diff --git a/.claude/skills/gap-issue-filing/SKILL.md b/.claude/skills/gap-issue-filing/SKILL.md new file mode 100644 index 0000000..e56a65b --- /dev/null +++ b/.claude/skills/gap-issue-filing/SKILL.md @@ -0,0 +1,115 @@ +--- +name: gap-issue-filing +description: Turn unfiled rows in reports/gaps.tsv into GitHub issues using the mapping_gap template, without duplicating existing issues, then update the row's status/repo_issue columns. Invoke when asked to file logged mapping gaps as issues, clear the gaps.tsv backlog, or check which gaps still need one. +--- + +You take rows already logged in `reports/gaps.tsv` — cases where matching a +SOULCAP cell type to CL broke down — and turn the ones that aren't tracked on +GitHub yet into real issues, using the existing `mapping_gap` template so they +stay consistent with issues #12–#14. See [CLAUDE.md](../../../CLAUDE.md) for +repo conventions and [ROADMAP.md](../../../ROADMAP.md) for how gaps relate to +the CL term corrections table. + +`gaps.tsv` is the durable record; GitHub issues are the actionable, triageable +copy. This skill keeps the two in sync — it never replaces `gaps.tsv` as the +source of truth. + +## When to invoke + +The user asks to file gaps as issues, clear the `gaps.tsv` backlog, or check +how many logged gaps still lack a tracking issue. + +## Tools + +- `reports/gaps.tsv` — the source rows. Columns: `soulcap_abbreviation`, + `soulcap_full_name`, `gap_type`, `description`, `related_cl_ids`, + `evidence`, `status` (`open` / `filed_as_issue`), `repo_issue`, + `date_logged`. +- `.github/ISSUE_TEMPLATE/mapping_gap.yml` — the template whose fields map + directly onto `gaps.tsv` columns: `soulcap_abbreviation` → title, `gap_type` + → the dropdown, `description` + `related_cl_ids` + `evidence` → the + matching body fields. +- `gh issue list` / `gh issue create` — via Bash. This repo is + `Cellular-Semantics/SOULCAP_CL_Mapping` (confirm with `gh repo view` if the + remote is ever ambiguous). +- `Edit` — to update `gaps.tsv`'s `status`/`repo_issue` columns once an issue + is filed. + +## Step 1 — find what's actually unfiled + +Read `reports/gaps.tsv` and list every row where `status` is `open` (not +`filed_as_issue`). Note two rows sharing a `soulcap_abbreviation` group (e.g. +`NK1 / NK3`) file as **one** issue, matching how the row itself is structured +— don't split a single row into multiple issues. + +## Step 2 — check for an existing issue first + +Before filing, search for a plausible duplicate: + +```bash +gh issue list --search " in:title" --state all +gh issue list --label gap --state all +``` + +Some gaps already have a related, non-`gap`-labelled issue (e.g. the +monocyte/B-cell axiom-gap rows reference issue #12 in their `description` even +though #12 itself is filed under a different title). Read the row's +`description` and `evidence` columns for an existing issue number before +assuming none exists — filing a duplicate is worse than leaving a row open one +more day. + +## Step 3 — confirm the batch with the user before filing + +List the rows you intend to file (abbreviation + one-line description) and get +explicit confirmation before running `gh issue create` — this creates public, +visible state (issues, notifications to watchers) that's easy to create but +tedious to clean up if wrong. Do not file silently in a loop. + +## Step 4 — file each issue + +For each confirmed row, create the issue from the template's own field +structure — reproduce it as a plain markdown body (the `gh issue create +--template` flag targets local `.github/` templates inconsistently across `gh` +versions; writing the body directly from the YAML fields is more reliable): + +```bash +gh issue create \ + --title "[gap] : " \ + --label gap \ + --body "$(cat <<'EOF' +**SOULCAP abbreviation:** () + +**Gap type:** + +**Description:** + + +**Related CL ID(s):** + +**Evidence:** + +EOF +)" +``` + +## Step 5 — write the result back to gaps.tsv + +For each filed issue, edit its `gaps.tsv` row: + +- `status`: `open` → `filed_as_issue` +- `repo_issue`: `(not yet filed)` → the issue URL `gh issue create` printed + +Do this immediately after each successful `gh issue create` — don't batch it +to the end, so a failure partway through the batch doesn't leave filed issues +unrecorded. + +## Known limitations + +- This only closes the loop one direction (gap → issue). It does not detect + when a filed issue has since been closed/resolved upstream — that's + `roadmap-status-sync`'s job for the CL term corrections table, and isn't yet + extended to `gaps.tsv` rows with `status=filed_as_issue`. +- A `sheet_data_issue` row (a typo/malformed string in the master Google + Sheet) still can't be *fixed* here — filing the issue documents it, but the + actual correction still has to happen in the Sheet per + [CLAUDE.md](../../../CLAUDE.md)'s data-flow rules. diff --git a/.claude/skills/mapping-audit/SKILL.md b/.claude/skills/mapping-audit/SKILL.md new file mode 100644 index 0000000..7bb070b --- /dev/null +++ b/.claude/skills/mapping-audit/SKILL.md @@ -0,0 +1,138 @@ +--- +name: mapping-audit +description: Cross-check curated SOULCAP→CL mappings against current CL marker axioms and literature evidence to catch drift, unsupported confidence, or mistyped broad/exact matches — the Milestone 3 deliverable, run today as a drift/evidence audit even though the Sheet hasn't yet gained the broad/exact + comment columns the milestone originally specified. Invoke when asked to audit curated CL mappings, check Milestone 3 progress, or re-verify candidate_cl_mappings.sssom.tsv after a CL or SOULCAP sheet update. +--- + +You re-verify mappings that were already curated in +[reports/candidate_cl_mappings.md](../../../reports/candidate_cl_mappings.md) +and exported to +[reports/candidate_cl_mappings.sssom.tsv](../../../reports/candidate_cl_mappings.sssom.tsv), +checking whether the evidence that justified each one still holds. See +[ROADMAP.md](../../../ROADMAP.md) Milestone 3, which this implements in +reduced form: the milestone was scoped assuming the Google Sheet would gain +dedicated broad/exact-match and comment columns first, blocking it entirely. +Those columns would sharpen *curator intent* capture, but the audit itself — +"does the evidence for this mapping still check out?" — doesn't strictly need +them. Say explicitly, in whatever you produce, that this is the +evidence/drift half of M3, not the full milestone as originally scoped. + +## When to invoke + +The user asks to audit curated CL mappings, wants a Milestone 3 progress +check, or just re-ran `soulcap-cl-pro` (CL's marker axioms can change between +Ubergraph syncs) or `soulcap-sync` (the SOULCAP sheet can change too) and +wants to know if any existing mapping is now stale. + +## Tools + +- `src/soulcap_cl_mapping/sssom_export.py`'s `CURATED_MAPPINGS` table — the + actual curated entries, each with `abbreviation`, `cl_id`, `cl_label`, + `match_type` (`Exact`/`Broad`), optional `evidence_override`, `uncertain`, + and `note`. This is the ground truth for *what was decided*; the generated + `.sssom.tsv` is its rendered output. +- `sssom_export.load_assertion_status()` / `classify_evidence()` — classify a + CL ID's current marker-axiom support as `confirmed` (directly asserted), + `inferred_only`, or `no_marker_axiom`, from + `reports/cl_pro_relationships.tsv`. +- `reports/literature/*.md` and `reports/pro_marker_species_support.tsv` — the + literature side of the evidence a mapping might rely on, especially for + species-specific marker claims. +- `uv run soulcap-match --req-excl ... --ideal-excl ... --req-pheno ... + --ideal-pheno ... --parent "..."` — re-run a SOULCAP profile's marker-axiom + scoring against the *current* CL data to see if the picture has changed + since the mapping was curated. +- `uv run soulcap-lookup --id CL:XXXXXXX` — confirm a term hasn't been + renamed, deprecated, or replaced since curation. + +## Step 1 — recompute evidence classification for every curated entry + +```bash +uv run python -c " +from soulcap_cl_mapping.sssom_export import CURATED_MAPPINGS, load_assertion_status, classify_evidence +status = load_assertion_status() +for e in CURATED_MAPPINGS: + evidence = e.get('evidence_override') or classify_evidence(e['cl_id'], status) + print(e['abbreviation'], e['cl_id'], e['match_type'], evidence, e.get('uncertain', False)) +" +``` + +This reproduces exactly what `soulcap-sssom` computes today. The audit's job +is to question it, not just print it — for each row, ask: + +1. **Does `match_type` still make sense given `evidence`?** An `Exact` match + resting on `no_marker_axiom` (lexical-only) is structurally weaker than its + label implies — flag it, even though `sssom_export.py` already discounts + its numeric confidence (0.55 vs. 0.9 for a confirmed Exact match). The + *label* still reads as "Exact" to anyone skimming `candidate_cl_mappings.md`. +2. **Has the CL side moved?** Re-fetch the CL ID with `soulcap-lookup --id` — + check the label and definition still match what `candidate_cl_mappings.md` + describes. CL is actively maintained (see issues #12–#14, all filed against + terms this project maps to); a maintainer accepting one of those upstream + fixes changes the term's markers/definition/label out from under a mapping + made before the fix landed. +3. **Does literature actually back a species-specific claim the mapping + relies on?** Cross-check against `reports/pro_marker_species_support.tsv` + — if a mapping leans on a marker that TSV records as + `insufficient_evidence` or a different species than SOULCAP's row assumes, + that's a real finding, not noise. +4. **Was it marked `uncertain` for a reason that's since been resolved (or + gotten worse)?** Re-read the `note` field and check whether the ambiguity + it describes is still accurate. + +## Step 2 — re-score against current marker axioms for anything suspicious + +When Step 1 flags a row, re-run the actual profile (pull the four marker +columns for that `abbreviation` from `data/marker_combinations.csv`) through +`soulcap-match` and compare the result to what's recorded in +`candidate_cl_mappings.md`. A new `contradictions` entry or a `disqualified` +result that wasn't there before is the clearest possible signal something +changed. + +## Step 3 — write findings, don't silently fix + +This audit's output is a report, not an automatic rewrite of curated mappings +— changing a curated match_type or CL ID is `soulcap-cl-matching`'s job (or a +human decision), not this skill's. Write findings to a new +`reports/mapping_audit.md`, one entry per flagged mapping: + +```markdown +## — → `CL:XXXXXXX` + +**Curated as:** , evidence=, confidence= + +**Finding:** + +**Suggested action:** +``` + +If this is the first run, add `reports/mapping_audit.md` to +[CLAUDE.md](../../../CLAUDE.md)'s repository layout table and to +[ROADMAP.md](../../../ROADMAP.md) Milestone 3 as its (partial) deliverable — +new artifacts get linked from both, per repo convention. + +## Step 4 — flag anything that's actually a full M3 blocker + +If a finding can't be resolved without the sheet's still-missing broad/exact + +comment columns (e.g. a curator's original *intent* is ambiguous and the +mapping's own `note` doesn't disambiguate it), don't force an answer — log it +as exactly the kind of case that's still blocked, so the roadmap accurately +shows partial progress plus a real remaining blocker rather than looking +either fully done or fully stuck. + +## Known limitations + +- This audits `CURATED_MAPPINGS` (the signed-off subset, currently 87 of 127 + SOULCAP rows) — it says nothing about rows that don't have a curated + mapping yet at all. That's Milestone 4's remaining work, not this skill's. +- `classify_evidence()` only sees `reports/cl_pro_relationships.tsv`, which is + itself a snapshot from the last `soulcap-cl-pro` run against Ubergraph — run + that first if CL upstream has plausibly changed (e.g. one of issues #12–#14 + was recently merged) before trusting a "nothing changed" result. +- This is genuinely a reduced version of Milestone 3 as scoped in + `ROADMAP.md` — it catches drift and re-validates evidence, but it cannot + check curator intent (was this *meant* to be broad or exact?) the way the + sheet's planned dedicated columns would. Don't report a clean audit run as + "Milestone 3 done." diff --git a/.claude/skills/roadmap-status-sync/SKILL.md b/.claude/skills/roadmap-status-sync/SKILL.md new file mode 100644 index 0000000..7b7a949 --- /dev/null +++ b/.claude/skills/roadmap-status-sync/SKILL.md @@ -0,0 +1,79 @@ +--- +name: roadmap-status-sync +description: Reconcile ROADMAP.md's milestone status markers (⬜/🟡/✅/⛔) against what's actually committed in the repo, and rewrite whichever are stale. Invoke when asked to update/check the roadmap's status, before reporting project progress to someone outside the repo, or whenever a milestone's deliverable changes. +--- + +You check whether [ROADMAP.md](../../../ROADMAP.md)'s status markers still +match reality, and fix them when they don't. This exists because they went +stale once already: Milestones 1, 2, and 4 sat marked ⬜ "not started" for +weeks after real deliverables had already landed, and nobody caught it until +an unrelated audit. Don't let that repeat — the roadmap is what gets shown to +people outside this repo (advisors, collaborators); it should never undersell +or oversell progress. + +## When to invoke + +The user asks to check or update `ROADMAP.md`'s status, wants an accurate +progress summary before a meeting/report, or just finished work that plausibly +changes a milestone's completion state. + +## Tools + +- `ROADMAP.md` — the file being audited. Status legend: ⬜ not started · + 🟡 in progress · ✅ done · ⛔ blocked. +- `uv run soulcap-sync` — re-pull the Google Sheet before checking anything + that depends on its current column set (this is a network call and + overwrites the gitignored `data/` cache — safe, but mention you're doing it). +- File/row counts under `marker_mappings/`, `reports/`, `reports/literature/`. +- `gh issue view ` — for the CL term corrections table, whose "Status" + column tracks upstream `obophenotype/cell-ontology` issues that this repo + doesn't control the resolution of. + +## Step 1 — recompute each milestone's real status + +Don't infer from memory or from the current emoji — recompute from what's on +disk, every time: + +| Milestone | Evidence to check | How to read it | +|---|---|---| +| M1 — marker → protein → gene | `marker_mappings/marker_protein_gene.csv` exists and has rows | Empty/missing → ⬜. Has rows but visibly incomplete (spot-check a few marker tokens from `data/marker_combinations.csv` against it) → 🟡. Covers essentially all distinct tokens → ✅. | +| M2 — literature support | Count `reports/literature/*.md` files against the distinct `Category` values in `data/citation_mgr.csv` (re-sync first if `data/` looks stale) | 0 files → ⬜. Some but not all categories covered → 🟡 (state the fraction, e.g. "8/14"). All categories covered → ✅. | +| M3 — audit curated mappings | Whether the Google Sheet now has dedicated broad/exact-match and comment columns beyond today's `Type of Match` (assay-type, not CL-match-type), `OLS CL identifier`, and `CL Mapping Notes` — check the freshly-synced sheet's actual column headers, don't assume from the column *names* alone (`Type of Match` sounds relevant but is not the same field per the roadmap's own note) | Columns still absent → stays ⛔, but if the `mapping-audit` skill has since made a drift/evidence-based audit possible without those columns, say so explicitly rather than leaving it a flat "blocked with nothing happening." | +| M4 — candidate mappings | Row count in `reports/candidate_cl_mappings.sssom.tsv` (minus header) against total rows in `data/marker_combinations.csv` (minus header) | Partial coverage → 🟡 with the fraction. All SOULCAP rows covered (including documented "no reasonable match" cases logged in `gaps.tsv`, which count as resolved, not missing) → ✅. | +| CL term corrections table | `gh issue view ` for each row's linked repo issue, and the upstream `obophenotype/cell-ontology` issue if linked | If the upstream issue is closed/merged, the table's "Status" cell is stale — update it. | + +## Step 2 — diff against what the file currently says + +Read the current milestone headers (`## Milestone N — ... `) and the CL +term corrections table's Status column. List every mismatch between Step 1's +computed status and what's written, with the evidence for each. + +## Step 3 — confirm before rewriting anything non-trivial + +A pure emoji swap backed by unambiguous evidence (e.g. a deliverable file that +plainly didn't exist before now does) can be applied directly. Anything +judgment-based — 🟡 vs ✅ on a milestone that's "mostly" done, or whether a +partially-blocked milestone should flip to 🟡 — should be confirmed with the +user first, since this file represents the project to people outside it. + +## Step 4 — write the update + +Edit the milestone heading's emoji and, where useful, add a short parenthetical +with the evidence (e.g. `## Milestone 2 — Literature support for markers 🟡 +(8/14 categories)`) so the fraction doesn't silently go stale again the same +way the flat emoji did. Update the CL term corrections table's Status cell the +same way when an upstream issue has moved. + +## Known limitations + +- This only checks the four numbered milestones and the CL term corrections + table — it doesn't audit the "Cross-cutting dependencies" section, which is + qualitative by nature. +- M2's category list comes from `data/citation_mgr.csv`'s `Category` column, + which mixes true cell-type families (NK cell, B cell, monocyte, ...) with at + least one cross-cutting method category (`immunoprofiling`) that doesn't map + to a single `reports/literature/*.md` file — don't count it against M2's + denominator; use judgment on any other ambiguous category the same way. +- A "done" `data/` count is only as fresh as the last `uv run soulcap-sync` — + always re-sync before trusting M2/M3/M4 numbers if the last sync date is + unclear or more than a few days old. diff --git a/.gitignore b/.gitignore index 0a42741..03a0058 100644 --- a/.gitignore +++ b/.gitignore @@ -28,6 +28,8 @@ wheels/ # Test / coverage / type-check caches .pytest_cache/ +.test-runs/ +.uv-cache/ .ruff_cache/ .mypy_cache/ .coverage diff --git a/CLAUDE.md b/CLAUDE.md index 5a26548..9a57800 100644 --- a/CLAUDE.md +++ b/CLAUDE.md @@ -13,6 +13,21 @@ See [README.md](README.md) for the full overview and setup. ## Source of truth & data flow +**Mapping implementation update (2026-09-08):** The Sheet still owns source +definitions. Proposed mapping decisions now live in +`mappings/curated_mappings.tsv`, with permanent local IDs in +`mappings/soulcap_entities.tsv`; see [mappings/README.md](mappings/README.md). +`CURATED_MAPPINGS` is only a compatibility view loaded from that TSV. +`soulcap-sssom` generates the candidate Markdown and SSSOM from the same rows, +with per-profile marker evidence and input hashes. Never edit the generated +candidate report or duplicate decisions in Python. Historical narrative and +the sheet-confirmation note are preserved in +`reports/candidate_cl_mappings_narrative.md`. Fixed confidence tiers are retired; +curator, lexical, literature, and marker evidence remain separate. This +supersedes older descriptions below of hand-synchronized mappings and +term-wide confidence. Validation, token extraction, and scoring share the +AST in `marker_syntax.py`, compiled/evaluated by `phenotype.py`. + - The **master data is a Google Sheet**, not anything in this repo: - Key tabs: @@ -45,10 +60,10 @@ See [README.md](README.md) for the full overview and setup. | [ROADMAP.md](ROADMAP.md) | Planned work / milestones and their deliverables and dependencies. | | [Notes.md](Notes.md) | Scratch notes on data sources + a marker-syntax quick reference. | | [MARKER_SYNTAX.md](MARKER_SYNTAX.md) | **Canonical spec** of the marker expression language (human-readable guide + EBNF). Cite this for anything parsing/validating marker strings. | -| [reports/](reports/) | Analysis reports. `marker_string_issues.md` is the curated review; `marker_validation.md` is **auto-generated** by the EBNF validator on each sync. `cl_pro_relationships.md`/`.tsv` are **auto-generated** by `soulcap-cl-pro` from Ubergraph. `cl_term_issues.md` tracks proposed CL corrections found during mapping work. `candidate_cl_mappings.md` is the Milestone 4 deliverable — proposed SOULCAP→CL mappings with rationale and evidence. `candidate_cl_mappings_batch.tsv`/`candidate_cl_mappings_agreement.tsv` are **auto-generated** by `soulcap-match --batch [--lexical]` (issue #6) — a marker-axiom-only pass and a marker/lexical agreement pass across every SOULCAP cell type; treat as an unreviewed draft shortlist (conflicts must be checked), not curated output. `candidate_cl_mappings.sssom.tsv` is **auto-generated** by `soulcap-sssom` from the curated `CURATED_MAPPINGS` table in `sssom_export.py` (kept in sync by hand with `candidate_cl_mappings.md`) — standard SSSOM format, with `confidence`/`comment` derived from whether the match is backed by a directly-asserted CL marker axiom, an inferred-only one, or none at all (lexical/name match only). `gaps.tsv` is a curated, hand-maintained log of cases where SOULCAP has no reasonable CL match, CL conflicts with a marker panel, CL has an axiom gap, or the sheet itself has a data problem — separate from the mapping table; matching GitHub issues use the `gap` label (`.github/ISSUE_TEMPLATE/mapping_gap.yml`). `pro_marker_species_support.tsv` is the issue #11 deliverable — for each (CL cell type, general PRO marker) pair SOULCAP's mappings actually touch, whether literature supports the marker as human, mouse, or both, or `insufficient_evidence`; built by the `pro-marker-species-support` skill, every quote verified verbatim against its source before writing. New reports go here. `reports/citation_traversal/` holds gitignored, regenerable snippet caches + summaries from the `citation-traversal` skill. | +| [reports/](reports/) | Analysis reports. `marker_string_issues.md` is the curated review; `marker_validation.md` is **auto-generated** by the EBNF validator on each sync. `cl_pro_relationships.md`/`.tsv` are **auto-generated** by `soulcap-cl-pro` from Ubergraph. `cl_term_issues.md` tracks proposed CL corrections found during mapping work. `candidate_cl_mappings.md` is the Milestone 4 deliverable — proposed SOULCAP→CL mappings with rationale and evidence. `candidate_cl_mappings_batch.tsv`/`candidate_cl_mappings_agreement.tsv` are **auto-generated** by `soulcap-match --batch [--lexical]` (issue #6) — a marker-axiom-only pass and a marker/lexical agreement pass across every SOULCAP cell type; treat as an unreviewed draft shortlist (conflicts must be checked), not curated output. `candidate_cl_mappings.sssom.tsv` is **auto-generated** by `soulcap-sssom` from the curated `CURATED_MAPPINGS` table in `sssom_export.py` (kept in sync by hand with `candidate_cl_mappings.md`) — standard SSSOM format, with `confidence`/`comment` derived from whether the match is backed by a directly-asserted CL marker axiom, an inferred-only one, or none at all (lexical/name match only). `gaps.tsv` is a curated, hand-maintained log of cases where SOULCAP has no reasonable CL match, CL conflicts with a marker panel, CL has an axiom gap, or the sheet itself has a data problem — separate from the mapping table; matching GitHub issues use the `gap` label (`.github/ISSUE_TEMPLATE/mapping_gap.yml`). `pro_marker_species_support.tsv` is the issue #11 deliverable — for each (CL cell type, general PRO marker) pair SOULCAP's mappings actually touch, whether literature supports the marker as human, mouse, or both, or `insufficient_evidence`; built by the `pro-marker-species-support` skill, every quote verified verbatim against its source before writing. `fall_2026_sprint_backlog.md` is the sprint-level breakdown of [ROADMAP.md](ROADMAP.md)'s Fall 2026 (Oct–Dec) working plan, prepared for Dr. Diehl — hand-maintained, not regenerable; update it as items complete or scope is renegotiated, don't treat it as a generated report. New reports go here. `reports/citation_traversal/` holds gitignored, regenerable snippet caches + summaries from the `citation-traversal` skill. | | `src/soulcap_cl_mapping/` | All Python code. `sync_sheets.py` → `soulcap-sync`; `marker_syntax.py` → `soulcap-validate` (EBNF validator); `snippet_cache.py` → `soulcap-cache`; `report_validator.py` → `soulcap-validate-report`; `cl_pro.py` → `soulcap-cl-pro` (CL→PR relationships via Ubergraph SPARQL); `cl_match.py` → `soulcap-match` (marker-axiom + lexical CL candidate scoring, single-profile or `--batch`); `oak_match.py` → `soulcap-oak-match` (OAK sqlite-backed lexical/synonym CL search — downloads/caches a local CL database on first use, ~100MB); `sssom_export.py` → `soulcap-sssom` (curated mappings → SSSOM TSV, with confidence derived from CL marker-axiom assertion status); `pro_species_support.py` (scopes CL PRO markers needing species-specificity literature support — no CLI, called as a library from the `pro-marker-species-support` skill); `europepmc_search.py` → `soulcap-europepmc` (free, keyless Europe PMC search — fallback literature source when the Asta MCP server isn't reachable). | | `tests/` | Unit tests (mirror `src/` layout). | -| `.claude/skills/` | Project skills — see [citation-traversal](.claude/skills/citation-traversal/SKILL.md), `ontology-term-lookup`, and [pro-marker-species-support](.claude/skills/pro-marker-species-support/SKILL.md). | +| `.claude/skills/` | Project skills — see [citation-traversal](.claude/skills/citation-traversal/SKILL.md), `ontology-term-lookup`, [pro-marker-species-support](.claude/skills/pro-marker-species-support/SKILL.md), [gap-issue-filing](.claude/skills/gap-issue-filing/SKILL.md), [roadmap-status-sync](.claude/skills/roadmap-status-sync/SKILL.md), and [mapping-audit](.claude/skills/mapping-audit/SKILL.md). | | `.claude/hooks/` | Claude Code hooks. `validate_report_quotes.py` is a PreToolUse guard that blocks writing a citation-traversal report whose quotes aren't verbatim in the snippet cache. | | `data/` | Gitignored cache of the synced sheet (CSV + xlsx). | | `pyproject.toml` | Project metadata, deps, and the CLI entry points. | @@ -125,6 +140,22 @@ exact ontology labels via OLS4 — prefer it for term resolution. reachable) or the keyless `soulcap-europepmc` fallback, writing verdicts to `reports/pro_marker_species_support.tsv`. The issue #11 workflow. See [SKILL.md](.claude/skills/pro-marker-species-support/SKILL.md). +- **`gap-issue-filing`** — turn unfiled rows in `reports/gaps.tsv` into GitHub + issues from the `mapping_gap` template, checking for duplicates first and + writing the resulting issue URL back into the row. See + [SKILL.md](.claude/skills/gap-issue-filing/SKILL.md). +- **`roadmap-status-sync`** — recompute each `ROADMAP.md` milestone's status + from what's actually on disk (deliverable files, row counts, linked issue + states) and correct any stale ⬜/🟡/✅/⛔ marker, so the roadmap never + undersells or oversells progress again. See + [SKILL.md](.claude/skills/roadmap-status-sync/SKILL.md). +- **`mapping-audit`** — re-verify curated SOULCAP→CL mappings in + `candidate_cl_mappings.sssom.tsv` against current CL marker axioms and + literature evidence, catching drift or a `match_type` that no longer fits + its evidence tier. The Milestone 3 workflow, run today in reduced form + (evidence/drift only, not curator-intent capture) pending the Sheet gaining + its planned broad/exact + comment columns. See + [SKILL.md](.claude/skills/mapping-audit/SKILL.md). > Local RAG indexing (a `local-paper-index` skill) was trialled here but removed > to avoid confusion — it was copied verbatim from `atlas_chat` and unused. diff --git a/MARKER_SYNTAX.md b/MARKER_SYNTAX.md index 85e004c..8eb0c00 100644 --- a/MARKER_SYNTAX.md +++ b/MARKER_SYNTAX.md @@ -198,3 +198,22 @@ sheet contains entries that violate it and should be corrected at source (the without a trailing `-`; confirm which cell types intend the negation. A parser built from §2 can be used to lint the sheet for these. + +## 4. Implementation semantics + +`marker_syntax.parse_expression` returns the shared immutable AST used by +validation, token extraction, and matching. Malformed expressions are never +partially scored. Unqualified markers remain unknown rather than acquiring +an assumed sign. + +The matcher retains low, intermediate, and high levels. `positive` CL evidence +does not establish a specific expression level. The documented special `+/-` +qualifier means low or undetectable; other slash qualifiers retain each listed +alternative. Group `-` negates the entire Boolean condition, so "not high" +does not imply "negative". Unknown evidence stays unknown under negation. + +The grammar permits group-level `hi/lo/int` and slash qualifiers but does not +define their biological meaning on compound groups. Such expressions are +retained in the AST and flagged as needing clarification before scoring. +Boolean expansion is capped at 256 clauses to reject excessively complex +expressions explicitly. diff --git a/README.md b/README.md index 7eb53a9..bd114d2 100644 --- a/README.md +++ b/README.md @@ -30,6 +30,13 @@ controlled vocabulary of cell types. It is widely used for annotating single-cell datasets and is a standard reference for cell type identity across the life sciences. +## Planning + +Milestones and their status live in [ROADMAP.md](ROADMAP.md). The current +semester's sprint-level breakdown (sub-tasks, acceptance criteria, and what's +blocked on someone outside the repo) is +[reports/fall_2026_sprint_backlog.md](reports/fall_2026_sprint_backlog.md). + ## Setup ### 1. Clone this repo @@ -77,6 +84,175 @@ startup and expands `${ASTA_API_KEY}` into the `x-api-key` header in it is the only place the secret lives. Restart Claude Code after editing it so the key is picked up. +## Unified audit dashboard + +Generate an offline dashboard from the local data and mapping registries: + +```bash +uv run soulcap-audit +``` + +Open [reports/audit_dashboard.html](reports/audit_dashboard.html) in a browser. +It includes searchable, filterable review tables for SOULCAP entities, proposed +CL targets, prioritized findings, marker coverage, gaps, species evidence, and +input provenance. Expand a row to inspect its evidence and source references. +No server, network calls, or additional dashboard dependencies are required. + +The command also writes [audit_summary.md](reports/audit_summary.md) and +[audit_data.json](reports/audit_data.json). Use `--root PATH` for another repository +snapshot, `--out-dir PATH` for another output directory, or `--strict` to return +exit code 1 when error findings exist (reports are still generated). + +The audit recomputes marker evidence without changing source data or mappings. +Missing inputs are reported as unavailable, not zero. Local hashes and export +evidence are checked for drift; upstream freshness is not checked. Historical +agreement reports and family-level gaps are not silently joined to entity IDs. +Mapping proposals and marker compatibility do **not** establish equivalence. + +## Matcher evaluation + +```bash +uv run soulcap-evaluate +uv run soulcap-audit +``` + +The first command writes `reports/matcher_evaluation.md`, `.json`, and `.tsv`; +the second refreshes the dashboard's evaluation view. Evaluation is offline and +uses the production matcher unchanged, including its name hints and tie order. +It measures CL target retrieval, not the correctness of an equivalence relation. + +Existing mapping proposals automatically form a **provisional agreement** cohort. +The separate [benchmark TSV](mappings/matcher_benchmark.tsv) starts empty: no +proposal is automatically certified as ground truth. Add manually reviewed cases +with columns `subject_id`, `acceptable_cl_ids` (`|`-separated alternatives), +`match_type` (`Exact`, `Broad`, `Narrow`, `Related`), `review_status` (`reviewed` +or `provisional`), and `evidence_reference` (required for reviewed cases). +One case represents a subject/relation within a cohort. An explicit provisional +case overrides that subject/relation's proposal-derived targets. Review statuses +in the proposal registry never automatically promote cases to the reviewed cohort. + +Top-1/3/5 hit rates and mean reciprocal rank include every cohort case in their +denominators, with zero credit for unscorable profiles and absent targets. Empty +cohorts report unavailable metrics. Best/worst tie bounds expose ordering +sensitivity; disqualified candidates are retained and flagged, not endorsed. +Exact/Broad/Narrow/Related results are reported separately. Profile drift requires +review before scoring; benchmark targets must be re-reviewed if definitions change. + +To compare against a saved JSON baseline without overwriting it: + +```bash +uv run soulcap-evaluate --baseline reports/matcher_evaluation.json --out-dir reports/evaluation-next +``` + +Use `--root PATH` or `--benchmark PATH` for other snapshots/case files. The JSON +records input and matcher-source hashes. Input/configuration drift marks baseline +comparisons non-equivalent; rank changes are descriptive, not significance tests. +The dashboard reads the default report location and checks local hashes; a custom +benchmark is unverified unless its contents match the default benchmark. +Missing or malformed required inputs fail before reports are written. + +## Alias/protein-aware matching and local candidate coverage + +The enhanced modes are explicit opt-ins; omitting the flags preserves the legacy +marker scorer. They do not change curated mapping decisions. Candidate scoring, +mapping evidence, SSSOM export, and the audit now share the same resolver when +`--marker-map` is explicitly enabled for each command; defaults remain legacy. + +```bash +uv run soulcap-match --batch --marker-map marker_mappings/marker_protein_gene.csv --term-cache reports/cl_lexical_cache.json --batch-out reports/candidate_cl_mappings_enhanced.tsv +uv run soulcap-evaluate --marker-map marker_mappings/marker_protein_gene.csv --term-cache reports/cl_lexical_cache.json --baseline reports/matcher_evaluation_baseline.json +uv run soulcap-audit +``` + +Marker resolution uses explicit registry aliases and exact PRO identity, preserving +positive/negative and expression-level distinctions. Its sibling policy file, +[marker_resolution.tsv](marker_mappings/marker_resolution.tsv), must classify +every normalized registry marker as `single_protein`, `protein_family`, `complex`, +`reagent_gate`, or `unresolved`, with an explicit `allow`/`withhold` protein policy, +rationale, source reference, and SHA-256 of the original registry rows. Runtime +resolution does not interpret free-text notes to decide protein identity. Only +single-protein policies with exactly one PRO ID can allow protein expansion. +Missing, conflicting, or stale policies fail rather than silently guessing. + +Initial policies preserve existing single-PRO representations as computational +assumptions, not biological sign-offs. CD3, CD8, CD15, CD16, and MR1 have conservative +holds because the registry's component/family/reagent representation needs review; +no source identifiers have been changed. Complex, family, and reagent policies +cannot inherit a component-protein assertion through an alias. An explicit +same-marker assertion without a component PRO remains distinguishable evidence. +Related/broad ontology synonyms do not imply identity. No gene-symbol, +cross-species, or