        "CD45",
-        "CD56",
-        "CD64",
-        "CD66b",
-        "HLA-DR",
-        "IgD"
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-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "BDN",
-        "Abbreviation": "BDN3",
-        "Full Name": "Double Negative B cell 3",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+) CD27- (CD38lo/-|CD10-) CD24+ IgD- CD21- CD11c- CD185-",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000035",
-          "legacy_subject_id": "SOULCAP:BDN3",
-          "abbreviation": "BDN3",
-          "subject_label": "Double Negative B cell 3",
-          "cl_id": "CL:0000981",
-          "cl_label": "double negative memory B cell",
-          "match_type": "Broad",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
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-            "matched": [
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-                "column": "Required phenotypic markers",
-                "clause": "(CD20:positive OR CD19:positive)",
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-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
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-                  {
-                    "pr": "PR:000001289",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
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-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD27:negative",
-                "assertion": "direct",
-                "axioms": [
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-                    "pr": "PR:000001963",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "True"
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-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "CD20:positive",
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-                "axioms": [
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-                    "pr": "PR:000001289",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
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-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
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-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
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-              {
-                "column": "Required exclusion",
-                "clause": "CD56:negative"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
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-              {
-                "column": "Ideal exclusion",
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-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
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-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
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-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD38:low OR CD38:negative OR CD10:negative)"
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-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD24:positive"
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-              {
-                "column": "Required phenotypic markers",
-                "clause": "IGD:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD21:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD11C:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD185:negative"
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-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD138",
-              "CD27L",
-              "CD3E"
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-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "c32b5275dd23cbfb0e894c71d770a701e441b3f9b64a58505bb2e877432ff311",
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-            "sheet_confirmation": "not_recorded",
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-            "resolution_evidence": [
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-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
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-                "sense": "negative",
-                "pr": "PR:000001963",
-                "asserted": "True",
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-                    "source_token": "CD27",
-                    "tokens": [
-                      "CD27"
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-                  },
-                  {
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-                    "source_token": "CD27L",
-                    "tokens": [
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-                    "via": "pro_id",
-                    "pr": "PR:000001963",
-                    "tokens": [
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-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
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-                    "source_token": "CD19",
-                    "tokens": [
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-                "asserted": "False",
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-                    "source_token": "CD20",
-                    "tokens": [
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-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
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-          "evidence_links": [
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-      "label": "Double Negative B cell 4",
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-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
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-        "HLA-DR",
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-      "profile": {
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-        "WB or PBMC": "",
-        "Parent": "BDN",
-        "Abbreviation": "BDN4",
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-        "Type of Match": "Exact",
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-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+) CD27- (CD38lo/-|CD10-) CD24+ IgD- CD21+ CD11c- CD185+ IgE+",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
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-      },
-      "mappings": [
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-          "subject_id": "SOULCAP:SC000036",
-          "legacy_subject_id": "SOULCAP:BDN4",
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-          "match_type": "Broad",
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-          "evidence_override": "no_marker_axiom",
-          "note": "No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent.",
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-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
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-                "column": "Required phenotypic markers",
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-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
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-              {
-                "column": "Required phenotypic markers",
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-                "assertion": "direct",
-                "axioms": [
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-                    "sense": "negative",
-                    "asserted": "True"
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-              {
-                "column": "Ideal phenotypic markers",
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-                    "relation": "RO:0002104",
-                    "sense": "positive",
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-              }
-            ],
-            "contradictions": [],
-            "gaps": [
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-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
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-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
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-              {
-                "column": "Required exclusion",
-                "clause": "CD56:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
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-              {
-                "column": "Ideal exclusion",
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-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
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-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD38:low OR CD38:negative OR CD10:negative)"
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-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD24:positive"
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-          "evidence_override": "no_marker_axiom",
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-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
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-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
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-                "column": "Ideal exclusion",
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-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
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-                "clause": "CD45:positive"
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-              {
-                "column": "Required phenotypic markers",
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-                "column": "Required phenotypic markers",
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-                "column": "Required phenotypic markers",
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-                "asserted": "False",
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-                "sense": "positive",
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-                "sense": "positive",
-                "pr": "PR:000001289",
-                "asserted": "False",
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-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
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-          "registry_row": 39,
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-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
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-        "CD27",
-        "CD3",
-        "CD33",
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-                "column": "Required exclusion",
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-                "column": "Required exclusion",
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-                "column": "Ideal exclusion",
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-              {
-                "column": "Required phenotypic markers",
-                "clause": "IGG:negative"
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-                "column": "Required phenotypic markers",
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-              "CD3E"
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-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
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-                "asserted": "False",
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-                  },
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-                    "source_token": "CD27L",
-                    "tokens": [
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-                    "tokens": [
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-          "registry_row": 41,
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-      "mapping_status": "proposed"
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-      "subject_id": "SOULCAP:SC000043",
-      "sheet_row": 44,
-      "abbreviation": "IgG",
-      "label": "IgG-Class Switched B cell",
-      "parent": "Switched",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD27",
-        "CD3",
-        "CD33",
-        "CD38",
-        "CD45",
-        "CD56",
-        "CD64",
-        "CD66b",
-        "HLA-DR",
-        "IgA",
-        "IgD",
-        "IgE",
-        "IgG",
-        "IgM"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "Switched",
-        "Abbreviation": "IgG",
-        "Full Name": "IgG-Class Switched B cell",
-        "synonym": "",
-        "Type of Match": "Surface Only (SO)",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+) CD27+ CD38lo/- IgD- IgM- IgA- IgG+ IgE-",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000043",
-          "legacy_subject_id": "SOULCAP:IgG",
-          "abbreviation": "IgG",
-          "subject_label": "IgG-Class Switched B cell",
-          "cl_id": "CL:0000979",
-          "cl_label": "IgG memory B cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified; batch lexical search had wrongly picked CL:0002117 'IgG-negative class switched memory B cell' — the opposite polarity of what this row defines.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD20:positive OR CD19:positive)",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  },
-                  {
-                    "pr": "PR:000001289",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD27:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001963",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "CD20:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001289",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD56:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD38:low OR CD38:negative)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "IGD:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "IGM:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "IGA:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "IGG:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "IGE:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD138",
-              "CD27L",
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "9e0fad56a38767dcde18d8731a8fe7a614d906041b2d9a458862676a783d4a10",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001935",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD138",
-                    "tokens": [
-                      "CD138"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001935",
-                    "tokens": [
-                      "CD138"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001289",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001963",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD27",
-                    "tokens": [
-                      "CD27"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD27L",
-                    "tokens": [
-                      "CD27L"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001963",
-                    "tokens": [
-                      "CD27"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 42,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000044",
-      "sheet_row": 45,
-      "abbreviation": "IgE",
-      "label": "IgE-Class Switched B cell",
-      "parent": "Switched",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD27",
-        "CD3",
-        "CD33",
-        "CD38",
-        "CD45",
-        "CD56",
-        "CD64",
-        "CD66b",
-        "HLA-DR",
-        "IgA",
-        "IgD",
-        "IgE",
-        "IgG",
-        "IgM"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "Switched",
-        "Abbreviation": "IgE",
-        "Full Name": "IgE-Class Switched B cell",
-        "synonym": "",
-        "Type of Match": "Surface Only (SO)",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-",
-        "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-",
-        "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+) CD27+ CD38lo/- IgD- IgM- IgA- IgG- IgE+",
-        "Ideal phenotypic markers": "CD20+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000044",
-          "legacy_subject_id": "SOULCAP:IgE",
-          "abbreviation": "IgE",
-          "subject_label": "IgE-Class Switched B cell",
-          "cl_id": "CL:0000948",
-          "cl_label": "IgE memory B cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Lexical match, OAK-confirmed.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD20:positive OR CD19:positive)",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  },
-                  {
-                    "pr": "PR:000001289",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD27:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001963",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "CD20:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001289",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD56:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD38:low OR CD38:negative)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "IGD:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "IGM:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "IGA:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "IGG:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "IGE:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD138",
-              "CD27L",
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "9ca73feda9e46115c036f84fd80769befad7829cdc6ed96a52aa88fca4f7a59e",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001935",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD138",
-                    "tokens": [
-                      "CD138"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001935",
-                    "tokens": [
-                      "CD138"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001289",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001963",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD27",
-                    "tokens": [
-                      "CD27"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD27L",
-                    "tokens": [
-                      "CD27L"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001963",
-                    "tokens": [
-                      "CD27"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 43,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000045",
-      "sheet_row": 46,
-      "abbreviation": "T cell",
-      "label": "T lymphocyte",
-      "parent": "",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "T cell",
-        "Full Name": "T lymphocyte",
-        "synonym": "T lymph",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000045",
-          "legacy_subject_id": "SOULCAP:T_cell",
-          "abbreviation": "T cell",
-          "subject_label": "T lymphocyte",
-          "cl_id": "CL:0000084",
-          "cl_label": "T cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified; marker scoring returned unrelated myeloid terms.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "a90c3eddb386b77ec690a7f2a2eb97716a7199b789c245863a4c0041e96e17b1",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 44,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000046",
-      "sheet_row": 47,
-      "abbreviation": "CD56+ T cell",
-      "label": "CD56+ T cell",
-      "parent": "T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD45",
-        "CD56",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "T cell",
-        "Abbreviation": "CD56+ T cell",
-        "Full Name": "CD56+ T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ CD56+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "Incorrectly called NKT-like or NKT",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000046",
-          "legacy_subject_id": "SOULCAP:CD56+_T_cell",
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-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term.",
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-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
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-                "column": "Ideal exclusion",
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-          "evidence_links": [
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-      "abbreviation": "CD56+ CD4 T cell",
-      "label": "CD56+ CD4 T cell",
-      "parent": "CD4+ T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
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-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
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-        "CD66b",
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-        "WB or PBMC": "",
-        "Parent": "CD4+ T cell",
-        "Abbreviation": "CD56+ CD4 T cell",
-        "Full Name": "CD56+ CD4 T cell",
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-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
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-      "mappings": [
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-          "literature_evidence": "",
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-              {
-                "column": "Required phenotypic markers",
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-                "column": "Required phenotypic markers",
-                "clause": "CD4:positive"
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-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:positive"
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-            "literature_evidence": "",
-            "curator_evidence": "",
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-                    "tokens": [
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-                "sense": "positive",
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-          "evidence_links": [
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-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
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-      "abbreviation": "CD56+ CD8 T cell",
-      "label": "CD56+ CD8 T cell",
-      "parent": "CD8+ T cell",
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-      "tokens": [
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-        "CD15",
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-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD56",
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-        "CD66b",
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-        "Parent": "CD8+ T cell",
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-      "mappings": [
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-              {
-                "column": "Required phenotypic markers",
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-      "mappings": [
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-          "note": "Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term.",
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-          "subject_id": "SOULCAP:SC000058",
-          "legacy_subject_id": "SOULCAP:CD56+_CD8-/CD8-_TCRgd",
-          "abbreviation": "CD56+ CD8-/CD8- TCRgd",
-          "subject_label": "CD56+ CD8-/CD8- gamma/delta T cell",
-          "cl_id": "CL:4052055",
-          "cl_label": "mature NK T cell, human",
-          "match_type": "Broad",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD56:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001024",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:negative OR TCRGD:positive)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "51660216e5f35ba2abe0ff0944ef9899083a81d9233c1b018922ff8d00e6734a",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "positive",
-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001874",
-                "asserted": "False",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:P13591",
-                "asserted": "True",
-                "paths": []
-              }
-            ]
-          },
-          "registry_row": 73,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000059",
-      "sheet_row": 60,
-      "abbreviation": "iNKT",
-      "label": "Invariant Natural Killer T cell",
-      "parent": "T cell",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab+|TCRgd-) (TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCR Vb11+ ",
-          "error": "mixed '|' and space in a group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "T cell",
-        "Abbreviation": "iNKT",
-        "Full Name": "Invariant Natural Killer T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) (TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCR Vb11+ ",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "CD4+/- CD8-; NOT CD56+ T cell",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000059",
-          "legacy_subject_id": "SOULCAP:iNKT",
-          "abbreviation": "iNKT",
-          "subject_label": "Invariant Natural Killer T cell",
-          "cl_id": "CL:0000814",
-          "cl_label": "mature NK T cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified. Same term flagged in repo issue #13 for a rename to 'iNKT cell' (filed upstream, awaiting review) — mapping is correct either way.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "invalid_profile",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [
-              "Required phenotypic markers: mixed '|' and space in a group"
-            ],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "60d4418f4342fb333e84d3d92b22dabdede98114b0a29f3c3f48abfab7e76e12",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": ""
-          },
-          "registry_row": 47,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000060",
-      "sheet_row": 61,
-      "abbreviation": "TCRab",
-      "label": "alpha/beta T cell",
-      "parent": "T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "HLA-DR",
-        "TCRab",
-        "TCRgd"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "T cell",
-        "Abbreviation": "TCRab",
-        "Full Name": "alpha/beta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-)",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000060",
-          "legacy_subject_id": "SOULCAP:TCRab",
-          "abbreviation": "TCRab",
-          "subject_label": "alpha/beta T cell",
-          "cl_id": "CL:0000789",
-          "cl_label": "alpha-beta T cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified; marker scoring returned unrelated myeloid terms.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:positive OR TCRGD:negative)"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "ba4169b61b018b402de9c4bdf1a7567c89a69d002b6069e3dcd2040bf2174626",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 45,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000061",
-      "sheet_row": 62,
-      "abbreviation": "TCRgd",
-      "label": "gamma/delta T cell",
-      "parent": "T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "HLA-DR",
-        "TCRab",
-        "TCRgd"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "T cell",
-        "Abbreviation": "TCRgd",
-        "Full Name": "gamma/delta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+)",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000061",
-          "legacy_subject_id": "SOULCAP:TCRgd",
-          "abbreviation": "TCRgd",
-          "subject_label": "gamma/delta T cell",
-          "cl_id": "CL:0000798",
-          "cl_label": "gamma-delta T cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified; marker scoring returned unrelated myeloid terms.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:negative OR TCRGD:positive)"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "d7791919e73dbff413ca7cdf0c8b00616465d67ed2a7b2301cb1a628e972622e",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 46,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000062",
-      "sheet_row": 63,
-      "abbreviation": "CD4+ T cell",
-      "label": "alpha/beta and gamma/delta CD4+ T cells",
-      "parent": "T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "T cell",
-        "Abbreviation": "CD4+ T cell",
-        "Full Name": "alpha/beta and gamma/delta CD4+ T cells",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ CD4+ CD8-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000062",
-          "legacy_subject_id": "SOULCAP:CD4+_T_cell",
-          "abbreviation": "CD4+ T cell",
-          "subject_label": "alpha/beta and gamma/delta CD4+ T cells",
-          "cl_id": "CL:0000624",
-          "cl_label": "CD4-positive, alpha-beta T cell",
-          "match_type": "Broad",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "CL has no combined alpha-beta+gamma-delta CD4+ term; alpha-beta dominates the CD4+ compartment.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:positive",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001004",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "13a042caf6eaa90447c12e475dcdeb8c94ab2c34f1847f43c379e4aff9aa0435",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000025402",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001004",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD4",
-                    "tokens": [
-                      "CD4"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001004",
-                    "tokens": [
-                      "CD4"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 52,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000063",
-      "sheet_row": 64,
-      "abbreviation": "CD8+ T cell",
-      "label": "alpha/beta and gamma/delta CD8+ T cells",
-      "parent": "T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "T cell",
-        "Abbreviation": "CD8+ T cell",
-        "Full Name": "alpha/beta and gamma/delta CD8+ T cells",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ CD4- CD8+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000063",
-          "legacy_subject_id": "SOULCAP:CD8+_T_cell",
-          "abbreviation": "CD8+ T cell",
-          "subject_label": "alpha/beta and gamma/delta CD8+ T cells",
-          "cl_id": "CL:0000625",
-          "cl_label": "CD8-positive, alpha-beta T cell",
-          "match_type": "Broad",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Same reasoning as CD4+ T cell.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:negative",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001004",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD8A"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "ee71924d4eb86799cfb40fcc026874f16ac52b1df80dfa5bc25d00c7ef1bf019",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001004",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD4",
-                    "tokens": [
-                      "CD4"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001004",
-                    "tokens": [
-                      "CD4"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001084",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000025402",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000025403",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 53,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000064",
-      "sheet_row": 65,
-      "abbreviation": "CD4+/CD8+ T cell",
-      "label": "alpha/beta and gamma/delta CD4+ and CD8+ T cells",
-      "parent": "T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "T cell",
-        "Abbreviation": "CD4+/CD8+ T cell",
-        "Full Name": "alpha/beta and gamma/delta CD4+ and CD8+ T cells",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ CD4+ CD8+  ",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000064",
-          "legacy_subject_id": "SOULCAP:CD4+/CD8+_T_cell",
-          "abbreviation": "CD4+/CD8+ T cell",
-          "subject_label": "alpha/beta and gamma/delta CD4+ and CD8+ T cells",
-          "cl_id": "CL:0000789",
-          "cl_label": "alpha-beta T cell",
-          "match_type": "Broad",
-          "uncertain": true,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "No CD4+CD8+ double-positive CL term found at all; peripheral DP T cells are themselves biologically unusual.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "1a94242804d7d285d6e99a84f940c5920cba588e703bc9807bd7066e7a931273",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 54,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000065",
-      "sheet_row": 66,
-      "abbreviation": "CD4-/CD8- T cell",
-      "label": "alpha/beta and gamma/delta CD4- and CD8- T cells",
-      "parent": "T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "T cell",
-        "Abbreviation": "CD4-/CD8- T cell",
-        "Full Name": "alpha/beta and gamma/delta CD4- and CD8- T cells",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ CD4- CD8-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000065",
-          "legacy_subject_id": "SOULCAP:CD4-/CD8-_T_cell",
-          "abbreviation": "CD4-/CD8- T cell",
-          "subject_label": "alpha/beta and gamma/delta CD4- and CD8- T cells",
-          "cl_id": "CL:0000084",
-          "cl_label": "T cell",
-          "match_type": "Broad",
-          "uncertain": true,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "No peripheral (non-thymic) double-negative term spanning both TCR types; only a thymocyte-stage term exists (wrong tissue).",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "81d30ff7dab4278ec39ef4008e2e6cb051865ff423a24182495de6f6150eff6e",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 55,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000066",
-      "sheet_row": 67,
-      "abbreviation": "CD4+ TCRab T cell",
-      "label": "CD4+ alpha/beta T cell",
-      "parent": "TCRab",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "HLA-DR",
-        "TCRab",
-        "TCRgd"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRab",
-        "Abbreviation": "CD4+ TCRab T cell",
-        "Full Name": "CD4+ alpha/beta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) CD4+ CD8-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000066",
-          "legacy_subject_id": "SOULCAP:CD4+_TCRab_T_cell",
-          "abbreviation": "CD4+ TCRab T cell",
-          "subject_label": "CD4+ alpha/beta T cell",
-          "cl_id": "CL:0000624",
-          "cl_label": "CD4-positive, alpha-beta T cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:positive",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001004",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "True"
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-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:positive OR TCRGD:negative)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "3509d97ed33d109d83671dd2292c0945863b4eeead30a216c95cfb9c41c4a5f9",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000025402",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001004",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD4",
-                    "tokens": [
-                      "CD4"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001004",
-                    "tokens": [
-                      "CD4"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 49,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000067",
-      "sheet_row": 68,
-      "abbreviation": "CD8+ TCRab T cell",
-      "label": "CD8+ alpha/beta T cell",
-      "parent": "TCRab",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "HLA-DR",
-        "TCRab",
-        "TCRgd"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRab",
-        "Abbreviation": "CD8+ TCRab T cell",
-        "Full Name": "CD8+ alpha/beta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) CD4- CD8+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000067",
-          "legacy_subject_id": "SOULCAP:CD8+_TCRab_T_cell",
-          "abbreviation": "CD8+ TCRab T cell",
-          "subject_label": "CD8+ alpha/beta T cell",
-          "cl_id": "CL:0000625",
-          "cl_label": "CD8-positive, alpha-beta T cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:negative",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001004",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "True"
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-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:positive OR TCRGD:negative)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD8A"
-            ],
-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "5f511184f5b3fb48855d4ce1b1ed1777e79ca590353b921e6c8b66c7e79e2c17",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001004",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD4",
-                    "tokens": [
-                      "CD4"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001004",
-                    "tokens": [
-                      "CD4"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001084",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000025402",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000025403",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 50,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000068",
-      "sheet_row": 69,
-      "abbreviation": "CD4+/CD8+ TCRab T cell",
-      "label": "CD4+ and CD8+ alpha/beta T cell",
-      "parent": "TCRab",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "HLA-DR",
-        "TCRab",
-        "TCRgd"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRab",
-        "Abbreviation": "CD4+/CD8+ TCRab T cell",
-        "Full Name": "CD4+ and CD8+ alpha/beta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) CD4+ CD8+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000068",
-          "legacy_subject_id": "SOULCAP:CD4+/CD8+_TCRab_T_cell",
-          "abbreviation": "CD4+/CD8+ TCRab T cell",
-          "subject_label": "CD4+ and CD8+ alpha/beta T cell",
-          "cl_id": "CL:0000789",
-          "cl_label": "alpha-beta T cell",
-          "match_type": "Broad",
-          "uncertain": true,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "No CD4+CD8+ double-positive alpha-beta term found.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:positive OR TCRGD:negative)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "03c69fac8ec012810b035a54f82237833b6f4299be38ce9139c761ca28f65d09",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 56,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000069",
-      "sheet_row": 70,
-      "abbreviation": "CD4-/CD8- TCRab T cell",
-      "label": "CD4- and CD8- alpha/beta T cell",
-      "parent": "TCRab",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "HLA-DR",
-        "TCRab",
-        "TCRgd"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRab",
-        "Abbreviation": "CD4-/CD8- TCRab T cell",
-        "Full Name": "CD4- and CD8- alpha/beta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) CD4- CD8-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000069",
-          "legacy_subject_id": "SOULCAP:CD4-/CD8-_TCRab_T_cell",
-          "abbreviation": "CD4-/CD8- TCRab T cell",
-          "subject_label": "CD4- and CD8- alpha/beta T cell",
-          "cl_id": "CL:0000789",
-          "cl_label": "alpha-beta T cell",
-          "match_type": "Broad",
-          "uncertain": true,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Only CL:0002489 'double negative thymocyte' found — wrong tissue/maturity stage for a blood/PBMC panel.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:positive OR TCRGD:negative)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "147cd19bfa49697c170198087716cdfac8d82d0db6688150b183bb8e9c0340e5",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 57,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000070",
-      "sheet_row": 71,
-      "abbreviation": "CD4+ TCRgd T cell",
-      "label": "CD4+ gamma/delta T cell",
-      "parent": "TCRgd",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "HLA-DR",
-        "TCRab",
-        "TCRgd"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRgd",
-        "Abbreviation": "CD4+ TCRgd T cell",
-        "Full Name": "CD4+ gamma/delta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) CD4+ CD8-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000070",
-          "legacy_subject_id": "SOULCAP:CD4+_TCRgd_T_cell",
-          "abbreviation": "CD4+ TCRgd T cell",
-          "subject_label": "CD4+ gamma/delta T cell",
-          "cl_id": "CL:0000798",
-          "cl_label": "gamma-delta T cell",
-          "match_type": "Broad",
-          "uncertain": true,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "CD4+ gamma-delta T cells are atypical/rare; no CL term found.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:negative OR TCRGD:positive)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "737860c20417038a9c5b8c687ec9c6acfc02afd4216730694025bb805010eae3",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 58,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000071",
-      "sheet_row": 72,
-      "abbreviation": "CD8+ TCRgd T cell",
-      "label": "CD8+ gamma/delta T cell",
-      "parent": "TCRgd",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "HLA-DR",
-        "TCRab",
-        "TCRgd"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRgd",
-        "Abbreviation": "CD8+ TCRgd T cell",
-        "Full Name": "CD8+ gamma/delta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) CD4- CD8+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000071",
-          "legacy_subject_id": "SOULCAP:CD8+_TCRgd_T_cell",
-          "abbreviation": "CD8+ TCRgd T cell",
-          "subject_label": "CD8+ gamma/delta T cell",
-          "cl_id": "CL:0000798",
-          "cl_label": "gamma-delta T cell",
-          "match_type": "Broad",
-          "uncertain": true,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "No CD8+-specific gamma-delta CL term found.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
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-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
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-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
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-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:negative OR TCRGD:positive)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "4bdfff88d621b6e25864f108e587296403ce0eb3f750a245df9360950cf11c2a",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 59,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000072",
-      "sheet_row": 73,
-      "abbreviation": "CD4+/CD8+ TCRgd",
-      "label": "CD4+/CD8+ gamma/delta T cell",
-      "parent": "TCRgd",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "HLA-DR",
-        "TCRab",
-        "TCRgd"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRgd",
-        "Abbreviation": "CD4+/CD8+ TCRgd",
-        "Full Name": "CD4+/CD8+ gamma/delta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) CD4+ CD8+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000072",
-          "legacy_subject_id": "SOULCAP:CD4+/CD8+_TCRgd",
-          "abbreviation": "CD4+/CD8+ TCRgd",
-          "subject_label": "CD4+/CD8+ gamma/delta T cell",
-          "cl_id": "CL:0000798",
-          "cl_label": "gamma-delta T cell",
-          "match_type": "Broad",
-          "uncertain": true,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "No CD4+CD8+ double-positive gamma-delta term found.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
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-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
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-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
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-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:negative OR TCRGD:positive)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "133eef6f9076e3eb898ce7cacf7933f562be6fbd2f02d633a0eabe79675295e5",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 60,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000073",
-      "sheet_row": 74,
-      "abbreviation": "CD4-/CD8- TCRgd",
-      "label": "CD4-/CD8- gamma/delta T cell",
-      "parent": "TCRgd",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "HLA-DR",
-        "TCRab",
-        "TCRgd"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRgd",
-        "Abbreviation": "CD4-/CD8- TCRgd",
-        "Full Name": "CD4-/CD8- gamma/delta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) CD4- CD8-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000073",
-          "legacy_subject_id": "SOULCAP:CD4-/CD8-_TCRgd",
-          "abbreviation": "CD4-/CD8- TCRgd",
-          "subject_label": "CD4-/CD8- gamma/delta T cell",
-          "cl_id": "CL:0000803",
-          "cl_label": "CD4-negative, CD8-negative gamma-delta T cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified; double-negative is the classical gamma-delta T cell phenotype.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:negative",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001004",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:negative OR TCRGD:positive)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD8A"
-            ],
-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "14aa1fa36c44a759182a64cb01ef6287e81a7962a7a4d9e069923f7cbb98e097",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001004",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD4",
-                    "tokens": [
-                      "CD4"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001004",
-                    "tokens": [
-                      "CD4"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001084",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 51,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000074",
-      "sheet_row": 75,
-      "abbreviation": "MAIT",
-      "label": "Mucosal-associated Invariant T cell",
-      "parent": "T Lymph",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab+|TCRgd-) (TCRVa7.2+|MR1 Tetramer+) CD161+",
-          "error": "mixed '|' and space in a group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "T Lymph",
-        "Abbreviation": "MAIT",
-        "Full Name": "Mucosal-associated Invariant T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) (TCRVa7.2+|MR1 Tetramer+) CD161+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "CD4+/- CD8+/-",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000074",
-          "legacy_subject_id": "SOULCAP:MAIT",
-          "abbreviation": "MAIT",
-          "subject_label": "Mucosal-associated Invariant T cell",
-          "cl_id": "CL:0000940",
-          "cl_label": "mucosal-associated invariant T cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Lexical match, OAK-confirmed.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "invalid_profile",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [
-              "Required phenotypic markers: mixed '|' and space in a group"
-            ],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "e05e515df11c34b85a932345238aa1a02785a793c4c9782e99728f4221b7692f",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": ""
-          },
-          "registry_row": 48,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000075",
-      "sheet_row": 76,
-      "abbreviation": "Conv TCRab",
-      "label": "Conv TCRab",
-      "parent": "T Lymph",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1 Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCR Vb11+]- ",
-          "error": "mixed '|' and space in a group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "T Lymph",
-        "Abbreviation": "Conv TCRab",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1 Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCR Vb11+]- ",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000076",
-      "sheet_row": 77,
-      "abbreviation": "CD4+ Conv TCRab",
-      "label": "CD4+ Conv TCRab",
-      "parent": "ConT TCRab",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1 Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRva24+|CD1d-a-GalCer Tetramer+) TCR VB11+]- CD4+ CD8-",
-          "error": "mixed '|' and space in a group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "ConT TCRab",
-        "Abbreviation": "CD4+ Conv TCRab",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1 Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRva24+|CD1d-a-GalCer Tetramer+) TCR VB11+]- CD4+ CD8-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000077",
-      "sheet_row": 78,
-      "abbreviation": "CD8+ Conv TCRab",
-      "label": "CD8+ Conv TCRab",
-      "parent": "ConT TCRab",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1 Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCR Vb11+]- CD4- CD8+",
-          "error": "mixed '|' and space in a group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "ConT TCRab",
-        "Abbreviation": "CD8+ Conv TCRab",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1 Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCR Vb11+]- CD4- CD8+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000078",
-      "sheet_row": 79,
-      "abbreviation": "CD4+/CD8+ Conv TCRab",
-      "label": "CD4+/CD8+ Conv TCRab",
-      "parent": "ConT TCRab",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1 Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRva24+|CD1d-a-GalCer Tetramer+) TCR VB11+]- CD4+ CD8+",
-          "error": "mixed '|' and space in a group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "ConT TCRab",
-        "Abbreviation": "CD4+/CD8+ Conv TCRab",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1 Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRva24+|CD1d-a-GalCer Tetramer+) TCR VB11+]- CD4+ CD8+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000079",
-      "sheet_row": 80,
-      "abbreviation": "CD4-/CD8- Conv TCRab",
-      "label": "CD4-/CD8- Conv TCRab",
-      "parent": "ConT TCRab",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1 Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCR Vb11+]- CD4- CD8-",
-          "error": "mixed '|' and space in a group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "ConT TCRab",
-        "Abbreviation": "CD4-/CD8- Conv TCRab",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1 Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCR Vb11+]- CD4- CD8-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000080",
-      "sheet_row": 81,
-      "abbreviation": "Tcm",
-      "label": "Central memory alpha/beta and gamma/delta T cells",
-      "parent": "T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "T cell",
-        "Abbreviation": "Tcm",
-        "Full Name": "Central memory alpha/beta and gamma/delta T cells",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000081",
-      "sheet_row": 82,
-      "abbreviation": "CD4+ Tcm",
-      "label": "CD4+ central memory alpha/beta and gamma/delta T cells",
-      "parent": "CD4+ T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "CD4+ T cell",
-        "Abbreviation": "CD4+ Tcm",
-        "Full Name": "CD4+ central memory alpha/beta and gamma/delta T cells",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000082",
-      "sheet_row": 83,
-      "abbreviation": "CD4+ TCRab Tcm",
-      "label": "CD4+ central memory alpha/beta T cell",
-      "parent": "CD4+ TCRab T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "CD4+ TCRab T cell",
-        "Abbreviation": "CD4+ TCRab Tcm ",
-        "Full Name": "CD4+ central memory alpha/beta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
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-          "subject_id": "SOULCAP:SC000082",
-          "legacy_subject_id": "SOULCAP:CD4+_TCRab_Tcm",
-          "abbreviation": "CD4+ TCRab Tcm",
-          "subject_label": "CD4+ central memory alpha/beta T cell",
-          "cl_id": "CL:0000904",
-          "cl_label": "central memory CD4-positive, alpha-beta T cell",
-          "match_type": "Exact",
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-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified.",
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-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
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-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
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-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
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-              "CD197",
-              "CD25",
-              "CD4",
-              "CD45",
-              "CD45RA",
-              "CD45RO",
-              "CDW127",
-              "CDW197"
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-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
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-                "sense": "negative",
-                "pr": "PR:000001006",
-                "asserted": "False",
-                "paths": [
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-                    "via": "pro_id",
-                    "pr": "PR:000001006",
-                    "tokens": [
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-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001015",
-                "asserted": "True",
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-                    "source_token": "CD45RA",
-                    "tokens": [
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-              {
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-                "pr": "PR:000001380",
-                "asserted": "False",
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-                    "via": "exact_alias",
-                    "source_token": "CD25",
-                    "tokens": [
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-                  },
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-                    "pr": "PR:000001380",
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-              {
-                "sense": "negative",
-                "pr": "PR:000025402",
-                "asserted": "False",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001004",
-                "asserted": "False",
-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD4",
-                    "tokens": [
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-                    "pr": "PR:000001004",
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-                "sense": "positive",
-                "pr": "PR:000001006",
-                "asserted": "False",
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-                    "pr": "PR:000001006",
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-              {
-                "sense": "positive",
-                "pr": "PR:000001017",
-                "asserted": "False",
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-                    "tokens": [
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-              {
-                "sense": "positive",
-                "pr": "PR:000001203",
-                "asserted": "True",
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-                    "via": "exact_alias",
-                    "source_token": "CD197",
-                    "tokens": [
-                      "CD197"
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW197",
-                    "tokens": [
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-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001869",
-                "asserted": "False",
-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD127",
-                    "tokens": [
-                      "CD127"
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW127",
-                    "tokens": [
-                      "CDW127"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001869",
-                    "tokens": [
-                      "CD127"
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-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 77,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
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-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000083",
-      "sheet_row": 84,
-      "abbreviation": "CD4+ TCRgd Tcm",
-      "label": "CD4+ central memory gamma/delta T cell",
-      "parent": "CD4+ TCRgd T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
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-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
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-        "WB or PBMC": "",
-        "Parent": "CD4+ TCRgd T cell",
-        "Abbreviation": "CD4+ TCRgd Tcm",
-        "Full Name": "CD4+ central memory gamma/delta T cell ",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
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-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000084",
-      "sheet_row": 85,
-      "abbreviation": "CD8+ Tcm",
-      "label": "CD8+ central memory T cell",
-      "parent": "CD8+ T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "CD8+ T cell",
-        "Abbreviation": "CD8+ Tcm",
-        "Full Name": "CD8+ central memory T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000085",
-      "sheet_row": 86,
-      "abbreviation": "CD8+ TCRab Tcm",
-      "label": "CD8+  central memory alpha/beta T cell",
-      "parent": "CD8+ TCRab T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "CD8+ TCRab T cell",
-        "Abbreviation": "CD8+ TCRab Tcm ",
-        "Full Name": "CD8+  central memory alpha/beta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000085",
-          "legacy_subject_id": "SOULCAP:CD8+_TCRab_Tcm",
-          "abbreviation": "CD8+ TCRab Tcm",
-          "subject_label": "CD8+ central memory alpha/beta T cell",
-          "cl_id": "CL:0000907",
-          "cl_label": "central memory CD8-positive, alpha-beta T cell",
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-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified.",
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-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
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-            "contradictions": [],
-            "gaps": [
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-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
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-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
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-              "CD197",
-              "CD25",
-              "CD4",
-              "CD45",
-              "CD45RA",
-              "CD45RO",
-              "CD8A",
-              "CDW127",
-              "CDW197"
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-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
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-            "profile_sha256": "9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
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-                "sense": "negative",
-                "pr": "PR:000001004",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD4",
-                    "tokens": [
-                      "CD4"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001004",
-                    "tokens": [
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-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001006",
-                "asserted": "False",
-                "paths": [
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-                    "via": "pro_id",
-                    "pr": "PR:000001006",
-                    "tokens": [
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-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001015",
-                "asserted": "True",
-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD45RA",
-                    "tokens": [
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-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001380",
-                "asserted": "False",
-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD25",
-                    "tokens": [
-                      "CD25"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001380",
-                    "tokens": [
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-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001006",
-                "asserted": "False",
-                "paths": [
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-                    "via": "pro_id",
-                    "pr": "PR:000001006",
-                    "tokens": [
-                      "CD45"
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-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001017",
-                "asserted": "False",
-                "paths": [
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-                    "source_token": "CD45RO",
-                    "tokens": [
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-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001084",
-                "asserted": "False",
-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
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-                  },
-                  {
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-                    "source_token": "CD8A",
-                    "tokens": [
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-                  }
-                ]
-              },
-              {
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-                "pr": "PR:000001203",
-                "asserted": "True",
-                "paths": [
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-                    "source_token": "CD197",
-                    "tokens": [
-                      "CD197"
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW197",
-                    "tokens": [
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-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001869",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD127",
-                    "tokens": [
-                      "CD127"
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW127",
-                    "tokens": [
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-                  },
-                  {
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-                    "pr": "PR:000001869",
-                    "tokens": [
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-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000025402",
-                "asserted": "False",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000025403",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
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-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 78,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
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-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000086",
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-      "abbreviation": "CD8+ TCRgd Tcm",
-      "label": "CD8+ central memory gamma/delta T cell",
-      "parent": "CD8+ TCRgd T cell",
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-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
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-        "CD123",
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-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
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-        "WB or PBMC": "",
-        "Parent": "CD8+ TCRgd T cell",
-        "Abbreviation": "CD8+ TCRgd Tcm",
-        "Full Name": "CD8+ central memory gamma/delta T cell ",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
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-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000087",
-      "sheet_row": 88,
-      "abbreviation": "Tnaive",
-      "label": "Naive alpha/beta and gamma/delta T cell",
-      "parent": "T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "T cell",
-        "Abbreviation": "Tnaive",
-        "Full Name": "Naive alpha/beta and gamma/delta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
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-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
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-          "subject_id": "SOULCAP:SC000087",
-          "legacy_subject_id": "SOULCAP:Tnaive",
-          "abbreviation": "Tnaive",
-          "subject_label": "Naive alpha/beta and gamma/delta T cell",
-          "cl_id": "CL:0000898",
-          "cl_label": "naive T cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified; the one generic (non-CD4/CD8-split) differentiation-state term that does exist in CL.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
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-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
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-            "contradictions": [],
-            "gaps": [
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-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
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-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
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-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
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-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
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-              "CD44",
-              "CD45",
-              "CD45RA",
-              "CD62",
-              "CD62L",
-              "CDW127",
-              "CDW197",
-              "CDW44"
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-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "high",
-                "pr": "PR:000001318",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD62",
-                    "tokens": [
-                      "CD62"
-                    ]
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-                "pr": "PR:000001203",
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-                    "source_token": "CD197",
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-                    "source_token": "CDW197",
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-                "pr": "PR:000001869",
-                "asserted": "False",
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-                    "source_token": "CD127",
-                    "tokens": [
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-                  },
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-                    "source_token": "CDW127",
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-          "evidence_links": [
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-    {
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-    },
-    {
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-        "WB or PBMC": "",
-        "Parent": "CD8+ T cell",
-        "Abbreviation": "CD8+ Tnaive",
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-        "CL Mapping Notes": ""
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-    },
-    {
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-                "asserted": "False",
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-                    "source_token": "CD8A",
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-                  },
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-                    "source_token": "CD8A",
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-                  },
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-                    "source_token": "CD127",
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-                  },
-                  {
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-              },
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-                "pr": "PR:000025403",
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-        "CD16",
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-        "CD20",
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-        "Parent": "CD8+ TCRgd T cell",
-        "Abbreviation": "CD8+ TCRgd Tnaive",
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-        "OLS CL identifier": "",
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-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
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-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
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-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
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-      "abbreviation": "Tem",
-      "label": "Effector memory T cell",
-      "parent": "T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
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-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
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-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
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-        "WB or PBMC": "",
-        "Parent": "T cell",
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-        "OLS CL identifier": "",
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-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
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-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000095",
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-      "label": "CD4+ effector memory alpha/beta and gamma/delta T cells",
-      "parent": "CD4+ T cell",
-      "specimen": "",
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-      "profile_changed": false,
-      "tokens": [
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-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
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-        "WB or PBMC": "",
-        "Parent": "CD4+ T cell",
-        "Abbreviation": "CD4+ Tem",
-        "Full Name": "CD4+ effector memory alpha/beta and gamma/delta T cells",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
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-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000096",
-      "sheet_row": 97,
-      "abbreviation": "CD4+ TCRab Tem",
-      "label": "CD4+ effector memory alpha/beta T cell",
-      "parent": "CD4+ TCRab T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
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-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "CD4+ TCRab T cell",
-        "Abbreviation": "CD4+ TCRab Tem ",
-        "Full Name": "CD4+ effector memory alpha/beta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
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-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
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-          "subject_id": "SOULCAP:SC000096",
-          "legacy_subject_id": "SOULCAP:CD4+_TCRab_Tem",
-          "abbreviation": "CD4+ TCRab Tem",
-          "subject_label": "CD4+ effector memory alpha/beta T cell",
-          "cl_id": "CL:0000905",
-          "cl_label": "effector memory CD4-positive, alpha-beta T cell",
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-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified.",
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-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
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-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
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-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
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-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
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-              "CD25",
-              "CD4",
-              "CD45",
-              "CD45RA",
-              "CD45RO",
-              "CDW127",
-              "CDW197"
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-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
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-            "curator_evidence": "",
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-            "profile_sha256": "9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
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-                "sense": "negative",
-                "pr": "PR:000001006",
-                "asserted": "False",
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-                    "pr": "PR:000001006",
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-                "pr": "PR:000001015",
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-                "pr": "PR:000001203",
-                "asserted": "True",
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-                    "source_token": "CD197",
-                    "tokens": [
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-                "pr": "PR:000001380",
-                "asserted": "False",
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-                    "source_token": "CD25",
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-                "asserted": "False",
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-                "asserted": "False",
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-                    "source_token": "CD45RO",
-                    "tokens": [
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-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001869",
-                "asserted": "False",
-                "paths": [
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-                    "source_token": "CD127",
-                    "tokens": [
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-                  },
-                  {
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-                    "source_token": "CDW127",
-                    "tokens": [
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-            ]
-          },
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-          "evidence_links": [
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-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
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-          ]
-        }
-      ],
-      "mapping_status": "proposed"
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-    {
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-      "abbreviation": "CD4+ TCRgd Tem",
-      "label": "CD4+ effector memory gamma/delta T cell",
-      "parent": "CD4+ TCRgd T cell",
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-      "profile_changed": false,
-      "tokens": [
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-        "CD123",
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-        "CD15",
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-        "CD19",
-        "CD20",
-        "CD33",
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-        "CD66b",
-        "HLA-DR"
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-        "OLS CL identifier": "",
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-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
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-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000098",
-      "sheet_row": 99,
-      "abbreviation": "CD8+ Tem",
-      "label": "CD8+ effector memory T cell",
-      "parent": "CD8+ T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
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-        "CD123",
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-        "CD15",
-        "CD16",
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-        "CD20",
-        "CD33",
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-        "CD66b",
-        "HLA-DR"
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-        "WB or PBMC": "",
-        "Parent": "CD8+ T cell",
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-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
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-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
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-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000099",
-      "sheet_row": 100,
-      "abbreviation": "CD8+ TCRab Tem",
-      "label": "CD8+  effector memory alpha/beta T cell",
-      "parent": "CD8+ TCRab T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
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-        "CD66b",
-        "HLA-DR"
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-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "CD8+ TCRab T cell",
-        "Abbreviation": "CD8+ TCRab Tem ",
-        "Full Name": "CD8+  effector memory alpha/beta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
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-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
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-      "mappings": [
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-          "legacy_subject_id": "SOULCAP:CD8+_TCRab_Tem",
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-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
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-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
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-                "column": "Required exclusion",
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-                "column": "Required exclusion",
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-              {
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-              "CD25",
-              "CD4",
-              "CD45",
-              "CD45RA",
-              "CD45RO",
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-              "CDW127",
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-                "pr": "PR:000001004",
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-                    "via": "exact_alias",
-                    "source_token": "CD4",
-                    "tokens": [
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-                  },
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-                    "pr": "PR:000001006",
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-                "pr": "PR:000001203",
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-                    "source_token": "CD197",
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-                  },
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-                "pr": "PR:000001380",
-                "asserted": "False",
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-                    "source_token": "CD25",
-                    "tokens": [
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-                    "pr": "PR:000001006",
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-                "sense": "positive",
-                "pr": "PR:000001084",
-                "asserted": "False",
-                "paths": [
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-                    "source_token": "CD8A",
-                    "tokens": [
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-                  },
-                  {
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-                    "source_token": "CD8A",
-                    "tokens": [
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-                  }
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-                "pr": "PR:000001869",
-                "asserted": "False",
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-                    "source_token": "CD127",
-                    "tokens": [
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-                  },
-                  {
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-                    "pr": "PR:000001869",
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-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000025402",
-                "asserted": "False",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000025403",
-                "asserted": "False",
-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
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-              }
-            ]
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-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
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-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000100",
-      "sheet_row": 101,
-      "abbreviation": "CD8+ TCRgd Tem",
-      "label": "CD8+ effector memory gamma/delta T cell",
-      "parent": "CD8+ TCRgd T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "no",
-        "WB or PBMC": "",
-        "Parent": "CD8+ TCRgd T cell",
-        "Abbreviation": "CD8+ TCRgd Tem",
-        "Full Name": "CD8+ effector memory gamma/delta T cell ",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000101",
-      "sheet_row": 102,
-      "abbreviation": "Temra",
-      "label": "CD45RA+ effector memory alpha/beta and gamma/delta T cell",
-      "parent": "T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "T cell",
-        "Abbreviation": "Temra",
-        "Full Name": "CD45RA+ effector memory alpha/beta and gamma/delta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000102",
-      "sheet_row": 103,
-      "abbreviation": "CD4+ Temra",
-      "label": "CD4+ CD45RA+ effector memory alpha/beta and gamma/delta T cell",
-      "parent": "CD4+ T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "CD4+ T cell",
-        "Abbreviation": "CD4+ Temra",
-        "Full Name": "CD4+ CD45RA+ effector memory alpha/beta and gamma/delta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000103",
-      "sheet_row": 104,
-      "abbreviation": "CD4+ TCRab Temra",
-      "label": "CD4+ CD45RA+ effector memory alpha/beta T cell",
-      "parent": "CD4 TCRab T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "CD4 TCRab T cell",
-        "Abbreviation": "CD4+ TCRab Temra",
-        "Full Name": "CD4+ CD45RA+ effector memory alpha/beta T cell ",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000103",
-          "legacy_subject_id": "SOULCAP:CD4+_TCRab_Temra",
-          "abbreviation": "CD4+ TCRab Temra",
-          "subject_label": "CD4+ CD45RA+ effector memory alpha/beta T cell",
-          "cl_id": "CL:4030002",
-          "cl_label": "effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified. No CD8+-specific counterpart with this 'terminally differentiated' qualifier was found — see gaps.tsv.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 81,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ],
-      "mapping_status": "proposed"
-    },
-    {
-      "subject_id": "SOULCAP:SC000104",
-      "sheet_row": 105,
-      "abbreviation": "CD4+ TCRgd Temra",
-      "label": "CD4+ CD45RA+ effector memory gamma/delta T cell",
-      "parent": "CD4+ TCRgd T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "no",
-        "WB or PBMC": "",
-        "Parent": "CD4+ TCRgd T cell",
-        "Abbreviation": "CD4+ TCRgd Temra",
-        "Full Name": "CD4+ CD45RA+ effector memory gamma/delta T cell ",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000105",
-      "sheet_row": 106,
-      "abbreviation": "CD8+ Temra",
-      "label": "CD8+ CD45RA+ effector memory alpha/beta and gamma/delta T cell",
-      "parent": "CD8+ T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "CD8+ T cell",
-        "Abbreviation": "CD8+ Temra",
-        "Full Name": "CD8+ CD45RA+ effector memory alpha/beta and gamma/delta T cell",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000106",
-      "sheet_row": 107,
-      "abbreviation": "CD8+ TCRab Temra",
-      "label": "CD8+ CD45RA+ effector memory alpha/beta T cell",
-      "parent": "CD8+ TCRab T cell",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "CD8+ TCRab T cell",
-        "Abbreviation": "CD8+ TCRab Temra",
-        "Full Name": "CD8+ CD45RA+ effector memory alpha/beta T cell ",
-        "synonym": "",
-        "Type of Match": "Exact",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000107",
-      "sheet_row": 108,
-      "abbreviation": "T helper",
-      "label": "T helper",
-      "parent": "TCRab",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab+|TCRgd-)  (TCRVa24-Ja18|TCRVa24|CD1d-a-GalCer Tetramer) TCRVb11 (TCRVa7.2|MR1 Tetramer) CD161 CD4 CD8 (CD183|CXCR3) (CD185|CXCR5) (CD194|CCR4) (CD196|CCR6) ",
-          "error": "mixed '|' and space in a group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "TCRab",
-        "Abbreviation": "T helper",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-)  (TCRVa24-Ja18|TCRVa24|CD1d-a-GalCer Tetramer) TCRVb11 (TCRVa7.2|MR1 Tetramer) CD161 CD4 CD8 (CD183|CXCR3) (CD185|CXCR5) (CD194|CCR4) (CD196|CCR6) ",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000108",
-      "sheet_row": 109,
-      "abbreviation": "T cytotoxic",
-      "label": "T cytotoxic",
-      "parent": "TCRab",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "TCRab",
-        "Abbreviation": "T cytotoxic",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123- ",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000109",
-      "sheet_row": 110,
-      "abbreviation": "ConT Treg-like",
-      "label": "ConT Treg-like",
-      "parent": "CD4 ConT",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]- CD4+ CD25+ CD127lo/-",
-          "error": "mixed '|' and space in a group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "CD4 ConT",
-        "Abbreviation": "ConT Treg-like",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]- CD4+ CD25+ CD127lo/-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000110",
-      "sheet_row": 111,
-      "abbreviation": "ConT Tfh-like",
-      "label": "ConT Tfh-like",
-      "parent": "CD4 ConT",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]-  CD4+ [CD25+ CD127lo/-]- CD185+ ",
-          "error": "mixed '|' and space in a group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "CD4 ConT",
-        "Abbreviation": "ConT Tfh-like",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]-  CD4+ [CD25+ CD127lo/-]- CD185+ ",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000111",
-      "sheet_row": 112,
-      "abbreviation": "Th1-like",
-      "label": "Th1-like",
-      "parent": "CD4 ConT",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]-  CD4+ [CD25+ CD127lo/-]- CD185- CD183+ CD196- CD194-",
-          "error": "mixed '|' and space in a group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "CD4 ConT",
-        "Abbreviation": "Th1-like",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]-  CD4+ [CD25+ CD127lo/-]- CD185- CD183+ CD196- CD194-",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "IFNg+",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000112",
-      "sheet_row": 113,
-      "abbreviation": "Th2-like",
-      "label": "Th2-like",
-      "parent": "CD4 ConT",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]-  CD4+ [CD25+ CD127lo/-]- CD185- CD183- CD196- CD194+ CD294+",
-          "error": "mixed '|' and space in a group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD294",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR",
-        "IL-13",
-        "IL-4",
-        "IL-5"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "CD4 ConT",
-        "Abbreviation": "Th2-like",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]-  CD4+ [CD25+ CD127lo/-]- CD185- CD183- CD196- CD194+ CD294+",
-        "Ideal phenotypic markers": "CD294+ [IL-4+|IL-5+|IL-13+]",
-        "Nomenclature Notes": "IL-4+",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000113",
-      "sheet_row": 114,
-      "abbreviation": "Th9-like",
-      "label": "Th9-like",
-      "parent": "",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]-  CD4+ [CD25+ CD127lo/-]- CD185- CD183- CD196- CD194+ ",
-          "error": "mixed '|' and space in a group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD198",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR",
-        "IL-9"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "Th9-like",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]-  CD4+ [CD25+ CD127lo/-]- CD185- CD183- CD196- CD194+ ",
-        "Ideal phenotypic markers": "CD198+ IL-9+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000114",
-      "sheet_row": 115,
-      "abbreviation": "Th17-like",
-      "label": "Th17-like",
-      "parent": "CD4 ConT",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]- CD4+ [CD25+ CD127lo/-]- CD185- CD183- CD196+ CD194+/- ",
-          "error": "mixed '|' and space in a group"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD161",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR",
-        "IL-17a"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "CD4 ConT",
-        "Abbreviation": "Th17-like",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]- CD4+ [CD25+ CD127lo/-]- CD185- CD183- CD196+ CD194+/- ",
-        "Ideal phenotypic markers": "CD161+ IL-17a+",
-        "Nomenclature Notes": "IL-17a+",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000115",
-      "sheet_row": 116,
-      "abbreviation": "CD4 PanT helper",
-      "label": "CD4 PanT helper",
-      "parent": "CD4/CD8 PanT",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CCR4",
-        "CCR6",
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD183",
-        "CD185",
-        "CD19",
-        "CD194",
-        "CD196",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "CXCR3",
-        "CXCR5",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "CD4/CD8 PanT",
-        "Abbreviation": "CD4 PanT helper",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ CD4+ CD8- (CD183|CXCR3) (CD185|CXCR5) (CD194|CCR4) (CD196|CCR6) ",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000116",
-      "sheet_row": 117,
-      "abbreviation": "Th1-like",
-      "label": "Th1-like",
-      "parent": "",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD183",
-        "CD185",
-        "CD19",
-        "CD194",
-        "CD196",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "HLA-DR",
-        "IFNg",
-        "IL-13",
-        "IL-4",
-        "IL-5"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "Th1-like",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "Surface Only",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ CD4+ CD8- CD183+ CD185- CD194- CD196-",
-        "Ideal phenotypic markers": "IFNg+ IL-4- IL-5- IL-13-",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000117",
-      "sheet_row": 118,
-      "abbreviation": "Th2-like",
-      "label": "Th2-like",
-      "parent": "",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD183",
-        "CD185",
-        "CD19",
-        "CD194",
-        "CD196",
-        "CD20",
-        "CD294",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "HLA-DR",
-        "IL-13",
-        "IL-4",
-        "IL-5"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "Th2-like",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ CD4+ CD8- CD183- CD185- CD194+ CD196-",
-        "Ideal phenotypic markers": "CD294+ [IL-4+|IL-5+|IL-13+]",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000118",
-      "sheet_row": 119,
-      "abbreviation": "Th9-like",
-      "label": "Th9-like",
-      "parent": "",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD183",
-        "CD185",
-        "CD19",
-        "CD194",
-        "CD196",
-        "CD198",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "HLA-DR",
-        "IL-9"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "Th9-like",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ CD4+ CD8- CD183- CD185- CD194+ CD196-",
-        "Ideal phenotypic markers": "CD198+ IL-9+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000119",
-      "sheet_row": 120,
-      "abbreviation": "Th17-like",
-      "label": "Th17-like",
-      "parent": "",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD183",
-        "CD185",
-        "CD19",
-        "CD194",
-        "CD196",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "HLA-DR",
-        "IL-17a"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "Th17-like",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ CD4+ CD8- CD183- CD185- CD194+/- CD196+",
-        "Ideal phenotypic markers": "IL-17a+",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000120",
-      "sheet_row": 121,
-      "abbreviation": "Tfh",
-      "label": "Tfh",
-      "parent": "",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "Tfh",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000121",
-      "sheet_row": 122,
-      "abbreviation": "CD4 PanT Treg",
-      "label": "CD4 PanT Treg",
-      "parent": "CD4/CD8 PanT",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD127",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD25",
-        "CD3",
-        "CD33",
-        "CD4",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "CD8",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "",
-        "WB or PBMC": "",
-        "Parent": "CD4/CD8 PanT",
-        "Abbreviation": "CD4 PanT Treg",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ CD4+ CD8- CD127lo/- CD25+ ",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000122",
-      "sheet_row": 123,
-      "abbreviation": "Vg9 Vd2",
-      "label": "Vg9 Vd2",
-      "parent": "TCRgd",
-      "specimen": "",
-      "errors": [],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD3",
-        "CD33",
-        "CD45",
-        "CD64",
-        "CD66b",
-        "HLA-DR",
-        "TCR",
-        "TCRVd2",
-        "TCRVg9",
-        "TCRab",
-        "TCRgd",
-        "V",
-        "delta1"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRgd",
-        "Abbreviation": "Vg9 Vd2",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) TCRVd2+ TCRVg9+",
-        "Ideal phenotypic markers": "TCR V delta1-",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000123",
-      "sheet_row": 124,
-      "abbreviation": "Vd2",
-      "label": "Vd2",
-      "parent": "TCRgd",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 2+ TCR V gamma 9- TCR Vd1-",
-          "error": "invalid marker token '2+'"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR",
-        "TCR",
-        "V",
-        "delta1"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRgd",
-        "Abbreviation": "Vd2",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 2+ TCR V gamma 9- TCR Vd1-",
-        "Ideal phenotypic markers": "TCR V delta1-",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000124",
-      "sheet_row": 125,
-      "abbreviation": "Vd3",
-      "label": "Vd3",
-      "parent": "TCRgd",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 1- TCR V delta 2- TCR V gamma 9- ",
-          "error": "invalid marker token '1-'"
-        },
-        {
-          "column": "Ideal phenotypic markers",
-          "expression": "TCR V gamma 9+/-",
-          "error": "invalid marker token '9+/-'"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "no",
-        "WB or PBMC": "",
-        "Parent": "TCRgd",
-        "Abbreviation": "Vd3",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 1- TCR V delta 2- TCR V gamma 9- ",
-        "Ideal phenotypic markers": "TCR V gamma 9+/-",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000125",
-      "sheet_row": 126,
-      "abbreviation": "Vg9 Vd1",
-      "label": "Vg9 Vd1",
-      "parent": "",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 1+ TCR V delta 2- TCR V gamma 9+",
-          "error": "invalid marker token '1+'"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "",
-        "Abbreviation": "Vg9 Vd1",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 1+ TCR V delta 2- TCR V gamma 9+",
-        "Ideal phenotypic markers": "",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000126",
-      "sheet_row": 127,
-      "abbreviation": "Vd1",
-      "label": "Vd1",
-      "parent": "TCRgd",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 1+ TCR V delta 2- TCR V gamma 9+/-",
-          "error": "invalid marker token '1+'"
-        },
-        {
-          "column": "Ideal phenotypic markers",
-          "expression": " TCR V delta 2- TCR V gamma 9+/-",
-          "error": "invalid marker token '2-'"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
-      ],
-      "profile": {
-        "Ready for OLS": "yes",
-        "WB or PBMC": "",
-        "Parent": "TCRgd",
-        "Abbreviation": "Vd1",
-        "Full Name": "",
-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
-        "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD16-",
-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 1+ TCR V delta 2- TCR V gamma 9+/-",
-        "Ideal phenotypic markers": " TCR V delta 2- TCR V gamma 9+/-",
-        "Nomenclature Notes": "",
-        "CL Mapping Notes": ""
-      },
-      "mappings": [],
-      "mapping_status": "no_proposal"
-    },
-    {
-      "subject_id": "SOULCAP:SC000127",
-      "sheet_row": 128,
-      "abbreviation": "Vg9",
-      "label": "Vg9",
-      "parent": "TCRgd",
-      "specimen": "",
-      "errors": [
-        {
-          "column": "Required phenotypic markers",
-          "expression": "CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 1- TCR V delta 2- TCR V gamma 9+ ",
-          "error": "invalid marker token '1-'"
-        },
-        {
-          "column": "Ideal phenotypic markers",
-          "expression": " TCR V delta 1- TCR V delta 2- ",
-          "error": "invalid marker token '1-'"
-        }
-      ],
-      "profile_changed": false,
-      "tokens": [
-        "CD11c",
-        "CD123",
-        "CD14",
-        "CD15",
-        "CD16",
-        "CD19",
-        "CD20",
-        "CD33",
-        "CD64",
-        "CD66b",
-        "HLA-DR"
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-      "profile": {
-        "Ready for OLS": "no",
-        "WB or PBMC": "",
-        "Parent": "TCRgd",
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-        "synonym": "",
-        "Type of Match": "",
-        "OLS CL identifier": "",
-        "Required exclusion": "(CD14-|CD33-|CD64-) (CD19-|CD20-) CD123-",
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-        "Required phenotypic markers": "CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 1- TCR V delta 2- TCR V gamma 9+ ",
-        "Ideal phenotypic markers": " TCR V delta 1- TCR V delta 2- ",
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-        "CL Mapping Notes": ""
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-      "mappings": [],
-      "mapping_status": "no_proposal"
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-  ],
-  "mappings": [
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-      "subject_id": "SOULCAP:SC000001",
-      "legacy_subject_id": "SOULCAP:NK",
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-      "subject_label": "Natural Killer Cell",
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-      "cl_label": "natural killer cell",
-      "match_type": "Exact",
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-      "review_status": "needs_review",
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-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
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-                "sense": "negative",
-                "asserted": "True"
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-          {
-            "column": "Required exclusion",
-            "clause": "CD19:negative",
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-            "axioms": [
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-                "pr": "PR:000001002",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "False"
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-            "column": "Required exclusion",
-            "clause": "CD34:negative"
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-          {
-            "column": "Required exclusion",
-            "clause": "CD3:negative"
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-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
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-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
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-          {
-            "column": "Ideal exclusion",
-            "clause": "CD123:negative"
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-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(CD56:positive OR CD56:high)"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD127:negative"
-          },
-          {
-            "column": "Ideal phenotypic markers",
-            "clause": "(CD33:negative OR CD64:negative)"
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-        "literature_evidence": "",
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-                "pr": "PR:000001002",
-                "tokens": [
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-            "sense": "negative",
-            "pr": "PR:000001020",
-            "asserted": "False",
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-                "source_token": "CD3E",
-                "tokens": [
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-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
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-          {
-            "sense": "negative",
-            "pr": "PR:000001289",
-            "asserted": "True",
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-                "via": "exact_alias",
-                "source_token": "CD20",
-                "tokens": [
-                  "CD20"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001289",
-                "tokens": [
-                  "CD20"
-                ]
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-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001889",
-            "asserted": "True",
-            "paths": [
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-                "via": "exact_alias",
-                "source_token": "CD14",
-                "tokens": [
-                  "CD14"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001889",
-                "tokens": [
-                  "CD14"
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-              }
-            ]
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-        ]
-      },
-      "registry_row": 2,
-      "evidence_links": [
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-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
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-      ]
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-    {
-      "subject_id": "SOULCAP:SC000002",
-      "legacy_subject_id": "SOULCAP:NK2",
-      "abbreviation": "NK2",
-      "subject_label": "Natural Killer Cell 2",
-      "cl_id": "CL:0000938",
-      "cl_label": "CD16-negative, CD56-bright natural killer cell, human",
-      "match_type": "Exact",
-      "uncertain": false,