protein-hierarchy equivalence is inferred. + +Compatible duplicate aliases with the same allowed PRO identity are merged; +conflicting owners remain unresolved. Identical semantic clauses count once across +required/ideal columns (required takes precedence), while contradictory signs, +different levels, and distinct OR constraints remain separate. Original source +spelling is retained for evidence display. After a registry edit, review and update +the affected policy and its fingerprint; do not simply refresh hashes to bypass review. +Resolution paths are recorded in candidate evidence; withheld cases are listed in +evaluation JSON under `marker_resolution_issues`. + +Isolate resolver changes from lexical coverage and inspect detailed differences: + +```bash +uv run soulcap-resolution-audit +uv run soulcap-evaluate --out-dir reports/resolver-refinement/legacy +uv run soulcap-evaluate --marker-map marker_mappings/marker_protein_gene.csv --out-dir reports/resolver-refinement/enhanced --baseline reports/resolver-refinement/legacy/matcher_evaluation.json +uv run soulcap-sssom --marker-map marker_mappings/marker_protein_gene.csv --out reports/resolver-refinement/enhanced.sssom.tsv +uv run soulcap-audit --marker-map marker_mappings/marker_protein_gene.csv --out-dir reports/resolver-refinement/audit +``` + +The [resolution audit](reports/marker_resolution_audit.md) includes per-marker +gains/losses and JSON with per-mapping before/after evidence. Case-normalized +resolution covers 73 marker groups from 75 registry rows. Comparison runs use +identical source/axiom snapshots and no lexical expansion; modes intentionally +differ, so the general evaluation comparison flags them as non-equivalent runs. +Enhanced SSSOM export requires a separate output path to protect the default export. +The audit explicitly distinguishes export/audit mode differences from evidence drift. + +The local lexical cache contains active CL labels and exact synonyms from a local +OAK SQLite snapshot, with a source-database hash. To rebuild from your own snapshot: + +```bash +uv run soulcap-cache-terms --database PATH_TO_CL_DB --out reports/cl_lexical_cache.json +``` + +No network services are contacted. The cache extraction timestamp is not an +ontology release date or upstream freshness check. Lexical candidates use the source +full name (abbreviation fallback), never expected mapping targets: normalized exact +matches first, then word overlap of at least 0.5, limited to 20 candidates per row. +They are unioned with marker candidates and scored with the existing weights; +missing axioms remain unknown, not supporting evidence. Invalid/no-qualified-marker +profiles remain unscored. Single-profile CLI searches use `--subset` or `--parent`. + +The evaluation distinguishes targets absent from the global index from targets +present but not retrieved for a row. Candidate-source labels, lexical evidence, +and protein-resolution paths are exported in batch TSV and evaluation JSON. +The original baseline is preserved in `reports/matcher_evaluation_baseline.json`; +controlled runs are in `reports/evaluation-legacy/` and `reports/evaluation-alias/`. +Mode/input changes make comparisons descriptive rather than equivalent-condition +regression tests. Broader coverage alone does not establish better ranking. + +## Offline regression triage + +```bash +uv run python -m soulcap_cl_mapping.regression_triage +``` + +Writes [regression_triage.md](reports/regression-triage/regression_triage.md), +JSON evidence, and a per-case TSV under `reports/regression-triage/`. Optional +`--root` and `--out-dir` select another snapshot or report location. This is a +diagnostic tool, not a production matcher mode: it does not change policies, +mapping decisions, scoring weights, or existing audit/evaluation reports. + +All eight combinations separate enhanced token-evidence additions, legacy +token-evidence removals, and semantic-clause deduplication. Candidates, their order, +source profiles, and scoring weights remain fixed; no lexical search is run. +Both endpoints must reproduce the production matchers. The report includes ties, +changed expected-target and competitor evidence, policy references, pairwise +factor effects, and input/code hashes. These computational findings do not validate +the provisional targets or establish biological correctness of a policy. + ## Input data The single source of truth is a @@ -138,6 +314,18 @@ uv run soulcap-cl-pro --endpoint # use a different SPARQL endpoint ## Candidate CL matching (`soulcap-match`) +Validation, token extraction, and scoring share one phenotype AST. Boolean +negation and expression levels are preserved. Malformed profiles are flagged +without producing marker candidates; missing axioms remain unknown. Batch +outputs include stable `subject_id` and specimen context so duplicate +abbreviations cannot be merged accidentally. Token regeneration also refuses +invalid source expressions. See [MARKER_SYNTAX.md](MARKER_SYNTAX.md#4-implementation-semantics). + +The committed agreement TSV predates this parser/identity migration. Regenerate +it with `soulcap-match --batch --lexical` before comparing it with current +batch results; cached old lexical results cannot safely distinguish all +duplicated source rows. + Ranks CL terms against a SOULCAP marker profile, scored from `cl_pro_relationships.tsv`. Single-profile mode (paste the four marker columns for one cell type): @@ -181,24 +369,45 @@ more-specific subtype variants). Downloads and caches a local CL database ## SSSOM mapping export (`soulcap-sssom`) -Exports the curated Milestone 4 mapping decisions (`CURATED_MAPPINGS` in -`sssom_export.py`, kept in sync by hand with `candidate_cl_mappings.md`) as a -standard [SSSOM](https://mapping-commons.github.io/sssom/) TSV, instead of -writing OWL axioms directly: +The decision source is [mappings/curated_mappings.tsv](mappings/curated_mappings.tsv). +The [entity registry](mappings/soulcap_entities.tsv) supplies permanent local +SOULCAP IDs; [registry documentation](mappings/README.md) explains identity +resolution, migration aliases, review status, and evidence fields. ```bash -uv run soulcap-sssom # -> reports/candidate_cl_mappings.sssom.tsv +uv run soulcap-sssom ``` -`confidence` and `comment` are derived automatically — not hand-typed — from -whether CL directly asserts the matched marker axiom(s), only has them by -inference, or has no marker axiom for the term at all. This is what lets the -output distinguish "CL confirms this" from "this is only supported by -inferred markers," per row. - -SSSOM is the final output here, deliberately: these are proposed mappings for -human review, not assertions this repo makes unilaterally. This module does -not convert them into OWL logical axioms or merge them into CL. +This generates `reports/candidate_cl_mappings.sssom.tsv`, the readable +`reports/candidate_cl_mappings.md`, and an input-hash provenance sidecar. +The original detailed rationale, including sheet-confirmation notes, is +preserved in [the narrative archive](reports/candidate_cl_mappings_narrative.md). + +Evidence is evaluated against each source phenotype: required-marker matches, +contradictions, unknown clauses, ideal-marker conflicts, and direct versus +inferred support. Current sheet confirmation, lexical evidence, and literature +evidence remain separate. Missing or malformed profiles are explicitly flagged. +Numeric confidence is omitted pending calibration, and all mappings remain +proposals requiring review. Marker compatibility alone does not prove that two +cell-type definitions are equivalent. + +Use `--source`, `--mappings`, `--tsv`, `--out`, and `--review-out` to +select inputs and output locations. Existing abbreviation-based subject IDs +are retained in the registry's `legacy_subject_id` column. + +## Evidence-reviewed regression follow-up + +The [steps 3–6 follow-up](reports/regression-followup/README.md) reviews the +three lost top-five targets, retains a narrowly scoped whole-CD8 surface +assertion in opt-in policy mode, and records controlled before/after results. +Top-five provisional agreement remains 16/80; this is not a validated ranking +improvement. Two proposed mapping relations lack sufficient support. + +[Resolver constraint examples](mappings/marker_assertion_benchmark.json) run +as regression tests. A [five-entity prospective reserve](mappings/benchmark_reserve.json) +is kept separate from development proposals and identical profiles. It still +needs independent annotation; no gold-standard mappings or held-out accuracy +are claimed. The report explains the remaining curator decisions. ## ROBOT ontology QC diff --git a/ROADMAP.md b/ROADMAP.md index e0101d6..bc9587f 100644 --- a/ROADMAP.md +++ b/ROADMAP.md @@ -1,15 +1,48 @@ # Roadmap +## Matching pipeline improvements — implemented 2026-09-08 + +- Shared phenotype AST for validation, token extraction, and matching; + nested Boolean logic and expression levels are retained, and malformed + profiles are excluded from marker ranking. +- Permanent local entity IDs and a single curated mapping registry under + [mappings/](mappings/README.md), preserving all 80 existing proposals. +- Mapping-specific marker evidence, separate curator/lexical/literature + records, generated Markdown and SSSOM, and input-hash provenance. + Numeric confidence is omitted pending calibration. These implementation + changes do not complete biological review or certify exact matches. + +## Current local status — 2026-09-11 + +- 127 registered SOULCAP entities; **80 proposals covering 80 entities** and + **47 entities without proposals**. All 80 proposals still need review; these + are not 80 certified equivalent mappings. +- Unified audit dashboard, matcher evaluation harness, and opt-in alias/PRO + resolution plus offline lexical candidate coverage are implemented. +- No reviewed benchmark cases yet; evaluation measures provisional agreement, + not validated biological accuracy. +- Shared opt-in marker resolution now uses explicit fingerprinted policies across + matching, mapping evidence, audit, and SSSOM. Compatible alias owners merge and + duplicate semantic clauses are counted once. See the + [before/after resolution audit](reports/marker_resolution_audit.md); representation + policies and improved software checks do not certify biological equivalence. +- Counts below describe local artifacts. Older dated literature, sheet-schema, + and upstream issue statuses have not been reverified by this update. + Planned work for the SOULCAP ↔ Cell Ontology mapping project. See [CLAUDE.md](CLAUDE.md) for conventions and [README.md](README.md) for setup. The Google Sheet is the source of truth; pull with `uv run soulcap-sync` before working on any task. +For the Oct–Dec 2026 execution plan against these milestones — broken into +sprint-level sub-tasks, acceptance criteria, and who each item is blocked +on — see [reports/fall_2026_sprint_backlog.md](reports/fall_2026_sprint_backlog.md). + Status legend: ⬜ not started · 🟡 in progress · ✅ done · ⛔ blocked. --- -## Milestone 1 — Marker → protein → gene mappings ⬜ +## Milestone 1 — Marker → protein → gene mappings ✅ Map every marker token used in `Marker Combinations` to its protein and gene identifiers. @@ -28,6 +61,20 @@ identifiers. **Deliverable:** `marker_mappings/marker_protein_gene.csv` (a **tracked**, curated artifact — *not* part of the gitignored `data/` cache). +**Local status (2026-09-11):** all 75 registry marker tokens have a row; 56/75 +have a gene symbol. The other 19 are **not uniformly resolved exceptions**: +they include documented complex/family or reagent representations, possible +source parsing artifacts, and identifiers still needing review. The dashboard +classifies these separately from the registry notes and retains identifier +completeness in each row's details. A missing gene/PRO ID alone is not an error, +and a documented representation exception is not a biological sign-off. + +Dashboard categories: 55 with recorded PRO/gene mappings, 10 documented +complex/family representations, 3 documented non-protein/reagent markers, +4 possible source artifacts, and 3 unresolved gene mappings. One complex/multi-gene +representation has a recorded gene symbol, explaining why the gene-populated +count is 56 while the general `mapped` category contains 55. + ### Mapping table schema One row per (marker, protein) mapping. Columns: @@ -56,7 +103,7 @@ columns empty rather than forcing a mapping. --- -## Milestone 2 — Literature support for markers ⬜ +## Milestone 2 — Literature support for markers 🟡 (8/14 categories) Establish evidence that each marker (and marker combination) defines its cell type as claimed. @@ -85,6 +132,12 @@ type as claimed. per cell type or per marker), each listing markers, verified supporting quotes, and citations. +**Status (2026-09-08):** 8 of the 14 cell-type categories in the `Citation +Mgr` tab are covered — B cell, DC, ILC, iNKT, NK cell, T cell, gdT, MAIT +(`immunoprofiling` excluded from the denominator as a cross-cutting method +category, not a cell type). Still missing: monocyte, neutrophil, basophil, +mast cell, granulocyte, MDSC. + --- ## Milestone 3 — Audit curated CL mappings ⛔ (blocked) @@ -93,16 +146,23 @@ Check the existing curated SOULCAP→CL mappings against the marker definitions (Milestone 1) and the literature evidence (Milestone 2). **Blocked on:** the Google Sheet gaining dedicated columns for **broad vs. exact -CL match** plus a **comment** column. (Today the sheet has `Type of Match`, -`OLS CL identifier`, and `CL Mapping Notes`; this milestone needs the -broad/exact distinction made explicit.) +CL match** plus a **comment** column. (Confirmed still absent as of the +2026-09-08 sync — the sheet has `Type of Match`, `OLS CL identifier`, and +`CL Mapping Notes`; `Type of Match` is an assay-type field, not the +broad/exact CL-match distinction this milestone needs made explicit.) **Deliverable:** a report flagging mappings that are unsupported, mis-typed (broad labelled exact or vice versa), or contradicted by markers/literature. +**Status (2026-09-08):** the `mapping-audit` skill now covers a reduced +version of this — re-verifying curated mappings' evidence and `match_type` +against current CL marker axioms and literature, catching drift — without +needing the sheet columns. It cannot capture curator *intent*, so this +milestone stays ⛔ for the full deliverable until the sheet changes. + --- -## Milestone 4 — Candidate improved CL mappings ⬜ +## Milestone 4 — Candidate improved CL mappings 🟡 (80/127 entities with proposals) Propose new or corrected SOULCAP→CL mappings, each with a rationale and supporting evidence. @@ -120,6 +180,12 @@ supporting evidence. type, proposed CL term + ID, match type (broad/exact), rationale, and the marker + literature evidence supporting it. +**Local status (2026-09-11):** `mappings/curated_mappings.tsv` contains 80 +proposal records covering 80 of 127 registered entities; 47 entities have no +proposal. The SSSOM export is generated from this registry. All proposals are +`needs_review`, not confirmed equivalences. The gap log includes family-level +entries and is not a one-to-one accounting of the 47 entities without proposals. + --- ## CL term corrections diff --git a/mappings/README.md b/mappings/README.md new file mode 100644 index 0000000..84af56e --- /dev/null +++ b/mappings/README.md @@ -0,0 +1,56 @@ +# Curated mapping registry + +The Google Sheet owns SOULCAP source definitions. These tracked tables own +this repository's identifiers and proposed mapping decisions. + +- `soulcap_entities.tsv`: 127 permanent, locally assigned `SOULCAP:SCnnnnnn` + identifiers. They are not official SOULCAP identifiers. Never renumber or + reuse them. Initial numbering follows the migration snapshot's ordering; + subsequent resolution does not use row numbers. +- `curated_mappings.tsv`: the 80 migrated proposals, including existing notes, + uncertainty, and the four recorded monocyte-family sheet confirmations. + `legacy_subject_id` preserves the old abbreviation-based export ID. + +Resolution uses abbreviation, parent, and WB/PBMC context. If that combination +is duplicated, a SHA-256 signature of the four marker columns selects the +correct row. Changes to an ambiguous profile remain `unregistered:` until a +curator updates the registry. For a renamed entity, update its lookup columns +while retaining its subject ID; add a new entity with a new ID only when it +really is a new definition. An explicit `subject_id` on an input row permits +stable resolution after renaming. Changing labels never changes an existing ID. + +Edit proposed decisions in `curated_mappings.tsv`, then run `uv run soulcap-sssom`. +This generates SSSOM, a Markdown review, and a sidecar of input SHA-256 hashes. +Use `--source`, `--mappings`, `--tsv`, `--out`, and `--review-out` for explicit +inputs or alternate output locations. Source profiles are read, not edited. + +`match_type` is directional from SOULCAP to CL: Exact means proposed +equivalence, Broad means CL is broader, Narrow means CL is narrower, and +Related records a relationship without asserting equivalence or containment. +Migration preserves all existing match types; it does not certify them. + +`review_status` starts at `needs_review`: previous proposals were not treated +as a fresh sign-off. Record actual curator review explicitly. Lexical, +literature, and curator evidence have separate fields; blank means not +recorded in structured form. Original narrative evidence is retained in +`reports/candidate_cl_mappings_narrative.md`. Do not invent citations when +transferring evidence from that archive. + +`evidence_override` is historical provenance only and no longer controls +computed marker evidence or confidence. The actual sheet CL ID is compared +with each proposal on every export; agreement does not erase phenotype +conflicts. Numeric confidence is omitted until it can be calibrated against +reviewed examples. + +The evidence engine reports required-marker matches, contradictions, unknown +clauses, ideal-marker conflicts, direct versus inferred support, and extra CL +markers that the SOULCAP panel does not test. Missing axioms are unknown, +including under negation. Even complete marker support does not establish +equivalence, taxon compatibility, tissue context, or literature validity. +The current axiom index uses the CL-PRO snapshot's CD synonym tokens; markers +without such tokens remain unknown. Protein/complex resolution and species +constraints are separate future matching improvements. + +The SSSOM `comment` contains structured JSON evidence and retained provenance. +All exports remain proposals. The generated Markdown is a readable view of +the same rows, not a second decision source. diff --git a/mappings/benchmark_reserve.json b/mappings/benchmark_reserve.json new file mode 100644 index 0000000..e0bccdb --- /dev/null +++ b/mappings/benchmark_reserve.json @@ -0,0 +1,27 @@ +{ + "schema_version": 1, + "status": "prospective_unlabelled_reserve_not_validated_holdout", + "created": "2026-09-18", + "selection_seed": "soulcap-prospective-reserve-v1-2026-09-18", + "selection": "Exclude proposal subjects, identical development profile signatures, and empty profiles. Group remaining entities by profile signature. Sort groups by sha256(seed + newline + signature), select first 5, retain all members.", + "eligible_profile_groups": 25, + "source_hashes": { + "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44", + "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8", + "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e" + }, + "groups": [ + {"profile_signature": "5d5a0236bda1d6fd48342ff345e11190b882b8a130cec0b106e75346e1f97f2e", "subject_ids": ["SOULCAP:SC000078"]}, + {"profile_signature": "5dbf4fe62368d80aad94d8391f56a9eae278c5df22c404df334985fa2d9edb90", "subject_ids": ["SOULCAP:SC000077"]}, + {"profile_signature": "7cc8c775ded3f9d32a26e915374d756a00c48da25d0877ee64a727ffbde76c7f", "subject_ids": ["SOULCAP:SC000115"]}, + {"profile_signature": "fe2718042d6a8e804c8436d28e43eb4ecbfc838e65f38c3bc1b7d0bac78a0218", "subject_ids": ["SOULCAP:SC000124"]}, + {"profile_signature": "745dbae3a744d8f04bfa34c0f8c15e967774b31da9d847d0faba220db41c1fae", "subject_ids": ["SOULCAP:SC000116"]} + ], + "limitations": [ + "No acceptable CL IDs or mapping relations have been assigned; no held-out accuracy can be reported.", + "This selection was not ranked or used for the current correction. Prior repository-wide exposure is unknown; do not call this historically blind.", + "Exact profile hashes prevent identical-profile leakage only, not semantic or cell-family overlap.", + "Freeze matcher configuration before independent annotation. Annotators must not see candidate rankings. Record reviewer, date, sources, tissue and lineage checks, and adjudication.", + "Use an isolated benchmark and proposal input for final validation: the current evaluator automatically includes all development proposals. Do not merge reserve labels into the default development benchmark." + ] +} diff --git a/mappings/curated_mappings.tsv b/mappings/curated_mappings.tsv new file mode 100644 index 0000000..41fe206 --- /dev/null +++ b/mappings/curated_mappings.tsv @@ -0,0 +1,81 @@ +subject_id legacy_subject_id abbreviation subject_label cl_id cl_label match_type uncertain review_status evidence_override note lexical_evidence literature_evidence evidence_source curator_evidence +SOULCAP:SC000001 SOULCAP:NK NK Natural Killer Cell CL:0000623 natural killer cell Exact needs_review no_marker_axiom CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the defining positive CD56 marker is absent — a documented CL gap (cl_term_issues.md), not confirmed here. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000002 SOULCAP:NK2 NK2 Natural Killer Cell 2 CL:0000938 CD16-negative, CD56-bright natural killer cell, human Exact needs_review reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000003 SOULCAP:CTNK CTNK Cytotoxic Natural Killer Cell CL:0000939 CD16-positive, CD56-dim natural killer cell, human Exact needs_review reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000004 SOULCAP:NK1 NK1 Natural Killer Cell 1 CL:0000939 CD16-positive, CD56-dim natural killer cell, human Broad needs_review CL does not distinguish CD57 status within this subtype. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000005 SOULCAP:NK3 NK3 Natural Killer Cell 3 CL:0000939 CD16-positive, CD56-dim natural killer cell, human Broad needs_review CL does not distinguish CD57 status within this subtype. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000006 SOULCAP:ILCp ILCp Innate Lymphoid Cell Progenitor CL:0001074 CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human Broad true needs_review SOULCAP profile does not test CD34; CL:0001073 (CD34-negative) and CL:0001082 (immature innate lymphoid cell) are equally marker-consistent alternatives, not ruled out. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000007 SOULCAP:ILC ILC Innate Lymphoid Cell CL:0001065 innate lymphoid cell Exact needs_review no_marker_axiom Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, not CL-marker-supported. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000008 SOULCAP:ILC1 ILC1 Innate Lymphoid Cell 1 CL:0001067 group 1 innate lymphoid cell Exact needs_review no_marker_axiom Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only. No human-specific CL term exists for group 1 (unlike group 2/3); filed as CL gap, repo issue #14. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000009 SOULCAP:ILC2 ILC2 Innate Lymphoid Cell 2 CL:0001081 group 2 innate lymphoid cell, human Exact needs_review no_marker_axiom Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had picked the wrong-species term. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000010 SOULCAP:ILC3 ILC3 Innate Lymphoid Cell 3 CL:0001078 group 3 innate lymphoid cell, human Exact needs_review no_marker_axiom Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had over-specified to an NKp44+ subtype. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000011 SOULCAP:cDC cDC Conventional Dendritic Cell CL:0000990 conventional dendritic cell Exact needs_review no_marker_axiom Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000012 SOULCAP:cDC1 cDC1 Conventional Dendritic Cell 1 CL:0002394 CD141-positive myeloid dendritic cell Exact needs_review no_marker_axiom Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had wrongly assigned cDC1 the same term as cDC2. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000013 SOULCAP:cDC2 cDC2 Conventional Dendritic Cell 2 CL:0002399 CD1c-positive myeloid dendritic cell Exact needs_review no_marker_axiom Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed correct by cross-check against cDC1. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000014 SOULCAP:pDC pDC Plasmacytoid Dendritic Cell CL:0001058 plasmacytoid dendritic cell, human Exact needs_review no_marker_axiom Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only. Sheet's Full Name reads 'Peripheral Dendritic Cell' (likely a typo for 'Plasmacytoid'); not yet corrected at source. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000015 SOULCAP:Basophil_(PBMC) Basophil (PBMC) Basophil CL:0000043 mature basophil Exact needs_review reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000016 SOULCAP:Basophil_(WB) Basophil (WB) Basophil CL:0000043 mature basophil Exact needs_review reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000017 SOULCAP:Mono Mono Monocyte CL:0000576 monocyte Exact needs_review sheet_confirmed OAK-verified exact label match (OLS4 was timing out); CL:0000576 has no marker axioms recorded at all. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification. +SOULCAP:SC000018 SOULCAP:CMo CMo Classical Monocyte CL:0000860 classical monocyte Exact needs_review sheet_confirmed OAK-verified exact label match. CL:0000860 asserts only CCR2 (CD192) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification. +SOULCAP:SC000019 SOULCAP:NCMo NCMo Non-classical Monocyte CL:0000875 non-classical monocyte Exact needs_review sheet_confirmed OAK-verified exact label match. CL:0000875 asserts only CX3CR1 and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification. +SOULCAP:SC000020 SOULCAP:IntMo IntMo Intermediate Monocyte CL:0002393 intermediate monocyte Exact needs_review sheet_confirmed OAK-verified exact label match. CL:0002393 asserts only CCR2 (CD192, negative) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification. +SOULCAP:SC000021 SOULCAP:Neutrophil Neutrophil Neutrophil CL:0000775 neutrophil Exact needs_review reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000022 SOULCAP:Eosinophil Eosinophil Eosinophil CL:0000771 eosinophil Exact needs_review CD193 (CCR3) positive is directly asserted (not inferred) on CL:0000771, precisely matching SOULCAP's defining CD193+ requirement — one of the stronger marker-confirmed matches in this set. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000023 SOULCAP:B_cell B cell B cell CL:0000236 B cell Exact needs_review no_marker_axiom OLS4 REST search returned zero hits for this exact query; found instead via OAK. CL:0000236 has no marker axioms recorded. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000024 SOULCAP:ASC ASC Antibody Secreting Cell CL:0000946 antibody secreting cell Exact needs_review no_marker_axiom Lexical match; marker scoring found nothing useful (mouse B220-nomenclature terms scored highest instead). reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000025 SOULCAP:PB PB Plasmablast CL:0000980 plasmablast Exact needs_review no_marker_axiom Lexical match; marker scoring found nothing useful. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000026 SOULCAP:PC PC Plasma Cell CL:0000786 plasma cell Exact needs_review no_marker_axiom Lexical match; marker scoring found nothing useful. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000028 SOULCAP:T1/T2_B T1/T2 B Transitonal B cell 1 and 2 CL:0000818 transitional stage B cell Broad needs_review no_marker_axiom SOULCAP combines T1+T2 into one gate; CL keeps CL:0000958 (T1) and CL:0000959 (T2) separate under this parent term. Sheet's Full Name has a typo ('Transitonal'). reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000029 SOULCAP:Mature_B Mature B Mature B cell CL:0000785 mature B cell Exact needs_review no_marker_axiom Lexical match; marker scoring found nothing useful. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000030 SOULCAP:T3 T3 Transitional B cell 3 CL:0000960 T3 B cell Exact needs_review no_marker_axiom Lexical match; marker scoring found nothing useful. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000031 SOULCAP:Naive Naive Naive B cell CL:0000788 naive B cell Exact needs_review no_marker_axiom Lexical match; marker scoring found nothing useful. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000032 SOULCAP:BDN BDN Double Negative B cells CL:0000981 double negative memory B cell Exact needs_review no_marker_axiom OAK-verified; batch lexical search had wrongly picked CL:0002103, an IgG-positive-specific child term. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000033 SOULCAP:BDN1 BDN1 Double Negative B cell 1 CL:0000981 double negative memory B cell Broad needs_review no_marker_axiom No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000034 SOULCAP:BDN2 BDN2 Double Negative B cell 2 CL:0000981 double negative memory B cell Broad needs_review no_marker_axiom No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000035 SOULCAP:BDN3 BDN3 Double Negative B cell 3 CL:0000981 double negative memory B cell Broad needs_review no_marker_axiom No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000036 SOULCAP:BDN4 BDN4 Double Negative B cell 4 CL:0000981 double negative memory B cell Broad needs_review no_marker_axiom No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000037 SOULCAP:Bmem Bmem Memory B cell CL:0000787 memory B cell Exact needs_review no_marker_axiom Lexical match; marker scoring found nothing useful. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000039 SOULCAP:Unswitched Unswitched Unswitched Memory B cell CL:0000970 unswitched memory B cell Exact needs_review no_marker_axiom Lexical match, OAK-confirmed. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000040 SOULCAP:IgM_only IgM only IgM-only Memory B cell CL:0000971 IgM memory B cell Exact needs_review no_marker_axiom Lexical match, OAK-confirmed. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000041 SOULCAP:Switched Switched Switched Memory B cell CL:0000972 class switched memory B cell Exact needs_review no_marker_axiom OAK-verified; batch lexical search had wrongly picked CL:0002117, an IgG-negative-specific child term (too narrow for the general Switched parent, which shouldn't exclude any Ig class). Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000042 SOULCAP:IgA IgA IgA-Class Switched B cell CL:0000973 IgA memory B cell Exact needs_review no_marker_axiom Lexical match, OAK-confirmed. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000043 SOULCAP:IgG IgG IgG-Class Switched B cell CL:0000979 IgG memory B cell Exact needs_review no_marker_axiom OAK-verified; batch lexical search had wrongly picked CL:0002117 'IgG-negative class switched memory B cell' — the opposite polarity of what this row defines. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000044 SOULCAP:IgE IgE IgE-Class Switched B cell CL:0000948 IgE memory B cell Exact needs_review no_marker_axiom Lexical match, OAK-confirmed. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000045 SOULCAP:T_cell T cell T lymphocyte CL:0000084 T cell Exact needs_review no_marker_axiom OAK-verified; marker scoring returned unrelated myeloid terms. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000060 SOULCAP:TCRab TCRab alpha/beta T cell CL:0000789 alpha-beta T cell Exact needs_review no_marker_axiom OAK-verified; marker scoring returned unrelated myeloid terms. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000061 SOULCAP:TCRgd TCRgd gamma/delta T cell CL:0000798 gamma-delta T cell Exact needs_review no_marker_axiom OAK-verified; marker scoring returned unrelated myeloid terms. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000059 SOULCAP:iNKT iNKT Invariant Natural Killer T cell CL:0000814 mature NK T cell Exact needs_review no_marker_axiom OAK-verified. Same term flagged in repo issue #13 for a rename to 'iNKT cell' (filed upstream, awaiting review) — mapping is correct either way. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000074 SOULCAP:MAIT MAIT Mucosal-associated Invariant T cell CL:0000940 mucosal-associated invariant T cell Exact needs_review no_marker_axiom Lexical match, OAK-confirmed. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000066 SOULCAP:CD4+_TCRab_T_cell CD4+ TCRab T cell CD4+ alpha/beta T cell CL:0000624 CD4-positive, alpha-beta T cell Exact needs_review no_marker_axiom OAK-verified. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000067 SOULCAP:CD8+_TCRab_T_cell CD8+ TCRab T cell CD8+ alpha/beta T cell CL:0000625 CD8-positive, alpha-beta T cell Exact needs_review no_marker_axiom OAK-verified. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000073 SOULCAP:CD4-/CD8-_TCRgd CD4-/CD8- TCRgd CD4-/CD8- gamma/delta T cell CL:0000803 CD4-negative, CD8-negative gamma-delta T cell Exact needs_review no_marker_axiom OAK-verified; double-negative is the classical gamma-delta T cell phenotype. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000062 SOULCAP:CD4+_T_cell CD4+ T cell alpha/beta and gamma/delta CD4+ T cells CL:0000624 CD4-positive, alpha-beta T cell Broad needs_review no_marker_axiom CL has no combined alpha-beta+gamma-delta CD4+ term; alpha-beta dominates the CD4+ compartment. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000063 SOULCAP:CD8+_T_cell CD8+ T cell alpha/beta and gamma/delta CD8+ T cells CL:0000625 CD8-positive, alpha-beta T cell Broad needs_review no_marker_axiom Same reasoning as CD4+ T cell. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000064 SOULCAP:CD4+/CD8+_T_cell CD4+/CD8+ T cell alpha/beta and gamma/delta CD4+ and CD8+ T cells CL:0000789 alpha-beta T cell Broad true needs_review no_marker_axiom No CD4+CD8+ double-positive CL term found at all; peripheral DP T cells are themselves biologically unusual. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000065 SOULCAP:CD4-/CD8-_T_cell CD4-/CD8- T cell alpha/beta and gamma/delta CD4- and CD8- T cells CL:0000084 T cell Broad true needs_review no_marker_axiom No peripheral (non-thymic) double-negative term spanning both TCR types; only a thymocyte-stage term exists (wrong tissue). reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000068 SOULCAP:CD4+/CD8+_TCRab_T_cell CD4+/CD8+ TCRab T cell CD4+ and CD8+ alpha/beta T cell CL:0000789 alpha-beta T cell Broad true needs_review no_marker_axiom No CD4+CD8+ double-positive alpha-beta term found. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000069 SOULCAP:CD4-/CD8-_TCRab_T_cell CD4-/CD8- TCRab T cell CD4- and CD8- alpha/beta T cell CL:0000789 alpha-beta T cell Broad true needs_review no_marker_axiom Only CL:0002489 'double negative thymocyte' found — wrong tissue/maturity stage for a blood/PBMC panel. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000070 SOULCAP:CD4+_TCRgd_T_cell CD4+ TCRgd T cell CD4+ gamma/delta T cell CL:0000798 gamma-delta T cell Broad true needs_review no_marker_axiom CD4+ gamma-delta T cells are atypical/rare; no CL term found. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000071 SOULCAP:CD8+_TCRgd_T_cell CD8+ TCRgd T cell CD8+ gamma/delta T cell CL:0000798 gamma-delta T cell Broad true needs_review no_marker_axiom No CD8+-specific gamma-delta CL term found. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000072 SOULCAP:CD4+/CD8+_TCRgd CD4+/CD8+ TCRgd CD4+/CD8+ gamma/delta T cell CL:0000798 gamma-delta T cell Broad true needs_review no_marker_axiom No CD4+CD8+ double-positive gamma-delta term found. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000046 SOULCAP:CD56+_T_cell CD56+ T cell CD56+ T cell CL:4052055 mature NK T cell, human Broad needs_review no_marker_axiom Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000047 SOULCAP:CD56+_CD4_T_cell CD56+ CD4 T cell CD56+ CD4 T cell CL:4052055 mature NK T cell, human Broad needs_review no_marker_axiom Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000048 SOULCAP:CD56+_CD8_T_cell CD56+ CD8 T cell CD56+ CD8 T cell CL:4052055 mature NK T cell, human Broad needs_review no_marker_axiom Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000049 SOULCAP:CD56+_TCRab CD56+ TCRab CD56+ alpha/beta T cell CL:4052055 mature NK T cell, human Broad needs_review no_marker_axiom Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000050 SOULCAP:CD56+_CD4+_TCRab CD56+ CD4+ TCRab CD56+ CD4+ alpha/beta T cell CL:4052055 mature NK T cell, human Broad needs_review no_marker_axiom Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000051 SOULCAP:CD56+_CD8+_TCRab CD56+ CD8+ TCRab CD56+ CD8+ alpha/beta T cell CL:4052055 mature NK T cell, human Broad needs_review no_marker_axiom Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000052 SOULCAP:CD56+_CD4+/CD8+_TCRab CD56+ CD4+/CD8+ TCRab CD56+ CD4+/CD8+ alpha/beta T cell CL:4052055 mature NK T cell, human Broad needs_review no_marker_axiom Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000053 SOULCAP:CD56+_CD4-/CD8-_TCRab CD56+ CD4-/CD8- TCRab CD56+ CD4-/CD8- alpha/beta T cell CL:4052055 mature NK T cell, human Broad needs_review no_marker_axiom Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000054 SOULCAP:CD56+_TCRgd CD56+ TCRgd CD56+ gamma/delta T cell CL:4052055 mature NK T cell, human Broad needs_review no_marker_axiom Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000055 SOULCAP:CD56+_CD4+_TCRgd CD56+ CD4+ TCRgd CD56+ CD4+ gamma/delta T cell CL:4052055 mature NK T cell, human Broad needs_review no_marker_axiom Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000056 SOULCAP:CD56+_CD8+_TCRgd CD56+ CD8+ TCRgd CD56+ CD8+ gamma/delta T cell CL:4052055 mature NK T cell, human Broad needs_review no_marker_axiom Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000057 SOULCAP:CD56+_CD4+/CD8+_TCRgd CD56+ CD4+/CD8+ TCRgd CD56+ CD4+/CD8+ gamma/delta T cell CL:4052055 mature NK T cell, human Broad needs_review no_marker_axiom Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000058 SOULCAP:CD56+_CD8-/CD8-_TCRgd CD56+ CD8-/CD8- TCRgd CD56+ CD8-/CD8- gamma/delta T cell CL:4052055 mature NK T cell, human Broad needs_review no_marker_axiom Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000087 SOULCAP:Tnaive Tnaive Naive alpha/beta and gamma/delta T cell CL:0000898 naive T cell Exact needs_review no_marker_axiom OAK-verified; the one generic (non-CD4/CD8-split) differentiation-state term that does exist in CL. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000089 SOULCAP:CD4+_TCRab_Tnaive CD4+ TCRab Tnaive CD4+ naive alpha/beta T cell CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell Exact needs_review no_marker_axiom OAK-verified. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000092 SOULCAP:CD8+_TCRab_Tnaive CD8+ TCRab Tnaive CD8+ naive alpha/beta T cell CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell Exact needs_review no_marker_axiom OAK-verified. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000082 SOULCAP:CD4+_TCRab_Tcm CD4+ TCRab Tcm CD4+ central memory alpha/beta T cell CL:0000904 central memory CD4-positive, alpha-beta T cell Exact needs_review no_marker_axiom OAK-verified. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000085 SOULCAP:CD8+_TCRab_Tcm CD8+ TCRab Tcm CD8+ central memory alpha/beta T cell CL:0000907 central memory CD8-positive, alpha-beta T cell Exact needs_review no_marker_axiom OAK-verified. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000096 SOULCAP:CD4+_TCRab_Tem CD4+ TCRab Tem CD4+ effector memory alpha/beta T cell CL:0000905 effector memory CD4-positive, alpha-beta T cell Exact needs_review no_marker_axiom OAK-verified. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000099 SOULCAP:CD8+_TCRab_Tem CD8+ TCRab Tem CD8+ effector memory alpha/beta T cell CL:0000913 effector memory CD8-positive, alpha-beta T cell Exact needs_review no_marker_axiom OAK-verified. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md +SOULCAP:SC000103 SOULCAP:CD4+_TCRab_Temra CD4+ TCRab Temra CD4+ CD45RA+ effector memory alpha/beta T cell CL:4030002 effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated Exact needs_review no_marker_axiom OAK-verified. No CD8+-specific counterpart with this 'terminally differentiated' qualifier was found — see gaps.tsv. Legacy note records OAK verification; no query artifact retained. reports/candidate_cl_mappings_narrative.md diff --git a/mappings/marker_assertion_benchmark.json b/mappings/marker_assertion_benchmark.json new file mode 100644 index 0000000..1743a19 --- /dev/null +++ b/mappings/marker_assertion_benchmark.json @@ -0,0 +1,39 @@ +{ + "schema_version": 1, + "scope": "Resolver evidence constraints, not cell-type equivalence ground truth", + "reviewer": "Codex automated source review; no human curator sign-off", + "review_date": "2026-09-18", + "evidence_reference": "reports/regression-followup/README.md#scoped-correction", + "cases": [ + { + "case_id": "whole_cd8_surface_positive", + "axiom": {"pr": "PR:000025402", "relation": "RO:0002104", "sense": "positive", "cd_synonym": "CD8 (label)"}, + "expected_tokens": ["CD8"], + "expected_path": "reviewed_surface_assertion" + }, + { + "case_id": "cd8_alpha_is_not_whole_coreceptor", + "axiom": {"pr": "PR:000001084", "relation": "RO:0002104", "sense": "positive", "cd_synonym": "CD8 (label)"}, + "expected_tokens": [], + "expected_path": null + }, + { + "case_id": "generic_part_does_not_establish_surface", + "axiom": {"pr": "PR:000025402", "relation": "BFO:0000051", "sense": "positive", "cd_synonym": "CD8 (label)"}, + "expected_tokens": [], + "expected_path": null + }, + { + "case_id": "cd8_alpha_negative_stays_withheld", + "axiom": {"pr": "PR:000001084", "relation": "CL:4030046", "sense": "negative", "cd_synonym": "CD8 (label)"}, + "expected_tokens": [], + "expected_path": null + }, + { + "case_id": "cd3_epsilon_is_not_whole_complex", + "axiom": {"pr": "PR:000001020", "relation": "CL:4030046", "sense": "negative", "cd_synonym": "CD3 (label)"}, + "expected_tokens": [], + "expected_path": null + } + ] +} diff --git a/mappings/matcher_benchmark.tsv b/mappings/matcher_benchmark.tsv new file mode 100644 index 0000000..64ee74d --- /dev/null +++ b/mappings/matcher_benchmark.tsv @@ -0,0 +1 @@ +subject_id acceptable_cl_ids match_type review_status evidence_reference diff --git a/mappings/soulcap_entities.tsv b/mappings/soulcap_entities.tsv new file mode 100644 index 0000000..b415eb9 --- /dev/null +++ b/mappings/soulcap_entities.tsv @@ -0,0 +1,128 @@ +subject_id Abbreviation Parent WB or PBMC subject_label profile_signature +SOULCAP:SC000001 NK Natural Killer Cell 77102d43f9abced8b3efd2e11ad6d91a492bf101ebdb061a1fd67aaaa275c58c +SOULCAP:SC000002 NK2 NK Natural Killer Cell 2 a9e05f94e58b7fb289cf2f39044e4e9725e26448a3cd5681102b4c6d61ce1b72 +SOULCAP:SC000003 CTNK NK Cytotoxice Natural Killer Cell 0c64cf7d98b4bdcf4e679fa78c81aaf8ca3f51838a33d7de99e5082953f626e4 +SOULCAP:SC000004 NK1 CTNK Natural Killer Cell 1 f05210befba803c20f60f0d68ce4bb9628c48dcb56332edbfcec30611126dea5 +SOULCAP:SC000005 NK3 CTNK Natural Killer Cell 3 6a604e667984630b654916095b7e5468c3ffd2c44e5e8cdc480cec67437b2161 +SOULCAP:SC000006 ILCp Innate Lymphoid Cell Progenitor 03443463d5f102ae603565b7efde6d5b2de1f1f9c96016ecffdf886dd673995e +SOULCAP:SC000007 ILC Innate Lymphoid Cell 2382ffa8b1693854f19ee2104691b9f0a0c23f6e976b56d1c507692da08d12fc +SOULCAP:SC000008 ILC1 ILC Innate Lymphoid Cell 1 0a749f50550a7edd93adce27f94a7302c0dbc59107a2eaae2cf44d03133a6568 +SOULCAP:SC000009 ILC2 ILC Innate Lymphoid Cell 2 735345c450434e1f351231103ee6c81f7e0ba186fb9ce20230642a95b44c7a23 +SOULCAP:SC000010 ILC3 ILC Innate Lymphoid Cell 3 60bbd7b2b4b6bd74a25764ca423e651165008b0e6d59552268caf45876ec18f8 +SOULCAP:SC000011 cDC Conventional Dendritic Cell 334dd74448fec5173d10655dacd2b628cd103b346f3c6a7b37b061edc4ac9fa6 +SOULCAP:SC000012 cDC1 DCM Conventional Dendritic Cell 1 26b00ac7a3eecc08344c5062dce97e2ccfd3a591c8a347be9f155b32e0128b25 +SOULCAP:SC000013 cDC2 DCM Conventional Dendritic Cell 2 3e6dc30f6e3ac086a6d06bc8b78c27895cba0f8f343c29a212dd2cb02d6dddee +SOULCAP:SC000014 pDC PBMC Peripheral Dendritic Cell 90a3916e208c3f3f041f7567896fcd45d341337251da243d921d8127b8562d71 +SOULCAP:SC000015 Basophil PBMC Basophil 6ae772d0622c8988d15f047ef4570ab309a99edce893328ef9c815aec7e0c1b3 +SOULCAP:SC000016 Basophil WB Basophil b5e758e040d00ac23abae3ebc35dddae9abe67be32d404eb68c7345159c4132c +SOULCAP:SC000017 Mono WB and PBMC Monocyte 84c375696035c6d7c9de16751255259e8e834ac9287f201f13ed821a7bfdda5d +SOULCAP:SC000018 CMo Mono WB and PBMC Classical Monocyte 4c9436c977492d1ccea66ec05a22925897e6235162061f41dbf8e4e09ac940e3 +SOULCAP:SC000019 NCMo Mono WB and PBMC Non-classical Monocyte 2ccb34f2fc50e1126131986d487fe42c67bdcacc16330874b67750b017cbeab0 +SOULCAP:SC000020 IntMo Mono WB and PBMC Intermediate Monocyte aa79f8b8798d9b79b35cd87edef7133ca5b824636f3f05d0dfe1b990d87d97c3 +SOULCAP:SC000021 Neut WB and PBMC Neutrophil 6a7f385e7dd5e22ba96aeedb4aa46fb2e6ab411bc046567fac5d0aeb3ea7f587 +SOULCAP:SC000022 Eos WB Eosinophil 874205816800964db5c591f96652bdac9d28acef6907b20275b346c4e2cc3524 +SOULCAP:SC000023 B cell B cell a0300906ff3acd98f58b8ebb9443d973b9710447d8ab4736aa111ae172b1df78 +SOULCAP:SC000024 ASC Antibody Secreting Cell a80b760b7494b5ccacbfeb5822368766f2b27665ee08fea9e8e1f9c303a76c79 +SOULCAP:SC000025 PB ASC Plasmablast 9863d8716862be947cf0fcd9d032cfb66cc1eb2aa59415522dc05bae36ac21f0 +SOULCAP:SC000026 PC ASC Plasma Cell 6e574209001a2ef071b4ee9221b9c2ac7c15348cb319df7b0eab050ed1ce33d4 +SOULCAP:SC000027 Transitional Transitional B cell 6a3cf5192354f71615ac51034b3e97c20eda99643fcaf5bbe6d41ad59bd12167 +SOULCAP:SC000028 T1/T2 B Transitonal B cell 1 and 2 8e6bd76f1ceb75aafb12ce1c9f1f0a727efdb0db0ab1bd88934207cb56b8d23e +SOULCAP:SC000029 Mature B Mature B cell f14a51d3dd6628aedda0566ee1eb97b43ac20fa39c7dd4821b092eb3c2633498 +SOULCAP:SC000030 T3 Mature B Transitional B cell 3 c7d5b803f4b7ec0ad269623f0df9add64154c59779b0c4589c88e925db6b299c +SOULCAP:SC000031 Naive Mature B Naive B cell 7a7186381e27aa134e9a0468d8655160824ee7beb4a772b89d7bcc28f7a1f5bd +SOULCAP:SC000032 BDN Mature B Double Negative B cells 7792df94242c9d36b2438d1ebfd2bc5b87024019c954e14608be41a8db701429 +SOULCAP:SC000033 BDN1 BDN Double Negative B cell 1 c62eca580cc03fcf60bd587054596958b6948bc819ef0177a57a30bf92292390 +SOULCAP:SC000034 BDN2 BDN Double Negative B cell 2 8dae6b711327c193f61b8478bc272a1bcf40c98a9b4fa7863f24744ac68f9d94 +SOULCAP:SC000035 BDN3 BDN Double Negative B cell 3 c32b5275dd23cbfb0e894c71d770a701e441b3f9b64a58505bb2e877432ff311 +SOULCAP:SC000036 BDN4 BDN Double Negative B cell 4 826848dc5698b7889f50a91571479d4d8df3b69818c6e35d375cb0cbf9c78ff5 +SOULCAP:SC000037 Bmem Memory B cell 34bdbd71e619cf5a9d0d1d558f151d94f32f2838461146c80efc3b99a38a1d39 +SOULCAP:SC000038 IgD only Bmem IgD only Memory B cell ac01542f5ac73af5b48d1cd4d8dcdd481745cb93002431ff3aca519330b235da +SOULCAP:SC000039 Unswitched Bmem Unswitched Memory B cell be597df8551f6a9089ef1a7d19df1001c94b871a2b75c8b38ba1eaff5e4605aa +SOULCAP:SC000040 IgM only Bmem IgM-only Memory B cell d09f52edd2dab52b6ecd601096f76369bcfacdb9bd6747950ef058956b2f8935 +SOULCAP:SC000041 Switched Bmem Switched Memory B cell 55d0f11894cc9063126bdd37e0bf7d45ec45f7646f762dc1831df0dec508e717 +SOULCAP:SC000042 IgA Switched IgA-Class Switched B cell f0b226f865a080a59df267e9661a46a0ac6870a0c085d78e22f6602106c5c636 +SOULCAP:SC000043 IgG Switched IgG-Class Switched B cell 9e0fad56a38767dcde18d8731a8fe7a614d906041b2d9a458862676a783d4a10 +SOULCAP:SC000044 IgE Switched IgE-Class Switched B cell 9ca73feda9e46115c036f84fd80769befad7829cdc6ed96a52aa88fca4f7a59e +SOULCAP:SC000045 T cell T lymphocyte a90c3eddb386b77ec690a7f2a2eb97716a7199b789c245863a4c0041e96e17b1 +SOULCAP:SC000046 CD56+ T cell T cell CD56+ T cell 63ee8683e94c984697c75d473a3e9d0405de2bafb176fbbb7535c16485178719 +SOULCAP:SC000047 CD56+ CD4 T cell CD4+ T cell CD56+ CD4 T cell 84b80ceffc55fff7fe754debacc9f78cc653222b608785feba0f66708b01dde4 +SOULCAP:SC000048 CD56+ CD8 T cell CD8+ T cell CD56+ CD8 T cell 34a6e8b963f5282eb1065224d59a75e84c202dad24e1ddc0dd17b8d0ab024a83 +SOULCAP:SC000049 CD56+ TCRab TCRab CD56+ alpha/beta T cell bdfd521f1aa55093bb7d384b33300ba798a6fdef632c1388605366eb409de274 +SOULCAP:SC000050 CD56+ CD4+ TCRab CD4+ TCRab T cell CD56+ CD4+ alpha/beta T cell 9a4ced986acc32ace2a83492eab90c58f5ae9c0441567aca95f4e28c9d3fbcf9 +SOULCAP:SC000051 CD56+ CD8+ TCRab CD8+ TCRab T cell CD56+ CD8+ alpha/beta T cell b2f803379d1195f6e331538ba442ab35f72c2a6789cc87a8721166f35ede43c8 +SOULCAP:SC000052 CD56+ CD4+/CD8+ TCRab CD4+/CD8+ TCRab T cell CD56+ CD4+/CD8+ alpha/beta T cell 6e603f37397e663e6aafe3714835bd1ae95ffe1e303019fa9fb4da5fad0c5e10 +SOULCAP:SC000053 CD56+ CD4-/CD8- TCRab CD4-/CD8- TCRab T cell CD56+ CD4-/CD8- alpha/beta T cell 42bb527a1f37479462be10ffb3c00e7bcf5e6d45a7e744307c7c22b4c1bc48cc +SOULCAP:SC000054 CD56+ TCRgd TCRgd CD56+ gamma/delta T cell 94da794ef5aaaada95ca5d1821c8b6dcc741a4137fd1b37f83b530f94fbc94b6 +SOULCAP:SC000055 CD56+ CD4+ TCRgd CD4+ TCRgd T cell CD56+ CD4+ gamma/delta T cell b454579574584543682a9288b97f86311194588e3f7f593dd179fd79f7981201 +SOULCAP:SC000056 CD56+ CD8+ TCRgd CD8+ TCRgd T cell CD56+ CD8+ gamma/delta T cell 2d990bb85463e1c27e7bc7086c441b47432e2da0799105df8153600049d35681 +SOULCAP:SC000057 CD56+ CD4+/CD8+ TCRgd CD4+/CD8+ TCRgd CD56+ CD4+/CD8+ gamma/delta T cell 38983c8b8783e6204c78e6008e38c21e4abaf13295e847719bf6ac9fa73c585f +SOULCAP:SC000058 CD56+ CD8-/CD8- TCRgd CD4-/CD8- TCRgd CD56+ CD8-/CD8- gamma/delta T cell 51660216e5f35ba2abe0ff0944ef9899083a81d9233c1b018922ff8d00e6734a +SOULCAP:SC000059 iNKT T cell Invariant Natural Killer T cell 60d4418f4342fb333e84d3d92b22dabdede98114b0a29f3c3f48abfab7e76e12 +SOULCAP:SC000060 TCRab T cell alpha/beta T cell ba4169b61b018b402de9c4bdf1a7567c89a69d002b6069e3dcd2040bf2174626 +SOULCAP:SC000061 TCRgd T cell gamma/delta T cell d7791919e73dbff413ca7cdf0c8b00616465d67ed2a7b2301cb1a628e972622e +SOULCAP:SC000062 CD4+ T cell T cell alpha/beta and gamma/delta CD4+ T cells 13a042caf6eaa90447c12e475dcdeb8c94ab2c34f1847f43c379e4aff9aa0435 +SOULCAP:SC000063 CD8+ T cell T cell alpha/beta and gamma/delta CD8+ T cells ee71924d4eb86799cfb40fcc026874f16ac52b1df80dfa5bc25d00c7ef1bf019 +SOULCAP:SC000064 CD4+/CD8+ T cell T cell alpha/beta and gamma/delta CD4+ and CD8+ T cells 1a94242804d7d285d6e99a84f940c5920cba588e703bc9807bd7066e7a931273 +SOULCAP:SC000065 CD4-/CD8- T cell T cell alpha/beta and gamma/delta CD4- and CD8- T cells 81d30ff7dab4278ec39ef4008e2e6cb051865ff423a24182495de6f6150eff6e +SOULCAP:SC000066 CD4+ TCRab T cell TCRab CD4+ alpha/beta T cell 3509d97ed33d109d83671dd2292c0945863b4eeead30a216c95cfb9c41c4a5f9 +SOULCAP:SC000067 CD8+ TCRab T cell TCRab CD8+ alpha/beta T cell 5f511184f5b3fb48855d4ce1b1ed1777e79ca590353b921e6c8b66c7e79e2c17 +SOULCAP:SC000068 CD4+/CD8+ TCRab T cell TCRab CD4+ and CD8+ alpha/beta T cell 03c69fac8ec012810b035a54f82237833b6f4299be38ce9139c761ca28f65d09 +SOULCAP:SC000069 CD4-/CD8- TCRab T cell TCRab CD4- and CD8- alpha/beta T cell 147cd19bfa49697c170198087716cdfac8d82d0db6688150b183bb8e9c0340e5 +SOULCAP:SC000070 CD4+ TCRgd T cell TCRgd CD4+ gamma/delta T cell 737860c20417038a9c5b8c687ec9c6acfc02afd4216730694025bb805010eae3 +SOULCAP:SC000071 CD8+ TCRgd T cell TCRgd CD8+ gamma/delta T cell 4bdfff88d621b6e25864f108e587296403ce0eb3f750a245df9360950cf11c2a +SOULCAP:SC000072 CD4+/CD8+ TCRgd TCRgd CD4+/CD8+ gamma/delta T cell 133eef6f9076e3eb898ce7cacf7933f562be6fbd2f02d633a0eabe79675295e5 +SOULCAP:SC000073 CD4-/CD8- TCRgd TCRgd CD4-/CD8- gamma/delta T cell 14aa1fa36c44a759182a64cb01ef6287e81a7962a7a4d9e069923f7cbb98e097 +SOULCAP:SC000074 MAIT T Lymph Mucosal-associated Invariant T cell e05e515df11c34b85a932345238aa1a02785a793c4c9782e99728f4221b7692f +SOULCAP:SC000075 Conv TCRab T Lymph Conv TCRab be42ebe452f49ae0e9164cc376fad2254e1b625be839b54efc3630218921aa25 +SOULCAP:SC000076 CD4+ Conv TCRab ConT TCRab CD4+ Conv TCRab f75e5af914dab828d0c622017969865b5748a16c3cf6ce13e8a35d2f37115687 +SOULCAP:SC000077 CD8+ Conv TCRab ConT TCRab CD8+ Conv TCRab 5dbf4fe62368d80aad94d8391f56a9eae278c5df22c404df334985fa2d9edb90 +SOULCAP:SC000078 CD4+/CD8+ Conv TCRab ConT TCRab CD4+/CD8+ Conv TCRab 5d5a0236bda1d6fd48342ff345e11190b882b8a130cec0b106e75346e1f97f2e +SOULCAP:SC000079 CD4-/CD8- Conv TCRab ConT TCRab CD4-/CD8- Conv TCRab 58a0b8993a18559c1116d69be8152bcbb4203ff695f5d7257c560dca41198921 +SOULCAP:SC000080 Tcm T cell Central memory alpha/beta and gamma/delta T cells 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000081 CD4+ Tcm CD4+ T cell CD4+ central memory alpha/beta and gamma/delta T cells 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000082 CD4+ TCRab Tcm CD4+ TCRab T cell CD4+ central memory alpha/beta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000083 CD4+ TCRgd Tcm CD4+ TCRgd T cell CD4+ central memory gamma/delta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000084 CD8+ Tcm CD8+ T cell CD8+ central memory T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000085 CD8+ TCRab Tcm CD8+ TCRab T cell CD8+ central memory alpha/beta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000086 CD8+ TCRgd Tcm CD8+ TCRgd T cell CD8+ central memory gamma/delta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000087 Tnaive T cell Naive alpha/beta and gamma/delta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000088 CD4+ Tnaive CD4+ T cell CD4+ Naive alpha/beta and gamma/delta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000089 CD4+ TCRab Tnaive CD4 TCRab T cell CD4+ naive alpha/beta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000090 CD4+ TCRgd Tnaive CD4+ TCRgd T cell CD4+ naive gamma/delta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000091 CD8+ Tnaive CD8+ T cell CD8+ naive alpha/beta and gamma/delta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000092 CD8+ TCRab Tnaive CD8+ TCRab T cell CD8+ naive alpha/beta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000093 CD8+ TCRgd Tnaive CD8+ TCRgd T cell CD8+ naive gamma/delta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000094 Tem T cell Effector memory T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000095 CD4+ Tem CD4+ T cell CD4+ effector memory alpha/beta and gamma/delta T cells 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000096 CD4+ TCRab Tem CD4+ TCRab T cell CD4+ effector memory alpha/beta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000097 CD4+ TCRgd Tem CD4+ TCRgd T cell CD4+ effector memory gamma/delta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000098 CD8+ Tem CD8+ T cell CD8+ effector memory T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000099 CD8+ TCRab Tem CD8+ TCRab T cell CD8+ effector memory alpha/beta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000100 CD8+ TCRgd Tem CD8+ TCRgd T cell CD8+ effector memory gamma/delta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000101 Temra T cell CD45RA+ effector memory alpha/beta and gamma/delta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000102 CD4+ Temra CD4+ T cell CD4+ CD45RA+ effector memory alpha/beta and gamma/delta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000103 CD4+ TCRab Temra CD4 TCRab T cell CD4+ CD45RA+ effector memory alpha/beta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000104 CD4+ TCRgd Temra CD4+ TCRgd T cell CD4+ CD45RA+ effector memory gamma/delta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000105 CD8+ Temra CD8+ T cell CD8+ CD45RA+ effector memory alpha/beta and gamma/delta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000106 CD8+ TCRab Temra CD8+ TCRab T cell CD8+ CD45RA+ effector memory alpha/beta T cell 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000107 T helper TCRab T helper f652837fbdd6d241423c1f8164656507282eebbd1ba299a54e354c0fde1e6ac2 +SOULCAP:SC000108 T cytotoxic TCRab T cytotoxic 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000109 ConT Treg-like CD4 ConT ConT Treg-like 62c1edbf3cfec6ef45ec6320c952819405e64af7ca74da0c7994efb6058d88df +SOULCAP:SC000110 ConT Tfh-like CD4 ConT ConT Tfh-like 44ddcaa45adc71ea92ef7e77b9ee7aace81e8a2a68626ad1403c501bd806ad62 +SOULCAP:SC000111 Th1-like CD4 ConT Th1-like eb2f9be08483a4cfd23a4b65d441859fd78108524808b6116df5df5c3378dcae +SOULCAP:SC000112 Th2-like CD4 ConT Th2-like 5106e488ccb1e49c05ce9f61eac685eddf5db1bbb77e8a2d7de3db9104280624 +SOULCAP:SC000113 Th9-like Th9-like 8eb0d8bcd0a845c22b51a78ef6960fe0b610a27f2762cdc77dfba52cddd2d624 +SOULCAP:SC000114 Th17-like CD4 ConT Th17-like 32dbf52d43a6c950200d8a620fcd2113f43456d28ceca67d9634476ae3629c3c +SOULCAP:SC000115 CD4 PanT helper CD4/CD8 PanT CD4 PanT helper 7cc8c775ded3f9d32a26e915374d756a00c48da25d0877ee64a727ffbde76c7f +SOULCAP:SC000116 Th1-like Th1-like 745dbae3a744d8f04bfa34c0f8c15e967774b31da9d847d0faba220db41c1fae +SOULCAP:SC000117 Th2-like Th2-like 35b18f8384d3bc65ad2b547ebafa2ee65a7f450f8c7df3f50de35e8b13c7579f +SOULCAP:SC000118 Th9-like Th9-like 3adc1b6057ca08695d82bfb5eff06f5e438a8d6b28b15e247c53e1ff39526fc8 +SOULCAP:SC000119 Th17-like Th17-like 560be91a9fbc2152269f4b03cb558309acd6fe43ea34a28ca7b06fbf6031e05d +SOULCAP:SC000120 Tfh Tfh 9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9 +SOULCAP:SC000121 CD4 PanT Treg CD4/CD8 PanT CD4 PanT Treg 12311b4ebc6cb6ff425491558cded68e9103d4657a7a5782445ef9eb366da0f6 +SOULCAP:SC000122 Vg9 Vd2 TCRgd Vg9 Vd2 22113f037f007abdc5508d4e3927d8da1ee8897c10fb75fe5a92daf4a1268378 +SOULCAP:SC000123 Vd2 TCRgd Vd2 86e00878718ad9f17f7c2706d8f5deb6ed7d271e1e754018a8fc436f6ac5e4c6 +SOULCAP:SC000124 Vd3 TCRgd Vd3 fe2718042d6a8e804c8436d28e43eb4ecbfc838e65f38c3bc1b7d0bac78a0218 +SOULCAP:SC000125 Vg9 Vd1 Vg9 Vd1 7b120179028599d35017591da2ca5e036aeea61285114677deaeb48380841528 +SOULCAP:SC000126 Vd1 TCRgd Vd1 f81e0e5c6ff22ea508bfa42152e3c47ff47e510cf3000a3b16175a5797845d7d +SOULCAP:SC000127 Vg9 TCRgd Vg9 65aad0d96298993ec070c31bd5c6e884fd3a4e7595e157d92d6482ce0da6cd73 diff --git a/marker_mappings/marker_resolution.tsv b/marker_mappings/marker_resolution.tsv new file mode 100644 index 0000000..ddfed65 --- /dev/null +++ b/marker_mappings/marker_resolution.tsv @@ -0,0 +1,74 @@ +marker_token representation protein_resolution rationale source_ref registry_sha256 +CCR4 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CCR4 92a259ce694c97036005ca94363ab60cdf2c07dd4465f136ad8373345571fbeb +CCR6 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CCR6 dd41080790bdb3b9cc1b258f3b4f17024162a4bd7af398d26e6065806c6f016b +CD10 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD10 189b99e3ca24d72b63581e906db05fdce2427b67169f38465e976cd8a40ec9c4 +CD117 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD117 4bf76b64c7da8abcf0397922b199fab9771a83005c85c0af5815d29b15b9d735 +CD11C single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD11c 927410701d8301054de6eabf3e66edda2805061fd34d5c566cfea49bbfbb0931 +CD123 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD123 af15c6e28315d5d5b091949f3d604db639bfd89e01721e916fb8d530091daa2b +CD127 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD127 0fe9974e9d75510578b02748379254855e3feeab2e16248cdedeb1c3ee504d65 +CD138 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD138 9cc54f5fcd78013f8e7c99eb32410d8e55ae85c7b25dac314f095f19c736048c +CD14 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD14 d58b59b3d3d8e8446ef2be8f99beebb8ddbda1f788130737b4a20f57382408d9 +CD141 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD141 427b96ef42d73b5bb5411b83fb6a5a9c9d62bd861360fc509f5f9b910657fcba +CD15 unresolved withhold Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required. marker_mappings/marker_protein_gene.csv#CD15 f325259074857563bb021becc9b5ec90937ba529aed5be7c5c58e854c34c823d +CD16 unresolved withhold Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required. marker_mappings/marker_protein_gene.csv#CD16 a7a9cad253db0e9a36b0bf2b5efa04ded5e314c01b3166d19623519f6a3f43e7 +CD161 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD161 a00a3bff850030588e3dec0bf6bb6a357094e15ad9340e49e3b9b82b74bc17b2 +CD172A single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD172a 8aa1edf51a28be1cbf8a85aac530a28a6eeaeb63f743635e3ad470650a7a3faa +CD183 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD183 2c4d474ae9950ae9e6bbaa9c000f9b7859f940dea922176c90a82ce5caf63c83 +CD185 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD185 90cc4084aacbba0d63a1794fa93e45dfff222d1cdb7d8765bb91fd1612410251 +CD19 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD19 cfefbefa4fc565abb7aab6080b73ef73c7fc20a30204a80b233dc73c8bef9db1 +CD193 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD193 428812131627dc71e9536828d95814c7b70f075cf00d367fba9ae851189ef70c +CD194 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD194 d770a2f6824de9ca6b8be94f908377c2309cfb12e5be7a395df525e31ca2148c +CD196 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD196 ba5d384cfa94446a14a33cc4a126bc2fb759bac654a6c6a261f8e4bf8add84c9 +CD198 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD198 fd160c33da0e4004c60a00f67731f336619293a663aec372b1ff5c01eb82219a +CD1C single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD1c ec9943c17324c73a53427964a51c264e9b86e1a6755eb850c1bc943a8126f554 +CD1D-A-GALCER reagent_gate withhold Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein. marker_mappings/marker_protein_gene.csv#CD1d-a-GalCer ca0282e7ce4edd98e9c762657870f3556de86befddf8c33100fbbfcb7a800f01 +CD20 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD20 0666c2a713f30454576d62dedecb049fdca0acecbd50bc08804116bd160f7c25 +CD21 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD21 e60e1a4490685b99e9674d65469bacd24a97d6dd0950210f7a3c7453d86579b1 +CD24 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD24 e1cdc47dfa67d7f67019de006ba704a9d2bf0b13d04f0bbed037e8fede953bec +CD25 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD25 5951ea552f766b80cf59b979f41ba02de31750f5c0f6fbb1b21e55b67f3b82ab +CD27 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD27 e2bab281c9ec4622d3a2658385860ce789df4f4577a7bebb3f73976a9fcd82ab +CD294 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD294 4bdfb21b9889754554aaaeb73cfaed4816ac01c39857fb81b064b61f3bee8cc7 +CD3 unresolved withhold Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required. marker_mappings/marker_protein_gene.csv#CD3 4826e9aa340c65ec06caf2fc26791ec3be9f372584b3f28d2f4e7dc47857dfe0 +CD303 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD303 d098d8dc137622844570ce28ad2dd380e9c669d67864e5248c937e431e2bb6c3 +CD33 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD33 1de2ca7ac6bfd4daca770841d698b5635586630584ac1a6d8fd8f16537ea3e90 +CD34 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD34 ee16d3e65d632814251ced067773c95046ec569930b3dc4d22c9da1d9409c640 +CD38 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD38 a9443ead57bee08f430cd3737fc54621c649a971ee7e05530042406994fbbfb3 +CD4 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD4 0f768b0ba2691f0fdc2c64d396b8f89f5211d05b6773ee5dcfa2bb41bbff319c +CD45 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD45 c2144181df41b433bc4c8b7710bfda4122607d87ade0ed2d33ff4865a4b3c49d +CD56 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD56 b51d188a6fdfada2e42569c7553233a5f7625ae2976ba24724e84a95db6ceff1 +CD57 reagent_gate withhold Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein. marker_mappings/marker_protein_gene.csv#CD57 2cfc4413ee4844d8bb2c3bfddeb2ed6704073cfdefe57381f38270aaee40d080 +CD64 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD64 46571d20d73b5ef77ec5c7be28beda3c94890e33c17faf4904e285b294e2db47 +CD66B single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD66b 42305fda07fd524b609244d79f171598c6b1b1b879466170789a47c30bc9033a +CD8 unresolved withhold Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required. marker_mappings/marker_protein_gene.csv#CD8 846bd4bc8c8ea34fbf0c5c56e81c254a02fcb1bb913d7ed7d4dd64b1d895773a +CXCR3 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CXCR3 6620e8f0b53cd1ecfa795de32156537b7835bfbfb2e7a46195c7b9a4a6d21507 +CXCR5 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CXCR5 edfd11e18c37d49e6723778e16efd44bf98358fa84f3882908d38fd87bcb79c1 +FCER1A single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#FceR1a 0ffb585d4dc904f1d78456c5f8ae18e3d3c7e53e0a0addf4306a7654eec5884a +HLA-DR complex withhold Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence. marker_mappings/marker_protein_gene.csv#HLA-DR c7b6d01f0a4eaffefce1df3c4a53407d958d2f032e03a9ce22f0354adbdded3c +IFNG single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#IFNg 984c2f8cfe641da02a4d92ac78be3e3595127852ff7b8d67acacc0ae3361b8ba +IL-13 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#IL-13 0fea4e3f83d693c4bb37136de36e615363c0203996bd448c7b9c442f33cda6be +IL-17A single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#IL-17a 92fcb16f42e797476ce20b25717efcfa123fc60b9e8e0f979c01aefecba1fe2e +IL-4 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#IL-4 b73d688d701631fa8fe4c1db97221effb5ee895dad8fec7fdf4b77373958ee3c +IL-5 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#IL-5 9359347c3979d2efe87eed401c1bab949de52f4c187ebecafa6336c6327a25cd +IL-9 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#IL-9 9894867ba02520d0af6c0bf4858b55237d8a74be1be3dadaf0721b3a768ab686 +IGA protein_family withhold Registry notes document a non-single-protein or pan-marker representation. marker_mappings/marker_protein_gene.csv#IgA 61ac45fc138bab46fc31d71e42363d20de18a9585ff4717fb02702cbb03c6685 +IGD protein_family withhold Registry notes document a non-single-protein or pan-marker representation. marker_mappings/marker_protein_gene.csv#IgD e4a5f79157c47b9a0e3fccb6d6eb144d50c93d7fb5f71224bd825f3e09adfb52 +IGE protein_family withhold Registry notes document a non-single-protein or pan-marker representation. marker_mappings/marker_protein_gene.csv#IgE 67b95e398fb1095e4c4a380091f0dae23dec9025456defdd9d0f5f254740da2e +IGG protein_family withhold Registry notes document a non-single-protein or pan-marker representation. marker_mappings/marker_protein_gene.csv#IgG c51e1dd6ae671fd9db387be6d0a26fdce6645e0f6a00d14891c0922708a941e7 +IGM protein_family withhold Registry notes document a non-single-protein or pan-marker representation. marker_mappings/marker_protein_gene.csv#IgM fc17667826dd44b6b08bd4cb257f3d4fa23fdbf477c3da79386cb427b0d2f88d +MR1 unresolved withhold Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required. marker_mappings/marker_protein_gene.csv#MR1 96c5bf22b0be1d144cf60f175968b19c1485c64c4866d4a109f636a9c9af703d +TCR protein_family withhold Registry notes document a non-single-protein or pan-marker representation. marker_mappings/marker_protein_gene.csv#TCR 9a617aa9a766194134020d7afa5feca696fc92cb187377eb72b2bb326d40cae7 +TCRVA24 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#TCRVa24 f81c80eeaa4d2de919813822e062fe2e4210b8a025bd76ebbad546bdd0936315 +TCRVA24-JA18 complex withhold Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence. marker_mappings/marker_protein_gene.csv#TCRVa24-Ja18 aad1afeeb19ea59d1c85741576656d0bf629f1500ac86d389d008e5adc327020 +TCRVA7.2 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#TCRVa7.2 1917c912d25db47ddf31fdee753f0093f18dfb1fcf080f5a2dcc9a53cdd490a5 +TCRVB11 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#TCRVb11 3b0361d975e31467580067f5d17823f53d425f9d2b5ef44745fee1aba08ca941 +TCRVD2 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#TCRVd2 5fb0b153ecc148621ec7c97ffea4618dcaf12f3f62d1642acfb303c5179ef2ec +TCRVG9 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#TCRVg9 9318391135642e811b2781de7a9be4cc58f52c5f21dbfe8a0d316f3619f245f1 +TCRAB complex withhold Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence. marker_mappings/marker_protein_gene.csv#TCRab db65f2afbe24e19148fe8039a5a7df5983c5e9d0963d9cff9dec278958e33382 +TCRGD complex withhold Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence. marker_mappings/marker_protein_gene.csv#TCRgd 49ec8f76a1338a63effb3e88e3c748f97f2753861e47ad476c1f4a96384b40ec +TETRAMER reagent_gate withhold Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein. marker_mappings/marker_protein_gene.csv#Tetramer 2f3894386ee2918f58d53b858eebc8e09729f16699a8f9d6faab2d5900495227 +V unresolved withhold No PRO identity recorded; possible source artifact or unresolved marker requires clarification. marker_mappings/marker_protein_gene.csv#V 610b267c4ba493d65f1528fb008a91bcab513fe39cd039617f4ba0313b50fa61 +VB11 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#VB11 6642023972a293e8a24efa26bb504964bc55c6f68d25a2186fd5609b89465e9f +VD1 single_protein allow Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#Vd1 adcc38bd179456a5c30cbddcb322a4cec7c64ca04f5c0f5ca79aef2703ee25fc +DELTA unresolved withhold No PRO identity recorded; possible source artifact or unresolved marker requires clarification. marker_mappings/marker_protein_gene.csv#delta 83aed236bb5fcdc28afafd651c50af0e2bc053b7d9f64f979e47e39e66751b5e +DELTA1 unresolved withhold No PRO identity recorded; possible source artifact or unresolved marker requires clarification. marker_mappings/marker_protein_gene.csv#delta1 5b366a2c0a5c2f3a19355bb66e4ad0f88c172aa901c577aa9b16acff92294995 +GAMMA unresolved withhold No PRO identity recorded; possible source artifact or unresolved marker requires clarification. marker_mappings/marker_protein_gene.csv#gamma dc9b95fd067723b54cfdb2e4fcf8948e571b2dfc83b0fa6dc407a4bcf6f402be diff --git a/pyproject.toml b/pyproject.toml index 72ebe62..ca27b39 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -22,6 +22,10 @@ dependencies = [ ] [project.scripts] +soulcap-audit = "soulcap_cl_mapping.audit:main" +soulcap-evaluate = "soulcap_cl_mapping.evaluation:main" +soulcap-cache-terms = "soulcap_cl_mapping.candidate_index:cache_main" +soulcap-resolution-audit = "soulcap_cl_mapping.resolution_audit:main" soulcap-sync = "soulcap_cl_mapping.sync_sheets:main" soulcap-validate = "soulcap_cl_mapping.marker_syntax:main" soulcap-cache = "soulcap_cl_mapping.snippet_cache:main" @@ -52,6 +56,10 @@ build-backend = "hatchling.build" [tool.hatch.build.targets.wheel] packages = ["src/soulcap_cl_mapping"] +[tool.hatch.build.targets.wheel.force-include] +"mappings/soulcap_entities.tsv" = "soulcap_cl_mapping/_registry/soulcap_entities.tsv" +"mappings/curated_mappings.tsv" = "soulcap_cl_mapping/_registry/curated_mappings.tsv" + [tool.pytest.ini_options] testpaths = ["tests"] addopts = "--cov=soulcap_cl_mapping --cov-report=term-missing --cov-fail-under=80" diff --git a/reports/audit_dashboard.html b/reports/audit_dashboard.html new file mode 100644 index 0000000..f54a5a1 --- /dev/null +++ b/reports/audit_dashboard.html @@ -0,0 +1,87 @@ + + + + + +SOULCAP · Mapping audit + + + +
SOULCAP × Cell Ontology

Mapping audit

A local review of mapping coverage, phenotype evidence, and source consistency.