-      "review_status": "needs_review",
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-      "note": "",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
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-        "matched": [
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-            "column": "Required exclusion",
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-            "axioms": [
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-          {
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-            "axioms": [
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-                "pr": "PR:000001002",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "False"
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-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD56:high",
-            "assertion": "direct",
-            "axioms": [
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-                "pr": "PR:000001024",
-                "relation": "RO:0015015",
-                "sense": "high",
-                "asserted": "True"
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-        "gaps": [
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-            "column": "Required exclusion",
-            "clause": "CD34:negative"
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-          {
-            "column": "Required exclusion",
-            "clause": "CD3:negative"
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-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
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-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
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-          {
-            "column": "Ideal exclusion",
-            "clause": "CD123:negative"
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-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
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-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD127:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(CD16:negative OR CD16:low)"
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-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD57:negative"
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-        "untested_cl_markers": [
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-          "CD3E",
-          "CD84"
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-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "a9e05f94e58b7fb289cf2f39044e4e9725e26448a3cd5681102b4c6d61ce1b72",
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-        "sheet_confirmation": "not_recorded",
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-        "resolution_evidence": [
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-            "sense": "high",
-            "pr": "PR:000001024",
-            "asserted": "True",
-            "paths": [
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-                "via": "exact_alias",
-                "source_token": "CD56",
-                "tokens": [
-                  "CD56"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001024",
-                "tokens": [
-                  "CD56"
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-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001002",
-            "asserted": "False",
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-                "via": "exact_alias",
-                "source_token": "CD19",
-                "tokens": [
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-                "source_token": "CD3E",
-                "tokens": [
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-                "via": "exact_alias",
-                "source_token": "CD3E",
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-            "pr": "PR:000001289",
-            "asserted": "False",
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-                "source_token": "CD20",
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-            "pr": "PR:000001483",
-            "asserted": "True",
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-          {
-            "sense": "negative",
-            "pr": "PR:000002015",
-            "asserted": "True",
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-          {
-            "sense": "positive",
-            "pr": "PR:000001319",
-            "asserted": "True",
-            "paths": [
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-                "via": "exact_alias",
-                "source_token": "CD84",
-                "tokens": [
-                  "CD84"
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-      "legacy_subject_id": "SOULCAP:CTNK",
-      "abbreviation": "CTNK",
-      "subject_label": "Cytotoxic Natural Killer Cell",
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-            "asserted": "True",
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-            "sense": "positive",
-            "pr": "PR:000001483",
-            "asserted": "True",
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-      "note": "CL does not distinguish CD57 status within this subtype.",
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-            "column": "Required phenotypic markers",
-            "clause": "CD57:negative"
-          }
-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [
-          "CD20",
-          "CD3E"
-        ],
-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "f05210befba803c20f60f0d68ce4bb9628c48dcb56332edbfcec30611126dea5",
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-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": [
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-            "sense": "low",
-            "pr": "PR:000001024",
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-                "source_token": "CD56",
-                "tokens": [
-                  "CD56"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001024",
-                "tokens": [
-                  "CD56"
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-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001002",
-            "asserted": "False",
-            "paths": [
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-                "via": "exact_alias",
-                "source_token": "CD19",
-                "tokens": [
-                  "CD19"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001002",
-                "tokens": [
-                  "CD19"
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-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001020",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
-                ]
-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001289",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD20",
-                "tokens": [
-                  "CD20"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001289",
-                "tokens": [
-                  "CD20"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001889",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD14",
-                "tokens": [
-                  "CD14"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001889",
-                "tokens": [
-                  "CD14"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000002015",
-            "asserted": "True",
-            "paths": []
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001483",
-            "asserted": "True",
-            "paths": []
-          }
-        ]
-      },
-      "registry_row": 5,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000005",
-      "legacy_subject_id": "SOULCAP:NK3",
-      "abbreviation": "NK3",
-      "subject_label": "Natural Killer Cell 3",
-      "cl_id": "CL:0000939",
-      "cl_label": "CD16-positive, CD56-dim natural killer cell, human",
-      "match_type": "Broad",
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-      "review_status": "needs_review",
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-      "note": "CL does not distinguish CD57 status within this subtype.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "partial_support",
-        "matched": [
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-            "column": "Required exclusion",
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-            "axioms": [
-              {
-                "pr": "PR:000001889",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "False"
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-            ]
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD19:negative",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001002",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "False"
-              }
-            ]
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD56:positive",
-            "assertion": "direct",
-            "axioms": [
-              {
-                "pr": "PR:000001024",
-                "relation": "RO:0015016",
-                "sense": "low",
-                "asserted": "True"
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-            ]
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-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "CD34:negative"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD3:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD123:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD127:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD16:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD57:positive"
-          }
-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [
-          "CD20",
-          "CD3E"
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-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "6a604e667984630b654916095b7e5468c3ffd2c44e5e8cdc480cec67437b2161",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": [
-          {
-            "sense": "low",
-            "pr": "PR:000001024",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD56",
-                "tokens": [
-                  "CD56"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001024",
-                "tokens": [
-                  "CD56"
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-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001002",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD19",
-                "tokens": [
-                  "CD19"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001002",
-                "tokens": [
-                  "CD19"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001020",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
-                ]
-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001289",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD20",
-                "tokens": [
-                  "CD20"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001289",
-                "tokens": [
-                  "CD20"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001889",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD14",
-                "tokens": [
-                  "CD14"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001889",
-                "tokens": [
-                  "CD14"
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-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000002015",
-            "asserted": "True",
-            "paths": []
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001483",
-            "asserted": "True",
-            "paths": []
-          }
-        ]
-      },
-      "registry_row": 6,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000006",
-      "legacy_subject_id": "SOULCAP:ILCp",
-      "abbreviation": "ILCp",
-      "subject_label": "Innate Lymphoid Cell Progenitor",
-      "cl_id": "CL:0001074",
-      "cl_label": "CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human",
-      "match_type": "Broad",
-      "uncertain": true,
-      "review_status": "needs_review",
-      "evidence_override": "",
-      "note": "SOULCAP profile does not test CD34; CL:0001073 (CD34-negative) and CL:0001082 (immature innate lymphoid cell) are equally marker-consistent alternatives, not ruled out.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "partial_support",
-        "matched": [
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-            "column": "Required phenotypic markers",
-            "clause": "CD56:positive",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001024",
-                "relation": "RO:0002104",
-                "sense": "positive",
-                "asserted": "False"
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-            ]
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD117:positive",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000002065",
-                "relation": "RO:0002104",
-                "sense": "positive",
-                "asserted": "False"
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-          }
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-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
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-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD3:negative"
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-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD127:positive"
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-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD294:negative"
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-        "untested_cl_markers": [
-          "CD19",
-          "CD34",
-          "CD3E"
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-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "03443463d5f102ae603565b7efde6d5b2de1f1f9c96016ecffdf886dd673995e",
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-        "sheet_confirmation": "not_recorded",
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-        "resolution_evidence": [
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-            "sense": "negative",
-            "pr": "PR:000001002",
-            "asserted": "False",
-            "paths": [
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-                "via": "exact_alias",
-                "source_token": "CD19",
-                "tokens": [
-                  "CD19"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001002",
-                "tokens": [
-                  "CD19"
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-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001020",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
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-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
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-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001003",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD34",
-                "tokens": [
-                  "CD34"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001003",
-                "tokens": [
-                  "CD34"
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-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001024",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD56",
-                "tokens": [
-                  "CD56"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001024",
-                "tokens": [
-                  "CD56"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000002065",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD117",
-                "tokens": [
-                  "CD117"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000002065",
-                "tokens": [
-                  "CD117"
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-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:P10721",
-            "asserted": "True",
-            "paths": []
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:P13591",
-            "asserted": "True",
-            "paths": []
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:P28906",
-            "asserted": "True",
-            "paths": []
-          }
-        ]
-      },
-      "registry_row": 7,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
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-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000007",
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-      "subject_label": "Innate Lymphoid Cell",
-      "cl_id": "CL:0001065",
-      "cl_label": "innate lymphoid cell",
-      "match_type": "Exact",
-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, not CL-marker-supported.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "partial_support",
-        "matched": [
-          {
-            "column": "Required exclusion",
-            "clause": "CD19:negative",
-            "assertion": "direct",
-            "axioms": [
-              {
-                "pr": "PR:000001002",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "True"
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-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
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-          {
-            "column": "Required exclusion",
-            "clause": "CD34:negative"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD3:negative"
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-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD123:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD127:positive"
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-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [
-          "CD3E"
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-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "2382ffa8b1693854f19ee2104691b9f0a0c23f6e976b56d1c507692da08d12fc",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": [
-          {
-            "sense": "negative",
-            "pr": "PR:000001002",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD19",
-                "tokens": [
-                  "CD19"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001002",
-                "tokens": [
-                  "CD19"
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-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001020",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
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-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
-                ]
-              }
-            ]
-          }
-        ]
-      },
-      "registry_row": 8,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000008",
-      "legacy_subject_id": "SOULCAP:ILC1",
-      "abbreviation": "ILC1",
-      "subject_label": "Innate Lymphoid Cell 1",
-      "cl_id": "CL:0001067",
-      "cl_label": "group 1 innate lymphoid cell",
-      "match_type": "Exact",
-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only. No human-specific CL term exists for group 1 (unlike group 2/3); filed as CL gap, repo issue #14.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "partial_support",
-        "matched": [
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-            "column": "Required exclusion",
-            "clause": "CD19:negative",
-            "assertion": "inferred",
-            "axioms": [
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-                "pr": "PR:000001002",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "False"
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-            ]
-          }
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-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
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-          {
-            "column": "Required exclusion",
-            "clause": "CD34:negative"
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-          {
-            "column": "Required exclusion",
-            "clause": "CD3:negative"
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-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
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-          {
-            "column": "Ideal exclusion",
-            "clause": "CD123:negative"
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-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
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-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD127:positive"
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-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD56:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD117:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD294:negative"
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-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [
-          "CD3E"
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-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "0a749f50550a7edd93adce27f94a7302c0dbc59107a2eaae2cf44d03133a6568",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": [
-          {
-            "sense": "negative",
-            "pr": "PR:000001002",
-            "asserted": "False",
-            "paths": [
-              {
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-              },
-              {
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-                "tokens": [
-                  "CD19"
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-              }
-            ]
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-            "pr": "PR:000001020",
-            "asserted": "False",
-            "paths": [
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-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
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-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
-                ]
-              }
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-          }
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-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
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-      "abbreviation": "ILC2",
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-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
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-            "column": "Required phenotypic markers",
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-          {
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-          "CD3E",
-          "CDW127"
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-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
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-            "pr": "PR:000001002",
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-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
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-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
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-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001380",
-            "asserted": "False",
-            "paths": [
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-                "via": "exact_alias",
-                "source_token": "CD25",
-                "tokens": [
-                  "CD25"
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-                "via": "pro_id",
-                "pr": "PR:000001380",
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-          },
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-            "sense": "positive",
-            "pr": "PR:000001869",
-            "asserted": "False",
-            "paths": [
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-                "via": "exact_alias",
-                "source_token": "CD127",
-                "tokens": [
-                  "CD127"
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-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CDW127",
-                "tokens": [
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-                "via": "pro_id",
-                "pr": "PR:000001869",
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-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001874",
-            "asserted": "False",
-            "paths": []
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001941",
-            "asserted": "False",
-            "paths": []
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:P01589",
-            "asserted": "True",
-            "paths": []
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:P16871",
-            "asserted": "True",
-            "paths": [
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-                "via": "exact_alias",
-                "source_token": "CDW127",
-                "tokens": [
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-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:P23771",
-            "asserted": "True",
-            "paths": []
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:Q12918",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD161",
-                "tokens": [
-                  "CD161"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:Q12918",
-                "tokens": [
-                  "CD161"
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-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:Q9Y5Y4",
-            "asserted": "True",
-            "paths": [
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-                "via": "exact_alias",
-                "source_token": "CD294",
-                "tokens": [
-                  "CD294"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:Q9Y5Y4",
-                "tokens": [
-                  "CD294"
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-        ]
-      },
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-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
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-    },
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-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
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-                "source_token": "CD19",
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-          },
-          {
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-            "asserted": "False",
-            "paths": []
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:P16871",
-            "asserted": "True",
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-                "via": "exact_alias",
-                "source_token": "CDW127",
-                "tokens": [
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-          }
-        ]
-      },
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-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
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-      "subject_label": "Conventional Dendritic Cell",
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-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "partial_support",
-        "matched": [
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-            "axioms": [
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-                "pr": "PR:000001024",
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-                "sense": "negative",
-                "asserted": "False"
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-            ]
-          },
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-                "asserted": "True"
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-          },
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-            "column": "Ideal exclusion",
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-          {
-            "column": "Ideal exclusion",
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-            "column": "Required phenotypic markers",
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-        "untested_cl_markers": [
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-          "CD34",
-          "CD3E"
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-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
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-        "sheet_confirmation": "not_recorded",
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-            "pr": "PR:000001013",
-            "asserted": "True",
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-                "source_token": "CD11",
-                "tokens": [
-                  "CD11"
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-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD11C",
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-            "paths": [
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-                "via": "exact_alias",
-                "source_token": "CD19",
-                "tokens": [
-                  "CD19"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001002",
-                "tokens": [
-                  "CD19"
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-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001003",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD34",
-                "tokens": [
-                  "CD34"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001003",
-                "tokens": [
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-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001020",
-            "asserted": "False",
-            "paths": [
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-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
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-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
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-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001024",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD56",
-                "tokens": [
-                  "CD56"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001024",
-                "tokens": [
-                  "CD56"
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-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001289",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD20",
-                "tokens": [
-                  "CD20"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001289",
-                "tokens": [
-                  "CD20"
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-              }
-            ]
-          }
-        ]
-      },
-      "registry_row": 12,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000012",
-      "legacy_subject_id": "SOULCAP:cDC1",
-      "abbreviation": "cDC1",
-      "subject_label": "Conventional Dendritic Cell 1",
-      "cl_id": "CL:0002394",
-      "cl_label": "CD141-positive myeloid dendritic cell",
-      "match_type": "Exact",
-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had wrongly assigned cDC1 the same term as cDC2.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "partial_support",
-        "matched": [
-          {
-            "column": "Required exclusion",
-            "clause": "(CD123:not:high OR CD193:negative)",
-            "assertion": "inferred",
-            "axioms": [
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-                "pr": "PR:000001865",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "False"
-              }
-            ]
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "(CD123:not:high OR CD303:negative)",
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-            "axioms": [
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-                "pr": "PR:000001865",
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-                "asserted": "False"
-              }
-            ]
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD19:negative",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001002",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "False"
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-            ]
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD56:negative",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001024",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "False"
-              }
-            ]
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD11C:high",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001013",
-                "relation": "RO:0015015",
-                "sense": "high",
-                "asserted": "False"
-              }
-            ]
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD141:positive",
-            "assertion": "direct",
-            "axioms": [
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-                "pr": "PR:000002105",
-                "relation": "RO:0002104",
-                "sense": "positive",
-                "asserted": "True"
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-            ]
-          }
-        ],
-        "contradictions": [],
-        "gaps": [
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-            "column": "Required exclusion",
-            "clause": "CD14:negative"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD16:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD3:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD127:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(CD33:high OR CD64:positive)"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "HLA-DR:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD1C:negative"
-          },
-          {
-            "column": "Ideal phenotypic markers",
-            "clause": "CD172A:negative"
-          },
-          {
-            "column": "Ideal phenotypic markers",
-            "clause": "FCER1A:negative"
-          }
-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [
-          "CD11",
-          "CD20",
-          "CD34",
-          "CD3E"
-        ],
-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "26b00ac7a3eecc08344c5062dce97e2ccfd3a591c8a347be9f155b32e0128b25",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": [
-          {
-            "sense": "high",
-            "pr": "PR:000001013",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD11",
-                "tokens": [
-                  "CD11"
-                ]
-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD11C",
-                "tokens": [
-                  "CD11C"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001013",
-                "tokens": [
-                  "CD11C"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001002",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD19",
-                "tokens": [
-                  "CD19"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001002",
-                "tokens": [
-                  "CD19"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001003",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD34",
-                "tokens": [
-                  "CD34"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001003",
-                "tokens": [
-                  "CD34"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001020",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
-                ]
-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001024",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD56",
-                "tokens": [
-                  "CD56"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001024",
-                "tokens": [
-                  "CD56"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001289",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD20",
-                "tokens": [
-                  "CD20"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001289",
-                "tokens": [
-                  "CD20"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001865",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD123",
-                "tokens": [
-                  "CD123"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001865",
-                "tokens": [
-                  "CD123"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000002105",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD141",
-                "tokens": [
-                  "CD141"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000002105",
-                "tokens": [
-                  "CD141"
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-              }
-            ]
-          }
-        ]
-      },
-      "registry_row": 13,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000013",
-      "legacy_subject_id": "SOULCAP:cDC2",
-      "abbreviation": "cDC2",
-      "subject_label": "Conventional Dendritic Cell 2",
-      "cl_id": "CL:0002399",
-      "cl_label": "CD1c-positive myeloid dendritic cell",
-      "match_type": "Exact",
-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed correct by cross-check against cDC1.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "partial_support",
-        "matched": [
-          {
-            "column": "Required exclusion",
-            "clause": "(CD123:not:high OR CD193:negative)",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001865",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "False"
-              }
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-          },
-          {
-            "column": "Required exclusion",
-            "clause": "(CD123:not:high OR CD303:negative)",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001865",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "False"
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-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD19:negative",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001002",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "False"
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-            ]
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD56:negative",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001024",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "False"
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-            ]
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD11C:high",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001013",
-                "relation": "RO:0015015",
-                "sense": "high",
-                "asserted": "False"
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-            ]
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD1C:positive",
-            "assertion": "direct",
-            "axioms": [
-              {
-                "pr": "PR:000002027",
-                "relation": "RO:0002104",
-                "sense": "positive",
-                "asserted": "True"
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-            ]
-          }
-        ],
-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "CD14:negative"
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-          {
-            "column": "Required exclusion",
-            "clause": "CD16:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD3:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD127:negative"
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-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(CD33:high OR CD64:positive)"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "HLA-DR:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(CD141:low OR CD141:negative)"
-          },
-          {
-            "column": "Ideal phenotypic markers",
-            "clause": "CD172A:positive"
-          },
-          {
-            "column": "Ideal phenotypic markers",
-            "clause": "(FCER1A:low OR FCER1A:negative)"
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-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [
-          "CD11",
-          "CD20",
-          "CD34",
-          "CD3E"
-        ],
-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "3e6dc30f6e3ac086a6d06bc8b78c27895cba0f8f343c29a212dd2cb02d6dddee",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": [
-          {
-            "sense": "high",
-            "pr": "PR:000001013",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD11",
-                "tokens": [
-                  "CD11"
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-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD11C",
-                "tokens": [
-                  "CD11C"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001013",
-                "tokens": [
-                  "CD11C"
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-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001002",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD19",
-                "tokens": [
-                  "CD19"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001002",
-                "tokens": [
-                  "CD19"
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-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001003",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD34",
-                "tokens": [
-                  "CD34"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001003",
-                "tokens": [
-                  "CD34"
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-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001020",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
-                ]
-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001024",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD56",
-                "tokens": [
-                  "CD56"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001024",
-                "tokens": [
-                  "CD56"
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-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001289",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD20",
-                "tokens": [
-                  "CD20"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001289",
-                "tokens": [
-                  "CD20"
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-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001865",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD123",
-                "tokens": [
-                  "CD123"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001865",
-                "tokens": [
-                  "CD123"
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-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000002027",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD1C",
-                "tokens": [
-                  "CD1C"
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-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD1C",
-                "tokens": [
-                  "CD1C"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000002027",
-                "tokens": [
-                  "CD1C"
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-              }
-            ]
-          }
-        ]
-      },
-      "registry_row": 14,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000014",
-      "legacy_subject_id": "SOULCAP:pDC",
-      "abbreviation": "pDC",
-      "subject_label": "Plasmacytoid Dendritic Cell",
-      "cl_id": "CL:0001058",
-      "cl_label": "plasmacytoid dendritic cell, human",
-      "match_type": "Exact",
-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only. Sheet's Full Name reads 'Peripheral Dendritic Cell' (likely a typo for 'Plasmacytoid'); not yet corrected at source.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "partial_support",
-        "matched": [
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-            "column": "Ideal exclusion",
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-                "pr": "PR:000001024",
-                "relation": "CL:4030046",
-                "sense": "negative",
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-            "column": "Ideal exclusion",
-            "clause": "CD19:negative",
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-            "axioms": [
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-                "pr": "PR:000001002",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "False"
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-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD14:negative",
-            "assertion": "direct",
-            "axioms": [
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-                "pr": "PR:000001889",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "True"
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-        "gaps": [
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-            "column": "Required exclusion",
-            "clause": "CD3:negative"
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-          {
-            "column": "Ideal exclusion",
-            "clause": "CD127:negative"
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-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD16:negative"
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-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
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-          {
-            "column": "Required phenotypic markers",
-            "clause": "(CD33:low OR CD33:positive OR CD123:high)"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(CD193:negative OR FCER1A:negative OR CD303:positive)"
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-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [
-          "CD11",
-          "CD11C",
-          "CD20",
-          "CD34",
-          "CD3E"
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-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
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-        "profile_sha256": "90a3916e208c3f3f041f7567896fcd45d341337251da243d921d8127b8562d71",
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-        "sheet_confirmation": "not_recorded",
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-        "resolution_evidence": [
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-            "sense": "negative",
-            "pr": "PR:000001002",
-            "asserted": "False",
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-                "via": "exact_alias",
-                "source_token": "CD19",
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-                  "CD19"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001002",
-                "tokens": [
-                  "CD19"
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-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001003",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD34",
-                "tokens": [
-                  "CD34"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001003",
-                "tokens": [
-                  "CD34"
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-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001013",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD11",
-                "tokens": [
-                  "CD11"
-                ]
-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD11C",
-                "tokens": [
-                  "CD11C"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001013",
-                "tokens": [
-                  "CD11C"
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-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001020",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
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-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001024",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD56",
-                "tokens": [
-                  "CD56"
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-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001024",
-                "tokens": [
-                  "CD56"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001289",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD20",
-                "tokens": [
-                  "CD20"
-                ]
-              },
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-      "legacy_subject_id": "SOULCAP:CMo",
-      "abbreviation": "CMo",
-      "subject_label": "Classical Monocyte",
-      "cl_id": "CL:0000860",
-      "cl_label": "classical monocyte",
-      "match_type": "Exact",
-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "sheet_confirmed",
-      "note": "OAK-verified exact label match. CL:0000860 asserts only CCR2 (CD192) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.",
-      "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-      "evidence": {
-        "status": "invalid_profile",
-        "matched": [],
-        "contradictions": [],
-        "gaps": [],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [],
-        "errors": [
-          "Required exclusion: unexpected ')' in group"
-        ],
-        "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-        "literature_evidence": "",
-        "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "4c9436c977492d1ccea66ec05a22925897e6235162061f41dbf8e4e09ac940e3",
-        "sheet_cl_id": "CL:0000860",
-        "sheet_confirmation": "agrees",
-        "sheet_notes": ""
-      },
-      "registry_row": 19,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000019",
-      "legacy_subject_id": "SOULCAP:NCMo",
-      "abbreviation": "NCMo",
-      "subject_label": "Non-classical Monocyte",
-      "cl_id": "CL:0000875",
-      "cl_label": "non-classical monocyte",
-      "match_type": "Exact",
-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "sheet_confirmed",
-      "note": "OAK-verified exact label match. CL:0000875 asserts only CX3CR1 and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.",
-      "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-      "evidence": {
-        "status": "invalid_profile",
-        "matched": [],
-        "contradictions": [],
-        "gaps": [],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [],
-        "errors": [
-          "Required exclusion: unexpected ')' in group"
-        ],
-        "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-        "literature_evidence": "",
-        "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "2ccb34f2fc50e1126131986d487fe42c67bdcacc16330874b67750b017cbeab0",
-        "sheet_cl_id": "CL:0000875",
-        "sheet_confirmation": "agrees",
-        "sheet_notes": ""
-      },
-      "registry_row": 20,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000020",
-      "legacy_subject_id": "SOULCAP:IntMo",
-      "abbreviation": "IntMo",
-      "subject_label": "Intermediate Monocyte",
-      "cl_id": "CL:0002393",
-      "cl_label": "intermediate monocyte",
-      "match_type": "Exact",
-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "sheet_confirmed",
-      "note": "OAK-verified exact label match. CL:0002393 asserts only CCR2 (CD192, negative) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.",
-      "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-      "evidence": {
-        "status": "invalid_profile",
-        "matched": [],
-        "contradictions": [],
-        "gaps": [],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [],
-        "errors": [
-          "Required exclusion: unexpected ')' in group"
-        ],
-        "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-        "literature_evidence": "",
-        "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "aa79f8b8798d9b79b35cd87edef7133ca5b824636f3f05d0dfe1b990d87d97c3",
-        "sheet_cl_id": "CL:0002393",
-        "sheet_confirmation": "agrees",
-        "sheet_notes": ""
-      },
-      "registry_row": 21,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000021",
-      "legacy_subject_id": "SOULCAP:Neutrophil",
-      "abbreviation": "Neutrophil",
-      "subject_label": "Neutrophil",
-      "cl_id": "CL:0000775",
-      "cl_label": "neutrophil",
-      "match_type": "Exact",
-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "",
-      "note": "",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "partial_support",
-        "matched": [
-          {
-            "column": "Required exclusion",
-            "clause": "CD56:negative",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001024",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "False"
-              }
-            ]
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD19:negative",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001002",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "False"
-              }
-            ]
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(CD15:high OR CD66B:positive)",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001332",
-                "relation": "RO:0002104",
-                "sense": "positive",
-                "asserted": "False"
-              }
-            ]
-          }
-        ],
-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "CD3:negative"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "(CD14:low OR CD14:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD123:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD193:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD16:high"
-          },
-          {
-            "column": "Ideal phenotypic markers",
-            "clause": "(CD64:negative OR CD33:positive)"
-          }
-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [
-          "CD11",
-          "CD11B",
-          "CD3E",
-          "CD67",
-          "CD87",
-          "CD8A"
-        ],
-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "6a7f385e7dd5e22ba96aeedb4aa46fb2e6ab411bc046567fac5d0aeb3ea7f587",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": [
-          {
-            "sense": "negative",
-            "pr": "PR:000001002",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD19",
-                "tokens": [
-                  "CD19"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001002",
-                "tokens": [
-                  "CD19"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001020",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
-                ]
-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001024",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD56",
-                "tokens": [
-                  "CD56"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001024",
-                "tokens": [
-                  "CD56"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001084",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD8A",
-                "tokens": [
-                  "CD8A"
-                ]
-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD8A",
-                "tokens": [
-                  "CD8A"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001012",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD11",
-                "tokens": [
-                  "CD11"
-                ]
-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD11B",
-                "tokens": [
-                  "CD11B"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001332",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD66B",
-                "tokens": [
-                  "CD66B"
-                ]
-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD67",
-                "tokens": [
-                  "CD67"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001332",
-                "tokens": [
-                  "CD66B"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001479",
-            "asserted": "True",
-            "paths": []
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001879",
-            "asserted": "True",
-            "paths": []
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001969",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD87",
-                "tokens": [
-                  "CD87"
-                ]
-              }
-            ]
-          }
-        ]
-      },
-      "registry_row": 22,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000022",
-      "legacy_subject_id": "SOULCAP:Eosinophil",
-      "abbreviation": "Eosinophil",
-      "subject_label": "Eosinophil",
-      "cl_id": "CL:0000771",
-      "cl_label": "eosinophil",
-      "match_type": "Exact",
-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "",
-      "note": "CD193 (CCR3) positive is directly asserted (not inferred) on CL:0000771, precisely matching SOULCAP's defining CD193+ requirement — one of the stronger marker-confirmed matches in this set.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "partial_support",
-        "matched": [
-          {
-            "column": "Required exclusion",
-            "clause": "CD56:negative",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001024",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "False"
-              }
-            ]
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD19:negative",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001002",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "False"
-              }
-            ]
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(CD15:high OR CD66B:positive)",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001332",
-                "relation": "RO:0002104",
-                "sense": "positive",
-                "asserted": "False"
-              }
-            ]
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD193:positive",
-            "assertion": "direct",
-            "axioms": [
-              {
-                "pr": "PR:000001255",
-                "relation": "RO:0002104",
-                "sense": "positive",
-                "asserted": "True"
-              }
-            ]
-          }
-        ],
-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "CD3:negative"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "(CD14:low OR CD14:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD123:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD16:negative"
-          },
-          {
-            "column": "Ideal phenotypic markers",
-            "clause": "(CD64:negative OR CD33:positive)"
-          }
-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [
-          "CD11",
-          "CD11B",
-          "CD191",
-          "CD3E",
-          "CD44",
-          "CD67",
-          "CD69",
-          "CD87",
-          "CD8A",
-          "CD9",
-          "CDW44"
-        ],
-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "874205816800964db5c591f96652bdac9d28acef6907b20275b346c4e2cc3524",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": [
-          {
-            "sense": "negative",
-            "pr": "PR:000001002",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD19",
-                "tokens": [
-                  "CD19"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001002",
-                "tokens": [
-                  "CD19"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001020",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
-                ]
-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001024",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD56",
-                "tokens": [
-                  "CD56"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001024",
-                "tokens": [
-                  "CD56"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001084",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD8A",
-                "tokens": [
-                  "CD8A"
-                ]
-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD8A",
-                "tokens": [
-                  "CD8A"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001012",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD11",
-                "tokens": [
-                  "CD11"
-                ]
-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD11B",
-                "tokens": [
-                  "CD11B"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001254",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD191",
-                "tokens": [
-                  "CD191"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001255",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD193",
-                "tokens": [
-                  "CD193"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001255",
-                "tokens": [
-                  "CD193"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001307",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD44",
-                "tokens": [
-                  "CD44"
-                ]
-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CDW44",
-                "tokens": [
-                  "CDW44"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001332",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD66B",
-                "tokens": [
-                  "CD66B"
-                ]
-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD67",
-                "tokens": [
-                  "CD67"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001332",
-                "tokens": [
-                  "CD66B"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001343",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD69",
-                "tokens": [
-                  "CD69"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001969",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD87",
-                "tokens": [
-                  "CD87"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000005178",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD9",
-                "tokens": [
-                  "CD9"
-                ]
-              }
-            ]
-          }
-        ]
-      },
-      "registry_row": 23,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000023",
-      "legacy_subject_id": "SOULCAP:B_cell",
-      "abbreviation": "B cell",
-      "subject_label": "B cell",
-      "cl_id": "CL:0000236",
-      "cl_label": "B cell",
-      "match_type": "Exact",
-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "OLS4 REST search returned zero hits for this exact query; found instead via OAK. CL:0000236 has no marker axioms recorded.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "no_marker_support",
-        "matched": [],
-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD3:negative"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD56:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD127:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD16:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD123:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(CD20:positive OR CD19:positive)"
-          },
-          {
-            "column": "Ideal phenotypic markers",
-            "clause": "CD20:positive"
-          }
-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [],
-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "a0300906ff3acd98f58b8ebb9443d973b9710447d8ab4736aa111ae172b1df78",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": []
-      },
-      "registry_row": 24,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000024",
-      "legacy_subject_id": "SOULCAP:ASC",
-      "abbreviation": "ASC",
-      "subject_label": "Antibody Secreting Cell",
-      "cl_id": "CL:0000946",
-      "cl_label": "antibody secreting cell",
-      "match_type": "Exact",
-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "Lexical match; marker scoring found nothing useful (mouse B220-nomenclature terms scored highest instead).",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "no_marker_support",
-        "matched": [],
-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD3:negative"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD56:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD127:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD16:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD123:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD19:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(CD27:positive OR CD27:high)"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD38:high"
-          },
-          {
-            "column": "Ideal phenotypic markers",
-            "clause": "(CD20:low OR CD20:negative)"
-          }
-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [],
-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "a80b760b7494b5ccacbfeb5822368766f2b27665ee08fea9e8e1f9c303a76c79",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": []
-      },
-      "registry_row": 25,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000025",
-      "legacy_subject_id": "SOULCAP:PB",
-      "abbreviation": "PB",
-      "subject_label": "Plasmablast",
-      "cl_id": "CL:0000980",
-      "cl_label": "plasmablast",
-      "match_type": "Exact",
-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "Lexical match; marker scoring found nothing useful.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "partial_support",
-        "matched": [
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD19:positive",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001002",
-                "relation": "RO:0002104",
-                "sense": "positive",
-                "asserted": "False"
-              }
-            ]
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(CD27:positive OR CD27:high)",
-            "assertion": "direct",
-            "axioms": [
-              {
-                "pr": "PR:000001963",
-                "relation": "RO:0015015",
-                "sense": "high",
-                "asserted": "True"
-              }
-            ]
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD38:high",
-            "assertion": "direct",
-            "axioms": [
-              {
-                "pr": "PR:000001408",
-                "relation": "RO:0015015",
-                "sense": "high",
-                "asserted": "True"
-              }
-            ]
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD138:negative",
-            "assertion": "direct",
-            "axioms": [
-              {
-                "pr": "PR:000001935",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "True"
-              }
-            ]
-          },
-          {
-            "column": "Ideal phenotypic markers",
-            "clause": "(CD20:low OR CD20:negative)",
-            "assertion": "direct",
-            "axioms": [
-              {
-                "pr": "PR:000001289",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "True"
-              }
-            ]
-          }
-        ],
-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD3:negative"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD56:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD127:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD16:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD123:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          }
-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [
-          "CD27L",
-          "CD3E"
-        ],
-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "9863d8716862be947cf0fcd9d032cfb66cc1eb2aa59415522dc05bae36ac21f0",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": [
-          {
-            "sense": "high",
-            "pr": "PR:000001408",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD38",
-                "tokens": [
-                  "CD38"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001408",
-                "tokens": [
-                  "CD38"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "high",
-            "pr": "PR:000001963",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD27",
-                "tokens": [
-                  "CD27"
-                ]
-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD27L",
-                "tokens": [
-                  "CD27L"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001963",
-                "tokens": [
-                  "CD27"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001020",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
-                ]
-              },
-              {
-                "via": "exact_alias",
-                "source_token": "CD3E",
-                "tokens": [
-                  "CD3E"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001289",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD20",
-                "tokens": [
-                  "CD20"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001289",
-                "tokens": [
-                  "CD20"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "negative",
-            "pr": "PR:000001935",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD138",
-                "tokens": [
-                  "CD138"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001935",
-                "tokens": [
-                  "CD138"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001002",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD19",
-                "tokens": [
-                  "CD19"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001002",
-                "tokens": [
-                  "CD19"
-                ]
-              }
-            ]
-          }
-        ]
-      },
-      "registry_row": 26,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000026",
-      "legacy_subject_id": "SOULCAP:PC",
-      "abbreviation": "PC",
-      "subject_label": "Plasma Cell",
-      "cl_id": "CL:0000786",
-      "cl_label": "plasma cell",
-      "match_type": "Exact",
-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "Lexical match; marker scoring found nothing useful.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "partial_support",
-        "matched": [
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD138:positive",
-            "assertion": "direct",
-            "axioms": [
-              {
-                "pr": "PR:000001935",
-                "relation": "RO:0002104",
-                "sense": "positive",
-                "asserted": "True"
-              }
-            ]
-          },
-          {
-            "column": "Ideal phenotypic markers",
-            "clause": "CD20:negative",
-            "assertion": "direct",
-            "axioms": [
-              {
-                "pr": "PR:000001289",
-                "relation": "CL:4030046",
-                "sense": "negative",
-                "asserted": "True"
-              }
-            ]
-          }
-        ],
-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD3:negative"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD56:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD127:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD16:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD123:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD19:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(CD27:positive OR CD27:high)"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD38:high"
-          }
-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [],
-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "6e574209001a2ef071b4ee9221b9c2ac7c15348cb319df7b0eab050ed1ce33d4",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": [
-          {
-            "sense": "negative",
-            "pr": "PR:000001289",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD20",
-                "tokens": [
-                  "CD20"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001289",
-                "tokens": [
-                  "CD20"
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-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001935",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD138",
-                "tokens": [
-                  "CD138"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001935",
-                "tokens": [
-                  "CD138"
-                ]
-              }
-            ]
-          }
-        ]
-      },
-      "registry_row": 27,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000028",
-      "legacy_subject_id": "SOULCAP:T1/T2_B",
-      "abbreviation": "T1/T2 B",
-      "subject_label": "Transitonal B cell 1 and 2",
-      "cl_id": "CL:0000818",
-      "cl_label": "transitional stage B cell",
-      "match_type": "Broad",
-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "SOULCAP combines T1+T2 into one gate; CL keeps CL:0000958 (T1) and CL:0000959 (T2) separate under this parent term. Sheet's Full Name has a typo ('Transitonal').",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "partial_support",
-        "matched": [
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(CD20:positive OR CD19:positive)",
-            "assertion": "direct",
-            "axioms": [
-              {
-                "pr": "PR:000001002",
-                "relation": "RO:0002104",
-                "sense": "positive",
-                "asserted": "False"
-              },
-              {
-                "pr": "PR:000001289",
-                "relation": "RO:0002104",
-                "sense": "positive",
-                "asserted": "True"
-              }
-            ]
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(CD38:high OR CD10:high)",
-            "assertion": "direct",
-            "axioms": [
-              {
-                "pr": "PR:000001408",
-                "relation": "RO:0015015",
-                "sense": "high",
-                "asserted": "True"
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-            ]
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD24:high",
-            "assertion": "direct",
-            "axioms": [
-              {
-                "pr": "PR:000001932",
-                "relation": "RO:0015015",
-                "sense": "high",
-                "asserted": "True"
-              }
-            ]
-          },
-          {
-            "column": "Ideal phenotypic markers",
-            "clause": "CD20:positive",
-            "assertion": "direct",
-            "axioms": [
-              {
-                "pr": "PR:000001289",
-                "relation": "RO:0002104",
-                "sense": "positive",
-                "asserted": "True"
-              }
-            ]
-          }
-        ],
-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD3:negative"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD56:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD127:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD16:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD123:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD27:negative"
-          }
-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [
-          "CD3E"
-        ],
-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "8e6bd76f1ceb75aafb12ce1c9f1f0a727efdb0db0ab1bd88934207cb56b8d23e",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": [
-          {
-            "sense": "high",
-            "pr": "PR:000001408",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD38",
-                "tokens": [
-                  "CD38"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001408",
-                "tokens": [
-                  "CD38"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "high",
-            "pr": "PR:000001932",
-            "asserted": "True",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD24",
-                "tokens": [
-                  "CD24"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001932",
-                "tokens": [
-                  "CD24"
-                ]
-              }
-            ]
-          },
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-            "sense": "positive",
-            "pr": "PR:000001289",
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-                "via": "exact_alias",
-                "source_token": "CD20",
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-          {
-            "sense": "positive",
-            "pr": "PR:000001963",
-            "asserted": "False",
-            "paths": [
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-                "via": "exact_alias",
-                "source_token": "CD27",
-                "tokens": [
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-                "via": "exact_alias",
-                "source_token": "CD27L",
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-                "via": "pro_id",
-                "pr": "PR:000001963",
-                "tokens": [
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-      "registry_row": 41,
-      "evidence_links": [
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-                "sense": "positive",
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-            "column": "Ideal exclusion",
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-          {
-            "column": "Ideal exclusion",
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-            "column": "Required phenotypic markers",
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-          {
-            "column": "Required phenotypic markers",
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-        "profile_sha256": "1a94242804d7d285d6e99a84f940c5920cba588e703bc9807bd7066e7a931273",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": []
-      },
-      "registry_row": 54,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000065",
-      "legacy_subject_id": "SOULCAP:CD4-/CD8-_T_cell",
-      "abbreviation": "CD4-/CD8- T cell",
-      "subject_label": "alpha/beta and gamma/delta CD4- and CD8- T cells",
-      "cl_id": "CL:0000084",
-      "cl_label": "T cell",
-      "match_type": "Broad",
-      "uncertain": true,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "No peripheral (non-thymic) double-negative term spanning both TCR types; only a thymocyte-stage term exists (wrong tissue).",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "no_marker_support",
-        "matched": [],
-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "(CD19:negative OR CD20:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD123:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD16:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD3:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD4:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD8:negative"
-          }
-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [],
-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "81d30ff7dab4278ec39ef4008e2e6cb051865ff423a24182495de6f6150eff6e",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": []
-      },
-      "registry_row": 55,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000068",
-      "legacy_subject_id": "SOULCAP:CD4+/CD8+_TCRab_T_cell",
-      "abbreviation": "CD4+/CD8+ TCRab T cell",
-      "subject_label": "CD4+ and CD8+ alpha/beta T cell",
-      "cl_id": "CL:0000789",
-      "cl_label": "alpha-beta T cell",
-      "match_type": "Broad",
-      "uncertain": true,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "No CD4+CD8+ double-positive alpha-beta term found.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "no_marker_support",
-        "matched": [],
-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "(CD19:negative OR CD20:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD123:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD16:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD3:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(TCRAB:positive OR TCRGD:negative)"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD4:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD8:positive"
-          }
-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [],
-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "03c69fac8ec012810b035a54f82237833b6f4299be38ce9139c761ca28f65d09",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": []
-      },
-      "registry_row": 56,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000069",
-      "legacy_subject_id": "SOULCAP:CD4-/CD8-_TCRab_T_cell",
-      "abbreviation": "CD4-/CD8- TCRab T cell",
-      "subject_label": "CD4- and CD8- alpha/beta T cell",
-      "cl_id": "CL:0000789",
-      "cl_label": "alpha-beta T cell",
-      "match_type": "Broad",
-      "uncertain": true,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "Only CL:0002489 'double negative thymocyte' found — wrong tissue/maturity stage for a blood/PBMC panel.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "no_marker_support",
-        "matched": [],
-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "(CD19:negative OR CD20:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD123:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD16:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD3:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(TCRAB:positive OR TCRGD:negative)"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD4:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD8:negative"
-          }
-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [],
-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "147cd19bfa49697c170198087716cdfac8d82d0db6688150b183bb8e9c0340e5",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": []
-      },
-      "registry_row": 57,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000070",
-      "legacy_subject_id": "SOULCAP:CD4+_TCRgd_T_cell",
-      "abbreviation": "CD4+ TCRgd T cell",
-      "subject_label": "CD4+ gamma/delta T cell",
-      "cl_id": "CL:0000798",
-      "cl_label": "gamma-delta T cell",
-      "match_type": "Broad",
-      "uncertain": true,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "CD4+ gamma-delta T cells are atypical/rare; no CL term found.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "no_marker_support",
-        "matched": [],
-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "(CD19:negative OR CD20:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD123:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD16:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD3:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(TCRAB:negative OR TCRGD:positive)"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD4:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD8:negative"
-          }
-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [],
-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "737860c20417038a9c5b8c687ec9c6acfc02afd4216730694025bb805010eae3",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": []
-      },
-      "registry_row": 58,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000071",
-      "legacy_subject_id": "SOULCAP:CD8+_TCRgd_T_cell",
-      "abbreviation": "CD8+ TCRgd T cell",
-      "subject_label": "CD8+ gamma/delta T cell",
-      "cl_id": "CL:0000798",
-      "cl_label": "gamma-delta T cell",
-      "match_type": "Broad",
-      "uncertain": true,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "No CD8+-specific gamma-delta CL term found.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "no_marker_support",
-        "matched": [],
-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "(CD19:negative OR CD20:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD123:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD16:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD3:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(TCRAB:negative OR TCRGD:positive)"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD4:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD8:positive"
-          }
-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [],
-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "4bdfff88d621b6e25864f108e587296403ce0eb3f750a245df9360950cf11c2a",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": []
-      },
-      "registry_row": 59,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000072",
-      "legacy_subject_id": "SOULCAP:CD4+/CD8+_TCRgd",
-      "abbreviation": "CD4+/CD8+ TCRgd",
-      "subject_label": "CD4+/CD8+ gamma/delta T cell",
-      "cl_id": "CL:0000798",
-      "cl_label": "gamma-delta T cell",
-      "match_type": "Broad",
-      "uncertain": true,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "No CD4+CD8+ double-positive gamma-delta term found.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "no_marker_support",
-        "matched": [],
-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "(CD19:negative OR CD20:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD123:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD16:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD3:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "(TCRAB:negative OR TCRGD:positive)"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD4:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD8:positive"
-          }
-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [],
-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "133eef6f9076e3eb898ce7cacf7933f562be6fbd2f02d633a0eabe79675295e5",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": []
-      },
-      "registry_row": 60,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000046",
-      "legacy_subject_id": "SOULCAP:CD56+_T_cell",
-      "abbreviation": "CD56+ T cell",
-      "subject_label": "CD56+ T cell",
-      "cl_id": "CL:4052055",
-      "cl_label": "mature NK T cell, human",
-      "match_type": "Broad",
-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "partial_support",
-        "matched": [
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD56:positive",
-            "assertion": "inferred",
-            "axioms": [
-              {
-                "pr": "PR:000001024",
-                "relation": "RO:0002104",
-                "sense": "positive",
-                "asserted": "False"
-              }
-            ]
-          }
-        ],
-        "contradictions": [],
-        "gaps": [
-          {
-            "column": "Required exclusion",
-            "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "(CD19:negative OR CD20:negative)"
-          },
-          {
-            "column": "Required exclusion",
-            "clause": "CD123:negative"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "(CD15:negative OR CD66B:negative)"
-          },
-          {
-            "column": "Ideal exclusion",
-            "clause": "CD16:negative"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD45:positive"
-          },
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD3:positive"
-          }
-        ],
-        "ideal_conflicts": [],
-        "untested_cl_markers": [],
-        "errors": [],
-        "lexical_evidence": "",
-        "literature_evidence": "",
-        "curator_evidence": "",
-        "review_status": "needs_review",
-        "resolution_mode": "explicit_marker_policy",
-        "profile_sha256": "63ee8683e94c984697c75d473a3e9d0405de2bafb176fbbb7535c16485178719",
-        "sheet_cl_id": "",
-        "sheet_confirmation": "not_recorded",
-        "sheet_notes": "",
-        "resolution_evidence": [
-          {
-            "sense": "positive",
-            "pr": "PR:000001024",
-            "asserted": "False",
-            "paths": [
-              {
-                "via": "exact_alias",
-                "source_token": "CD56",
-                "tokens": [
-                  "CD56"
-                ]
-              },
-              {
-                "via": "pro_id",
-                "pr": "PR:000001024",
-                "tokens": [
-                  "CD56"
-                ]
-              }
-            ]
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:000001874",
-            "asserted": "False",
-            "paths": []
-          },
-          {
-            "sense": "positive",
-            "pr": "PR:P13591",
-            "asserted": "True",
-            "paths": []
-          }
-        ]
-      },
-      "registry_row": 61,
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md",
-          "href": "../../candidate_cl_mappings_narrative.md"
-        }
-      ]
-    },
-    {
-      "subject_id": "SOULCAP:SC000047",
-      "legacy_subject_id": "SOULCAP:CD56+_CD4_T_cell",
-      "abbreviation": "CD56+ CD4 T cell",
-      "subject_label": "CD56+ CD4 T cell",
-      "cl_id": "CL:4052055",
-      "cl_label": "mature NK T cell, human",
-      "match_type": "Broad",
-      "uncertain": false,
-      "review_status": "needs_review",
-      "evidence_override": "no_marker_axiom",
-      "note": "Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term.",
-      "lexical_evidence": "",
-      "literature_evidence": "",
-      "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-      "curator_evidence": "",
-      "evidence": {
-        "status": "partial_support",
-        "matched": [
-          {
-            "column": "Required phenotypic markers",
-            "clause": "CD56:positive",
-            "assertion": "inferred",
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-                "pr": "PR:000001006",
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-            "pr": "PR:000001017",
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-            "asserted": "False",
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-                "source_token": "CD127",
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-                "via": "exact_alias",
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-                "tokens": [
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-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001332",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD66B",
-                    "tokens": [
-                      "CD66B"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD67",
-                    "tokens": [
-                      "CD67"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001332",
-                    "tokens": [
-                      "CD66B"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001344",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD203C",
-                    "tokens": [
-                      "CD203C"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001950",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD154",
-                    "tokens": [
-                      "CD154"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD40",
-                    "tokens": [
-                      "CD40"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD40LG",
-                    "tokens": [
-                      "CD40LG"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001969",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD87",
-                    "tokens": [
-                      "CD87"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 17,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000084",
-      "label": "T cell",
-      "subject_ids": [
-        "SOULCAP:SC000045",
-        "SOULCAP:SC000065"
-      ],
-      "relations": [
-        "Broad",
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000045",
-          "legacy_subject_id": "SOULCAP:T_cell",
-          "abbreviation": "T cell",
-          "subject_label": "T lymphocyte",
-          "cl_id": "CL:0000084",
-          "cl_label": "T cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified; marker scoring returned unrelated myeloid terms.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "a90c3eddb386b77ec690a7f2a2eb97716a7199b789c245863a4c0041e96e17b1",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 44,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        },
-        {
-          "subject_id": "SOULCAP:SC000065",
-          "legacy_subject_id": "SOULCAP:CD4-/CD8-_T_cell",
-          "abbreviation": "CD4-/CD8- T cell",
-          "subject_label": "alpha/beta and gamma/delta CD4- and CD8- T cells",
-          "cl_id": "CL:0000084",
-          "cl_label": "T cell",
-          "match_type": "Broad",
-          "uncertain": true,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "No peripheral (non-thymic) double-negative term spanning both TCR types; only a thymocyte-stage term exists (wrong tissue).",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "81d30ff7dab4278ec39ef4008e2e6cb051865ff423a24182495de6f6150eff6e",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 55,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000236",
-      "label": "B cell",
-      "subject_ids": [
-        "SOULCAP:SC000023"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000023",
-          "legacy_subject_id": "SOULCAP:B_cell",
-          "abbreviation": "B cell",
-          "subject_label": "B cell",
-          "cl_id": "CL:0000236",
-          "cl_label": "B cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OLS4 REST search returned zero hits for this exact query; found instead via OAK. CL:0000236 has no marker axioms recorded.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD56:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD20:positive OR CD19:positive)"
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "CD20:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "a0300906ff3acd98f58b8ebb9443d973b9710447d8ab4736aa111ae172b1df78",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 24,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000576",
-      "label": "monocyte",
-      "subject_ids": [
-        "SOULCAP:SC000017"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000017",
-          "legacy_subject_id": "SOULCAP:Mono",
-          "abbreviation": "Mono",
-          "subject_label": "Monocyte",
-          "cl_id": "CL:0000576",
-          "cl_label": "monocyte",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "sheet_confirmed",
-          "note": "OAK-verified exact label match (OLS4 was timing out); CL:0000576 has no marker axioms recorded at all. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-          "evidence": {
-            "status": "invalid_profile",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [
-              "Required exclusion: unexpected ')' in group"
-            ],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "84c375696035c6d7c9de16751255259e8e834ac9287f201f13ed821a7bfdda5d",
-            "sheet_cl_id": "CL:0000576",
-            "sheet_confirmation": "agrees",
-            "sheet_notes": ""
-          },
-          "registry_row": 18,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000623",
-      "label": "natural killer cell",
-      "subject_ids": [
-        "SOULCAP:SC000001"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000001",
-          "legacy_subject_id": "SOULCAP:NK",
-          "abbreviation": "NK",
-          "subject_label": "Natural Killer Cell",
-          "cl_id": "CL:0000623",
-          "cl_label": "natural killer cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the defining positive CD56 marker is absent — a documented CL gap (cl_term_issues.md), not confirmed here.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001889",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "True"
-                  }
-                ]
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
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-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD34:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD56:positive OR CD56:high)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "(CD33:negative OR CD64:negative)"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD20",
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "77102d43f9abced8b3efd2e11ad6d91a492bf101ebdb061a1fd67aaaa275c58c",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001289",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001889",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD14",
-                    "tokens": [
-                      "CD14"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001889",
-                    "tokens": [
-                      "CD14"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 2,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000624",
-      "label": "CD4-positive, alpha-beta T cell",
-      "subject_ids": [
-        "SOULCAP:SC000062",
-        "SOULCAP:SC000066"
-      ],
-      "relations": [
-        "Broad",
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000066",
-          "legacy_subject_id": "SOULCAP:CD4+_TCRab_T_cell",
-          "abbreviation": "CD4+ TCRab T cell",
-          "subject_label": "CD4+ alpha/beta T cell",
-          "cl_id": "CL:0000624",
-          "cl_label": "CD4-positive, alpha-beta T cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:positive",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001004",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:positive OR TCRGD:negative)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "3509d97ed33d109d83671dd2292c0945863b4eeead30a216c95cfb9c41c4a5f9",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000025402",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001004",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD4",
-                    "tokens": [
-                      "CD4"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001004",
-                    "tokens": [
-                      "CD4"
-                    ]
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-            ]
-          },
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-          ]
-        },
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-          "legacy_subject_id": "SOULCAP:CD4+_T_cell",
-          "abbreviation": "CD4+ T cell",
-          "subject_label": "alpha/beta and gamma/delta CD4+ T cells",
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-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
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-                ]
-              }
-            ],
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-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
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-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
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-              {
-                "column": "Required exclusion",
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-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:negative"
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-            ],
-            "ideal_conflicts": [],
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-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
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-                "sense": "negative",
-                "pr": "PR:000025402",
-                "asserted": "True",
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-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001004",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD4",
-                    "tokens": [
-                      "CD4"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001004",
-                    "tokens": [
-                      "CD4"
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-                  }
-                ]
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-            ]
-          },
-          "registry_row": 52,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000625",
-      "label": "CD8-positive, alpha-beta T cell",
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-        "SOULCAP:SC000063",
-        "SOULCAP:SC000067"
-      ],
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-        "Broad",
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000067",
-          "legacy_subject_id": "SOULCAP:CD8+_TCRab_T_cell",
-          "abbreviation": "CD8+ TCRab T cell",
-          "subject_label": "CD8+ alpha/beta T cell",
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-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
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-                ]
-              }
-            ],
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-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
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-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
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-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
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-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:positive OR TCRGD:negative)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:positive"
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-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
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-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
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-            "curator_evidence": "",
-            "review_status": "needs_review",
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-            "profile_sha256": "5f511184f5b3fb48855d4ce1b1ed1777e79ca590353b921e6c8b66c7e79e2c17",
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-                "pr": "PR:000001004",
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-                    "source_token": "CD4",
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-                      "CD4"
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-                  },
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-                    "via": "pro_id",
-                    "pr": "PR:000001004",
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-                ]
-              },
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-                "sense": "positive",
-                "pr": "PR:000001084",
-                "asserted": "False",
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-                    "source_token": "CD8A",
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-                    "source_token": "CD8A",
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-                    "source_token": "CD8A",
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-            ]
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-        },
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-                    "source_token": "CD4",
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-                "asserted": "False",
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-                    "source_token": "CD8A",
-                    "tokens": [
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-            ]
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-          "evidence_links": [
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-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
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-      "cl_id": "CL:0000771",
-      "label": "eosinophil",
-      "subject_ids": [
-        "SOULCAP:SC000022"
-      ],
-      "relations": [
-        "Exact"
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-      "mappings": [
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-          "note": "CD193 (CCR3) positive is directly asserted (not inferred) on CL:0000771, precisely matching SOULCAP's defining CD193+ requirement — one of the stronger marker-confirmed matches in this set.",
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-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
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-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
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-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD16:negative"
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-              {
-                "column": "Ideal phenotypic markers",
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-              "CD87",
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-            "errors": [],
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-            "curator_evidence": "",
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-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
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-                    "source_token": "CD19",
-                    "tokens": [
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-                  },
-                  {
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-                    "pr": "PR:000001002",
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-                "asserted": "False",
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-                    "source_token": "CD3E",
-                    "tokens": [
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
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-                ]
-              },
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-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
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-                "asserted": "False",
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-                    "source_token": "CD8A",
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-                ]
-              },
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-                "pr": "PR:000001012",
-                "asserted": "False",
-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD11",
-                    "tokens": [
-                      "CD11"
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11B",
-                    "tokens": [
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-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001254",
-                "asserted": "True",
-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD191",
-                    "tokens": [
-                      "CD191"
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-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001255",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD193",
-                    "tokens": [
-                      "CD193"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001255",
-                    "tokens": [
-                      "CD193"
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-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001307",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD44",
-                    "tokens": [
-                      "CD44"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW44",
-                    "tokens": [
-                      "CDW44"
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-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001332",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD66B",
-                    "tokens": [
-                      "CD66B"
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD67",
-                    "tokens": [
-                      "CD67"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001332",
-                    "tokens": [
-                      "CD66B"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001343",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD69",
-                    "tokens": [
-                      "CD69"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001969",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD87",
-                    "tokens": [
-                      "CD87"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000005178",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD9",
-                    "tokens": [
-                      "CD9"
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-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 37,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000788",
-      "label": "naive B cell",
-      "subject_ids": [
-        "SOULCAP:SC000031"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000031",
-          "legacy_subject_id": "SOULCAP:Naive",
-          "abbreviation": "Naive",
-          "subject_label": "Naive B cell",
-          "cl_id": "CL:0000788",
-          "cl_label": "naive B cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Lexical match; marker scoring found nothing useful.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD20:positive OR CD19:positive)",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  },
-                  {
-                    "pr": "PR:000001289",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "True"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD27:negative",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001963",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "True"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "CD20:positive",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001289",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD56:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD38:low OR CD38:negative OR CD10:negative)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD24:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "IGD:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD27L",
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "7a7186381e27aa134e9a0468d8655160824ee7beb4a772b89d7bcc28f7a1f5bd",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001963",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD27",
-                    "tokens": [
-                      "CD27"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD27L",
-                    "tokens": [
-                      "CD27L"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001963",
-                    "tokens": [
-                      "CD27"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001289",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 31,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000789",
-      "label": "alpha-beta T cell",
-      "subject_ids": [
-        "SOULCAP:SC000060",
-        "SOULCAP:SC000064",
-        "SOULCAP:SC000068",
-        "SOULCAP:SC000069"
-      ],
-      "relations": [
-        "Broad",
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000060",
-          "legacy_subject_id": "SOULCAP:TCRab",
-          "abbreviation": "TCRab",
-          "subject_label": "alpha/beta T cell",
-          "cl_id": "CL:0000789",
-          "cl_label": "alpha-beta T cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified; marker scoring returned unrelated myeloid terms.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:positive OR TCRGD:negative)"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "ba4169b61b018b402de9c4bdf1a7567c89a69d002b6069e3dcd2040bf2174626",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 45,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        },
-        {
-          "subject_id": "SOULCAP:SC000064",
-          "legacy_subject_id": "SOULCAP:CD4+/CD8+_T_cell",
-          "abbreviation": "CD4+/CD8+ T cell",
-          "subject_label": "alpha/beta and gamma/delta CD4+ and CD8+ T cells",
-          "cl_id": "CL:0000789",
-          "cl_label": "alpha-beta T cell",
-          "match_type": "Broad",
-          "uncertain": true,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "No CD4+CD8+ double-positive CL term found at all; peripheral DP T cells are themselves biologically unusual.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "1a94242804d7d285d6e99a84f940c5920cba588e703bc9807bd7066e7a931273",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 54,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        },
-        {
-          "subject_id": "SOULCAP:SC000068",
-          "legacy_subject_id": "SOULCAP:CD4+/CD8+_TCRab_T_cell",
-          "abbreviation": "CD4+/CD8+ TCRab T cell",
-          "subject_label": "CD4+ and CD8+ alpha/beta T cell",
-          "cl_id": "CL:0000789",
-          "cl_label": "alpha-beta T cell",
-          "match_type": "Broad",
-          "uncertain": true,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "No CD4+CD8+ double-positive alpha-beta term found.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:positive OR TCRGD:negative)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "03c69fac8ec012810b035a54f82237833b6f4299be38ce9139c761ca28f65d09",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 56,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        },
-        {
-          "subject_id": "SOULCAP:SC000069",
-          "legacy_subject_id": "SOULCAP:CD4-/CD8-_TCRab_T_cell",
-          "abbreviation": "CD4-/CD8- TCRab T cell",
-          "subject_label": "CD4- and CD8- alpha/beta T cell",
-          "cl_id": "CL:0000789",
-          "cl_label": "alpha-beta T cell",
-          "match_type": "Broad",
-          "uncertain": true,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Only CL:0002489 'double negative thymocyte' found — wrong tissue/maturity stage for a blood/PBMC panel.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:positive OR TCRGD:negative)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "147cd19bfa49697c170198087716cdfac8d82d0db6688150b183bb8e9c0340e5",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 57,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000798",
-      "label": "gamma-delta T cell",
-      "subject_ids": [
-        "SOULCAP:SC000061",
-        "SOULCAP:SC000070",
-        "SOULCAP:SC000071",
-        "SOULCAP:SC000072"
-      ],
-      "relations": [
-        "Broad",
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000061",
-          "legacy_subject_id": "SOULCAP:TCRgd",
-          "abbreviation": "TCRgd",
-          "subject_label": "gamma/delta T cell",
-          "cl_id": "CL:0000798",
-          "cl_label": "gamma-delta T cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified; marker scoring returned unrelated myeloid terms.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:negative OR TCRGD:positive)"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "d7791919e73dbff413ca7cdf0c8b00616465d67ed2a7b2301cb1a628e972622e",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 46,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        },
-        {
-          "subject_id": "SOULCAP:SC000070",
-          "legacy_subject_id": "SOULCAP:CD4+_TCRgd_T_cell",
-          "abbreviation": "CD4+ TCRgd T cell",
-          "subject_label": "CD4+ gamma/delta T cell",
-          "cl_id": "CL:0000798",
-          "cl_label": "gamma-delta T cell",
-          "match_type": "Broad",
-          "uncertain": true,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "CD4+ gamma-delta T cells are atypical/rare; no CL term found.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:negative OR TCRGD:positive)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "737860c20417038a9c5b8c687ec9c6acfc02afd4216730694025bb805010eae3",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 58,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        },
-        {
-          "subject_id": "SOULCAP:SC000071",
-          "legacy_subject_id": "SOULCAP:CD8+_TCRgd_T_cell",
-          "abbreviation": "CD8+ TCRgd T cell",
-          "subject_label": "CD8+ gamma/delta T cell",
-          "cl_id": "CL:0000798",
-          "cl_label": "gamma-delta T cell",
-          "match_type": "Broad",
-          "uncertain": true,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "No CD8+-specific gamma-delta CL term found.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:negative OR TCRGD:positive)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "4bdfff88d621b6e25864f108e587296403ce0eb3f750a245df9360950cf11c2a",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 59,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        },
-        {
-          "subject_id": "SOULCAP:SC000072",
-          "legacy_subject_id": "SOULCAP:CD4+/CD8+_TCRgd",
-          "abbreviation": "CD4+/CD8+ TCRgd",
-          "subject_label": "CD4+/CD8+ gamma/delta T cell",
-          "cl_id": "CL:0000798",
-          "cl_label": "gamma-delta T cell",
-          "match_type": "Broad",
-          "uncertain": true,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "No CD4+CD8+ double-positive gamma-delta term found.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:negative OR TCRGD:positive)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "133eef6f9076e3eb898ce7cacf7933f562be6fbd2f02d633a0eabe79675295e5",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 60,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000803",
-      "label": "CD4-negative, CD8-negative gamma-delta T cell",
-      "subject_ids": [
-        "SOULCAP:SC000073"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000073",
-          "legacy_subject_id": "SOULCAP:CD4-/CD8-_TCRgd",
-          "abbreviation": "CD4-/CD8- TCRgd",
-          "subject_label": "CD4-/CD8- gamma/delta T cell",
-          "cl_id": "CL:0000803",
-          "cl_label": "CD4-negative, CD8-negative gamma-delta T cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified; double-negative is the classical gamma-delta T cell phenotype.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:negative",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001004",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:negative OR TCRGD:positive)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD8A"
-            ],
-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "14aa1fa36c44a759182a64cb01ef6287e81a7962a7a4d9e069923f7cbb98e097",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001004",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD4",
-                    "tokens": [
-                      "CD4"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001004",
-                    "tokens": [
-                      "CD4"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001084",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 51,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000814",
-      "label": "mature NK T cell",
-      "subject_ids": [
-        "SOULCAP:SC000059"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000059",
-          "legacy_subject_id": "SOULCAP:iNKT",
-          "abbreviation": "iNKT",
-          "subject_label": "Invariant Natural Killer T cell",
-          "cl_id": "CL:0000814",
-          "cl_label": "mature NK T cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified. Same term flagged in repo issue #13 for a rename to 'iNKT cell' (filed upstream, awaiting review) — mapping is correct either way.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "invalid_profile",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [
-              "Required phenotypic markers: mixed '|' and space in a group"
-            ],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "60d4418f4342fb333e84d3d92b22dabdede98114b0a29f3c3f48abfab7e76e12",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": ""
-          },
-          "registry_row": 47,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000818",
-      "label": "transitional stage B cell",
-      "subject_ids": [
-        "SOULCAP:SC000028"
-      ],
-      "relations": [
-        "Broad"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000028",
-          "legacy_subject_id": "SOULCAP:T1/T2_B",
-          "abbreviation": "T1/T2 B",
-          "subject_label": "Transitonal B cell 1 and 2",
-          "cl_id": "CL:0000818",
-          "cl_label": "transitional stage B cell",
-          "match_type": "Broad",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "SOULCAP combines T1+T2 into one gate; CL keeps CL:0000958 (T1) and CL:0000959 (T2) separate under this parent term. Sheet's Full Name has a typo ('Transitonal').",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD20:positive OR CD19:positive)",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  },
-                  {
-                    "pr": "PR:000001289",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "True"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD38:high OR CD10:high)",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001408",
-                    "relation": "RO:0015015",
-                    "sense": "high",
-                    "asserted": "True"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD24:high",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001932",
-                    "relation": "RO:0015015",
-                    "sense": "high",
-                    "asserted": "True"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "CD20:positive",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001289",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD56:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD27:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "8e6bd76f1ceb75aafb12ce1c9f1f0a727efdb0db0ab1bd88934207cb56b8d23e",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "high",
-                "pr": "PR:000001408",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD38",
-                    "tokens": [
-                      "CD38"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001408",
-                    "tokens": [
-                      "CD38"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "high",
-                "pr": "PR:000001932",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD24",
-                    "tokens": [
-                      "CD24"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001932",
-                    "tokens": [
-                      "CD24"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001289",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 28,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000860",
-      "label": "classical monocyte",
-      "subject_ids": [
-        "SOULCAP:SC000018"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000018",
-          "legacy_subject_id": "SOULCAP:CMo",
-          "abbreviation": "CMo",
-          "subject_label": "Classical Monocyte",
-          "cl_id": "CL:0000860",
-          "cl_label": "classical monocyte",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "sheet_confirmed",
-          "note": "OAK-verified exact label match. CL:0000860 asserts only CCR2 (CD192) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-          "evidence": {
-            "status": "invalid_profile",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [
-              "Required exclusion: unexpected ')' in group"
-            ],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "4c9436c977492d1ccea66ec05a22925897e6235162061f41dbf8e4e09ac940e3",
-            "sheet_cl_id": "CL:0000860",
-            "sheet_confirmation": "agrees",
-            "sheet_notes": ""
-          },
-          "registry_row": 19,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000875",
-      "label": "non-classical monocyte",
-      "subject_ids": [
-        "SOULCAP:SC000019"
-      ],
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-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000019",
-          "legacy_subject_id": "SOULCAP:NCMo",
-          "abbreviation": "NCMo",
-          "subject_label": "Non-classical Monocyte",
-          "cl_id": "CL:0000875",
-          "cl_label": "non-classical monocyte",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "sheet_confirmed",
-          "note": "OAK-verified exact label match. CL:0000875 asserts only CX3CR1 and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.",
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-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-          "evidence": {
-            "status": "invalid_profile",
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-            "contradictions": [],
-            "gaps": [],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [
-              "Required exclusion: unexpected ')' in group"
-            ],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "2ccb34f2fc50e1126131986d487fe42c67bdcacc16330874b67750b017cbeab0",
-            "sheet_cl_id": "CL:0000875",
-            "sheet_confirmation": "agrees",
-            "sheet_notes": ""
-          },
-          "registry_row": 20,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000895",
-      "label": "naive thymus-derived CD4-positive, alpha-beta T cell",
-      "subject_ids": [
-        "SOULCAP:SC000089"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000089",
-          "legacy_subject_id": "SOULCAP:CD4+_TCRab_Tnaive",
-          "abbreviation": "CD4+ TCRab Tnaive",
-          "subject_label": "CD4+ naive alpha/beta T cell",
-          "cl_id": "CL:0000895",
-          "cl_label": "naive thymus-derived CD4-positive, alpha-beta T cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD127",
-              "CD197",
-              "CD25",
-              "CD4",
-              "CD44",
-              "CD45",
-              "CD45RA",
-              "CD62",
-              "CD62L",
-              "CDW127",
-              "CDW197",
-              "CDW44"
-            ],
-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "high",
-                "pr": "PR:000001318",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD62",
-                    "tokens": [
-                      "CD62"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD62L",
-                    "tokens": [
-                      "CD62L"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "low",
-                "pr": "PR:000001307",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD44",
-                    "tokens": [
-                      "CD44"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW44",
-                    "tokens": [
-                      "CDW44"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001380",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD25",
-                    "tokens": [
-                      "CD25"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001380",
-                    "tokens": [
-                      "CD25"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000025402",
-                "asserted": "False",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001004",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD4",
-                    "tokens": [
-                      "CD4"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001004",
-                    "tokens": [
-                      "CD4"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001006",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001006",
-                    "tokens": [
-                      "CD45"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001015",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD45RA",
-                    "tokens": [
-                      "CD45RA"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001203",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD197",
-                    "tokens": [
-                      "CD197"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW197",
-                    "tokens": [
-                      "CDW197"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001869",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD127",
-                    "tokens": [
-                      "CD127"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW127",
-                    "tokens": [
-                      "CDW127"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001869",
-                    "tokens": [
-                      "CD127"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 75,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000898",
-      "label": "naive T cell",
-      "subject_ids": [
-        "SOULCAP:SC000087"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000087",
-          "legacy_subject_id": "SOULCAP:Tnaive",
-          "abbreviation": "Tnaive",
-          "subject_label": "Naive alpha/beta and gamma/delta T cell",
-          "cl_id": "CL:0000898",
-          "cl_label": "naive T cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified; the one generic (non-CD4/CD8-split) differentiation-state term that does exist in CL.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
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-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD127",
-              "CD197",
-              "CD44",
-              "CD45",
-              "CD45RA",
-              "CD62",
-              "CD62L",
-              "CDW127",
-              "CDW197",
-              "CDW44"
-            ],
-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "high",
-                "pr": "PR:000001318",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD62",
-                    "tokens": [
-                      "CD62"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD62L",
-                    "tokens": [
-                      "CD62L"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "low",
-                "pr": "PR:000001307",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD44",
-                    "tokens": [
-                      "CD44"
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW44",
-                    "tokens": [
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-                  }
-                ]
-              },
-              {
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-                "pr": "PR:000001006",
-                "asserted": "False",
-                "paths": [
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-                    "via": "pro_id",
-                    "pr": "PR:000001006",
-                    "tokens": [
-                      "CD45"
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-                  }
-                ]
-              },
-              {
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-                "pr": "PR:000001015",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD45RA",
-                    "tokens": [
-                      "CD45RA"
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-                  }
-                ]
-              },
-              {
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-                "pr": "PR:000001203",
-                "asserted": "True",
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-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD197",
-                    "tokens": [
-                      "CD197"
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW197",
-                    "tokens": [
-                      "CDW197"
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-                  }
-                ]
-              },
-              {
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-                "pr": "PR:000001869",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD127",
-                    "tokens": [
-                      "CD127"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW127",
-                    "tokens": [
-                      "CDW127"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001869",
-                    "tokens": [
-                      "CD127"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 74,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000900",
-      "label": "naive thymus-derived CD8-positive, alpha-beta T cell",
-      "subject_ids": [
-        "SOULCAP:SC000092"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
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-          "subject_label": "CD8+ naive alpha/beta T cell",
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-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
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-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
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-              {
-                "column": "Required exclusion",
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-              {
-                "column": "Required exclusion",
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-              {
-                "column": "Ideal exclusion",
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-              },
-              {
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-            ],
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-            "untested_cl_markers": [
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-              "CD197",
-              "CD25",
-              "CD4",
-              "CD44",
-              "CD45",
-              "CD45RA",
-              "CD62",
-              "CD62L",
-              "CD8A",
-              "CDW127",
-              "CDW197",
-              "CDW44"
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-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
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-                "pr": "PR:000001318",
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-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD62",
-                    "tokens": [
-                      "CD62"
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD62L",
-                    "tokens": [
-                      "CD62L"
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-                  }
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-              },
-              {
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-                "pr": "PR:000001307",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD44",
-                    "tokens": [
-                      "CD44"
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW44",
-                    "tokens": [
-                      "CDW44"
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-                  }
-                ]
-              },
-              {
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-                "pr": "PR:000001004",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD4",
-                    "tokens": [
-                      "CD4"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001004",
-                    "tokens": [
-                      "CD4"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001380",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD25",
-                    "tokens": [
-                      "CD25"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001380",
-                    "tokens": [
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-                  }
-                ]
-              },
-              {
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-                "pr": "PR:000001006",
-                "asserted": "False",
-                "paths": [
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-                    "via": "pro_id",
-                    "pr": "PR:000001006",
-                    "tokens": [
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-                  }
-                ]
-              },
-              {
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-                "pr": "PR:000001015",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD45RA",
-                    "tokens": [
-                      "CD45RA"
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-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001084",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD8A",
-                    "tokens": [
-                      "CD8A"
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-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001203",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD197",
-                    "tokens": [
-                      "CD197"
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW197",
-                    "tokens": [
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-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001869",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD127",
-                    "tokens": [
-                      "CD127"
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW127",
-                    "tokens": [
-                      "CDW127"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001869",
-                    "tokens": [
-                      "CD127"
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-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000025402",
-                "asserted": "False",
-                "paths": []
-              },
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-                      "CD19"
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-                  },
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-                  }
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-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
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-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
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-                    "via": "exact_alias",
-                    "source_token": "CD3E",
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-                "pr": "PR:000001289",
-                "asserted": "False",
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-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
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-                      "CD20"
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-                "pr": "PR:000001889",
-                "asserted": "False",
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-                    "source_token": "CD14",
-                    "tokens": [
-                      "CD14"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001889",
-                    "tokens": [
-                      "CD14"
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-                  }
-                ]
-              },
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-                "pr": "PR:000002015",
-                "asserted": "True",
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-              },
-              {
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-                "pr": "PR:000001483",
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-    },
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-                    "via": "pro_id",
-                    "pr": "PR:000001002",
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-                "pr": "PR:000001289",
-                "asserted": "False",
-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD20",
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
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-              {
-                "sense": "positive",
-                "pr": "PR:000001963",
-                "asserted": "False",
-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD27",
-                    "tokens": [
-                      "CD27"
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD27L",
-                    "tokens": [
-                      "CD27L"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001963",
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-          "registry_row": 43,
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-              "label": "reports/candidate_cl_mappings_narrative.md",
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-    },
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-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
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-              {
-                "column": "Required phenotypic markers",
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-              {
-                "column": "Required phenotypic markers",
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-              "CD3E"
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-                    "source_token": "CD19",
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-                    "source_token": "CD27",
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-                    "tokens": [
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-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
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-          ]
-        }
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-    },
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-      "cl_id": "CL:0000973",
-      "label": "IgA memory B cell",
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-          "subject_label": "IgA-Class Switched B cell",
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-          "match_type": "Exact",
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-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
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-                "column": "Required phenotypic markers",
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-                "axioms": [
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-                    "pr": "PR:000001002",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
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-                  {
-                    "pr": "PR:000001289",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
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-              {
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-              {
-                "column": "Required exclusion",
-                "clause": "CD56:negative"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
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-              {
-                "column": "Ideal exclusion",
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-              {
-                "column": "Ideal exclusion",
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-              {
-                "column": "Required phenotypic markers",
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-              {
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-                "clause": "IGA:positive"
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-              {
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-            "curator_evidence": "",
-            "review_status": "needs_review",
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-                "pr": "PR:000001020",
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-                "asserted": "False",
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-                "sense": "positive",
-                "pr": "PR:000001002",
-                "asserted": "False",
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-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
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-              {
-                "sense": "positive",
-                "pr": "PR:000001289",
-                "asserted": "False",
-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
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-                "sense": "positive",
-                "pr": "PR:000001963",
-                "asserted": "False",
-                "paths": [
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-                    "source_token": "CD27L",
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-              "label": "reports/candidate_cl_mappings_narrative.md",
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-    },
-    {
-      "cl_id": "CL:0000979",
-      "label": "IgG memory B cell",
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-        "SOULCAP:SC000043"
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-          "note": "OAK-verified; batch lexical search had wrongly picked CL:0002117 'IgG-negative class switched memory B cell' — the opposite polarity of what this row defines.",
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-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
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-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
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-              {
-                "column": "Ideal exclusion",
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-                "clause": "CD45:positive"
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-                "column": "Required phenotypic markers",
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-                "pr": "PR:000001289",
-                "asserted": "False",
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-                "asserted": "False",
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-                    "source_token": "CD27",
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD27L",
-                    "tokens": [
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-                    "via": "pro_id",
-                    "pr": "PR:000001963",
-                    "tokens": [
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-            ]
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-          "registry_row": 42,
-          "evidence_links": [
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-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
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-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000980",
-      "label": "plasmablast",
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-        "SOULCAP:SC000025"
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-      "mappings": [
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-          "note": "Lexical match; marker scoring found nothing useful.",
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-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
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-                "column": "Required phenotypic markers",
-                "clause": "CD19:positive",
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-                "axioms": [
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-              },
-              {
-                "column": "Required phenotypic markers",
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-                "axioms": [
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-                    "relation": "RO:0015015",
-                    "sense": "high",
-                    "asserted": "True"
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-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD38:high",
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-                "axioms": [
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-                    "pr": "PR:000001408",
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-                    "sense": "high",
-                    "asserted": "True"
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-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD138:negative",
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-                    "sense": "negative",
-                    "asserted": "True"
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-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "(CD20:low OR CD20:negative)",
-                "assertion": "direct",
-                "axioms": [
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-                    "relation": "CL:4030046",
-                    "sense": "negative",
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-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
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-                "column": "Required exclusion",
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-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
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-              {
-                "column": "Required exclusion",
-                "clause": "CD56:negative"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
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-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
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-                    "via": "pro_id",
-                    "pr": "PR:000001289",
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-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
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-        },
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-          "subject_id": "SOULCAP:SC000035",
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-          "abbreviation": "BDN3",
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-                "column": "Required exclusion",
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-                "column": "Required exclusion",
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-                "clause": "(CD15:negative OR CD66B:negative)"
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-                "column": "Ideal exclusion",
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-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD24:positive"
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-              {
-                "column": "Required phenotypic markers",
-                "clause": "IGD:negative"
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-              {
-                "column": "Required phenotypic markers",
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-                "column": "Required phenotypic markers",
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-              "CD3E"
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-            "curator_evidence": "",
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-                "sense": "negative",
-                "pr": "PR:000001963",
-                "asserted": "True",
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-                    "via": "exact_alias",
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-                    "via": "exact_alias",
-                    "source_token": "CD27L",
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-                    "via": "pro_id",
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-                "sense": "positive",
-                "pr": "PR:000001002",
-                "asserted": "False",
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-                    "via": "exact_alias",
-                    "source_token": "CD19",
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-                "sense": "positive",
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-                    "via": "exact_alias",
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-                  },
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-                    "via": "pro_id",
-                    "pr": "PR:000001289",
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-          "evidence_links": [
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-              "label": "reports/candidate_cl_mappings_narrative.md",
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-        }
-      ]
-    },
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-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
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-                "column": "Ideal exclusion",
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-                "column": "Required phenotypic markers",
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-              "CD34",
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-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11C",
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-                  },
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-                    "via": "pro_id",
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-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
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-                    "via": "exact_alias",
-                    "source_token": "CD19",
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
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-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001003",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD34",
-                    "tokens": [
-                      "CD34"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001003",
-                    "tokens": [
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-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001289",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 12,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0001058",
-      "label": "plasmacytoid dendritic cell, human",
-      "subject_ids": [
-        "SOULCAP:SC000014"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000014",
-          "legacy_subject_id": "SOULCAP:pDC",
-          "abbreviation": "pDC",
-          "subject_label": "Plasmacytoid Dendritic Cell",
-          "cl_id": "CL:0001058",
-          "cl_label": "plasmacytoid dendritic cell, human",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only. Sheet's Full Name reads 'Peripheral Dendritic Cell' (likely a typo for 'Plasmacytoid'); not yet corrected at source.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD56:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001024",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD14:negative",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001889",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD33:low OR CD33:positive OR CD123:high)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD193:negative OR FCER1A:negative OR CD303:positive)"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD11",
-              "CD11C",
-              "CD20",
-              "CD34",
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "90a3916e208c3f3f041f7567896fcd45d341337251da243d921d8127b8562d71",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001003",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD34",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001003",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001013",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11",
-                    "tokens": [
-                      "CD11"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11C",
-                    "tokens": [
-                      "CD11C"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001013",
-                    "tokens": [
-                      "CD11C"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001289",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001889",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD14",
-                    "tokens": [
-                      "CD14"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001889",
-                    "tokens": [
-                      "CD14"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001865",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD123",
-                    "tokens": [
-                      "CD123"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001865",
-                    "tokens": [
-                      "CD123"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000002015",
-                "asserted": "False",
-                "paths": []
-              }
-            ]
-          },
-          "registry_row": 15,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0001065",
-      "label": "innate lymphoid cell",
-      "subject_ids": [
-        "SOULCAP:SC000007"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000007",
-          "legacy_subject_id": "SOULCAP:ILC",
-          "abbreviation": "ILC",
-          "subject_label": "Innate Lymphoid Cell",
-          "cl_id": "CL:0001065",
-          "cl_label": "innate lymphoid cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, not CL-marker-supported.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD19:negative",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD34:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD127:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "2382ffa8b1693854f19ee2104691b9f0a0c23f6e976b56d1c507692da08d12fc",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 8,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0001067",
-      "label": "group 1 innate lymphoid cell",
-      "subject_ids": [
-        "SOULCAP:SC000008"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000008",
-          "legacy_subject_id": "SOULCAP:ILC1",
-          "abbreviation": "ILC1",
-          "subject_label": "Innate Lymphoid Cell 1",
-          "cl_id": "CL:0001067",
-          "cl_label": "group 1 innate lymphoid cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only. No human-specific CL term exists for group 1 (unlike group 2/3); filed as CL gap, repo issue #14.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD34:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD127:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD56:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD117:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD294:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "0a749f50550a7edd93adce27f94a7302c0dbc59107a2eaae2cf44d03133a6568",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 9,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0001074",
-      "label": "CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human",
-      "subject_ids": [
-        "SOULCAP:SC000006"
-      ],
-      "relations": [
-        "Broad"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000006",
-          "legacy_subject_id": "SOULCAP:ILCp",
-          "abbreviation": "ILCp",
-          "subject_label": "Innate Lymphoid Cell Progenitor",
-          "cl_id": "CL:0001074",
-          "cl_label": "CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human",
-          "match_type": "Broad",
-          "uncertain": true,
-          "review_status": "needs_review",
-          "evidence_override": "",
-          "note": "SOULCAP profile does not test CD34; CL:0001073 (CD34-negative) and CL:0001082 (immature innate lymphoid cell) are equally marker-consistent alternatives, not ruled out.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD56:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001024",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD117:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000002065",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD127:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD294:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD19",
-              "CD34",
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "03443463d5f102ae603565b7efde6d5b2de1f1f9c96016ecffdf886dd673995e",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001003",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD34",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001003",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000002065",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD117",
-                    "tokens": [
-                      "CD117"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000002065",
-                    "tokens": [
-                      "CD117"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:P10721",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:P13591",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:P28906",
-                "asserted": "True",
-                "paths": []
-              }
-            ]
-          },
-          "registry_row": 7,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0001078",
-      "label": "group 3 innate lymphoid cell, human",
-      "subject_ids": [
-        "SOULCAP:SC000010"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000010",
-          "legacy_subject_id": "SOULCAP:ILC3",
-          "abbreviation": "ILC3",
-          "subject_label": "Innate Lymphoid Cell 3",
-          "cl_id": "CL:0001078",
-          "cl_label": "group 3 innate lymphoid cell, human",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had over-specified to an NKp44+ subtype.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD127:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001869",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD34:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD56:low OR CD56:negative)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD117:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD294:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD3E",
-              "CDW127"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "60bbd7b2b4b6bd74a25764ca423e651165008b0e6d59552268caf45876ec18f8",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001869",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD127",
-                    "tokens": [
-                      "CD127"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW127",
-                    "tokens": [
-                      "CDW127"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001869",
-                    "tokens": [
-                      "CD127"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000003455",
-                "asserted": "False",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:P16871",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW127",
-                    "tokens": [
-                      "CDW127"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 11,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0001081",
-      "label": "group 2 innate lymphoid cell, human",
-      "subject_ids": [
-        "SOULCAP:SC000009"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000009",
-          "legacy_subject_id": "SOULCAP:ILC2",
-          "abbreviation": "ILC2",
-          "subject_label": "Innate Lymphoid Cell 2",
-          "cl_id": "CL:0001081",
-          "cl_label": "group 2 innate lymphoid cell, human",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had picked the wrong-species term.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD127:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001869",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD294:positive",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:Q9Y5Y4",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD34:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD56:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD117:low OR CD117:negative)"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD161",
-              "CD25",
-              "CD3E",
-              "CDW127"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "735345c450434e1f351231103ee6c81f7e0ba186fb9ce20230642a95b44c7a23",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001380",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD25",
-                    "tokens": [
-                      "CD25"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001380",
-                    "tokens": [
-                      "CD25"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001869",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD127",
-                    "tokens": [
-                      "CD127"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW127",
-                    "tokens": [
-                      "CDW127"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001869",
-                    "tokens": [
-                      "CD127"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001874",
-                "asserted": "False",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001941",
-                "asserted": "False",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:P01589",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:P16871",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CDW127",
-                    "tokens": [
-                      "CDW127"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:P23771",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:Q12918",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD161",
-                    "tokens": [
-                      "CD161"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:Q12918",
-                    "tokens": [
-                      "CD161"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:Q9Y5Y4",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD294",
-                    "tokens": [
-                      "CD294"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:Q9Y5Y4",
-                    "tokens": [
-                      "CD294"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 10,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0002393",
-      "label": "intermediate monocyte",
-      "subject_ids": [
-        "SOULCAP:SC000020"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000020",
-          "legacy_subject_id": "SOULCAP:IntMo",
-          "abbreviation": "IntMo",
-          "subject_label": "Intermediate Monocyte",
-          "cl_id": "CL:0002393",
-          "cl_label": "intermediate monocyte",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "sheet_confirmed",
-          "note": "OAK-verified exact label match. CL:0002393 asserts only CCR2 (CD192, negative) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-          "evidence": {
-            "status": "invalid_profile",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [
-              "Required exclusion: unexpected ')' in group"
-            ],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "aa79f8b8798d9b79b35cd87edef7133ca5b824636f3f05d0dfe1b990d87d97c3",
-            "sheet_cl_id": "CL:0002393",
-            "sheet_confirmation": "agrees",
-            "sheet_notes": ""
-          },
-          "registry_row": 21,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0002394",
-      "label": "CD141-positive myeloid dendritic cell",
-      "subject_ids": [
-        "SOULCAP:SC000012"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000012",
-          "legacy_subject_id": "SOULCAP:cDC1",
-          "abbreviation": "cDC1",
-          "subject_label": "Conventional Dendritic Cell 1",
-          "cl_id": "CL:0002394",
-          "cl_label": "CD141-positive myeloid dendritic cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had wrongly assigned cDC1 the same term as cDC2.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD123:not:high OR CD193:negative)",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001865",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD123:not:high OR CD303:negative)",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001865",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD56:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001024",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD11C:high",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001013",
-                    "relation": "RO:0015015",
-                    "sense": "high",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD141:positive",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000002105",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD14:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD33:high OR CD64:positive)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "HLA-DR:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD1C:negative"
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "CD172A:negative"
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "FCER1A:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD11",
-              "CD20",
-              "CD34",
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "26b00ac7a3eecc08344c5062dce97e2ccfd3a591c8a347be9f155b32e0128b25",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "high",
-                "pr": "PR:000001013",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11",
-                    "tokens": [
-                      "CD11"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11C",
-                    "tokens": [
-                      "CD11C"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001013",
-                    "tokens": [
-                      "CD11C"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001003",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD34",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001003",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001289",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001865",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD123",
-                    "tokens": [
-                      "CD123"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001865",
-                    "tokens": [
-                      "CD123"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000002105",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD141",
-                    "tokens": [
-                      "CD141"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000002105",
-                    "tokens": [
-                      "CD141"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 13,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0002399",
-      "label": "CD1c-positive myeloid dendritic cell",
-      "subject_ids": [
-        "SOULCAP:SC000013"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000013",
-          "legacy_subject_id": "SOULCAP:cDC2",
-          "abbreviation": "cDC2",
-          "subject_label": "Conventional Dendritic Cell 2",
-          "cl_id": "CL:0002399",
-          "cl_label": "CD1c-positive myeloid dendritic cell",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed correct by cross-check against cDC1.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD123:not:high OR CD193:negative)",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001865",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD123:not:high OR CD303:negative)",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001865",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD19:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001002",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD56:negative",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001024",
-                    "relation": "CL:4030046",
-                    "sense": "negative",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD11C:high",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001013",
-                    "relation": "RO:0015015",
-                    "sense": "high",
-                    "asserted": "False"
-                  }
-                ]
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD1C:positive",
-                "assertion": "direct",
-                "axioms": [
-                  {
-                    "pr": "PR:000002027",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "True"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "CD14:negative"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD3:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD127:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD33:high OR CD64:positive)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "HLA-DR:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(CD141:low OR CD141:negative)"
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "CD172A:positive"
-              },
-              {
-                "column": "Ideal phenotypic markers",
-                "clause": "(FCER1A:low OR FCER1A:negative)"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [
-              "CD11",
-              "CD20",
-              "CD34",
-              "CD3E"
-            ],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "3e6dc30f6e3ac086a6d06bc8b78c27895cba0f8f343c29a212dd2cb02d6dddee",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "high",
-                "pr": "PR:000001013",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11",
-                    "tokens": [
-                      "CD11"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD11C",
-                    "tokens": [
-                      "CD11C"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001013",
-                    "tokens": [
-                      "CD11C"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001002",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001003",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD34",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001003",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001289",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001865",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD123",
-                    "tokens": [
-                      "CD123"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001865",
-                    "tokens": [
-                      "CD123"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000002027",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD1C",
-                    "tokens": [
-                      "CD1C"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD1C",
-                    "tokens": [
-                      "CD1C"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000002027",
-                    "tokens": [
-                      "CD1C"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          "registry_row": 14,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:4030002",
-      "label": "effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated",
-      "subject_ids": [
-        "SOULCAP:SC000103"
-      ],
-      "relations": [
-        "Exact"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000103",
-          "legacy_subject_id": "SOULCAP:CD4+_TCRab_Temra",
-          "abbreviation": "CD4+ TCRab Temra",
-          "subject_label": "CD4+ CD45RA+ effector memory alpha/beta T cell",
-          "cl_id": "CL:4030002",
-          "cl_label": "effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated",
-          "match_type": "Exact",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "OAK-verified. No CD8+-specific counterpart with this 'terminally differentiated' qualifier was found — see gaps.tsv.",
-          "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "no_marker_support",
-            "matched": [],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": []
-          },
-          "registry_row": 81,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:4052055",
-      "label": "mature NK T cell, human",
-      "subject_ids": [
-        "SOULCAP:SC000046",
-        "SOULCAP:SC000047",
-        "SOULCAP:SC000048",
-        "SOULCAP:SC000049",
-        "SOULCAP:SC000050",
-        "SOULCAP:SC000051",
-        "SOULCAP:SC000052",
-        "SOULCAP:SC000053",
-        "SOULCAP:SC000054",
-        "SOULCAP:SC000055",
-        "SOULCAP:SC000056",
-        "SOULCAP:SC000057",
-        "SOULCAP:SC000058"
-      ],
-      "relations": [
-        "Broad"
-      ],
-      "mappings": [
-        {
-          "subject_id": "SOULCAP:SC000046",
-          "legacy_subject_id": "SOULCAP:CD56+_T_cell",
-          "abbreviation": "CD56+ T cell",
-          "subject_label": "CD56+ T cell",
-          "cl_id": "CL:4052055",
-          "cl_label": "mature NK T cell, human",
-          "match_type": "Broad",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD56:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001024",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
-            "gaps": [
-              {
-                "column": "Required exclusion",
-                "clause": "(CD14:negative OR CD33:negative OR CD64:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "(CD19:negative OR CD20:negative)"
-              },
-              {
-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "63ee8683e94c984697c75d473a3e9d0405de2bafb176fbbb7535c16485178719",
-            "sheet_cl_id": "",
-            "sheet_confirmation": "not_recorded",
-            "sheet_notes": "",
-            "resolution_evidence": [
-              {
-                "sense": "positive",
-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001874",
-                "asserted": "False",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:P13591",
-                "asserted": "True",
-                "paths": []
-              }
-            ]
-          },
-          "registry_row": 61,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
-            }
-          ]
-        },
-        {
-          "subject_id": "SOULCAP:SC000047",
-          "legacy_subject_id": "SOULCAP:CD56+_CD4_T_cell",
-          "abbreviation": "CD56+ CD4 T cell",
-          "subject_label": "CD56+ CD4 T cell",
-          "cl_id": "CL:4052055",
-          "cl_label": "mature NK T cell, human",
-          "match_type": "Broad",
-          "uncertain": false,
-          "review_status": "needs_review",
-          "evidence_override": "no_marker_axiom",
-          "note": "Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term.",
-          "lexical_evidence": "",
-          "literature_evidence": "",
-          "evidence_source": "reports/candidate_cl_mappings_narrative.md",
-          "curator_evidence": "",
-          "evidence": {
-            "status": "partial_support",
-            "matched": [
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD56:positive",
-                "assertion": "inferred",
-                "axioms": [
-                  {
-                    "pr": "PR:000001024",
-                    "relation": "RO:0002104",
-                    "sense": "positive",
-                    "asserted": "False"
-                  }
-                ]
-              }
-            ],
-            "contradictions": [],
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-                "column": "Required exclusion",
-                "clause": "CD123:negative"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(HLA-DR:not:positive OR CD11C:not:high)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "(CD15:negative OR CD66B:negative)"
-              },
-              {
-                "column": "Ideal exclusion",
-                "clause": "CD16:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD45:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD3:positive"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "(TCRAB:negative OR TCRGD:positive)"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD4:negative"
-              },
-              {
-                "column": "Required phenotypic markers",
-                "clause": "CD8:negative"
-              }
-            ],
-            "ideal_conflicts": [],
-            "untested_cl_markers": [],
-            "errors": [],
-            "lexical_evidence": "",
-            "literature_evidence": "",
-            "curator_evidence": "",
-            "review_status": "needs_review",
-            "resolution_mode": "explicit_marker_policy",
-            "profile_sha256": "51660216e5f35ba2abe0ff0944ef9899083a81d9233c1b018922ff8d00e6734a",
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-            "sheet_confirmation": "not_recorded",
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-            "resolution_evidence": [
-              {
-                "sense": "positive",
-                "pr": "PR:000001024",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
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-                    "tokens": [
-                      "CD56"
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-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
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-                  }
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-              {
-                "sense": "positive",
-                "pr": "PR:000001874",
-                "asserted": "False",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:P13591",
-                "asserted": "True",
-                "paths": []
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-            ]
-          },
-          "registry_row": 73,
-          "evidence_links": [
-            {
-              "label": "reports/candidate_cl_mappings_narrative.md",
-              "href": "../../candidate_cl_mappings_narrative.md"
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-          ]
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-  "markers": [
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-          "evidence": "reports/cl_pro_relationships.tsv",
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-          "marker_synonyms": "CCR6|CD196",
-          "source_columns": "Required phenotypic markers",
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-          "uniprot_label": "C-C chemokine receptor type 6",
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-          "confidence": "high",
-          "evidence": "reports/cl_pro_relationships.tsv",
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-        "SOULCAP:SC000034",
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-      "records": [
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-          "evidence": "reports/cl_pro_relationships.tsv",
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-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#CD10",
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-      "classification_basis": "Local registry identifiers and notes; not externally verified."
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-        "SOULCAP:SC000008",
-        "SOULCAP:SC000009",
-        "SOULCAP:SC000010"
-      ],
-      "records": [
-        {
-          "marker_token": "CD117",
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-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:000002065",
-          "pro_label": "mast/stem cell growth factor receptor",
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-          "uniprot_label": "mast/stem cell growth factor receptor",
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-          "hgnc_id": "HGNC:6342",
-          "ncbi_gene_id": "",
-          "mapping_method": "cl_pro_tsv",
-          "confidence": "high",
-          "evidence": "reports/cl_pro_relationships.tsv",
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-      ],
-      "pro_ids": [
-        "PR:000002065"
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-      "gene_symbols": [
-        "KIT"
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-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
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-        "marker_token": "CD117",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#CD117",
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-      "classification_basis": "Local registry identifiers and notes; not externally verified."
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-    {
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-        "SOULCAP:SC000040",
-        "SOULCAP:SC000041",
-        "SOULCAP:SC000042",
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-        "SOULCAP:SC000045",
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-        "SOULCAP:SC000119",
-        "SOULCAP:SC000120",
-        "SOULCAP:SC000121",
-        "SOULCAP:SC000122",
-        "SOULCAP:SC000123",
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-        "SOULCAP:SC000125",
-        "SOULCAP:SC000126",
-        "SOULCAP:SC000127"
-      ],
-      "records": [
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-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
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-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
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-      ],
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-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
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-        "SOULCAP:SC000125",
-        "SOULCAP:SC000126",
-        "SOULCAP:SC000127"
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-          "pro_label": "killer cell lectin-like receptor subfamily B member 1 (human)",
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-          "source_columns": "Ideal phenotypic markers",
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-          "pro_label": "tyrosine-protein phosphatase non-receptor type substrate 1",
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-      "pro_ids": [
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-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
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-      "records": [
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-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
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-        "SOULCAP:SC000117",
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-      "records": [
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-          "confidence": "high",
-          "evidence": "reports/cl_pro_relationships.tsv",
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-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
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-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
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-        "SOULCAP:SC000033",
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-        "SOULCAP:SC000057",
-        "SOULCAP:SC000058",
-        "SOULCAP:SC000059",
-        "SOULCAP:SC000060",
-        "SOULCAP:SC000061",
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-        "SOULCAP:SC000063",
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-        "SOULCAP:SC000065",
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-        "SOULCAP:SC000067",
-        "SOULCAP:SC000068",
-        "SOULCAP:SC000069",
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-        "SOULCAP:SC000071",
-        "SOULCAP:SC000072",
-        "SOULCAP:SC000073",
-        "SOULCAP:SC000074",
-        "SOULCAP:SC000075",
-        "SOULCAP:SC000076",
-        "SOULCAP:SC000077",
-        "SOULCAP:SC000078",
-        "SOULCAP:SC000079",
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-        "SOULCAP:SC000081",
-        "SOULCAP:SC000082",
-        "SOULCAP:SC000083",
-        "SOULCAP:SC000084",
-        "SOULCAP:SC000085",
-        "SOULCAP:SC000086",
-        "SOULCAP:SC000087",
-        "SOULCAP:SC000088",
-        "SOULCAP:SC000089",
-        "SOULCAP:SC000090",
-        "SOULCAP:SC000091",
-        "SOULCAP:SC000092",
-        "SOULCAP:SC000093",
-        "SOULCAP:SC000094",
-        "SOULCAP:SC000095",
-        "SOULCAP:SC000096",
-        "SOULCAP:SC000097",
-        "SOULCAP:SC000098",
-        "SOULCAP:SC000099",
-        "SOULCAP:SC000100",
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-        "SOULCAP:SC000102",
-        "SOULCAP:SC000103",
-        "SOULCAP:SC000104",
-        "SOULCAP:SC000105",
-        "SOULCAP:SC000106",
-        "SOULCAP:SC000107",
-        "SOULCAP:SC000108",
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-        "SOULCAP:SC000110",
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-        "SOULCAP:SC000113",
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-        "SOULCAP:SC000119",
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-        "SOULCAP:SC000123",
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-        "SOULCAP:SC000125",
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-      "records": [
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-      "status": "mapped",
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-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
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-      "records": [
-        {
-          "marker_token": "CD194",
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-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
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-        "SOULCAP:SC000117",
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-      ],
-      "records": [
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-          "marker_token": "CD196",
-          "marker_synonyms": "CCR6|CD196",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:000001202",
-          "pro_label": "C-C chemokine receptor type 6",
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-          "uniprot_label": "C-C chemokine receptor type 6",
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-          "mapping_method": "cl_pro_tsv",
-          "confidence": "high",
-          "evidence": "reports/cl_pro_relationships.tsv",
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-      ],
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-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
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-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
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-      "classification_basis": "Local registry identifiers and notes; not externally verified."
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-      "records": [
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-          "source_columns": "Ideal phenotypic markers",
-          "pro_id": "PR:000001204",
-          "pro_label": "C-C chemokine receptor type 8",
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-          "uniprot_label": "C-C chemokine receptor type 8",
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-          "mapping_method": "ols4",
-          "confidence": "high",
-          "evidence": "https://www.ebi.ac.uk/ols4/api/search?q=CCR8&ontology=pr; https://nodenormalization-sri.renci.org/1.3/get_normalized_nodes?curie=PR:000001204",
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-      "pro_ids": [
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-      "identifier_status": "no_gene_mapping",
-      "status": "no_gene_mapping",
-      "status_reason": "PRO identifier recorded, but no gene symbol or documented representation exception; review is needed.",
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-        "marker_token": "CD198",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
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-      "classification_basis": "Local registry identifiers and notes; not externally verified."
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-    {
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-      "records": [
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-          "marker_token": "CD1c",
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-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:000002027",
-          "pro_label": "T-cell surface glycoprotein CD1c",
-          "uniprot_id": "P29017",
-          "uniprot_label": "T-cell surface glycoprotein CD1c",
-          "gene_symbol": "CD1C",
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-          "mapping_method": "cl_pro_tsv",
-          "confidence": "high",
-          "evidence": "reports/cl_pro_relationships.tsv",
-          "notes": ""
-        }
-      ],
-      "pro_ids": [
-        "PR:000002027"
-      ],
-      "gene_symbols": [
-        "CD1C"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "CD1C",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#CD1c",
-        "registry_sha256": "ec9943c17324c73a53427964a51c264e9b86e1a6755eb850c1bc943a8126f554"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "CD1d-a-GalCer",
-      "affected_subjects": [],
-      "records": [
-        {
-          "marker_token": "CD1d-a-GalCer",
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-          "source_columns": "Required phenotypic markers",
-          "pro_id": "",
-          "pro_label": "",
-          "uniprot_id": "",
-          "uniprot_label": "",
-          "gene_symbol": "",
-          "hgnc_id": "",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "low",
-          "evidence": "",
-          "notes": "lipid antigen (alpha-galactosylceramide) presented by CD1d; not a protein marker"
-        }
-      ],
-      "pro_ids": [],
-      "gene_symbols": [],
-      "ncbi_gene_ids": [],
-      "identifier_status": "no_pro_mapping",
-      "status": "documented_nonprotein_or_reagent",
-      "status_reason": "Registry notes document a non-protein gate or reagent; a single gene/PRO mapping may not apply.",
-      "resolution_policy": {
-        "marker_token": "CD1D-A-GALCER",
-        "representation": "reagent_gate",
-        "protein_resolution": "withhold",
-        "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#CD1d-a-GalCer",
-        "registry_sha256": "ca0282e7ce4edd98e9c762657870f3556de86befddf8c33100fbbfcb7a800f01"
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-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "CD20",
-      "affected_subjects": [
-        "SOULCAP:SC000023",
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-        "SOULCAP:SC000028",
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-        "SOULCAP:SC000037",
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-        "SOULCAP:SC000040",
-        "SOULCAP:SC000041",
-        "SOULCAP:SC000042",
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-        "SOULCAP:SC000058",
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-        "SOULCAP:SC000060",
-        "SOULCAP:SC000061",
-        "SOULCAP:SC000062",
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-        "SOULCAP:SC000064",
-        "SOULCAP:SC000065",
-        "SOULCAP:SC000066",
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-        "SOULCAP:SC000068",
-        "SOULCAP:SC000069",
-        "SOULCAP:SC000070",
-        "SOULCAP:SC000071",
-        "SOULCAP:SC000072",
-        "SOULCAP:SC000073",
-        "SOULCAP:SC000074",
-        "SOULCAP:SC000075",
-        "SOULCAP:SC000076",
-        "SOULCAP:SC000077",
-        "SOULCAP:SC000078",
-        "SOULCAP:SC000079",
-        "SOULCAP:SC000080",
-        "SOULCAP:SC000081",
-        "SOULCAP:SC000082",
-        "SOULCAP:SC000083",
-        "SOULCAP:SC000084",
-        "SOULCAP:SC000085",
-        "SOULCAP:SC000086",
-        "SOULCAP:SC000087",
-        "SOULCAP:SC000088",
-        "SOULCAP:SC000089",
-        "SOULCAP:SC000090",
-        "SOULCAP:SC000091",
-        "SOULCAP:SC000092",
-        "SOULCAP:SC000093",
-        "SOULCAP:SC000094",
-        "SOULCAP:SC000095",
-        "SOULCAP:SC000096",
-        "SOULCAP:SC000097",
-        "SOULCAP:SC000098",
-        "SOULCAP:SC000099",
-        "SOULCAP:SC000100",
-        "SOULCAP:SC000101",
-        "SOULCAP:SC000102",
-        "SOULCAP:SC000103",
-        "SOULCAP:SC000104",
-        "SOULCAP:SC000105",
-        "SOULCAP:SC000106",
-        "SOULCAP:SC000107",
-        "SOULCAP:SC000108",
-        "SOULCAP:SC000109",
-        "SOULCAP:SC000110",
-        "SOULCAP:SC000111",
-        "SOULCAP:SC000112",
-        "SOULCAP:SC000113",
-        "SOULCAP:SC000114",
-        "SOULCAP:SC000115",
-        "SOULCAP:SC000116",
-        "SOULCAP:SC000117",
-        "SOULCAP:SC000118",
-        "SOULCAP:SC000119",
-        "SOULCAP:SC000120",
-        "SOULCAP:SC000121",
-        "SOULCAP:SC000122",
-        "SOULCAP:SC000123",
-        "SOULCAP:SC000124",
-        "SOULCAP:SC000125",
-        "SOULCAP:SC000126",
-        "SOULCAP:SC000127"
-      ],
-      "records": [
-        {
-          "marker_token": "CD20",
-          "marker_synonyms": "",
-          "source_columns": "Ideal phenotypic markers|Required exclusion|Required phenotypic markers",
-          "pro_id": "PR:000001289",
-          "pro_label": "membrane-spanning 4-domains subfamily A member 1",
-          "uniprot_id": "P11836",
-          "uniprot_label": "membrane-spanning 4-domains subfamily A member 1",
-          "gene_symbol": "MS4A1",
-          "hgnc_id": "HGNC:7315",
-          "ncbi_gene_id": "",
-          "mapping_method": "cl_pro_tsv",
-          "confidence": "high",
-          "evidence": "reports/cl_pro_relationships.tsv",
-          "notes": ""
-        }
-      ],
-      "pro_ids": [
-        "PR:000001289"
-      ],
-      "gene_symbols": [
-        "MS4A1"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
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-        "marker_token": "CD20",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#CD20",
-        "registry_sha256": "0666c2a713f30454576d62dedecb049fdca0acecbd50bc08804116bd160f7c25"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "CD21",
-      "affected_subjects": [
-        "SOULCAP:SC000033",
-        "SOULCAP:SC000034",
-        "SOULCAP:SC000035",
-        "SOULCAP:SC000036"
-      ],
-      "records": [
-        {
-          "marker_token": "CD21",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:000001338",
-          "pro_label": "complement receptor type 2",
-          "uniprot_id": "P20023",
-          "uniprot_label": "complement receptor type 2",
-          "gene_symbol": "CR2",
-          "hgnc_id": "HGNC:2336",
-          "ncbi_gene_id": "",
-          "mapping_method": "cl_pro_tsv",
-          "confidence": "high",
-          "evidence": "reports/cl_pro_relationships.tsv",
-          "notes": ""
-        }
-      ],
-      "pro_ids": [
-        "PR:000001338"
-      ],
-      "gene_symbols": [
-        "CR2"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "CD21",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#CD21",
-        "registry_sha256": "e60e1a4490685b99e9674d65469bacd24a97d6dd0950210f7a3c7453d86579b1"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "CD24",
-      "affected_subjects": [
-        "SOULCAP:SC000028",
-        "SOULCAP:SC000030",
-        "SOULCAP:SC000031",
-        "SOULCAP:SC000032",
-        "SOULCAP:SC000033",
-        "SOULCAP:SC000034",
-        "SOULCAP:SC000035",
-        "SOULCAP:SC000036"
-      ],
-      "records": [
-        {
-          "marker_token": "CD24",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:000001932",
-          "pro_label": "signal transducer CD24",
-          "uniprot_id": "P25063",
-          "uniprot_label": "signal transducer CD24",
-          "gene_symbol": "CD24",
-          "hgnc_id": "HGNC:1645",
-          "ncbi_gene_id": "",
-          "mapping_method": "cl_pro_tsv",
-          "confidence": "high",
-          "evidence": "reports/cl_pro_relationships.tsv",
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-        }
-      ],
-      "pro_ids": [
-        "PR:000001932"
-      ],
-      "gene_symbols": [
-        "CD24"
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-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "CD24",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#CD24",
-        "registry_sha256": "e1cdc47dfa67d7f67019de006ba704a9d2bf0b13d04f0bbed037e8fede953bec"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "CD25",
-      "affected_subjects": [
-        "SOULCAP:SC000121"
-      ],
-      "records": [
-        {
-          "marker_token": "CD25",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:000001380",
-          "pro_label": "interleukin-2 receptor subunit alpha",
-          "uniprot_id": "P01589",
-          "uniprot_label": "interleukin-2 receptor subunit alpha",
-          "gene_symbol": "IL2RA",
-          "hgnc_id": "HGNC:6008",
-          "ncbi_gene_id": "",
-          "mapping_method": "cl_pro_tsv",
-          "confidence": "high",
-          "evidence": "reports/cl_pro_relationships.tsv",
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-      ],
-      "pro_ids": [
-        "PR:000001380"
-      ],
-      "gene_symbols": [
-        "IL2RA"
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-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "CD25",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#CD25",
-        "registry_sha256": "5951ea552f766b80cf59b979f41ba02de31750f5c0f6fbb1b21e55b67f3b82ab"
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-      "classification_basis": "Local registry identifiers and notes; not externally verified."
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-    {
-      "marker_token": "CD27",
-      "affected_subjects": [
-        "SOULCAP:SC000024",
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-        "SOULCAP:SC000032",
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-        "SOULCAP:SC000036",
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-        "SOULCAP:SC000040",
-        "SOULCAP:SC000041",
-        "SOULCAP:SC000042",
-        "SOULCAP:SC000043",
-        "SOULCAP:SC000044"
-      ],
-      "records": [
-        {
-          "marker_token": "CD27",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:000001963",
-          "pro_label": "CD27 molecule",
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-          "uniprot_label": "CD27 molecule",
-          "gene_symbol": "CD27",
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-          "mapping_method": "cl_pro_tsv",
-          "confidence": "high",
-          "evidence": "reports/cl_pro_relationships.tsv",
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-      ],
-      "pro_ids": [
-        "PR:000001963"
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-      "gene_symbols": [
-        "CD27"
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-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "CD27",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#CD27",
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-      "classification_basis": "Local registry identifiers and notes; not externally verified."
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-    {
-      "marker_token": "CD294",
-      "affected_subjects": [
-        "SOULCAP:SC000006",
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-        "SOULCAP:SC000009",
-        "SOULCAP:SC000010",
-        "SOULCAP:SC000112",
-        "SOULCAP:SC000117"
-      ],
-      "records": [
-        {
-          "marker_token": "CD294",
-          "marker_synonyms": "",
-          "source_columns": "Ideal phenotypic markers|Required phenotypic markers",
-          "pro_id": "PR:Q9Y5Y4",
-          "pro_label": "prostaglandin D2 receptor 2 (human)",
-          "uniprot_id": "Q9Y5Y4",
-          "uniprot_label": "prostaglandin D2 receptor 2 (human)",
-          "gene_symbol": "PTGDR2",
-          "hgnc_id": "HGNC:4502",
-          "ncbi_gene_id": "",
-          "mapping_method": "cl_pro_tsv",
-          "confidence": "high",
-          "evidence": "reports/cl_pro_relationships.tsv",
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-        }
-      ],
-      "pro_ids": [
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-      "gene_symbols": [
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-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "CD294",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#CD294",
-        "registry_sha256": "4bdfb21b9889754554aaaeb73cfaed4816ac01c39857fb81b064b61f3bee8cc7"
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-      "classification_basis": "Local registry identifiers and notes; not externally verified."
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-    {
-      "marker_token": "CD3",
-      "affected_subjects": [
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-        "SOULCAP:SC000014",
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-        "SOULCAP:SC000018",
-        "SOULCAP:SC000019",
-        "SOULCAP:SC000020",
-        "SOULCAP:SC000021",
-        "SOULCAP:SC000022",
-        "SOULCAP:SC000023",
-        "SOULCAP:SC000024",
-        "SOULCAP:SC000025",
-        "SOULCAP:SC000026",
-        "SOULCAP:SC000028",
-        "SOULCAP:SC000029",
-        "SOULCAP:SC000030",
-        "SOULCAP:SC000031",
-        "SOULCAP:SC000032",
-        "SOULCAP:SC000033",
-        "SOULCAP:SC000034",
-        "SOULCAP:SC000035",
-        "SOULCAP:SC000036",
-        "SOULCAP:SC000037",
-        "SOULCAP:SC000038",
-        "SOULCAP:SC000039",
-        "SOULCAP:SC000040",
-        "SOULCAP:SC000041",
-        "SOULCAP:SC000042",
-        "SOULCAP:SC000043",
-        "SOULCAP:SC000044",
-        "SOULCAP:SC000045",
-        "SOULCAP:SC000046",
-        "SOULCAP:SC000047",
-        "SOULCAP:SC000048",
-        "SOULCAP:SC000049",
-        "SOULCAP:SC000050",
-        "SOULCAP:SC000051",
-        "SOULCAP:SC000052",
-        "SOULCAP:SC000053",
-        "SOULCAP:SC000054",
-        "SOULCAP:SC000055",
-        "SOULCAP:SC000056",
-        "SOULCAP:SC000057",
-        "SOULCAP:SC000058",
-        "SOULCAP:SC000060",
-        "SOULCAP:SC000061",
-        "SOULCAP:SC000062",
-        "SOULCAP:SC000063",
-        "SOULCAP:SC000064",
-        "SOULCAP:SC000065",
-        "SOULCAP:SC000066",
-        "SOULCAP:SC000067",
-        "SOULCAP:SC000068",
-        "SOULCAP:SC000069",
-        "SOULCAP:SC000070",
-        "SOULCAP:SC000071",
-        "SOULCAP:SC000072",
-        "SOULCAP:SC000073",
-        "SOULCAP:SC000115",
-        "SOULCAP:SC000116",
-        "SOULCAP:SC000117",
-        "SOULCAP:SC000118",
-        "SOULCAP:SC000119",
-        "SOULCAP:SC000121",
-        "SOULCAP:SC000122"
-      ],
-      "records": [
-        {
-          "marker_token": "CD3",
-          "marker_synonyms": "",
-          "source_columns": "Ideal exclusion|Required exclusion|Required phenotypic markers",
-          "pro_id": "PR:000001020",
-          "pro_label": "CD3 epsilon",
-          "uniprot_id": "P07766",
-          "uniprot_label": "CD3 epsilon",
-          "gene_symbol": "CD3E",
-          "hgnc_id": "HGNC:1674",
-          "ncbi_gene_id": "",
-          "mapping_method": "cl_pro_tsv",
-          "confidence": "high",
-          "evidence": "reports/cl_pro_relationships.tsv",
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-      ],
-      "pro_ids": [
-        "PR:000001020"
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-      "gene_symbols": [
-        "CD3E"
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-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "CD3",
-        "representation": "unresolved",
-        "protein_resolution": "withhold",
-        "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#CD3",
-        "registry_sha256": "4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0"
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-      "classification_basis": "Local registry identifiers and notes; not externally verified."