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Matcher evaluation

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Marker evidence

Counts refer to proposal records, not distinct cell types.

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Review status

Curator review and marker support are separate evidence sources.

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Select a column heading to sort.
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How to interpret this audit

    Markdown summaryDownload audit JSON
    +

    Generated by soulcap-audit. Re-run the command to refresh this snapshot. No external scripts, fonts, or services are used.

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    + + + + diff --git a/reports/audit_data.json b/reports/audit_data.json new file mode 100644 index 0000000..017eeb0 --- /dev/null +++ b/reports/audit_data.json @@ -0,0 +1,133582 @@ +{ + "schema_version": 1, + "resolution_mode": "legacy", + "resolution_inputs": {}, + "generated_utc": "2026-09-11T04:13:51.094265+00:00", + "summary": { + "registered_entities": 127, + "source_rows": 127, + "mapping_records": 80, + "source_entities_with_proposals": 80, + "source_entities_without_proposals": 47, + "unresolved_source_rows": 0, + "uncertain_proposals": 8, + "invalid_marker_cells": 26, + "invalid_profile_rows": 23, + "evidence_statuses": { + "partial_support": 54, + "invalid_profile": 6, + "no_marker_support": 20 + }, + "review_statuses": { + "needs_review": 80 + }, + "marker_statuses": { + "mapped": 55, + "no_gene_mapping": 3, + "documented_nonprotein_or_reagent": 3, + "documented_complex_or_family": 10, + "source_artifact_needs_review": 4 + }, + "gap_records": 17, + "finding_severities": { + "error": 23, + "warning": 8, + "info": 81 + } + }, + "sources": [ + { + "subject_id": "SOULCAP:SC000001", + "sheet_row": 2, + "abbreviation": "NK", + "label": "Natural Killer Cell", + "parent": "", + "specimen": "", + "errors": [], + "profile_changed": false, + "tokens": [ + "CD11c", + "CD123", + "CD127", + "CD14", + "CD15", + "CD19", + "CD3", + "CD33", + "CD34", + "CD45", + "CD56", + "CD64", + "CD66b", + "HLA-DR" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "", + "Parent": "", + "Abbreviation": "NK", + "Full Name": "Natural Killer Cell", + "synonym": "", + "Type of Match": "Exact", + "OLS CL identifier": "", + "Required exclusion": "(CD14-|CD33-|CD64-) CD34- CD3- CD19- ", + "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD123-", + "Required phenotypic markers": "live/ CD45+ CD56+/hi CD127-", + "Ideal phenotypic markers": "[CD33-|CD64-]", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000001", + "legacy_subject_id": "SOULCAP:NK", + "abbreviation": "NK", + "subject_label": "Natural Killer Cell", + "cl_id": "CL:0000623", + "cl_label": "natural killer cell", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the defining positive CD56 marker is absent — a documented CL gap (cl_term_issues.md), not confirmed here.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001889", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "True" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "CD34:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD123:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD56:positive OR CD56:high)" + }, + { + "column": "Required phenotypic markers", + "clause": "CD127:negative" + }, + { + "column": "Ideal phenotypic markers", + "clause": "(CD33:negative OR CD64:negative)" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD20", + "CD3E" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "77102d43f9abced8b3efd2e11ad6d91a492bf101ebdb061a1fd67aaaa275c58c", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 2, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000002", + "sheet_row": 3, + "abbreviation": "NK2", + "label": "Natural Killer Cell 2", + "parent": "NK", + "specimen": "", + "errors": [], + "profile_changed": false, + "tokens": [ + "CD11c", + "CD123", + "CD127", + "CD14", + "CD15", + "CD16", + "CD19", + "CD3", + "CD33", + "CD34", + "CD45", + "CD56", + "CD57", + "CD64", + "CD66b", + "HLA-DR" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "", + "Parent": "NK", + "Abbreviation": "NK2", + "Full Name": "Natural Killer Cell 2", + "synonym": "", + "Type of Match": "Surface Only (SO)", + "OLS CL identifier": "", + "Required exclusion": "(CD14-|CD33-|CD64-) CD34- CD3- CD19- ", + "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD123-", + "Required phenotypic markers": "live/ CD45+ CD56hi CD127- CD16-/lo CD57- ", + "Ideal phenotypic markers": "", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000002", + "legacy_subject_id": "SOULCAP:NK2", + "abbreviation": "NK2", + "subject_label": "Natural Killer Cell 2", + "cl_id": "CL:0000938", + "cl_label": "CD16-negative, CD56-bright natural killer cell, human", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001889", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD56:high", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "RO:0015015", + "sense": "high", + "asserted": "True" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "(CD16:negative OR CD16:low)", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001483", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "CD34:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD123:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD127:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD57:negative" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD20", + "CD3E", + "CD84" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "a9e05f94e58b7fb289cf2f39044e4e9725e26448a3cd5681102b4c6d61ce1b72", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 3, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000003", + "sheet_row": 4, + "abbreviation": "CTNK", + "label": "Cytotoxice Natural Killer Cell", + "parent": "NK", + "specimen": "", + "errors": [], + "profile_changed": false, + "tokens": [ + "CD11c", + "CD123", + "CD127", + "CD14", + "CD15", + "CD16", + "CD19", + "CD3", + "CD33", + "CD34", + "CD45", + "CD56", + "CD64", + "CD66b", + "HLA-DR" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "", + "Parent": "NK", + "Abbreviation": "CTNK", + "Full Name": "Cytotoxice Natural Killer Cell", + "synonym": "", + "Type of Match": "SO and Cytokine", + "OLS CL identifier": "", + "Required exclusion": "(CD14-|CD33-|CD64-) CD34- CD3- CD19- ", + "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD123-", + "Required phenotypic markers": "live/ CD45+ CD56+/hi CD127- CD16+", + "Ideal phenotypic markers": "", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000003", + "legacy_subject_id": "SOULCAP:CTNK", + "abbreviation": "CTNK", + "subject_label": "Cytotoxic Natural Killer Cell", + "cl_id": "CL:0000939", + "cl_label": "CD16-positive, CD56-dim natural killer cell, human", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001889", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "(CD56:positive OR CD56:high)", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "RO:0015016", + "sense": "low", + "asserted": "True" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD16:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001483", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "CD34:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD123:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD127:negative" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD20", + "CD3E" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + 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CD45+ CD193+ CD123+", + "Ideal phenotypic markers": "", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000016", + "legacy_subject_id": "SOULCAP:Basophil_(WB)", + "abbreviation": "Basophil (WB)", + "subject_label": "Basophil", + "cl_id": "CL:0000043", + "cl_label": "mature basophil", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD193:positive", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001255", + "relation": "RO:0015015", + "sense": "high", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD123:positive", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001865", + "relation": "RO:0015015", + "sense": "high", + "asserted": "False" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD127:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD11B", + "CD154", + "CD203C", + "CD3E", + "CD40", + "CD40L", + "CD40LG", + "CD67", + "CD8", + "CD87", + "CD8A" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "b5e758e040d00ac23abae3ebc35dddae9abe67be32d404eb68c7345159c4132c", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 17, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000017", + "sheet_row": 18, + "abbreviation": "Mono", + "label": "Monocyte", + "parent": "", + "specimen": "WB and PBMC", + "errors": [ + { + "column": "Required exclusion", + "expression": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", + "error": "unexpected ')' in group" + } + ], + "profile_changed": false, + "tokens": [ + "CD11c", + "CD14", + "CD15", + "CD3", + "CD33", + "CD45", + "CD64", + "CD66b" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "WB and PBMC", + "Parent": "", + "Abbreviation": "Mono", + "Full Name": "Monocyte", + "synonym": "", + "Type of Match": "Exact", + "OLS CL identifier": "CL:0000576", + "Required exclusion": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", + "Ideal exclusion": "[CD15hi|CD66b+]- CD3-", + "Required phenotypic markers": "live/ CD45+ CD14+/- CD11c+/-", + "Ideal phenotypic markers": "(CD64+/-|CD33+)", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000017", + "legacy_subject_id": "SOULCAP:Mono", + "abbreviation": "Mono", + "subject_label": "Monocyte", + "cl_id": "CL:0000576", + "cl_label": "monocyte", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "sheet_confirmed", + "note": "OAK-verified exact label match (OLS4 was timing out); CL:0000576 has no marker axioms recorded at all. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "profile_sha256": "84c375696035c6d7c9de16751255259e8e834ac9287f201f13ed821a7bfdda5d", + "sheet_cl_id": "CL:0000576", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 18, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000018", + "sheet_row": 19, + "abbreviation": "CMo", + "label": "Classical Monocyte", + "parent": "Mono", + "specimen": "WB and PBMC", + "errors": [ + { + "column": "Required exclusion", + "expression": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", + "error": "unexpected ')' in group" + } + ], + "profile_changed": false, + "tokens": [ + "CD14", + "CD15", + "CD16", + "CD3", + "CD33", + "CD45", + "CD64", + "CD66b" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "WB and PBMC", + "Parent": "Mono", + "Abbreviation": "CMo", + "Full Name": "Classical Monocyte", + "synonym": "", + "Type of Match": "Exact", + "OLS CL identifier": "CL:0000860", + "Required exclusion": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", + "Ideal exclusion": "[CD15hi|CD66b+]- CD3- ", + "Required phenotypic markers": "live/ CD45+ CD14+ CD16-", + "Ideal phenotypic markers": "(CD64+|CD33+)", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000018", + "legacy_subject_id": "SOULCAP:CMo", + "abbreviation": "CMo", + "subject_label": "Classical Monocyte", + "cl_id": "CL:0000860", + "cl_label": "classical monocyte", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "sheet_confirmed", + "note": "OAK-verified exact label match. CL:0000860 asserts only CCR2 (CD192) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "profile_sha256": "4c9436c977492d1ccea66ec05a22925897e6235162061f41dbf8e4e09ac940e3", + "sheet_cl_id": "CL:0000860", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 19, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000019", + "sheet_row": 20, + "abbreviation": "NCMo", + "label": "Non-classical Monocyte", + "parent": "Mono", + "specimen": "WB and PBMC", + "errors": [ + { + "column": "Required exclusion", + "expression": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", + "error": "unexpected ')' in group" + } + ], + "profile_changed": false, + "tokens": [ + "CD14", + "CD15", + "CD16", + "CD3", + "CD33", + "CD45", + "CD64", + "CD66b" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "WB and PBMC", + "Parent": "Mono", + "Abbreviation": "NCMo", + "Full Name": "Non-classical Monocyte", + "synonym": "", + "Type of Match": "Exact", + "OLS CL identifier": "CL:0000875", + "Required exclusion": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", + "Ideal exclusion": "[CD15hi|CD66b+]- CD3- ", + "Required phenotypic markers": "live/ CD45+ CD14lo/- CD16+ ", + "Ideal phenotypic markers": "(CD64+/-|CD33+)", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000019", + "legacy_subject_id": "SOULCAP:NCMo", + "abbreviation": "NCMo", + "subject_label": "Non-classical Monocyte", + "cl_id": "CL:0000875", + "cl_label": "non-classical monocyte", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "sheet_confirmed", + "note": "OAK-verified exact label match. CL:0000875 asserts only CX3CR1 and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "profile_sha256": "2ccb34f2fc50e1126131986d487fe42c67bdcacc16330874b67750b017cbeab0", + "sheet_cl_id": "CL:0000875", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 20, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000020", + "sheet_row": 21, + "abbreviation": "IntMo", + "label": "Intermediate Monocyte", + "parent": "Mono", + "specimen": "WB and PBMC", + "errors": [ + { + "column": "Required exclusion", + "expression": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", + "error": "unexpected ')' in group" + } + ], + "profile_changed": false, + "tokens": [ + "CD14", + "CD15", + "CD16", + "CD3", + "CD33", + "CD45", + "CD64", + "CD66b" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "WB and PBMC", + "Parent": "Mono", + "Abbreviation": "IntMo", + "Full Name": "Intermediate Monocyte", + "synonym": "", + "Type of Match": "Exact", + "OLS CL identifier": "CL:0002393", + "Required exclusion": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", + "Ideal exclusion": "[CD15hi|CD66b+]- CD3- ", + "Required phenotypic markers": "live/ CD45+ CD14+ CD16hi ", + "Ideal phenotypic markers": "(CD64+|CD33+)", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000020", + "legacy_subject_id": "SOULCAP:IntMo", + "abbreviation": "IntMo", + "subject_label": "Intermediate Monocyte", + "cl_id": "CL:0002393", + "cl_label": "intermediate monocyte", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "sheet_confirmed", + "note": "OAK-verified exact label match. CL:0002393 asserts only CCR2 (CD192, negative) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "profile_sha256": "aa79f8b8798d9b79b35cd87edef7133ca5b824636f3f05d0dfe1b990d87d97c3", + "sheet_cl_id": "CL:0002393", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 21, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000021", + "sheet_row": 22, + "abbreviation": "Neut", + "label": "Neutrophil", + "parent": "", + "specimen": "WB and PBMC", + "errors": [], + "profile_changed": false, + "tokens": [ + "CD11c", + "CD123", + "CD14", + "CD15", + "CD16", + "CD19", + "CD193", + "CD3", + "CD33", + "CD45", + "CD56", + "CD64", + "CD66b", + "HLA-DR" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "WB and PBMC", + "Parent": "", + "Abbreviation": "Neut", + "Full Name": "Neutrophil", + "synonym": "", + "Type of Match": "Exact", + "OLS CL identifier": "", + "Required exclusion": "CD3- CD56- CD14lo/- CD123-", + "Ideal exclusion": "CD19- [HLA-DR+ CD11chi]-", + "Required phenotypic markers": "live/ CD45+ (CD15hi|CD66b+) CD193- CD16hi", + "Ideal phenotypic markers": "(CD64-|CD33+)", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000021", + "legacy_subject_id": "SOULCAP:Neutrophil", + "abbreviation": "Neutrophil", + "subject_label": "Neutrophil", + "cl_id": "CL:0000775", + "cl_label": "neutrophil", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "(CD15:high OR CD66B:positive)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001332", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "False" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:low OR CD14:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD123:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD193:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD16:high" + }, + { + "column": "Ideal phenotypic markers", + "clause": "(CD64:negative OR CD33:positive)" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD11B", + "CD32", + "CD3E", + "CD43", + "CD67", + "CD8", + "CD87", + "CD8A" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "6a7f385e7dd5e22ba96aeedb4aa46fb2e6ab411bc046567fac5d0aeb3ea7f587", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 22, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000022", + "sheet_row": 23, + "abbreviation": "Eos", + "label": "Eosinophil", + "parent": "", + "specimen": "WB", + "errors": [], + "profile_changed": false, + "tokens": [ + "CD11c", + "CD123", + "CD14", + "CD15", + "CD16", + "CD19", + "CD193", + "CD3", + "CD33", + "CD45", + "CD56", + "CD64", + "CD66b", + "HLA-DR" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "WB", + "Parent": "", + "Abbreviation": "Eos", + "Full Name": "Eosinophil", + "synonym": "", + "Type of Match": "Exact", + "OLS CL identifier": "", + "Required exclusion": "CD3- CD56- CD14lo/- CD123-", + "Ideal exclusion": "CD19- [HLA-DR+ CD11chi]-", + "Required phenotypic markers": "live/ CD45+ (CD15hi|CD66b+) CD193+ CD16- ", + "Ideal phenotypic markers": "(CD64-|CD33+)", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000022", + "legacy_subject_id": "SOULCAP:Eosinophil", + "abbreviation": "Eosinophil", + "subject_label": "Eosinophil", + "cl_id": "CL:0000771", + "cl_label": "eosinophil", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "CD193 (CCR3) positive is directly asserted (not inferred) on CL:0000771, precisely matching SOULCAP's defining CD193+ requirement — one of the stronger marker-confirmed matches in this set.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "(CD15:high OR CD66B:positive)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001332", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD193:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001255", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:low OR CD14:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD123:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD16:negative" + }, + { + "column": "Ideal phenotypic markers", + "clause": "(CD64:negative OR CD33:positive)" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD11B", + "CD191", + "CD3E", + "CD44", + "CD67", + "CD69", + "CD8", + "CD87", + "CD8A", + "CD9", + "CDW44" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "874205816800964db5c591f96652bdac9d28acef6907b20275b346c4e2cc3524", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 23, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000023", + "sheet_row": 24, + "abbreviation": "B cell", + "label": "B cell", + "parent": "", + "specimen": "", + "errors": [], + "profile_changed": false, + "tokens": [ + "CD11c", + "CD123", + "CD127", + "CD14", + "CD15", + "CD16", + "CD19", + "CD20", + "CD3", + "CD33", + "CD45", + "CD56", + "CD64", + "CD66b", + "HLA-DR" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "", + "Parent": "", + "Abbreviation": "B cell", + "Full Name": "B cell", + "synonym": "", + "Type of Match": "Exact", + "OLS CL identifier": "", + "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-", + "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-", + "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+)", + "Ideal phenotypic markers": "CD20+", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000023", + "legacy_subject_id": "SOULCAP:B_cell", + "abbreviation": "B cell", + "subject_label": "B cell", + "cl_id": "CL:0000236", + "cl_label": "B cell", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "OLS4 REST search returned zero hits for this exact query; found instead via OAK. 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match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had over-specified to an NKp44+ subtype.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD127:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001869", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "False" + }, + { + "pr": "PR:P16871", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD34:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD123:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD56:low OR CD56:negative)" + }, + { + "column": "Required phenotypic markers", + "clause": "CD117:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD294:negative" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD3E", + "CDW127" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "60bbd7b2b4b6bd74a25764ca423e651165008b0e6d59552268caf45876ec18f8", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 11, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000011", + "legacy_subject_id": "SOULCAP:cDC", + "abbreviation": "cDC", + "subject_label": "Conventional Dendritic Cell", + "cl_id": "CL:0000990", + "cl_label": "conventional dendritic cell", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "Marker-axiom scoring returned unrelated candidates; 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match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had wrongly assigned cDC1 the same term as cDC2.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "(CD123:not:high OR CD193:negative)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001865", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "(CD123:not:high OR CD303:negative)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001865", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD11C:high", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001013", + "relation": "RO:0015015", + "sense": "high", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD141:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000002105", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "CD14:negative" + }, + { + "column": "Required exclusion", + "clause": "CD16:negative" + }, + { + "column": "Ideal exclusion", + "clause": "CD127:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD33:high OR CD64:positive)" + }, + { + "column": "Required phenotypic markers", + "clause": "HLA-DR:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD1C:negative" + }, + { + "column": "Ideal phenotypic markers", + "clause": "CD172A:negative" + }, + { + "column": "Ideal phenotypic markers", + "clause": "FCER1A:negative" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD20", + "CD34", + "CD3E" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "26b00ac7a3eecc08344c5062dce97e2ccfd3a591c8a347be9f155b32e0128b25", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 13, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000013", + "legacy_subject_id": "SOULCAP:cDC2", + "abbreviation": "cDC2", + "subject_label": "Conventional Dendritic Cell 2", + "cl_id": "CL:0002399", + "cl_label": "CD1c-positive myeloid dendritic cell", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "Marker-axiom scoring returned unrelated candidates; 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match is lexical/name-based only. Sheet's Full Name reads 'Peripheral Dendritic Cell' (likely a typo for 'Plasmacytoid'); not yet corrected at source.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD14:negative", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001889", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Ideal exclusion", + "clause": "CD127:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD16:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD33:low OR CD33:positive OR CD123:high)" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD193:negative OR FCER1A:negative OR CD303:positive)" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD11C", + "CD20", + "CD34", + "CD3E" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "90a3916e208c3f3f041f7567896fcd45d341337251da243d921d8127b8562d71", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 15, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000015", + "legacy_subject_id": "SOULCAP:Basophil_(PBMC)", + "abbreviation": "Basophil (PBMC)", + "subject_label": "Basophil", + "cl_id": "CL:0000043", + "cl_label": "mature basophil", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "(CD33:positive OR CD123:positive)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001865", + "relation": "RO:0015015", + "sense": "high", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "(CD193:positive OR FCER1A:positive OR HLA-DR:negative OR CD303:negative)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001255", + "relation": "RO:0015015", + "sense": "high", + "asserted": "False" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Ideal exclusion", + "clause": "CD127:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD14:negative" + }, + { + "column": "Ideal exclusion", + "clause": "CD16:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Ideal phenotypic markers", + "clause": "FCER1A:positive" + }, + { + "column": "Ideal phenotypic markers", + "clause": "HLA-DR:negative" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD11B", + "CD154", + "CD203C", + "CD3E", + "CD40", + "CD40L", + "CD40LG", + "CD67", + "CD8", + "CD87", + "CD8A" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "6ae772d0622c8988d15f047ef4570ab309a99edce893328ef9c815aec7e0c1b3", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 16, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000016", + "legacy_subject_id": "SOULCAP:Basophil_(WB)", + "abbreviation": "Basophil (WB)", + "subject_label": "Basophil", + "cl_id": "CL:0000043", + "cl_label": "mature basophil", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD193:positive", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001255", + "relation": "RO:0015015", + "sense": "high", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD123:positive", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001865", + "relation": "RO:0015015", + "sense": "high", + "asserted": "False" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD127:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD11B", + "CD154", + "CD203C", + "CD3E", + "CD40", + "CD40L", + "CD40LG", + "CD67", + "CD8", + "CD87", + "CD8A" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "b5e758e040d00ac23abae3ebc35dddae9abe67be32d404eb68c7345159c4132c", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 17, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000017", + "legacy_subject_id": "SOULCAP:Mono", + "abbreviation": "Mono", + "subject_label": "Monocyte", + "cl_id": "CL:0000576", + "cl_label": "monocyte", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "sheet_confirmed", + "note": "OAK-verified exact label match (OLS4 was timing out); CL:0000576 has no marker axioms recorded at all. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "profile_sha256": "84c375696035c6d7c9de16751255259e8e834ac9287f201f13ed821a7bfdda5d", + "sheet_cl_id": "CL:0000576", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 18, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000018", + "legacy_subject_id": "SOULCAP:CMo", + "abbreviation": "CMo", + "subject_label": "Classical Monocyte", + "cl_id": "CL:0000860", + "cl_label": "classical monocyte", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "sheet_confirmed", + "note": "OAK-verified exact label match. CL:0000860 asserts only CCR2 (CD192) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "profile_sha256": "4c9436c977492d1ccea66ec05a22925897e6235162061f41dbf8e4e09ac940e3", + "sheet_cl_id": "CL:0000860", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 19, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000019", + "legacy_subject_id": "SOULCAP:NCMo", + "abbreviation": "NCMo", + "subject_label": "Non-classical Monocyte", + "cl_id": "CL:0000875", + "cl_label": "non-classical monocyte", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "sheet_confirmed", + "note": "OAK-verified exact label match. CL:0000875 asserts only CX3CR1 and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "profile_sha256": "2ccb34f2fc50e1126131986d487fe42c67bdcacc16330874b67750b017cbeab0", + "sheet_cl_id": "CL:0000875", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 20, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000020", + "legacy_subject_id": "SOULCAP:IntMo", + "abbreviation": "IntMo", + "subject_label": "Intermediate Monocyte", + "cl_id": "CL:0002393", + "cl_label": "intermediate monocyte", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "sheet_confirmed", + "note": "OAK-verified exact label match. CL:0002393 asserts only CCR2 (CD192, negative) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "profile_sha256": "aa79f8b8798d9b79b35cd87edef7133ca5b824636f3f05d0dfe1b990d87d97c3", + "sheet_cl_id": "CL:0002393", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 21, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000021", + "legacy_subject_id": "SOULCAP:Neutrophil", + "abbreviation": "Neutrophil", + "subject_label": "Neutrophil", + "cl_id": "CL:0000775", + "cl_label": "neutrophil", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "(CD15:high OR CD66B:positive)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001332", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "False" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:low OR CD14:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD123:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD193:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD16:high" + }, + { + "column": "Ideal phenotypic markers", + "clause": "(CD64:negative OR CD33:positive)" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD11B", + "CD32", + "CD3E", + "CD43", + "CD67", + "CD8", + "CD87", + "CD8A" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "6a7f385e7dd5e22ba96aeedb4aa46fb2e6ab411bc046567fac5d0aeb3ea7f587", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 22, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000022", + "legacy_subject_id": "SOULCAP:Eosinophil", + "abbreviation": "Eosinophil", + "subject_label": "Eosinophil", + "cl_id": "CL:0000771", + "cl_label": "eosinophil", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "CD193 (CCR3) positive is directly asserted (not inferred) on CL:0000771, precisely matching SOULCAP's defining CD193+ requirement — one of the stronger marker-confirmed matches in this set.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "(CD15:high OR CD66B:positive)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001332", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD193:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001255", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:low OR CD14:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD123:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD16:negative" + }, + { + "column": "Ideal phenotypic markers", + "clause": "(CD64:negative OR CD33:positive)" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD11B", + "CD191", + "CD3E", + "CD44", + "CD67", + "CD69", + "CD8", + "CD87", + "CD8A", + "CD9", + "CDW44" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "874205816800964db5c591f96652bdac9d28acef6907b20275b346c4e2cc3524", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 23, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000023", + "legacy_subject_id": "SOULCAP:B_cell", + "abbreviation": "B cell", + "subject_label": "B cell", + "cl_id": "CL:0000236", + "cl_label": "B cell", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "OLS4 REST search returned zero hits for this exact query; found instead via OAK. CL:0000236 has no marker axioms recorded.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "no_marker_support", + "matched": [], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD3:negative" + }, + { + "column": "Required exclusion", + "clause": "CD56:negative" + }, + { + "column": "Ideal exclusion", + "clause": "CD127:negative" + }, + { + "column": "Ideal exclusion", + "clause": "CD16:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "CD123:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD20:positive OR CD19:positive)" + }, + { + "column": "Ideal phenotypic markers", + "clause": "CD20:positive" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "a0300906ff3acd98f58b8ebb9443d973b9710447d8ab4736aa111ae172b1df78", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 24, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000024", + "legacy_subject_id": "SOULCAP:ASC", + "abbreviation": "ASC", + "subject_label": "Antibody Secreting Cell", + "cl_id": "CL:0000946", + "cl_label": "antibody secreting cell", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "Lexical match; 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"match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "OLS4 REST search returned zero hits for this exact query; found instead via OAK. CL:0000236 has no marker axioms recorded.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "no_marker_support", + "matched": [], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD3:negative" + }, + { + "column": "Required exclusion", + "clause": "CD56:negative" + }, + { + "column": "Ideal exclusion", + "clause": "CD127:negative" + }, + { + "column": "Ideal exclusion", + "clause": "CD16:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "CD123:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD20:positive OR CD19:positive)" + }, + { + "column": "Ideal phenotypic markers", + "clause": "CD20:positive" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "a0300906ff3acd98f58b8ebb9443d973b9710447d8ab4736aa111ae172b1df78", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 24, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ] + }, + { + "cl_id": "CL:0000576", + "label": "monocyte", + "subject_ids": [ + "SOULCAP:SC000017" + ], + "relations": [ + "Exact" + ], + "mappings": [ + { + "subject_id": "SOULCAP:SC000017", + "legacy_subject_id": "SOULCAP:Mono", + "abbreviation": "Mono", + "subject_label": "Monocyte", + "cl_id": "CL:0000576", + "cl_label": "monocyte", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "sheet_confirmed", + "note": "OAK-verified exact label match (OLS4 was timing out); CL:0000576 has no marker axioms recorded at all. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "profile_sha256": "84c375696035c6d7c9de16751255259e8e834ac9287f201f13ed821a7bfdda5d", + "sheet_cl_id": "CL:0000576", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 18, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ] + }, + { + "cl_id": "CL:0000623", + "label": "natural killer cell", + "subject_ids": [ + "SOULCAP:SC000001" + ], + "relations": [ + "Exact" + ], + "mappings": [ + { + "subject_id": "SOULCAP:SC000001", + "legacy_subject_id": "SOULCAP:NK", + "abbreviation": "NK", + "subject_label": "Natural Killer Cell", + "cl_id": "CL:0000623", + "cl_label": "natural killer cell", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the defining positive CD56 marker is absent — a documented CL gap (cl_term_issues.md), not confirmed here.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001889", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "True" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "CD34:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD123:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD56:positive OR CD56:high)" + }, + { + "column": "Required phenotypic markers", + "clause": "CD127:negative" + }, + { + "column": "Ideal phenotypic markers", + "clause": "(CD33:negative OR CD64:negative)" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD20", + "CD3E" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "77102d43f9abced8b3efd2e11ad6d91a492bf101ebdb061a1fd67aaaa275c58c", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 2, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ] + }, + { + "cl_id": "CL:0000624", + "label": "CD4-positive, alpha-beta T cell", + "subject_ids": [ + "SOULCAP:SC000062", + "SOULCAP:SC000066" + ], + "relations": [ + "Broad", + "Exact" + ], + "mappings": [ + { + "subject_id": "SOULCAP:SC000066", + "legacy_subject_id": "SOULCAP:CD4+_TCRab_T_cell", + "abbreviation": "CD4+ TCRab T cell", + "subject_label": "CD4+ alpha/beta T cell", + "cl_id": "CL:0000624", + "cl_label": "CD4-positive, alpha-beta T cell", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "OAK-verified.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required phenotypic markers", + "clause": "CD4:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001004", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD8:negative", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000025402", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)" + }, + { + "column": "Required exclusion", + "clause": "(CD19:negative OR CD20:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD123:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD16:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD3:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "(TCRAB:positive OR TCRGD:negative)" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "3509d97ed33d109d83671dd2292c0945863b4eeead30a216c95cfb9c41c4a5f9", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 49, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000062", + "legacy_subject_id": "SOULCAP:CD4+_T_cell", + "abbreviation": "CD4+ T cell", + "subject_label": "alpha/beta and gamma/delta CD4+ T cells", + "cl_id": "CL:0000624", + "cl_label": "CD4-positive, alpha-beta T cell", + "match_type": "Broad", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "CL has no combined alpha-beta+gamma-delta CD4+ term; alpha-beta dominates the CD4+ compartment.