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-    {
-      "marker_token": "CD303",
-      "affected_subjects": [
-        "SOULCAP:SC000011",
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-        "SOULCAP:SC000013",
-        "SOULCAP:SC000014",
-        "SOULCAP:SC000015"
-      ],
-      "records": [
-        {
-          "marker_token": "CD303",
-          "marker_synonyms": "",
-          "source_columns": "Required exclusion|Required phenotypic markers",
-          "pro_id": "PR:000001292",
-          "pro_label": "C-type lectin domain family 4 member C",
-          "uniprot_id": "Q8WTT0",
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-        {
-          "marker_token": "CD57",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "",
-          "pro_label": "",
-          "uniprot_id": "",
-          "uniprot_label": "",
-          "gene_symbol": "",
-          "hgnc_id": "",
-          "ncbi_gene_id": "",
-          "mapping_method": "ols4",
-          "confidence": "low",
-          "evidence": "https://www.ebi.ac.uk/ols4/api/search?q=CD57&ontology=pr",
-          "notes": "B3GAT1 / HNK-1 epitope; HNK-1 carbohydrate epitope synthesised by B3GAT1"
-        }
-      ],
-      "pro_ids": [],
-      "gene_symbols": [],
-      "ncbi_gene_ids": [],
-      "identifier_status": "no_pro_mapping",
-      "status": "documented_nonprotein_or_reagent",
-      "status_reason": "Registry notes document a non-protein gate or reagent; a single gene/PRO mapping may not apply.",
-      "resolution_policy": {
-        "marker_token": "CD57",
-        "representation": "reagent_gate",
-        "protein_resolution": "withhold",
-        "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#CD57",
-        "registry_sha256": "2cfc4413ee4844d8bb2c3bfddeb2ed6704073cfdefe57381f38270aaee40d080"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "CD64",
-      "affected_subjects": [
-        "SOULCAP:SC000001",
-        "SOULCAP:SC000002",
-        "SOULCAP:SC000003",
-        "SOULCAP:SC000004",
-        "SOULCAP:SC000005",
-        "SOULCAP:SC000007",
-        "SOULCAP:SC000008",
-        "SOULCAP:SC000009",
-        "SOULCAP:SC000010",
-        "SOULCAP:SC000011",
-        "SOULCAP:SC000012",
-        "SOULCAP:SC000013",
-        "SOULCAP:SC000017",
-        "SOULCAP:SC000018",
-        "SOULCAP:SC000019",
-        "SOULCAP:SC000020",
-        "SOULCAP:SC000021",
-        "SOULCAP:SC000022",
-        "SOULCAP:SC000023",
-        "SOULCAP:SC000024",
-        "SOULCAP:SC000025",
-        "SOULCAP:SC000026",
-        "SOULCAP:SC000028",
-        "SOULCAP:SC000029",
-        "SOULCAP:SC000030",
-        "SOULCAP:SC000031",
-        "SOULCAP:SC000032",
-        "SOULCAP:SC000033",
-        "SOULCAP:SC000034",
-        "SOULCAP:SC000035",
-        "SOULCAP:SC000036",
-        "SOULCAP:SC000037",
-        "SOULCAP:SC000038",
-        "SOULCAP:SC000039",
-        "SOULCAP:SC000040",
-        "SOULCAP:SC000041",
-        "SOULCAP:SC000042",
-        "SOULCAP:SC000043",
-        "SOULCAP:SC000044",
-        "SOULCAP:SC000045",
-        "SOULCAP:SC000046",
-        "SOULCAP:SC000047",
-        "SOULCAP:SC000048",
-        "SOULCAP:SC000049",
-        "SOULCAP:SC000050",
-        "SOULCAP:SC000051",
-        "SOULCAP:SC000052",
-        "SOULCAP:SC000053",
-        "SOULCAP:SC000054",
-        "SOULCAP:SC000055",
-        "SOULCAP:SC000056",
-        "SOULCAP:SC000057",
-        "SOULCAP:SC000058",
-        "SOULCAP:SC000059",
-        "SOULCAP:SC000060",
-        "SOULCAP:SC000061",
-        "SOULCAP:SC000062",
-        "SOULCAP:SC000063",
-        "SOULCAP:SC000064",
-        "SOULCAP:SC000065",
-        "SOULCAP:SC000066",
-        "SOULCAP:SC000067",
-        "SOULCAP:SC000068",
-        "SOULCAP:SC000069",
-        "SOULCAP:SC000070",
-        "SOULCAP:SC000071",
-        "SOULCAP:SC000072",
-        "SOULCAP:SC000073",
-        "SOULCAP:SC000074",
-        "SOULCAP:SC000075",
-        "SOULCAP:SC000076",
-        "SOULCAP:SC000077",
-        "SOULCAP:SC000078",
-        "SOULCAP:SC000079",
-        "SOULCAP:SC000080",
-        "SOULCAP:SC000081",
-        "SOULCAP:SC000082",
-        "SOULCAP:SC000083",
-        "SOULCAP:SC000084",
-        "SOULCAP:SC000085",
-        "SOULCAP:SC000086",
-        "SOULCAP:SC000087",
-        "SOULCAP:SC000088",
-        "SOULCAP:SC000089",
-        "SOULCAP:SC000090",
-        "SOULCAP:SC000091",
-        "SOULCAP:SC000092",
-        "SOULCAP:SC000093",
-        "SOULCAP:SC000094",
-        "SOULCAP:SC000095",
-        "SOULCAP:SC000096",
-        "SOULCAP:SC000097",
-        "SOULCAP:SC000098",
-        "SOULCAP:SC000099",
-        "SOULCAP:SC000100",
-        "SOULCAP:SC000101",
-        "SOULCAP:SC000102",
-        "SOULCAP:SC000103",
-        "SOULCAP:SC000104",
-        "SOULCAP:SC000105",
-        "SOULCAP:SC000106",
-        "SOULCAP:SC000107",
-        "SOULCAP:SC000108",
-        "SOULCAP:SC000109",
-        "SOULCAP:SC000110",
-        "SOULCAP:SC000111",
-        "SOULCAP:SC000112",
-        "SOULCAP:SC000113",
-        "SOULCAP:SC000114",
-        "SOULCAP:SC000115",
-        "SOULCAP:SC000116",
-        "SOULCAP:SC000117",
-        "SOULCAP:SC000118",
-        "SOULCAP:SC000119",
-        "SOULCAP:SC000120",
-        "SOULCAP:SC000121",
-        "SOULCAP:SC000122",
-        "SOULCAP:SC000123",
-        "SOULCAP:SC000124",
-        "SOULCAP:SC000125",
-        "SOULCAP:SC000126",
-        "SOULCAP:SC000127"
-      ],
-      "records": [
-        {
-          "marker_token": "CD64",
-          "marker_synonyms": "",
-          "source_columns": "Ideal phenotypic markers|Required exclusion|Required phenotypic markers",
-          "pro_id": "PR:000001465",
-          "pro_label": "high affinity immunoglobulin gamma Fc receptor I",
-          "uniprot_id": "P12314",
-          "uniprot_label": "high affinity immunoglobulin gamma Fc receptor I",
-          "gene_symbol": "FCGR1A",
-          "hgnc_id": "HGNC:3613",
-          "ncbi_gene_id": "",
-          "mapping_method": "cl_pro_tsv",
-          "confidence": "high",
-          "evidence": "reports/cl_pro_relationships.tsv",
-          "notes": ""
-        }
-      ],
-      "pro_ids": [
-        "PR:000001465"
-      ],
-      "gene_symbols": [
-        "FCGR1A"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "CD64",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#CD64",
-        "registry_sha256": "46571d20d73b5ef77ec5c7be28beda3c94890e33c17faf4904e285b294e2db47"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "CD66b",
-      "affected_subjects": [
-        "SOULCAP:SC000001",
-        "SOULCAP:SC000002",
-        "SOULCAP:SC000003",
-        "SOULCAP:SC000004",
-        "SOULCAP:SC000005",
-        "SOULCAP:SC000007",
-        "SOULCAP:SC000008",
-        "SOULCAP:SC000009",
-        "SOULCAP:SC000010",
-        "SOULCAP:SC000014",
-        "SOULCAP:SC000015",
-        "SOULCAP:SC000016",
-        "SOULCAP:SC000017",
-        "SOULCAP:SC000018",
-        "SOULCAP:SC000019",
-        "SOULCAP:SC000020",
-        "SOULCAP:SC000021",
-        "SOULCAP:SC000022",
-        "SOULCAP:SC000023",
-        "SOULCAP:SC000024",
-        "SOULCAP:SC000025",
-        "SOULCAP:SC000026",
-        "SOULCAP:SC000028",
-        "SOULCAP:SC000029",
-        "SOULCAP:SC000030",
-        "SOULCAP:SC000031",
-        "SOULCAP:SC000032",
-        "SOULCAP:SC000033",
-        "SOULCAP:SC000034",
-        "SOULCAP:SC000035",
-        "SOULCAP:SC000036",
-        "SOULCAP:SC000037",
-        "SOULCAP:SC000038",
-        "SOULCAP:SC000039",
-        "SOULCAP:SC000040",
-        "SOULCAP:SC000041",
-        "SOULCAP:SC000042",
-        "SOULCAP:SC000043",
-        "SOULCAP:SC000044",
-        "SOULCAP:SC000045",
-        "SOULCAP:SC000046",
-        "SOULCAP:SC000047",
-        "SOULCAP:SC000048",
-        "SOULCAP:SC000049",
-        "SOULCAP:SC000050",
-        "SOULCAP:SC000051",
-        "SOULCAP:SC000052",
-        "SOULCAP:SC000053",
-        "SOULCAP:SC000054",
-        "SOULCAP:SC000055",
-        "SOULCAP:SC000056",
-        "SOULCAP:SC000057",
-        "SOULCAP:SC000058",
-        "SOULCAP:SC000059",
-        "SOULCAP:SC000060",
-        "SOULCAP:SC000061",
-        "SOULCAP:SC000062",
-        "SOULCAP:SC000063",
-        "SOULCAP:SC000064",
-        "SOULCAP:SC000065",
-        "SOULCAP:SC000066",
-        "SOULCAP:SC000067",
-        "SOULCAP:SC000068",
-        "SOULCAP:SC000069",
-        "SOULCAP:SC000070",
-        "SOULCAP:SC000071",
-        "SOULCAP:SC000072",
-        "SOULCAP:SC000073",
-        "SOULCAP:SC000074",
-        "SOULCAP:SC000075",
-        "SOULCAP:SC000076",
-        "SOULCAP:SC000077",
-        "SOULCAP:SC000078",
-        "SOULCAP:SC000079",
-        "SOULCAP:SC000080",
-        "SOULCAP:SC000081",
-        "SOULCAP:SC000082",
-        "SOULCAP:SC000083",
-        "SOULCAP:SC000084",
-        "SOULCAP:SC000085",
-        "SOULCAP:SC000086",
-        "SOULCAP:SC000087",
-        "SOULCAP:SC000088",
-        "SOULCAP:SC000089",
-        "SOULCAP:SC000090",
-        "SOULCAP:SC000091",
-        "SOULCAP:SC000092",
-        "SOULCAP:SC000093",
-        "SOULCAP:SC000094",
-        "SOULCAP:SC000095",
-        "SOULCAP:SC000096",
-        "SOULCAP:SC000097",
-        "SOULCAP:SC000098",
-        "SOULCAP:SC000099",
-        "SOULCAP:SC000100",
-        "SOULCAP:SC000101",
-        "SOULCAP:SC000102",
-        "SOULCAP:SC000103",
-        "SOULCAP:SC000104",
-        "SOULCAP:SC000105",
-        "SOULCAP:SC000106",
-        "SOULCAP:SC000107",
-        "SOULCAP:SC000108",
-        "SOULCAP:SC000109",
-        "SOULCAP:SC000110",
-        "SOULCAP:SC000111",
-        "SOULCAP:SC000112",
-        "SOULCAP:SC000113",
-        "SOULCAP:SC000114",
-        "SOULCAP:SC000115",
-        "SOULCAP:SC000116",
-        "SOULCAP:SC000117",
-        "SOULCAP:SC000118",
-        "SOULCAP:SC000119",
-        "SOULCAP:SC000120",
-        "SOULCAP:SC000121",
-        "SOULCAP:SC000122",
-        "SOULCAP:SC000123",
-        "SOULCAP:SC000124",
-        "SOULCAP:SC000125",
-        "SOULCAP:SC000126",
-        "SOULCAP:SC000127"
-      ],
-      "records": [
-        {
-          "marker_token": "CD66b",
-          "marker_synonyms": "",
-          "source_columns": "Ideal exclusion|Required exclusion|Required phenotypic markers",
-          "pro_id": "PR:000001332",
-          "pro_label": "cell adhesion molecule CEACAM8",
-          "uniprot_id": "P31997",
-          "uniprot_label": "cell adhesion molecule CEACAM8",
-          "gene_symbol": "CEACAM8",
-          "hgnc_id": "HGNC:1820",
-          "ncbi_gene_id": "",
-          "mapping_method": "cl_pro_tsv",
-          "confidence": "high",
-          "evidence": "reports/cl_pro_relationships.tsv",
-          "notes": ""
-        }
-      ],
-      "pro_ids": [
-        "PR:000001332"
-      ],
-      "gene_symbols": [
-        "CEACAM8"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "CD66B",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#CD66b",
-        "registry_sha256": "42305fda07fd524b609244d79f171598c6b1b1b879466170789a47c30bc9033a"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "CD8",
-      "affected_subjects": [
-        "SOULCAP:SC000047",
-        "SOULCAP:SC000048",
-        "SOULCAP:SC000050",
-        "SOULCAP:SC000051",
-        "SOULCAP:SC000052",
-        "SOULCAP:SC000053",
-        "SOULCAP:SC000055",
-        "SOULCAP:SC000056",
-        "SOULCAP:SC000057",
-        "SOULCAP:SC000058",
-        "SOULCAP:SC000062",
-        "SOULCAP:SC000063",
-        "SOULCAP:SC000064",
-        "SOULCAP:SC000065",
-        "SOULCAP:SC000066",
-        "SOULCAP:SC000067",
-        "SOULCAP:SC000068",
-        "SOULCAP:SC000069",
-        "SOULCAP:SC000070",
-        "SOULCAP:SC000071",
-        "SOULCAP:SC000072",
-        "SOULCAP:SC000073",
-        "SOULCAP:SC000115",
-        "SOULCAP:SC000116",
-        "SOULCAP:SC000117",
-        "SOULCAP:SC000118",
-        "SOULCAP:SC000119",
-        "SOULCAP:SC000121"
-      ],
-      "records": [
-        {
-          "marker_token": "CD8",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:000001084",
-          "pro_label": "T-cell surface glycoprotein CD8 alpha chain",
-          "uniprot_id": "P01732",
-          "uniprot_label": "T-cell surface glycoprotein CD8 alpha chain",
-          "gene_symbol": "CD8A",
-          "hgnc_id": "HGNC:1706",
-          "ncbi_gene_id": "",
-          "mapping_method": "cl_pro_tsv",
-          "confidence": "high",
-          "evidence": "reports/cl_pro_relationships.tsv",
-          "notes": ""
-        }
-      ],
-      "pro_ids": [
-        "PR:000001084"
-      ],
-      "gene_symbols": [
-        "CD8A"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "CD8",
-        "representation": "unresolved",
-        "protein_resolution": "withhold",
-        "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#CD8",
-        "registry_sha256": "846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "CXCR3",
-      "affected_subjects": [
-        "SOULCAP:SC000115"
-      ],
-      "records": [
-        {
-          "marker_token": "CXCR3",
-          "marker_synonyms": "CXCR3|CD183",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:000001207",
-          "pro_label": "C-X-C chemokine receptor type 3",
-          "uniprot_id": "P49682",
-          "uniprot_label": "C-X-C chemokine receptor type 3",
-          "gene_symbol": "CXCR3",
-          "hgnc_id": "HGNC:4540",
-          "ncbi_gene_id": "",
-          "mapping_method": "inferred",
-          "confidence": "high",
-          "evidence": "reports/cl_pro_relationships.tsv",
-          "notes": ""
-        }
-      ],
-      "pro_ids": [
-        "PR:000001207"
-      ],
-      "gene_symbols": [
-        "CXCR3"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "CXCR3",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#CXCR3",
-        "registry_sha256": "6620e8f0b53cd1ecfa795de32156537b7835bfbfb2e7a46195c7b9a4a6d21507"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "CXCR5",
-      "affected_subjects": [
-        "SOULCAP:SC000115"
-      ],
-      "records": [
-        {
-          "marker_token": "CXCR5",
-          "marker_synonyms": "CXCR5|CD185",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:000001209",
-          "pro_label": "C-X-C chemokine receptor type 5",
-          "uniprot_id": "P32302",
-          "uniprot_label": "C-X-C chemokine receptor type 5",
-          "gene_symbol": "CXCR5",
-          "hgnc_id": "HGNC:1060",
-          "ncbi_gene_id": "",
-          "mapping_method": "inferred",
-          "confidence": "high",
-          "evidence": "reports/cl_pro_relationships.tsv",
-          "notes": ""
-        }
-      ],
-      "pro_ids": [
-        "PR:000001209"
-      ],
-      "gene_symbols": [
-        "CXCR5"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "CXCR5",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#CXCR5",
-        "registry_sha256": "edfd11e18c37d49e6723778e16efd44bf98358fa84f3882908d38fd87bcb79c1"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "FceR1a",
-      "affected_subjects": [
-        "SOULCAP:SC000012",
-        "SOULCAP:SC000013",
-        "SOULCAP:SC000014",
-        "SOULCAP:SC000015"
-      ],
-      "records": [
-        {
-          "marker_token": "FceR1a",
-          "marker_synonyms": "",
-          "source_columns": "Ideal phenotypic markers|Required phenotypic markers",
-          "pro_id": "PR:000007431",
-          "pro_label": "high affinity immunoglobulin epsilon receptor subunit alpha",
-          "uniprot_id": "",
-          "uniprot_label": "high affinity immunoglobulin epsilon receptor subunit alpha",
-          "gene_symbol": "",
-          "hgnc_id": "",
-          "ncbi_gene_id": "",
-          "mapping_method": "ols4",
-          "confidence": "high",
-          "evidence": "https://www.ebi.ac.uk/ols4/api/search?q=FCER1A&ontology=pr; https://nodenormalization-sri.renci.org/1.3/get_normalized_nodes?curie=PR:000007431",
-          "notes": "high-affinity IgE receptor alpha chain"
-        }
-      ],
-      "pro_ids": [
-        "PR:000007431"
-      ],
-      "gene_symbols": [],
-      "ncbi_gene_ids": [],
-      "identifier_status": "no_gene_mapping",
-      "status": "no_gene_mapping",
-      "status_reason": "PRO identifier recorded, but no gene symbol or documented representation exception; review is needed.",
-      "resolution_policy": {
-        "marker_token": "FCER1A",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#FceR1a",
-        "registry_sha256": "0ffb585d4dc904f1d78456c5f8ae18e3d3c7e53e0a0addf4306a7654eec5884a"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "HLA-DR",
-      "affected_subjects": [
-        "SOULCAP:SC000001",
-        "SOULCAP:SC000002",
-        "SOULCAP:SC000003",
-        "SOULCAP:SC000004",
-        "SOULCAP:SC000005",
-        "SOULCAP:SC000007",
-        "SOULCAP:SC000008",
-        "SOULCAP:SC000009",
-        "SOULCAP:SC000010",
-        "SOULCAP:SC000011",
-        "SOULCAP:SC000012",
-        "SOULCAP:SC000013",
-        "SOULCAP:SC000015",
-        "SOULCAP:SC000021",
-        "SOULCAP:SC000022",
-        "SOULCAP:SC000023",
-        "SOULCAP:SC000024",
-        "SOULCAP:SC000025",
-        "SOULCAP:SC000026",
-        "SOULCAP:SC000028",
-        "SOULCAP:SC000029",
-        "SOULCAP:SC000030",
-        "SOULCAP:SC000031",
-        "SOULCAP:SC000032",
-        "SOULCAP:SC000033",
-        "SOULCAP:SC000034",
-        "SOULCAP:SC000035",
-        "SOULCAP:SC000036",
-        "SOULCAP:SC000037",
-        "SOULCAP:SC000038",
-        "SOULCAP:SC000039",
-        "SOULCAP:SC000040",
-        "SOULCAP:SC000041",
-        "SOULCAP:SC000042",
-        "SOULCAP:SC000043",
-        "SOULCAP:SC000044",
-        "SOULCAP:SC000045",
-        "SOULCAP:SC000046",
-        "SOULCAP:SC000047",
-        "SOULCAP:SC000048",
-        "SOULCAP:SC000049",
-        "SOULCAP:SC000050",
-        "SOULCAP:SC000051",
-        "SOULCAP:SC000052",
-        "SOULCAP:SC000053",
-        "SOULCAP:SC000054",
-        "SOULCAP:SC000055",
-        "SOULCAP:SC000056",
-        "SOULCAP:SC000057",
-        "SOULCAP:SC000058",
-        "SOULCAP:SC000059",
-        "SOULCAP:SC000060",
-        "SOULCAP:SC000061",
-        "SOULCAP:SC000062",
-        "SOULCAP:SC000063",
-        "SOULCAP:SC000064",
-        "SOULCAP:SC000065",
-        "SOULCAP:SC000066",
-        "SOULCAP:SC000067",
-        "SOULCAP:SC000068",
-        "SOULCAP:SC000069",
-        "SOULCAP:SC000070",
-        "SOULCAP:SC000071",
-        "SOULCAP:SC000072",
-        "SOULCAP:SC000073",
-        "SOULCAP:SC000074",
-        "SOULCAP:SC000075",
-        "SOULCAP:SC000076",
-        "SOULCAP:SC000077",
-        "SOULCAP:SC000078",
-        "SOULCAP:SC000079",
-        "SOULCAP:SC000080",
-        "SOULCAP:SC000081",
-        "SOULCAP:SC000082",
-        "SOULCAP:SC000083",
-        "SOULCAP:SC000084",
-        "SOULCAP:SC000085",
-        "SOULCAP:SC000086",
-        "SOULCAP:SC000087",
-        "SOULCAP:SC000088",
-        "SOULCAP:SC000089",
-        "SOULCAP:SC000090",
-        "SOULCAP:SC000091",
-        "SOULCAP:SC000092",
-        "SOULCAP:SC000093",
-        "SOULCAP:SC000094",
-        "SOULCAP:SC000095",
-        "SOULCAP:SC000096",
-        "SOULCAP:SC000097",
-        "SOULCAP:SC000098",
-        "SOULCAP:SC000099",
-        "SOULCAP:SC000100",
-        "SOULCAP:SC000101",
-        "SOULCAP:SC000102",
-        "SOULCAP:SC000103",
-        "SOULCAP:SC000104",
-        "SOULCAP:SC000105",
-        "SOULCAP:SC000106",
-        "SOULCAP:SC000107",
-        "SOULCAP:SC000108",
-        "SOULCAP:SC000109",
-        "SOULCAP:SC000110",
-        "SOULCAP:SC000111",
-        "SOULCAP:SC000112",
-        "SOULCAP:SC000113",
-        "SOULCAP:SC000114",
-        "SOULCAP:SC000115",
-        "SOULCAP:SC000116",
-        "SOULCAP:SC000117",
-        "SOULCAP:SC000118",
-        "SOULCAP:SC000119",
-        "SOULCAP:SC000120",
-        "SOULCAP:SC000121",
-        "SOULCAP:SC000122",
-        "SOULCAP:SC000123",
-        "SOULCAP:SC000124",
-        "SOULCAP:SC000125",
-        "SOULCAP:SC000126",
-        "SOULCAP:SC000127"
-      ],
-      "records": [
-        {
-          "marker_token": "HLA-DR",
-          "marker_synonyms": "",
-          "source_columns": "Ideal exclusion|Ideal phenotypic markers|Required phenotypic markers",
-          "pro_id": "PR:000002015",
-          "pro_label": "MHC class II histocompatibility antigen alpha chain DRA",
-          "uniprot_id": "",
-          "uniprot_label": "MHC class II histocompatibility antigen alpha chain DRA",
-          "gene_symbol": "",
-          "hgnc_id": "",
-          "ncbi_gene_id": "",
-          "mapping_method": "ols4",
-          "confidence": "high",
-          "evidence": "https://www.ebi.ac.uk/ols4/api/search?q=HLA-DRA&ontology=pr; https://nodenormalization-sri.renci.org/1.3/get_normalized_nodes?curie=PR:000002015",
-          "notes": "HLA-DR is a heterodimer of HLA-DRA + HLA-DRB1; mapped to HLA-DRA as primary chain"
-        }
-      ],
-      "pro_ids": [
-        "PR:000002015"
-      ],
-      "gene_symbols": [],
-      "ncbi_gene_ids": [],
-      "identifier_status": "no_gene_mapping",
-      "status": "documented_complex_or_family",
-      "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.",
-      "resolution_policy": {
-        "marker_token": "HLA-DR",
-        "representation": "complex",
-        "protein_resolution": "withhold",
-        "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#HLA-DR",
-        "registry_sha256": "c7b6d01f0a4eaffefce1df3c4a53407d958d2f032e03a9ce22f0354adbdded3c"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "IFNg",
-      "affected_subjects": [
-        "SOULCAP:SC000116"
-      ],
-      "records": [
-        {
-          "marker_token": "IFNg",
-          "marker_synonyms": "",
-          "source_columns": "Ideal phenotypic markers",
-          "pro_id": "PR:P01579",
-          "pro_label": "interferon gamma (human)",
-          "uniprot_id": "P01579",
-          "uniprot_label": "interferon gamma",
-          "gene_symbol": "IFNG",
-          "hgnc_id": "HGNC:5438",
-          "ncbi_gene_id": "",
-          "mapping_method": "monarch",
-          "confidence": "high",
-          "evidence": "https://rest.genenames.org/fetch/symbol/IFNG; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_P01579",
-          "notes": "intracellular marker"
-        }
-      ],
-      "pro_ids": [
-        "PR:P01579"
-      ],
-      "gene_symbols": [
-        "IFNG"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "IFNG",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#IFNg",
-        "registry_sha256": "984c2f8cfe641da02a4d92ac78be3e3595127852ff7b8d67acacc0ae3361b8ba"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "IL-13",
-      "affected_subjects": [
-        "SOULCAP:SC000112",
-        "SOULCAP:SC000116",
-        "SOULCAP:SC000117"
-      ],
-      "records": [
-        {
-          "marker_token": "IL-13",
-          "marker_synonyms": "",
-          "source_columns": "Ideal phenotypic markers",
-          "pro_id": "PR:P35225",
-          "pro_label": "interleukin-13 (human)",
-          "uniprot_id": "P35225",
-          "uniprot_label": "interleukin 13",
-          "gene_symbol": "IL13",
-          "hgnc_id": "HGNC:5973",
-          "ncbi_gene_id": "",
-          "mapping_method": "monarch",
-          "confidence": "high",
-          "evidence": "https://rest.genenames.org/fetch/symbol/IL13; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_P35225",
-          "notes": "intracellular marker"
-        }
-      ],
-      "pro_ids": [
-        "PR:P35225"
-      ],
-      "gene_symbols": [
-        "IL13"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "IL-13",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#IL-13",
-        "registry_sha256": "0fea4e3f83d693c4bb37136de36e615363c0203996bd448c7b9c442f33cda6be"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "IL-17a",
-      "affected_subjects": [
-        "SOULCAP:SC000114",
-        "SOULCAP:SC000119"
-      ],
-      "records": [
-        {
-          "marker_token": "IL-17a",
-          "marker_synonyms": "",
-          "source_columns": "Ideal phenotypic markers",
-          "pro_id": "PR:Q16552",
-          "pro_label": "interleukin-17A (human)",
-          "uniprot_id": "Q16552",
-          "uniprot_label": "interleukin 17A",
-          "gene_symbol": "IL17A",
-          "hgnc_id": "HGNC:5981",
-          "ncbi_gene_id": "",
-          "mapping_method": "monarch",
-          "confidence": "high",
-          "evidence": "https://rest.genenames.org/fetch/symbol/IL17A; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_Q16552",
-          "notes": "intracellular marker"
-        }
-      ],
-      "pro_ids": [
-        "PR:Q16552"
-      ],
-      "gene_symbols": [
-        "IL17A"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "IL-17A",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#IL-17a",
-        "registry_sha256": "92fcb16f42e797476ce20b25717efcfa123fc60b9e8e0f979c01aefecba1fe2e"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "IL-4",
-      "affected_subjects": [
-        "SOULCAP:SC000112",
-        "SOULCAP:SC000116",
-        "SOULCAP:SC000117"
-      ],
-      "records": [
-        {
-          "marker_token": "IL-4",
-          "marker_synonyms": "",
-          "source_columns": "Ideal phenotypic markers",
-          "pro_id": "PR:P05112",
-          "pro_label": "interleukin-4 (human)",
-          "uniprot_id": "P05112",
-          "uniprot_label": "interleukin 4",
-          "gene_symbol": "IL4",
-          "hgnc_id": "HGNC:6014",
-          "ncbi_gene_id": "",
-          "mapping_method": "monarch",
-          "confidence": "high",
-          "evidence": "https://rest.genenames.org/fetch/symbol/IL4; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_P05112",
-          "notes": "intracellular marker"
-        }
-      ],
-      "pro_ids": [
-        "PR:P05112"
-      ],
-      "gene_symbols": [
-        "IL4"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "IL-4",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#IL-4",
-        "registry_sha256": "b73d688d701631fa8fe4c1db97221effb5ee895dad8fec7fdf4b77373958ee3c"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "IL-5",
-      "affected_subjects": [
-        "SOULCAP:SC000112",
-        "SOULCAP:SC000116",
-        "SOULCAP:SC000117"
-      ],
-      "records": [
-        {
-          "marker_token": "IL-5",
-          "marker_synonyms": "",
-          "source_columns": "Ideal phenotypic markers",
-          "pro_id": "PR:P05113",
-          "pro_label": "interleukin-5 (human)",
-          "uniprot_id": "P05113",
-          "uniprot_label": "interleukin 5",
-          "gene_symbol": "IL5",
-          "hgnc_id": "HGNC:6016",
-          "ncbi_gene_id": "",
-          "mapping_method": "monarch",
-          "confidence": "high",
-          "evidence": "https://rest.genenames.org/fetch/symbol/IL5; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_P05113",
-          "notes": "intracellular marker"
-        }
-      ],
-      "pro_ids": [
-        "PR:P05113"
-      ],
-      "gene_symbols": [
-        "IL5"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "IL-5",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#IL-5",
-        "registry_sha256": "9359347c3979d2efe87eed401c1bab949de52f4c187ebecafa6336c6327a25cd"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "IL-9",
-      "affected_subjects": [
-        "SOULCAP:SC000113",
-        "SOULCAP:SC000118"
-      ],
-      "records": [
-        {
-          "marker_token": "IL-9",
-          "marker_synonyms": "",
-          "source_columns": "Ideal phenotypic markers",
-          "pro_id": "PR:P15248",
-          "pro_label": "interleukin-9 (human)",
-          "uniprot_id": "P15248",
-          "uniprot_label": "interleukin 9",
-          "gene_symbol": "IL9",
-          "hgnc_id": "HGNC:6029",
-          "ncbi_gene_id": "",
-          "mapping_method": "monarch",
-          "confidence": "high",
-          "evidence": "https://rest.genenames.org/fetch/symbol/IL9; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_P15248",
-          "notes": "intracellular marker"
-        }
-      ],
-      "pro_ids": [
-        "PR:P15248"
-      ],
-      "gene_symbols": [
-        "IL9"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "IL-9",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#IL-9",
-        "registry_sha256": "9894867ba02520d0af6c0bf4858b55237d8a74be1be3dadaf0721b3a768ab686"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "IgA",
-      "affected_subjects": [
-        "SOULCAP:SC000042",
-        "SOULCAP:SC000043",
-        "SOULCAP:SC000044"
-      ],
-      "records": [
-        {
-          "marker_token": "IgA",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "",
-          "pro_label": "",
-          "uniprot_id": "",
-          "uniprot_label": "",
-          "gene_symbol": "",
-          "hgnc_id": "",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "low",
-          "evidence": "",
-          "notes": "Immunoglobulin heavy-chain class A; encoded by IGHA1 and IGHA2 gene family. No single PR ID or UniProt accession covers all isotypes."
-        }
-      ],
-      "pro_ids": [],
-      "gene_symbols": [],
-      "ncbi_gene_ids": [],
-      "identifier_status": "no_pro_mapping",
-      "status": "documented_complex_or_family",
-      "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.",
-      "resolution_policy": {
-        "marker_token": "IGA",
-        "representation": "protein_family",
-        "protein_resolution": "withhold",
-        "rationale": "Registry notes document a non-single-protein or pan-marker representation.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#IgA",
-        "registry_sha256": "61ac45fc138bab46fc31d71e42363d20de18a9585ff4717fb02702cbb03c6685"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "IgD",
-      "affected_subjects": [
-        "SOULCAP:SC000030",
-        "SOULCAP:SC000031",
-        "SOULCAP:SC000032",
-        "SOULCAP:SC000033",
-        "SOULCAP:SC000034",
-        "SOULCAP:SC000035",
-        "SOULCAP:SC000036",
-        "SOULCAP:SC000038",
-        "SOULCAP:SC000039",
-        "SOULCAP:SC000040",
-        "SOULCAP:SC000041",
-        "SOULCAP:SC000042",
-        "SOULCAP:SC000043",
-        "SOULCAP:SC000044"
-      ],
-      "records": [
-        {
-          "marker_token": "IgD",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "",
-          "pro_label": "",
-          "uniprot_id": "",
-          "uniprot_label": "",
-          "gene_symbol": "",
-          "hgnc_id": "",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "low",
-          "evidence": "",
-          "notes": "Immunoglobulin heavy-chain class D; encoded by IGHD. No single PR ID or UniProt accession."
-        }
-      ],
-      "pro_ids": [],
-      "gene_symbols": [],
-      "ncbi_gene_ids": [],
-      "identifier_status": "no_pro_mapping",
-      "status": "documented_complex_or_family",
-      "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.",
-      "resolution_policy": {
-        "marker_token": "IGD",
-        "representation": "protein_family",
-        "protein_resolution": "withhold",
-        "rationale": "Registry notes document a non-single-protein or pan-marker representation.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#IgD",
-        "registry_sha256": "e4a5f79157c47b9a0e3fccb6d6eb144d50c93d7fb5f71224bd825f3e09adfb52"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "IgE",
-      "affected_subjects": [
-        "SOULCAP:SC000033",
-        "SOULCAP:SC000036",
-        "SOULCAP:SC000042",
-        "SOULCAP:SC000043",
-        "SOULCAP:SC000044"
-      ],
-      "records": [
-        {
-          "marker_token": "IgE",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "",
-          "pro_label": "",
-          "uniprot_id": "",
-          "uniprot_label": "",
-          "gene_symbol": "",
-          "hgnc_id": "",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "low",
-          "evidence": "",
-          "notes": "Immunoglobulin heavy-chain class E; encoded by IGHE. No single PR ID or UniProt accession."
-        }
-      ],
-      "pro_ids": [],
-      "gene_symbols": [],
-      "ncbi_gene_ids": [],
-      "identifier_status": "no_pro_mapping",
-      "status": "documented_complex_or_family",
-      "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.",
-      "resolution_policy": {
-        "marker_token": "IGE",
-        "representation": "protein_family",
-        "protein_resolution": "withhold",
-        "rationale": "Registry notes document a non-single-protein or pan-marker representation.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#IgE",
-        "registry_sha256": "67b95e398fb1095e4c4a380091f0dae23dec9025456defdd9d0f5f254740da2e"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "IgG",
-      "affected_subjects": [
-        "SOULCAP:SC000042",
-        "SOULCAP:SC000043",
-        "SOULCAP:SC000044"
-      ],
-      "records": [
-        {
-          "marker_token": "IgG",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "",
-          "pro_label": "",
-          "uniprot_id": "",
-          "uniprot_label": "",
-          "gene_symbol": "",
-          "hgnc_id": "",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "low",
-          "evidence": "",
-          "notes": "Immunoglobulin heavy-chain class G; encoded by IGHG1/IGHG2/IGHG3/IGHG4 gene family. No single PR ID or UniProt accession covers all subclasses."
-        }
-      ],
-      "pro_ids": [],
-      "gene_symbols": [],
-      "ncbi_gene_ids": [],
-      "identifier_status": "no_pro_mapping",
-      "status": "documented_complex_or_family",
-      "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.",
-      "resolution_policy": {
-        "marker_token": "IGG",
-        "representation": "protein_family",
-        "protein_resolution": "withhold",
-        "rationale": "Registry notes document a non-single-protein or pan-marker representation.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#IgG",
-        "registry_sha256": "c51e1dd6ae671fd9db387be6d0a26fdce6645e0f6a00d14891c0922708a941e7"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "IgM",
-      "affected_subjects": [
-        "SOULCAP:SC000038",
-        "SOULCAP:SC000039",
-        "SOULCAP:SC000040",
-        "SOULCAP:SC000041",
-        "SOULCAP:SC000042",
-        "SOULCAP:SC000043",
-        "SOULCAP:SC000044"
-      ],
-      "records": [
-        {
-          "marker_token": "IgM",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "",
-          "pro_label": "",
-          "uniprot_id": "",
-          "uniprot_label": "",
-          "gene_symbol": "",
-          "hgnc_id": "",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "low",
-          "evidence": "",
-          "notes": "Immunoglobulin heavy-chain class M; encoded by IGHM. No single PR ID or UniProt accession."
-        }
-      ],
-      "pro_ids": [],
-      "gene_symbols": [],
-      "ncbi_gene_ids": [],
-      "identifier_status": "no_pro_mapping",
-      "status": "documented_complex_or_family",
-      "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.",
-      "resolution_policy": {
-        "marker_token": "IGM",
-        "representation": "protein_family",
-        "protein_resolution": "withhold",
-        "rationale": "Registry notes document a non-single-protein or pan-marker representation.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#IgM",
-        "registry_sha256": "fc17667826dd44b6b08bd4cb257f3d4fa23fdbf477c3da79386cb427b0d2f88d"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "MR1",
-      "affected_subjects": [],
-      "records": [
-        {
-          "marker_token": "MR1",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:Q95460",
-          "pro_label": "major histocompatibility complex class I-related protein 1 (human)",
-          "uniprot_id": "Q95460",
-          "uniprot_label": "major histocompatibility complex, class I-related",
-          "gene_symbol": "MR1",
-          "hgnc_id": "HGNC:4975",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "high",
-          "evidence": "https://rest.genenames.org/fetch/symbol/MR1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_Q95460",
-          "notes": "MHC-related protein 1; also used as 'MR1 tetramer' reagent for MAIT cell detection"
-        }
-      ],
-      "pro_ids": [
-        "PR:Q95460"
-      ],
-      "gene_symbols": [
-        "MR1"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "MR1",
-        "representation": "unresolved",
-        "protein_resolution": "withhold",
-        "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#MR1",
-        "registry_sha256": "96c5bf22b0be1d144cf60f175968b19c1485c64c4866d4a109f636a9c9af703d"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "TCR",
-      "affected_subjects": [
-        "SOULCAP:SC000122",
-        "SOULCAP:SC000123"
-      ],
-      "records": [
-        {
-          "marker_token": "TCR",
-          "marker_synonyms": "",
-          "source_columns": "Ideal phenotypic markers|Required phenotypic markers",
-          "pro_id": "",
-          "pro_label": "",
-          "uniprot_id": "",
-          "uniprot_label": "",
-          "gene_symbol": "",
-          "hgnc_id": "",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "medium",
-          "evidence": "",
-          "notes": "pan-TCR marker; not specific to a single gene"
-        }
-      ],
-      "pro_ids": [],
-      "gene_symbols": [],
-      "ncbi_gene_ids": [],
-      "identifier_status": "no_pro_mapping",
-      "status": "documented_complex_or_family",
-      "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.",
-      "resolution_policy": {
-        "marker_token": "TCR",
-        "representation": "protein_family",
-        "protein_resolution": "withhold",
-        "rationale": "Registry notes document a non-single-protein or pan-marker representation.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#TCR",
-        "registry_sha256": "9a617aa9a766194134020d7afa5feca696fc92cb187377eb72b2bb326d40cae7"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "TCRVa24",
-      "affected_subjects": [],
-      "records": [
-        {
-          "marker_token": "TCRVa24",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:A0A0B4J240",
-          "pro_label": "T cell receptor alpha variable 10 (human)",
-          "uniprot_id": "A0A0B4J240",
-          "uniprot_label": "T cell receptor alpha variable 10 (human)",
-          "gene_symbol": "TRAV10",
-          "hgnc_id": "HGNC:12103",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "medium",
-          "evidence": "https://rest.genenames.org/fetch/symbol/TRAV10; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J240",
-          "notes": "IMGT nomenclature: TRAV10"
-        }
-      ],
-      "pro_ids": [
-        "PR:A0A0B4J240"
-      ],
-      "gene_symbols": [
-        "TRAV10"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "TCRVA24",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVa24",
-        "registry_sha256": "f81c80eeaa4d2de919813822e062fe2e4210b8a025bd76ebbad546bdd0936315"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "TCRVa24-Ja18",
-      "affected_subjects": [],
-      "records": [
-        {
-          "marker_token": "TCRVa24-Ja18",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:A0A0B4J240",
-          "pro_label": "T cell receptor alpha variable 10 (human)",
-          "uniprot_id": "A0A0B4J240",
-          "uniprot_label": "T cell receptor alpha variable 10 (human)",
-          "gene_symbol": "TRAV10",
-          "hgnc_id": "HGNC:12103",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "medium",
-          "evidence": "https://rest.genenames.org/fetch/symbol/TRAV10; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J240",
-          "notes": "Invariant iNKT TCR chain; two-gene marker TRAV10+TRAJ18; gene_symbol populated with TRAV10 as primary TRAV gene"
-        }
-      ],
-      "pro_ids": [
-        "PR:A0A0B4J240"
-      ],
-      "gene_symbols": [
-        "TRAV10"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "documented_complex_or_family",
-      "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.",
-      "resolution_policy": {
-        "marker_token": "TCRVA24-JA18",
-        "representation": "complex",
-        "protein_resolution": "withhold",
-        "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVa24-Ja18",
-        "registry_sha256": "aad1afeeb19ea59d1c85741576656d0bf629f1500ac86d389d008e5adc327020"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "TCRVa7.2",
-      "affected_subjects": [],
-      "records": [
-        {
-          "marker_token": "TCRVa7.2",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:A0A0B4J238",
-          "pro_label": "T cell receptor alpha variable 1-2 (human)",
-          "uniprot_id": "A0A0B4J238",
-          "uniprot_label": "T cell receptor alpha variable 1-2 (human)",
-          "gene_symbol": "TRAV1-2",
-          "hgnc_id": "HGNC:12102",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "medium",
-          "evidence": "https://rest.genenames.org/fetch/symbol/TRAV1-2; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J238",
-          "notes": "IMGT nomenclature: TRAV1-2"
-        }
-      ],
-      "pro_ids": [
-        "PR:A0A0B4J238"
-      ],
-      "gene_symbols": [
-        "TRAV1-2"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "TCRVA7.2",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVa7.2",
-        "registry_sha256": "1917c912d25db47ddf31fdee753f0093f18dfb1fcf080f5a2dcc9a53cdd490a5"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "TCRVb11",
-      "affected_subjects": [],
-      "records": [
-        {
-          "marker_token": "TCRVb11",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:A0A075B6N4",
-          "pro_label": "T cell receptor beta variable 25-1 (human)",
-          "uniprot_id": "A0A075B6N4",
-          "uniprot_label": "T cell receptor beta variable 25-1 (human)",
-          "gene_symbol": "TRBV25-1",
-          "hgnc_id": "HGNC:12205",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "medium",
-          "evidence": "https://rest.genenames.org/fetch/symbol/TRBV25-1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A075B6N4",
-          "notes": "IMGT nomenclature: TRBV25-1"
-        }
-      ],
-      "pro_ids": [
-        "PR:A0A075B6N4"
-      ],
-      "gene_symbols": [
-        "TRBV25-1"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "TCRVB11",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVb11",
-        "registry_sha256": "3b0361d975e31467580067f5d17823f53d425f9d2b5ef44745fee1aba08ca941"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "TCRVd2",
-      "affected_subjects": [
-        "SOULCAP:SC000122"
-      ],
-      "records": [
-        {
-          "marker_token": "TCRVd2",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:A0JD36",
-          "pro_label": "T cell receptor delta variable 2 (human)",
-          "uniprot_id": "A0JD36",
-          "uniprot_label": "T cell receptor delta variable 2 (human)",
-          "gene_symbol": "TRDV2",
-          "hgnc_id": "HGNC:12263",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "medium",
-          "evidence": "https://rest.genenames.org/fetch/symbol/TRDV2; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0JD36",
-          "notes": "IMGT nomenclature: TRDV2"
-        }
-      ],
-      "pro_ids": [
-        "PR:A0JD36"
-      ],
-      "gene_symbols": [
-        "TRDV2"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "TCRVD2",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVd2",
-        "registry_sha256": "5fb0b153ecc148621ec7c97ffea4618dcaf12f3f62d1642acfb303c5179ef2ec"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "TCRVg9",
-      "affected_subjects": [
-        "SOULCAP:SC000122"
-      ],
-      "records": [
-        {
-          "marker_token": "TCRVg9",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:Q99603",
-          "pro_label": "T cell receptor gamma variable 9 (human)",
-          "uniprot_id": "Q99603",
-          "uniprot_label": "T cell receptor gamma variable 9 (human)",
-          "gene_symbol": "TRGV9",
-          "hgnc_id": "HGNC:12295",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "medium",
-          "evidence": "https://rest.genenames.org/fetch/symbol/TRGV9; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_Q99603",
-          "notes": "IMGT nomenclature: TRGV9"
-        }
-      ],
-      "pro_ids": [
-        "PR:Q99603"
-      ],
-      "gene_symbols": [
-        "TRGV9"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "TCRVG9",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVg9",
-        "registry_sha256": "9318391135642e811b2781de7a9be4cc58f52c5f21dbfe8a0d316f3619f245f1"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "TCRab",
-      "affected_subjects": [
-        "SOULCAP:SC000049",
-        "SOULCAP:SC000050",
-        "SOULCAP:SC000051",
-        "SOULCAP:SC000052",
-        "SOULCAP:SC000053",
-        "SOULCAP:SC000054",
-        "SOULCAP:SC000055",
-        "SOULCAP:SC000056",
-        "SOULCAP:SC000057",
-        "SOULCAP:SC000058",
-        "SOULCAP:SC000060",
-        "SOULCAP:SC000061",
-        "SOULCAP:SC000066",
-        "SOULCAP:SC000067",
-        "SOULCAP:SC000068",
-        "SOULCAP:SC000069",
-        "SOULCAP:SC000070",
-        "SOULCAP:SC000071",
-        "SOULCAP:SC000072",
-        "SOULCAP:SC000073",
-        "SOULCAP:SC000122"
-      ],
-      "records": [
-        {
-          "marker_token": "TCRab",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "",
-          "pro_label": "",
-          "uniprot_id": "",
-          "uniprot_label": "",
-          "gene_symbol": "",
-          "hgnc_id": "",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "medium",
-          "evidence": "",
-          "notes": "pan-αβ TCR marker; recognises assembled αβ heterodimer"
-        }
-      ],
-      "pro_ids": [],
-      "gene_symbols": [],
-      "ncbi_gene_ids": [],
-      "identifier_status": "no_pro_mapping",
-      "status": "documented_complex_or_family",
-      "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.",
-      "resolution_policy": {
-        "marker_token": "TCRAB",
-        "representation": "complex",
-        "protein_resolution": "withhold",
-        "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#TCRab",
-        "registry_sha256": "db65f2afbe24e19148fe8039a5a7df5983c5e9d0963d9cff9dec278958e33382"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "TCRgd",
-      "affected_subjects": [
-        "SOULCAP:SC000049",
-        "SOULCAP:SC000050",
-        "SOULCAP:SC000051",
-        "SOULCAP:SC000052",
-        "SOULCAP:SC000053",
-        "SOULCAP:SC000054",
-        "SOULCAP:SC000055",
-        "SOULCAP:SC000056",
-        "SOULCAP:SC000057",
-        "SOULCAP:SC000058",
-        "SOULCAP:SC000060",
-        "SOULCAP:SC000061",
-        "SOULCAP:SC000066",
-        "SOULCAP:SC000067",
-        "SOULCAP:SC000068",
-        "SOULCAP:SC000069",
-        "SOULCAP:SC000070",
-        "SOULCAP:SC000071",
-        "SOULCAP:SC000072",
-        "SOULCAP:SC000073",
-        "SOULCAP:SC000122"
-      ],
-      "records": [
-        {
-          "marker_token": "TCRgd",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "",
-          "pro_label": "",
-          "uniprot_id": "",
-          "uniprot_label": "",
-          "gene_symbol": "",
-          "hgnc_id": "",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "medium",
-          "evidence": "",
-          "notes": "pan-γδ TCR marker; recognises assembled γδ heterodimer"
-        }
-      ],
-      "pro_ids": [],
-      "gene_symbols": [],
-      "ncbi_gene_ids": [],
-      "identifier_status": "no_pro_mapping",
-      "status": "documented_complex_or_family",
-      "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.",
-      "resolution_policy": {
-        "marker_token": "TCRGD",
-        "representation": "complex",
-        "protein_resolution": "withhold",
-        "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#TCRgd",
-        "registry_sha256": "49ec8f76a1338a63effb3e88e3c748f97f2753861e47ad476c1f4a96384b40ec"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "TCRva24",
-      "affected_subjects": [],
-      "records": [
-        {
-          "marker_token": "TCRva24",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:A0A0B4J240",
-          "pro_label": "T cell receptor alpha variable 10 (human)",
-          "uniprot_id": "A0A0B4J240",
-          "uniprot_label": "T cell receptor alpha variable 10 (human)",
-          "gene_symbol": "TRAV10",
-          "hgnc_id": "HGNC:12103",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "medium",
-          "evidence": "https://rest.genenames.org/fetch/symbol/TRAV10; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J240",
-          "notes": "Likely duplicate of TCRVa24 (different capitalisation) — data quality issue; mapped identically to TCRVa24 / TRAV10"
-        }
-      ],
-      "pro_ids": [
-        "PR:A0A0B4J240"
-      ],
-      "gene_symbols": [
-        "TRAV10"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "TCRVA24",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVa24",
-        "registry_sha256": "f81c80eeaa4d2de919813822e062fe2e4210b8a025bd76ebbad546bdd0936315"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "Tetramer",
-      "affected_subjects": [],
-      "records": [
-        {
-          "marker_token": "Tetramer",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "",
-          "pro_label": "",
-          "uniprot_id": "",
-          "uniprot_label": "",
-          "gene_symbol": "",
-          "hgnc_id": "",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "low",
-          "evidence": "",
-          "notes": "generic reagent term; not a specific protein"
-        }
-      ],
-      "pro_ids": [],
-      "gene_symbols": [],
-      "ncbi_gene_ids": [],
-      "identifier_status": "no_pro_mapping",
-      "status": "documented_nonprotein_or_reagent",
-      "status_reason": "Registry notes document a non-protein gate or reagent; a single gene/PRO mapping may not apply.",
-      "resolution_policy": {
-        "marker_token": "TETRAMER",
-        "representation": "reagent_gate",
-        "protein_resolution": "withhold",
-        "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#Tetramer",
-        "registry_sha256": "2f3894386ee2918f58d53b858eebc8e09729f16699a8f9d6faab2d5900495227"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "V",
-      "affected_subjects": [
-        "SOULCAP:SC000122",
-        "SOULCAP:SC000123"
-      ],
-      "records": [
-        {
-          "marker_token": "V",
-          "marker_synonyms": "",
-          "source_columns": "Ideal phenotypic markers|Required phenotypic markers",
-          "pro_id": "",
-          "pro_label": "",
-          "uniprot_id": "",
-          "uniprot_label": "",
-          "gene_symbol": "",
-          "hgnc_id": "",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "low",
-          "evidence": "",
-          "notes": "likely parsing artifact from multi-word TCR gene name — data quality issue; see reports/marker_validation.md"
-        }
-      ],
-      "pro_ids": [],
-      "gene_symbols": [],
-      "ncbi_gene_ids": [],
-      "identifier_status": "no_pro_mapping",
-      "status": "source_artifact_needs_review",
-      "status_reason": "Registry notes describe a possible parsing artifact; source clarification is needed.",
-      "resolution_policy": {
-        "marker_token": "V",
-        "representation": "unresolved",
-        "protein_resolution": "withhold",
-        "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#V",
-        "registry_sha256": "610b267c4ba493d65f1528fb008a91bcab513fe39cd039617f4ba0313b50fa61"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "VB11",
-      "affected_subjects": [],
-      "records": [
-        {
-          "marker_token": "VB11",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:A0A075B6N4",
-          "pro_label": "T cell receptor beta variable 25-1 (human)",
-          "uniprot_id": "A0A075B6N4",
-          "uniprot_label": "T cell receptor beta variable 25-1 (human)",
-          "gene_symbol": "TRBV25-1",
-          "hgnc_id": "HGNC:12205",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "medium",
-          "evidence": "https://rest.genenames.org/fetch/symbol/TRBV25-1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A075B6N4",
-          "notes": "Duplicate of TCRVb11 (uppercase) — data quality issue; same mapping as TCRVb11 / TRBV25-1"
-        }
-      ],
-      "pro_ids": [
-        "PR:A0A075B6N4"
-      ],
-      "gene_symbols": [
-        "TRBV25-1"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "VB11",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#VB11",
-        "registry_sha256": "6642023972a293e8a24efa26bb504964bc55c6f68d25a2186fd5609b89465e9f"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "Vb11",
-      "affected_subjects": [],
-      "records": [
-        {
-          "marker_token": "Vb11",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:A0A075B6N4",
-          "pro_label": "T cell receptor beta variable 25-1 (human)",
-          "uniprot_id": "A0A075B6N4",
-          "uniprot_label": "T cell receptor beta variable 25-1 (human)",
-          "gene_symbol": "TRBV25-1",
-          "hgnc_id": "HGNC:12205",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "medium",
-          "evidence": "https://rest.genenames.org/fetch/symbol/TRBV25-1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A075B6N4",
-          "notes": "Duplicate of TCRVb11 — data quality issue; same mapping as TCRVb11 / TRBV25-1"
-        }
-      ],
-      "pro_ids": [
-        "PR:A0A075B6N4"
-      ],
-      "gene_symbols": [
-        "TRBV25-1"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "VB11",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#VB11",
-        "registry_sha256": "6642023972a293e8a24efa26bb504964bc55c6f68d25a2186fd5609b89465e9f"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "Vd1",
-      "affected_subjects": [],
-      "records": [
-        {
-          "marker_token": "Vd1",
-          "marker_synonyms": "",
-          "source_columns": "Required phenotypic markers",
-          "pro_id": "PR:A0A1B0GX56",
-          "pro_label": "T cell receptor delta variable 1 (human)",
-          "uniprot_id": "A0A1B0GX56",
-          "uniprot_label": "T cell receptor delta variable 1 (human)",
-          "gene_symbol": "TRDV1",
-          "hgnc_id": "HGNC:12262",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "medium",
-          "evidence": "https://rest.genenames.org/fetch/symbol/TRDV1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A1B0GX56",
-          "notes": "IMGT nomenclature: TRDV1"
-        }
-      ],
-      "pro_ids": [
-        "PR:A0A1B0GX56"
-      ],
-      "gene_symbols": [
-        "TRDV1"
-      ],
-      "ncbi_gene_ids": [],
-      "identifier_status": "mapped",
-      "status": "mapped",
-      "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.",
-      "resolution_policy": {
-        "marker_token": "VD1",
-        "representation": "single_protein",
-        "protein_resolution": "allow",
-        "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#Vd1",
-        "registry_sha256": "adcc38bd179456a5c30cbddcb322a4cec7c64ca04f5c0f5ca79aef2703ee25fc"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "delta",
-      "affected_subjects": [],
-      "records": [
-        {
-          "marker_token": "delta",
-          "marker_synonyms": "",
-          "source_columns": "Ideal phenotypic markers|Required phenotypic markers",
-          "pro_id": "",
-          "pro_label": "",
-          "uniprot_id": "",
-          "uniprot_label": "",
-          "gene_symbol": "",
-          "hgnc_id": "",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "low",
-          "evidence": "",
-          "notes": "likely parsing artifact from multi-word TCR gene name — data quality issue; see reports/marker_validation.md"
-        }
-      ],
-      "pro_ids": [],
-      "gene_symbols": [],
-      "ncbi_gene_ids": [],
-      "identifier_status": "no_pro_mapping",
-      "status": "source_artifact_needs_review",
-      "status_reason": "Registry notes describe a possible parsing artifact; source clarification is needed.",
-      "resolution_policy": {
-        "marker_token": "DELTA",
-        "representation": "unresolved",
-        "protein_resolution": "withhold",
-        "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#delta",
-        "registry_sha256": "83aed236bb5fcdc28afafd651c50af0e2bc053b7d9f64f979e47e39e66751b5e"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "delta1",
-      "affected_subjects": [
-        "SOULCAP:SC000122",
-        "SOULCAP:SC000123"
-      ],
-      "records": [
-        {
-          "marker_token": "delta1",
-          "marker_synonyms": "",
-          "source_columns": "Ideal phenotypic markers",
-          "pro_id": "",
-          "pro_label": "",
-          "uniprot_id": "",
-          "uniprot_label": "",
-          "gene_symbol": "",
-          "hgnc_id": "",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "low",
-          "evidence": "",
-          "notes": "likely parsing artifact from multi-word TCR gene name — data quality issue; see reports/marker_validation.md"
-        }
-      ],
-      "pro_ids": [],
-      "gene_symbols": [],
-      "ncbi_gene_ids": [],
-      "identifier_status": "no_pro_mapping",
-      "status": "source_artifact_needs_review",
-      "status_reason": "Registry notes describe a possible parsing artifact; source clarification is needed.",
-      "resolution_policy": {
-        "marker_token": "DELTA1",
-        "representation": "unresolved",
-        "protein_resolution": "withhold",
-        "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#delta1",
-        "registry_sha256": "5b366a2c0a5c2f3a19355bb66e4ad0f88c172aa901c577aa9b16acff92294995"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    },
-    {
-      "marker_token": "gamma",
-      "affected_subjects": [],
-      "records": [
-        {
-          "marker_token": "gamma",
-          "marker_synonyms": "",
-          "source_columns": "Ideal phenotypic markers|Required phenotypic markers",
-          "pro_id": "",
-          "pro_label": "",
-          "uniprot_id": "",
-          "uniprot_label": "",
-          "gene_symbol": "",
-          "hgnc_id": "",
-          "ncbi_gene_id": "",
-          "mapping_method": "manual",
-          "confidence": "low",
-          "evidence": "",
-          "notes": "likely parsing artifact from multi-word TCR gene name — data quality issue; see reports/marker_validation.md"
-        }
-      ],
-      "pro_ids": [],
-      "gene_symbols": [],
-      "ncbi_gene_ids": [],
-      "identifier_status": "no_pro_mapping",
-      "status": "source_artifact_needs_review",
-      "status_reason": "Registry notes describe a possible parsing artifact; source clarification is needed.",
-      "resolution_policy": {
-        "marker_token": "GAMMA",
-        "representation": "unresolved",
-        "protein_resolution": "withhold",
-        "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.",
-        "source_ref": "marker_mappings/marker_protein_gene.csv#gamma",
-        "registry_sha256": "dc9b95fd067723b54cfdb2e4fcf8948e571b2dfc83b0fa6dc407a4bcf6f402be"
-      },
-      "classification_basis": "Local registry identifiers and notes; not externally verified."
-    }
-  ],
-  "gaps": [
-    {
-      "soulcap_abbreviation": "NK",
-      "soulcap_full_name": "Natural Killer Cell",
-      "gap_type": "cl_axiom_gap",
-      "description": "CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the field-standard defining positive marker CD56 is absent from its own axioms, though present on its child terms.",
-      "related_cl_ids": "CL:0000623",
-      "evidence": "reports/cl_pro_relationships.md; reports/literature/nk_cell_markers.md; reports/cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623",
-      "status": "open",
-      "repo_issue": "(not yet filed)",
-      "date_logged": "2026-07-22",
-      "association": "exact_abbreviation",
-      "subject_ids": [
-        "SOULCAP:SC000001"
-      ],
-      "candidate_subject_ids": [
-        "SOULCAP:SC000001"
-      ],
-      "evidence_links": [
-        {
-          "label": "reports/cl_pro_relationships.md",
-          "href": "../../cl_pro_relationships.md"
-        },
-        {
-          "label": "reports/literature/nk_cell_markers.md",
-          "href": "../../literature/nk_cell_markers.md"
-        },
-        {
-          "label": "reports/cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623",
-          "href": "../../cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623"
-        }
-      ]
-    },
-    {
-      "soulcap_abbreviation": "NK1 / NK3",
-      "soulcap_full_name": "Natural Killer Cell 1 / Natural Killer Cell 3",
-      "gap_type": "cl_axiom_gap",
-      "description": "CL:0000939 (CD16-positive, CD56-dim NK cell, human) does not distinguish CD57-negative (NK1) from CD57-positive (NK3) substates; both SOULCAP rows currently map to the same CL term at Broad match type.",
-      "related_cl_ids": "CL:0000939",
-      "evidence": "reports/candidate_cl_mappings_narrative.md#ctnk--nk1--nk3--cytotoxic-natural-killer-cell-cd16-positive",
-      "status": "open",
-      "repo_issue": "(not yet filed)",
-      "date_logged": "2026-07-22",
-      "association": "family_or_unresolved",
-      "subject_ids": [],
-      "candidate_subject_ids": [],
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md#ctnk--nk1--nk3--cytotoxic-natural-killer-cell-cd16-positive",
-          "href": "../../candidate_cl_mappings_narrative.md#ctnk--nk1--nk3--cytotoxic-natural-killer-cell-cd16-positive"
-        }
-      ]
-    },
-    {
-      "soulcap_abbreviation": "ILC1",
-      "soulcap_full_name": "Innate Lymphoid Cell 1",
-      "gap_type": "cl_axiom_gap",
-      "description": "No human-specific \"group 1 innate lymphoid cell\" CL term exists, unlike group 2 (CL:0001081) and group 3 (CL:0001078); confirmed by direct OLS4 search returning zero hits for the human-qualified query.",
-      "related_cl_ids": "CL:0001067",
-      "evidence": "reports/cl_term_issues.md#missing-human-specific-group-1-innate-lymphoid-cell-term",
-      "status": "filed_as_issue",
-      "repo_issue": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14",
-      "date_logged": "2026-07-23",
-      "association": "exact_abbreviation",
-      "subject_ids": [
-        "SOULCAP:SC000008"
-      ],
-      "candidate_subject_ids": [
-        "SOULCAP:SC000008"
-      ],
-      "evidence_links": [
-        {
-          "label": "reports/cl_term_issues.md#missing-human-specific-group-1-innate-lymphoid-cell-term",
-          "href": "../../cl_term_issues.md#missing-human-specific-group-1-innate-lymphoid-cell-term"
-        },
-        {
-          "label": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14",
-          "href": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14"
-        }
-      ]
-    },
-    {
-      "soulcap_abbreviation": "Transitional",
-      "soulcap_full_name": "Transitional B cell",
-      "gap_type": "no_reasonable_cl_match",
-      "description": "SOULCAP row has all four marker columns (Required/Ideal exclusion, Required/Ideal phenotypic markers) completely empty in the master sheet — there is no marker definition to match against at all, so no CL candidate can be derived from markers. Distinct from the more specific \"T3\" (Transitional B cell 3) row, which does have marker data.",
-      "related_cl_ids": "(none)",
-      "evidence": "reports/candidate_cl_mappings_batch.tsv (note column); data/marker_combinations.csv",
-      "status": "open",
-      "repo_issue": "(not yet filed)",
-      "date_logged": "2026-07-24",
-      "association": "exact_abbreviation",
-      "subject_ids": [
-        "SOULCAP:SC000027"
-      ],
-      "candidate_subject_ids": [
-        "SOULCAP:SC000027"
-      ],
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_batch.tsv",
-          "href": "../../candidate_cl_mappings_batch.tsv"
-        },
-        {
-          "label": "data/marker_combinations.csv",
-          "href": "../../../data/marker_combinations.csv"
-        }
-      ]
-    },
-    {
-      "soulcap_abbreviation": "CTNK",
-      "soulcap_full_name": "Cytotoxic Natural Killer Cell",
-      "gap_type": "sheet_data_issue",
-      "description": "Sheet's Full Name reads \"Cytotoxice Natural Killer Cell\" (typo, extra trailing \"e\"); this broke batch lexical search entirely for the row (zero OLS4 hits). Marker-based match was unaffected. Cannot be fixed in this repo — requires a correction in the Google Sheet master.",
-      "related_cl_ids": "CL:0000939",
-      "evidence": "reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells",
-      "status": "open",
-      "repo_issue": "(not yet filed)",
-      "date_logged": "2026-07-22",
-      "association": "exact_abbreviation",
-      "subject_ids": [
-        "SOULCAP:SC000003"
-      ],
-      "candidate_subject_ids": [
-        "SOULCAP:SC000003"
-      ],
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells",
-          "href": "../../candidate_cl_mappings_narrative.md#dc-family--dendritic-cells"
-        }
-      ]
-    },
-    {
-      "soulcap_abbreviation": "pDC",
-      "soulcap_full_name": "Peripheral Dendritic Cell (as written)",
-      "gap_type": "sheet_data_issue",
-      "description": "Sheet's Full Name reads \"Peripheral Dendritic Cell,\" but the row's markers (CD123hi, CD303+, low CD33) are the textbook definition of plasmacytoid dendritic cells — likely a wrong word, should probably read \"Plasmacytoid.\" This broke batch lexical search (returned an unrelated \"migratory dendritic cell\" hit). Cannot be fixed in this repo — requires a correction in the Google Sheet master.",
-      "related_cl_ids": "CL:0001058",
-      "evidence": "reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells",
-      "status": "open",
-      "repo_issue": "(not yet filed)",
-      "date_logged": "2026-07-22",
-      "association": "exact_abbreviation",
-      "subject_ids": [
-        "SOULCAP:SC000014"
-      ],
-      "candidate_subject_ids": [
-        "SOULCAP:SC000014"
-      ],
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells",
-          "href": "../../candidate_cl_mappings_narrative.md#dc-family--dendritic-cells"
-        }
-      ]
-    },
-    {
-      "soulcap_abbreviation": "Mono",
-      "soulcap_full_name": "Monocyte",
-      "gap_type": "cl_axiom_gap",
-      "description": "CL:0000576 (plain \"monocyte\") has zero marker axiom rows in cl_pro_relationships.tsv — same parent-class axiom-gap pattern as NK/ILC/cDC/B cell. Match is lexical-only (OAK-verified), not marker-confirmed.",
-      "related_cl_ids": "CL:0000576",
-      "evidence": "reports/candidate_cl_mappings_narrative.md#monocyte-family; reports/cl_pro_relationships.tsv",
-      "status": "open",
-      "repo_issue": "(not yet filed)",
-      "date_logged": "2026-07-24",
-      "association": "exact_abbreviation",
-      "subject_ids": [
-        "SOULCAP:SC000017"
-      ],
-      "candidate_subject_ids": [
-        "SOULCAP:SC000017"
-      ],
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md#monocyte-family",
-          "href": "../../candidate_cl_mappings_narrative.md#monocyte-family"
-        },
-        {
-          "label": "reports/cl_pro_relationships.tsv",
-          "href": "../../cl_pro_relationships.tsv"
-        }
-      ]
-    },
-    {
-      "soulcap_abbreviation": "CMo / NCMo / IntMo",
-      "soulcap_full_name": "Classical / Non-classical / Intermediate Monocyte",
-      "gap_type": "cl_axiom_gap",
-      "description": "CL:0000860/CL:0000875/CL:0002393 assert only CCR2 (CD192) and CX3CR1 status plus lineage negatives — none assert the CD14/CD16 axioms that actually define these three subsets per Ziegler-Heitbrock et al. 2010 (PMID:20628149). Already covered by repo issue #12 (filed upstream as CL#3665) — not a new gap, cited here for context on why these rows can only be matched lexically.",
-      "related_cl_ids": "CL:0000860; CL:0000875; CL:0002393",
-      "evidence": "reports/candidate_cl_mappings_narrative.md#monocyte-family; https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12",
-      "status": "filed_as_issue",
-      "repo_issue": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12",
-      "date_logged": "2026-07-24",
-      "association": "family_or_unresolved",
-      "subject_ids": [],
-      "candidate_subject_ids": [],
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md#monocyte-family",
-          "href": "../../candidate_cl_mappings_narrative.md#monocyte-family"
-        },
-        {
-          "label": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12",
-          "href": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12"
-        },
-        {
-          "label": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12",
-          "href": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12"
-        }
-      ]
-    },
-    {
-      "soulcap_abbreviation": "Mono / CMo / NCMo / IntMo",
-      "soulcap_full_name": "Monocyte family",
-      "gap_type": "sheet_data_issue",
-      "description": "Required exclusion column reads \"CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)\" for all four rows — the second group is missing a \"]\" after CD123hi (likely should read \"([CD123hi]-|CD193-)\", matching the cDC/pDC pattern). Cannot be fixed in this repo — requires a correction in the Google Sheet master.",
-      "related_cl_ids": "(none)",
-      "evidence": "reports/candidate_cl_mappings_narrative.md#monocyte-family; data/marker_combinations.csv",
-      "status": "open",
-      "repo_issue": "(not yet filed)",
-      "date_logged": "2026-07-24",
-      "association": "family_or_unresolved",
-      "subject_ids": [],
-      "candidate_subject_ids": [],
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md#monocyte-family",
-          "href": "../../candidate_cl_mappings_narrative.md#monocyte-family"
-        },
-        {
-          "label": "data/marker_combinations.csv",
-          "href": "../../../data/marker_combinations.csv"
-        }
-      ]
-    },
-    {
-      "soulcap_abbreviation": "B cell",
-      "soulcap_full_name": "B cell",
-      "gap_type": "cl_axiom_gap",
-      "description": "CL:0000236 (plain \"B cell\") has zero marker axiom rows in cl_pro_relationships.tsv — same parent-class axiom-gap pattern as NK/ILC/cDC/monocyte. Match is lexical-only (OAK-verified after OLS4 REST search returned zero hits for this exact query), not marker-confirmed.",
-      "related_cl_ids": "CL:0000236",
-      "evidence": "reports/candidate_cl_mappings_narrative.md#b-cell-parent; reports/cl_pro_relationships.tsv",
-      "status": "open",
-      "repo_issue": "(not yet filed)",
-      "date_logged": "2026-07-24",
-      "association": "exact_abbreviation",
-      "subject_ids": [
-        "SOULCAP:SC000023"
-      ],
-      "candidate_subject_ids": [
-        "SOULCAP:SC000023"
-      ],
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md#b-cell-parent",
-          "href": "../../candidate_cl_mappings_narrative.md#b-cell-parent"
-        },
-        {
-          "label": "reports/cl_pro_relationships.tsv",
-          "href": "../../cl_pro_relationships.tsv"
-        }
-      ]
-    },
-    {
-      "soulcap_abbreviation": "BDN1 / BDN2 / BDN3 / BDN4",
-      "soulcap_full_name": "Double Negative B cell 1-4",
-      "gap_type": "cl_axiom_gap",
-      "description": "SOULCAP defines four \"double negative\" B cell subsets (DN1-4, the atypical/age-associated B cell scheme from the autoimmunity/aging literature) via CD21/CD11c/CD185/IgE combinations. CL has only the general parent CL:0000981 \"double negative memory B cell\" with no DN1-4 subtyping; direct searches for \"DN1 B cell\" through \"DN4 B cell\" and \"atypical memory B cell\" returned zero CL hits. All four SOULCAP rows currently collapse to the same Broad match.",
-      "related_cl_ids": "CL:0000981",
-      "evidence": "reports/candidate_cl_mappings_narrative.md#b-cell-maturation-tree--transitional--mature--naive--double-negative",
-      "status": "open",
-      "repo_issue": "(not yet filed)",
-      "date_logged": "2026-07-24",
-      "association": "family_or_unresolved",
-      "subject_ids": [],
-      "candidate_subject_ids": [],
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md#b-cell-maturation-tree--transitional--mature--naive--double-negative",
-          "href": "../../candidate_cl_mappings_narrative.md#b-cell-maturation-tree--transitional--mature--naive--double-negative"
-        }
-      ]
-    },
-    {
-      "soulcap_abbreviation": "IgD only",
-      "soulcap_full_name": "IgD only Memory B cell",
-      "gap_type": "cl_axiom_gap",
-      "description": "SOULCAP distinguishes IgD+IgM- (\"IgD only\") from IgD+IgM+ (\"Unswitched\") memory B cells as two separate populations. No CL term exists for the IgD+IgM- subset — direct searches for \"IgD-positive memory B cell\" and \"IgD only memory B cell\" returned zero hits; the only IgD-related term found, CL:0001053 \"IgD-negative memory B cell,\" is the opposite polarity. Left unmapped rather than forced onto a wrong-polarity term.",
-      "related_cl_ids": "CL:0001053 (wrong polarity, not used)",
-      "evidence": "reports/candidate_cl_mappings_narrative.md#memory-b-cell-tree",
-      "status": "open",
-      "repo_issue": "(not yet filed)",
-      "date_logged": "2026-07-24",
-      "association": "exact_abbreviation",
-      "subject_ids": [
-        "SOULCAP:SC000038"
-      ],
-      "candidate_subject_ids": [
-        "SOULCAP:SC000038"
-      ],
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md#memory-b-cell-tree",
-          "href": "../../candidate_cl_mappings_narrative.md#memory-b-cell-tree"
-        }
-      ]
-    },
-    {
-      "soulcap_abbreviation": "CD4+ T cell / CD8+ T cell / CD4+/CD8+ T cell / CD4-/CD8- T cell / CD4+/CD8+ TCRab T cell / CD4-/CD8- TCRab T cell / CD4+ TCRgd T cell / CD8+ TCRgd T cell / CD4+/CD8+ TCRgd",
-      "soulcap_full_name": "various",
-      "gap_type": "cl_axiom_gap",
-      "description": "CL organizes CD4/CD8 status primarily under the alpha-beta T cell lineage: no combined alpha-beta+gamma-delta CD4/CD8 terms exist, no clean double-positive alpha-beta term exists, and the only double-negative term found (CL:0002489) is a thymocyte-stage term (wrong tissue for a blood/PBMC panel). All 9 rows Broad-matched to the nearest alpha-beta or gamma-delta parent with this gap noted.",
-      "related_cl_ids": "CL:0000624; CL:0000625; CL:0000789; CL:0000084; CL:0000798",
-      "evidence": "reports/candidate_cl_mappings_narrative.md#combined-lineage-b-and-double-positivedouble-negative-gaps",
-      "status": "open",
-      "repo_issue": "(not yet filed)",
-      "date_logged": "2026-07-24",
-      "association": "family_or_unresolved",
-      "subject_ids": [],
-      "candidate_subject_ids": [],
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md#combined-lineage-b-and-double-positivedouble-negative-gaps",
-          "href": "../../candidate_cl_mappings_narrative.md#combined-lineage-b-and-double-positivedouble-negative-gaps"
-        }
-      ]
-    },
-    {
-      "soulcap_abbreviation": "CD56+ T cell family (13 rows)",
-      "soulcap_full_name": "various CD56+ T cell subsets",
-      "gap_type": "cl_axiom_gap",
-      "description": "SOULCAP crosses CD56 positivity with CD4/CD8/DP/DN status and TCRab/TCRgd lineage (13 variants); CL has only one term at this level (CL:4052055, pending rename to \"CD56-positive T cell, human\" per issue #13) with no further subdivision. All 13 rows Broad-match to CL:4052055.",
-      "related_cl_ids": "CL:4052055",
-      "evidence": "reports/candidate_cl_mappings_narrative.md#cd56-t-cell-family; https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13",
-      "status": "open",
-      "repo_issue": "(not yet filed)",
-      "date_logged": "2026-07-24",
-      "association": "family_or_unresolved",
-      "subject_ids": [],
-      "candidate_subject_ids": [],
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md#cd56-t-cell-family",
-          "href": "../../candidate_cl_mappings_narrative.md#cd56-t-cell-family"
-        },
-        {
-          "label": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13",
-          "href": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13"
-        }
-      ]
-    },
-    {
-      "soulcap_abbreviation": "Tcm / Tem / Temra (general, no CD4/CD8 split) and all TCRgd-specific Tnaive/Tcm/Tem/Temra rows",
-      "soulcap_full_name": "various",
-      "gap_type": "cl_axiom_gap",
-      "description": "CL has no generic central/effector memory T cell term spanning both CD4 and CD8 (only CD4-specific and CD8-specific versions exist), and no gamma-delta-specific differentiation-state terms at all. ~13 rows Broad-matched to the nearest available parent (CL:0000084 T cell, or CL:0000798 gamma-delta T cell) with this gap noted.",
-      "related_cl_ids": "CL:0000084; CL:0000798",
-      "evidence": "reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree",
-      "status": "open",
-      "repo_issue": "(not yet filed)",
-      "date_logged": "2026-07-24",
-      "association": "family_or_unresolved",
-      "subject_ids": [],
-      "candidate_subject_ids": [],
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree",
-          "href": "../../candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree"
-        }
-      ]
-    },
-    {
-      "soulcap_abbreviation": "CD8+ Temra / CD8+ TCRab Temra",
-      "soulcap_full_name": "CD8+ CD45RA+ effector memory T cell",
-      "gap_type": "cl_axiom_gap",
-      "description": "CL:4030002 (effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated) appears to be CD4-specific only; no CD8+ counterpart with the same \"terminally differentiated\" qualifier was found — only the non-TEMRA-specific CL:0000913 (effector memory CD8-positive, alpha-beta T cell). Possible asymmetry in CL's own hierarchy; needs a second look before concluding it's a genuine omission rather than differently-named.",
-      "related_cl_ids": "CL:4030002; CL:0000913",
-      "evidence": "reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree",
-      "status": "open",
-      "repo_issue": "(not yet filed)",
-      "date_logged": "2026-07-24",
-      "association": "family_or_unresolved",
-      "subject_ids": [],
-      "candidate_subject_ids": [],
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree",
-          "href": "../../candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree"
-        }
-      ]
-    },
-    {
-      "soulcap_abbreviation": "(26 rows, various abbreviations)",
-      "soulcap_full_name": "(no Full Name in sheet)",
-      "gap_type": "sheet_data_issue",
-      "description": "26 rows in the T cell branch have a completely empty Full Name field, so no name-based match can be attempted (Conv TCRab family, T helper, T cytotoxic, Tfh, CD4 PanT helper/Treg, ConT Treg-like/Tfh-like, Th1/2/9/17-like, Vg9/Vd1/Vd2/Vd3 subsets). Additionally, Th1-like/Th2-like/Th9-like/Th17-like each appear TWICE in the sheet: one copy (parented under \"CD4 ConT\") has iNKT-style TCRVa24-Ja18/CD1d-a-GalCer markers that look copy-pasted from an unrelated row; the other (no parent) has the correct Th-subset chemokine receptor panel (CD183/CD185/CD194/CD196). Likely a genuine sheet data bug, not two intentional variants. Cannot be fixed here — requires correction in the Google Sheet master.",
-      "related_cl_ids": "CL:0000912 (T helper, once named); CL:0000910 (T cytotoxic, once named)",
-      "evidence": "reports/candidate_cl_mappings_narrative.md#rows-with-no-full-name-in-the-sheet--not-mapped",
-      "status": "open",
-      "repo_issue": "(not yet filed)",
-      "date_logged": "2026-07-24",
-      "association": "family_or_unresolved",
-      "subject_ids": [],
-      "candidate_subject_ids": [],
-      "evidence_links": [
-        {
-          "label": "reports/candidate_cl_mappings_narrative.md#rows-with-no-full-name-in-the-sheet--not-mapped",
-          "href": "../../candidate_cl_mappings_narrative.md#rows-with-no-full-name-in-the-sheet--not-mapped"
-        }
-      ]
-    }
-  ],
-  "findings": [
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000017",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000018",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000019",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000020",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000059",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000074",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000075",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000076",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000077",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000078",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000079",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000107",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000109",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000110",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000111",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000112",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000113",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000114",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000123",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000124",
-      "message": "2 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000125",
-      "message": "1 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000126",
-      "message": "2 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "error",
-      "code": "invalid_profile",
-      "subject": "SOULCAP:SC000127",
-      "message": "2 marker cell(s) cannot be scored."
-    },
-    {
-      "severity": "warning",
-      "code": "uncertain_proposal",
-      "subject": "SOULCAP:SC000006",
-      "message": "Proposal for CL:0001074 is explicitly uncertain."
-    },
-    {
-      "severity": "warning",
-      "code": "uncertain_proposal",
-      "subject": "SOULCAP:SC000064",
-      "message": "Proposal for CL:0000789 is explicitly uncertain."
-    },
-    {
-      "severity": "warning",
-      "code": "uncertain_proposal",
-      "subject": "SOULCAP:SC000065",
-      "message": "Proposal for CL:0000084 is explicitly uncertain."
-    },
-    {
-      "severity": "warning",
-      "code": "uncertain_proposal",
-      "subject": "SOULCAP:SC000068",
-      "message": "Proposal for CL:0000789 is explicitly uncertain."
-    },
-    {
-      "severity": "warning",
-      "code": "uncertain_proposal",
-      "subject": "SOULCAP:SC000069",
-      "message": "Proposal for CL:0000789 is explicitly uncertain."
-    },
-    {
-      "severity": "warning",
-      "code": "uncertain_proposal",
-      "subject": "SOULCAP:SC000070",
-      "message": "Proposal for CL:0000798 is explicitly uncertain."
-    },
-    {
-      "severity": "warning",
-      "code": "uncertain_proposal",
-      "subject": "SOULCAP:SC000071",
-      "message": "Proposal for CL:0000798 is explicitly uncertain."
-    },
-    {
-      "severity": "warning",
-      "code": "uncertain_proposal",
-      "subject": "SOULCAP:SC000072",
-      "message": "Proposal for CL:0000798 is explicitly uncertain."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000001",
-      "message": "CL:0000623: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000002",
-      "message": "CL:0000938: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000003",
-      "message": "CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000004",
-      "message": "CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000005",
-      "message": "CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000006",
-      "message": "CL:0001074: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000007",
-      "message": "CL:0001065: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000008",
-      "message": "CL:0001067: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000009",
-      "message": "CL:0001081: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000010",
-      "message": "CL:0001078: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000011",
-      "message": "CL:0000990: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000012",
-      "message": "CL:0002394: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000013",
-      "message": "CL:0002399: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000014",
-      "message": "CL:0001058: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000015",
-      "message": "CL:0000043: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000016",
-      "message": "CL:0000043: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000017",
-      "message": "CL:0000576: structured fields empty: literature_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000018",
-      "message": "CL:0000860: structured fields empty: literature_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000019",
-      "message": "CL:0000875: structured fields empty: literature_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000020",
-      "message": "CL:0002393: structured fields empty: literature_evidence. Legacy narrative may contain evidence."
-    },
-    {
-      "severity": "info",
-      "code": "evidence_not_recorded",
-      "subject": "SOULCAP:SC000021",
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-      "citation": "Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892)",
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-      "cl_id": "CL:0000624",
-      "cl_label": "CD4-positive, alpha-beta T cell",
-      "pr_id": "PR:000025402",
-      "pr_label": "T cell receptor co-receptor CD8",
-      "cd_synonym": "CD8 (label)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)",
-      "quote": "CD3+/CD8−/CD4+/CCR7+/CD45RA+",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000624",
-      "cl_label": "CD4-positive, alpha-beta T cell",
-      "pr_id": "PR:000001004",
-      "pr_label": "CD4 molecule",
-      "cd_synonym": "CD4 (label)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)",
-      "quote": "CD3+/CD8−/CD4+/CCR7+/CD45RA+",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000625",
-      "cl_label": "CD8-positive, alpha-beta T cell",
-      "pr_id": "PR:000001004",
-      "pr_label": "CD4 molecule",
-      "cd_synonym": "CD4 (label)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)",
-      "quote": "CD3+/CD8+/CD4−/CCR7+/CD45RA+",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000625",
-      "cl_label": "CD8-positive, alpha-beta T cell",
-      "pr_id": "PR:000025402",
-      "pr_label": "T cell receptor co-receptor CD8",
-      "cd_synonym": "CD8 (label)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)",
-      "quote": "CD3+/CD8+/CD4−/CCR7+/CD45RA+",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000771",
-      "cl_label": "eosinophil",
-      "pr_id": "PR:000001254",
-      "pr_label": "C-C chemokine receptor type 1",
-      "cd_synonym": "CD191 (exact)",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "CD191/CCR1 not among the markers studied in PMID:38666394 (CCR3/CD193 is, but not CCR1); no other eosinophil-specific CD191 evidence found via targeted EuropePMC search.",
-      "evidence_links": []
-    },
-    {
-      "cl_id": "CL:0000771",
-      "cl_label": "eosinophil",
-      "pr_id": "PR:000001255",
-      "pr_label": "C-C chemokine receptor type 3",
-      "cd_synonym": "CD193 (exact)",
-      "species_support": "human",
-      "evidence_source": "europepmc_search",
-      "citation": "(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow",
-      "quote": "candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5Rα), HLA-DR, using 10 parameter flow cytometry",
-      "source_ref": "https://europepmc.org/article/MED/38666394",
-      "evidence_links": [
-        {
-          "label": "https://europepmc.org/article/MED/38666394",
-          "href": "https://europepmc.org/article/MED/38666394"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000771",
-      "cl_label": "eosinophil",
-      "pr_id": "PR:000001307",
-      "pr_label": "CD44 molecule",
-      "cd_synonym": "CD44 (label); CDw44 (exact)",
-      "species_support": "human",
-      "evidence_source": "europepmc_search",
-      "citation": "(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow",
-      "quote": "candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5Rα), HLA-DR, using 10 parameter flow cytometry",
-      "source_ref": "https://europepmc.org/article/MED/38666394",
-      "evidence_links": [
-        {
-          "label": "https://europepmc.org/article/MED/38666394",
-          "href": "https://europepmc.org/article/MED/38666394"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000771",
-      "cl_label": "eosinophil",
-      "pr_id": "PR:000001343",
-      "pr_label": "CD69 molecule",
-      "cd_synonym": "CD69 (label)",
-      "species_support": "human",
-      "evidence_source": "europepmc_search",
-      "citation": "(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow",
-      "quote": "candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5Rα), HLA-DR, using 10 parameter flow cytometry",
-      "source_ref": "https://europepmc.org/article/MED/38666394",
-      "evidence_links": [
-        {
-          "label": "https://europepmc.org/article/MED/38666394",
-          "href": "https://europepmc.org/article/MED/38666394"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000771",
-      "cl_label": "eosinophil",
-      "pr_id": "PR:000005178",
-      "pr_label": "CD9 molecule",
-      "cd_synonym": "CD9 (label)",
-      "species_support": "human",
-      "evidence_source": "europepmc_search",
-      "citation": "(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow",
-      "quote": "candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5Rα), HLA-DR, using 10 parameter flow cytometry",
-      "source_ref": "https://europepmc.org/article/MED/38666394",
-      "evidence_links": [
-        {
-          "label": "https://europepmc.org/article/MED/38666394",
-          "href": "https://europepmc.org/article/MED/38666394"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000775",
-      "cl_label": "neutrophil",
-      "pr_id": "PR:000001479",
-      "pr_label": "low affinity immunoglobulin gamma Fc region receptor II",
-      "cd_synonym": "CD32 (broad)",
-      "species_support": "human",
-      "evidence_source": "europepmc_search",
-      "citation": "Su K et al. 2007 (PMID:17312177; DOI:10.4049/jimmunol.178.5.3272) -- FcγRIIb (CD32B) expression profiling in human circulating leukocytes",
-      "quote": "we found that FcgammaRIIb is expressed on the cell surface of circulating B lymphocytes, monocytes, neutrophils, myeloid dendritic cells (DCs), and at very low levels on plasmacytoid DCs from some donors",
-      "source_ref": "https://europepmc.org/article/MED/17312177",
-      "evidence_links": [
-        {
-          "label": "https://europepmc.org/article/MED/17312177",
-          "href": "https://europepmc.org/article/MED/17312177"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000775",
-      "cl_label": "neutrophil",
-      "pr_id": "PR:000001879",
-      "pr_label": "leukosialin",
-      "cd_synonym": "CD43 (related)",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "CD43 not found in any targeted EuropePMC search in a human-neutrophil-specific context ('CD43 leukosialin human neutrophil' returned unrelated papers).",
-      "evidence_links": []
-    },
-    {
-      "cl_id": "CL:0000786",
-      "cl_label": "plasma cell",
-      "pr_id": "PR:000001289",
-      "pr_label": "membrane-spanning 4-domains subfamily A member 1",
-      "cd_synonym": "CD20 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)",
-      "quote": "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired",
-      "source_ref": "reports/literature/b_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000786",
-      "cl_label": "plasma cell",
-      "pr_id": "PR:000001935",
-      "pr_label": "syndecan-1",
-      "cd_synonym": "CD138 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)",
-      "quote": "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired",
-      "source_ref": "reports/literature/b_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000787",
-      "cl_label": "memory B cell",
-      "pr_id": "PR:000001935",
-      "pr_label": "syndecan-1",
-      "cd_synonym": "CD138 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122) -- describes the plasmablast/plasma-cell transition boundary, not memory B cells directly, but confirms CD138 as a human B-lineage differentiation marker",
-      "quote": "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired",
-      "source_ref": "reports/literature/b_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000787",
-      "cl_label": "memory B cell",
-      "pr_id": "PR:000001289",
-      "pr_label": "membrane-spanning 4-domains subfamily A member 1",
-      "cd_synonym": "CD20 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)",
-      "quote": "Mature B cells typically express both CD19 and CD20.",
-      "source_ref": "reports/literature/b_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000788",
-      "cl_label": "naive B cell",
-      "pr_id": "PR:000001963",
-      "pr_label": "CD27 molecule",
-      "cd_synonym": "CD27 (label); CD27L (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)",
-      "quote": "\"**N**: CD19+ CD27− CD38− CD24− IgD+\" [naive B cell gating entry, Table 1]",
-      "source_ref": "reports/literature/b_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000788",
-      "cl_label": "naive B cell",
-      "pr_id": "PR:000001289",
-      "pr_label": "membrane-spanning 4-domains subfamily A member 1",
-      "cd_synonym": "CD20 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)",
-      "quote": "Mature B cells typically express both CD19 and CD20.",
-      "source_ref": "reports/literature/b_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000803",
-      "cl_label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell",
-      "pr_id": "PR:000001004",
-      "pr_label": "CD4 molecule",
-      "cd_synonym": "CD4 (label)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Kelm M et al. 2026 (PMID: 41727470; DOI: 10.3389/fimmu.2026.1739493; PMC: PMC12920462)",
-      "quote": "Purity of PHA- and Zole- expanded αβ and γδ T-cell cultures and MACS-isolated T-cell populations were assessed by flow cytometry using anti-CD3, CD4, CD8, γδ TCR, and αβ TCR monoclonal antibodies.",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000803",
-      "cl_label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell",
-      "pr_id": "PR:000001084",
-      "pr_label": "T-cell surface glycoprotein CD8 alpha chain",
-      "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Kelm M et al. 2026 (PMID: 41727470; DOI: 10.3389/fimmu.2026.1739493; PMC: PMC12920462)",
-      "quote": "Purity of PHA- and Zole- expanded αβ and γδ T-cell cultures and MACS-isolated T-cell populations were assessed by flow cytometry using anti-CD3, CD4, CD8, γδ TCR, and αβ TCR monoclonal antibodies.",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000814",
-      "cl_label": "mature NK T cell",
-      "pr_id": "PR:000001874",
-      "pr_label": "KLRB1-like protein",
-      "cd_synonym": "",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Lal KG et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357)",
-      "quote": "we defined iNKT cell subsets by the co-expression of TCR Vα24 and Vβ11 among CD3+ cells, and further through their expression of CD4 and CD161",
-      "source_ref": "reports/literature/inkt_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/inkt_markers.md",
-          "href": "../../literature/inkt_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000818",
-      "cl_label": "transitional stage B cell",
-      "pr_id": "PR:000001408",
-      "pr_label": "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1",
-      "cd_synonym": "CD38 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)",
-      "quote": "T1 (CD38+++CD24hiCD10++IgDlo/−), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)",
-      "source_ref": "reports/literature/b_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000818",
-      "cl_label": "transitional stage B cell",
-      "pr_id": "PR:000001932",
-      "pr_label": "signal transducer CD24",
-      "cd_synonym": "CD24 (label); CD24A (related)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)",
-      "quote": "T1 (CD38+++CD24hiCD10++IgDlo/−), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)",
-      "source_ref": "reports/literature/b_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000818",
-      "cl_label": "transitional stage B cell",
-      "pr_id": "PR:000001289",
-      "pr_label": "membrane-spanning 4-domains subfamily A member 1",
-      "cd_synonym": "CD20 (exact)",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "CD20 positivity on transitional B cells is not stated verbatim in reports/literature/b_cell_markers.md -- the report only confirms CD20 on 'mature B cells' generally (Griffin & Rothstein 2012), not the transitional stage specifically.",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000860",
-      "cl_label": "classical monocyte",
-      "pr_id": "PR:000001199",
-      "pr_label": "C-C chemokine receptor type 2",
-      "cd_synonym": "CD192 (exact)",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.",
-      "evidence_links": []
-    },
-    {
-      "cl_id": "CL:0000860",
-      "cl_label": "classical monocyte",
-      "pr_id": "PR:000001002",
-      "pr_label": "CD19 molecule",
-      "cd_synonym": "CD19 (label)",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.",
-      "evidence_links": []
-    },
-    {
-      "cl_id": "CL:0000860",
-      "cl_label": "classical monocyte",
-      "pr_id": "PR:000001020",
-      "pr_label": "CD3 epsilon",
-      "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.",
-      "evidence_links": []
-    },
-    {
-      "cl_id": "CL:0000860",
-      "cl_label": "classical monocyte",
-      "pr_id": "PR:000001289",
-      "pr_label": "membrane-spanning 4-domains subfamily A member 1",
-      "cd_synonym": "CD20 (exact)",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.",
-      "evidence_links": []
-    },
-    {
-      "cl_id": "CL:0000875",
-      "cl_label": "non-classical monocyte",
-      "pr_id": "PR:000001206",
-      "pr_label": "CX3C chemokine receptor 1",
-      "cd_synonym": "",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.",
-      "evidence_links": []
-    },
-    {
-      "cl_id": "CL:0000875",
-      "cl_label": "non-classical monocyte",
-      "pr_id": "PR:000001002",
-      "pr_label": "CD19 molecule",
-      "cd_synonym": "CD19 (label)",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.",
-      "evidence_links": []
-    },
-    {
-      "cl_id": "CL:0000875",
-      "cl_label": "non-classical monocyte",
-      "pr_id": "PR:000001020",
-      "pr_label": "CD3 epsilon",
-      "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.",
-      "evidence_links": []
-    },
-    {
-      "cl_id": "CL:0000875",
-      "cl_label": "non-classical monocyte",
-      "pr_id": "PR:000001289",
-      "pr_label": "membrane-spanning 4-domains subfamily A member 1",
-      "cd_synonym": "CD20 (exact)",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.",
-      "evidence_links": []
-    },
-    {
-      "cl_id": "CL:0000895",
-      "cl_label": "naive thymus-derived CD4-positive, alpha-beta T cell",
-      "pr_id": "PR:000001380",
-      "pr_label": "interleukin-2 receptor subunit alpha",
-      "cd_synonym": "CD25 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg",
-      "quote": "In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000898",
-      "cl_label": "naive T cell",
-      "pr_id": "PR:000001318",
-      "pr_label": "L-selectin",
-      "cd_synonym": "CD62 (exact); CD62L (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Kamigaichi A et al. 2026 (PMID: 42047825; DOI: 10.1007/s00262-026-04357-4; PMC: PMC13125411) -- confirms CD62L used on human CD4+ T cells, though in a Th1 (not naive-T) context",
-      "quote": "Th1 (CXCR3+CCR4−CCR6− CD62LlowCD4+ T cells)",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000898",
-      "cl_label": "naive T cell",
-      "pr_id": "PR:000001307",
-      "pr_label": "CD44 molecule",
-      "cd_synonym": "CD44 (label); CDw44 (exact)",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "CD44 not mentioned anywhere in reports/literature/t_cell_markers.md; not found via a targeted EuropePMC search either ('CD44 human naive T cell surface marker' returned unrelated tissue-resident-memory/B-cell papers).",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000898",
-      "cl_label": "naive T cell",
-      "pr_id": "PR:000001015",
-      "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA",
-      "cd_synonym": "CD45RA (label)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)",
-      "quote": "CD3+/CD8−/CD4+/CCR7+/CD45RA+",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000898",
-      "cl_label": "naive T cell",
-      "pr_id": "PR:000001203",
-      "pr_label": "C-C chemokine receptor type 7",
-      "cd_synonym": "CD197 (exact); CDw197 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)",
-      "quote": "CD3+/CD8−/CD4+/CCR7+/CD45RA+",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000898",
-      "cl_label": "naive T cell",
-      "pr_id": "PR:000001869",
-      "pr_label": "interleukin-7 receptor subunit alpha",
-      "cd_synonym": "CD127 (exact); CDw127 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg",
-      "quote": "In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000900",
-      "cl_label": "naive thymus-derived CD8-positive, alpha-beta T cell",
-      "pr_id": "PR:000001380",
-      "pr_label": "interleukin-2 receptor subunit alpha",
-      "cd_synonym": "CD25 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg",
-      "quote": "In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000904",
-      "cl_label": "central memory CD4-positive, alpha-beta T cell",
-      "pr_id": "PR:000001015",
-      "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA",
-      "cd_synonym": "CD45RA (label)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)",
-      "quote": "CD3+/CD8−/CD4+/CCR7+/CD45RA−",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000904",
-      "cl_label": "central memory CD4-positive, alpha-beta T cell",
-      "pr_id": "PR:000001203",
-      "pr_label": "C-C chemokine receptor type 7",
-      "cd_synonym": "CD197 (exact); CDw197 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)",
-      "quote": "CD3+/CD8−/CD4+/CCR7+/CD45RA−",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000905",
-      "cl_label": "effector memory CD4-positive, alpha-beta T cell",
-      "pr_id": "PR:000001015",
-      "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA",
-      "cd_synonym": "CD45RA (label)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)",
-      "quote": "CD3+/CD8−/CD4+/CCR7−/CD45RA+",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000905",
-      "cl_label": "effector memory CD4-positive, alpha-beta T cell",
-      "pr_id": "PR:000001203",
-      "pr_label": "C-C chemokine receptor type 7",
-      "cd_synonym": "CD197 (exact); CDw197 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)",
-      "quote": "CD3+/CD8−/CD4+/CCR7−/CD45RA+",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000907",
-      "cl_label": "central memory CD8-positive, alpha-beta T cell",
-      "pr_id": "PR:000001015",
-      "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA",
-      "cd_synonym": "CD45RA (label)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Central Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design",
-      "quote": "CD3+/CD8+/CD4−/CCR7+/CD45RA+",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000907",
-      "cl_label": "central memory CD8-positive, alpha-beta T cell",
-      "pr_id": "PR:000001203",
-      "pr_label": "C-C chemokine receptor type 7",
-      "cd_synonym": "CD197 (exact); CDw197 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Central Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design",
-      "quote": "CD3+/CD8+/CD4−/CCR7+/CD45RA+",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000913",
-      "cl_label": "effector memory CD8-positive, alpha-beta T cell",
-      "pr_id": "PR:000001015",
-      "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA",
-      "cd_synonym": "CD45RA (label)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Effector Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design",
-      "quote": "CD3+/CD8+/CD4−/CCR7+/CD45RA+",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000913",
-      "cl_label": "effector memory CD8-positive, alpha-beta T cell",
-      "pr_id": "PR:000001203",
-      "pr_label": "C-C chemokine receptor type 7",
-      "cd_synonym": "CD197 (exact); CDw197 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Effector Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design",
-      "quote": "CD3+/CD8+/CD4−/CCR7+/CD45RA+",
-      "source_ref": "reports/literature/t_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/t_cell_markers.md",
-          "href": "../../literature/t_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000938",
-      "cl_label": "CD16-negative, CD56-bright natural killer cell, human",
-      "pr_id": "PR:000001024",
-      "pr_label": "neural cell adhesion molecule 1",
-      "cd_synonym": "CD56 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0)",
-      "quote": "human NK cells are typically divided into two main categories on the basis of the density of CD56, the 140-kDa isoform of the neural cell adhesion molecule (NCAM)2, on the cell surface: CD56bright and CD56dim NK cells.",
-      "source_ref": "reports/literature/nk_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/nk_cell_markers.md",
-          "href": "../../literature/nk_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000938",
-      "cl_label": "CD16-negative, CD56-bright natural killer cell, human",
-      "pr_id": "PR:000001483",
-      "pr_label": "low affinity immunoglobulin gamma Fc region receptor III",
-      "cd_synonym": "CD16 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360)",
-      "quote": "CD56bright human NK cells express high levels of CD62L (l-selectin) and CD94 but absent or low levels of CD16 and KIRs",
-      "source_ref": "reports/literature/nk_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/nk_cell_markers.md",
-          "href": "../../literature/nk_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000938",
-      "cl_label": "CD16-negative, CD56-bright natural killer cell, human",
-      "pr_id": "PR:000002015",
-      "pr_label": "MHC class II histocompatibility antigen alpha chain DRA",
-      "cd_synonym": "",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0) -- indirect: HLA-D family expression shown on an adaptive NK subset (NK3B), not stated specifically for CD56bright/CD56dim",
-      "quote": "Notably, NK3B (cluster 1) was distinguished by expression of members of the HLA-D gene family, CD74, CCL5, CD7 and KLRC1, and NK3A exhibited enhanced cytotoxic capabilities (through expression of GZMA, GZMB and PRF1)",
-      "source_ref": "reports/literature/nk_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/nk_cell_markers.md",
-          "href": "../../literature/nk_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000938",
-      "cl_label": "CD16-negative, CD56-bright natural killer cell, human",
-      "pr_id": "PR:000001319",
-      "pr_label": "SLAM family member 5",
-      "cd_synonym": "CD84 (exact)",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "No CD84-on-NK-cell evidence found in reports/literature/nk_cell_markers.md or a targeted EuropePMC search ('CD84 human natural killer cell surface marker' -- top hits were CD84 in MDSCs/breast cancer/CLL, none NK-specific).",
-      "evidence_links": [
-        {
-          "label": "reports/literature/nk_cell_markers.md",
-          "href": "../../literature/nk_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000939",
-      "cl_label": "CD16-positive, CD56-dim natural killer cell, human",
-      "pr_id": "PR:000001024",
-      "pr_label": "neural cell adhesion molecule 1",
-      "cd_synonym": "CD56 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0)",
-      "quote": "human NK cells are typically divided into two main categories on the basis of the density of CD56, the 140-kDa isoform of the neural cell adhesion molecule (NCAM)2, on the cell surface: CD56bright and CD56dim NK cells.",
-      "source_ref": "reports/literature/nk_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/nk_cell_markers.md",
-          "href": "../../literature/nk_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000939",
-      "cl_label": "CD16-positive, CD56-dim natural killer cell, human",
-      "pr_id": "PR:000002015",
-      "pr_label": "MHC class II histocompatibility antigen alpha chain DRA",
-      "cd_synonym": "",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0) -- indirect: HLA-D family expression shown on an adaptive NK subset (NK3B), not stated specifically for CD56bright/CD56dim",
-      "quote": "Notably, NK3B (cluster 1) was distinguished by expression of members of the HLA-D gene family, CD74, CCL5, CD7 and KLRC1, and NK3A exhibited enhanced cytotoxic capabilities (through expression of GZMA, GZMB and PRF1)",
-      "source_ref": "reports/literature/nk_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/nk_cell_markers.md",
-          "href": "../../literature/nk_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000939",
-      "cl_label": "CD16-positive, CD56-dim natural killer cell, human",
-      "pr_id": "PR:000001483",
-      "pr_label": "low affinity immunoglobulin gamma Fc region receptor III",
-      "cd_synonym": "CD16 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360)",
-      "quote": "In contrast, CD56dim NK cells are CD16hi and express more KIRs but less CD94 and CD62L; they predominate in PB",
-      "source_ref": "reports/literature/nk_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/nk_cell_markers.md",
-          "href": "../../literature/nk_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000960",
-      "cl_label": "T3 B cell",
-      "pr_id": "PR:000001318",
-      "pr_label": "L-selectin",
-      "cd_synonym": "CD62 (exact); CD62L (exact)",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "CD62L not mentioned in the T3-transitional context in reports/literature/b_cell_markers.md (only mentioned for DN2 B cells: 'lack of CXCR5 and CD62L expression', Sachinidis 2021, a different B cell subset).",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000960",
-      "cl_label": "T3 B cell",
-      "pr_id": "PR:000001338",
-      "pr_label": "complement receptor type 2",
-      "cd_synonym": "CD21 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)",
-      "quote": "The gradual loss of CD10, CD5, and IgM and the upregulation of CD22, CD44, CD21, and CD23 as cells progress from immature to transitional (TI to T2 to T3) to mature naïve cells",
-      "source_ref": "reports/literature/b_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000960",
-      "cl_label": "T3 B cell",
-      "pr_id": "PR:000001880",
-      "pr_label": "low affinity immunoglobulin epsilon Fc receptor",
-      "cd_synonym": "CD23 (exact); CD23A (related)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)",
-      "quote": "The gradual loss of CD10, CD5, and IgM and the upregulation of CD22, CD44, CD21, and CD23 as cells progress from immature to transitional (TI to T2 to T3) to mature naïve cells",
-      "source_ref": "reports/literature/b_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000970",
-      "cl_label": "unswitched memory B cell",
-      "pr_id": "PR:000001963",
-      "pr_label": "CD27 molecule",
-      "cd_synonym": "CD27 (label); CD27L (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)",
-      "quote": "\"**M**: CD19+ CD27+ CD38−/lo\" [memory B cell gating entry]",
-      "source_ref": "reports/literature/b_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000972",
-      "cl_label": "class switched memory B cell",
-      "pr_id": "PR:000001963",
-      "pr_label": "CD27 molecule",
-      "cd_synonym": "CD27 (label); CD27L (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)",
-      "quote": "\"**M**: CD19+ CD27+ CD38−/lo\" [memory B cell gating entry]",
-      "source_ref": "reports/literature/b_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000980",
-      "cl_label": "plasmablast",
-      "pr_id": "PR:000001408",
-      "pr_label": "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1",
-      "cd_synonym": "CD38 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)",
-      "quote": "\"**ASC**: CD19+ CD27+ CD38hi\" and \"**M**: CD19+ CD27+ CD38−/lo\" and",
-      "source_ref": "reports/literature/b_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000980",
-      "cl_label": "plasmablast",
-      "pr_id": "PR:000001963",
-      "pr_label": "CD27 molecule",
-      "cd_synonym": "CD27 (label); CD27L (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)",
-      "quote": "\"**ASC**: CD19+ CD27+ CD38hi\" and \"**M**: CD19+ CD27+ CD38−/lo\" and",
-      "source_ref": "reports/literature/b_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000980",
-      "cl_label": "plasmablast",
-      "pr_id": "PR:000001289",
-      "pr_label": "membrane-spanning 4-domains subfamily A member 1",
-      "cd_synonym": "CD20 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)",
-      "quote": "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired",
-      "source_ref": "reports/literature/b_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000980",
-      "cl_label": "plasmablast",
-      "pr_id": "PR:000001935",
-      "pr_label": "syndecan-1",
-      "cd_synonym": "CD138 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)",
-      "quote": "\"**CD138neg ASC**: CD138−\" and \"**CD138pos ASC**: CD138+\" [gating labels distinguishing",
-      "source_ref": "reports/literature/b_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000981",
-      "cl_label": "double negative memory B cell",
-      "pr_id": "PR:000001963",
-      "pr_label": "CD27 molecule",
-      "cd_synonym": "CD27 (label); CD27L (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Sachinidis A & Garyfallos A 2021 (PMID: 34964023; DOI: 10.31138/mjr.32.3.192)",
-      "quote": "Double negative (DN) B cells, also known as atypical memory B cells, constitute a B cell population that lacks expression of immunoglobulin D and CD27 memory marker.",
-      "source_ref": "reports/literature/b_cell_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/b_cell_markers.md",
-          "href": "../../literature/b_cell_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0000990",
-      "cl_label": "conventional dendritic cell",
-      "pr_id": "PR:000001013",
-      "pr_label": "integrin alpha-X",
-      "cd_synonym": "CD11 (exact); CD11C (related); CD11c (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)",
-      "quote": "Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123−",
-      "source_ref": "reports/literature/dc_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/dc_markers.md",
-          "href": "../../literature/dc_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0001058",
-      "cl_label": "plasmacytoid dendritic cell, human",
-      "pr_id": "PR:000001013",
-      "pr_label": "integrin alpha-X",
-      "cd_synonym": "CD11 (exact); CD11C (related); CD11c (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)",
-      "quote": "Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123−",
-      "source_ref": "reports/literature/dc_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/dc_markers.md",
-          "href": "../../literature/dc_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0001058",
-      "cl_label": "plasmacytoid dendritic cell, human",
-      "pr_id": "PR:000001889",
-      "pr_label": "CD14 molecule",
-      "cd_synonym": "CD14 (label)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)",
-      "quote": "DCs were defined as live, LIN(CD3, CD19, CD56)−CD14−HLA-DR+ cells.",
-      "source_ref": "reports/literature/dc_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/dc_markers.md",
-          "href": "../../literature/dc_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0001058",
-      "cl_label": "plasmacytoid dendritic cell, human",
-      "pr_id": "PR:000001865",
-      "pr_label": "interleukin-3 receptor class 2 alpha chain",
-      "cd_synonym": "CD123 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)",
-      "quote": "pDCs are CD11c− CD123+ cells best characterized for their type I interferon",
-      "source_ref": "reports/literature/dc_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/dc_markers.md",
-          "href": "../../literature/dc_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0001065",
-      "cl_label": "innate lymphoid cell",
-      "pr_id": "PR:000001002",
-      "pr_label": "CD19 molecule",
-      "cd_synonym": "CD19 (label)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Krabbendam L et al. 2021 (PMID:33300130; DOI:10.1002/eji.202048696)",
-      "quote": "Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) FcRεR1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors).",
-      "source_ref": "reports/literature/ilc_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/ilc_markers.md",
-          "href": "../../literature/ilc_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0001065",
-      "cl_label": "innate lymphoid cell",
-      "pr_id": "PR:000001020",
-      "pr_label": "CD3 epsilon",
-      "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Krabbendam L et al. 2021 (PMID:33300130; DOI:10.1002/eji.202048696)",
-      "quote": "We gated for lymphocytes, excluded doublets and dead cells and selected CD45+CD3− cells",
-      "source_ref": "reports/literature/ilc_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/ilc_markers.md",
-          "href": "../../literature/ilc_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0002393",
-      "cl_label": "intermediate monocyte",
-      "pr_id": "PR:000001002",
-      "pr_label": "CD19 molecule",
-      "cd_synonym": "CD19 (label)",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.",
-      "evidence_links": []
-    },
-    {
-      "cl_id": "CL:0002393",
-      "cl_label": "intermediate monocyte",
-      "pr_id": "PR:000001020",
-      "pr_label": "CD3 epsilon",
-      "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.",
-      "evidence_links": []
-    },
-    {
-      "cl_id": "CL:0002393",
-      "cl_label": "intermediate monocyte",
-      "pr_id": "PR:000001199",
-      "pr_label": "C-C chemokine receptor type 2",
-      "cd_synonym": "CD192 (exact)",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.",
-      "evidence_links": []
-    },
-    {
-      "cl_id": "CL:0002393",
-      "cl_label": "intermediate monocyte",
-      "pr_id": "PR:000001289",
-      "pr_label": "membrane-spanning 4-domains subfamily A member 1",
-      "cd_synonym": "CD20 (exact)",
-      "species_support": "insufficient_evidence",
-      "evidence_source": "none",
-      "citation": "",
-      "quote": "",
-      "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.",
-      "evidence_links": []
-    },
-    {
-      "cl_id": "CL:0002394",
-      "cl_label": "CD141-positive myeloid dendritic cell",
-      "pr_id": "PR:000002105",
-      "pr_label": "thrombomodulin",
-      "cd_synonym": "CD141 (exact)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)",
-      "quote": "DC1 corresponds to the cross-presenting CD141/BDCA-3+ cDC1, which is best marked by CLEC9A",
-      "source_ref": "reports/literature/dc_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/dc_markers.md",
-          "href": "../../literature/dc_markers.md"
-        }
-      ]
-    },
-    {
-      "cl_id": "CL:0002399",
-      "cl_label": "CD1c-positive myeloid dendritic cell",
-      "pr_id": "PR:000002027",
-      "pr_label": "T-cell surface glycoprotein CD1c",
-      "cd_synonym": "CD1C (exact); CD1c (label)",
-      "species_support": "human",
-      "evidence_source": "m2_literature_report",
-      "citation": "Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)",
-      "quote": "DC2 and DC3 correspond to new subdivisions of the CD1C/BDCA-1+ cDC2",
-      "source_ref": "reports/literature/dc_markers.md",
-      "evidence_links": [
-        {
-          "label": "reports/literature/dc_markers.md",
-          "href": "../../literature/dc_markers.md"
-        }
-      ]
-    }
-  ],
-  "limitations": [
-    "All mappings remain proposals; marker compatibility does not establish equivalence.",
-    "Marker usage is extracted only from valid cells. Invalid cells can hide additional marker usage.",
-    "Empty structured evidence fields do not mean that literature does not exist; consult the narrative.",
-    "CL reverse view covers proposed targets, not the entire Cell Ontology.",
-    "No upstream services were queried. Snapshot age is not proof that an ontology is outdated."
-  ],
-  "evaluation": {
-    "schema_version": 1,
-    "generated_utc": "2026-09-11T04:13:49.655515+00:00",
-    "inputs": {
-      "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44",
-      "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8",
-      "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e",
-      "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c",
-      "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706",
-      "marker_policy": "317578b4b7fb1a9837b9a61fa85c2dc1ea6469eab4404b0435476ba4a12a1f84",
-      "marker_map": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7"
-    },
-    "benchmark_path": "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\matcher_benchmark.tsv",
-    "matcher": {
-      "version": "0.1.0",
-      "source_hashes": {
-        "cl_match.py": "4d447e860e8c500196b2859549b91dac9549afeaee236eedd5d63049ca7f7cec",
-        "phenotype.py": "6d3e7e59b884365fa48596fe1365b8630053b70a6259bb0e8f42413a55a9514a",
-        "marker_syntax.py": "e40620b1d804eec3c1f05251716092abd7f5a273e11ba91ce61a3345b1872ade",
-        "registry.py": "a225ca650e0278378566bf7134b3d8daa33dabee0c61c3d479d8affddf7a25fd",
-        "evaluation.py": "69dd3abd6c1bbf5a5ae453428269179a5cca8b991c1338bb51097dadf06555c5",
-        "audit.py": "4d2bfeff9583efd80c37d8fef51e06abb887410f4b9d88ce9b68bceace8bc9bb",
-        "candidate_index.py": "d4c58041cb4c4a4033d1457ae9f04d2e4d814a2d80469dd7aced2e696539e9a6",
-        "marker_resolution.py": "17feb8779da5a3d429c9d8326d26195cb66bb25cebf9cd005c79410d99efe050"
-      }
-    },
-    "config": {
-      "ks": [
-        1,
-        3,
-        5
-      ],
-      "ranking": "production order, including disqualified candidates",
-      "ties": "primary metrics use production order; bounds report tie sensitivity",
-      "denominator": "all cohort cases, including unscorable profiles and absent targets",
-      "marker_resolution": true,
-      "resolution_policy": "explicit_v1",
-      "local_lexical": false,
-      "lexical_limit": 20,
-      "lexical_min_jaccard": 0.5
-    },
-    "candidate_count": 826,
-    "marker_resolution_issues": [
-      {
-        "marker": "CD15",
-        "reason": "policy_withheld",
-        "representation": "unresolved",
-        "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required."
-      },
-      {
-        "marker": "CD16",
-        "reason": "policy_withheld",
-        "representation": "unresolved",
-        "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required."
-      },
-      {
-        "marker": "CD1D-A-GALCER",
-        "reason": "policy_withheld",
-        "representation": "reagent_gate",
-        "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein."
-      },
-      {
-        "marker": "CD3",
-        "reason": "policy_withheld",
-        "representation": "unresolved",
-        "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required."
-      },
-      {
-        "marker": "CD57",
-        "reason": "policy_withheld",
-        "representation": "reagent_gate",
-        "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein."
-      },
-      {
-        "marker": "CD8",
-        "reason": "policy_withheld",
-        "representation": "unresolved",
-        "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required."
-      },
-      {
-        "marker": "HLA-DR",
-        "reason": "policy_withheld",
-        "representation": "complex",
-        "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence."
-      },
-      {
-        "marker": "IGA",
-        "reason": "policy_withheld",
-        "representation": "protein_family",
-        "rationale": "Registry notes document a non-single-protein or pan-marker representation."