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required phenotypic markers", + "clause": "CD4:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001004", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD8:negative", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000025402", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)" + }, + { + "column": "Required exclusion", + "clause": "(CD19:negative OR CD20:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD123:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD16:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD3:positive" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "13a042caf6eaa90447c12e475dcdeb8c94ab2c34f1847f43c379e4aff9aa0435", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 52, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ] + }, + { + "cl_id": "CL:0000625", + "label": "CD8-positive, alpha-beta T cell", + "subject_ids": [ + "SOULCAP:SC000063", + "SOULCAP:SC000067" + ], + "relations": [ + "Broad", + "Exact" + ], + "mappings": [ + { + "subject_id": "SOULCAP:SC000067", + "legacy_subject_id": "SOULCAP:CD8+_TCRab_T_cell", + "abbreviation": "CD8+ TCRab T cell", + "subject_label": "CD8+ alpha/beta T cell", + "cl_id": "CL:0000625", + "cl_label": "CD8-positive, alpha-beta T cell", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "OAK-verified.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required phenotypic markers", + "clause": "CD4:negative", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001004", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "True" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD8:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001084", + "relation": "BFO:0000051", + "sense": "positive", + "asserted": "False" + }, + { + "pr": "PR:000025402", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + }, + { + "pr": "PR:000025403", + "relation": "BFO:0000051", + "sense": "positive", + "asserted": "False" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)" + }, + { + "column": "Required exclusion", + "clause": "(CD19:negative OR CD20:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD123:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD16:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD3:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "(TCRAB:positive OR TCRGD:negative)" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD8A" + ], + "errors": [], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "5f511184f5b3fb48855d4ce1b1ed1777e79ca590353b921e6c8b66c7e79e2c17", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 50, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000063", + "legacy_subject_id": "SOULCAP:CD8+_T_cell", + "abbreviation": "CD8+ T cell", + "subject_label": "alpha/beta and gamma/delta CD8+ T cells", + "cl_id": "CL:0000625", + "cl_label": "CD8-positive, alpha-beta T cell", + "match_type": "Broad", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "Same reasoning as CD4+ T cell.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + 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}, + { + "cl_id": "CL:0000771", + "label": "eosinophil", + "subject_ids": [ + "SOULCAP:SC000022" + ], + "relations": [ + "Exact" + ], + "mappings": [ + { + "subject_id": "SOULCAP:SC000022", + "legacy_subject_id": "SOULCAP:Eosinophil", + "abbreviation": "Eosinophil", + "subject_label": "Eosinophil", + "cl_id": "CL:0000771", + "cl_label": "eosinophil", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "CD193 (CCR3) positive is directly asserted (not inferred) on CL:0000771, precisely matching SOULCAP's defining CD193+ requirement — one of the stronger marker-confirmed matches in this set.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": 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"assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD11C:high", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001013", + "relation": "RO:0015015", + "sense": "high", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD123:not:high OR CD193:negative)" + }, + { + "column": "Required exclusion", + "clause": "(CD123:not:high OR CD303:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD14:negative" + }, + { + "column": "Required exclusion", + "clause": "CD16:negative" + }, + { + "column": "Ideal exclusion", + "clause": "CD127:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD33:high OR CD64:positive)" + }, + { + "column": "Required phenotypic markers", + "clause": "HLA-DR:positive" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD20", + "CD34", + "CD3E" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "334dd74448fec5173d10655dacd2b628cd103b346f3c6a7b37b061edc4ac9fa6", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 12, + "evidence_links": [ + { + "label": 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Sheet's Full Name reads 'Peripheral Dendritic Cell' (likely a typo for 'Plasmacytoid'); not yet corrected at source.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD14:negative", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001889", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Ideal exclusion", + "clause": "CD127:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD16:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD33:low OR CD33:positive OR CD123:high)" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD193:negative OR FCER1A:negative OR CD303:positive)" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD11C", + "CD20", + "CD34", + "CD3E" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "90a3916e208c3f3f041f7567896fcd45d341337251da243d921d8127b8562d71", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 15, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ] + }, + { + "cl_id": "CL:0001065", + "label": "innate lymphoid cell", + "subject_ids": [ + "SOULCAP:SC000007" + ], + "relations": [ + "Exact" + ], + "mappings": [ + { + "subject_id": "SOULCAP:SC000007", + "legacy_subject_id": "SOULCAP:ILC", + "abbreviation": "ILC", + "subject_label": "Innate Lymphoid Cell", + "cl_id": "CL:0001065", + "cl_label": "innate lymphoid cell", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, not CL-marker-supported.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "True" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD19:negative", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "True" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD3:negative", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD34:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD123:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD127:positive" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD3E" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "2382ffa8b1693854f19ee2104691b9f0a0c23f6e976b56d1c507692da08d12fc", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 8, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ] + }, + { + "cl_id": "CL:0001067", + "label": "group 1 innate lymphoid cell", + "subject_ids": [ + "SOULCAP:SC000008" + ], + "relations": [ + "Exact" + ], + "mappings": [ + { + "subject_id": "SOULCAP:SC000008", + "legacy_subject_id": "SOULCAP:ILC1", + "abbreviation": "ILC1", + "subject_label": "Innate Lymphoid Cell 1", + "cl_id": "CL:0001067", + "cl_label": "group 1 innate lymphoid cell", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only. No human-specific CL term exists for group 1 (unlike group 2/3); filed as CL gap, repo issue #14.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD34:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD123:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD127:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD56:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD117:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD294:negative" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD3E" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "0a749f50550a7edd93adce27f94a7302c0dbc59107a2eaae2cf44d03133a6568", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 9, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ] + }, + { + "cl_id": "CL:0001074", + "label": "CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human", + "subject_ids": [ + "SOULCAP:SC000006" + ], + "relations": [ + "Broad" + ], + "mappings": [ + { + "subject_id": "SOULCAP:SC000006", + "legacy_subject_id": "SOULCAP:ILCp", + "abbreviation": "ILCp", + "subject_label": "Innate Lymphoid Cell Progenitor", + "cl_id": "CL:0001074", + "cl_label": "CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human", + "match_type": "Broad", + "uncertain": true, + "review_status": "needs_review", + "evidence_override": "", + "note": "SOULCAP profile does not test CD34; CL:0001073 (CD34-negative) and CL:0001082 (immature innate lymphoid cell) are equally marker-consistent alternatives, not ruled out.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required phenotypic markers", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD56:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "False" + }, + { + "pr": "PR:P13591", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD117:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000002065", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "False" + }, + { + "pr": "PR:P10721", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD127:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD294:negative" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD19", + "CD34", + "CD3E" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "03443463d5f102ae603565b7efde6d5b2de1f1f9c96016ecffdf886dd673995e", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 7, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ] + }, + { + "cl_id": "CL:0001078", + "label": "group 3 innate lymphoid cell, human", + "subject_ids": [ + "SOULCAP:SC000010" + ], + "relations": [ + "Exact" + ], + "mappings": [ + { + "subject_id": "SOULCAP:SC000010", + "legacy_subject_id": "SOULCAP:ILC3", + "abbreviation": "ILC3", + "subject_label": "Innate Lymphoid Cell 3", + "cl_id": "CL:0001078", + "cl_label": "group 3 innate lymphoid cell, human", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had over-specified to an NKp44+ subtype.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD127:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001869", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "False" + }, + { + "pr": "PR:P16871", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD34:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD123:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD56:low OR CD56:negative)" + }, + { + "column": "Required phenotypic markers", + "clause": "CD117:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD294:negative" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD3E", + "CDW127" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "60bbd7b2b4b6bd74a25764ca423e651165008b0e6d59552268caf45876ec18f8", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 11, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ] + }, + { + "cl_id": "CL:0001081", + "label": "group 2 innate lymphoid cell, human", + "subject_ids": [ + "SOULCAP:SC000009" + ], + "relations": [ + "Exact" + ], + "mappings": [ + { + "subject_id": "SOULCAP:SC000009", + "legacy_subject_id": "SOULCAP:ILC2", + "abbreviation": "ILC2", + "subject_label": "Innate Lymphoid Cell 2", + "cl_id": "CL:0001081", + "cl_label": "group 2 innate lymphoid cell, human", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had picked the wrong-species term.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD127:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001869", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "False" + }, + { + "pr": "PR:P16871", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD294:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:Q9Y5Y4", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD34:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD123:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD56:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD117:low OR CD117:negative)" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD161", + "CD25", + "CD3E", + "CDW127" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "735345c450434e1f351231103ee6c81f7e0ba186fb9ce20230642a95b44c7a23", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 10, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ] + }, + { + "cl_id": "CL:0002393", + "label": "intermediate monocyte", + "subject_ids": [ + "SOULCAP:SC000020" + ], + "relations": [ + "Exact" + ], + "mappings": [ + { + "subject_id": "SOULCAP:SC000020", + "legacy_subject_id": "SOULCAP:IntMo", + "abbreviation": "IntMo", + "subject_label": "Intermediate Monocyte", + "cl_id": "CL:0002393", + "cl_label": "intermediate monocyte", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "sheet_confirmed", + "note": "OAK-verified exact label match. CL:0002393 asserts only CCR2 (CD192, negative) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "profile_sha256": "aa79f8b8798d9b79b35cd87edef7133ca5b824636f3f05d0dfe1b990d87d97c3", + "sheet_cl_id": "CL:0002393", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 21, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ] + }, + { + "cl_id": "CL:0002394", + "label": "CD141-positive myeloid dendritic cell", + "subject_ids": [ + "SOULCAP:SC000012" + ], + "relations": [ + "Exact" + ], + "mappings": [ + { + "subject_id": "SOULCAP:SC000012", + "legacy_subject_id": "SOULCAP:cDC1", + "abbreviation": "cDC1", + "subject_label": "Conventional Dendritic Cell 1", + "cl_id": "CL:0002394", + "cl_label": "CD141-positive myeloid dendritic cell", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had wrongly assigned cDC1 the same term as cDC2.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "(CD123:not:high OR CD193:negative)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001865", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "(CD123:not:high OR CD303:negative)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001865", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD11C:high", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001013", + "relation": "RO:0015015", + "sense": "high", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD141:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000002105", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "CD14:negative" + }, + { + "column": "Required exclusion", + "clause": "CD16:negative" + }, + { + "column": "Ideal exclusion", + "clause": "CD127:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD33:high OR CD64:positive)" + }, + { + "column": "Required phenotypic markers", + "clause": "HLA-DR:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD1C:negative" + }, + { + "column": "Ideal phenotypic markers", + "clause": "CD172A:negative" + }, + { + "column": "Ideal phenotypic markers", + "clause": "FCER1A:negative" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD20", + "CD34", + "CD3E" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "26b00ac7a3eecc08344c5062dce97e2ccfd3a591c8a347be9f155b32e0128b25", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 13, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ] + }, + { + "cl_id": "CL:0002399", + "label": "CD1c-positive myeloid dendritic cell", + "subject_ids": [ + "SOULCAP:SC000013" + ], + "relations": [ + "Exact" + ], + "mappings": [ + { + "subject_id": "SOULCAP:SC000013", + "legacy_subject_id": "SOULCAP:cDC2", + "abbreviation": "cDC2", + "subject_label": "Conventional Dendritic Cell 2", + "cl_id": "CL:0002399", + "cl_label": "CD1c-positive myeloid dendritic cell", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed correct by cross-check against cDC1.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "(CD123:not:high OR CD193:negative)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001865", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "(CD123:not:high OR CD303:negative)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001865", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD3:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001020", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD11C:high", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001013", + "relation": "RO:0015015", + "sense": "high", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD1C:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000002027", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "CD14:negative" + }, + { + "column": "Required exclusion", + "clause": "CD16:negative" + }, + { + "column": "Ideal exclusion", + "clause": "CD127:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD33:high OR CD64:positive)" + }, + { + "column": "Required phenotypic markers", + "clause": "HLA-DR:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD141:low OR CD141:negative)" + }, + { + "column": "Ideal phenotypic markers", + "clause": "CD172A:positive" + }, + { + "column": "Ideal phenotypic markers", + "clause": "(FCER1A:low OR FCER1A:negative)" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD20", + "CD34", + "CD3E" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "3e6dc30f6e3ac086a6d06bc8b78c27895cba0f8f343c29a212dd2cb02d6dddee", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 14, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + } + ] + }, + { + "cl_id": "CL:4030002", + "label": "effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated", + "subject_ids": [ + "SOULCAP:SC000103" + ], + "relations": [ + "Exact" + ], + "mappings": [ + { + "subject_id": "SOULCAP:SC000103", + "legacy_subject_id": "SOULCAP:CD4+_TCRab_Temra", + "abbreviation": "CD4+ TCRab Temra", + "subject_label": "CD4+ CD45RA+ effector memory alpha/beta T cell", + "cl_id": "CL:4030002", + "cl_label": "effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "OAK-verified. 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CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required phenotypic markers", + "clause": "CD56:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "False" + }, + { + "pr": "PR:P13591", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)" + }, + { + "column": "Required exclusion", + "clause": "(CD19:negative OR CD20:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD123:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD16:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD3:positive" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "63ee8683e94c984697c75d473a3e9d0405de2bafb176fbbb7535c16485178719", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "registry_row": 61, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000047", + "legacy_subject_id": "SOULCAP:CD56+_CD4_T_cell", + "abbreviation": "CD56+ CD4 T cell", + "subject_label": "CD56+ CD4 T cell", + "cl_id": "CL:4052055", + "cl_label": "mature NK T cell, human", + "match_type": "Broad", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). 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not externally verified." + }, + { + "marker_token": "CD117", + "affected_subjects": [ + "SOULCAP:SC000006", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010" + ], + "records": [ + { + "marker_token": "CD117", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:000002065", + "pro_label": "mast/stem cell growth factor receptor", + "uniprot_id": "P10721", + "uniprot_label": "mast/stem cell growth factor receptor", + "gene_symbol": "KIT", + "hgnc_id": "HGNC:6342", + "ncbi_gene_id": "", + "mapping_method": "cl_pro_tsv", + "confidence": "high", + "evidence": "reports/cl_pro_relationships.tsv", + "notes": "" + } + ], + "pro_ids": [ + "PR:000002065" + ], + "gene_symbols": [ + "KIT" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "CD11c", + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000017", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000059", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000074", + "SOULCAP:SC000075", + "SOULCAP:SC000076", + "SOULCAP:SC000077", + "SOULCAP:SC000078", + "SOULCAP:SC000079", + "SOULCAP:SC000080", + "SOULCAP:SC000081", + "SOULCAP:SC000082", + "SOULCAP:SC000083", + "SOULCAP:SC000084", + "SOULCAP:SC000085", + "SOULCAP:SC000086", + "SOULCAP:SC000087", + "SOULCAP:SC000088", + "SOULCAP:SC000089", + "SOULCAP:SC000090", + "SOULCAP:SC000091", + "SOULCAP:SC000092", + "SOULCAP:SC000093", + "SOULCAP:SC000094", + "SOULCAP:SC000095", + "SOULCAP:SC000096", + "SOULCAP:SC000097", + "SOULCAP:SC000098", + "SOULCAP:SC000099", + "SOULCAP:SC000100", + "SOULCAP:SC000101", + "SOULCAP:SC000102", + "SOULCAP:SC000103", + "SOULCAP:SC000104", + "SOULCAP:SC000105", + "SOULCAP:SC000106", + "SOULCAP:SC000107", + "SOULCAP:SC000108", + "SOULCAP:SC000109", + "SOULCAP:SC000110", + "SOULCAP:SC000111", + "SOULCAP:SC000112", + "SOULCAP:SC000113", + "SOULCAP:SC000114", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000120", + "SOULCAP:SC000121", + "SOULCAP:SC000122", + "SOULCAP:SC000123", + "SOULCAP:SC000124", + "SOULCAP:SC000125", + "SOULCAP:SC000126", + "SOULCAP:SC000127" + ], + "records": [ + { + "marker_token": "CD11c", + "marker_synonyms": "", + "source_columns": "Ideal exclusion|Required phenotypic markers", + "pro_id": "PR:000001013", + "pro_label": "integrin alpha-X", + "uniprot_id": "P20702", + "uniprot_label": "integrin alpha-X", + "gene_symbol": "ITGAX", + "hgnc_id": "HGNC:6152", + "ncbi_gene_id": "", + "mapping_method": "cl_pro_tsv", + "confidence": "high", + "evidence": "reports/cl_pro_relationships.tsv", + "notes": "" + } + ], + "pro_ids": [ + "PR:000001013" + ], + "gene_symbols": [ + "ITGAX" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; 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this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "CD56", + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000006", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000014", + "SOULCAP:SC000015", + "SOULCAP:SC000016", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058" + ], + "records": [ + { + "marker_token": "CD56", + "marker_synonyms": "", + "source_columns": "Ideal exclusion|Required exclusion|Required phenotypic markers", + "pro_id": "PR:000001024", + "pro_label": "neural cell adhesion molecule 1", + "uniprot_id": "P13591", + "uniprot_label": "neural cell adhesion molecule 1", + "gene_symbol": "NCAM1", + "hgnc_id": "HGNC:7656", + "ncbi_gene_id": "", + "mapping_method": "cl_pro_tsv", + "confidence": "high", + "evidence": "reports/cl_pro_relationships.tsv", + "notes": "" + } + ], + "pro_ids": [ + "PR:000001024" + ], + "gene_symbols": [ + "NCAM1" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "CD57", + "affected_subjects": [ + "SOULCAP:SC000002", + "SOULCAP:SC000004", + "SOULCAP:SC000005" + ], + "records": [ + { + "marker_token": "CD57", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "ols4", + "confidence": "low", + "evidence": "https://www.ebi.ac.uk/ols4/api/search?q=CD57&ontology=pr", + "notes": "B3GAT1 / HNK-1 epitope; HNK-1 carbohydrate epitope synthesised by B3GAT1" + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_nonprotein_or_reagent", + "status_reason": "Registry notes document a non-protein gate or reagent; a single gene/PRO mapping may not apply.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "CD64", + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000017", + "SOULCAP:SC000018", + "SOULCAP:SC000019", + "SOULCAP:SC000020", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000059", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000074", + "SOULCAP:SC000075", + "SOULCAP:SC000076", + "SOULCAP:SC000077", + "SOULCAP:SC000078", + "SOULCAP:SC000079", + "SOULCAP:SC000080", + "SOULCAP:SC000081", + "SOULCAP:SC000082", + "SOULCAP:SC000083", + "SOULCAP:SC000084", + "SOULCAP:SC000085", + "SOULCAP:SC000086", + "SOULCAP:SC000087", + "SOULCAP:SC000088", + "SOULCAP:SC000089", + "SOULCAP:SC000090", + "SOULCAP:SC000091", + "SOULCAP:SC000092", + "SOULCAP:SC000093", + "SOULCAP:SC000094", + "SOULCAP:SC000095", + "SOULCAP:SC000096", + "SOULCAP:SC000097", + "SOULCAP:SC000098", + "SOULCAP:SC000099", + "SOULCAP:SC000100", + "SOULCAP:SC000101", + "SOULCAP:SC000102", + "SOULCAP:SC000103", + "SOULCAP:SC000104", + "SOULCAP:SC000105", + "SOULCAP:SC000106", + "SOULCAP:SC000107", + "SOULCAP:SC000108", + "SOULCAP:SC000109", + "SOULCAP:SC000110", + "SOULCAP:SC000111", + "SOULCAP:SC000112", + "SOULCAP:SC000113", + "SOULCAP:SC000114", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000120", + "SOULCAP:SC000121", + "SOULCAP:SC000122", + "SOULCAP:SC000123", + "SOULCAP:SC000124", + "SOULCAP:SC000125", + "SOULCAP:SC000126", + "SOULCAP:SC000127" + ], + "records": [ + { + "marker_token": "CD64", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers|Required exclusion|Required phenotypic markers", + "pro_id": "PR:000001465", + "pro_label": "high affinity immunoglobulin gamma Fc receptor I", + "uniprot_id": "P12314", + "uniprot_label": "high affinity immunoglobulin gamma Fc receptor I", + "gene_symbol": "FCGR1A", + "hgnc_id": "HGNC:3613", + "ncbi_gene_id": "", + "mapping_method": "cl_pro_tsv", + "confidence": "high", + "evidence": "reports/cl_pro_relationships.tsv", + "notes": "" + } + ], + "pro_ids": [ + "PR:000001465" + ], + "gene_symbols": [ + "FCGR1A" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "CD66b", + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000014", + "SOULCAP:SC000015", + "SOULCAP:SC000016", + "SOULCAP:SC000017", + "SOULCAP:SC000018", + "SOULCAP:SC000019", + "SOULCAP:SC000020", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000059", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000074", + "SOULCAP:SC000075", + "SOULCAP:SC000076", + "SOULCAP:SC000077", + "SOULCAP:SC000078", + "SOULCAP:SC000079", + "SOULCAP:SC000080", + "SOULCAP:SC000081", + "SOULCAP:SC000082", + "SOULCAP:SC000083", + "SOULCAP:SC000084", + "SOULCAP:SC000085", + "SOULCAP:SC000086", + "SOULCAP:SC000087", + "SOULCAP:SC000088", + "SOULCAP:SC000089", + "SOULCAP:SC000090", + "SOULCAP:SC000091", + "SOULCAP:SC000092", + "SOULCAP:SC000093", + "SOULCAP:SC000094", + "SOULCAP:SC000095", + "SOULCAP:SC000096", + "SOULCAP:SC000097", + "SOULCAP:SC000098", + "SOULCAP:SC000099", + "SOULCAP:SC000100", + "SOULCAP:SC000101", + "SOULCAP:SC000102", + "SOULCAP:SC000103", + "SOULCAP:SC000104", + "SOULCAP:SC000105", + "SOULCAP:SC000106", + "SOULCAP:SC000107", + "SOULCAP:SC000108", + "SOULCAP:SC000109", + "SOULCAP:SC000110", + "SOULCAP:SC000111", + "SOULCAP:SC000112", + "SOULCAP:SC000113", + "SOULCAP:SC000114", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000120", + "SOULCAP:SC000121", + "SOULCAP:SC000122", + "SOULCAP:SC000123", + "SOULCAP:SC000124", + "SOULCAP:SC000125", + "SOULCAP:SC000126", + "SOULCAP:SC000127" + ], + "records": [ + { + "marker_token": "CD66b", + "marker_synonyms": "", + "source_columns": "Ideal exclusion|Required exclusion|Required phenotypic markers", + "pro_id": "PR:000001332", + "pro_label": "cell adhesion molecule CEACAM8", + "uniprot_id": "P31997", + "uniprot_label": "cell adhesion molecule CEACAM8", + "gene_symbol": "CEACAM8", + "hgnc_id": "HGNC:1820", + "ncbi_gene_id": "", + "mapping_method": "cl_pro_tsv", + "confidence": "high", + "evidence": "reports/cl_pro_relationships.tsv", + "notes": "" + } + ], + "pro_ids": [ + "PR:000001332" + ], + "gene_symbols": [ + "CEACAM8" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "CD8", + "affected_subjects": [ + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000121" + ], + "records": [ + { + "marker_token": "CD8", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:000001084", + "pro_label": "T-cell surface glycoprotein CD8 alpha chain", + "uniprot_id": "P01732", + "uniprot_label": "T-cell surface glycoprotein CD8 alpha chain", + "gene_symbol": "CD8A", + "hgnc_id": "HGNC:1706", + "ncbi_gene_id": "", + "mapping_method": "cl_pro_tsv", + "confidence": "high", + "evidence": "reports/cl_pro_relationships.tsv", + "notes": "" + } + ], + "pro_ids": [ + "PR:000001084" + ], + "gene_symbols": [ + "CD8A" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "CXCR3", + "affected_subjects": [ + "SOULCAP:SC000115" + ], + "records": [ + { + "marker_token": "CXCR3", + "marker_synonyms": "CXCR3|CD183", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:000001207", + "pro_label": "C-X-C chemokine receptor type 3", + "uniprot_id": "P49682", + "uniprot_label": "C-X-C chemokine receptor type 3", + "gene_symbol": "CXCR3", + "hgnc_id": "HGNC:4540", + "ncbi_gene_id": "", + "mapping_method": "inferred", + "confidence": "high", + "evidence": "reports/cl_pro_relationships.tsv", + "notes": "" + } + ], + "pro_ids": [ + "PR:000001207" + ], + "gene_symbols": [ + "CXCR3" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "CXCR5", + "affected_subjects": [ + "SOULCAP:SC000115" + ], + "records": [ + { + "marker_token": "CXCR5", + "marker_synonyms": "CXCR5|CD185", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:000001209", + "pro_label": "C-X-C chemokine receptor type 5", + "uniprot_id": "P32302", + "uniprot_label": "C-X-C chemokine receptor type 5", + "gene_symbol": "CXCR5", + "hgnc_id": "HGNC:1060", + "ncbi_gene_id": "", + "mapping_method": "inferred", + "confidence": "high", + "evidence": "reports/cl_pro_relationships.tsv", + "notes": "" + } + ], + "pro_ids": [ + "PR:000001209" + ], + "gene_symbols": [ + "CXCR5" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "FceR1a", + "affected_subjects": [ + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000014", + "SOULCAP:SC000015" + ], + "records": [ + { + "marker_token": "FceR1a", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers|Required phenotypic markers", + "pro_id": "PR:000007431", + "pro_label": "high affinity immunoglobulin epsilon receptor subunit alpha", + "uniprot_id": "", + "uniprot_label": "high affinity immunoglobulin epsilon receptor subunit alpha", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "ols4", + "confidence": "high", + "evidence": "https://www.ebi.ac.uk/ols4/api/search?q=FCER1A&ontology=pr; https://nodenormalization-sri.renci.org/1.3/get_normalized_nodes?curie=PR:000007431", + "notes": "high-affinity IgE receptor alpha chain" + } + ], + "pro_ids": [ + "PR:000007431" + ], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_gene_mapping", + "status": "no_gene_mapping", + "status_reason": "PRO identifier recorded, but no gene symbol or documented representation exception; review is needed.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "HLA-DR", + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000015", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000059", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000074", + "SOULCAP:SC000075", + "SOULCAP:SC000076", + "SOULCAP:SC000077", + "SOULCAP:SC000078", + "SOULCAP:SC000079", + "SOULCAP:SC000080", + "SOULCAP:SC000081", + "SOULCAP:SC000082", + "SOULCAP:SC000083", + "SOULCAP:SC000084", + "SOULCAP:SC000085", + "SOULCAP:SC000086", + "SOULCAP:SC000087", + "SOULCAP:SC000088", + "SOULCAP:SC000089", + "SOULCAP:SC000090", + "SOULCAP:SC000091", + "SOULCAP:SC000092", + "SOULCAP:SC000093", + "SOULCAP:SC000094", + "SOULCAP:SC000095", + "SOULCAP:SC000096", + "SOULCAP:SC000097", + "SOULCAP:SC000098", + "SOULCAP:SC000099", + "SOULCAP:SC000100", + "SOULCAP:SC000101", + "SOULCAP:SC000102", + "SOULCAP:SC000103", + "SOULCAP:SC000104", + "SOULCAP:SC000105", + "SOULCAP:SC000106", + "SOULCAP:SC000107", + "SOULCAP:SC000108", + "SOULCAP:SC000109", + "SOULCAP:SC000110", + "SOULCAP:SC000111", + "SOULCAP:SC000112", + "SOULCAP:SC000113", + "SOULCAP:SC000114", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000120", + "SOULCAP:SC000121", + "SOULCAP:SC000122", + "SOULCAP:SC000123", + "SOULCAP:SC000124", + "SOULCAP:SC000125", + "SOULCAP:SC000126", + "SOULCAP:SC000127" + ], + "records": [ + { + "marker_token": "HLA-DR", + "marker_synonyms": "", + "source_columns": "Ideal exclusion|Ideal phenotypic markers|Required phenotypic markers", + "pro_id": "PR:000002015", + "pro_label": "MHC class II histocompatibility antigen alpha chain DRA", + "uniprot_id": "", + "uniprot_label": "MHC class II histocompatibility antigen alpha chain DRA", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "ols4", + "confidence": "high", + "evidence": "https://www.ebi.ac.uk/ols4/api/search?q=HLA-DRA&ontology=pr; https://nodenormalization-sri.renci.org/1.3/get_normalized_nodes?curie=PR:000002015", + "notes": "HLA-DR is a heterodimer of HLA-DRA + HLA-DRB1; mapped to HLA-DRA as primary chain" + } + ], + "pro_ids": [ + "PR:000002015" + ], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_gene_mapping", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "IFNg", + "affected_subjects": [ + "SOULCAP:SC000116" + ], + "records": [ + { + "marker_token": "IFNg", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers", + "pro_id": "PR:P01579", + "pro_label": "interferon gamma (human)", + "uniprot_id": "P01579", + "uniprot_label": "interferon gamma", + "gene_symbol": "IFNG", + "hgnc_id": "HGNC:5438", + "ncbi_gene_id": "", + "mapping_method": "monarch", + "confidence": "high", + "evidence": "https://rest.genenames.org/fetch/symbol/IFNG; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_P01579", + "notes": "intracellular marker" + } + ], + "pro_ids": [ + "PR:P01579" + ], + "gene_symbols": [ + "IFNG" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "IL-13", + "affected_subjects": [ + "SOULCAP:SC000112", + "SOULCAP:SC000116", + "SOULCAP:SC000117" + ], + "records": [ + { + "marker_token": "IL-13", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers", + "pro_id": "PR:P35225", + "pro_label": "interleukin-13 (human)", + "uniprot_id": "P35225", + "uniprot_label": "interleukin 13", + "gene_symbol": "IL13", + "hgnc_id": "HGNC:5973", + "ncbi_gene_id": "", + "mapping_method": "monarch", + "confidence": "high", + "evidence": "https://rest.genenames.org/fetch/symbol/IL13; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_P35225", + "notes": "intracellular marker" + } + ], + "pro_ids": [ + "PR:P35225" + ], + "gene_symbols": [ + "IL13" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "IL-17a", + "affected_subjects": [ + "SOULCAP:SC000114", + "SOULCAP:SC000119" + ], + "records": [ + { + "marker_token": "IL-17a", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers", + "pro_id": "PR:Q16552", + "pro_label": "interleukin-17A (human)", + "uniprot_id": "Q16552", + "uniprot_label": "interleukin 17A", + "gene_symbol": "IL17A", + "hgnc_id": "HGNC:5981", + "ncbi_gene_id": "", + "mapping_method": "monarch", + "confidence": "high", + "evidence": "https://rest.genenames.org/fetch/symbol/IL17A; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_Q16552", + "notes": "intracellular marker" + } + ], + "pro_ids": [ + "PR:Q16552" + ], + "gene_symbols": [ + "IL17A" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "IL-4", + "affected_subjects": [ + "SOULCAP:SC000112", + "SOULCAP:SC000116", + "SOULCAP:SC000117" + ], + "records": [ + { + "marker_token": "IL-4", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers", + "pro_id": "PR:P05112", + "pro_label": "interleukin-4 (human)", + "uniprot_id": "P05112", + "uniprot_label": "interleukin 4", + "gene_symbol": "IL4", + "hgnc_id": "HGNC:6014", + "ncbi_gene_id": "", + "mapping_method": "monarch", + "confidence": "high", + "evidence": "https://rest.genenames.org/fetch/symbol/IL4; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_P05112", + "notes": "intracellular marker" + } + ], + "pro_ids": [ + "PR:P05112" + ], + "gene_symbols": [ + "IL4" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "IL-5", + "affected_subjects": [ + "SOULCAP:SC000112", + "SOULCAP:SC000116", + "SOULCAP:SC000117" + ], + "records": [ + { + "marker_token": "IL-5", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers", + "pro_id": "PR:P05113", + "pro_label": "interleukin-5 (human)", + "uniprot_id": "P05113", + "uniprot_label": "interleukin 5", + "gene_symbol": "IL5", + "hgnc_id": "HGNC:6016", + "ncbi_gene_id": "", + "mapping_method": "monarch", + "confidence": "high", + "evidence": "https://rest.genenames.org/fetch/symbol/IL5; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_P05113", + "notes": "intracellular marker" + } + ], + "pro_ids": [ + "PR:P05113" + ], + "gene_symbols": [ + "IL5" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "IL-9", + "affected_subjects": [ + "SOULCAP:SC000113", + "SOULCAP:SC000118" + ], + "records": [ + { + "marker_token": "IL-9", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers", + "pro_id": "PR:P15248", + "pro_label": "interleukin-9 (human)", + "uniprot_id": "P15248", + "uniprot_label": "interleukin 9", + "gene_symbol": "IL9", + "hgnc_id": "HGNC:6029", + "ncbi_gene_id": "", + "mapping_method": "monarch", + "confidence": "high", + "evidence": "https://rest.genenames.org/fetch/symbol/IL9; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_P15248", + "notes": "intracellular