-      },
-      {
-        "marker": "IGD",
-        "reason": "policy_withheld",
-        "representation": "protein_family",
-        "rationale": "Registry notes document a non-single-protein or pan-marker representation."
-      },
-      {
-        "marker": "IGE",
-        "reason": "policy_withheld",
-        "representation": "protein_family",
-        "rationale": "Registry notes document a non-single-protein or pan-marker representation."
-      },
-      {
-        "marker": "IGG",
-        "reason": "policy_withheld",
-        "representation": "protein_family",
-        "rationale": "Registry notes document a non-single-protein or pan-marker representation."
-      },
-      {
-        "marker": "IGM",
-        "reason": "policy_withheld",
-        "representation": "protein_family",
-        "rationale": "Registry notes document a non-single-protein or pan-marker representation."
-      },
-      {
-        "marker": "MR1",
-        "reason": "policy_withheld",
-        "representation": "unresolved",
-        "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required."
-      },
-      {
-        "marker": "TCR",
-        "reason": "policy_withheld",
-        "representation": "protein_family",
-        "rationale": "Registry notes document a non-single-protein or pan-marker representation."
-      },
-      {
-        "marker": "TCRVA24-JA18",
-        "reason": "policy_withheld",
-        "representation": "complex",
-        "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence."
-      },
-      {
-        "marker": "TCRAB",
-        "reason": "policy_withheld",
-        "representation": "complex",
-        "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence."
-      },
-      {
-        "marker": "TCRGD",
-        "reason": "policy_withheld",
-        "representation": "complex",
-        "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence."
-      },
-      {
-        "marker": "TETRAMER",
-        "reason": "policy_withheld",
-        "representation": "reagent_gate",
-        "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein."
-      },
-      {
-        "marker": "V",
-        "reason": "policy_withheld",
-        "representation": "unresolved",
-        "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification."
-      },
-      {
-        "marker": "DELTA",
-        "reason": "policy_withheld",
-        "representation": "unresolved",
-        "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification."
-      },
-      {
-        "marker": "DELTA1",
-        "reason": "policy_withheld",
-        "representation": "unresolved",
-        "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification."
-      },
-      {
-        "marker": "GAMMA",
-        "reason": "policy_withheld",
-        "representation": "unresolved",
-        "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification."
-      }
-    ],
-    "cases": [
-      {
-        "case_id": "provisional/SOULCAP:SC000001/Exact",
-        "cohort": "provisional",
-        "subject_id": "SOULCAP:SC000001",
-        "match_type": "Exact",
-        "targets": [
-          "CL:0000623"
-        ],
-        "evidence_reference": "mappings/curated_mappings.tsv",
-        "uncertain": false,
-        "rank": 6,
-        "rank_best": 6,
-        "rank_worst": 32,
-        "missing_targets": [],
-        "candidates": [
-          {
-            "cl_id": "CL:0002338",
-            "label": "CD56-positive, CD161-positive immature natural killer cell, human",
-            "score": 19,
-            "matched": [
-              "CD14- (1 of 3 alt.)",
-              "CD34-",
-              "CD19-",
-              "CD56+ (1 of 2 alt.)"
-            ],
-            "gaps": [
-              "CD3-",
-              "CD45+",
-              "CD127-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD123-",
-              "CD33-/CD64- (no axiom on any alt.)"
-            ],
-            "contradictions": [],
-            "hint_bonus": 3,
-            "disqualified": false,
-            "candidate_sources": [
-              "marker_axioms"
-            ],
-            "lexical_evidence": null,
-            "resolution_evidence": [
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
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-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001003",
-                "asserted": "True",
-                "paths": [
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-                    "source_token": "CD34",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001003",
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-                      "CD34"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001289",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001889",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD14",
-                    "tokens": [
-                      "CD14"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001889",
-                    "tokens": [
-                      "CD14"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001024",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD56",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001024",
-                    "tokens": [
-                      "CD56"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001381",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD122",
-                    "tokens": [
-                      "CD122"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001874",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000002065",
-                "asserted": "True",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD117",
-                    "tokens": [
-                      "CD117"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000002065",
-                    "tokens": [
-                      "CD117"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          {
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-            "label": "CD16-negative, CD56-bright natural killer cell, human",
-            "score": 15,
-            "matched": [
-              "CD14- (1 of 3 alt.)",
-              "CD19-",
-              "CD56+ (hi) (1 of 2 alt.)"
-            ],
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-              "CD3-",
-              "CD45+",
-              "CD127-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
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-              "CD33-/CD64- (no axiom on any alt.)"
-            ],
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-            "disqualified": false,
-            "candidate_sources": [
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-            "lexical_evidence": null,
-            "resolution_evidence": [
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-                "sense": "high",
-                "pr": "PR:000001024",
-                "asserted": "True",
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-                    "via": "exact_alias",
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-                  },
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-                    "pr": "PR:000001024",
-                    "tokens": [
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-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001002",
-                "asserted": "False",
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-                  {
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-                    "source_token": "CD19",
-                    "tokens": [
-                      "CD19"
-                    ]
-                  },
-                  {
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-                    "pr": "PR:000001002",
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-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001020",
-                "asserted": "False",
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-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  },
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD3E",
-                    "tokens": [
-                      "CD3E"
-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "negative",
-                "pr": "PR:000001289",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD20",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001289",
-                    "tokens": [
-                      "CD20"
-                    ]
-                  }
-                ]
-              },
-              {
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-                "pr": "PR:000001483",
-                "asserted": "True",
-                "paths": []
-              },
-              {
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-                "pr": "PR:000001889",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD14",
-                    "tokens": [
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-                  },
-                  {
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-                  }
-                ]
-              },
-              {
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-                "pr": "PR:000002015",
-                "asserted": "True",
-                "paths": []
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000001319",
-                "asserted": "True",
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-                    "source_token": "CD84",
-                    "tokens": [
-                      "CD84"
-                    ]
-                  }
-                ]
-              }
-            ]
-          },
-          {
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-            "matched": [
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-              "CD19-",
-              "CD56+ (dim) (1 of 2 alt.)"
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-            "gaps": [
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-              "CD3-",
-              "CD45+",
-              "CD127-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
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-              "CD33-/CD64- (no axiom on any alt.)"
-            ],
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-            "disqualified": false,
-            "candidate_sources": [
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-            "resolution_evidence": [
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-                "pr": "PR:000001024",
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-                    "tokens": [
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-                    ]
-                  },
-                  {
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-                  }
-                ]
-              },
-              {
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-                  },
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-              },
-              {
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-                "asserted": "False",
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-                  },
-                  {
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-                  }
-                ]
-              },
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-                "pr": "PR:000001289",
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-              },
-              {
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-                "asserted": "True",
-                "paths": []
-              }
-            ]
-          },
-          {
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-            "candidate_sources": [
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-            "resolution_evidence": [
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-                  },
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-                  }
-                ]
-              },
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-                  },
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-              },
-              {
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-                "asserted": "True",
-                "paths": []
-              },
-              {
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-                "paths": [
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-                  },
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-                    "pr": "PR:000001889",
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-                    ]
-                  }
-                ]
-              },
-              {
-                "sense": "positive",
-                "pr": "PR:000009766",
-                "asserted": "True",
-                "paths": []
-              }
-            ]
-          },
-          {
-            "cl_id": "CL:0001073",
-            "label": "CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human",
-            "score": 13,
-            "matched": [
-              "CD34-",
-              "CD19-",
-              "CD56+ (1 of 2 alt.)"
-            ],
-            "gaps": [
-              "CD14-/CD33-/CD64- (no axiom on any alt.)",
-              "CD3-",
-              "CD45+",
-              "CD127-",
-              "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-              "CD15-/CD66B- (no axiom on any alt.)",
-              "CD123-",
-              "CD33-/CD64- (no axiom on any alt.)"
-            ],
-            "contradictions": [],
-            "hint_bonus": 1,
-            "disqualified": false,
-            "candidate_sources": [
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-            ],
-            "lexical_evidence": null,
-            "resolution_evidence": [
-              {
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-                "pr": "PR:000001002",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD19",
-                    "tokens": [
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-                    ]
-                  },
-                  {
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-                    "pr": "PR:000001002",
-                    "tokens": [
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-                    ]
-                  }
-                ]
-              },
-              {
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-                "pr": "PR:000001003",
-                "asserted": "False",
-                "paths": [
-                  {
-                    "via": "exact_alias",
-                    "source_token": "CD34",
-                    "tokens": [
-                      "CD34"
-                    ]
-                  },
-                  {
-                    "via": "pro_id",
-                    "pr": "PR:000001003",
-                    "tokens": [
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-                    ]
-                  }
-                ]
-              },
-              {
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-                    "source_token": "CD3E",
-                    "tokens": [
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-                  },
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-                    "source_token": "CD3E",
-                    "tokens": [
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-                  }
-                ]
-              },
-              {
-                "sense": "negative",
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-                    "via": "exact_alias",
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-          "change": "unchanged",
-          "before_rank": null,
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-          "after_status": "invalid_profile"
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-        {
-          "case_id": "provisional/SOULCAP:SC000019/Exact",
-          "change": "unchanged",
-          "before_rank": null,
-          "after_rank": null,
-          "before_status": "invalid_profile",
-          "after_status": "invalid_profile"
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-        {
-          "case_id": "provisional/SOULCAP:SC000020/Exact",
-          "change": "unchanged",
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-          "case_id": "provisional/SOULCAP:SC000022/Exact",
-          "change": "unchanged",
-          "before_rank": 4,
-          "after_rank": 4,
-          "before_status": "hit_at_5",
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-        {
-          "case_id": "provisional/SOULCAP:SC000023/Exact",
-          "change": "unchanged",
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-          "before_status": "target_not_in_index",
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-          "case_id": "provisional/SOULCAP:SC000024/Exact",
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-          "before_status": "hit_at_5",
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-          "before_rank": 12,
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-          "before_rank": 13,
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-          "after_status": "below_top_5"
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-        {
-          "case_id": "provisional/SOULCAP:SC000040/Exact",
-          "change": "unchanged",
-          "before_rank": 33,
-          "after_rank": 33,
-          "before_status": "below_top_5",
-          "after_status": "below_top_5"
-        },
-        {
-          "case_id": "provisional/SOULCAP:SC000041/Exact",
-          "change": "unchanged",
-          "before_rank": 14,
-          "after_rank": 14,
-          "before_status": "below_top_5",
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-        {
-          "case_id": "provisional/SOULCAP:SC000042/Exact",
-          "change": "unchanged",
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-          "after_rank": 18,
-          "before_status": "below_top_5",
-          "after_status": "below_top_5"
-        },
-        {
-          "case_id": "provisional/SOULCAP:SC000043/Exact",
-          "change": "unchanged",
-          "before_rank": 18,
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-          "before_status": "below_top_5",
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-        },
-        {
-          "case_id": "provisional/SOULCAP:SC000044/Exact",
-          "change": "unchanged",
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-          "before_status": "below_top_5",
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-        {
-          "case_id": "provisional/SOULCAP:SC000045/Exact",
-          "change": "unchanged",
-          "before_rank": null,
-          "after_rank": null,
-          "before_status": "target_not_in_index",
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-          "change": "regressed",
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-          "change": "regressed",
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-          "before_status": "below_top_5",
-          "after_status": "below_top_5"
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-        {
-          "case_id": "provisional/SOULCAP:SC000048/Broad",
-          "change": "regressed",
-          "before_rank": 63,
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-          "before_status": "below_top_5",
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-        {
-          "case_id": "provisional/SOULCAP:SC000049/Broad",
-          "change": "regressed",
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-          "case_id": "provisional/SOULCAP:SC000050/Broad",
-          "change": "regressed",
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-          "change": "regressed",
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-          "after_rank": 114,
-          "before_status": "below_top_5",
-          "after_status": "below_top_5"
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-        {
-          "case_id": "provisional/SOULCAP:SC000052/Broad",
-          "change": "regressed",
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-          "before_status": "below_top_5",
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-          "after_rank": 115,
-          "before_status": "below_top_5",
-          "after_status": "below_top_5"
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-        {
-          "case_id": "provisional/SOULCAP:SC000054/Broad",
-          "change": "regressed",
-          "before_rank": 34,
-          "after_rank": 87,
-          "before_status": "below_top_5",
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-          "case_id": "provisional/SOULCAP:SC000055/Broad",
-          "change": "regressed",
-          "before_rank": 70,
-          "after_rank": 120,
-          "before_status": "below_top_5",
-          "after_status": "below_top_5"
-        },
-        {
-          "case_id": "provisional/SOULCAP:SC000056/Broad",
-          "change": "regressed",
-          "before_rank": 63,
-          "after_rank": 114,
-          "before_status": "below_top_5",
-          "after_status": "below_top_5"
-        },
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-          "case_id": "provisional/SOULCAP:SC000057/Broad",
-          "change": "regressed",
-          "before_rank": 42,
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-          "case_id": "provisional/SOULCAP:SC000058/Broad",
-          "change": "regressed",
-          "before_rank": 54,
-          "after_rank": 120,
-          "before_status": "below_top_5",
-          "after_status": "below_top_5"
-        },
-        {
-          "case_id": "provisional/SOULCAP:SC000059/Exact",
-          "change": "unchanged",
-          "before_rank": null,
-          "after_rank": null,
-          "before_status": "invalid_profile",
-          "after_status": "invalid_profile"
-        },
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-          "change": "unchanged",
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-          "change": "unchanged",
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-          "change": "regressed",
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-        {
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-        },
-        {
-          "case_id": "provisional/SOULCAP:SC000064/Broad",
-          "change": "unchanged",
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-          "before_status": "target_not_in_index",
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-          "change": "unchanged",
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-          "after_status": "invalid_profile"
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-          "change": "improved",
-          "before_rank": 252,
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-          "before_status": "below_top_5",
-          "after_status": "below_top_5"
-        },
-        {
-          "case_id": "provisional/SOULCAP:SC000092/Exact",
-          "change": "improved",
-          "before_rank": 253,
-          "after_rank": 250,
-          "before_status": "below_top_5",
-          "after_status": "below_top_5"
-        },
-        {
-          "case_id": "provisional/SOULCAP:SC000096/Exact",
-          "change": "regressed",
-          "before_rank": 238,
-          "after_rank": 246,
-          "before_status": "below_top_5",
-          "after_status": "below_top_5"
-        },
-        {
-          "case_id": "provisional/SOULCAP:SC000099/Exact",
-          "change": "regressed",
-          "before_rank": 239,
-          "after_rank": 247,
-          "before_status": "below_top_5",
-          "after_status": "below_top_5"
-        },
-        {
-          "case_id": "provisional/SOULCAP:SC000103/Exact",
-          "change": "unchanged",
-          "before_rank": null,
-          "after_rank": null,
-          "before_status": "target_not_in_index",
-          "after_status": "target_not_in_index"
-        }
-      ]
-    },
-    "status": "current_local_snapshot",
-    "differences": []
-  }
-}
diff --git a/reports/resolver-refinement/enhanced/matcher_evaluation.json b/reports/resolver-refinement/enhanced/matcher_evaluation.json
deleted file mode 100644
index f569407..0000000
--- a/reports/resolver-refinement/enhanced/matcher_evaluation.json
+++ /dev/null
@@ -1,93319 +0,0 @@
-{
-  "schema_version": 1,
-  "generated_utc": "2026-09-11T04:13:42.598982+00:00",
-  "inputs": {
-    "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44",
-    "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8",
-    "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e",
-    "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c",
-    "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706",
-    "marker_policy": "317578b4b7fb1a9837b9a61fa85c2dc1ea6469eab4404b0435476ba4a12a1f84",
-    "marker_map": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7"
-  },
-  "benchmark_path": "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\matcher_benchmark.tsv",
-  "matcher": {
-    "version": "0.1.0",
-    "source_hashes": {
-      "cl_match.py": "4d447e860e8c500196b2859549b91dac9549afeaee236eedd5d63049ca7f7cec",
-      "phenotype.py": "6d3e7e59b884365fa48596fe1365b8630053b70a6259bb0e8f42413a55a9514a",
-      "marker_syntax.py": "e40620b1d804eec3c1f05251716092abd7f5a273e11ba91ce61a3345b1872ade",
-      "registry.py": "a225ca650e0278378566bf7134b3d8daa33dabee0c61c3d479d8affddf7a25fd",
-      "evaluation.py": "69dd3abd6c1bbf5a5ae453428269179a5cca8b991c1338bb51097dadf06555c5",
-      "audit.py": "4d2bfeff9583efd80c37d8fef51e06abb887410f4b9d88ce9b68bceace8bc9bb",
-      "candidate_index.py": "d4c58041cb4c4a4033d1457ae9f04d2e4d814a2d80469dd7aced2e696539e9a6",
-      "marker_resolution.py": "17feb8779da5a3d429c9d8326d26195cb66bb25cebf9cd005c79410d99efe050"
-    }
-  },
-  "config": {
-    "ks": [
-      1,
-      3,
-      5
-    ],
-    "ranking": "production order, including disqualified candidates",
-    "ties": "primary metrics use production order; bounds report tie sensitivity",
-    "denominator": "all cohort cases, including unscorable profiles and absent targets",
-    "marker_resolution": true,
-    "resolution_policy": "explicit_v1",
-    "local_lexical": false,
-    "lexical_limit": 20,
-    "lexical_min_jaccard": 0.5
-  },
-  "candidate_count": 826,
-  "marker_resolution_issues": [
-    {
-      "marker": "CD15",
-      "reason": "policy_withheld",
-      "representation": "unresolved",
-      "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required."
-    },
-    {
-      "marker": "CD16",
-      "reason": "policy_withheld",
-      "representation": "unresolved",
-      "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required."
-    },
-    {
-      "marker": "CD1D-A-GALCER",
-      "reason": "policy_withheld",
-      "representation": "reagent_gate",
-      "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein."
-    },
-    {
-      "marker": "CD3",
-      "reason": "policy_withheld",
-      "representation": "unresolved",
-      "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required."
-    },
-    {
-      "marker": "CD57",
-      "reason": "policy_withheld",
-      "representation": "reagent_gate",
-      "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein."
-    },
-    {
-      "marker": "CD8",
-      "reason": "policy_withheld",
-      "representation": "unresolved",
-      "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required."
-    },
-    {
-      "marker": "HLA-DR",
-      "reason": "policy_withheld",
-      "representation": "complex",
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-      "representation": "protein_family",
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-                  "tokens": [
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-                  "via": "exact_alias",
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-                    "CD127"
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-        "after_status": "hit_at_5"
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-      {
-        "case_id": "provisional/SOULCAP:SC000023/Exact",
-        "change": "unchanged",
-        "before_rank": null,
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-        "before_status": "target_not_in_index",
-        "after_status": "target_not_in_index"
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-      {
-        "case_id": "provisional/SOULCAP:SC000024/Exact",
-        "change": "unchanged",
-        "before_rank": null,
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-        "before_status": "target_not_in_index",
-        "after_status": "target_not_in_index"
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-        "before_status": "hit_at_5",
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-        "change": "improved",
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-        "after_rank": 6,
-        "before_status": "below_top_5",
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-        "case_id": "provisional/SOULCAP:SC000028/Broad",
-        "change": "unchanged",
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-        "after_rank": 1,
-        "before_status": "hit_at_5",
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-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000029/Exact",
-        "change": "regressed",
-        "before_rank": 43,
-        "after_rank": 48,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
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-        "case_id": "provisional/SOULCAP:SC000030/Exact",
-        "change": "unchanged",
-        "before_rank": 20,
-        "after_rank": 20,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000031/Exact",
-        "change": "unchanged",
-        "before_rank": 5,
-        "after_rank": 5,
-        "before_status": "hit_at_5",
-        "after_status": "hit_at_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000032/Exact",
-        "change": "unchanged",
-        "before_rank": 5,
-        "after_rank": 5,
-        "before_status": "hit_at_5",
-        "after_status": "hit_at_5"
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-      {
-        "case_id": "provisional/SOULCAP:SC000033/Broad",
-        "change": "unchanged",
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-        "after_rank": 12,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
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-      {
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-        "change": "unchanged",
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-        "after_rank": 4,
-        "before_status": "hit_at_5",
-        "after_status": "hit_at_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000035/Broad",
-        "change": "unchanged",
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-        "before_status": "hit_at_5",
-        "after_status": "hit_at_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000036/Broad",
-        "change": "unchanged",
-        "before_rank": 12,
-        "after_rank": 12,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
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-        "change": "unchanged",
-        "before_rank": 39,
-        "after_rank": 39,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
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-        "change": "unchanged",
-        "before_rank": 13,
-        "after_rank": 13,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000040/Exact",
-        "change": "unchanged",
-        "before_rank": 33,
-        "after_rank": 33,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000041/Exact",
-        "change": "unchanged",
-        "before_rank": 14,
-        "after_rank": 14,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000042/Exact",
-        "change": "unchanged",
-        "before_rank": 18,
-        "after_rank": 18,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000043/Exact",
-        "change": "unchanged",
-        "before_rank": 18,
-        "after_rank": 18,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000044/Exact",
-        "change": "unchanged",
-        "before_rank": 17,
-        "after_rank": 17,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000045/Exact",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "target_not_in_index",
-        "after_status": "target_not_in_index"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000046/Broad",
-        "change": "regressed",
-        "before_rank": 34,
-        "after_rank": 87,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000047/Broad",
-        "change": "regressed",
-        "before_rank": 42,
-        "after_rank": 127,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000048/Broad",
-        "change": "regressed",
-        "before_rank": 63,
-        "after_rank": 119,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000049/Broad",
-        "change": "regressed",
-        "before_rank": 34,
-        "after_rank": 87,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000050/Broad",
-        "change": "regressed",
-        "before_rank": 70,
-        "after_rank": 120,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000051/Broad",
-        "change": "regressed",
-        "before_rank": 63,
-        "after_rank": 114,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000052/Broad",
-        "change": "regressed",
-        "before_rank": 42,
-        "after_rank": 120,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000053/Broad",
-        "change": "regressed",
-        "before_rank": 54,
-        "after_rank": 115,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000054/Broad",
-        "change": "regressed",
-        "before_rank": 34,
-        "after_rank": 87,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000055/Broad",
-        "change": "regressed",
-        "before_rank": 70,
-        "after_rank": 120,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000056/Broad",
-        "change": "regressed",
-        "before_rank": 63,
-        "after_rank": 114,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000057/Broad",
-        "change": "regressed",
-        "before_rank": 42,
-        "after_rank": 120,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000058/Broad",
-        "change": "regressed",
-        "before_rank": 54,
-        "after_rank": 120,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000059/Exact",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "invalid_profile",
-        "after_status": "invalid_profile"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000060/Exact",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "target_not_in_index",
-        "after_status": "target_not_in_index"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000061/Exact",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "target_not_in_index",
-        "after_status": "target_not_in_index"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000062/Broad",
-        "change": "regressed",
-        "before_rank": 9,
-        "after_rank": 70,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000063/Broad",
-        "change": "regressed",
-        "before_rank": 4,
-        "after_rank": 125,
-        "before_status": "hit_at_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000064/Broad",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "target_not_in_index",
-        "after_status": "target_not_in_index"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000065/Broad",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "target_not_in_index",
-        "after_status": "target_not_in_index"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000066/Exact",
-        "change": "regressed",
-        "before_rank": 9,
-        "after_rank": 69,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000067/Exact",
-        "change": "regressed",
-        "before_rank": 4,
-        "after_rank": 124,
-        "before_status": "hit_at_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000068/Broad",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "target_not_in_index",
-        "after_status": "target_not_in_index"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000069/Broad",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "target_not_in_index",
-        "after_status": "target_not_in_index"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000070/Broad",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "target_not_in_index",
-        "after_status": "target_not_in_index"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000071/Broad",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "target_not_in_index",
-        "after_status": "target_not_in_index"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000072/Broad",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "target_not_in_index",
-        "after_status": "target_not_in_index"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000073/Exact",
-        "change": "regressed",
-        "before_rank": 1,
-        "after_rank": 117,
-        "before_status": "hit_at_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000074/Exact",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "invalid_profile",
-        "after_status": "invalid_profile"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000082/Exact",
-        "change": "regressed",
-        "before_rank": 238,
-        "after_rank": 246,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000085/Exact",
-        "change": "regressed",
-        "before_rank": 239,
-        "after_rank": 247,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000087/Exact",
-        "change": "improved",
-        "before_rank": 252,
-        "after_rank": 249,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000089/Exact",
-        "change": "regressed",
-        "before_rank": 238,
-        "after_rank": 246,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000092/Exact",
-        "change": "improved",
-        "before_rank": 253,
-        "after_rank": 250,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000096/Exact",
-        "change": "regressed",
-        "before_rank": 238,
-        "after_rank": 246,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000099/Exact",
-        "change": "regressed",
-        "before_rank": 239,
-        "after_rank": 247,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000103/Exact",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "target_not_in_index",
-        "after_status": "target_not_in_index"
-      }
-    ]
-  }
-}
diff --git a/reports/resolver-refinement/legacy/matcher_evaluation.json b/reports/resolver-refinement/legacy/matcher_evaluation.json
deleted file mode 100644
index 1050c1e..0000000
--- a/reports/resolver-refinement/legacy/matcher_evaluation.json
+++ /dev/null
@@ -1,14489 +0,0 @@
-{
-  "schema_version": 1,
-  "generated_utc": "2026-09-11T04:13:38.380055+00:00",
-  "inputs": {
-    "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44",
-    "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8",
-    "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e",
-    "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c",
-    "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706"
-  },
-  "benchmark_path": "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\matcher_benchmark.tsv",
-  "matcher": {
-    "version": "0.1.0",
-    "source_hashes": {
-      "cl_match.py": "4d447e860e8c500196b2859549b91dac9549afeaee236eedd5d63049ca7f7cec",
-      "phenotype.py": "6d3e7e59b884365fa48596fe1365b8630053b70a6259bb0e8f42413a55a9514a",
-      "marker_syntax.py": "e40620b1d804eec3c1f05251716092abd7f5a273e11ba91ce61a3345b1872ade",
-      "registry.py": "a225ca650e0278378566bf7134b3d8daa33dabee0c61c3d479d8affddf7a25fd",
-      "evaluation.py": "69dd3abd6c1bbf5a5ae453428269179a5cca8b991c1338bb51097dadf06555c5",
-      "audit.py": "4d2bfeff9583efd80c37d8fef51e06abb887410f4b9d88ce9b68bceace8bc9bb",
-      "candidate_index.py": "d4c58041cb4c4a4033d1457ae9f04d2e4d814a2d80469dd7aced2e696539e9a6",
-      "marker_resolution.py": "17feb8779da5a3d429c9d8326d26195cb66bb25cebf9cd005c79410d99efe050"
-    }
-  },
-  "config": {
-    "ks": [
-      1,
-      3,
-      5
-    ],
-    "ranking": "production order, including disqualified candidates",
-    "ties": "primary metrics use production order; bounds report tie sensitivity",
-    "denominator": "all cohort cases, including unscorable profiles and absent targets",
-    "marker_resolution": false,
-    "resolution_policy": "legacy",
-    "local_lexical": false,
-    "lexical_limit": 20,
-    "lexical_min_jaccard": 0.5
-  },
-  "candidate_count": 826,
-  "marker_resolution_issues": [],
-  "cases": [
-    {
-      "case_id": "provisional/SOULCAP:SC000001/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000001",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000623"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": 6,
-      "rank_best": 6,
-      "rank_worst": 32,
-      "missing_targets": [],
-      "candidates": [
-        {
-          "cl_id": "CL:0002338",
-          "label": "CD56-positive, CD161-positive immature natural killer cell, human",
-          "score": 23,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD34-",
-            "CD3-",
-            "CD19-",
-            "CD56+ (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD45+",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-",
-            "CD33-/CD64- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "score": 19,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-",
-            "CD56+ (hi) (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-",
-            "CD33-/CD64- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0000939",
-          "label": "CD16-positive, CD56-dim natural killer cell, human",
-          "score": 19,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD3-",
-            "CD19-",
-            "CD56+ (dim) (1 of 2 alt.)"
-          ],
-          "gaps": [
-            "CD34-",
-            "CD45+",
-            "CD127-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD123-",
-            "CD33-/CD64- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
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-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
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-      "candidates": [],
-      "target_results": [],
-      "status": "invalid_profile",
-      "note": "invalid expression in Required exclusion: unexpected ')' in group"
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000018/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000018",
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-      "note": "invalid expression in Required exclusion: unexpected ')' in group"
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000019/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000019",
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-    {
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-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000020",
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-    },
-    {
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-          "resolution_evidence": []
-        },
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-            "CD14- (1 of 2 alt.)",
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-          "resolution_evidence": []
-        },
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-        },
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-            "CD66B+ (1 of 2 alt.)",
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-      "match_type": "Exact",
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-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
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-            "CD33+ (1 of 2 alt.)"
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-            "CD45+",
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-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
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-          "resolution_evidence": []
-        },
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-            "CD16-",
-            "CD19-",
-            "CD33+ (1 of 2 alt.)"
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-            "CD193+",
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-          "resolution_evidence": []
-        },
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-            "CD56-",
-            "CD66B+ (1 of 2 alt.)",
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-            "CD19-"
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-            "CD16-",
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-          "resolution_evidence": []
-        },
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-          "cl_id": "CL:0000772",
-          "label": "immature eosinophil",
-          "score": 20,
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-            "CD56-",
-            "CD66B+ (1 of 2 alt.)",
-            "CD193+",
-            "CD19-"
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-            "CD45+",
-            "CD16-",
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-          "candidate_sources": [
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-          "resolution_evidence": []
-        }
-      ],
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-            "CD66B+ (1 of 2 alt.)",
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-            "CD19-"
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-            "CD45+",
-            "CD16-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
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-          "candidate_sources": [
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-          "resolution_evidence": [],
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-          "rank_worst": 7
-        }
-      ],
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-      "note": ""
-    },
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-      "cohort": "provisional",
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-      "match_type": "Exact",
-      "targets": [
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-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
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-      "rank_best": null,
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-            "CD45+",
-            "CD20+ (1 of 2 alt.)",
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-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-          "resolution_evidence": []
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-            "CD45+",
-            "CD20+ (1 of 2 alt.)",
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-            "CD16-",
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-          "resolution_evidence": []
-        },
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-            "CD20+ (1 of 2 alt.)",
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-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-          "resolution_evidence": []
-        },
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-            "CD45+",
-            "CD20+ (1 of 2 alt.)",
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-            "CD16-",
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-          "resolution_evidence": []
-        },
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-            "CD45+",
-            "CD20+ (1 of 2 alt.)",
-            "CD20+"
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-            "CD16-",
-            "CD15-/CD66B- (no axiom on any alt.)",
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-          "resolution_evidence": []
-        }
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-      "note": ""
-    },
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-          "resolution_evidence": []
-        },
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-            "CD8-"
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-            "CD19-/CD20- (no axiom on any alt.)",
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-            "CD8-"
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-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
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-          "resolution_evidence": []
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-          "resolution_evidence": []
-        },
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-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0001024",
-          "label": "CD34-positive, CD38-negative hematopoietic stem cell",
-          "score": 12,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0002343",
-          "label": "decidual natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        }
-      ],
-      "target_results": [
-        {
-          "cl_id": "CL:0000905",
-          "label": "effector memory CD4-positive, alpha-beta T cell",
-          "score": 3,
-          "matched": [],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": [],
-          "rank": 238,
-          "rank_best": 238,
-          "rank_worst": 247
-        }
-      ],
-      "status": "below_top_5",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000099/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000099",
-      "match_type": "Exact",
-      "targets": [
-        "CL:0000913"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": 239,
-      "rank_best": 238,
-      "rank_worst": 247,
-      "missing_targets": [],
-      "candidates": [
-        {
-          "cl_id": "CL:0001057",
-          "label": "myeloid dendritic cell, human",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0002000",
-          "label": "Kit-positive erythroid progenitor cell",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0001024",
-          "label": "CD34-positive, CD38-negative hematopoietic stem cell",
-          "score": 12,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 2,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0002343",
-          "label": "decidual natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        }
-      ],
-      "target_results": [
-        {
-          "cl_id": "CL:0000913",
-          "label": "effector memory CD8-positive, alpha-beta T cell",
-          "score": 3,
-          "matched": [],
-          "gaps": [
-            "CD14-/CD33-/CD64- (no axiom on any alt.)",
-            "CD19-/CD20- (no axiom on any alt.)",
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 3,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": [],
-          "rank": 239,
-          "rank_best": 238,
-          "rank_worst": 247
-        }
-      ],
-      "status": "below_top_5",
-      "note": ""
-    },
-    {
-      "case_id": "provisional/SOULCAP:SC000103/Exact",
-      "cohort": "provisional",
-      "subject_id": "SOULCAP:SC000103",
-      "match_type": "Exact",
-      "targets": [
-        "CL:4030002"
-      ],
-      "evidence_reference": "mappings/curated_mappings.tsv",
-      "uncertain": false,
-      "rank": null,
-      "rank_best": null,
-      "rank_worst": null,
-      "missing_targets": [
-        "CL:4030002"
-      ],
-      "candidates": [
-        {
-          "cl_id": "CL:0001057",
-          "label": "myeloid dendritic cell, human",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0002000",
-          "label": "Kit-positive erythroid progenitor cell",
-          "score": 13,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD123-"
-          ],
-          "gaps": [
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)",
-            "CD16-"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0000938",
-          "label": "CD16-negative, CD56-bright natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0001024",
-          "label": "CD34-positive, CD38-negative hematopoietic stem cell",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        },
-        {
-          "cl_id": "CL:0002343",
-          "label": "decidual natural killer cell, human",
-          "score": 11,
-          "matched": [
-            "CD14- (1 of 3 alt.)",
-            "CD19- (1 of 2 alt.)",
-            "CD16-"
-          ],
-          "gaps": [
-            "CD123-",
-            "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)",
-            "CD15-/CD66B- (no axiom on any alt.)"
-          ],
-          "contradictions": [],
-          "hint_bonus": 1,
-          "disqualified": false,
-          "candidate_sources": [
-            "marker_axioms"
-          ],
-          "lexical_evidence": null,
-          "resolution_evidence": []
-        }
-      ],
-      "target_results": [],
-      "status": "target_not_in_index",
-      "note": ""
-    }
-  ],
-  "metrics": {
-    "reviewed": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "provisional": {
-      "cases": 80,
-      "mrr": 0.1524095320342756,
-      "statuses": {
-        "below_top_5": 42,
-        "hit_at_5": 19,
-        "invalid_profile": 6,
-        "target_not_in_index": 13
-      },
-      "cases_with_missing_targets": 15,
-      "top1_disqualified": 0,
-      "hit_at_1": 0.0875,
-      "hit_at_1_optimistic": 0.125,
-      "hit_at_1_pessimistic": 0.0,
-      "hit_at_3": 0.15,
-      "hit_at_3_optimistic": 0.2,
-      "hit_at_3_pessimistic": 0.0875,
-      "hit_at_5": 0.2375,
-      "hit_at_5_optimistic": 0.275,
-      "hit_at_5_pessimistic": 0.1
-    }
-  },
-  "by_relation": {
-    "reviewed/Exact": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "reviewed/Broad": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "reviewed/Narrow": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "reviewed/Related": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "provisional/Exact": {
-      "cases": 50,
-      "mrr": 0.15217520145714408,
-      "statuses": {
-        "below_top_5": 26,
-        "hit_at_5": 12,
-        "invalid_profile": 6,
-        "target_not_in_index": 6
-      },
-      "cases_with_missing_targets": 8,
-      "top1_disqualified": 0,
-      "hit_at_1": 0.08,
-      "hit_at_1_optimistic": 0.14,
-      "hit_at_1_pessimistic": 0.0,
-      "hit_at_3": 0.16,
-      "hit_at_3_optimistic": 0.18,
-      "hit_at_3_pessimistic": 0.08,
-      "hit_at_5": 0.24,
-      "hit_at_5_optimistic": 0.24,
-      "hit_at_5_pessimistic": 0.1
-    },
-    "provisional/Broad": {
-      "cases": 30,
-      "mrr": 0.1528000829961614,
-      "statuses": {
-        "hit_at_5": 7,
-        "below_top_5": 16,
-        "target_not_in_index": 7
-      },
-      "cases_with_missing_targets": 7,
-      "top1_disqualified": 0,
-      "hit_at_1": 0.1,
-      "hit_at_1_optimistic": 0.1,
-      "hit_at_1_pessimistic": 0.0,
-      "hit_at_3": 0.13333333333333333,
-      "hit_at_3_optimistic": 0.23333333333333334,
-      "hit_at_3_pessimistic": 0.1,
-      "hit_at_5": 0.23333333333333334,
-      "hit_at_5_optimistic": 0.3333333333333333,
-      "hit_at_5_pessimistic": 0.1
-    },
-    "provisional/Narrow": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    },
-    "provisional/Related": {
-      "cases": 0,
-      "mrr": null,
-      "statuses": {},
-      "cases_with_missing_targets": 0,
-      "top1_disqualified": 0,
-      "hit_at_1": null,
-      "hit_at_1_optimistic": null,
-      "hit_at_1_pessimistic": null,
-      "hit_at_3": null,
-      "hit_at_3_optimistic": null,
-      "hit_at_3_pessimistic": null,
-      "hit_at_5": null,
-      "hit_at_5_optimistic": null,
-      "hit_at_5_pessimistic": null
-    }
-  }
-}
diff --git a/reports/resolver-refinement/legacy/matcher_evaluation.md b/reports/resolver-refinement/legacy/matcher_evaluation.md
deleted file mode 100644
index 5ed8fdf..0000000
--- a/reports/resolver-refinement/legacy/matcher_evaluation.md
+++ /dev/null
@@ -1,195 +0,0 @@
-# Matcher evaluation
-
-Target retrieval only; provisional agreement is not validated accuracy.
-All cohort cases remain in denominators, including invalid profiles and absent targets.
-Primary ranks retain production tie ordering and disqualified candidates. Bounds show tie sensitivity.
-
-## Metrics
-
-```json
-{
-  "reviewed": {
-    "cases": 0,
-    "mrr": null,
-    "statuses": {},
-    "cases_with_missing_targets": 0,
-    "top1_disqualified": 0,
-    "hit_at_1": null,
-    "hit_at_1_optimistic": null,
-    "hit_at_1_pessimistic": null,
-    "hit_at_3": null,
-    "hit_at_3_optimistic": null,
-    "hit_at_3_pessimistic": null,
-    "hit_at_5": null,
-    "hit_at_5_optimistic": null,
-    "hit_at_5_pessimistic": null
-  },
-  "provisional": {
-    "cases": 80,
-    "mrr": 0.1524095320342756,
-    "statuses": {
-      "below_top_5": 42,
-      "hit_at_5": 19,
-      "invalid_profile": 6,
-      "target_not_in_index": 13
-    },
-    "cases_with_missing_targets": 15,
-    "top1_disqualified": 0,
-    "hit_at_1": 0.0875,
-    "hit_at_1_optimistic": 0.125,
-    "hit_at_1_pessimistic": 0.0,
-    "hit_at_3": 0.15,
-    "hit_at_3_optimistic": 0.2,
-    "hit_at_3_pessimistic": 0.0875,
-    "hit_at_5": 0.2375,
-    "hit_at_5_optimistic": 0.275,
-    "hit_at_5_pessimistic": 0.1
-  }
-}
-```
-
-## Relation breakdown
-
-```json
-{
-  "reviewed/Exact": {
-    "cases": 0,
-    "mrr": null,
-    "statuses": {},
-    "cases_with_missing_targets": 0,
-    "top1_disqualified": 0,
-    "hit_at_1": null,
-    "hit_at_1_optimistic": null,
-    "hit_at_1_pessimistic": null,
-    "hit_at_3": null,
-    "hit_at_3_optimistic": null,
-    "hit_at_3_pessimistic": null,
-    "hit_at_5": null,
-    "hit_at_5_optimistic": null,
-    "hit_at_5_pessimistic": null
-  },
-  "reviewed/Broad": {
-    "cases": 0,
-    "mrr": null,
-    "statuses": {},
-    "cases_with_missing_targets": 0,
-    "top1_disqualified": 0,
-    "hit_at_1": null,
-    "hit_at_1_optimistic": null,
-    "hit_at_1_pessimistic": null,
-    "hit_at_3": null,
-    "hit_at_3_optimistic": null,
-    "hit_at_3_pessimistic": null,
-    "hit_at_5": null,
-    "hit_at_5_optimistic": null,
-    "hit_at_5_pessimistic": null
-  },
-  "reviewed/Narrow": {
-    "cases": 0,
-    "mrr": null,
-    "statuses": {},
-    "cases_with_missing_targets": 0,
-    "top1_disqualified": 0,
-    "hit_at_1": null,
-    "hit_at_1_optimistic": null,
-    "hit_at_1_pessimistic": null,
-    "hit_at_3": null,
-    "hit_at_3_optimistic": null,
-    "hit_at_3_pessimistic": null,
-    "hit_at_5": null,
-    "hit_at_5_optimistic": null,
-    "hit_at_5_pessimistic": null
-  },
-  "reviewed/Related": {
-    "cases": 0,
-    "mrr": null,
-    "statuses": {},
-    "cases_with_missing_targets": 0,
-    "top1_disqualified": 0,
-    "hit_at_1": null,
-    "hit_at_1_optimistic": null,
-    "hit_at_1_pessimistic": null,
-    "hit_at_3": null,
-    "hit_at_3_optimistic": null,
-    "hit_at_3_pessimistic": null,
-    "hit_at_5": null,
-    "hit_at_5_optimistic": null,
-    "hit_at_5_pessimistic": null
-  },
-  "provisional/Exact": {
-    "cases": 50,
-    "mrr": 0.15217520145714408,
-    "statuses": {
-      "below_top_5": 26,
-      "hit_at_5": 12,
-      "invalid_profile": 6,
-      "target_not_in_index": 6
-    },
-    "cases_with_missing_targets": 8,
-    "top1_disqualified": 0,
-    "hit_at_1": 0.08,
-    "hit_at_1_optimistic": 0.14,
-    "hit_at_1_pessimistic": 0.0,
-    "hit_at_3": 0.16,
-    "hit_at_3_optimistic": 0.18,
-    "hit_at_3_pessimistic": 0.08,
-    "hit_at_5": 0.24,
-    "hit_at_5_optimistic": 0.24,
-    "hit_at_5_pessimistic": 0.1
-  },
-  "provisional/Broad": {
-    "cases": 30,
-    "mrr": 0.1528000829961614,
-    "statuses": {
-      "hit_at_5": 7,
-      "below_top_5": 16,
-      "target_not_in_index": 7
-    },
-    "cases_with_missing_targets": 7,
-    "top1_disqualified": 0,
-    "hit_at_1": 0.1,
-    "hit_at_1_optimistic": 0.1,
-    "hit_at_1_pessimistic": 0.0,
-    "hit_at_3": 0.13333333333333333,
-    "hit_at_3_optimistic": 0.23333333333333334,
-    "hit_at_3_pessimistic": 0.1,
-    "hit_at_5": 0.23333333333333334,
-    "hit_at_5_optimistic": 0.3333333333333333,
-    "hit_at_5_pessimistic": 0.1
-  },
-  "provisional/Narrow": {
-    "cases": 0,
-    "mrr": null,
-    "statuses": {},
-    "cases_with_missing_targets": 0,
-    "top1_disqualified": 0,
-    "hit_at_1": null,
-    "hit_at_1_optimistic": null,
-    "hit_at_1_pessimistic": null,
-    "hit_at_3": null,
-    "hit_at_3_optimistic": null,
-    "hit_at_3_pessimistic": null,
-    "hit_at_5": null,
-    "hit_at_5_optimistic": null,
-    "hit_at_5_pessimistic": null
-  },
-  "provisional/Related": {
-    "cases": 0,
-    "mrr": null,
-    "statuses": {},
-    "cases_with_missing_targets": 0,
-    "top1_disqualified": 0,
-    "hit_at_1": null,
-    "hit_at_1_optimistic": null,
-    "hit_at_1_pessimistic": null,
-    "hit_at_3": null,
-    "hit_at_3_optimistic": null,
-    "hit_at_3_pessimistic": null,
-    "hit_at_5": null,
-    "hit_at_5_optimistic": null,
-    "hit_at_5_pessimistic": null
-  }
-}
-```
-
-See matcher_evaluation.tsv for per-case failures and matcher_evaluation.json for full evidence and provenance.
diff --git a/reports/resolver-refinement/legacy/matcher_evaluation.tsv b/reports/resolver-refinement/legacy/matcher_evaluation.tsv
deleted file mode 100644
index e878348..0000000
--- a/reports/resolver-refinement/legacy/matcher_evaluation.tsv
+++ /dev/null
@@ -1,81 +0,0 @@
-case_id	cohort	subject_id	match_type	targets	status	rank	rank_best	rank_worst	missing_targets	note	candidates	target_results
-provisional/SOULCAP:SC000001/Exact	provisional	SOULCAP:SC000001	Exact	"[""CL:0000623""]"	below_top_5	6	6	32	[]		"[{""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (hi) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (hi) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+/CD56:high (no axiom on any alt.)"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 6, ""rank_best"": 6, ""rank_worst"": 32}]"
-provisional/SOULCAP:SC000002/Exact	provisional	SOULCAP:SC000002	Exact	"[""CL:0000938""]"	hit_at_5	1	1	2	[]		"[{""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56:high (hi)"", ""CD16- (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56:high (hi)"", ""CD16- (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD56:high"", ""CD127-"", ""CD16-/CD16:low (no axiom on any alt.)"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56:high"", ""CD127-"", ""CD16-/CD16:low (no axiom on any alt.)"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000823"", ""label"": ""immature natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56:high"", ""CD127-"", ""CD16-/CD16:low (no axiom on any alt.)"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56:high (hi)"", ""CD16- (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]"
-provisional/SOULCAP:SC000003/Exact	provisional	SOULCAP:SC000003	Exact	"[""CL:0000939""]"	hit_at_5	1	1	2	[]		"[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD45+"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+/CD56:high (no axiom on any alt.)"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000823"", ""label"": ""immature natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+/CD56:high (no axiom on any alt.)"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]"
-provisional/SOULCAP:SC000004/Broad	provisional	SOULCAP:SC000004	Broad	"[""CL:0000939""]"	hit_at_5	1	1	2	[]		"[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD45+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002346"", ""label"": ""Dx5-negative, NK1.1-positive immature natural killer cell, mouse"", ""score"": 16, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002438"", ""label"": ""NK1.1-positive natural killer cell, mouse"", ""score"": 16, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]"
-provisional/SOULCAP:SC000005/Broad	provisional	SOULCAP:SC000005	Broad	"[""CL:0000939""]"	hit_at_5	1	1	2	[]		"[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD45+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000823"", ""label"": ""immature natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]"
-provisional/SOULCAP:SC000006/Broad	provisional	SOULCAP:SC000006	Broad	"[""CL:0001074""]"	hit_at_5	3	3	3	[]		"[{""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 15, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001076"", ""label"": ""NKp46-positive innate lymphoid cell, human"", ""score"": 15, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001074"", ""label"": ""CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human"", ""score"": 14, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 13, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001072"", ""label"": ""CD34-negative, CD117-positive innate lymphoid cell, human"", ""score"": 11, ""matched"": [""CD3-"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD56+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0001074"", ""label"": ""CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human"", ""score"": 14, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 3, ""rank_best"": 3, ""rank_worst"": 3}]"
-provisional/SOULCAP:SC000007/Exact	provisional	SOULCAP:SC000007	Exact	"[""CL:0001065""]"	below_top_5	155	155	159	[]		"[{""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 23, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 23, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 23, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD123-""], ""gaps"": [""CD45+"", ""CD127+"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002089"", ""label"": ""group 2 innate lymphoid cell, mouse"", ""score"": 23, ""matched"": [""CD33- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD127+""], ""gaps"": [""CD34-"", ""CD45+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0001065"", ""label"": ""innate lymphoid cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD19-"", ""CD3-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD127+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 155, ""rank_best"": 155, ""rank_worst"": 159}]"
-provisional/SOULCAP:SC000008/Exact	provisional	SOULCAP:SC000008	Exact	"[""CL:0001067""]"	below_top_5	161	150	165	[]		"[{""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117-"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117-"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117-"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 27, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD56-"", ""CD123-""], ""gaps"": [""CD45+"", ""CD127+"", ""CD117-"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002089"", ""label"": ""group 2 innate lymphoid cell, mouse"", ""score"": 27, ""matched"": [""CD33- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD127+"", ""CD56-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD117-"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0001067"", ""label"": ""group 1 innate lymphoid cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD19-"", ""CD3-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD127+"", ""CD56-"", ""CD117-"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 161, ""rank_best"": 150, ""rank_worst"": 165}]"
-provisional/SOULCAP:SC000009/Exact	provisional	SOULCAP:SC000009	Exact	"[""CL:0001081""]"	below_top_5	26	25	32	[]		"[{""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 29, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD117:low (dim) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD127+"", ""CD294+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 27, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD56-"", ""CD123-""], ""gaps"": [""CD45+"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0001081"", ""label"": ""group 2 innate lymphoid cell, human"", ""score"": 23, ""matched"": [""CD3-"", ""CD19-"", ""CD3-"", ""CD127+"", ""CD294+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD56-"", ""CD117:low/CD117- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 26, ""rank_best"": 25, ""rank_worst"": 32}]"
-provisional/SOULCAP:SC000010/Exact	provisional	SOULCAP:SC000010	Exact	"[""CL:0001078""]"	below_top_5	118	118	120	[]		"[{""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 29, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD117+ (dim)""], ""gaps"": [""CD34-"", ""CD127+"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002344"", ""label"": ""CD56-negative, CD161-positive immature natural killer cell, human"", ""score"": 29, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117+"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117+"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117+"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0001078"", ""label"": ""group 3 innate lymphoid cell, human"", ""score"": 19, ""matched"": [""CD3-"", ""CD19-"", ""CD3-"", ""CD127+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD56:low/CD56- (no axiom on any alt.)"", ""CD117+"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 118, ""rank_best"": 118, ""rank_worst"": 120}]"
-provisional/SOULCAP:SC000011/Exact	provisional	SOULCAP:SC000011	Exact	"[""CL:0000990""]"	below_top_5	18	15	21	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 21, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD3-"", ""CD19-"", ""CD56-"", ""CD127-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""CD11C:high"", ""HLA-DR+""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000782"", ""label"": ""myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002399"", ""label"": ""CD1c-positive myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000990"", ""label"": ""conventional dendritic cell"", ""score"": 13, ""matched"": [""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD123:not:high/CD193- (no axiom on any alt.)"", ""CD123:not:high/CD303- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 18, ""rank_best"": 15, ""rank_worst"": 21}]"
-provisional/SOULCAP:SC000012/Exact	provisional	SOULCAP:SC000012	Exact	"[""CL:0002394""]"	hit_at_5	2	1	2	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD141+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 21, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD3-"", ""CD19-"", ""CD56-"", ""CD127-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""CD11C:high"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000782"", ""label"": ""myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0011031"", ""label"": ""monocyte-derived dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD141+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 2, ""rank_best"": 1, ""rank_worst"": 2}]"
-provisional/SOULCAP:SC000013/Exact	provisional	SOULCAP:SC000013	Exact	"[""CL:0002399""]"	hit_at_5	2	1	2	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002399"", ""label"": ""CD1c-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD1C+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 21, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD3-"", ""CD19-"", ""CD56-"", ""CD127-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""CD11C:high"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000782"", ""label"": ""myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0002399"", ""label"": ""CD1c-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD1C+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 2, ""rank_best"": 1, ""rank_worst"": 2}]"
-provisional/SOULCAP:SC000014/Exact	provisional	SOULCAP:SC000014	Exact	"[""CL:0001058""]"	below_top_5	34	27	42	[]		"[{""cl_id"": ""CL:0000991"", ""label"": ""CD11c-negative plasmacytoid dendritic cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD303+ (1 of 3 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000994"", ""label"": ""immature CD11c-negative plasmacytoid dendritic cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD303+ (1 of 3 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000996"", ""label"": ""mature CD11c-negative plasmacytoid dendritic cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD303+ (1 of 3 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002008"", ""label"": ""CD34-positive, CD38-positive eosinophil progenitor cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD193-/FCER1A-/CD303+ (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD193-/FCER1A-/CD303+ (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0001058"", ""label"": ""plasmacytoid dendritic cell, human"", ""score"": 12, ""matched"": [""CD3-"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD45+"", ""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD193-/FCER1A-/CD303+ (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 27, ""rank_worst"": 42}]"
-provisional/SOULCAP:SC000015/Exact	provisional	SOULCAP:SC000015	Exact	"[""CL:0000043""]"	hit_at_5	3	3	7	[]		"[{""cl_id"": ""CL:0000614"", ""label"": ""basophilic myelocyte"", ""score"": 18, ""matched"": [""CD3-"", ""CD33+ (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-"", ""CD16-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD14-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [""CD15-/CD66B- (all alt. conflict)""], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002008"", ""label"": ""CD34-positive, CD38-positive eosinophil progenitor cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD123+ (1 of 2 alt.)"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD193+/FCER1A+/HLA-DR-/CD303- (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD123+ (hi) (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000612"", ""label"": ""eosinophilic myelocyte"", ""score"": 17, ""matched"": [""CD3-"", ""CD33+ (1 of 2 alt.)"", ""CD193+ (1 of 4 alt.)"", ""CD56-"", ""CD19-"", ""CD16-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD14-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [""CD15-/CD66B- (all alt. conflict)""], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000767"", ""label"": ""basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD123+ (hi) (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD123+ (hi) (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 3, ""rank_best"": 3, ""rank_worst"": 7}]"
-provisional/SOULCAP:SC000016/Exact	provisional	SOULCAP:SC000016	Exact	"[""CL:0000043""]"	hit_at_5	1	1	4	[]		"[{""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000767"", ""label"": ""basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000768"", ""label"": ""immature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000770"", ""label"": ""band form basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000942"", ""label"": ""thymic plasmacytoid dendritic cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD45+"", ""CD123+"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD193+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 4}]"
-provisional/SOULCAP:SC000017/Exact	provisional	SOULCAP:SC000017	Exact	"[""CL:0000576""]"	invalid_profile				"[""CL:0000576""]"	invalid expression in Required exclusion: unexpected ')' in group	[]	[]
-provisional/SOULCAP:SC000018/Exact	provisional	SOULCAP:SC000018	Exact	"[""CL:0000860""]"	invalid_profile				[]	invalid expression in Required exclusion: unexpected ')' in group	[]	[]
-provisional/SOULCAP:SC000019/Exact	provisional	SOULCAP:SC000019	Exact	"[""CL:0000875""]"	invalid_profile				[]	invalid expression in Required exclusion: unexpected ')' in group	[]	[]
-provisional/SOULCAP:SC000020/Exact	provisional	SOULCAP:SC000020	Exact	"[""CL:0002393""]"	invalid_profile				[]	invalid expression in Required exclusion: unexpected ')' in group	[]	[]
-provisional/SOULCAP:SC000021/Exact	provisional	SOULCAP:SC000021	Exact	"[""CL:0000775""]"	below_top_5	9	7	16	[]		"[{""cl_id"": ""CL:0000582"", ""label"": ""neutrophilic metamyelocyte"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD19-"", ""CD33+ (1 of 2 alt.)""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001021"", ""label"": ""CD34-positive, CD38-positive common lymphoid progenitor"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD45+"", ""CD19-""], ""gaps"": [""CD123-"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD123-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD123-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD45+"", ""CD19-""], ""gaps"": [""CD123-"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000775"", ""label"": ""neutrophil"", ""score"": 16, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 9, ""rank_best"": 7, ""rank_worst"": 16}]"
-provisional/SOULCAP:SC000022/Exact	provisional	SOULCAP:SC000022	Exact	"[""CL:0000771""]"	hit_at_5	4	2	7	[]		"[{""cl_id"": ""CL:0000612"", ""label"": ""eosinophilic myelocyte"", ""score"": 26, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD16-"", ""CD19-"", ""CD33+ (1 of 2 alt.)""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000041"", ""label"": ""mature eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000580"", ""label"": ""neutrophilic myelocyte"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD16-"", ""CD19-"", ""CD33+ (1 of 2 alt.)""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD193+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000771"", ""label"": ""eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000772"", ""label"": ""immature eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000771"", ""label"": ""eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 2, ""rank_worst"": 7}]"
-provisional/SOULCAP:SC000023/Exact	provisional	SOULCAP:SC000023	Exact	"[""CL:0000236""]"	target_not_in_index				"[""CL:0000236""]"		"[{""cl_id"": ""CL:0000819"", ""label"": ""B-1 B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000820"", ""label"": ""B-1a B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000821"", ""label"": ""B-1b B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000843"", ""label"": ""follicular B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000024/Exact	provisional	SOULCAP:SC000024	Exact	"[""CL:0000946""]"	target_not_in_index				"[""CL:0000946""]"		"[{""cl_id"": ""CL:0000949"", ""label"": ""IgD plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000950"", ""label"": ""IgE plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000980"", ""label"": ""plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000982"", ""label"": ""IgG plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000983"", ""label"": ""IgM plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000025/Exact	provisional	SOULCAP:SC000025	Exact	"[""CL:0000980""]"	hit_at_5	3	1	7	[]		"[{""cl_id"": ""CL:0000949"", ""label"": ""IgD plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000950"", ""label"": ""IgE plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000980"", ""label"": ""plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000982"", ""label"": ""IgG plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000983"", ""label"": ""IgM plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000980"", ""label"": ""plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 3, ""rank_best"": 1, ""rank_worst"": 7}]"
-provisional/SOULCAP:SC000026/Exact	provisional	SOULCAP:SC000026	Exact	"[""CL:0000786""]"	below_top_5	31	31	53	[]		"[{""cl_id"": ""CL:0002047"", ""label"": ""fraction B precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002049"", ""label"": ""fraction C precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002050"", ""label"": ""fraction C' precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002051"", ""label"": ""CD38-high pre-BCR positive cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD19+"", ""CD38:high (hi)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002052"", ""label"": ""fraction D precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 8, ""matched"": [""CD138+"", ""CD20-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD3-"", ""CD56-"", ""CD45+"", ""CD19+"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 31, ""rank_best"": 31, ""rank_worst"": 53}]"
-provisional/SOULCAP:SC000028/Broad	provisional	SOULCAP:SC000028	Broad	"[""CL:0000818""]"	hit_at_5	1	1	6	[]		"[{""cl_id"": ""CL:0000818"", ""label"": ""transitional stage B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000958"", ""label"": ""T1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000959"", ""label"": ""T2 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000960"", ""label"": ""T3 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:high/CD10:high (no axiom on any alt.)"", ""CD24:high"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000818"", ""label"": ""transitional stage B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 6}]"
-provisional/SOULCAP:SC000029/Exact	provisional	SOULCAP:SC000029	Exact	"[""CL:0000785""]"	below_top_5	43	43	45	[]		"[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002055"", ""label"": ""CD38-negative immature B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000785"", ""label"": ""mature B cell"", ""score"": 10, ""matched"": [""CD3-"", ""CD19+ (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20+""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 43, ""rank_best"": 43, ""rank_worst"": 45}]"
-provisional/SOULCAP:SC000030/Exact	provisional	SOULCAP:SC000030	Exact	"[""CL:0000960""]"	below_top_5	20	13	26	[]		"[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10:low (no axiom on any alt.)"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10:low (no axiom on any alt.)"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002054"", ""label"": ""fraction E immature B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+"", ""CD127-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low/CD38-/CD10:low (no axiom on any alt.)"", ""IGD+"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000960"", ""label"": ""T3 B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10:low (no axiom on any alt.)"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 20, ""rank_best"": 13, ""rank_worst"": 26}]"
-provisional/SOULCAP:SC000031/Exact	provisional	SOULCAP:SC000031	Exact	"[""CL:0000788""]"	hit_at_5	5	5	8	[]		"[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000788"", ""label"": ""naive B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000788"", ""label"": ""naive B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 5, ""rank_best"": 5, ""rank_worst"": 8}]"
-provisional/SOULCAP:SC000032/Exact	provisional	SOULCAP:SC000032	Exact	"[""CL:0000981""]"	hit_at_5	5	5	8	[]		"[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 5, ""rank_best"": 5, ""rank_worst"": 8}]"
-provisional/SOULCAP:SC000033/Broad	provisional	SOULCAP:SC000033	Broad	"[""CL:0000981""]"	below_top_5	12	12	19	[]		"[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 23, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002055"", ""label"": ""CD38-negative immature B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+ (dim)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000843"", ""label"": ""follicular B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000959"", ""label"": ""T2 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 12, ""rank_best"": 12, ""rank_worst"": 19}]"
-provisional/SOULCAP:SC000034/Broad	provisional	SOULCAP:SC000034	Broad	"[""CL:0000981""]"	hit_at_5	4	4	6	[]		"[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002103"", ""label"": ""IgG-positive double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 4, ""rank_worst"": 6}]"
-provisional/SOULCAP:SC000035/Broad	provisional	SOULCAP:SC000035	Broad	"[""CL:0000981""]"	hit_at_5	5	5	12	[]		"[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000958"", ""label"": ""T1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD21-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)"", ""IGD-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 5, ""rank_best"": 5, ""rank_worst"": 12}]"
-provisional/SOULCAP:SC000036/Broad	provisional	SOULCAP:SC000036	Broad	"[""CL:0000981""]"	below_top_5	12	12	19	[]		"[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 23, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002055"", ""label"": ""CD38-negative immature B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+ (dim)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000843"", ""label"": ""follicular B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000959"", ""label"": ""T2 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 12, ""rank_best"": 12, ""rank_worst"": 19}]"
-provisional/SOULCAP:SC000037/Exact	provisional	SOULCAP:SC000037	Exact	"[""CL:0000787""]"	below_top_5	39	39	42	[]		"[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002108"", ""label"": ""CD38-negative IgG memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000787"", ""label"": ""memory B cell"", ""score"": 12, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 39, ""rank_best"": 39, ""rank_worst"": 42}]"
-provisional/SOULCAP:SC000039/Exact	provisional	SOULCAP:SC000039	Exact	"[""CL:0000970""]"	below_top_5	13	13	14	[]		"[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002116"", ""label"": ""B220-low CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000970"", ""label"": ""unswitched memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 13, ""rank_best"": 13, ""rank_worst"": 14}]"
-provisional/SOULCAP:SC000040/Exact	provisional	SOULCAP:SC000040	Exact	"[""CL:0000971""]"	below_top_5	33	33	39	[]		"[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002108"", ""label"": ""CD38-negative IgG memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000971"", ""label"": ""IgM memory B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 33, ""rank_best"": 33, ""rank_worst"": 39}]"
-provisional/SOULCAP:SC000041/Exact	provisional	SOULCAP:SC000041	Exact	"[""CL:0000972""]"	below_top_5	14	13	18	[]		"[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002116"", ""label"": ""B220-low CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000972"", ""label"": ""class switched memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 14, ""rank_best"": 13, ""rank_worst"": 18}]"
-provisional/SOULCAP:SC000042/Exact	provisional	SOULCAP:SC000042	Exact	"[""CL:0000973""]"	below_top_5	18	17	19	[]		"[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002118"", ""label"": ""CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002120"", ""label"": ""CD24-positive CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002121"", ""label"": ""CD24-negative CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000973"", ""label"": ""IgA memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 18, ""rank_best"": 17, ""rank_worst"": 19}]"
-provisional/SOULCAP:SC000043/Exact	provisional	SOULCAP:SC000043	Exact	"[""CL:0000979""]"	below_top_5	18	17	22	[]		"[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002118"", ""label"": ""CD38-negative IgG-negative class switched memory B cell"", ""score"": 22, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002120"", ""label"": ""CD24-positive CD38-negative IgG-negative class switched memory B cell"", ""score"": 22, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002121"", ""label"": ""CD24-negative CD38-negative IgG-negative class switched memory B cell"", ""score"": 22, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000979"", ""label"": ""IgG memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 18, ""rank_best"": 17, ""rank_worst"": 22}]"
-provisional/SOULCAP:SC000044/Exact	provisional	SOULCAP:SC000044	Exact	"[""CL:0000948""]"	below_top_5	17	17	19	[]		"[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002118"", ""label"": ""CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002120"", ""label"": ""CD24-positive CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002121"", ""label"": ""CD24-negative CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000948"", ""label"": ""IgE memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 17, ""rank_best"": 17, ""rank_worst"": 19}]"
-provisional/SOULCAP:SC000045/Exact	provisional	SOULCAP:SC000045	Exact	"[""CL:0000084""]"	target_not_in_index				"[""CL:0000084""]"		"[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000046/Broad	provisional	SOULCAP:SC000046	Broad	"[""CL:4052055""]"	below_top_5	34	2	34	[]		"[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 2, ""rank_worst"": 34}]"
-provisional/SOULCAP:SC000047/Broad	provisional	SOULCAP:SC000047	Broad	"[""CL:4052055""]"	below_top_5	42	13	42	[]		"[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002430"", ""label"": ""CD4-intermediate, CD8-positive double-positive thymocyte"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002431"", ""label"": ""CD4-positive, CD8-intermediate double-positive thymocyte"", ""score"": 9, ""matched"": [""CD4+"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD4+"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 42, ""rank_best"": 13, ""rank_worst"": 42}]"
-provisional/SOULCAP:SC000048/Broad	provisional	SOULCAP:SC000048	Broad	"[""CL:4052055""]"	below_top_5	63	39	63	[]		"[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 14, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 14, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 14, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD4-"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 63, ""rank_best"": 39, ""rank_worst"": 63}]"
-provisional/SOULCAP:SC000049/Broad	provisional	SOULCAP:SC000049	Broad	"[""CL:4052055""]"	below_top_5	34	2	34	[]		"[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 2, ""rank_worst"": 34}]"
-provisional/SOULCAP:SC000050/Broad	provisional	SOULCAP:SC000050	Broad	"[""CL:4052055""]"	below_top_5	70	42	70	[]		"[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4+"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 70, ""rank_best"": 42, ""rank_worst"": 70}]"
-provisional/SOULCAP:SC000051/Broad	provisional	SOULCAP:SC000051	Broad	"[""CL:4052055""]"	below_top_5	63	34	63	[]		"[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4-"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 63, ""rank_best"": 34, ""rank_worst"": 63}]"
-provisional/SOULCAP:SC000052/Broad	provisional	SOULCAP:SC000052	Broad	"[""CL:4052055""]"	below_top_5	42	9	42	[]		"[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4+"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 42, ""rank_best"": 9, ""rank_worst"": 42}]"
-provisional/SOULCAP:SC000053/Broad	provisional	SOULCAP:SC000053	Broad	"[""CL:4052055""]"	below_top_5	54	30	54	[]		"[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4-"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 54, ""rank_best"": 30, ""rank_worst"": 54}]"
-provisional/SOULCAP:SC000054/Broad	provisional	SOULCAP:SC000054	Broad	"[""CL:4052055""]"	below_top_5	34	2	34	[]		"[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 2, ""rank_worst"": 34}]"
-provisional/SOULCAP:SC000055/Broad	provisional	SOULCAP:SC000055	Broad	"[""CL:4052055""]"	below_top_5	70	42	70	[]		"[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4+"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 70, ""rank_best"": 42, ""rank_worst"": 70}]"
-provisional/SOULCAP:SC000056/Broad	provisional	SOULCAP:SC000056	Broad	"[""CL:4052055""]"	below_top_5	63	34	63	[]		"[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4-"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 63, ""rank_best"": 34, ""rank_worst"": 63}]"
-provisional/SOULCAP:SC000057/Broad	provisional	SOULCAP:SC000057	Broad	"[""CL:4052055""]"	below_top_5	42	9	42	[]		"[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4+"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 42, ""rank_best"": 9, ""rank_worst"": 42}]"
-provisional/SOULCAP:SC000058/Broad	provisional	SOULCAP:SC000058	Broad	"[""CL:4052055""]"	below_top_5	54	30	54	[]		"[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4-"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 54, ""rank_best"": 30, ""rank_worst"": 54}]"
-provisional/SOULCAP:SC000059/Exact	provisional	SOULCAP:SC000059	Exact	"[""CL:0000814""]"	invalid_profile				[]	invalid expression in Required phenotypic markers: mixed '|' and space in a group	[]	[]
-provisional/SOULCAP:SC000060/Exact	provisional	SOULCAP:SC000060	Exact	"[""CL:0000789""]"	target_not_in_index				"[""CL:0000789""]"		"[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000061/Exact	provisional	SOULCAP:SC000061	Exact	"[""CL:0000798""]"	target_not_in_index				"[""CL:0000798""]"		"[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000062/Broad	provisional	SOULCAP:SC000062	Broad	"[""CL:0000624""]"	below_top_5	9	6	36	[]		"[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000624"", ""label"": ""CD4-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 9, ""rank_best"": 6, ""rank_worst"": 36}]"
-provisional/SOULCAP:SC000063/Broad	provisional	SOULCAP:SC000063	Broad	"[""CL:0000625""]"	hit_at_5	4	4	27	[]		"[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 4, ""rank_worst"": 27}]"
-provisional/SOULCAP:SC000064/Broad	provisional	SOULCAP:SC000064	Broad	"[""CL:0000789""]"	target_not_in_index				"[""CL:0000789""]"		"[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000065/Broad	provisional	SOULCAP:SC000065	Broad	"[""CL:0000084""]"	target_not_in_index				"[""CL:0000084""]"		"[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000066/Exact	provisional	SOULCAP:SC000066	Exact	"[""CL:0000624""]"	below_top_5	9	6	36	[]		"[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000624"", ""label"": ""CD4-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 9, ""rank_best"": 6, ""rank_worst"": 36}]"
-provisional/SOULCAP:SC000067/Exact	provisional	SOULCAP:SC000067	Exact	"[""CL:0000625""]"	hit_at_5	4	4	27	[]		"[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 4, ""rank_worst"": 27}]"
-provisional/SOULCAP:SC000068/Broad	provisional	SOULCAP:SC000068	Broad	"[""CL:0000789""]"	target_not_in_index				"[""CL:0000789""]"		"[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000069/Broad	provisional	SOULCAP:SC000069	Broad	"[""CL:0000789""]"	target_not_in_index				"[""CL:0000789""]"		"[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000070/Broad	provisional	SOULCAP:SC000070	Broad	"[""CL:0000798""]"	target_not_in_index				"[""CL:0000798""]"		"[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000071/Broad	provisional	SOULCAP:SC000071	Broad	"[""CL:0000798""]"	target_not_in_index				"[""CL:0000798""]"		"[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000072/Broad	provisional	SOULCAP:SC000072	Broad	"[""CL:0000798""]"	target_not_in_index				"[""CL:0000798""]"		"[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
-provisional/SOULCAP:SC000073/Exact	provisional	SOULCAP:SC000073	Exact	"[""CL:0000803""]"	hit_at_5	1	1	6	[]		"[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 6}]"
-provisional/SOULCAP:SC000074/Exact	provisional	SOULCAP:SC000074	Exact	"[""CL:0000940""]"	invalid_profile				"[""CL:0000940""]"	invalid expression in Required phenotypic markers: mixed '|' and space in a group	[]	[]
-provisional/SOULCAP:SC000082/Exact	provisional	SOULCAP:SC000082	Exact	"[""CL:0000904""]"	below_top_5	238	238	243	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000904"", ""label"": ""central memory CD4-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 238, ""rank_best"": 238, ""rank_worst"": 243}]"
-provisional/SOULCAP:SC000085/Exact	provisional	SOULCAP:SC000085	Exact	"[""CL:0000907""]"	below_top_5	239	238	243	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000907"", ""label"": ""central memory CD8-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 239, ""rank_best"": 238, ""rank_worst"": 243}]"
-provisional/SOULCAP:SC000087/Exact	provisional	SOULCAP:SC000087	Exact	"[""CL:0000898""]"	below_top_5	252	243	261	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000898"", ""label"": ""naive T cell"", ""score"": 2, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 252, ""rank_best"": 243, ""rank_worst"": 261}]"
-provisional/SOULCAP:SC000089/Exact	provisional	SOULCAP:SC000089	Exact	"[""CL:0000895""]"	below_top_5	238	238	242	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 238, ""rank_best"": 238, ""rank_worst"": 242}]"
-provisional/SOULCAP:SC000092/Exact	provisional	SOULCAP:SC000092	Exact	"[""CL:0000900""]"	below_top_5	253	242	258	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 2, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 253, ""rank_best"": 242, ""rank_worst"": 258}]"
-provisional/SOULCAP:SC000096/Exact	provisional	SOULCAP:SC000096	Exact	"[""CL:0000905""]"	below_top_5	238	238	247	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 12, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000905"", ""label"": ""effector memory CD4-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 238, ""rank_best"": 238, ""rank_worst"": 247}]"
-provisional/SOULCAP:SC000099/Exact	provisional	SOULCAP:SC000099	Exact	"[""CL:0000913""]"	below_top_5	239	238	247	[]		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 12, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	"[{""cl_id"": ""CL:0000913"", ""label"": ""effector memory CD8-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 239, ""rank_best"": 238, ""rank_worst"": 247}]"
-provisional/SOULCAP:SC000103/Exact	provisional	SOULCAP:SC000103	Exact	"[""CL:4030002""]"	target_not_in_index				"[""CL:4030002""]"		"[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]"	[]
diff --git a/reports/resolver-refinement/pre_refinement_evaluation.json b/reports/resolver-refinement/pre_refinement_evaluation.json
deleted file mode 100644
index 9072702..0000000
--- a/reports/resolver-refinement/pre_refinement_evaluation.json
+++ /dev/null
@@ -1,35723 +0,0 @@
-Warning: truncated output (original token count: 592769)
-... 1322500 bytes omitted ...
-
-{
-  "schema_version": 1,
-  "generated_utc": "2026-09-10T19:46:06.128515+00:00",
-  "inputs": {
-    "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44",
-    "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8",
-    "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e",
-    "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c",
-    "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706",
-    "marker_map": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7",
-    "term_cache": "148b2c3c6c4afce6d35e4d003bb3fbd1c30e2d7bcb43dad4a4a927e38233518d"
-  },
-  "benchmark_path": "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\matcher_benchmark.tsv",
-  "matcher": {
-    "version": "0.1.0",
-    "source_hashes": {
-      "cl_match.py": "1bec5e9d880cfd34574ae55dfde29d4b62c745e9649a9b5d292d5697d848649f",
-      "phenotype.py": "6d3e7e59b884365fa48596fe1365b8630053b70a6259bb0e8f42413a55a9514a",
-      "marker_syntax.py": "e40620b1d804eec3c1f05251716092abd7f5a273e11ba91ce61a3345b1872ade",
-      "registry.py": "a225ca650e0278378566bf7134b3d8daa33dabee0c61c3d479d8affddf7a25fd",
-      "evaluation.py": "ad643e2b29d58e07d3e16b9c8aca15723f160cad346c751597cf52dec9526b25",
-      "audit.py": "86a7f3978446fe1122eec579b5a4c41ea3adf0086b5bcb642c195104e4125d4d",
-      "candidate_index.py": "b8ede03e76d0df09fd8735d1d45178c77a977c6ae40a61c38478bbb4be737ddc"
-    }
-  },
-  "config": {
-    "ks": [
-      1,
-      3,
-      5
-    ],
-    "ranking": "production order, including disqualified candidates",
-    "ties": "primary metrics use production order; bounds report tie sensitivity",
-    "denominator": "all cohort cases, including unscorable profiles and absent targets",
-    "marker_resolution": true,
-    "local_lexical": true,
-    "lexical_limit": 20,
-    "lexical_min_jaccard": 0.5
-  },
-  "candidate_count": 3327,
-  "marker_resolution_issues": [
-    {
-      "marker": "CD1D-A-GALCER",
-      "reason": "multiple_or_missing_protein",
-      "pro_ids": []
-    },
-    {
-      "marker": "CD57",
-      "reason": "multiple_or_missing_protein",
-      "pro_ids": []
-    },
-    {
-      "marker": "HLA-DR",
-      "reason": "complex_or_reagent",
-      "pro_ids": [
-        "PR:000002015"
-      ]
-    },
-    {
-      "marker": "IGA",
-      "reason": "multiple_or_missing_protein",
-      "pro_ids": []
-    },
-    {
-      "marker": "IGD",
-      "reason": "multiple_or_missing_protein",
-      "pro_ids": []
-    },
-    {
-      "marker": "IGE",
-      "reason": "multiple_or_missing_protein",
-      "pro_ids": []
-    },
-    {
-      "marker": "IGG",
-      "reason": "multiple_or_missing_protein",
-      "pro_ids": []
-    },
-    {
-      "marker": "IGM",
-      "reason": "multiple_or_missing_protein",
-      "pro_ids": []
-    },
-    {
-      "marker": "MR1",
-      "reason": "complex_or_reagent",
-      "pro_ids": [
-        "PR:Q95460"
-      ]
-    },
-    {
-      "marker": "TCR",
-      "reason": "multiple_or_missing_protein",
-      "pro_ids": []
-    },
-    {
-      "marker": "TCRAB",
-      "reason": "complex_or_reagent",
-      "pro_ids": []
-    },
-    {
-      "marker": "TCRGD",
-      "reason": "complex_or_reagent",
-      "pro_ids": []
-    },
-    {
-      "marker": "TETRAMER",
-      "reason": "complex_or_reagent",
-      "pro_ids": []
-    },
-    {
-      "marker": "V",
-      "reason": "complex_or_reagent",
-      "pro_ids": []
-    },
-    {
-      "marker": "DELTA",
-      "reason": "complex_or_reagent",
-      "pro_ids": []
-    },
-    {
-      "marker": "DELTA1",
-      "reason": "complex_or_reagent",
-      "pro_ids": []
-    },
-    {
-      "marker": "GAMMA",
-      "reason": "complex_or_reagent",
-      "pro_ids": []
-    },
-    {
-      "marker": "CCR4",
-      "reason": "ambiguous_alias",
-      "owners": [
-        "CCR4",
-        "CD194"
-      ]
-    },
-    {
-      "marker": "CD194",
-      "reason": "ambiguous_alias",
-      "owners": [
-        "CCR4",
-        "CD194"
-      ]
-    },
-    {
-      "marker": "CCR6",
-      "reason": "ambiguous_alias",
-      "owners": [
-        "CCR6",
-        "CD196"
-      ]
-    },
-    {
-      "marker": "CD196",
-      "reason": "ambiguous_alias",
-      "owners": [
-        "CCR6",
-        "CD196"
-      ]
-    },
-    {
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-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "invalid_profile",
-        "after_status": "invalid_profile"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000018/Exact",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "invalid_profile",
-        "after_status": "invalid_profile"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000019/Exact",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "invalid_profile",
-        "after_status": "invalid_profile"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000020/Exact",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "invalid_profile",
-        "after_status": "invalid_profile"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000021/Exact",
-        "change": "unchanged",
-        "before_rank": 9,
-        "after_rank": 9,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000022/Exact",
-        "change": "unchanged",
-        "before_rank": 4,
-        "after_rank": 4,
-        "before_status": "hit_at_5",
-        "after_status": "hit_at_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000023/Exact",
-        "change": "improved",
-        "before_rank": null,
-        "after_rank": 278,
-        "before_status": "target_not_in_index",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000024/Exact",
-        "change": "improved",
-        "before_rank": null,
-        "after_rank": 114,
-        "before_status": "target_not_in_index",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000025/Exact",
-        "change": "unchanged",
-        "before_rank": 3,
-        "after_rank": 3,
-        "before_status": "hit_at_5",
-        "after_status": "hit_at_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000026/Exact",
-        "change": "unchanged",
-        "before_rank": 31,
-        "after_rank": 31,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000028/Broad",
-        "change": "unchanged",
-        "before_rank": 1,
-        "after_rank": 1,
-        "before_status": "hit_at_5",
-        "after_status": "hit_at_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000029/Exact",
-        "change": "unchanged",
-        "before_rank": 43,
-        "after_rank": 43,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000030/Exact",
-        "change": "unchanged",
-        "before_rank": 20,
-        "after_rank": 20,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000031/Exact",
-        "change": "unchanged",
-        "before_rank": 5,
-        "after_rank": 5,
-        "before_status": "hit_at_5",
-        "after_status": "hit_at_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000032/Exact",
-        "change": "unchanged",
-        "before_rank": 5,
-        "after_rank": 5,
-        "before_status": "hit_at_5",
-        "after_status": "hit_at_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000033/Broad",
-        "change": "unchanged",
-        "before_rank": 12,
-        "after_rank": 12,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000034/Broad",
-        "change": "unchanged",
-        "before_rank": 4,
-        "after_rank": 4,
-        "before_status": "hit_at_5",
-        "after_status": "hit_at_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000035/Broad",
-        "change": "unchanged",
-        "before_rank": 5,
-        "after_rank": 5,
-        "before_status": "hit_at_5",
-        "after_status": "hit_at_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000036/Broad",
-        "change": "unchanged",
-        "before_rank": 12,
-        "after_rank": 12,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000037/Exact",
-        "change": "unchanged",
-        "before_rank": 39,
-        "after_rank": 39,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000039/Exact",
-        "change": "unchanged",
-        "before_rank": 13,
-        "after_rank": 13,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000040/Exact",
-        "change": "unchanged",
-        "before_rank": 33,
-        "after_rank": 33,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000041/Exact",
-        "change": "unchanged",
-        "before_rank": 14,
-        "after_rank": 14,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000042/Exact",
-        "change": "unchanged",
-        "before_rank": 18,
-        "after_rank": 18,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000043/Exact",
-        "change": "unchanged",
-        "before_rank": 18,
-        "after_rank": 18,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000044/Exact",
-        "change": "unchanged",
-        "before_rank": 17,
-        "after_rank": 17,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000045/Exact",
-        "change": "improved",
-        "before_rank": null,
-        "after_rank": 171,
-        "before_status": "target_not_in_index",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000046/Broad",
-        "change": "unchanged",
-        "before_rank": 34,
-        "after_rank": 34,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000047/Broad",
-        "change": "unchanged",
-        "before_rank": 42,
-        "after_rank": 42,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000048/Broad",
-        "change": "unchanged",
-        "before_rank": 63,
-        "after_rank": 63,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000049/Broad",
-        "change": "unchanged",
-        "before_rank": 34,
-        "after_rank": 34,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000050/Broad",
-        "change": "unchanged",
-        "before_rank": 70,
-        "after_rank": 70,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000051/Broad",
-        "change": "unchanged",
-        "before_rank": 63,
-        "after_rank": 63,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000052/Broad",
-        "change": "unchanged",
-        "before_rank": 42,
-        "after_rank": 42,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000053/Broad",
-        "change": "unchanged",
-        "before_rank": 54,
-        "after_rank": 54,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000054/Broad",
-        "change": "unchanged",
-        "before_rank": 34,
-        "after_rank": 34,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000055/Broad",
-        "change": "unchanged",
-        "before_rank": 70,
-        "after_rank": 70,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000056/Broad",
-        "change": "unchanged",
-        "before_rank": 63,
-        "after_rank": 63,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000057/Broad",
-        "change": "unchanged",
-        "before_rank": 42,
-        "after_rank": 42,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000058/Broad",
-        "change": "unchanged",
-        "before_rank": 54,
-        "after_rank": 54,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000059/Exact",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "invalid_profile",
-        "after_status": "invalid_profile"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000060/Exact",
-        "change": "improved",
-        "before_rank": null,
-        "after_rank": 171,
-        "before_status": "target_not_in_index",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000061/Exact",
-        "change": "improved",
-        "before_rank": null,
-        "after_rank": 171,
-        "before_status": "target_not_in_index",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000062/Broad",
-        "change": "unchanged",
-        "before_rank": 9,
-        "after_rank": 9,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000063/Broad",
-        "change": "unchanged",
-        "before_rank": 4,
-        "after_rank": 4,
-        "before_status": "hit_at_5",
-        "after_status": "hit_at_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000064/Broad",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "target_not_in_index",
-        "after_status": "target_not_retrieved"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000065/Broad",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "target_not_in_index",
-        "after_status": "target_not_retrieved"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000066/Exact",
-        "change": "unchanged",
-        "before_rank": 9,
-        "after_rank": 9,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000067/Exact",
-        "change": "unchanged",
-        "before_rank": 4,
-        "after_rank": 4,
-        "before_status": "hit_at_5",
-        "after_status": "hit_at_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000068/Broad",
-        "change": "improved",
-        "before_rank": null,
-        "after_rank": 113,
-        "before_status": "target_not_in_index",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000069/Broad",
-        "change": "improved",
-        "before_rank": null,
-        "after_rank": 125,
-        "before_status": "target_not_in_index",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000070/Broad",
-        "change": "improved",
-        "before_rank": null,
-        "after_rank": 134,
-        "before_status": "target_not_in_index",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000071/Broad",
-        "change": "improved",
-        "before_rank": null,
-        "after_rank": 127,
-        "before_status": "target_not_in_index",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000072/Broad",
-        "change": "improved",
-        "before_rank": null,
-        "after_rank": 106,
-        "before_status": "target_not_in_index",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000073/Exact",
-        "change": "unchanged",
-        "before_rank": 1,
-        "after_rank": 1,
-        "before_status": "hit_at_5",
-        "after_status": "hit_at_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000074/Exact",
-        "change": "unchanged",
-        "before_rank": null,
-        "after_rank": null,
-        "before_status": "invalid_profile",
-        "after_status": "invalid_profile"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000082/Exact",
-        "change": "unchanged",
-        "before_rank": 238,
-        "after_rank": 238,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000085/Exact",
-        "change": "unchanged",
-        "before_rank": 239,
-        "after_rank": 239,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000087/Exact",
-        "change": "unchanged",
-        "before_rank": 252,
-        "after_rank": 252,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000089/Exact",
-        "change": "unchanged",
-        "before_rank": 238,
-        "after_rank": 238,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000092/Exact",
-        "change": "unchanged",
-        "before_rank": 253,
-        "after_rank": 253,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000096/Exact",
-        "change": "unchanged",
-        "before_rank": 238,
-        "after_rank": 238,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000099/Exact",
-        "change": "unchanged",
-        "before_rank": 239,
-        "after_rank": 239,
-        "before_status": "below_top_5",
-        "after_status": "below_top_5"
-      },
-      {
-        "case_id": "provisional/SOULCAP:SC000103/Exact",
-        "change": "improved",
-        "before_rank": null,
-        "after_rank": 240,
-        "before_status": "target_not_in_index",
-        "after_status": "below_top_5"
-      }
-    ]
-  }
-}
diff --git a/reports/soulcap_feedback.tsv b/reports/soulcap_feedback.tsv
new file mode 100644
index 0000000..7c5b602
--- /dev/null
+++ b/reports/soulcap_feedback.tsv
@@ -0,0 +1,60 @@
+section	status	subject_id	sheet_row	abbreviation	parent	column	current_string	issue	suggested_fix	fix_source	notes
+0_general_rule	draft					all marker columns	e.g. TCR V delta1-; MR1 Tetramer+; CD1d-a-GalCer Tetramer+; TCR Vb11+	Marker names containing spaces are split into separate markers (a space means AND), e.g. TCR V delta1- becomes TCR, V and delta1-. Some such strings pass the grammar, so they cannot be caught by validation alone.	Write every marker as a single token without spaces, e.g. TCRVd1-, TCRVd2+, TCRVg9+, TCRVb11+, MR1Tetramer+, CD1d-a-GalCer-Tetramer+	MARKER_SYNTAX.md section 3; spellings from reports/proposed_marker_fixes.xlsx	Applies to every row, including new ones. Rows found so far: 60, 75-80, 108, 110-115, 123-128.
+a_syntax_error	draft	SOULCAP:SC000017	18	Mono		Required exclusion	CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)	unexpected ')' in group			Unbalanced brackets in '([CD123hi|CD193-)'; the intended grouping is unclear (possibly '([CD123hi]-|CD193-)'). Needs SOULCAP to confirm.
+a_syntax_error	draft	SOULCAP:SC000018	19	CMo	Mono	Required exclusion	CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)	unexpected ')' in group			Unbalanced brackets in '([CD123hi|CD193-)'; the intended grouping is unclear (possibly '([CD123hi]-|CD193-)'). Needs SOULCAP to confirm.
+a_syntax_error	draft	SOULCAP:SC000019	20	NCMo	Mono	Required exclusion	CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)	unexpected ')' in group			Unbalanced brackets in '([CD123hi|CD193-)'; the intended grouping is unclear (possibly '([CD123hi]-|CD193-)'). Needs SOULCAP to confirm.
+a_syntax_error	draft	SOULCAP:SC000020	21	IntMo	Mono	Required exclusion	CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)	unexpected ')' in group			Unbalanced brackets in '([CD123hi|CD193-)'; the intended grouping is unclear (possibly '([CD123hi]-|CD193-)'). Needs SOULCAP to confirm.
+a_syntax_error	draft	SOULCAP:SC000059	60	iNKT	T cell	Required phenotypic markers	CD45+ CD3+ (TCRab+|TCRgd-) (TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCR Vb11+	mixed '|' and space in a group	CD45+ CD3+ (TCRab+|TCRgd-) (TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer-Tetramer+) TCRVb11+	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000074	75	MAIT	T Lymph	Required phenotypic markers	CD45+ CD3+ (TCRab+|TCRgd-) (TCRVa7.2+|MR1 Tetramer+) CD161+	mixed '|' and space in a group	CD45+ CD3+ (TCRab+|TCRgd-) (TCRVa7.2+|MR1Tetramer+) CD161+	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000075	76	Conv TCRab	T Lymph	Required phenotypic markers	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1 Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCR Vb11+]-	mixed '|' and space in a group	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer-Tetramer+) TCRVb11+]-	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000076	77	CD4+ Conv TCRab	ConT TCRab	Required phenotypic markers	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1 Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRva24+|CD1d-a-GalCer Tetramer+) TCR VB11+]- CD4+ CD8-	mixed '|' and space in a group	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer-Tetramer+) TCRVb11+]- CD4+ CD8-	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000077	78	CD8+ Conv TCRab	ConT TCRab	Required phenotypic markers	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1 Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCR Vb11+]- CD4- CD8+	mixed '|' and space in a group	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer-Tetramer+) TCRVb11+]- CD4- CD8+	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000078	79	CD4+/CD8+ Conv TCRab	ConT TCRab	Required phenotypic markers	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1 Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRva24+|CD1d-a-GalCer Tetramer+) TCR VB11+]- CD4+ CD8+	mixed '|' and space in a group	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer-Tetramer+) TCRVb11+]- CD4+ CD8+	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000079	80	CD4-/CD8- Conv TCRab	ConT TCRab	Required phenotypic markers	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1 Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCR Vb11+]- CD4- CD8-	mixed '|' and space in a group	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa7.2+|MR1Tetramer+) CD161+]- [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer-Tetramer+) TCRVb11+]- CD4- CD8-	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000107	108	T helper	TCRab	Required phenotypic markers	CD45+ CD3+ (TCRab+|TCRgd-)  (TCRVa24-Ja18|TCRVa24|CD1d-a-GalCer Tetramer) TCRVb11 (TCRVa7.2|MR1 Tetramer) CD161 CD4 CD8 (CD183|CXCR3) (CD185|CXCR5) (CD194|CCR4) (CD196|CCR6)	mixed '|' and space in a group			proposed_marker_fixes.xlsx suggests 'CD45+ CD3+ (TCRab+|TCRgd-) (TCRVa24-Ja18|TCRVa24|CD1d-a-GalCer-Tetramer) TCRVb11 (TCRVa7.2|MR1Tetramer) CD161 CD4 CD8 CD183/CXCR3 CD185/CXCR5 CD194/CCR4 CD196/CCR6', but it still fails the grammar (invalid marker token 'CD183/CXCR3'). Most markers here have no +/- qualifier, so the cell reads as a panel list, not a phenotype definition. Needs SOULCAP to state the intended phenotype.
+a_syntax_error	draft	SOULCAP:SC000109	110	ConT Treg-like	CD4 ConT	Required phenotypic markers	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]- CD4+ CD25+ CD127lo/-	mixed '|' and space in a group	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer-Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1Tetramer+) CD161+]- CD4+ CD25+ CD127lo/-	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000110	111	ConT Tfh-like	CD4 ConT	Required phenotypic markers	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]-  CD4+ [CD25+ CD127lo/-]- CD185+	mixed '|' and space in a group	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer-Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1Tetramer+) CD161+]- CD4+ [CD25+ CD127lo/-]- CD185+	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000111	112	Th1-like	CD4 ConT	Required phenotypic markers	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]-  CD4+ [CD25+ CD127lo/-]- CD185- CD183+ CD196- CD194-	mixed '|' and space in a group	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer-Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1Tetramer+) CD161+]- CD4+ [CD25+ CD127lo/-]- CD185- CD183+ CD196- CD194-	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000112	113	Th2-like	CD4 ConT	Required phenotypic markers	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]-  CD4+ [CD25+ CD127lo/-]- CD185- CD183- CD196- CD194+ CD294+	mixed '|' and space in a group	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer-Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1Tetramer+) CD161+]- CD4+ [CD25+ CD127lo/-]- CD185- CD183- CD196- CD194+ CD294+	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000113	114	Th9-like		Required phenotypic markers	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]-  CD4+ [CD25+ CD127lo/-]- CD185- CD183- CD196- CD194+	mixed '|' and space in a group	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer-Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1Tetramer+) CD161+]-  CD4+ [CD25+ CD127lo/-]- CD185- CD183- CD196- CD194+	this repo (same edit proposed_marker_fixes.xlsx makes for sibling rows 110-115)	Row missing from proposed_marker_fixes.xlsx; only the two spaced reagent names are changed.
+a_syntax_error	draft	SOULCAP:SC000114	115	Th17-like	CD4 ConT	Required phenotypic markers	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1 Tetramer+) CD161+]- CD4+ [CD25+ CD127lo/-]- CD185- CD183- CD196+ CD194+/-	mixed '|' and space in a group	CD45+ CD3+ (TCRab+|TCRgd-) [(TCRVa24-Ja18+|TCRVa24+|CD1d-a-GalCer-Tetramer+) TCRVb11+]- [(TCRVa7.2+|MR1Tetramer+) CD161+]- CD4+ [CD25+ CD127lo/-]- CD185- CD183- CD196+ CD194+/-	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000122	123	Vg9 Vd2	TCRgd	Ideal phenotypic markers	TCR V delta1-	parses without error but splits into separate markers TCR / V / delta1 (spaces inside a marker name)	TCRVd1-	this repo (same TCRVd1 spelling proposed_marker_fixes.xlsx uses for rows 124-128)	Not caught by the grammar validator; found by tracing the V / delta1 tokens.
+a_syntax_error	draft	SOULCAP:SC000123	124	Vd2	TCRgd	Ideal phenotypic markers	TCR V delta1-	parses without error but splits into separate markers TCR / V / delta1 (spaces inside a marker name)	TCRVd1-	this repo (same TCRVd1 spelling proposed_marker_fixes.xlsx uses for rows 124-128)	Not caught by the grammar validator; found by tracing the V / delta1 tokens.
+a_syntax_error	draft	SOULCAP:SC000123	124	Vd2	TCRgd	Required phenotypic markers	CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 2+ TCR V gamma 9- TCR Vd1-	invalid marker token '2+'	CD45+ CD3+ (TCRab-|TCRgd+) TCRVd2+ TCRVg9- TCRVd1-	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000124	125	Vd3	TCRgd	Ideal phenotypic markers	TCR V gamma 9+/-	invalid marker token '9+/-'	TCRVg9+/-	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000124	125	Vd3	TCRgd	Required phenotypic markers	CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 1- TCR V delta 2- TCR V gamma 9-	invalid marker token '1-'	CD45+ CD3+ (TCRab-|TCRgd+) TCRVd1- TCRVd2- TCRVg9-	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000125	126	Vg9 Vd1		Required phenotypic markers	CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 1+ TCR V delta 2- TCR V gamma 9+	invalid marker token '1+'	CD45+ CD3+ (TCRab-|TCRgd+) TCRVd1+ TCRVd2- TCRVg9+	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000126	127	Vd1	TCRgd	Ideal phenotypic markers	TCR V delta 2- TCR V gamma 9+/-	invalid marker token '2-'	TCRVd2- TCRVg9+/-	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000126	127	Vd1	TCRgd	Required phenotypic markers	CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 1+ TCR V delta 2- TCR V gamma 9+/-	invalid marker token '1+'	CD45+ CD3+ (TCRab-|TCRgd+) TCRVd1+ TCRVd2- TCRVg9+/-	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000127	128	Vg9	TCRgd	Ideal phenotypic markers	TCR V delta 1- TCR V delta 2-	invalid marker token '1-'	TCRVd1- TCRVd2-	reports/proposed_marker_fixes.xlsx	
+a_syntax_error	draft	SOULCAP:SC000127	128	Vg9	TCRgd	Required phenotypic markers	CD45+ CD3+ (TCRab-|TCRgd+) TCR V delta 1- TCR V delta 2- TCR V gamma 9+	invalid marker token '1-'	CD45+ CD3+ (TCRab-|TCRgd+) TCRVd1- TCRVd2- TCRVg9+	reports/proposed_marker_fixes.xlsx	
+b_empty_required_phenotypic	draft	SOULCAP:SC000027	28	Transitional		Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. No Parent recorded.
+b_empty_required_phenotypic	draft	SOULCAP:SC000080	81	Tcm	T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000081	82	CD4+ Tcm	CD4+ T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000082	83	CD4+ TCRab Tcm	CD4+ TCRab T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000083	84	CD4+ TCRgd Tcm	CD4+ TCRgd T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000084	85	CD8+ Tcm	CD8+ T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000085	86	CD8+ TCRab Tcm	CD8+ TCRab T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000086	87	CD8+ TCRgd Tcm	CD8+ TCRgd T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000087	88	Tnaive	T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000088	89	CD4+ Tnaive	CD4+ T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000089	90	CD4+ TCRab Tnaive	CD4 TCRab T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent 'CD4 TCRab T cell' does not exactly match any Abbreviation in the sheet.
+b_empty_required_phenotypic	draft	SOULCAP:SC000090	91	CD4+ TCRgd Tnaive	CD4+ TCRgd T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000091	92	CD8+ Tnaive	CD8+ T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000092	93	CD8+ TCRab Tnaive	CD8+ TCRab T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000093	94	CD8+ TCRgd Tnaive	CD8+ TCRgd T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000094	95	Tem	T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000095	96	CD4+ Tem	CD4+ T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000096	97	CD4+ TCRab Tem	CD4+ TCRab T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000097	98	CD4+ TCRgd Tem	CD4+ TCRgd T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000098	99	CD8+ Tem	CD8+ T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000099	100	CD8+ TCRab Tem	CD8+ TCRab T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000100	101	CD8+ TCRgd Tem	CD8+ TCRgd T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000101	102	Temra	T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000102	103	CD4+ Temra	CD4+ T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000103	104	CD4+ TCRab Temra	CD4 TCRab T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent 'CD4 TCRab T cell' does not exactly match any Abbreviation in the sheet.
+b_empty_required_phenotypic	draft	SOULCAP:SC000104	105	CD4+ TCRgd Temra	CD4+ TCRgd T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000105	106	CD8+ Temra	CD8+ T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000106	107	CD8+ TCRab Temra	CD8+ TCRab T cell	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000108	109	T cytotoxic	TCRab	Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. Parent matches an existing Abbreviation.
+b_empty_required_phenotypic	draft	SOULCAP:SC000120	121	Tfh		Required phenotypic markers		Required phenotypic markers is empty; the row can only be defined through its parent gate			Please add the defining markers for this cell type, or confirm it should inherit its parent's markers. No Parent recorded.
diff --git a/src/README.md b/src/README.md
new file mode 100644
index 0000000..f9d5105
--- /dev/null
+++ b/src/README.md
@@ -0,0 +1,35 @@
+# src/
+
+All Python code, in the package `soulcap_cl_mapping`. Command-line entry points
+are declared in [pyproject.toml](../pyproject.toml) and run with
+`uv run <command>`. Tests live in `tests/` (one `test_<module>.py` per module)
+and must keep coverage at or above 80%.
+
+## Modules by pipeline stage
+
+| Stage | Module | Command |
+|---|---|---|
+| Source data | `sync_sheets.py` | `soulcap-sync` |
+| Marker grammar | `marker_syntax.py` (parser, validator, token extraction) | `soulcap-validate`, `soulcap-tokens` |
+| | `phenotype.py` (evaluates parsed marker expressions against evidence) | library |
+| Token → protein | `marker_map.py` | `soulcap-map` |
+| | `hgnc_map.py` | `soulcap-hgnc` |
+| | `marker_resolution.py` (per-token allow/withhold policies) | library |
+| CL reference data | `cl_pro.py` (CL→PRO axioms from Ubergraph) | `soulcap-cl-pro` |
+| | `candidate_index.py` (alias/protein resolution, lexical cache) | `soulcap-cache-terms` |
+| Matching | `cl_match.py` | `soulcap-match` |
+| | `oak_match.py`, `ols4_lookup.py` | `soulcap-oak-match`, `soulcap-lookup` |
+| Mapping decisions | `registry.py` (entity IDs, curated decisions) | library |
+| | `mapping_evidence.py` (marker evidence per mapping) | library |
+| | `mapping_export.py`, `sssom_export.py` (entry point) | `soulcap-sssom` |
+| Audit and evaluation | `audit.py` + `audit_dashboard.html` (template) | `soulcap-audit` |
+| | `evaluation.py` | `soulcap-evaluate` |
+| | `resolution_audit.py` | `soulcap-resolution-audit` |
+| | `resolved_types.py` (cell types whose markers all resolve to PRO) | `soulcap-resolved` |
+| | `regression_triage.py` | `uv run python -m soulcap_cl_mapping.regression_triage` |
+| Literature | `europepmc_search.py`, `pubmed_search.py` | `soulcap-europepmc`, `soulcap-pubmed` |
+| | `snippet_cache.py`, `report_validator.py` (citation-traversal support) | `soulcap-cache`, `soulcap-validate-report` |
+| | `pro_species_support.py` (used by the `pro-marker-species-support` skill) | library |
+| | `literature_evidence.py` (evidence table: migrate, verify against Europe PMC, views) | `soulcap-evidence` |
+
+See [docs/pipeline.md](../docs/pipeline.md) for how the stages connect.
diff --git a/src/soulcap_cl_mapping/audit.py b/src/soulcap_cl_mapping/audit.py
index 7f4b992..27224d5 100644
--- a/src/soulcap_cl_mapping/audit.py
+++ b/src/soulcap_cl_mapping/audit.py
@@ -694,7 +694,7 @@ def add_links(data: dict, root: Path, out: Path) -> None:
             if not isinstance(value, str):
                 continue
             for reference in re.findall(
-                r"https?://[^\s;<>\"]+|(?:reports|marker_mappings|data|mappings)/[^\s;<>\"]+",
+                r"https?://[^\s;<>\"]+|(?:reports|marker_mappings|data|mappings|literature|archive)/[^\s;<>\"]+",
                 value,
             ):
                 parsed = urlsplit(reference)
diff --git a/src/soulcap_cl_mapping/literature_evidence.py b/src/soulcap_cl_mapping/literature_evidence.py
new file mode 100644
index 0000000..399e892
--- /dev/null
+++ b/src/soulcap_cl_mapping/literature_evidence.py
@@ -0,0 +1,701 @@
+"""Structured literature evidence: one row per (cell type, marker, quote).
+
+Three steps, each a subcommand of ``soulcap-evidence``:
+
+- ``migrate``: parse narrative Milestone 2 files (``*_markers.md``; the originals
+  are archived in ``archive/2026-09_literature_narratives/``) into
+  ``literature/evidence.tsv``. Quotes are copied exactly as written; any
+  quote whose marker or citation cannot be determined mechanically goes to
+  ``literature/evidence_unplaced.tsv`` instead of being guessed.
+- ``verify``: check each quote against the open-access full text in Europe PMC.
+  ``verified`` becomes ``yes`` only for an exact match (whitespace collapsed,
+  Markdown emphasis removed). Near-matches and mismatches stay ``no`` and are
+  flagged in ``verification_note``; quotes are never reworded.
+- ``views``: write read-only Markdown views per cell type and per marker.
+
+Cell-type assignment is family-level (the family each narrative file covers).
+Assigning a row to one SOULCAP ``subject_id`` is left to a curator.
+"""
+
+from __future__ import annotations
+
+import argparse
+import csv
+import json
+import re
+import sys
+import time
+import urllib.parse
+import urllib.request
+import xml.etree.ElementTree as ET
+from collections.abc import Callable
+from datetime import date
+from pathlib import Path
+
+from soulcap_cl_mapping.marker_syntax import MARKER_COLUMNS
+from soulcap_cl_mapping.report_validator import _normalise_for_match
+
+ROOT = Path(__file__).resolve().parents[2]
+LITERATURE = ROOT / "literature"
+EVIDENCE = LITERATURE / "evidence.tsv"
+UNPLACED = LITERATURE / "evidence_unplaced.tsv"
+EPMC = "https://www.ebi.ac.uk/europepmc/webservices/rest"
+
+# Family each narrative file covers, keyed by file name (and "Part" heading for
+# the combined gamma-delta / MAIT file).
+FAMILIES = {
+    "b_cell_markers.md": "B cell",
+    "dc_markers.md": "dendritic cell",
+    "gdt_mait_markers.md": "gamma-delta T cell",
+    "ilc_markers.md": "innate lymphoid cell",
+    "inkt_markers.md": "iNKT cell",
+    "nk_cell_markers.md": "NK cell",
+    "t_cell_markers.md": "T cell",
+}
+PART_FAMILIES = {"Part II": "MAIT cell", "Part I": "gamma-delta T cell"}
+# Files whose quotes were extracted with an AI web-fetch tool and start as
+# unverified until checked against the full text.
+WEBFETCH_FILES = {"ilc_markers.md", "t_cell_markers.md"}
+# verified status for quotes that match exactly except a final "." (or ,;:).
+TRAILING = "exact_except_trailing_punctuation"
+VERIFIED_VALUES = {"yes", TRAILING, "no", "not_checked"}
+
+FIELDS = [
+    "evidence_id",
+    "subject_id",
+    "candidate_subject_ids",
+    "candidate_status",
+    "cell_type_label",
+    "marker_token",
+    "level",
+    "supports_or_contradicts",
+    "quote",
+    "pmid",
+    "doi",
+    "pmcid",
+    "first_author_year",
+    "species",
+    "tissue",
+    "source_type",
+    "source_type_basis",
+    "source_file",
+    "source_line",
+    "section",
+    "notes",
+    "verified",
+    "verification_note",
+    "superseded_by",
+    "added_on",
+]
+# Rows removed from evidence.tsv (e.g. the extraction added text not in the
+# paper) are logged here with the reason; they are never silently deleted.
+REMOVED_FIELDS = ["removed_on", "reason", *FIELDS]
+# Candidate cell types: which SOULCAP rows belong to each family. Membership
+# follows each row's Parent chain to its root (a dangling parent name counts as
+# the root). This is a mechanical, UNREVIEWED rule; a curator confirms each
+# candidate before setting subject_id.
+FAMILY_ROOTS = {
+    "NK cell": {"NK"},
+    "innate lymphoid cell": {"ILC", "ILCp"},
+    "dendritic cell": {"cDC", "pDC", "DCM"},
+    "B cell": {"B cell", "ASC", "Transitional", "T1/T2 B", "Mature B", "Bmem"},
+    "T cell": {
+        "T cell",
+        "T Lymph",
+        "ConT TCRab",
+        "CD4 TCRab T cell",
+        "CD4 ConT",
+        "CD4/CD8 PanT",
+        "Th1-like",
+        "Th2-like",
+        "Th9-like",
+        "Th17-like",
+        "Tfh",
+        "Vg9 Vd1",
+    },
+}
+# Subfamilies of the T cell family.
+SUBFAMILY_RULES: dict[str, Callable[[dict], bool]] = {
+    "gamma-delta T cell": lambda r: "TCRgd+" in r["Required phenotypic markers"],
+    "MAIT cell": lambda r: r["Abbreviation"].strip() == "MAIT",
+    "iNKT cell": lambda r: r["Abbreviation"].strip() == "iNKT",
+}
+GREEK = str.maketrans({"α": "a", "β": "b", "γ": "g", "δ": "d"})
+
+UNPLACED_FIELDS = [
+    "source_file",
+    "source_line",
+    "section",
+    "reason",
+    "quote",
+    "citation",
+]
+
+MARKER_WORD = re.compile(
+    r"^(CD\d+\w*|HLA-DR|TCR\S*|Ig[ADEGM]|CCR\d+|CXCR\d+|FceR1a|MR1|CD1d\S*)", re.I
+)
+PMID = re.compile(r"PMID:?\s*(\d+)")
+DOI = re.compile(r"DOI:?\s*(10\.\S+?)(?=[;)\s]|$)")
+PMCID = re.compile(r"(PMC\d+)")
+
+
+def bare(name: str) -> str:
+    """Marker name without an expression qualifier: ``CD56bright`` → ``CD56``."""
+    name = name.strip()
+    # A qualifier only counts at the end of the name (or before a space or
+    # "/"), so "CD1d-α-GalCer Tetramer" keeps its hyphens.
+    match = re.match(r"^(CD\d+[a-z]?)(?:\+|-|−|bright|dim|lo|hi|int)+(?=$|[\s/])", name)
+    return match.group(1) if match else name
+
+
+def heading_markers(heading: str) -> list[list[str]]:
+    """Markers named in a ``###`` heading, each as a list of aliases.
+
+    ``CD11c / ITGAX (…)`` → [["CD11c", "ITGAX"]]; ``CD19 and CD20 (…)`` →
+    [["CD19"], ["CD20"]]. If the text before the parenthesis names no marker,
+    the parenthesis is used (``Lineage exclusion markers (CD14, CD33)``).
+    """
+    title = heading.lstrip("#").strip()
+    head, _, paren = title.partition("(")
+    for text in (head, paren.rstrip(")")):
+        groups = []
+        for part in re.split(r",|\band\b|\bvs\.?\b|&", text):
+            aliases = [bare(a) for a in part.split("/") if a.strip()]
+            # The first name must look like a marker; later aliases (ITGAX,
+            # NCAM, Syndecan-1) are kept for matching quote text.
+            if aliases and MARKER_WORD.match(aliases[0]):
+                groups.append(aliases)
+        if groups:
+            return groups
+    return []
+
+
+def mentions(quote: str, aliases: list[str]) -> bool:
+    text = quote.lower()
+    return any(
+        re.search(r"(?<![a-z0-9])" + re.escape(a.lower()) + r"(?![0-9])", text)
+        for a in aliases
+    )
+
+
+def parse_citation(line: str) -> dict:
+    text = line.lstrip("—–- ").strip()
+    pmid, doi, pmcid = PMID.search(text), DOI.search(text), PMCID.search(text)
+    return {
+        "first_author_year": text.split("(")[0].strip().rstrip(","),
+        "pmid": pmid.group(1) if pmid else "",
+        "doi": doi.group(1).rstrip(".") if doi else "",
+        "pmcid": pmcid.group(1) if pmcid else "",
+        "citation": text,
+    }
+
+
+def split_blockquote(text: str) -> tuple[str, str]:
+    """Separate the quoted text from a trailing ``[note]`` annotation."""
+    match = re.match(r'^(.*")\s*(?:\\?\[(.*?)\\?\])?\s*$', text)
+    if match:
+        return match.group(1).strip(), (match.group(2) or "").strip()
+    return text.strip(), ""
+
+
+def parse_file(path: Path) -> tuple[list[dict], list[dict]]:
+    """Return (evidence rows, unplaced rows) for one narrative file."""
+    lines = path.read_text(encoding="utf-8").splitlines()
+    family = FAMILIES[path.name]
+    rows: list[dict] = []
+    unplaced: list[dict] = []
+    section, markers, in_evidence, discrepancy = "", [], False, False
+    pending: list[dict] = []
+    block: list[str] = []
+    block_start = 0
+
+    def flush_block() -> None:
+        nonlocal block
+        if block:
+            quote, note = split_blockquote(" ".join(block))
+            pending.append(
+                dict(quote=quote, note=note, line=block_start, qualifies=discrepancy)
+            )
+            block = []
+
+    def drop_pending(reason: str) -> None:
+        for p in pending:
+            unplaced.append(
+                dict(
+                    source_file=path.name,
+                    source_line=p["line"],
+                    section=section,
+                    reason=reason,
+                    quote=p["quote"],
+                    citation="",
+                )
+            )
+        pending.clear()
+
+    for number, line in enumerate(lines, start=1):
+        if line.startswith(">"):
+            if not block:
+                block_start = number
+            block.append(line[1:].strip())
+            continue
+        flush_block()
+        stripped = line.strip()
+        if line.startswith("#"):
+            drop_pending("no attribution line before the next heading")
+            level = len(line) - len(line.lstrip("#"))
+            title = line.lstrip("#").strip()
+            if level == 2:
+                in_evidence = not title.lower().startswith(
+                    ("markers with no", "paywalled", "sources")
+                )
+                for part, fam in PART_FAMILIES.items():
+                    if title.startswith(part):
+                        family = fam
+                        break
+            if level == 3:
+                section, markers = title, heading_markers(line)
+            discrepancy = False
+            continue
+        if stripped.startswith("**Discrepancy"):
+            discrepancy = True
+        if stripped.startswith(("— ", "– ")) and pending:
+            cite = parse_citation(stripped)
+            for p in pending:
+                emit(
+                    path, family, section, markers, in_evidence, p, cite, rows, unplaced
+                )
+            pending.clear()
+    flush_block()
+    drop_pending("no attribution line before end of file")
+    return rows, unplaced
+
+
+def emit(
+    path: Path,
+    family: str,
+    section: str,
+    markers: list[list[str]],
+    in_evidence: bool,
+    p: dict,
+    cite: dict,
+    rows: list[dict],
+    unplaced: list[dict],
+) -> None:
+    base = dict(
+        source_file=path.name, source_line=p["line"], section=section, quote=p["quote"]
+    )
+    if not in_evidence:
+        unplaced.append(
+            dict(
+                base,
+                reason="quote outside a 'Markers with evidence' part",
+                citation=cite["citation"],
+            )
+        )
+        return
+    if not (cite["pmid"] or cite["doi"] or cite["pmcid"]):
+        unplaced.append(
+            dict(
+                base,
+                reason="citation has no PMID, DOI or PMCID",
+                citation=cite["citation"],
+            )
+        )
+        return
+    if len(markers) == 1:
+        chosen = markers
+    else:
+        chosen = [m for m in markers if mentions(p["quote"], m)]
+    if not chosen:
+        reason = (
+            "section heading names no marker"
+            if not markers
+            else "section names several markers and the quote mentions none of them"
+        )
+        unplaced.append(dict(base, reason=reason, citation=cite["citation"]))
+        return
+    for aliases in chosen:
+        rows.append(
+            dict(
+                subject_id="",
+                cell_type_label=family,
+                marker_token=aliases[0],
+                level="",
+                supports_or_contradicts="qualifies" if p["qualifies"] else "supports",
+                quote=p["quote"],
+                pmid=cite["pmid"],
+                doi=cite["doi"],
+                pmcid=cite["pmcid"],
+                first_author_year=cite["first_author_year"],
+                species="",
+                tissue="",
+                source_type="not_classified",
+                source_file=rel(path),
+                source_line=p["line"],
+                section=section,
+                notes=p["note"],
+                verified="no" if path.name in WEBFETCH_FILES else "not_checked",
+                verification_note=(
+                    "extracted with WebFetch; not yet checked"
+                    if path.name in WEBFETCH_FILES
+                    else ""
+                ),
+                added_on=date.today().isoformat(),
+            )
+        )
+
+
+def rel(path: Path) -> str:
+    """Repository-relative path when possible (for the source_file column)."""
+    try:
+        return path.resolve().relative_to(ROOT).as_posix()
+    except ValueError:
+        return f"literature/{path.name}"
+
+
+def migrate(files: list[Path]) -> tuple[list[dict], list[dict]]:
+    rows, unplaced = [], []
+    for path in sorted(files):
+        r, u = parse_file(path)
+        rows += r
+        unplaced += u
+    for n, row in enumerate(rows, start=1):
+        row["evidence_id"] = f"EV{n:05d}"
+    return rows, unplaced
+
+
+# --------------------------------------------------------------------------- #
+# Candidate cell types
+# --------------------------------------------------------------------------- #
+def root_of(row: dict, by_abbrev: dict[str, dict]) -> str:
+    seen: set[str] = set()
+    while True:
+        parent = str(row["Parent"]).strip()
+        if not parent or parent in seen:
+            return str(row["Abbreviation"].strip())
+        if parent not in by_abbrev:
+            return parent  # dangling parent name stands in for the root
+        seen.add(parent)
+        row = by_abbrev[parent]
+
+
+def families(profiles: dict[str, dict]) -> dict[str, set[str]]:
+    """Family label -> SOULCAP subject IDs, by the unreviewed root rule."""
+    by_abbrev: dict[str, dict] = {}
+    for row in profiles.values():
+        by_abbrev.setdefault(row["Abbreviation"].strip(), row)
+    result: dict[str, set[str]] = {f: set() for f in [*FAMILY_ROOTS, *SUBFAMILY_RULES]}
+    for sid, row in profiles.items():
+        root = root_of(row, by_abbrev)
+        for family, roots in FAMILY_ROOTS.items():
+            if root in roots:
+                result[family].add(sid)
+        if sid in result["T cell"]:
+            for family, rule in SUBFAMILY_RULES.items():
+                if rule(row):
+                    result[family].add(sid)
+    return result
+
+
+def uses_marker(profile: dict, marker: str) -> bool:
+    """Whether any marker column names ``marker`` (spaces and Greek normalized)."""
+    norm = lambda s: re.sub(r"\s+", "", s.translate(GREEK)).upper()  # noqa: E731
+    target = re.escape(norm(marker))
+    pattern = re.compile(
+        rf"(?<![A-Z0-9]){target}(?=(?:HI|LO|INT|BRIGHT|DIM)?(?:[^A-Z0-9]|$))"
+    )
+    return any(
+        pattern.search(norm(str(profile.get(c, "") or ""))) for c in MARKER_COLUMNS
+    )
+
+
+def add_candidates(rows: list[dict], profiles: dict[str, dict]) -> None:
+    members = families(profiles)
+    for row in rows:
+        ids = sorted(
+            sid
+            for sid in members.get(row["cell_type_label"], set())
+            if uses_marker(profiles[sid], row["marker_token"])
+        )
+        row["candidate_subject_ids"] = "|".join(ids)
+        row["candidate_status"] = "unreviewed" if ids else "none_found"
+
+
+# --------------------------------------------------------------------------- #
+# Verification against Europe PMC full text
+# --------------------------------------------------------------------------- #
+def fragments(quote: str) -> list[str]:
+    """Quoted spans in a blockquote, split at ellipses, emphasis removed."""