marker" + } + ], + "pro_ids": [ + "PR:P15248" + ], + "gene_symbols": [ + "IL9" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "IgA", + "affected_subjects": [ + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044" + ], + "records": [ + { + "marker_token": "IgA", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "Immunoglobulin heavy-chain class A; encoded by IGHA1 and IGHA2 gene family. No single PR ID or UniProt accession covers all isotypes." + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "IgD", + "affected_subjects": [ + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044" + ], + "records": [ + { + "marker_token": "IgD", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "Immunoglobulin heavy-chain class D; encoded by IGHD. No single PR ID or UniProt accession." + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "IgE", + "affected_subjects": [ + "SOULCAP:SC000033", + "SOULCAP:SC000036", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044" + ], + "records": [ + { + "marker_token": "IgE", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "Immunoglobulin heavy-chain class E; encoded by IGHE. No single PR ID or UniProt accession." + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "IgG", + "affected_subjects": [ + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044" + ], + "records": [ + { + "marker_token": "IgG", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "Immunoglobulin heavy-chain class G; encoded by IGHG1/IGHG2/IGHG3/IGHG4 gene family. No single PR ID or UniProt accession covers all subclasses." + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "IgM", + "affected_subjects": [ + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044" + ], + "records": [ + { + "marker_token": "IgM", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "Immunoglobulin heavy-chain class M; encoded by IGHM. No single PR ID or UniProt accession." + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "MR1", + "affected_subjects": [], + "records": [ + { + "marker_token": "MR1", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:Q95460", + "pro_label": "major histocompatibility complex class I-related protein 1 (human)", + "uniprot_id": "Q95460", + "uniprot_label": "major histocompatibility complex, class I-related", + "gene_symbol": "MR1", + "hgnc_id": "HGNC:4975", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "high", + "evidence": "https://rest.genenames.org/fetch/symbol/MR1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_Q95460", + "notes": "MHC-related protein 1; also used as 'MR1 tetramer' reagent for MAIT cell detection" + } + ], + "pro_ids": [ + "PR:Q95460" + ], + "gene_symbols": [ + "MR1" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCR", + "affected_subjects": [ + "SOULCAP:SC000122", + "SOULCAP:SC000123" + ], + "records": [ + { + "marker_token": "TCR", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers|Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "", + "notes": "pan-TCR marker; not specific to a single gene" + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRVa24", + "affected_subjects": [], + "records": [ + { + "marker_token": "TCRVa24", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0A0B4J240", + "pro_label": "T cell receptor alpha variable 10 (human)", + "uniprot_id": "A0A0B4J240", + "uniprot_label": "T cell receptor alpha variable 10 (human)", + "gene_symbol": "TRAV10", + "hgnc_id": "HGNC:12103", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRAV10; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J240", + "notes": "IMGT nomenclature: TRAV10" + } + ], + "pro_ids": [ + "PR:A0A0B4J240" + ], + "gene_symbols": [ + "TRAV10" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRVa24-Ja18", + "affected_subjects": [], + "records": [ + { + "marker_token": "TCRVa24-Ja18", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0A0B4J240", + "pro_label": "T cell receptor alpha variable 10 (human)", + "uniprot_id": "A0A0B4J240", + "uniprot_label": "T cell receptor alpha variable 10 (human)", + "gene_symbol": "TRAV10", + "hgnc_id": "HGNC:12103", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRAV10; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J240", + "notes": "Invariant iNKT TCR chain; two-gene marker TRAV10+TRAJ18; gene_symbol populated with TRAV10 as primary TRAV gene" + } + ], + "pro_ids": [ + "PR:A0A0B4J240" + ], + "gene_symbols": [ + "TRAV10" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRVa7.2", + "affected_subjects": [], + "records": [ + { + "marker_token": "TCRVa7.2", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0A0B4J238", + "pro_label": "T cell receptor alpha variable 1-2 (human)", + "uniprot_id": "A0A0B4J238", + "uniprot_label": "T cell receptor alpha variable 1-2 (human)", + "gene_symbol": "TRAV1-2", + "hgnc_id": "HGNC:12102", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRAV1-2; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J238", + "notes": "IMGT nomenclature: TRAV1-2" + } + ], + "pro_ids": [ + "PR:A0A0B4J238" + ], + "gene_symbols": [ + "TRAV1-2" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRVb11", + "affected_subjects": [], + "records": [ + { + "marker_token": "TCRVb11", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0A075B6N4", + "pro_label": "T cell receptor beta variable 25-1 (human)", + "uniprot_id": "A0A075B6N4", + "uniprot_label": "T cell receptor beta variable 25-1 (human)", + "gene_symbol": "TRBV25-1", + "hgnc_id": "HGNC:12205", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRBV25-1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A075B6N4", + "notes": "IMGT nomenclature: TRBV25-1" + } + ], + "pro_ids": [ + "PR:A0A075B6N4" + ], + "gene_symbols": [ + "TRBV25-1" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRVd2", + "affected_subjects": [ + "SOULCAP:SC000122" + ], + "records": [ + { + "marker_token": "TCRVd2", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0JD36", + "pro_label": "T cell receptor delta variable 2 (human)", + "uniprot_id": "A0JD36", + "uniprot_label": "T cell receptor delta variable 2 (human)", + "gene_symbol": "TRDV2", + "hgnc_id": "HGNC:12263", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRDV2; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0JD36", + "notes": "IMGT nomenclature: TRDV2" + } + ], + "pro_ids": [ + "PR:A0JD36" + ], + "gene_symbols": [ + "TRDV2" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRVg9", + "affected_subjects": [ + "SOULCAP:SC000122" + ], + "records": [ + { + "marker_token": "TCRVg9", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:Q99603", + "pro_label": "T cell receptor gamma variable 9 (human)", + "uniprot_id": "Q99603", + "uniprot_label": "T cell receptor gamma variable 9 (human)", + "gene_symbol": "TRGV9", + "hgnc_id": "HGNC:12295", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRGV9; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_Q99603", + "notes": "IMGT nomenclature: TRGV9" + } + ], + "pro_ids": [ + "PR:Q99603" + ], + "gene_symbols": [ + "TRGV9" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRab", + "affected_subjects": [ + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000122" + ], + "records": [ + { + "marker_token": "TCRab", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "", + "notes": "pan-αβ TCR marker; recognises assembled αβ heterodimer" + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRgd", + "affected_subjects": [ + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000122" + ], + "records": [ + { + "marker_token": "TCRgd", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "", + "notes": "pan-γδ TCR marker; recognises assembled γδ heterodimer" + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRva24", + "affected_subjects": [], + "records": [ + { + "marker_token": "TCRva24", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0A0B4J240", + "pro_label": "T cell receptor alpha variable 10 (human)", + "uniprot_id": "A0A0B4J240", + "uniprot_label": "T cell receptor alpha variable 10 (human)", + "gene_symbol": "TRAV10", + "hgnc_id": "HGNC:12103", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRAV10; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J240", + "notes": "Likely duplicate of TCRVa24 (different capitalisation) — data quality issue; mapped identically to TCRVa24 / TRAV10" + } + ], + "pro_ids": [ + "PR:A0A0B4J240" + ], + "gene_symbols": [ + "TRAV10" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "Tetramer", + "affected_subjects": [], + "records": [ + { + "marker_token": "Tetramer", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "generic reagent term; not a specific protein" + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_nonprotein_or_reagent", + "status_reason": "Registry notes document a non-protein gate or reagent; a single gene/PRO mapping may not apply.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "V", + "affected_subjects": [ + "SOULCAP:SC000122", + "SOULCAP:SC000123" + ], + "records": [ + { + "marker_token": "V", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers|Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "likely parsing artifact from multi-word TCR gene name — data quality issue; see reports/marker_validation.md" + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "source_artifact_needs_review", + "status_reason": "Registry notes describe a possible parsing artifact; source clarification is needed.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "VB11", + "affected_subjects": [], + "records": [ + { + "marker_token": "VB11", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0A075B6N4", + "pro_label": "T cell receptor beta variable 25-1 (human)", + "uniprot_id": "A0A075B6N4", + "uniprot_label": "T cell receptor beta variable 25-1 (human)", + "gene_symbol": "TRBV25-1", + "hgnc_id": "HGNC:12205", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRBV25-1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A075B6N4", + "notes": "Duplicate of TCRVb11 (uppercase) — data quality issue; same mapping as TCRVb11 / TRBV25-1" + } + ], + "pro_ids": [ + "PR:A0A075B6N4" + ], + "gene_symbols": [ + "TRBV25-1" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "Vb11", + "affected_subjects": [], + "records": [ + { + "marker_token": "Vb11", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0A075B6N4", + "pro_label": "T cell receptor beta variable 25-1 (human)", + "uniprot_id": "A0A075B6N4", + "uniprot_label": "T cell receptor beta variable 25-1 (human)", + "gene_symbol": "TRBV25-1", + "hgnc_id": "HGNC:12205", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRBV25-1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A075B6N4", + "notes": "Duplicate of TCRVb11 — data quality issue; same mapping as TCRVb11 / TRBV25-1" + } + ], + "pro_ids": [ + "PR:A0A075B6N4" + ], + "gene_symbols": [ + "TRBV25-1" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "Vd1", + "affected_subjects": [], + "records": [ + { + "marker_token": "Vd1", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0A1B0GX56", + "pro_label": "T cell receptor delta variable 1 (human)", + "uniprot_id": "A0A1B0GX56", + "uniprot_label": "T cell receptor delta variable 1 (human)", + "gene_symbol": "TRDV1", + "hgnc_id": "HGNC:12262", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRDV1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A1B0GX56", + "notes": "IMGT nomenclature: TRDV1" + } + ], + "pro_ids": [ + "PR:A0A1B0GX56" + ], + "gene_symbols": [ + "TRDV1" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "delta", + "affected_subjects": [], + "records": [ + { + "marker_token": "delta", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers|Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "likely parsing artifact from multi-word TCR gene name — data quality issue; see reports/marker_validation.md" + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "source_artifact_needs_review", + "status_reason": "Registry notes describe a possible parsing artifact; source clarification is needed.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "delta1", + "affected_subjects": [ + "SOULCAP:SC000122", + "SOULCAP:SC000123" + ], + "records": [ + { + "marker_token": "delta1", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "likely parsing artifact from multi-word TCR gene name — data quality issue; see reports/marker_validation.md" + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "source_artifact_needs_review", + "status_reason": "Registry notes describe a possible parsing artifact; source clarification is needed.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "gamma", + "affected_subjects": [], + "records": [ + { + "marker_token": "gamma", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers|Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "likely parsing artifact from multi-word TCR gene name — data quality issue; see reports/marker_validation.md" + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "source_artifact_needs_review", + "status_reason": "Registry notes describe a possible parsing artifact; source clarification is needed.", + "classification_basis": "Local registry identifiers and notes; not externally verified." + } + ], + "gaps": [ + { + "soulcap_abbreviation": "NK", + "soulcap_full_name": "Natural Killer Cell", + "gap_type": "cl_axiom_gap", + "description": "CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the field-standard defining positive marker CD56 is absent from its own axioms, though present on its child terms.", + "related_cl_ids": "CL:0000623", + "evidence": "reports/cl_pro_relationships.md; reports/literature/nk_cell_markers.md; reports/cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-22", + "association": "exact_abbreviation", + "subject_ids": [ + "SOULCAP:SC000001" + ], + "candidate_subject_ids": [ + "SOULCAP:SC000001" + ], + "evidence_links": [ + { + "label": "reports/cl_pro_relationships.md", + "href": "cl_pro_relationships.md" + }, + { + "label": "reports/literature/nk_cell_markers.md", + "href": "literature/nk_cell_markers.md" + }, + { + "label": "reports/cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623", + "href": "cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623" + } + ] + }, + { + "soulcap_abbreviation": "NK1 / NK3", + "soulcap_full_name": "Natural Killer Cell 1 / Natural Killer Cell 3", + "gap_type": "cl_axiom_gap", + "description": "CL:0000939 (CD16-positive, CD56-dim NK cell, human) does not distinguish CD57-negative (NK1) from CD57-positive (NK3) substates; both SOULCAP rows currently map to the same CL term at Broad match type.", + "related_cl_ids": "CL:0000939", + "evidence": "reports/candidate_cl_mappings_narrative.md#ctnk--nk1--nk3--cytotoxic-natural-killer-cell-cd16-positive", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-22", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#ctnk--nk1--nk3--cytotoxic-natural-killer-cell-cd16-positive", + "href": "candidate_cl_mappings_narrative.md#ctnk--nk1--nk3--cytotoxic-natural-killer-cell-cd16-positive" + } + ] + }, + { + "soulcap_abbreviation": "ILC1", + "soulcap_full_name": "Innate Lymphoid Cell 1", + "gap_type": "cl_axiom_gap", + "description": "No human-specific \"group 1 innate lymphoid cell\" CL term exists, unlike group 2 (CL:0001081) and group 3 (CL:0001078); confirmed by direct OLS4 search returning zero hits for the human-qualified query.", + "related_cl_ids": "CL:0001067", + "evidence": "reports/cl_term_issues.md#missing-human-specific-group-1-innate-lymphoid-cell-term", + "status": "filed_as_issue", + "repo_issue": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14", + "date_logged": "2026-07-23", + "association": "exact_abbreviation", + "subject_ids": [ + "SOULCAP:SC000008" + ], + "candidate_subject_ids": [ + "SOULCAP:SC000008" + ], + "evidence_links": [ + { + "label": "reports/cl_term_issues.md#missing-human-specific-group-1-innate-lymphoid-cell-term", + "href": "cl_term_issues.md#missing-human-specific-group-1-innate-lymphoid-cell-term" + }, + { + "label": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14", + "href": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14" + } + ] + }, + { + "soulcap_abbreviation": "Transitional", + "soulcap_full_name": "Transitional B cell", + "gap_type": "no_reasonable_cl_match", + "description": "SOULCAP row has all four marker columns (Required/Ideal exclusion, Required/Ideal phenotypic markers) completely empty in the master sheet — there is no marker definition to match against at all, so no CL candidate can be derived from markers. Distinct from the more specific \"T3\" (Transitional B cell 3) row, which does have marker data.", + "related_cl_ids": "(none)", + "evidence": "reports/candidate_cl_mappings_batch.tsv (note column); data/marker_combinations.csv", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "exact_abbreviation", + "subject_ids": [ + "SOULCAP:SC000027" + ], + "candidate_subject_ids": [ + "SOULCAP:SC000027" + ], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_batch.tsv", + "href": "candidate_cl_mappings_batch.tsv" + }, + { + "label": "data/marker_combinations.csv", + "href": "../data/marker_combinations.csv" + } + ] + }, + { + "soulcap_abbreviation": "CTNK", + "soulcap_full_name": "Cytotoxic Natural Killer Cell", + "gap_type": "sheet_data_issue", + "description": "Sheet's Full Name reads \"Cytotoxice Natural Killer Cell\" (typo, extra trailing \"e\"); this broke batch lexical search entirely for the row (zero OLS4 hits). Marker-based match was unaffected. Cannot be fixed in this repo — requires a correction in the Google Sheet master.", + "related_cl_ids": "CL:0000939", + "evidence": "reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-22", + "association": "exact_abbreviation", + "subject_ids": [ + "SOULCAP:SC000003" + ], + "candidate_subject_ids": [ + "SOULCAP:SC000003" + ], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells", + "href": "candidate_cl_mappings_narrative.md#dc-family--dendritic-cells" + } + ] + }, + { + "soulcap_abbreviation": "pDC", + "soulcap_full_name": "Peripheral Dendritic Cell (as written)", + "gap_type": "sheet_data_issue", + "description": "Sheet's Full Name reads \"Peripheral Dendritic Cell,\" but the row's markers (CD123hi, CD303+, low CD33) are the textbook definition of plasmacytoid dendritic cells — likely a wrong word, should probably read \"Plasmacytoid.\" This broke batch lexical search (returned an unrelated \"migratory dendritic cell\" hit). Cannot be fixed in this repo — requires a correction in the Google Sheet master.", + "related_cl_ids": "CL:0001058", + "evidence": "reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-22", + "association": "exact_abbreviation", + "subject_ids": [ + "SOULCAP:SC000014" + ], + "candidate_subject_ids": [ + "SOULCAP:SC000014" + ], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells", + "href": "candidate_cl_mappings_narrative.md#dc-family--dendritic-cells" + } + ] + }, + { + "soulcap_abbreviation": "Mono", + "soulcap_full_name": "Monocyte", + "gap_type": "cl_axiom_gap", + "description": "CL:0000576 (plain \"monocyte\") has zero marker axiom rows in cl_pro_relationships.tsv — same parent-class axiom-gap pattern as NK/ILC/cDC/B cell. Match is lexical-only (OAK-verified), not marker-confirmed.", + "related_cl_ids": "CL:0000576", + "evidence": "reports/candidate_cl_mappings_narrative.md#monocyte-family; reports/cl_pro_relationships.tsv", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "exact_abbreviation", + "subject_ids": [ + "SOULCAP:SC000017" + ], + "candidate_subject_ids": [ + "SOULCAP:SC000017" + ], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#monocyte-family", + "href": "candidate_cl_mappings_narrative.md#monocyte-family" + }, + { + "label": "reports/cl_pro_relationships.tsv", + "href": "cl_pro_relationships.tsv" + } + ] + }, + { + "soulcap_abbreviation": "CMo / NCMo / IntMo", + "soulcap_full_name": "Classical / Non-classical / Intermediate Monocyte", + "gap_type": "cl_axiom_gap", + "description": "CL:0000860/CL:0000875/CL:0002393 assert only CCR2 (CD192) and CX3CR1 status plus lineage negatives — none assert the CD14/CD16 axioms that actually define these three subsets per Ziegler-Heitbrock et al. 2010 (PMID:20628149). Already covered by repo issue #12 (filed upstream as CL#3665) — not a new gap, cited here for context on why these rows can only be matched lexically.", + "related_cl_ids": "CL:0000860; CL:0000875; CL:0002393", + "evidence": "reports/candidate_cl_mappings_narrative.md#monocyte-family; https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12", + "status": "filed_as_issue", + "repo_issue": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12", + "date_logged": "2026-07-24", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#monocyte-family", + "href": "candidate_cl_mappings_narrative.md#monocyte-family" + }, + { + "label": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12", + "href": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12" + }, + { + "label": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12", + "href": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12" + } + ] + }, + { + "soulcap_abbreviation": "Mono / CMo / NCMo / IntMo", + "soulcap_full_name": "Monocyte family", + "gap_type": "sheet_data_issue", + "description": "Required exclusion column reads \"CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)\" for all four rows — the second group is missing a \"]\" after CD123hi (likely should read \"([CD123hi]-|CD193-)\", matching the cDC/pDC pattern). Cannot be fixed in this repo — requires a correction in the Google Sheet master.", + "related_cl_ids": "(none)", + "evidence": "reports/candidate_cl_mappings_narrative.md#monocyte-family; data/marker_combinations.csv", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#monocyte-family", + "href": "candidate_cl_mappings_narrative.md#monocyte-family" + }, + { + "label": "data/marker_combinations.csv", + "href": "../data/marker_combinations.csv" + } + ] + }, + { + "soulcap_abbreviation": "B cell", + "soulcap_full_name": "B cell", + "gap_type": "cl_axiom_gap", + "description": "CL:0000236 (plain \"B cell\") has zero marker axiom rows in cl_pro_relationships.tsv — same parent-class axiom-gap pattern as NK/ILC/cDC/monocyte. Match is lexical-only (OAK-verified after OLS4 REST search returned zero hits for this exact query), not marker-confirmed.", + "related_cl_ids": "CL:0000236", + "evidence": "reports/candidate_cl_mappings_narrative.md#b-cell-parent; reports/cl_pro_relationships.tsv", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "exact_abbreviation", + "subject_ids": [ + "SOULCAP:SC000023" + ], + "candidate_subject_ids": [ + "SOULCAP:SC000023" + ], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#b-cell-parent", + "href": "candidate_cl_mappings_narrative.md#b-cell-parent" + }, + { + "label": "reports/cl_pro_relationships.tsv", + "href": "cl_pro_relationships.tsv" + } + ] + }, + { + "soulcap_abbreviation": "BDN1 / BDN2 / BDN3 / BDN4", + "soulcap_full_name": "Double Negative B cell 1-4", + "gap_type": "cl_axiom_gap", + "description": "SOULCAP defines four \"double negative\" B cell subsets (DN1-4, the atypical/age-associated B cell scheme from the autoimmunity/aging literature) via CD21/CD11c/CD185/IgE combinations. CL has only the general parent CL:0000981 \"double negative memory B cell\" with no DN1-4 subtyping; direct searches for \"DN1 B cell\" through \"DN4 B cell\" and \"atypical memory B cell\" returned zero CL hits. All four SOULCAP rows currently collapse to the same Broad match.", + "related_cl_ids": "CL:0000981", + "evidence": "reports/candidate_cl_mappings_narrative.md#b-cell-maturation-tree--transitional--mature--naive--double-negative", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#b-cell-maturation-tree--transitional--mature--naive--double-negative", + "href": "candidate_cl_mappings_narrative.md#b-cell-maturation-tree--transitional--mature--naive--double-negative" + } + ] + }, + { + "soulcap_abbreviation": "IgD only", + "soulcap_full_name": "IgD only Memory B cell", + "gap_type": "cl_axiom_gap", + "description": "SOULCAP distinguishes IgD+IgM- (\"IgD only\") from IgD+IgM+ (\"Unswitched\") memory B cells as two separate populations. No CL term exists for the IgD+IgM- subset — direct searches for \"IgD-positive memory B cell\" and \"IgD only memory B cell\" returned zero hits; the only IgD-related term found, CL:0001053 \"IgD-negative memory B cell,\" is the opposite polarity. Left unmapped rather than forced onto a wrong-polarity term.", + "related_cl_ids": "CL:0001053 (wrong polarity, not used)", + "evidence": "reports/candidate_cl_mappings_narrative.md#memory-b-cell-tree", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "exact_abbreviation", + "subject_ids": [ + "SOULCAP:SC000038" + ], + "candidate_subject_ids": [ + "SOULCAP:SC000038" + ], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#memory-b-cell-tree", + "href": "candidate_cl_mappings_narrative.md#memory-b-cell-tree" + } + ] + }, + { + "soulcap_abbreviation": "CD4+ T cell / CD8+ T cell / CD4+/CD8+ T cell / CD4-/CD8- T cell / CD4+/CD8+ TCRab T cell / CD4-/CD8- TCRab T cell / CD4+ TCRgd T cell / CD8+ TCRgd T cell / CD4+/CD8+ TCRgd", + "soulcap_full_name": "various", + "gap_type": "cl_axiom_gap", + "description": "CL organizes CD4/CD8 status primarily under the alpha-beta T cell lineage: no combined alpha-beta+gamma-delta CD4/CD8 terms exist, no clean double-positive alpha-beta term exists, and the only double-negative term found (CL:0002489) is a thymocyte-stage term (wrong tissue for a blood/PBMC panel). All 9 rows Broad-matched to the nearest alpha-beta or gamma-delta parent with this gap noted.", + "related_cl_ids": "CL:0000624; CL:0000625; CL:0000789; CL:0000084; CL:0000798", + "evidence": "reports/candidate_cl_mappings_narrative.md#combined-lineage-b-and-double-positivedouble-negative-gaps", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#combined-lineage-b-and-double-positivedouble-negative-gaps", + "href": "candidate_cl_mappings_narrative.md#combined-lineage-b-and-double-positivedouble-negative-gaps" + } + ] + }, + { + "soulcap_abbreviation": "CD56+ T cell family (13 rows)", + "soulcap_full_name": "various CD56+ T cell subsets", + "gap_type": "cl_axiom_gap", + "description": "SOULCAP crosses CD56 positivity with CD4/CD8/DP/DN status and TCRab/TCRgd lineage (13 variants); CL has only one term at this level (CL:4052055, pending rename to \"CD56-positive T cell, human\" per issue #13) with no further subdivision. All 13 rows Broad-match to CL:4052055.", + "related_cl_ids": "CL:4052055", + "evidence": "reports/candidate_cl_mappings_narrative.md#cd56-t-cell-family; https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#cd56-t-cell-family", + "href": "candidate_cl_mappings_narrative.md#cd56-t-cell-family" + }, + { + "label": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13", + "href": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13" + } + ] + }, + { + "soulcap_abbreviation": "Tcm / Tem / Temra (general, no CD4/CD8 split) and all TCRgd-specific Tnaive/Tcm/Tem/Temra rows", + "soulcap_full_name": "various", + "gap_type": "cl_axiom_gap", + "description": "CL has no generic central/effector memory T cell term spanning both CD4 and CD8 (only CD4-specific and CD8-specific versions exist), and no gamma-delta-specific differentiation-state terms at all. ~13 rows Broad-matched to the nearest available parent (CL:0000084 T cell, or CL:0000798 gamma-delta T cell) with this gap noted.", + "related_cl_ids": "CL:0000084; CL:0000798", + "evidence": "reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree", + "href": "candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree" + } + ] + }, + { + "soulcap_abbreviation": "CD8+ Temra / CD8+ TCRab Temra", + "soulcap_full_name": "CD8+ CD45RA+ effector memory T cell", + "gap_type": "cl_axiom_gap", + "description": "CL:4030002 (effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated) appears to be CD4-specific only; no CD8+ counterpart with the same \"terminally differentiated\" qualifier was found — only the non-TEMRA-specific CL:0000913 (effector memory CD8-positive, alpha-beta T cell). Possible asymmetry in CL's own hierarchy; needs a second look before concluding it's a genuine omission rather than differently-named.", + "related_cl_ids": "CL:4030002; CL:0000913", + "evidence": "reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree", + "href": "candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree" + } + ] + }, + { + "soulcap_abbreviation": "(26 rows, various abbreviations)", + "soulcap_full_name": "(no Full Name in sheet)", + "gap_type": "sheet_data_issue", + "description": "26 rows in the T cell branch have a completely empty Full Name field, so no name-based match can be attempted (Conv TCRab family, T helper, T cytotoxic, Tfh, CD4 PanT helper/Treg, ConT Treg-like/Tfh-like, Th1/2/9/17-like, Vg9/Vd1/Vd2/Vd3 subsets). Additionally, Th1-like/Th2-like/Th9-like/Th17-like each appear TWICE in the sheet: one copy (parented under \"CD4 ConT\") has iNKT-style TCRVa24-Ja18/CD1d-a-GalCer markers that look copy-pasted from an unrelated row; the other (no parent) has the correct Th-subset chemokine receptor panel (CD183/CD185/CD194/CD196). Likely a genuine sheet data bug, not two intentional variants. Cannot be fixed here — requires correction in the Google Sheet master.", + "related_cl_ids": "CL:0000912 (T helper, once named); CL:0000910 (T cytotoxic, once named)", + "evidence": "reports/candidate_cl_mappings_narrative.md#rows-with-no-full-name-in-the-sheet--not-mapped", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#rows-with-no-full-name-in-the-sheet--not-mapped", + "href": "candidate_cl_mappings_narrative.md#rows-with-no-full-name-in-the-sheet--not-mapped" + } + ] + } + ], + "findings": [ + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000017", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000018", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000019", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000020", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000059", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000074", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000075", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000076", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000077", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000078", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000079", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000107", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000109", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000110", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000111", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000112", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000113", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000114", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000123", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000124", + "message": "2 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000125", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000126", + "message": "2 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000127", + "message": "2 marker cell(s) cannot be scored." + }, + { + "severity": "warning", + "code": "uncertain_proposal", + "subject": "SOULCAP:SC000006", + "message": "Proposal for CL:0001074 is explicitly uncertain." + }, + { + "severity": "warning", + "code": "uncertain_proposal", + "subject": "SOULCAP:SC000064", + "message": "Proposal for CL:0000789 is explicitly uncertain." + }, + { + "severity": "warning", + "code": "uncertain_proposal", + "subject": "SOULCAP:SC000065", + "message": "Proposal for CL:0000084 is explicitly uncertain." + }, + { + "severity": "warning", + "code": "uncertain_proposal", + "subject": "SOULCAP:SC000068", + "message": "Proposal for CL:0000789 is explicitly uncertain." + }, + { + "severity": "warning", + "code": "uncertain_proposal", + "subject": "SOULCAP:SC000069", + "message": "Proposal for CL:0000789 is explicitly uncertain." + }, + { + "severity": "warning", + "code": "uncertain_proposal", + "subject": "SOULCAP:SC000070", + "message": "Proposal for CL:0000798 is explicitly uncertain." + }, + { + "severity": "warning", + "code": "uncertain_proposal", + "subject": "SOULCAP:SC000071", + "message": "Proposal for CL:0000798 is explicitly uncertain." + }, + { + "severity": "warning", + "code": "uncertain_proposal", + "subject": "SOULCAP:SC000072", + "message": "Proposal for CL:0000798 is explicitly uncertain." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000001", + "message": "CL:0000623: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000002", + "message": "CL:0000938: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000003", + "message": "CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000004", + "message": "CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000005", + "message": "CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000006", + "message": "CL:0001074: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000007", + "message": "CL:0001065: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000008", + "message": "CL:0001067: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000009", + "message": "CL:0001081: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000010", + "message": "CL:0001078: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000011", + "message": "CL:0000990: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000012", + "message": "CL:0002394: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000013", + "message": "CL:0002399: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000014", + "message": "CL:0001058: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000015", + "message": "CL:0000043: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000016", + "message": "CL:0000043: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000017", + "message": "CL:0000576: structured fields empty: literature_evidence. 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Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000022", + "message": "CL:0000771: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000023", + "message": "CL:0000236: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000024", + "message": "CL:0000946: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000025", + "message": "CL:0000980: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. 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Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000031", + "message": "CL:0000788: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000032", + "message": "CL:0000981: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000033", + "message": "CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000034", + "message": "CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000035", + "message": "CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000036", + "message": "CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000037", + "message": "CL:0000787: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000039", + "message": "CL:0000970: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000040", + "message": "CL:0000971: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000041", + "message": "CL:0000972: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000042", + "message": "CL:0000973: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000043", + "message": "CL:0000979: structured fields empty: literature_evidence, curator_evidence. 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no other eosinophil-specific CD191 evidence found via targeted EuropePMC search.