+    spans = re.findall(r'"([^"]+)"', quote) or [quote.strip('"')]
+    parts = []
+    for span in spans:
+        # Markdown bold/italic markers only; a literal "(*)" stays.
+        span = re.sub(r"\*\*|__", "", span)
+        span = re.sub(r"\*(?=\S)([^*]*?\S)\*", r"\1", span)
+        parts += [s.strip() for s in re.split(r"\.{3}|…", span) if s.strip()]
+    return parts
+
+
+def squash(text: str) -> str:
+    return re.sub(r"\s+", " ", text).strip()
+
+
+def check_quote(quote: str, full_text: str) -> tuple[str, str]:
+    """Return (verified, note): exact, near-match, or mismatch."""
+    exact, near = squash(full_text), _normalise_for_match(full_text)
+    missing = [f for f in fragments(quote) if squash(f) not in exact]
+    if not missing:
+        return "yes", "exact match in Europe PMC full text"
+    trimmed = [squash(f).rstrip(".,;:") for f in missing]
+    if all(t and t in exact for t in trimmed):
+        return (
+            TRAILING,
+            "exact apart from trailing punctuation (the paper likely has a reference "
+            "marker or different ending there): " + " | ".join(missing),
+        )
+    if all(_normalise_for_match(f) in near for f in missing):
+        return (
+            "no",
+            "near-match only (differs in case, dashes or quote characters): "
+            + " | ".join(missing),
+        )
+    return "no", "not found in Europe PMC full text: " + " | ".join(
+        f"{squash(f)} [first {n} of {len(squash(f))} chars match; then: "
+        f"'{squash(f)[n : n + 30]}']"
+        for f in missing
+        for n in [matching_prefix(squash(f), exact)]
+    )
+
+
+def matching_prefix(fragment: str, text: str) -> int:
+    """Length of the longest prefix of ``fragment`` found in ``text``."""
+    low, high = 0, len(fragment)
+    while low < high:
+        mid = (low + high + 1) // 2
+        if fragment[:mid] in text:
+            low = mid
+        else:
+            high = mid - 1
+    return low
+
+
+def http_get(url: str, attempts: int = 3) -> bytes:
+    """GET with retries: Europe PMC occasionally drops a request."""
+    request = urllib.request.Request(url, headers={"User-Agent": "soulcap-evidence"})
+    for attempt in range(attempts):
+        try:
+            with urllib.request.urlopen(request, timeout=60) as response:
+                body: bytes = response.read()
+            return body
+        except OSError:
+            if attempt == attempts - 1:
+                raise
+            time.sleep(2 * (attempt + 1))
+    raise OSError(url)  # pragma: no cover
+
+
+def resolve_pmcid(row: dict, get: Callable[[str], bytes]) -> str:
+    if row["pmcid"]:
+        return str(row["pmcid"])
+    query = (
+        f"EXT_ID:{row['pmid']} AND SRC:MED" if row["pmid"] else f'DOI:"{row["doi"]}"'
+    )
+    url = f"{EPMC}/search?query={urllib.parse.quote(query)}&format=json&resultType=lite"
+    results = json.loads(get(url))["resultList"]["result"]
+    return (results[0].get("pmcid") or "") if results else ""
+
+
+def full_text(pmcid: str, get: Callable[[str], bytes]) -> str:
+    try:
+        root = ET.fromstring(get(f"{EPMC}/{pmcid}/fullTextXML"))
+    except (ET.ParseError, OSError):
+        return ""
+    # Join text *inside* each block without spaces, so inline markup such as
+    # CD38<sup>+++</sup> reads "CD38+++"; separate blocks with a space.
+    blocks = {"p", "title", "label", "caption", "td", "th", "article-title"}
+    parts = ["".join(e.itertext()) for e in root.iter() if e.tag in blocks]
+    rows = [" ".join("".join(td.itertext()) for td in tr) for tr in root.iter("tr")]
+    return " ".join(parts + rows)
+
+
+def verify(rows: list[dict], get: Callable[[str], bytes] = http_get) -> None:
+    """Update ``verified`` / ``verification_note`` in place."""
+    texts: dict[str, str] = {}
+    for row in rows:
+        if row["verified"] in ("yes", TRAILING):
+            continue
+        try:
+            pmcid = resolve_pmcid(row, get)
+        except (OSError, ValueError, KeyError):
+            row["verification_note"] = "Europe PMC lookup failed; not checked"
+            continue
+        if not pmcid:
+            row["verification_note"] = (
+                "no open-access full text in Europe PMC; not checked"
+            )
+            continue
+        if pmcid not in texts:
+            texts[pmcid] = full_text(pmcid, get)
+        if not texts[pmcid]:
+            # Keep an earlier check result rather than overwrite it after a
+            # failed or empty fetch.
+            if not row["verification_note"].startswith(("not found", "near-match")):
+                row["verification_note"] = (
+                    f"{pmcid}: full text not available; not checked"
+                )
+            continue
+        row["pmcid"] = pmcid
+        row["verified"], row["verification_note"] = check_quote(
+            row["quote"], texts[pmcid]
+        )
+
+
+# --------------------------------------------------------------------------- #
+# Views
+# --------------------------------------------------------------------------- #
+def slug(text: str) -> str:
+    return re.sub(r"[^a-z0-9]+", "-", text.lower()).strip("-") or "unnamed"
+
+
+def render_view(
+    title: str, rows: list[dict], group_by: str, labels: dict[str, str] | None = None
+) -> str:
+    lines = [
+        f"# {title}",
+        "",
+        "Generated from `literature/evidence.tsv` by `uv run soulcap-evidence views`.",
+        "Do not edit by hand.",
+        "",
+    ]
+    for key in sorted({r[group_by] for r in rows}):
+        group = [r for r in rows if r[group_by] == key]
+        lines += [f"## {key}", ""]
+        if labels is not None:
+            ids = sorted(
+                {
+                    s
+                    for r in group
+                    for s in r.get("candidate_subject_ids", "").split("|")
+                    if s
+                }
+            )
+            named = ", ".join(f"{s} ({labels.get(s, '?')})" for s in ids)
+            lines += [
+                "**Candidate SOULCAP cell types (unreviewed):** "
+                + (named or "none found"),
+                "",
+            ]
+        for r in group:
+            cite = "; ".join(
+                f"{k.upper()}:{r[k]}" for k in ("pmid", "doi", "pmcid") if r[k]
+            )
+            lines += [
+                f"> {r['quote']}",
+                "",
+                f"— {r['first_author_year']} ({cite}) · `{r['evidence_id']}` · "
+                f"verified: {r['verified']}",
+                "",
+            ]
+    return "\n".join(lines)
+
+
+def write_views(
+    rows: list[dict], out: Path, labels: dict[str, str] | None = None
+) -> None:
+    for kind, key, other, lab in (
+        ("by_cell_type", "cell_type_label", "marker_token", labels or {}),
+        ("by_marker", "marker_token", "cell_type_label", None),
+    ):
+        folder = out / kind
+        folder.mkdir(parents=True, exist_ok=True)
+        for old in folder.glob("*.md"):
+            old.unlink()
+        # Superseded rows stay in evidence.tsv for provenance but not in views.
+        active = [r for r in rows if not r.get("superseded_by")]
+        for value in sorted({r[key] for r in active}):
+            subset = [r for r in active if r[key] == value]
+            (folder / f"{slug(value)}.md").write_text(
+                render_view(value, subset, other, lab), encoding="utf-8"
+            )
+
+
+def read_tsv_any(path: Path) -> list[dict]:
+    return read_tsv(path) if path.exists() else []
+
+
+def read_tsv(path: Path) -> list[dict]:
+    with path.open(encoding="utf-8", newline="") as fh:
+        return list(csv.DictReader(fh, delimiter="\t"))
+
+
+def write_tsv(path: Path, fields: list[str], rows: list[dict]) -> None:
+    with path.open("w", encoding="utf-8", newline="") as fh:
+        writer = csv.DictWriter(
+            fh, fieldnames=fields, delimiter="\t", lineterminator="\n"
+        )
+        writer.writeheader()
+        writer.writerows(rows)
+
+
+def main(argv: list[str] | None = None) -> int:
+    parser = argparse.ArgumentParser(prog="soulcap-evidence", description=__doc__)
+    parser.add_argument("command", choices=["migrate", "candidates", "verify", "views"])
+    parser.add_argument(
+        "--source",
+        type=Path,
+        default=ROOT / "data" / "marker_combinations.csv",
+        help="candidates: synced sheet (needs uv run soulcap-sync)",
+    )
+    parser.add_argument("--literature", type=Path, default=LITERATURE)
+    parser.add_argument(
+        "--force",
+        action="store_true",
+        help="migrate: overwrite an existing evidence.tsv",
+    )
+    args = parser.parse_args(argv)
+    evidence = args.literature / "evidence.tsv"
+    if args.command == "migrate":
+        if evidence.exists() and not args.force:
+            print(
+                "error: evidence.tsv exists; it is now the curated source (use --force)",
+                file=sys.stderr,
+            )
+            return 1
+        rows, unplaced = migrate(list(args.literature.glob("*_markers.md")))
+        write_tsv(evidence, FIELDS, rows)
+        write_tsv(args.literature / "evidence_unplaced.tsv", UNPLACED_FIELDS, unplaced)
+        print(f"{len(rows)} evidence rows, {len(unplaced)} unplaced")
+        return 0
+    if not evidence.exists():
+        print("error: run migrate first", file=sys.stderr)
+        return 1
+    rows = read_tsv(evidence)
+    if args.command == "verify":
+        verify(rows)
+        write_tsv(evidence, FIELDS, rows)
+        counts: dict[str, int] = {}
+        for r in rows:
+            counts[r["verified"]] = counts.get(r["verified"], 0) + 1
+        print(json.dumps(counts, sort_keys=True))
+        return 0
+    if args.command == "candidates":
+        from soulcap_cl_mapping import mapping_evidence
+
+        with args.source.open(encoding="utf-8-sig", newline="") as fh:
+            profiles = mapping_evidence.profile_index(list(csv.DictReader(fh)))
+        add_candidates(rows, profiles)
+        write_tsv(evidence, FIELDS, rows)
+        found = sum(bool(r["candidate_subject_ids"]) for r in rows)
+        print(f"{found} of {len(rows)} rows have candidate cell types (unreviewed)")
+        return 0
+    labels = {
+        r["subject_id"]: r["subject_label"]
+        for r in read_tsv_any(ROOT / "mappings" / "soulcap_entities.tsv")
+    }
+    write_views(rows, args.literature, labels)
+    print(f"views written under {args.literature}")
+    return 0
+
+
+if __name__ == "__main__":
+    raise SystemExit(main())
diff --git a/src/soulcap_cl_mapping/marker_resolution.py b/src/soulcap_cl_mapping/marker_resolution.py
index c3ade82..43da05a 100644
--- a/src/soulcap_cl_mapping/marker_resolution.py
+++ b/src/soulcap_cl_mapping/marker_resolution.py
@@ -25,18 +25,38 @@
     "rationale",
     "source_ref",
     "registry_sha256",
+    "failure_category",
+    "specific_rationale",
+    "evidence_level",
+    "next_action",
 ]
+# Why a withheld token cannot be resolved to one PRO term. Blank for allow rows.
+FAILURE_CATEGORIES = {
+    "carbohydrate_epitope",
+    "lipid_antigen_reagent",
+    "multimer_reagent",
+    "multi_gene_product",
+    "protein_complex",
+    "protein_family",
+    "source_syntax_artifact",
+    "needs_curator",
+}
+EVIDENCE_LEVELS = {
+    "ontology_checked",  # PRO/GO/CHEBI terms looked up and cited
+    "source_traced",  # traced to the sheet rows that produce the token
+    "registry_note_only",  # only the registry's own notes
+}
 
 # Evidence-scoped exceptions, NOT molecular-identity mappings. PR:000025402
 # denotes the whole CD8 coreceptor, unlike the CD8-alpha registry entry.
 # Require an explicit same-token label/exact synonym and this surface relation;
 # do not expand aliases, infer components, or convert generic has-part to surface.
-# Review and frozen-source provenance: reports/regression-followup/README.md.
+# Review and frozen-source provenance: archive/2026-09_resolver_experiments/regression-followup/README.md.
 REVIEWED_SURFACE_ASSERTIONS = {
     ("CD8", "PR:000025402", "RO:0002104", "positive"): {
         "rule_id": "whole_cd8_surface_positive_v1",
         "source_ref": "http://purl.obolibrary.org/obo/PR_000025402",
-        "review_ref": "reports/regression-followup/README.md#scoped-correction",
+        "review_ref": "archive/2026-09_resolver_experiments/regression-followup/README.md#scoped-correction",
         "interpretation": "marker_assertion_not_molecular_equivalence",
     }
 }
@@ -90,6 +110,15 @@ def load(path: Path) -> dict:
                 raise ValueError("Invalid representation or protein resolution policy")
             if not row["rationale"].strip() or not row["source_ref"].strip():
                 raise ValueError("Policy needs rationale and source reference")
+            category = row["failure_category"].strip()
+            if category and (
+                category not in FAILURE_CATEGORIES
+                or row["protein_resolution"] == "allow"
+            ):
+                raise ValueError(f"Invalid failure category for {token}: {category}")
+            level = row["evidence_level"].strip()
+            if level and level not in EVIDENCE_LEVELS:
+                raise ValueError(f"Invalid evidence level for {token}: {level}")
             if row["registry_sha256"] != signature(groups[token]):
                 raise ValueError(
                     f"Stale marker policy: {token}; review registry changes"
diff --git a/src/soulcap_cl_mapping/resolution_audit.py b/src/soulcap_cl_mapping/resolution_audit.py
index 9e84c5c..71a166f 100644
--- a/src/soulcap_cl_mapping/resolution_audit.py
+++ b/src/soulcap_cl_mapping/resolution_audit.py
@@ -60,6 +60,10 @@ def build_report(root: Path, marker_map: Path) -> dict:
                 canonical=resolver["canonical"].get(token),
                 rationale=policy["rationale"],
                 source_ref=policy["source_ref"],
+                failure_category=policy["failure_category"],
+                specific_rationale=policy["specific_rationale"],
+                evidence_level=policy["evidence_level"],
+                next_action=policy["next_action"],
                 registry_tokens=sorted(
                     {r["marker_token"] for r in resolver["groups"][token]}
                 ),
@@ -145,6 +149,10 @@ def main(argv: list[str] | None = None) -> int:
                     "lost",
                     "rationale",
                     "source_ref",
+                    "failure_category",
+                    "specific_rationale",
+                    "evidence_level",
+                    "next_action",
                 ],
                 delimiter="\t",
                 extrasaction="ignore",
@@ -167,6 +175,19 @@ def main(argv: list[str] | None = None) -> int:
             lines.append(
                 f"| {r['marker_token']} | {r['representation']} / {r['protein_resolution']} | {r['legacy_axiom_rows']} → {r['enhanced_axiom_rows']} | {r['rationale'].replace('|', '/').replace(chr(10), ' ')} |"
             )
+        withheld = [r for r in data["markers"] if r["protein_resolution"] == "withhold"]
+        cell = lambda s: s.replace("|", "/").replace(chr(10), " ")  # noqa: E731
+        lines += [
+            "",
+            "## Why each withheld marker is withheld",
+            "",
+            "| Marker | Category | Why | Evidence | Next action |",
+            "|---|---|---|---|---|",
+        ]
+        for r in withheld:
+            lines.append(
+                f"| {r['marker_token']} | {r['failure_category']} | {cell(r['specific_rationale'])} | {r['evidence_level']} | {cell(r['next_action'])} |"
+            )
         lines += [
             "",
             "See JSON for per-mapping evidence, source usage, policy issues, and input hashes.",
diff --git a/src/soulcap_cl_mapping/resolved_types.py b/src/soulcap_cl_mapping/resolved_types.py
new file mode 100644
index 0000000..48ff1c0
--- /dev/null
+++ b/src/soulcap_cl_mapping/resolved_types.py
@@ -0,0 +1,367 @@
+"""List SOULCAP cell types whose markers all resolve to a single PRO term.
+
+A marker token is *resolved* when the explicit policy in
+``marker_mappings/marker_resolution.tsv`` classifies it as ``single_protein``
+with ``allow`` and the token is not an ambiguous alias. Two rules:
+
+- ``strict``: every token in all four marker columns resolves.
+- ``lenient``: every token in the two *Required* columns resolves; the
+  *Ideal* columns are ignored.
+
+The ``live/`` gate is not a marker and is never counted. A profile with a
+syntax error in a column in scope is never resolved. A profile with no token in
+*Required phenotypic markers* is never resolved either: its exclusion panel
+alone cannot define a cell type (such rows are defined by their parent gate). This is a descriptive
+list: it does not assess or change any mapping decision.
+"""
+
+from __future__ import annotations
+
+import argparse
+import csv
+import sys
+from collections import Counter
+from pathlib import Path
+
+from soulcap_cl_mapping import cl_match, mapping_evidence, marker_resolution, registry
+from soulcap_cl_mapping.marker_syntax import (
+    MARKER_COLUMNS,
+    extract_markers,
+    validate_expression,
+)
+
+ROOT = Path(__file__).resolve().parents[2]
+DEFAULT_MARKER_MAP = ROOT / "marker_mappings" / "marker_protein_gene.csv"
+DEFAULT_AXIOMS = ROOT / "reports" / "cl_pro_relationships.tsv"
+DEFAULT_OUT_DIR = ROOT / "reports"
+REQUIRED_COLUMNS = ("Required exclusion", "Required phenotypic markers")
+RULE_COLUMNS = {"strict": MARKER_COLUMNS, "lenient": REQUIRED_COLUMNS}
+
+TYPE_FIELDS = [
+    "subject_id",
+    "label",
+    "abbreviation",
+    "context",
+    "rule",
+    "n_tokens",
+    "tokens",
+    "pro_ids",
+    "curated_cl_id",
+    "cl_label",
+    "match_type",
+    "review_status",
+    "evidence_status",
+    "n_matched",
+    "n_contradictions",
+    "n_unknown",
+    "cl_has_marker_axioms",
+    "n_cl_marker_axioms",
+]
+TERM_FIELDS = [
+    "cl_id",
+    "cl_label",
+    "has_marker_axioms",
+    "n_strict",
+    "n_lenient_only",
+    "match_types",
+    "subject_ids",
+]
+
+
+def resolve_token(token: str, resolver: dict) -> tuple[str, str]:
+    """Return (pro_id, "") if resolved, else ("", reason)."""
+    name = token.strip().upper()
+    if name in resolver["conflicts"]:
+        return "", "ambiguous_alias"
+    owners = resolver["owners"].get(name)
+    if not owners:
+        return "", "not_in_registry"
+    # Several owners are only possible when the resolver merged them because
+    # their policies allow the same PRO ID (otherwise the name is a conflict).
+    for owner in sorted(owners):
+        policy = resolver["policies"][owner]
+        if policy["protein_resolution"] != "allow":
+            return "", f"withheld:{policy['representation']}"
+    pro_ids = {resolver["groups"][o][0]["pro_id"] for o in owners}
+    if len(pro_ids) != 1:
+        return "", "ambiguous_alias"
+    return pro_ids.pop(), ""
+
+
+def assess_profile(profile: dict, resolver: dict) -> dict:
+    """Resolve every token per column; report which rules the profile meets."""
+    columns: dict[str, dict] = {}
+    for column in MARKER_COLUMNS:
+        expr = str(profile.get(column, "") or "").strip()
+        error = validate_expression(expr) if expr else None
+        tokens = {}
+        for token in sorted(extract_markers(expr)):
+            tokens[token] = resolve_token(token, resolver)
+        columns[column] = {"error": error, "tokens": tokens}
+    rules = {}
+    blockers: dict[str, set[str]] = {}
+    for rule, scope in RULE_COLUMNS.items():
+        in_scope = [columns[c] for c in scope]
+        tokens = {t: v for c in in_scope for t, v in c["tokens"].items()}
+        failing = {t for t, (pro, _) in tokens.items() if not pro}
+        errors = [c["error"] for c in in_scope if c["error"]]
+        blockers[rule] = failing | {"<syntax error>" for _ in errors[:1]}
+        rules[rule] = not failing and not errors
+    defining = columns["Required phenotypic markers"]
+    vacuous = not defining["tokens"] and not defining["error"]
+    if vacuous:
+        rules = dict.fromkeys(rules, False)
+    return {
+        "columns": columns,
+        "rules": rules,
+        "blockers": blockers,
+        "vacuous": vacuous,
+    }
+
+
+def axiom_counts(axiom_rows: list[dict]) -> dict[str, int]:
+    return Counter(r["cell"] for r in axiom_rows if r.get("cell"))
+
+
+def build(
+    profiles: dict[str, dict],
+    entities: list[dict],
+    mappings: list[dict],
+    axiom_rows: list[dict],
+    resolver: dict,
+) -> dict:
+    by_subject = {m["subject_id"]: m for m in mappings}
+    axioms = axiom_counts(axiom_rows)
+    types: list[dict] = []
+    blockers: Counter[str] = Counter()
+    single: Counter[str] = Counter()
+    vacuous = 0
+    for entity in entities:
+        sid = entity["subject_id"]
+        profile = profiles.get(sid)
+        if profile is None:
+            continue
+        result = assess_profile(profile, resolver)
+        if result["vacuous"]:
+            vacuous += 1
+            continue
+        for token in result["blockers"]["lenient"]:
+            blockers[token] += 1
+        if len(result["blockers"]["lenient"]) == 1:
+            single[next(iter(result["blockers"]["lenient"]))] += 1
+        if not result["rules"]["lenient"]:
+            continue
+        rule = "strict" if result["rules"]["strict"] else "lenient"
+        scope = RULE_COLUMNS[rule]
+        tokens = {
+            t: pro
+            for c in scope
+            for t, (pro, _) in result["columns"][c]["tokens"].items()
+        }
+        mapping = by_subject.get(sid)
+        row = {
+            "subject_id": sid,
+            "label": entity["subject_label"],
+            "abbreviation": entity["Abbreviation"],
+            "context": entity["WB or PBMC"],
+            "rule": rule,
+            "n_tokens": len(tokens),
+            "tokens": "|".join(sorted(tokens)),
+            "pro_ids": "|".join(f"{t}={tokens[t]}" for t in sorted(tokens)),
+        }
+        if mapping:
+            evidence = mapping_evidence.assess(
+                mapping, profile, axiom_rows, resolver=resolver
+            )
+            cl_id = mapping["cl_id"]
+            row.update(
+                curated_cl_id=cl_id,
+                cl_label=mapping["cl_label"],
+                match_type=mapping["match_type"],
+                review_status=mapping["review_status"],
+                evidence_status=evidence["status"],
+                n_matched=len(evidence["matched"]),
+                n_contradictions=len(evidence["contradictions"]),
+                n_unknown=len(evidence["gaps"]),
+                cl_has_marker_axioms="yes" if axioms[cl_id] else "no",
+                n_cl_marker_axioms=axioms[cl_id],
+            )
+        types.append({k: row.get(k, "") for k in TYPE_FIELDS})
+    return {
+        "types": types,
+        "terms": unique_terms(types),
+        "blockers": blockers,
+        "single_blockers": single,
+        "vacuous": vacuous,
+    }
+
+
+def unique_terms(types: list[dict]) -> list[dict]:
+    terms: dict[str, dict] = {}
+    for t in types:
+        if not t["curated_cl_id"]:
+            continue
+        term = terms.setdefault(
+            t["curated_cl_id"],
+            {
+                "cl_id": t["curated_cl_id"],
+                "cl_label": t["cl_label"],
+                "has_marker_axioms": t["cl_has_marker_axioms"],
+                "n_strict": 0,
+                "n_lenient_only": 0,
+                "match_types": set(),
+                "subject_ids": [],
+            },
+        )
+        term["n_strict" if t["rule"] == "strict" else "n_lenient_only"] += 1
+        term["match_types"].add(t["match_type"])
+        term["subject_ids"].append(t["subject_id"])
+    return [
+        {
+            **term,
+            "match_types": "|".join(sorted(term["match_types"])),
+            "subject_ids": "|".join(term["subject_ids"]),
+        }
+        for term in sorted(terms.values(), key=lambda x: x["cl_id"])
+    ]
+
+
+def breakdown(types: list[dict], rule: str) -> dict:
+    """Counts for cell types meeting ``rule`` (strict also meets lenient)."""
+    rows = [t for t in types if rule == "lenient" or t["rule"] == "strict"]
+    mapped = [t for t in rows if t["curated_cl_id"]]
+    return {
+        "cell_types": len(rows),
+        "with_proposal": len(mapped),
+        "without_proposal": len(rows) - len(mapped),
+        "match_type": Counter(t["match_type"] for t in mapped),
+        "contradictions": Counter(
+            "has contradictions" if int(t["n_contradictions"]) else "no contradictions"
+            for t in mapped
+        ),
+        "cl_axioms": Counter(
+            "CL term has marker axioms"
+            if t["cl_has_marker_axioms"] == "yes"
+            else "CL term has no marker axioms"
+            for t in mapped
+        ),
+        "match_type_x_contradictions": Counter(
+            (
+                t["match_type"],
+                bool(int(t["n_contradictions"])),
+                t["cl_has_marker_axioms"],
+            )
+            for t in mapped
+        ),
+    }
+
+
+def render_summary(data: dict, n_profiles: int) -> str:
+    lines = [
+        "# Fully resolved SOULCAP cell types",
+        "",
+        "Generated by `uv run soulcap-resolved`. Do not edit by hand.",
+        "",
+        "A cell type is **fully resolved** when every marker token in scope maps to",
+        "exactly one PRO term under an explicit `single_protein` / `allow` policy in",
+        "`marker_mappings/marker_resolution.tsv`. **Strict** covers all four marker",
+        "columns; **lenient** covers only the two *Required* columns. The `live/`",
+        "gate is never counted. Marker evidence is computed with the same policies",
+        "(`--marker-map` mode). All proposals are `needs_review`; nothing here is a",
+        "confidence judgement.",
+        "",
+        f"Profiles assessed: {n_profiles}. Excluded: {data['vacuous']} with no",
+        "*Required phenotypic markers* (defined only by their parent gate, so the",
+        "exclusion panel alone would count as resolved).",
+        "",
+    ]
+    for rule in ("strict", "lenient"):
+        b = breakdown(data["types"], rule)
+        lines += [
+            f"## {rule.capitalize()}",
+            "",
+            f"- Cell types fully resolved: **{b['cell_types']}** "
+            f"({b['with_proposal']} with a proposed CL mapping, "
+            f"{b['without_proposal']} without)",
+        ]
+        for key in ("match_type", "contradictions", "cl_axioms"):
+            parts = ", ".join(f"{k}: {v}" for k, v in sorted(b[key].items()))
+            lines.append(f"- {parts or 'none'}")
+        lines += [
+            "",
+            "| Match type | Contradictions | CL term has marker axioms | Cell types |",
+            "|---|---|---|---:|",
+        ]
+        for (mt, contra, ax), n in sorted(b["match_type_x_contradictions"].items()):
+            lines.append(f"| {mt} | {'yes' if contra else 'no'} | {ax} | {n} |")
+        lines.append("")
+    terms = data["terms"]
+    lines += [
+        "## Unique CL terms reached",
+        "",
+        f"{len(terms)} distinct CL terms (strict or lenient). "
+        "See `fully_resolved_cl_terms.tsv`.",
+        "",
+        "## Tokens blocking the lenient rule",
+        "",
+        "How many assessed cell types each unresolved token (in a Required column)",
+        "blocks, and how many it is the *only* blocker for.",
+        "",
+        "| Token | Cell types blocked | Only blocker |",
+        "|---|---:|---:|",
+    ]
+    for token, n in sorted(data["blockers"].items(), key=lambda x: (-x[1], x[0])):
+        lines.append(f"| `{token}` | {n} | {data['single_blockers'][token]} |")
+    return "\n".join(lines) + "\n"
+
+
+def write_tsv(path: Path, fields: list[str], rows: list[dict]) -> None:
+    with path.open("w", encoding="utf-8", newline="") as fh:
+        writer = csv.DictWriter(fh, fieldnames=fields, delimiter="\t")
+        writer.writeheader()
+        writer.writerows(rows)
+
+
+def main(argv: list[str] | None = None) -> int:
+    parser = argparse.ArgumentParser(prog="soulcap-resolved", description=__doc__)
+    parser.add_argument(
+        "--source", type=Path, default=cl_match.DEFAULT_MARKER_COMBINATIONS
+    )
+    parser.add_argument("--marker-map", type=Path, default=DEFAULT_MARKER_MAP)
+    parser.add_argument("--tsv", type=Path, default=DEFAULT_AXIOMS)
+    parser.add_argument("--mappings", type=Path, default=registry.DEFAULT_MAPPINGS)
+    parser.add_argument("--entities", type=Path, default=registry.DEFAULT_IDENTITIES)
+    parser.add_argument("--out-dir", type=Path, default=DEFAULT_OUT_DIR)
+    args = parser.parse_args(argv)
+    try:
+        resolver = marker_resolution.load(args.marker_map)
+        with args.source.open(encoding="utf-8-sig", newline="") as fh:
+            profiles = mapping_evidence.profile_index(list(csv.DictReader(fh)))
+        data = build(
+            profiles,
+            registry.read_table(args.entities),
+            registry.load_mappings(args.mappings),
+            registry.read_table(args.tsv),
+            resolver,
+        )
+    except Exception as exc:
+        print(f"error: {exc}", file=sys.stderr)
+        return 1
+    args.out_dir.mkdir(parents=True, exist_ok=True)
+    write_tsv(
+        args.out_dir / "fully_resolved_cell_types.tsv", TYPE_FIELDS, data["types"]
+    )
+    write_tsv(args.out_dir / "fully_resolved_cl_terms.tsv", TERM_FIELDS, data["terms"])
+    (args.out_dir / "fully_resolved_summary.md").write_text(
+        render_summary(data, len(profiles)), encoding="utf-8"
+    )
+    strict = sum(t["rule"] == "strict" for t in data["types"])
+    print(
+        f"{strict} strict, {len(data['types'])} lenient (incl. strict), "
+        f"{len(data['terms'])} unique CL terms -> {args.out_dir}"
+    )
+    return 0
+
+
+if __name__ == "__main__":
+    raise SystemExit(main())
diff --git a/tests/test_doc_links.py b/tests/test_doc_links.py
new file mode 100644
index 0000000..437e243
--- /dev/null
+++ b/tests/test_doc_links.py
@@ -0,0 +1,85 @@
+"""Every relative link in the hand-written Markdown docs must resolve."""
+
+import re
+from pathlib import Path
+
+import pytest
+
+ROOT = Path(__file__).resolve().parents[1]
+
+# Hand-written docs. Generated reports are excluded: they are rewritten by
+# their CLI, and archived copies are frozen snapshots.
+DOC_GLOBS = [
+    "*.md",
+    "**/README.md",
+    "docs/**/*.md",
+    "cell_type_reviews/*.md",
+    "literature/*.md",
+    "reports/candidate_cl_mappings_narrative.md",
+    "reports/cl_term_issues.md",
+    "reports/marker_string_issues.md",
+]
+SKIP_DIRS = {".venv", ".uv-cache", ".test-runs", ".pytest_cache", "node_modules"}
+LINK = re.compile(r"\[[^\]]*\]\(([^)\s]+)(?:\s+\"[^\"]*\")?\)")
+FENCE = re.compile(r"^(```|~~~).*?^\1", re.MULTILINE | re.DOTALL)
+INLINE_CODE = re.compile(r"`[^`\n]*`")
+
+
+def doc_files() -> list[Path]:
+    found = set()
+    for pattern in DOC_GLOBS:
+        for path in ROOT.glob(pattern):
+            rel = path.relative_to(ROOT)
+            if not SKIP_DIRS.intersection(rel.parts):
+                found.add(path)
+    return sorted(found)
+
+
+def relative_links(text: str) -> list[str]:
+    text = INLINE_CODE.sub("", FENCE.sub("", text))
+    links = []
+    for target in LINK.findall(text):
+        target = target.strip("<>")
+        if re.match(r"^[a-z][a-z0-9+.-]*:", target, re.IGNORECASE):
+            continue  # http:, https:, mailto:, ...
+        path = target.split("#", 1)[0]
+        if path:
+            links.append(path)
+    return links
+
+
+def test_finds_docs() -> None:
+    names = {p.relative_to(ROOT).as_posix() for p in doc_files()}
+    assert {"README.md", "CLAUDE.md", "reports/README.md"} <= names
+
+
+def test_relative_links_extraction() -> None:
+    text = (
+        "[a](x.md) [b](https://e.org) [c](#anchor) [d](y.md#s) `[e](no.md)`\n"
+        "```\n[f](fenced.md)\n```\n"
+    )
+    assert relative_links(text) == ["x.md", "y.md"]
+
+
+@pytest.mark.parametrize(
+    "doc", doc_files(), ids=lambda p: p.relative_to(ROOT).as_posix()
+)
+def test_relative_links_resolve(doc: Path) -> None:
+    missing = []
+    for link in relative_links(doc.read_text(encoding="utf-8")):
+        target = (doc.parent / link).resolve()
+        # data/ is a gitignored cache that CI never has.
+        if target.is_relative_to(ROOT / "data"):
+            continue
+        if not target.exists():
+            missing.append(link)
+    assert not missing, f"Broken links in {doc.relative_to(ROOT)}: {missing}"
+
+
+def test_reports_readme_lists_every_report() -> None:
+    readme = (ROOT / "reports/README.md").read_text(encoding="utf-8")
+    listed = set(relative_links(readme))
+    files = {p.name for p in (ROOT / "reports").iterdir() if p.is_file()} - {
+        "README.md"
+    }
+    assert not files - listed, f"Add to reports/README.md: {sorted(files - listed)}"
diff --git a/tests/test_literature_evidence.py b/tests/test_literature_evidence.py
new file mode 100644
index 0000000..000bf12
--- /dev/null
+++ b/tests/test_literature_evidence.py
@@ -0,0 +1,360 @@
+import json
+
+import pytest
+
+from soulcap_cl_mapping import literature_evidence as le
+
+NARRATIVE = """# NK Cell Marker Literature Support
+
+> **Extraction note.** Not a quote.
+
+## Markers with evidence
+
+### CD56 (positive marker)
+
+> "NK cells are CD56+ and
+> CD3−" [Table 1]
+— Smith et al. 2020 (PMID: 111; DOI: 10.1/abc)
+
+### CD19 and CD20 (exclusion markers)
+
+> "cells were CD19− before sorting"
+
+> "no marker named here"
+
+— Jones J et al. 2021 (DOI:10.2/xyz; PMC: PMC999)
+
+**Discrepancy flag — Lee 2022:** differs.
+
+> "CD20 is sometimes low"
+— Lee 2022 (no identifier)
+
+### Distinction: NK vs ILC
+
+> "ILCs lack CD16"
+— Kim 2019 (PMID: 222)
+
+### CD16 (dangling)
+
+> "CD16 without attribution"
+
+## Markers with no direct evidence found
+
+> "CD57 mentioned here"
+— Park 2018 (PMID: 333)
+"""
+
+
+@pytest.fixture
+def narrative(tmp_path):
+    path = tmp_path / "nk_cell_markers.md"
+    path.write_text(NARRATIVE, encoding="utf-8")
+    return path
+
+
+def test_heading_markers_and_bare_names():
+    assert le.heading_markers("### CD11c / ITGAX (required high)") == [
+        ["CD11c", "ITGAX"]
+    ]
+    assert le.heading_markers("### CD19 and CD20 (exclusion)") == [["CD19"], ["CD20"]]
+    assert le.heading_markers("### Lineage exclusion markers (CD14, CD33)") == [
+        ["CD14"],
+        ["CD33"],
+    ]
+    assert le.heading_markers("### Distinction: NK vs ILC") == []
+    assert le.bare("CD56bright") == "CD56"
+    assert le.bare("CD127lo/-") == "CD127"
+    assert le.bare("CD1d-α-GalCer Tetramer") == "CD1d-α-GalCer Tetramer"
+
+
+def test_parse_citation_and_blockquote_note():
+    cite = le.parse_citation(
+        "— Smith et al. 2020 (PMID: 111; DOI: 10.1/abc; PMC: PMC5)"
+    )
+    assert (cite["pmid"], cite["doi"], cite["pmcid"]) == ("111", "10.1/abc", "PMC5")
+    assert cite["first_author_year"] == "Smith et al. 2020"
+    assert le.split_blockquote('"quoted text" \\[Table 2\\]') == (
+        '"quoted text"',
+        "Table 2",
+    )
+
+
+def test_parse_file_places_and_logs(narrative):
+    rows, unplaced = le.migrate([narrative])
+    by_marker = {(r["marker_token"], r["quote"]) for r in rows}
+    assert ("CD56", '"NK cells are CD56+ and CD3−"') in by_marker
+    assert ("CD19", '"cells were CD19− before sorting"') in by_marker
+    first = rows[0]
+    assert first["evidence_id"] == "EV00001"
+    assert first["notes"] == "Table 1"
+    assert first["verified"] == "not_checked"
+    assert first["cell_type_label"] == "NK cell"
+    assert first["subject_id"] == ""
+    reasons = {u["reason"] for u in unplaced}
+    assert (
+        "section names several markers and the quote mentions none of them" in reasons
+    )
+    assert "citation has no PMID, DOI or PMCID" in reasons
+    assert "section heading names no marker" in reasons
+    assert "no attribution line before the next heading" in reasons
+    assert "quote outside a 'Markers with evidence' part" in reasons
+    # The extraction note is a blockquote without an attribution.
+    assert any("Extraction note" in u["quote"] for u in unplaced)
+
+
+def test_discrepancy_marks_qualifies_and_webfetch_default(tmp_path):
+    text = NARRATIVE.replace("— Lee 2022 (no identifier)", "— Lee 2022 (PMID: 444)")
+    path = tmp_path / "t_cell_markers.md"
+    path.write_text(text, encoding="utf-8")
+    rows, _ = le.migrate([path])
+    lee = [r for r in rows if r["pmid"] == "444"]
+    assert lee and lee[0]["supports_or_contradicts"] == "qualifies"
+    assert lee[0]["cell_type_label"] == "T cell"
+    assert all(r["verified"] == "no" for r in rows)
+
+
+def test_check_quote_exact_near_and_mismatch():
+    text = "Cells were CD38+++ and **CD24**hi. NK cells – rare."
+    assert (
+        le.check_quote('"Cells were CD38+++ and CD24hi"', text.replace("**", ""))[0]
+        == "yes"
+    )
+    assert le.check_quote('"Cells were CD38+++" ... "rare"', text)[0] == "yes"
+    assert le.check_quote('"cells were CD38+++"', text)[0] == "no"  # case matters
+    verdict, note = le.check_quote('"NK cells - rare"', text)
+    assert verdict == "no" and note.startswith("near-match")
+    verdict, note = le.check_quote('"Cells were CD19+"', text)
+    assert verdict == "no" and "first 13 of 16 chars match" in note
+    assert le.fragments('"**ASC**: CD19+" and "*M*: CD27+"') == [
+        "ASC: CD19+",
+        "M: CD27+",
+    ]
+    assert le.fragments('"(*) LIN2 is"') == ["(*) LIN2 is"]
+    verdict, note = le.check_quote('"NK cells rare."', "some NK cells rare[12].")
+    assert verdict == le.TRAILING and note.startswith("exact apart")
+
+
+def fake_epmc(pages):
+    def get(url):
+        for key, body in pages.items():
+            if key in url:
+                if isinstance(body, Exception):
+                    raise body
+                return body
+        raise OSError(url)
+
+    return get
+
+
+def test_verify_resolves_pmcid_and_fetches_once():
+    xml = b"<article><body><p>NK cells are CD56<sup>+</sup> cells.</p></body></article>"
+    search = json.dumps({"resultList": {"result": [{"pmcid": "PMC1"}]}}).encode()
+    calls = []
+    pages = {"search": search, "PMC1/fullTextXML": xml}
+
+    def get(url):
+        calls.append(url)
+        return fake_epmc(pages)(url)
+
+    rows = [
+        dict(
+            quote='"NK cells are CD56+ cells"',
+            pmid="1",
+            doi="",
+            pmcid="",
+            verified="no",
+            verification_note="",
+        ),
+        dict(
+            quote='"NK cells are CD57+"',
+            pmid="",
+            doi="10.1/a",
+            pmcid="",
+            verified="not_checked",
+            verification_note="",
+        ),
+        dict(
+            quote='"done"',
+            pmid="",
+            doi="",
+            pmcid="PMC1",
+            verified="yes",
+            verification_note="kept",
+        ),
+    ]
+    le.verify(rows, get)
+    assert rows[0]["verified"] == "yes" and rows[0]["pmcid"] == "PMC1"
+    assert rows[1]["verified"] == "no"
+    assert rows[2]["verification_note"] == "kept"
+    assert sum("fullTextXML" in c for c in calls) == 1
+
+
+def test_verify_handles_missing_full_text_and_errors():
+    none = json.dumps({"resultList": {"result": []}}).encode()
+    rows = [
+        dict(
+            quote='"x"', pmid="5", doi="", pmcid="", verified="no", verification_note=""
+        )
+    ]
+    le.verify(rows, fake_epmc({"search": none}))
+    assert rows[0]["verification_note"].startswith("no open-access")
+    rows = [
+        dict(
+            quote='"x"',
+            pmid="",
+            doi="",
+            pmcid="PMC2",
+            verified="no",
+            verification_note="",
+        )
+    ]
+    le.verify(rows, fake_epmc({"PMC2": b"not xml"}))
+    assert "full text not available" in rows[0]["verification_note"]
+    rows = [
+        dict(
+            quote='"x"', pmid="5", doi="", pmcid="", verified="no", verification_note=""
+        )
+    ]
+    le.verify(rows, fake_epmc({"search": OSError("down")}))
+    assert rows[0]["verification_note"].startswith("Europe PMC lookup failed")
+
+
+def test_views_and_cli(tmp_path, narrative, monkeypatch, capsys):
+    lit = narrative.parent
+    assert le.main(["migrate", "--literature", str(lit)]) == 0
+    assert le.main(["migrate", "--literature", str(lit)]) == 1  # refuses to overwrite
+    assert le.main(["migrate", "--literature", str(lit), "--force"]) == 0
+    assert (lit / "evidence_unplaced.tsv").exists()
+    assert le.main(["views", "--literature", str(lit)]) == 0
+    view = (lit / "by_marker" / "cd56.md").read_text(encoding="utf-8")
+    assert "Do not edit by hand" in view and "EV00001" in view
+    assert (lit / "by_cell_type" / "nk-cell.md").exists()
+    monkeypatch.setattr(le, "http_get", lambda url: (_ for _ in ()).throw(OSError()))
+    monkeypatch.setattr(le, "verify", lambda rows: None)
+    assert le.main(["verify", "--literature", str(lit)]) == 0
+    empty = tmp_path / "empty"
+    empty.mkdir()
+    assert le.main(["views", "--literature", str(empty)]) == 1
+    assert le.slug("TCR Vδ2") == "tcr-v-2"
+
+
+def test_committed_evidence_quotes_are_copied_exactly_from_their_source():
+    """Every quote in literature/evidence.tsv appears verbatim in its source file."""
+    root = le.ROOT
+    rows = le.read_tsv(root / "literature" / "evidence.tsv")
+    assert rows
+    cache: dict[str, list[str]] = {}
+    for row in rows:
+        path = root / row["source_file"]
+        if not row["source_file"] or not path.is_file():
+            # Added directly from the paper (no narrative source line).
+            continue
+        if row["source_file"] not in cache:
+            cache[row["source_file"]] = path.read_text(encoding="utf-8").splitlines()
+        lines = cache[row["source_file"]]
+        start = int(row["source_line"]) - 1
+        block = []
+        for line in lines[start:]:
+            if not line.startswith(">"):
+                break
+            block.append(line[1:].strip())
+        assert row["quote"] in " ".join(block), row["evidence_id"]
+        assert row["verified"] in le.VERIFIED_VALUES
+        if row["source_file"].endswith(tuple(le.WEBFETCH_FILES)):
+            assert row["verified"] != "not_checked", row["evidence_id"]
+
+
+def profile(abbrev, parent="", req="", ideal_excl=""):
+    cols = dict.fromkeys(le.MARKER_COLUMNS, "")
+    cols["Required phenotypic markers"] = req
+    cols["Ideal exclusion"] = ideal_excl
+    return {"Abbreviation": abbrev, "Parent": parent, **cols}
+
+
+def test_families_and_marker_candidates():
+    profiles = {
+        "S:1": profile("NK", req="CD56+/hi CD127-"),
+        "S:2": profile(
+            "NK2", parent="NK", req="CD56hi", ideal_excl="[HLA-DR+ CD11chi]-"
+        ),
+        "S:3": profile("T cell", req="CD3+"),
+        "S:4": profile("TCRgd", parent="T cell", req="CD3+ (TCRab-|TCRgd+) TCRVd2+"),
+        "S:5": profile("MAIT", parent="T Lymph", req="CD3+ (TCRVa7.2+|MR1 Tetramer+)"),
+        "S:6": profile("cDC1", parent="DCM", req="CD11chi CD1c-"),
+    }
+    fam = le.families(profiles)
+    assert fam["NK cell"] == {"S:1", "S:2"}
+    assert fam["T cell"] == {"S:3", "S:4", "S:5"}
+    assert fam["gamma-delta T cell"] == {"S:4"}
+    assert fam["MAIT cell"] == {"S:5"}
+    assert fam["dendritic cell"] == {"S:6"}
+    assert le.uses_marker(profiles["S:2"], "CD11c")  # CD11chi, in an exclusion
+    assert not le.uses_marker(profiles["S:3"], "CD38")
+    assert not le.uses_marker(profiles["S:1"], "CD5")  # not CD56
+    assert le.uses_marker(profiles["S:4"], "TCR Vδ2")
+    assert le.uses_marker(profiles["S:5"], "MR1 Tetramer")
+    rows = [
+        {"cell_type_label": "NK cell", "marker_token": "CD56"},
+        {"cell_type_label": "NK cell", "marker_token": "CD57"},
+    ]
+    le.add_candidates(rows, profiles)
+    assert rows[0]["candidate_subject_ids"] == "S:1|S:2"
+    assert rows[0]["candidate_status"] == "unreviewed"
+    assert rows[1]["candidate_status"] == "none_found"
+    view = le.render_view(
+        "NK cell",
+        [
+            dict(
+                rows[0],
+                quote='"q"',
+                first_author_year="A 2020",
+                pmid="1",
+                doi="",
+                pmcid="",
+                evidence_id="EV1",
+                verified="yes",
+            )
+        ],
+        "marker_token",
+        {"S:1": "Natural Killer Cell"},
+    )
+    assert (
+        "Candidate SOULCAP cell types (unreviewed):** S:1 (Natural Killer Cell), S:2 (?)"
+        in view
+    )
+
+
+def test_candidates_cli(tmp_path, narrative):
+    lit = narrative.parent
+    assert le.main(["migrate", "--literature", str(lit)]) == 0
+    source = tmp_path / "sheet.csv"
+    header = ["subject_id", "Abbreviation", "Parent", *le.MARKER_COLUMNS]
+    source.write_text(
+        ",".join(header) + "\nSOULCAP:SC000001,NK,,,,CD56+,\n", encoding="utf-8"
+    )
+    assert (
+        le.main(["candidates", "--literature", str(lit), "--source", str(source)]) == 0
+    )
+    rows = le.read_tsv(lit / "evidence.tsv")
+    cd56 = [r for r in rows if r["marker_token"] == "CD56"]
+    assert cd56[0]["candidate_subject_ids"] == "SOULCAP:SC000001"
+
+
+def test_views_skip_superseded_rows(tmp_path):
+    base = dict(
+        cell_type_label="NK cell",
+        quote='"q"',
+        first_author_year="A 2020",
+        pmid="1",
+        doi="",
+        pmcid="",
+        verified="yes",
+        candidate_subject_ids="",
+    )
+    rows = [
+        dict(base, evidence_id="EV1", marker_token="CD56", superseded_by="EV2"),
+        dict(base, evidence_id="EV2", marker_token="CD56", superseded_by=""),
+    ]
+    le.write_views(rows, tmp_path)
+    view = (tmp_path / "by_marker" / "cd56.md").read_text(encoding="utf-8")
+    assert "EV2" in view and "EV1" not in view
diff --git a/tests/test_marker_resolution.py b/tests/test_marker_resolution.py
index 8a30781..406d174 100644
--- a/tests/test_marker_resolution.py
+++ b/tests/test_marker_resolution.py
@@ -103,6 +103,9 @@ def change_policy(path, update):
             representation="complex", protein_resolution="allow"
         ),
         lambda rows: rows.clear(),
+        # An allowed marker cannot carry a failure category.
+        lambda rows: rows[0].update(failure_category="protein_family"),
+        lambda rows: rows[0].update(evidence_level="hunch"),
     ],
 )
 def test_invalid_or_stale_policy_rejected(tmp_path, update):
@@ -112,6 +115,41 @@ def test_invalid_or_stale_policy_rejected(tmp_path, update):
         mr.load(path)
 
 
+def test_withheld_policy_failure_category(tmp_path):
+    path = marker_file(tmp_path, [marker(), marker("HLA-DR", "HLA-DR", "PR:1")])
+    ok = dict(
+        failure_category="protein_complex",
+        specific_rationale="heterodimer",
+        evidence_level="ontology_checked",
+        next_action="ask David",
+    )
+    change_policy(path, lambda rows: rows[1].update(ok))
+    assert mr.load(path)["policies"]["HLA-DR"]["failure_category"] == "protein_complex"
+    change_policy(path, lambda rows: rows[1].update(failure_category="mystery"))
+    with pytest.raises(ValueError, match="failure category"):
+        mr.load(path)
+
+
+REAL_MARKER_MAP = Path(__file__).resolve().parents[1] / (
+    "marker_mappings/marker_protein_gene.csv"
+)
+
+
+def test_every_real_withheld_marker_says_why():
+    policies = mr.load(REAL_MARKER_MAP)["policies"]
+    withheld = {
+        t: p for t, p in policies.items() if p["protein_resolution"] == "withhold"
+    }
+    assert withheld
+    for token, p in withheld.items():
+        assert p["failure_category"] in mr.FAILURE_CATEGORIES, token
+        assert p["evidence_level"] in mr.EVIDENCE_LEVELS, token
+        assert p["specific_rationale"].strip(), token
+        assert p["next_action"].strip(), token
+    allowed = [p for p in policies.values() if p["protein_resolution"] == "allow"]
+    assert all(not p["failure_category"] for p in allowed)
+
+
 def test_missing_or_malformed_policy(tmp_path):
     path = marker_file(tmp_path, [marker()])
     p = mr.policy_path(path)
@@ -152,6 +190,9 @@ def test_export_audit_report_consistency(snapshot, tmp_path):
     report = json.loads((snapshot / "reports/marker_resolution_audit.json").read_text())
     assert report["summary"]["normalized_markers"] == 1
     assert report["mapping_comparisons"][0]["enhanced_evidence"] == expected
+    assert "failure_category" in report["markers"][0]
+    md = (snapshot / "reports/marker_resolution_audit.md").read_text(encoding="utf-8")
+    assert "## Why each withheld marker is withheld" in md
     out = snapshot / "enhanced"
     assert (
         audit.main(
diff --git a/tests/test_resolved_types.py b/tests/test_resolved_types.py
new file mode 100644
index 0000000..1a94c58
--- /dev/null
+++ b/tests/test_resolved_types.py
@@ -0,0 +1,166 @@
+import csv
+
+from soulcap_cl_mapping import marker_resolution as mr
+from soulcap_cl_mapping import resolved_types as rt
+from tests.test_candidate_index import marker, marker_file
+
+CD4 = marker("CD4", "CD4", "PR:000001004")
+CD3 = marker("CD3", "CD3", "")  # no PRO ID -> unresolved policy
+CD19 = marker("CD19", "CD19", "PR:000001002")
+HLADR = marker("HLA-DR", "HLA-DR", "PR:000000001")  # helper withholds HLA-DR
+
+
+def resolver(tmp_path, rows=(CD4, CD3, CD19, HLADR)):
+    return mr.load(marker_file(tmp_path, list(rows)))
+
+
+def profile(**cols):
+    base = dict.fromkeys(rt.MARKER_COLUMNS, "")
+    names = {
+        "rx": "Required exclusion",
+        "ix": "Ideal exclusion",
+        "rp": "Required phenotypic markers",
+        "ip": "Ideal phenotypic markers",
+    }
+    base.update({names[k]: v for k, v in cols.items()})
+    return base
+
+
+def test_resolve_token_reasons(tmp_path):
+    r = resolver(tmp_path)
+    assert rt.resolve_token("cd4", r) == ("PR:000001004", "")
+    assert rt.resolve_token("CD99", r) == ("", "not_in_registry")
+    assert rt.resolve_token("CD3", r) == ("", "withheld:unresolved")
+    assert rt.resolve_token("HLA-DR", r)[1].startswith("withheld:")
+
+
+def test_resolve_token_merged_and_conflicting_aliases(tmp_path):
+    merged = resolver(tmp_path, [marker(), marker("CD194", "CCR4|CD194")])
+    assert rt.resolve_token("CD194", merged) == ("PR:000001200", "")
+    conflict = resolver(
+        tmp_path,
+        [marker("A", "X", "PR:000000011"), marker("B", "X", "PR:000000012")],
+    )
+    assert rt.resolve_token("X", conflict) == ("", "ambiguous_alias")
+
+
+def test_strict_and_lenient_rules(tmp_path):
+    r = resolver(tmp_path)
+    both = rt.assess_profile(profile(rx="live/ CD19-", rp="CD4+", ip="CD4hi"), r)
+    assert both["rules"] == {"strict": True, "lenient": True}
+    ideal_blocked = rt.assess_profile(profile(rp="CD4+", ix="HLA-DR-"), r)
+    assert ideal_blocked["rules"] == {"strict": False, "lenient": True}
+    assert ideal_blocked["blockers"]["strict"] == {"HLA-DR"}
+    required_blocked = rt.assess_profile(profile(rx="CD3-", rp="CD4+"), r)
+    assert required_blocked["rules"]["lenient"] is False
+    assert required_blocked["blockers"]["lenient"] == {"CD3"}
+
+
+def test_vacuous_and_syntax_error_profiles_never_resolve(tmp_path):
+    r = resolver(tmp_path)
+    vacuous = rt.assess_profile(profile(rx="CD19-"), r)
+    assert vacuous["vacuous"] and not any(vacuous["rules"].values())
+    broken = rt.assess_profile(profile(rp="CD4+ [CD19-"), r)
+    assert not broken["vacuous"]
+    assert broken["rules"]["lenient"] is False
+    assert "<syntax error>" in broken["blockers"]["lenient"]
+
+
+def test_build_breakdown_terms_and_summary(tmp_path):
+    r = resolver(tmp_path)
+    profiles = {
+        "S1": profile(rx="CD19-", rp="CD4+"),
+        "S2": profile(rp="CD4+", ix="HLA-DR-"),
+        "S3": profile(rx="CD3-", rp="CD4+"),
+        "S4": profile(rx="CD19-"),
+        "S5": profile(rp="CD4+"),
+    }
+    entities = [
+        {"subject_id": s, "subject_label": s, "Abbreviation": s, "WB or PBMC": ""}
+        for s in [*profiles, "S9"]
+    ]
+    mappings = [
+        {
+            "subject_id": s,
+            "cl_id": cl,
+            "cl_label": "cell",
+            "match_type": mt,
+            "review_status": "needs_review",
+        }
+        for s, cl, mt in [("S1", "CL:1", "Exact"), ("S2", "CL:1", "Broad")]
+    ]
+    axioms = [
+        {
+            "cell": "CL:1",
+            "cell_label": "cell",
+            "sense": "negative",
+            "pr": "PR:000001004",
+            "cd_synonym": "",
+            "asserted": "True",
+        }
+    ]
+    data = rt.build(profiles, entities, mappings, axioms, r)
+    by_id = {t["subject_id"]: t for t in data["types"]}
+    assert set(by_id) == {"S1", "S2", "S5"}
+    assert by_id["S1"]["rule"] == "strict"
+    assert by_id["S2"]["rule"] == "lenient"
+    assert by_id["S1"]["pro_ids"] == "CD19=PR:000001002|CD4=PR:000001004"
+    assert by_id["S1"]["n_contradictions"] == 1  # CL says CD4 negative
+    assert by_id["S1"]["cl_has_marker_axioms"] == "yes"
+    assert by_id["S5"]["curated_cl_id"] == ""
+    assert data["vacuous"] == 1
+    assert data["single_blockers"]["CD3"] == 1
+    (term,) = data["terms"]
+    assert (term["n_strict"], term["n_lenient_only"]) == (1, 1)
+    assert term["match_types"] == "Broad|Exact"
+    strict = rt.breakdown(data["types"], "strict")
+    assert strict["cell_types"] == 2 and strict["with_proposal"] == 1
+    lenient = rt.breakdown(data["types"], "lenient")
+    assert lenient["match_type"] == {"Exact": 1, "Broad": 1}
+    assert lenient["contradictions"]["has contradictions"] == 2
+    summary = rt.render_summary(data, len(profiles))
+    assert "Excluded: 1" in summary
+    assert "| `CD3` | 1 | 1 |" in summary
+    assert "1 distinct CL terms" in summary
+
+
+def test_main_writes_outputs_and_reports_errors(tmp_path, capsys):
+    mm = marker_file(tmp_path, [CD4, CD19])
+    source = tmp_path / "source.csv"
+    with source.open("w", encoding="utf-8", newline="") as fh:
+        writer = csv.DictWriter(
+            fh, fieldnames=["subject_id", "Abbreviation", *rt.MARKER_COLUMNS]
+        )
+        writer.writeheader()
+        writer.writerow(
+            {
+                "subject_id": "SOULCAP:SC000001",
+                "Abbreviation": "NK",
+                **profile(rx="CD19-", rp="CD4+"),
+            }
+        )
+    mappings = tmp_path / "mappings.tsv"
+    fields = ["subject_id", "cl_id", "cl_label", "match_type", "review_status"]
+    mappings.write_text(
+        "\t".join(fields)
+        + "\nSOULCAP:SC000001\tCL:0000623\tnatural killer cell\tExact\tneeds_review\n",
+        encoding="utf-8",
+    )
+    axioms = tmp_path / "axioms.tsv"
+    axioms.write_text("cell\tsense\tpr\tcd_synonym\n", encoding="utf-8")
+    out = tmp_path / "out"
+    args = ["--source", str(source), "--marker-map", str(mm), "--tsv", str(axioms)]
+    assert rt.main([*args, "--mappings", str(mappings), "--out-dir", str(out)]) == 0
+    assert "1 strict" in capsys.readouterr().out
+    rows = list(
+        csv.DictReader(
+            (out / "fully_resolved_cell_types.tsv").open(encoding="utf-8"),
+            delimiter="\t",
+        )
+    )
+    assert rows[0]["curated_cl_id"] == "CL:0000623"
+    assert rows[0]["cl_has_marker_axioms"] == "no"
+    assert (out / "fully_resolved_cl_terms.tsv").exists()
+    assert (out / "fully_resolved_summary.md").exists()
+    assert rt.main([*args, "--mappings", str(tmp_path / "missing.tsv")]) == 1
+    assert "error:" in capsys.readouterr().err