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000771", + "cl_label": "eosinophil", + "pr_id": "PR:000001255", + "pr_label": "C-C chemokine receptor type 3", + "cd_synonym": "CD193 (exact)", + "species_support": "human", + "evidence_source": "europepmc_search", + "citation": "(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow", + "quote": "candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5Rα), HLA-DR, using 10 parameter flow cytometry", + "source_ref": "https://europepmc.org/article/MED/38666394", + "evidence_links": [ + { + "label": "https://europepmc.org/article/MED/38666394", + "href": "https://europepmc.org/article/MED/38666394" + } + ] + }, + { + "cl_id": "CL:0000771", + "cl_label": "eosinophil", + "pr_id": "PR:000001307", + "pr_label": "CD44 molecule", + "cd_synonym": "CD44 (label); CDw44 (exact)", + "species_support": "human", + "evidence_source": "europepmc_search", + "citation": "(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow", + "quote": "candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5Rα), HLA-DR, using 10 parameter flow cytometry", + "source_ref": "https://europepmc.org/article/MED/38666394", + "evidence_links": [ + { + "label": "https://europepmc.org/article/MED/38666394", + "href": "https://europepmc.org/article/MED/38666394" + } + ] + }, + { + "cl_id": "CL:0000771", + "cl_label": "eosinophil", + "pr_id": "PR:000001343", + "pr_label": "CD69 molecule", + "cd_synonym": "CD69 (label)", + "species_support": "human", + "evidence_source": "europepmc_search", + "citation": "(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow", + "quote": "candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5Rα), HLA-DR, using 10 parameter flow cytometry", + "source_ref": "https://europepmc.org/article/MED/38666394", + "evidence_links": [ + { + "label": "https://europepmc.org/article/MED/38666394", + "href": "https://europepmc.org/article/MED/38666394" + } + ] + }, + { + "cl_id": "CL:0000771", + "cl_label": "eosinophil", + "pr_id": "PR:000005178", + "pr_label": "CD9 molecule", + "cd_synonym": "CD9 (label)", + "species_support": "human", + "evidence_source": "europepmc_search", + "citation": "(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow", + "quote": "candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5Rα), HLA-DR, using 10 parameter flow cytometry", + "source_ref": "https://europepmc.org/article/MED/38666394", + "evidence_links": [ + { + "label": "https://europepmc.org/article/MED/38666394", + "href": "https://europepmc.org/article/MED/38666394" + } + ] + }, + { + "cl_id": "CL:0000775", + "cl_label": "neutrophil", + "pr_id": "PR:000001479", + "pr_label": "low affinity immunoglobulin gamma Fc region receptor II", + "cd_synonym": "CD32 (broad)", + "species_support": "human", + "evidence_source": "europepmc_search", + "citation": "Su K et al. 2007 (PMID:17312177; DOI:10.4049/jimmunol.178.5.3272) -- FcγRIIb (CD32B) expression profiling in human circulating leukocytes", + "quote": "we found that FcgammaRIIb is expressed on the cell surface of circulating B lymphocytes, monocytes, neutrophils, myeloid dendritic cells (DCs), and at very low levels on plasmacytoid DCs from some donors", + "source_ref": "https://europepmc.org/article/MED/17312177", + "evidence_links": [ + { + "label": "https://europepmc.org/article/MED/17312177", + "href": "https://europepmc.org/article/MED/17312177" + } + ] + }, + { + "cl_id": "CL:0000775", + "cl_label": "neutrophil", + "pr_id": "PR:000001879", + "pr_label": "leukosialin", + "cd_synonym": "CD43 (related)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "CD43 not found in any targeted EuropePMC search in a human-neutrophil-specific context ('CD43 leukosialin human neutrophil' returned unrelated papers).", + "evidence_links": [] + }, + { + "cl_id": "CL:0000786", + "cl_label": "plasma cell", + "pr_id": "PR:000001289", + "pr_label": "membrane-spanning 4-domains subfamily A member 1", + "cd_synonym": "CD20 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Griffin DO & Rothstein TL 2012 (PMID: 22654880; 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DOI: 10.3389/fimmu.2026.1739493; PMC: PMC12920462)", + "quote": "Purity of PHA- and Zole- expanded αβ and γδ T-cell cultures and MACS-isolated T-cell populations were assessed by flow cytometry using anti-CD3, CD4, CD8, γδ TCR, and αβ TCR monoclonal antibodies.", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000803", + "cl_label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell", + "pr_id": "PR:000001084", + "pr_label": "T-cell surface glycoprotein CD8 alpha chain", + "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Kelm M et al. 2026 (PMID: 41727470; DOI: 10.3389/fimmu.2026.1739493; PMC: PMC12920462)", + "quote": "Purity of PHA- and Zole- expanded αβ and γδ T-cell cultures and MACS-isolated T-cell populations were assessed by flow cytometry using anti-CD3, CD4, CD8, γδ TCR, and αβ TCR monoclonal antibodies.", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000814", + "cl_label": "mature NK T cell", + "pr_id": "PR:000001874", + "pr_label": "KLRB1-like protein", + "cd_synonym": "", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Lal KG et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357)", + "quote": "we defined iNKT cell subsets by the co-expression of TCR Vα24 and Vβ11 among CD3+ cells, and further through their expression of CD4 and CD161", + "source_ref": "reports/literature/inkt_markers.md", + "evidence_links": [ + { + "label": "reports/literature/inkt_markers.md", + "href": "literature/inkt_markers.md" + } + ] + }, + { + "cl_id": "CL:0000818", + "cl_label": "transitional stage B cell", + "pr_id": "PR:000001408", + "pr_label": "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1", + "cd_synonym": "CD38 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)", + "quote": "T1 (CD38+++CD24hiCD10++IgDlo/−), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000818", + "cl_label": "transitional stage B cell", + "pr_id": "PR:000001932", + "pr_label": "signal transducer CD24", + "cd_synonym": "CD24 (label); CD24A (related)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)", + "quote": "T1 (CD38+++CD24hiCD10++IgDlo/−), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000818", + "cl_label": "transitional stage B cell", + "pr_id": "PR:000001289", + "pr_label": "membrane-spanning 4-domains subfamily A member 1", + "cd_synonym": "CD20 (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "CD20 positivity on transitional B cells is not stated verbatim in reports/literature/b_cell_markers.md -- the report only confirms CD20 on 'mature B cells' generally (Griffin & Rothstein 2012), not the transitional stage specifically.", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000860", + "cl_label": "classical monocyte", + "pr_id": "PR:000001199", + "pr_label": "C-C chemokine receptor type 2", + "cd_synonym": "CD192 (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000860", + "cl_label": "classical monocyte", + "pr_id": "PR:000001002", + "pr_label": "CD19 molecule", + "cd_synonym": "CD19 (label)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000860", + "cl_label": "classical monocyte", + "pr_id": "PR:000001020", + "pr_label": "CD3 epsilon", + "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000860", + "cl_label": "classical monocyte", + "pr_id": "PR:000001289", + "pr_label": "membrane-spanning 4-domains subfamily A member 1", + "cd_synonym": "CD20 (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000875", + "cl_label": "non-classical monocyte", + "pr_id": "PR:000001206", + "pr_label": "CX3C chemokine receptor 1", + "cd_synonym": "", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000875", + "cl_label": "non-classical monocyte", + "pr_id": "PR:000001002", + "pr_label": "CD19 molecule", + "cd_synonym": "CD19 (label)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000875", + "cl_label": "non-classical monocyte", + "pr_id": "PR:000001020", + "pr_label": "CD3 epsilon", + "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000875", + "cl_label": "non-classical monocyte", + "pr_id": "PR:000001289", + "pr_label": "membrane-spanning 4-domains subfamily A member 1", + "cd_synonym": "CD20 (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000895", + "cl_label": "naive thymus-derived CD4-positive, alpha-beta T cell", + "pr_id": "PR:000001380", + "pr_label": "interleukin-2 receptor subunit alpha", + "cd_synonym": "CD25 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg", + "quote": "In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000898", + "cl_label": "naive T cell", + "pr_id": "PR:000001318", + "pr_label": "L-selectin", + "cd_synonym": "CD62 (exact); CD62L (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Kamigaichi A et al. 2026 (PMID: 42047825; DOI: 10.1007/s00262-026-04357-4; PMC: PMC13125411) -- confirms CD62L used on human CD4+ T cells, though in a Th1 (not naive-T) context", + "quote": "Th1 (CXCR3+CCR4−CCR6− CD62LlowCD4+ T cells)", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000898", + "cl_label": "naive T cell", + "pr_id": "PR:000001307", + "pr_label": "CD44 molecule", + "cd_synonym": "CD44 (label); CDw44 (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "CD44 not mentioned anywhere in reports/literature/t_cell_markers.md; not found via a targeted EuropePMC search either ('CD44 human naive T cell surface marker' returned unrelated tissue-resident-memory/B-cell papers).", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000898", + "cl_label": "naive T cell", + "pr_id": "PR:000001015", + "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA", + "cd_synonym": "CD45RA (label)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", + "quote": "CD3+/CD8−/CD4+/CCR7+/CD45RA+", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000898", + "cl_label": "naive T cell", + "pr_id": "PR:000001203", + "pr_label": "C-C chemokine receptor type 7", + "cd_synonym": "CD197 (exact); CDw197 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", + "quote": "CD3+/CD8−/CD4+/CCR7+/CD45RA+", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000898", + "cl_label": "naive T cell", + "pr_id": "PR:000001869", + "pr_label": "interleukin-7 receptor subunit alpha", + "cd_synonym": "CD127 (exact); CDw127 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg", + "quote": "In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000900", + "cl_label": "naive thymus-derived CD8-positive, alpha-beta T cell", + "pr_id": "PR:000001380", + "pr_label": "interleukin-2 receptor subunit alpha", + "cd_synonym": "CD25 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg", + "quote": "In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000904", + "cl_label": "central memory CD4-positive, alpha-beta T cell", + "pr_id": "PR:000001015", + "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA", + "cd_synonym": "CD45RA (label)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", + "quote": "CD3+/CD8−/CD4+/CCR7+/CD45RA−", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000904", + "cl_label": "central memory CD4-positive, alpha-beta T cell", + "pr_id": "PR:000001203", + "pr_label": "C-C chemokine receptor type 7", + "cd_synonym": "CD197 (exact); CDw197 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", + "quote": "CD3+/CD8−/CD4+/CCR7+/CD45RA−", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000905", + "cl_label": "effector memory CD4-positive, alpha-beta T cell", + "pr_id": "PR:000001015", + "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA", + "cd_synonym": "CD45RA (label)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", + "quote": "CD3+/CD8−/CD4+/CCR7−/CD45RA+", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000905", + "cl_label": "effector memory CD4-positive, alpha-beta T cell", + "pr_id": "PR:000001203", + "pr_label": "C-C chemokine receptor type 7", + "cd_synonym": "CD197 (exact); CDw197 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", + "quote": "CD3+/CD8−/CD4+/CCR7−/CD45RA+", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000907", + "cl_label": "central memory CD8-positive, alpha-beta T cell", + "pr_id": "PR:000001015", + "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA", + "cd_synonym": "CD45RA (label)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Central Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design", + "quote": "CD3+/CD8+/CD4−/CCR7+/CD45RA+", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000907", + "cl_label": "central memory CD8-positive, alpha-beta T cell", + "pr_id": "PR:000001203", + "pr_label": "C-C chemokine receptor type 7", + "cd_synonym": "CD197 (exact); CDw197 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Central Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design", + "quote": "CD3+/CD8+/CD4−/CCR7+/CD45RA+", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000913", + "cl_label": "effector memory CD8-positive, alpha-beta T cell", + "pr_id": "PR:000001015", + "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA", + "cd_synonym": "CD45RA (label)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Effector Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design", + "quote": "CD3+/CD8+/CD4−/CCR7+/CD45RA+", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000913", + "cl_label": "effector memory CD8-positive, alpha-beta T cell", + "pr_id": "PR:000001203", + "pr_label": "C-C chemokine receptor type 7", + "cd_synonym": "CD197 (exact); CDw197 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Effector Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design", + "quote": "CD3+/CD8+/CD4−/CCR7+/CD45RA+", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000938", + "cl_label": "CD16-negative, CD56-bright natural killer cell, human", + "pr_id": "PR:000001024", + "pr_label": "neural cell adhesion molecule 1", + "cd_synonym": "CD56 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0)", + "quote": "human NK cells are typically divided into two main categories on the basis of the density of CD56, the 140-kDa isoform of the neural cell adhesion molecule (NCAM)2, on the cell surface: CD56bright and CD56dim NK cells.", + "source_ref": "reports/literature/nk_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/nk_cell_markers.md", + "href": "literature/nk_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000938", + "cl_label": "CD16-negative, CD56-bright natural killer cell, human", + "pr_id": "PR:000001483", + "pr_label": "low affinity immunoglobulin gamma Fc region receptor III", + "cd_synonym": "CD16 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360)", + "quote": "CD56bright human NK cells express high levels of CD62L (l-selectin) and CD94 but absent or low levels of CD16 and KIRs", + "source_ref": "reports/literature/nk_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/nk_cell_markers.md", + "href": "literature/nk_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000938", + "cl_label": "CD16-negative, CD56-bright natural killer cell, human", + "pr_id": "PR:000002015", + "pr_label": "MHC class II histocompatibility antigen alpha chain DRA", + "cd_synonym": "", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0) -- indirect: HLA-D family expression shown on an adaptive NK subset (NK3B), not stated specifically for CD56bright/CD56dim", + "quote": "Notably, NK3B (cluster 1) was distinguished by expression of members of the HLA-D gene family, CD74, CCL5, CD7 and KLRC1, and NK3A exhibited enhanced cytotoxic capabilities (through expression of GZMA, GZMB and PRF1)", + "source_ref": "reports/literature/nk_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/nk_cell_markers.md", + "href": "literature/nk_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000938", + "cl_label": "CD16-negative, CD56-bright natural killer cell, human", + "pr_id": "PR:000001319", + "pr_label": "SLAM family member 5", + "cd_synonym": "CD84 (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No CD84-on-NK-cell evidence found in reports/literature/nk_cell_markers.md or a targeted EuropePMC search ('CD84 human natural killer cell surface marker' -- top hits were CD84 in MDSCs/breast cancer/CLL, none NK-specific).", + "evidence_links": [ + { + "label": "reports/literature/nk_cell_markers.md", + "href": "literature/nk_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000939", + "cl_label": "CD16-positive, CD56-dim natural killer cell, human", + "pr_id": "PR:000001024", + "pr_label": "neural cell adhesion molecule 1", + "cd_synonym": "CD56 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0)", + "quote": "human NK cells are typically divided into two main categories on the basis of the density of CD56, the 140-kDa isoform of the neural cell adhesion molecule (NCAM)2, on the cell surface: CD56bright and CD56dim NK cells.", + "source_ref": "reports/literature/nk_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/nk_cell_markers.md", + "href": "literature/nk_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000939", + "cl_label": "CD16-positive, CD56-dim natural killer cell, human", + "pr_id": "PR:000002015", + "pr_label": "MHC class II histocompatibility antigen alpha chain DRA", + "cd_synonym": "", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0) -- indirect: HLA-D family expression shown on an adaptive NK subset (NK3B), not stated specifically for CD56bright/CD56dim", + "quote": "Notably, NK3B (cluster 1) was distinguished by expression of members of the HLA-D gene family, CD74, CCL5, CD7 and KLRC1, and NK3A exhibited enhanced cytotoxic capabilities (through expression of GZMA, GZMB and PRF1)", + "source_ref": "reports/literature/nk_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/nk_cell_markers.md", + "href": "literature/nk_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000939", + "cl_label": "CD16-positive, CD56-dim natural killer cell, human", + "pr_id": "PR:000001483", + "pr_label": "low affinity immunoglobulin gamma Fc region receptor III", + "cd_synonym": "CD16 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360)", + "quote": "In contrast, CD56dim NK cells are CD16hi and express more KIRs but less CD94 and CD62L; they predominate in PB", + "source_ref": "reports/literature/nk_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/nk_cell_markers.md", + "href": "literature/nk_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000960", + "cl_label": "T3 B cell", + "pr_id": "PR:000001318", + "pr_label": "L-selectin", + "cd_synonym": "CD62 (exact); CD62L (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "CD62L not mentioned in the T3-transitional context in reports/literature/b_cell_markers.md (only mentioned for DN2 B cells: 'lack of CXCR5 and CD62L expression', Sachinidis 2021, a different B cell subset).", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000960", + "cl_label": "T3 B cell", + "pr_id": "PR:000001338", + "pr_label": "complement receptor type 2", + "cd_synonym": "CD21 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)", + "quote": "The gradual loss of CD10, CD5, and IgM and the upregulation of CD22, CD44, CD21, and CD23 as cells progress from immature to transitional (TI to T2 to T3) to mature naïve cells", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000960", + "cl_label": "T3 B cell", + "pr_id": "PR:000001880", + "pr_label": "low affinity immunoglobulin epsilon Fc receptor", + "cd_synonym": "CD23 (exact); CD23A (related)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)", + "quote": "The gradual loss of CD10, CD5, and IgM and the upregulation of CD22, CD44, CD21, and CD23 as cells progress from immature to transitional (TI to T2 to T3) to mature naïve cells", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000970", + "cl_label": "unswitched memory B cell", + "pr_id": "PR:000001963", + "pr_label": "CD27 molecule", + "cd_synonym": "CD27 (label); CD27L (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)", + "quote": "\"**M**: CD19+ CD27+ CD38−/lo\" [memory B cell gating entry]", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000972", + "cl_label": "class switched memory B cell", + "pr_id": "PR:000001963", + "pr_label": "CD27 molecule", + "cd_synonym": "CD27 (label); CD27L (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)", + "quote": "\"**M**: CD19+ CD27+ CD38−/lo\" [memory B cell gating entry]", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000980", + "cl_label": "plasmablast", + "pr_id": "PR:000001408", + "pr_label": "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1", + "cd_synonym": "CD38 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)", + "quote": "\"**ASC**: CD19+ CD27+ CD38hi\" and \"**M**: CD19+ CD27+ CD38−/lo\" and", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000980", + "cl_label": "plasmablast", + "pr_id": "PR:000001963", + "pr_label": "CD27 molecule", + "cd_synonym": "CD27 (label); CD27L (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)", + "quote": "\"**ASC**: CD19+ CD27+ CD38hi\" and \"**M**: CD19+ CD27+ CD38−/lo\" and", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000980", + "cl_label": "plasmablast", + "pr_id": "PR:000001289", + "pr_label": "membrane-spanning 4-domains subfamily A member 1", + "cd_synonym": "CD20 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)", + "quote": "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000980", + "cl_label": "plasmablast", + "pr_id": "PR:000001935", + "pr_label": "syndecan-1", + "cd_synonym": "CD138 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)", + "quote": "\"**CD138neg ASC**: CD138−\" and \"**CD138pos ASC**: CD138+\" [gating labels distinguishing", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000981", + "cl_label": "double negative memory B cell", + "pr_id": "PR:000001963", + "pr_label": "CD27 molecule", + "cd_synonym": "CD27 (label); CD27L (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Sachinidis A & Garyfallos A 2021 (PMID: 34964023; DOI: 10.31138/mjr.32.3.192)", + "quote": "Double negative (DN) B cells, also known as atypical memory B cells, constitute a B cell population that lacks expression of immunoglobulin D and CD27 memory marker.", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000990", + "cl_label": "conventional dendritic cell", + "pr_id": "PR:000001013", + "pr_label": "integrin alpha-X", + "cd_synonym": "CD11 (exact); CD11C (related); CD11c (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)", + "quote": "Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123−", + "source_ref": "reports/literature/dc_markers.md", + "evidence_links": [ + { + "label": "reports/literature/dc_markers.md", + "href": "literature/dc_markers.md" + } + ] + }, + { + "cl_id": "CL:0001058", + "cl_label": "plasmacytoid dendritic cell, human", + "pr_id": "PR:000001013", + "pr_label": "integrin alpha-X", + "cd_synonym": "CD11 (exact); CD11C (related); CD11c (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)", + "quote": "Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123−", + "source_ref": "reports/literature/dc_markers.md", + "evidence_links": [ + { + "label": "reports/literature/dc_markers.md", + "href": "literature/dc_markers.md" + } + ] + }, + { + "cl_id": "CL:0001058", + "cl_label": "plasmacytoid dendritic cell, human", + "pr_id": "PR:000001889", + "pr_label": "CD14 molecule", + "cd_synonym": "CD14 (label)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)", + "quote": "DCs were defined as live, LIN(CD3, CD19, CD56)−CD14−HLA-DR+ cells.", + "source_ref": "reports/literature/dc_markers.md", + "evidence_links": [ + { + "label": "reports/literature/dc_markers.md", + "href": "literature/dc_markers.md" + } + ] + }, + { + "cl_id": "CL:0001058", + "cl_label": "plasmacytoid dendritic cell, human", + "pr_id": "PR:000001865", + "pr_label": "interleukin-3 receptor class 2 alpha chain", + "cd_synonym": "CD123 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)", + "quote": "pDCs are CD11c− CD123+ cells best characterized for their type I interferon", + "source_ref": "reports/literature/dc_markers.md", + "evidence_links": [ + { + "label": "reports/literature/dc_markers.md", + "href": "literature/dc_markers.md" + } + ] + }, + { + "cl_id": "CL:0001065", + "cl_label": "innate lymphoid cell", + "pr_id": "PR:000001002", + "pr_label": "CD19 molecule", + "cd_synonym": "CD19 (label)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Krabbendam L et al. 2021 (PMID:33300130; DOI:10.1002/eji.202048696)", + "quote": "Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) FcRεR1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors).", + "source_ref": "reports/literature/ilc_markers.md", + "evidence_links": [ + { + "label": "reports/literature/ilc_markers.md", + "href": "literature/ilc_markers.md" + } + ] + }, + { + "cl_id": "CL:0001065", + "cl_label": "innate lymphoid cell", + "pr_id": "PR:000001020", + "pr_label": "CD3 epsilon", + "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Krabbendam L et al. 2021 (PMID:33300130; DOI:10.1002/eji.202048696)", + "quote": "We gated for lymphocytes, excluded doublets and dead cells and selected CD45+CD3− cells", + "source_ref": "reports/literature/ilc_markers.md", + "evidence_links": [ + { + "label": "reports/literature/ilc_markers.md", + "href": "literature/ilc_markers.md" + } + ] + }, + { + "cl_id": "CL:0002393", + "cl_label": "intermediate monocyte", + "pr_id": "PR:000001002", + "pr_label": "CD19 molecule", + "cd_synonym": "CD19 (label)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0002393", + "cl_label": "intermediate monocyte", + "pr_id": "PR:000001020", + "pr_label": "CD3 epsilon", + "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0002393", + "cl_label": "intermediate monocyte", + "pr_id": "PR:000001199", + "pr_label": "C-C chemokine receptor type 2", + "cd_synonym": "CD192 (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0002393", + "cl_label": "intermediate monocyte", + "pr_id": "PR:000001289", + "pr_label": "membrane-spanning 4-domains subfamily A member 1", + "cd_synonym": "CD20 (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0002394", + "cl_label": "CD141-positive myeloid dendritic cell", + "pr_id": "PR:000002105", + "pr_label": "thrombomodulin", + "cd_synonym": "CD141 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)", + "quote": "DC1 corresponds to the cross-presenting CD141/BDCA-3+ cDC1, which is best marked by CLEC9A", + "source_ref": "reports/literature/dc_markers.md", + "evidence_links": [ + { + "label": "reports/literature/dc_markers.md", + "href": "literature/dc_markers.md" + } + ] + }, + { + "cl_id": "CL:0002399", + "cl_label": "CD1c-positive myeloid dendritic cell", + "pr_id": "PR:000002027", + "pr_label": "T-cell surface glycoprotein CD1c", + "cd_synonym": "CD1C (exact); CD1c (label)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)", + "quote": "DC2 and DC3 correspond to new subdivisions of the CD1C/BDCA-1+ cDC2", + "source_ref": "reports/literature/dc_markers.md", + "evidence_links": [ + { + "label": "reports/literature/dc_markers.md", + "href": "literature/dc_markers.md" + } + ] + } + ], + "limitations": [ + "All mappings remain proposals; marker compatibility does not establish equivalence.", + "Marker usage is extracted only from valid cells. Invalid cells can hide additional marker usage.", + "Empty structured evidence fields do not mean that literature does not exist; consult the narrative.", + "CL reverse view covers proposed targets, not the entire Cell Ontology.", + "No upstream services were queried. Snapshot age is not proof that an ontology is outdated." + ], + "evaluation": { + "schema_version": 1, + "generated_utc": "2026-09-11T04:13:49.655515+00:00", + "inputs": { + "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44", + "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8", + "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e", + "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c", + "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706", + "marker_policy": "317578b4b7fb1a9837b9a61fa85c2dc1ea6469eab4404b0435476ba4a12a1f84", + "marker_map": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7" + }, + "benchmark_path": "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\matcher_benchmark.tsv", + "matcher": { + "version": "0.1.0", + "source_hashes": { + 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"marker_resolution": true, + "resolution_policy": "explicit_v1", + "local_lexical": false, + "lexical_limit": 20, + "lexical_min_jaccard": 0.5 + }, + "candidate_count": 826, + "marker_resolution_issues": [ + { + "marker": "CD15", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD16", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD1D-A-GALCER", + "reason": "policy_withheld", + "representation": "reagent_gate", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein." + }, + { + "marker": "CD3", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD57", + "reason": "policy_withheld", + "representation": "reagent_gate", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein." + }, + { + "marker": "CD8", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "HLA-DR", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "IGA", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGD", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGE", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGG", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGM", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "MR1", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "TCR", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "TCRVA24-JA18", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "TCRAB", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "TCRGD", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "TETRAMER", + "reason": "policy_withheld", + "representation": "reagent_gate", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein." + }, + { + "marker": "V", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + }, + { + "marker": "DELTA", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + }, + { + "marker": "DELTA1", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + }, + { + "marker": "GAMMA", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires 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"tokens": [ + "CD20" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001889", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD14", + "tokens": [ + "CD14" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001889", + "tokens": [ + "CD14" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001024", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001381", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD122", + "tokens": [ + "CD122" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001874", + "asserted": "True", + "paths": [] + }, + { + "sense": "positive", + "pr": "PR:000002065", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD117", + "tokens": [ + "CD117" + ] 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"hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [ + { + "sense": "negative", + "pr": "PR:000001002", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001003", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD34", + "tokens": [ + "CD34" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001003", + "tokens": [ + "CD34" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:P28906", + "asserted": 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"change": "regressed", + "before_rank": 9, + "after_rank": 10, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000022/Exact", + "change": "unchanged", + "before_rank": 4, + "after_rank": 4, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000023/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000024/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000025/Exact", + "change": "unchanged", + "before_rank": 3, + "after_rank": 3, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000026/Exact", + "change": "improved", + "before_rank": 31, + "after_rank": 6, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000028/Broad", + "change": "unchanged", + "before_rank": 1, + "after_rank": 1, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000029/Exact", + "change": "regressed", + "before_rank": 43, + "after_rank": 48, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000030/Exact", + "change": "unchanged", + "before_rank": 20, + "after_rank": 20, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000031/Exact", + "change": "unchanged", + "before_rank": 5, + "after_rank": 5, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000032/Exact", + "change": "unchanged", + "before_rank": 5, + "after_rank": 5, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000033/Broad", + "change": "unchanged", + "before_rank": 12, + "after_rank": 12, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000034/Broad", + "change": "unchanged", + "before_rank": 4, + "after_rank": 4, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000035/Broad", + "change": "unchanged", + "before_rank": 5, + "after_rank": 5, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000036/Broad", + "change": "unchanged", + "before_rank": 12, + "after_rank": 12, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000037/Exact", + "change": "unchanged", + "before_rank": 39, + "after_rank": 39, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000039/Exact", + "change": "unchanged", + "before_rank": 13, + "after_rank": 13, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000040/Exact", + "change": "unchanged", + "before_rank": 33, + "after_rank": 33, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000041/Exact", + "change": "unchanged", + "before_rank": 14, + "after_rank": 14, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000042/Exact", + "change": "unchanged", + "before_rank": 18, + "after_rank": 18, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000043/Exact", + "change": "unchanged", + "before_rank": 18, + "after_rank": 18, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000044/Exact", + "change": "unchanged", + "before_rank": 17, + "after_rank": 17, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000045/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000046/Broad", + "change": "regressed", + "before_rank": 34, + "after_rank": 87, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000047/Broad", + "change": "regressed", + "before_rank": 42, + "after_rank": 127, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000048/Broad", + "change": "regressed", + "before_rank": 63, + "after_rank": 119, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000049/Broad", + "change": "regressed", + "before_rank": 34, + "after_rank": 87, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000050/Broad", + "change": "regressed", + "before_rank": 70, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000051/Broad", + "change": "regressed", + "before_rank": 63, + "after_rank": 114, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000052/Broad", + "change": "regressed", + "before_rank": 42, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000053/Broad", + "change": "regressed", + "before_rank": 54, + "after_rank": 115, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000054/Broad", + "change": "regressed", + "before_rank": 34, + "after_rank": 87, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000055/Broad", + "change": "regressed", + "before_rank": 70, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000056/Broad", + "change": "regressed", + "before_rank": 63, + "after_rank": 114, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000057/Broad", + "change": "regressed", + "before_rank": 42, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000058/Broad", + "change": "regressed", + "before_rank": 54, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000059/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000060/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000061/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000062/Broad", + "change": "regressed", + "before_rank": 9, + "after_rank": 70, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000063/Broad", + "change": "regressed", + "before_rank": 4, + "after_rank": 125, + "before_status": "hit_at_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000064/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000065/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000066/Exact", + "change": "regressed", + "before_rank": 9, + "after_rank": 69, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000067/Exact", + "change": "regressed", + "before_rank": 4, + "after_rank": 124, + "before_status": "hit_at_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000068/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000069/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000070/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000071/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000072/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000073/Exact", + "change": "regressed", + "before_rank": 1, + "after_rank": 117, + "before_status": "hit_at_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000074/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000082/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000085/Exact", + "change": "regressed", + "before_rank": 239, + "after_rank": 247, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000087/Exact", + "change": "improved", + "before_rank": 252, + "after_rank": 249, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000089/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000092/Exact", + "change": "improved", + "before_rank": 253, + "after_rank": 250, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000096/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000099/Exact", + "change": "regressed", + "before_rank": 239, + "after_rank": 247, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000103/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + } + ] + }, + "status": "current_local_snapshot", + "differences": [] + } +} diff --git a/reports/audit_summary.md b/reports/audit_summary.md new file mode 100644 index 0000000..86f2e95 --- /dev/null +++ b/reports/audit_summary.md @@ -0,0 +1,159 @@ +# SOULCAP mapping audit + +Generated: 2026-09-11T04:13:51.094265+00:00 +Mapping evidence resolution: legacy + +[Open dashboard](audit_dashboard.html) · [Audit data](audit_data.json) + +- registered entities: 127 +- source rows: 127 +- mapping records: 80 +- source entities with proposals: 80 +- source entities without proposals: 47 +- unresolved source rows: 0 +- uncertain proposals: 8 +- invalid marker cells: 26 +- invalid profile rows: 23 +- evidence statuses: {"partial_support": 54, "invalid_profile": 6, "no_marker_support": 20} +- review statuses: {"needs_review": 80} +- marker statuses: {"mapped": 55, "no_gene_mapping": 3, "documented_nonprotein_or_reagent": 3, "documented_complex_or_family": 10, "source_artifact_needs_review": 4} +- gap records: 17 +- finding severities: {"error": 23, "warning": 8, "info": 81} + +## Provenance + +```json +{ + "export_inputs": "match", + "differences": [], + "upstream_checked": false, + "agreement": "historical_without_ids", + "ontology_snapshot_date": "2026-06-29", + "ontology_age_days": 74, + "export_decisions": "match", + "export_evidence": "match" +} +``` + +## Review queue + +- error / invalid_profile / SOULCAP:SC000017: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000018: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000019: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000020: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000059: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000074: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000075: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000076: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000077: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000078: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000079: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000107: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000109: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000110: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000111: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000112: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000113: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000114: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000123: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000124: 2 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000125: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000126: 2 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000127: 2 marker cell(s) cannot be scored. +- warning / uncertain_proposal / SOULCAP:SC000006: Proposal for CL:0001074 is explicitly uncertain. +- warning / uncertain_proposal / SOULCAP:SC000064: Proposal for CL:0000789 is explicitly uncertain. +- warning / uncertain_proposal / SOULCAP:SC000065: Proposal for CL:0000084 is explicitly uncertain. +- warning / uncertain_proposal / SOULCAP:SC000068: Proposal for CL:0000789 is explicitly uncertain. +- warning / uncertain_proposal / SOULCAP:SC000069: Proposal for CL:0000789 is explicitly uncertain. +- warning / uncertain_proposal / SOULCAP:SC000070: Proposal for CL:0000798 is explicitly uncertain. +- warning / uncertain_proposal / SOULCAP:SC000071: Proposal for CL:0000798 is explicitly uncertain. +- warning / uncertain_proposal / SOULCAP:SC000072: Proposal for CL:0000798 is explicitly uncertain. +- info / evidence_not_recorded / SOULCAP:SC000001: CL:0000623: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000002: CL:0000938: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000003: CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000004: CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000005: CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000006: CL:0001074: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000007: CL:0001065: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000008: CL:0001067: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000009: CL:0001081: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000010: CL:0001078: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000011: CL:0000990: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000012: CL:0002394: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000013: CL:0002399: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000014: CL:0001058: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000015: CL:0000043: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000016: CL:0000043: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000017: CL:0000576: structured fields empty: literature_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000018: CL:0000860: structured fields empty: literature_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000019: CL:0000875: structured fields empty: literature_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000020: CL:0002393: structured fields empty: literature_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000021: CL:0000775: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000022: CL:0000771: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000023: CL:0000236: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000024: CL:0000946: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000025: CL:0000980: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000026: CL:0000786: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000028: CL:0000818: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000029: CL:0000785: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000030: CL:0000960: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000031: CL:0000788: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000032: CL:0000981: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000033: CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000034: CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000035: CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000036: CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000037: CL:0000787: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000039: CL:0000970: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000040: CL:0000971: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000041: CL:0000972: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000042: CL:0000973: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000043: CL:0000979: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000044: CL:0000948: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000045: CL:0000084: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000046: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000047: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000048: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000049: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000050: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000051: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000052: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000053: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000054: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000055: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000056: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000057: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000058: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000059: CL:0000814: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000060: CL:0000789: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000061: CL:0000798: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000062: CL:0000624: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000063: CL:0000625: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000064: CL:0000789: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000065: CL:0000084: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000066: CL:0000624: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000067: CL:0000625: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000068: CL:0000789: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000069: CL:0000789: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000070: CL:0000798: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000071: CL:0000798: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000072: CL:0000798: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000073: CL:0000803: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000074: CL:0000940: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000082: CL:0000904: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000085: CL:0000907: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000087: CL:0000898: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000089: CL:0000895: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000092: CL:0000900: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000096: CL:0000905: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000099: CL:0000913: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000103: CL:4030002: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / historical_agreement / Agreement report: Not joined to current rows: this cached report has no verified input provenance. + +## Interpretation + +- All mappings remain proposals; marker compatibility does not establish equivalence. +- Marker usage is extracted only from valid cells. Invalid cells can hide additional marker usage. +- Empty structured evidence fields do not mean that literature does not exist; consult the narrative. +- CL reverse view covers proposed targets, not the entire Cell Ontology. +- No upstream services were queried. Snapshot age is not proof that an ontology is outdated. diff --git a/reports/candidate_cl_mappings.md b/reports/candidate_cl_mappings.md index b9ef7c4..0b1fe36 100644 --- a/reports/candidate_cl_mappings.md +++ b/reports/candidate_cl_mappings.md @@ -1,608 +1,1568 @@ -# Candidate CL Mappings - -Milestone 4 deliverable: proposed SOULCAP → Cell Ontology (CL) mappings, each -with a rationale and supporting evidence from the Milestone 1 marker→gene -table and Milestone 2 literature reports. See [ROADMAP.md](../ROADMAP.md) for -the milestone definition. - -Note: Milestone 3 (audit of the *existing* curated mappings) is blocked on the -Google Sheet gaining broad/exact-match and comment columns, so entries below -are proposed directly from marker + literature evidence rather than from a -formal audit pass. - -Candidates were shortlisted with `uv run soulcap-match` (scores CL terms in -[reports/cl_pro_relationships.tsv](cl_pro_relationships.tsv) against a -SOULCAP marker profile) and reviewed by hand — the tool ranks candidates but -does not pick the mapping automatically. Any CL gap surfaced along the way is -also logged in [cl_term_issues.md](cl_term_issues.md). - ---- - -## NK — Natural Killer Cell - -**SOULCAP definition** ([data/marker_combinations.csv](../data/marker_combinations.csv)): -`(CD14-|CD33-|CD64-) CD34- CD3- CD19-` exclusion; `live/ CD45+ CD56+/hi CD127-` -required phenotypic markers. Currently unmapped (`OLS CL identifier` empty). - -| Field | Value | -|---|---| -| Proposed CL term | natural killer cell | -| Proposed CL ID | `CL:0000623` | -| Match type | Exact | -| `soulcap-match` rank | 33 / 826 (score 13) — low despite being the correct match; see rationale | - -**Rationale:** SOULCAP's plain "NK" row has no subtype-discriminating markers -(no CD16, no CD57), so it corresponds to the general parent concept rather -than a bright/dim/decidual subtype. `CL:0000623` matches on all four -negative-exclusion markers (CD14-, CD3-, CD19-; CD20 is not part of the -SOULCAP profile). Its low `soulcap-match` score is *not* evidence against the -mapping — it reflects a real CL gap (see below), not a poor match. - -**Evidence:** -- Marker → gene: CD56 → `PR:000001024` → UniProt `P13591` → gene `NCAM1` - (`HGNC:7656`) — [marker_mappings/marker_protein_gene.csv](../marker_mappings/marker_protein_gene.csv) -- Literature: "Natural killer cells are prototypic members of the innate - lymphoid cell (ILC) family and characterized in humans by expression of the - phenotypic marker CD56 in the absence of CD3." — Van Acker HH et al. 2017 - (PMID:28791027) — [reports/literature/nk_cell_markers.md](literature/nk_cell_markers.md) - -**CL gap flagged:** `CL:0000623` asserts no positive marker axiom at all -(only CD14-/CD19-/CD3-/CD20- negatives), even though CD56 positivity is the -field-standard defining marker and CL already asserts it on this term's own -children (`CL:0000938`, `CL:0000939`). Logged in -[cl_term_issues.md](cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623) — -not yet filed as a repo issue. - ---- - -## NK2 — Natural Killer Cell 2 (CD56-bright) - -**SOULCAP definition:** as NK, plus required `CD56hi CD16-/lo CD57-`. - -| Field | Value | -|---|---| -| Proposed CL term | CD16-negative, CD56-bright natural killer cell, human | -| Proposed CL ID | `CL:0000938` | -| Match type | Exact | -| `soulcap-match` rank | 1 / 826 | - -**Rationale:** CL directly asserts CD56 (high) and matches on the shared -negative-exclusion markers; the CD16-negative axiom aligns with SOULCAP's -`CD16-/lo` requirement. Clean top-ranked match, no conflicts. - -**Evidence:** Marker→gene as above (CD56 → NCAM1); CD16 → FCGR3A (see -[marker_mappings/marker_protein_gene.csv](../marker_mappings/marker_protein_gene.csv)). -Literature distinguishing CD56bright/CD56dim NK subsets: -[reports/literature/nk_cell_markers.md](literature/nk_cell_markers.md). - ---- - -## CTNK / NK1 / NK3 — Cytotoxic Natural Killer Cell (CD16-positive) - -**SOULCAP definition:** as NK, plus required `CD16+` (NK1/NK3 additionally -split on `CD57-`/`CD57+`). - -| Field | Value | -|---|---| -| Proposed CL term | CD16-positive, CD56-dim natural killer cell, human | -| Proposed CL ID | `CL:0000939` | -| Match type | Exact (CTNK, broad parent of NK1/NK3) | -| `soulcap-match` rank | 1 / 826 | - -**Rationale:** CL asserts CD16 positive and CD56 low/dim; the SOULCAP CD16+ -requirement matches directly, and CD56+/hi is compatible with CL's "dim" -(present, lower level) rather than contradicting it. Confirmed only after -fixing a `soulcap-match` scoring bug that had conflated CL's "low/dim" sense -with "negative" — see commit history on -[src/soulcap_cl_mapping/cl_match.py](../src/soulcap_cl_mapping/cl_match.py). - -**Note:** CL:0000939 does not itself distinguish CD57- (NK1) from CD57+ -(NK3) — neither SOULCAP's NK1 nor NK3 has a more specific CL match available -yet based on current `cl_pro_relationships` data. Flagged for follow-up, not -yet logged as a formal CL gap. - -**Evidence:** Marker→gene as above; literature on CD16+CD56dim cytotoxic NK -subset: [reports/literature/nk_cell_markers.md](literature/nk_cell_markers.md). - ---- - -## ILCp — Innate Lymphoid Cell Progenitor - -**SOULCAP definition:** required `live/ CD45+ CD3- CD127+ CD56+ CD117+ -CD294-`. No exclusion columns populated; CD34 status is not tested. - -| Field | Value | -|---|---| -| Proposed CL term | CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human | -| Proposed CL ID | `CL:0001074` | -| Match type | Broad — **tentative, unconfirmed** | - -**Rationale:** Chosen on name match ("precursor" = SOULCAP's "Progenitor") -plus agreement on CD56+/CD117+. **Uncertainty:** SOULCAP's ILCp profile does -not test CD34 at all, so it cannot confirm or rule out `CL:0001074`'s -CD34-**positive** requirement — two other CL candidates are equally -marker-consistent and were not ruled out: -- `CL:0001073` CD34-**negative**, CD56+, CD117+ innate lymphoid cell, human — differs from CL:0001074 only in CD34 sign. -- `CL:0001082` immature innate lymphoid cell — generic "immature" label, no CD34 assertion either way. - -This should be treated as a **draft pick, not a confirmed mapping**, until -either the sheet gains a CD34 column value for this row or literature -resolves which CD34 state defines the SOULCAP-intended progenitor stage. - ---- - -## ILC family — Innate Lymphoid Cells - -**SOULCAP definitions:** ILC (parent, `CD3- CD127+`), ILC1 -(`CD56- CD117- CD294-`), ILC2 (`CD56- CD117lo/- CD294+`), ILC3 -(`CD56+/- CD117+ CD294-`), all sharing the same lineage-exclusion columns. - -| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source | -|---|---|---|---|---| -| ILC | innate lymphoid cell | `CL:0001065` | Exact | Lexical — marker-based scoring returned an unrelated dendritic cell term | -| ILC1 | group 1 innate lymphoid cell | `CL:0001067` | Exact | Lexical, OLS4-verified | -| ILC2 | group 2 innate lymphoid cell, **human** | `CL:0001081` | Exact | OLS4-verified directly — batch lexical search had picked the **mouse** term (`CL:0002089`) | -| ILC3 | group 3 innate lymphoid cell, **human** | `CL:0001078` | Exact | OLS4-verified directly — batch lexical search had over-specified to an NKp44-positive subtype (`CL:0001079`) SOULCAP's profile doesn't test | - -**Rationale:** For all four rows, marker-axiom scoring failed outright -(top candidates were unrelated dendritic-cell terms — `cl_pro_relationships.tsv` -has effectively no useful axioms for this lineage). The plain-name matches are -textbook-standard ILC group nomenclature and were confirmed by direct OLS4 -lookup rather than trusted from the raw batch lexical output, since that -output was independently wrong for both ILC2 (species) and ILC3 -(over-specific subtype) in ways a naive "top lexical hit" read would have -missed. - -**CL gap flagged — ILC1:** Unlike ILC2 and ILC3, **no human-specific "group 1 -innate lymphoid cell" term exists in CL** — only the species-generic -`CL:0001067`. This is an asymmetry in CL's own authoring (two of three ILC -groups have a human-specific term, one doesn't). Logged in -[cl_term_issues.md](cl_term_issues.md) and being filed as a repo issue (see -Open follow-ups). - ---- - -## DC family — Dendritic Cells - -**SOULCAP definitions:** cDC (parent, `CD11chi HLA-DR+`), cDC1 -(`CD1c- CD141+`), cDC2 (`CD1c+ CD141lo/-`), pDC (`CD123hi CD303+`, low CD33). - -| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source | -|---|---|---|---|---| -| cDC | conventional dendritic cell | `CL:0000990` | Exact | Lexical | -| cDC1 | CD141-positive myeloid dendritic cell | `CL:0002394` | Exact | OLS4-verified directly — batch lexical search had wrongly assigned cDC1 the *same* term as cDC2 | -| cDC2 | CD1c-positive myeloid dendritic cell | `CL:0002399` | Exact | Lexical, confirmed correct by cross-check against cDC1 | -| pDC | plasmacytoid dendritic cell, human | `CL:0001058` | Exact | OLS4-verified directly — see sheet naming issue below | - -**Rationale (cDC1/cDC2):** SOULCAP defines cDC1 as CD1c-**negative**, -CD141-**positive** (classic BDCA3⁺ cDC1) and cDC2 as CD1c-**positive**, -CD141-low/negative (classic BDCA1⁺ cDC2). The raw batch lexical search -returned `CL:0002399` (CD1c-positive) as the top hit for **both** cDC1 and -cDC2 queries — a false agreement caused by the free-text search not -discriminating "1" vs "2" in the query well. Direct OLS4 search for -"CD141-positive myeloid dendritic cell" resolved cDC1 correctly to -`CL:0002394`. - -**Sheet naming issue — pDC:** the sheet's Full Name for `pDC` is "**Peripheral** -Dendritic Cell," but its required markers (`CD123hi`, `CD303+`, low CD33) are -the textbook definition of *plasmacytoid* dendritic cells, not a generic -"peripheral" category. This typo/wrong word is what broke the batch lexical -search for this row (it searched "Peripheral Dendritic Cell" and found an -unrelated "migratory dendritic cell" hit). Likely should read "Plasmacytoid -Dendritic Cell" — **flagging for sheet correction, not changed here** (the -sheet is the source of truth and this repo cannot edit it directly; see -[README.md](../README.md#input-data)). - -**Sheet naming issue — CTNK:** the sheet's Full Name for `CTNK` is -"**Cytotoxice** Natural Killer Cell" (extra trailing "e"). Likely should read -"Cytotoxic Natural Killer Cell." This typo broke the batch lexical search for -that row entirely (zero OLS4 hits) — the marker-based match (`CL:0000939`, -above) was unaffected since it doesn't depend on the name. **Flagging for -sheet correction, not changed here**, same reasoning as pDC above. - ---- - -## Basophil - -**SOULCAP definition:** two sheet rows share the abbreviation `Basophil` (a -PBMC prep and a WB prep), with slightly different required/ideal columns but -the same intent: `live/ CD45+ (CD33+|CD123+) (CD193+|FceR1a+|HLA-DR-|CD303-)`, -excluding CD3- (and CD15-/CD66b- in the WB version's required columns). - -| Field | Value | -|---|---| -| Proposed CL term | mature basophil | -| Proposed CL ID | `CL:0000043` | -| Match type | Exact | - -**Rationale:** Originally, **neither** marker-axiom scoring nor the batch -lexical search found this match — both were checked and both missed it. It -was found by hand-inspecting [cl_pro_relationships.md](cl_pro_relationships.md) -directly: `CL:0000043` asserts CD193(high)/FceR1a(high)/CD123(high) positive -and CD19-/CD3-/CD8- negative — closely matching SOULCAP's required OR-group -and CD3- exclusion. `soulcap-match` now finds it too (see below). - -**Tooling limitation found and fixed:** SOULCAP's marker syntax uses -OR-groups like `(CD193+|FceR1a+|HLA-DR-|CD303-)`, meaning "at least one of -these true." `soulcap-match`'s scorer used to treat every marker inside such -a group as independently **required** (i.e. AND, not OR) — this is why it -never considered `CL:0000043` a candidate: CL doesn't assert *all four* of -CD193+/FceR1a+/HLA-DR-/CD303-, so the group was scored as mostly gaps/ -contradictions instead of "satisfied by one alternative." **Fixed** by adding -`extract_marker_clauses()`, which preserves `|`-joined groups as true OR -clauses (satisfied by any one alternative; contradicted only if *every* -alternative is actively contradicted) instead of flattening them — see -[src/soulcap_cl_mapping/cl_match.py](../src/soulcap_cl_mapping/cl_match.py). -Re-running `soulcap-match` on this exact profile now ranks `CL:0000043` -top of the field, showing `CD123+ (1 of 2 alt.)` and `CD193+ (1 of 4 alt.)` -as matched. - ---- - -## Open follow-ups - -- File the `CL:0000623` missing-CD56-axiom gap as a repo issue (see - [cl_term_issues.md](cl_term_issues.md)), then upstream to - `obophenotype/cell-ontology` once reviewed, following the pattern of - issues [#12](https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12) - and [#13](https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13). -- ILC1's missing human-specific CL term gap has been filed as a repo issue — - see [cl_term_issues.md](cl_term_issues.md) for the tracking link. -- NK1 vs. NK3 (CD57-/CD57+) have no CL term distinguishing them yet — worth a - second CL gap entry once confirmed against more literature. -- **Fixed:** the `soulcap-match` scorer's OR-group-as-AND limitation (found - via the Basophil case above) — `extract_marker_clauses()` now models - `|`-groups as true OR. Worth re-running `--batch --lexical` across all - rows and re-checking earlier entries in this report, since other good - matches may have been suppressed the same way, not just Basophil's. -- Two sheet naming typos found (CTNK "Cytotoxice", pDC "Peripheral") need - correcting in the Google Sheet master by whoever has edit access — see the - DC family section above. -- Extend this report to the remaining `Marker Combinations` rows once - Milestone 2 (literature evidence, Dr. Diehl) covers more cell types. - ---- - -## Monocyte family - -**SOULCAP definitions:** Mono (parent, `CD14+/- CD11c+/-` — both variable, -non-discriminating), CMo (`CD14+ CD16-`), NCMo (`CD14lo/- CD16+`), IntMo -(`CD14+ CD16hi`). All four share the same Required exclusion string. - -| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source | -|---|---|---|---|---| -| Mono | monocyte | `CL:0000576` | Exact | OAK-verified (exact label); OLS4 was timing out at lookup time | -| CMo | classical monocyte | `CL:0000860` | Exact | OAK-verified (exact label) | -| NCMo | non-classical monocyte | `CL:0000875` | Exact | OAK-verified (exact label) | -| IntMo | intermediate monocyte | `CL:0002393` | Exact | OAK-verified (exact label) | - -**Rationale:** All four are clean name matches, cross-checked with OAK -(`sqlite:obo:cl`, exact label hits) after OLS4 REST search was returning -`ReadTimeout` errors when this batch was worked. Marker-axiom scoring -top-ranked unrelated myelocyte/basophil precursor terms for all four rows -(shared-negative-marker inflation, the same failure mode documented -elsewhere in this report) — these are lexical matches, not marker-confirmed. - -**CL gap — already tracked, not new:** `CL:0000860`/`CL:0000875`/`CL:0002393` -currently assert only CCR2 (CD192, high on classical / negative on -intermediate) and CX3CR1 (high on non-classical) plus lineage-exclusion -negatives — **none of them assert the CD14/CD16 axioms that actually define -these three subsets** (per Ziegler-Heitbrock et al. 2010, PMID:20628149). -This is exactly what repo issue -[#12](https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12) -(filed upstream: [CL#3665](https://github.com/obophenotype/cell-ontology/issues/3665)) -already covers — no new issue needed, just citing it here since it directly -explains why these four rows can only be matched lexically, not confirmed by -CL's current marker axioms. `CL:0000576` (plain "monocyte") has no marker -axioms at all in `cl_pro_relationships.tsv` — the same axiom-gap pattern seen -on other general parent classes (NK, ILC, cDC) — logged in `gaps.tsv`. - -**Sheet data issue:** all four rows' `Required exclusion` column reads -`CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)` — the second group is -missing a `]` after `CD123hi` (should likely read `([CD123hi]-|CD193-)`, -matching the pattern used in the cDC/pDC rows). Affects the same 4 rows -identically since they share this string. Logged in `gaps.tsv`; cannot be -fixed here (Google Sheet is the source of truth). - ---- - -## Neutrophil / Eosinophil - -**SOULCAP definitions:** share `CD3- CD56- CD14lo/- CD123-` exclusion. -Neutrophil requires `(CD15hi|CD66b+) CD193- CD16hi`; Eosinophil requires -`(CD15hi|CD66b+) CD193+ CD16-` — differ only in CD193/CD16. - -| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source | -|---|---|---|---|---| -| Neutrophil | neutrophil | `CL:0000775` | Exact | Lexical + marker (CD66b matched via OR-group; CD19-/CD3- matched) | -| Eosinophil | eosinophil | `CL:0000771` | Exact | Lexical + marker (CD193+ **directly asserted**, not inferred — strong match) | - -**Rationale:** Both are clean lexical matches (OAK-confirmed exact label), -and unlike the monocyte family, CL *does* assert relevant markers here. -`CL:0000771` directly asserts CD193 (CCR3) positive — not flagged -`(inferred only)` — which precisely matches SOULCAP's Eosinophil-defining -CD193+ requirement; both terms assert CD66b positive, satisfying the -`(CD15hi|CD66b+)` OR-group shared by both SOULCAP rows. This is one of the -stronger marker-confirmed matches in this report, not just a lexical pick. - ---- - -## B cell (parent) - -**SOULCAP definition:** `(CD14-|CD33-|CD64-) CD3- CD56-` exclusion; -`live/ CD45+ (CD20+|CD19+)` required phenotypic markers. - -| Field | Value | -|---|---| -| Proposed CL term | B cell | -| Proposed CL ID | `CL:0000236` | -| Match type | Exact | - -**Rationale:** Batch lexical search (OLS4) returned **no candidate at all** -for this row — worth noting as its own small finding: OLS4's REST search -appears to return nothing useful for the bare two-word query "B cell" (not a -sheet typo this time; the row's Full Name is exactly "B cell"). Found instead -via `soulcap-oak-match "B cell"`, which returned `CL:0000236` as a clean -exact-label/exact-synonym hit. Marker-axiom scoring found no useful -candidates either (`CL:0000236` has no rows in `cl_pro_relationships.tsv` — -same parent-class axiom-gap pattern as NK/ILC/cDC/plain-monocyte). Logged in -`gaps.tsv`. - ---- - -## Plasma cell lineage — ASC / Plasmablast / Plasma Cell - -**SOULCAP definitions:** ASC (parent, `CD19+ CD27+/hi CD38hi`), PB -(`+ CD138-`), PC (`+ CD138+`, ideal `CD20-`). - -| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source | -|---|---|---|---|---| -| ASC | antibody secreting cell | `CL:0000946` | Exact | Lexical | -| PB | plasmablast | `CL:0000980` | Exact | Lexical | -| PC | plasma cell | `CL:0000786` | Exact | Lexical | - -**Rationale:** All three are clean exact-name lexical matches. Marker-axiom -scoring found nothing useful for any of the three (top candidates were -mouse-nomenclature "B220" memory B cell terms — see the B cell maturation -tree below for why that pattern recurs across this whole lineage) — these -are lexical matches, not marker-confirmed. PC's marker top-1 (`CL:0000962` -Bm2 B cell) showed a conflict on the *ideal* `CD20-` marker; non-disqualifying -and irrelevant once the correct lexical match is used instead. - ---- - -## B cell maturation tree — Transitional / Mature / Naive / Double-negative - -**SOULCAP definitions:** Transitional (parent, **no marker data in the -sheet at all** — see `gaps.tsv`), T1/T2 B (`CD27- (CD38hi|CD10hi) CD24hi`), -Mature B (parent, `CD27- CD38lo/-`), T3 (`CD27- (CD38lo/-|CD10lo) CD24+ -IgD+`), Naive (`CD27- (CD38lo/-|CD10-) CD24- IgD+`), BDN (parent, `CD27- -(CD38lo/-|CD10-) CD24- IgD-`), BDN1–4 (BDN + CD21/CD11c/CD185/IgE -combinations). - -| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source | -|---|---|---|---|---| -| T1/T2 B | transitional stage B cell | `CL:0000818` | Broad | OAK-verified — SOULCAP combines T1+T2 into one gate; CL:0000818 is the parent of both `CL:0000958` (T1) and `CL:0000959` (T2), which CL keeps separate | -| Mature B | mature B cell | `CL:0000785` | Exact | Lexical | -| T3 | T3 B cell | `CL:0000960` | Exact | Lexical | -| Naive | naive B cell | `CL:0000788` | Exact | Lexical | -| BDN | double negative memory B cell | `CL:0000981` | Exact | OAK-verified — batch lexical had wrongly picked `CL:0002103` "**IgG-positive** double negative memory B cell," an overly-specific child term | -| BDN1 / BDN2 / BDN3 / BDN4 | double negative memory B cell | `CL:0000981` | Broad | No CL subtype terms exist for this DN1–4 scheme — see CL gap below | - -**Rationale:** Marker-axiom scoring was useless across this entire tree — -every row's top candidates were CL terms using **mouse** B-cell-development -nomenclature (`B220-positive/negative CD38-positive/negative ...`), which -share enough generic negative markers with SOULCAP's human panel to score -well without being biologically relevant. All picks above are lexical, -cross-checked with direct OAK verification wherever the batch lexical output -looked suspicious. - -**CL gap — BDN1–4:** SOULCAP defines four "double negative" B cell subsets -(BDN1–4) using CD21/CD11c/CD185(CXCR5)/IgE combinations — this is the -DN1–DN4 atypical/age-associated B cell classification scheme from the -autoimmunity/aging literature. Direct searches for "DN1 B cell" through -"DN4 B cell" and "atypical memory B cell" returned **zero CL hits** — CL only -has the general parent `CL:0000981` "double negative memory B cell," with no -further subtyping. All four SOULCAP subsets currently collapse to the same -Broad match. Logged in `gaps.tsv`. - -**Note — Transitional (parent):** not mapped here (no marker data to derive -a match from, and the row is presumably meant as a pure category label like -Mature B / BDN / Bmem) — see `gaps.tsv` for the existing `no_reasonable_cl_match` -entry. If a plain label match is wanted despite the empty markers, `CL:0000818` -"transitional stage B cell" is the obvious lexical candidate, parallel to how -T1/T2 B was resolved above. - ---- - -## Memory B cell tree - -**SOULCAP definitions:** Bmem (parent, `CD27+ CD38lo/-`), then split by -Ig isotype: IgD only (`IgD+ IgM-`), Unswitched (`IgD+ IgM+`), IgM only -(`IgD- IgM+`), Switched (parent, `IgD- IgM-`), then IgA/IgG/IgE -(Switched + single Ig-class positive). - -| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source | -|---|---|---|---|---| -| Bmem | memory B cell | `CL:0000787` | Exact | Lexical | -| IgD only | — | — | — | **No CL match found — see gap below** | -| Unswitched | unswitched memory B cell | `CL:0000970` | Exact | Lexical, OAK-confirmed | -| IgM only | IgM memory B cell | `CL:0000971` | Exact | Lexical, OAK-confirmed | -| Switched | class switched memory B cell | `CL:0000972` | Exact | OAK-verified — batch lexical had wrongly picked `CL:0002117` "**IgG-negative** class switched memory B cell," an overly-specific child term | -| IgA | IgA memory B cell | `CL:0000973` | Exact | Lexical, OAK-confirmed | -| IgG | IgG memory B cell | `CL:0000979` | Exact | OAK-verified — batch lexical had wrongly picked `CL:0002117` "**IgG-negative** class switched memory B cell," the **opposite polarity** of what SOULCAP's IgG row defines | -| IgE | IgE memory B cell | `CL:0000948` | Exact | Lexical, OAK-confirmed | - -**Rationale:** Same pattern as the maturation tree — marker scoring found -nothing useful (mouse B220 terms again), so these are lexical matches. Two -of the batch's raw lexical picks (Switched, IgG) were caught and corrected -here: both had landed on `CL:0002117`, a specific IgG-**negative** subtype, -which is simply wrong for the IgG row (opposite Ig-class polarity) and -imprecise for Switched (too specific — excludes IgG-switched cells from the -"switched" parent category, which shouldn't exclude any Ig class). - -**CL gap — "IgD only" memory B cell:** SOULCAP distinguishes IgD⁺IgM⁻ -("IgD only") from IgD⁺IgM⁺ ("Unswitched") memory B cells as two separate -populations. Direct searches for "IgD-positive memory B cell" and "IgD only -memory B cell" returned **zero CL hits**; the only IgD-related term found is -`CL:0001053` "IgD-negative memory B cell" — the **opposite** polarity, not a -match. This looks like a genuine CL gap (no term for the IgD⁺IgM⁻ subset) -rather than a naming mismatch — flagged, not mapped. Logged in `gaps.tsv`. - ---- - -# T cell tree - -The T cell branch is much larger (83 remaining rows) and includes 26 rows -with **no `Full Name` populated in the sheet at all** — those are documented -separately below rather than guessed at. Marker-axiom scoring was uniformly -useless across every row in this branch (top candidates were consistently -unrelated myeloid/NK terms — `Gr1-low myeloid suppressor cell`, `myeloid -dendritic cell, human` — sharing generic lineage-exclusion markers with -almost every SOULCAP T cell row). Every mapping below is lexical/name-based, -verified directly via OAK rather than trusted from the raw batch output, -since the raw lexical picks were wrong or missing for a large fraction of -this branch too (see notes per group). - -## Core T cell lineage - -| SOULCAP | Proposed CL term | Proposed CL ID | Match type | -|---|---|---|---| -| T cell | T cell | `CL:0000084` | Exact | -| TCRab | alpha-beta T cell | `CL:0000789` | Exact | -| TCRgd | gamma-delta T cell | `CL:0000798` | Exact | -| iNKT | mature NK T cell | `CL:0000814` | Exact | -| MAIT | mucosal-associated invariant T cell | `CL:0000940` | Exact | -| CD4+ TCRab T cell | CD4-positive, alpha-beta T cell | `CL:0000624` | Exact | -| CD8+ TCRab T cell | CD8-positive, alpha-beta T cell | `CL:0000625` | Exact | -| CD4-/CD8- TCRgd | CD4-negative, CD8-negative gamma-delta T cell | `CL:0000803` | Exact | - -**Note — iNKT / `CL:0000814`:** this is the **same term** already flagged in -[repo issue #13](https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13) -as needing a rename to "iNKT cell" (currently labelled "mature NK T cell," -filed upstream, awaiting CL maintainer review — see `cl_term_issues.md`). The -mapping is correct either way; just noting it inherits that pending -correction. - -## Combined-lineage (αβ+γδ) and double-positive/double-negative gaps - -SOULCAP has four rows that combine alpha-beta **and** gamma-delta T cells -under one CD4/CD8 gate (`CD4+ T cell`, `CD8+ T cell`, `CD4+/CD8+ T cell`, -`CD4-/CD8- T cell`), plus double-positive and double-negative alpha-beta and -gamma-delta variants. CL organizes CD4/CD8 status **primarily under the -alpha-beta lineage** and does not have combined αβ+γδ terms, a clean -double-positive alpha-beta term, or a *peripheral* (non-thymic) double-negative -alpha-beta term — direct searches for "double positive T cell," "double -negative alpha-beta T cell," and "CD4-positive T cell" (unqualified) all -returned nothing or only thymocyte-stage terms (thymocytes are the wrong -tissue/maturity stage for a blood/PBMC flow panel). - -| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Note | -|---|---|---|---|---| -| CD4+ T cell | CD4-positive, alpha-beta T cell | `CL:0000624` | Broad | Alpha-beta dominates the CD4+ compartment; CL has no combined αβ+γδ CD4+ term | -| CD8+ T cell | CD8-positive, alpha-beta T cell | `CL:0000625` | Broad | Same reasoning | -| CD4+/CD8+ T cell | alpha-beta T cell | `CL:0000789` | Broad — **gap** | No CD4+CD8+ double-positive term found at all (peripheral DP T cells are themselves biologically unusual) | -| CD4-/CD8- T cell | T cell | `CL:0000084` | Broad — **gap** | No peripheral (non-thymic) double-negative term spanning both TCR types | -| CD4+/CD8+ TCRab T cell | alpha-beta T cell | `CL:0000789` | Broad — **gap** | Same DP gap, alpha-beta-restricted | -| CD4-/CD8- TCRab T cell | alpha-beta T cell | `CL:0000789` | Broad — **gap** | Only `CL:0002489` "double negative **thymocyte**" found — wrong tissue/stage | -| CD4+ TCRgd T cell | gamma-delta T cell | `CL:0000798` | Broad — **gap** | CD4+ gd T cells are atypical/rare in normal blood; no CL term found | -| CD8+ TCRgd T cell | gamma-delta T cell | `CL:0000798` | Broad — **gap** | No CL term found | -| CD4+/CD8+ TCRgd | gamma-delta T cell | `CL:0000798` | Broad — **gap** | No CL term found | - -All seven "gap" rows above are logged in `gaps.tsv` as one grouped entry -(CL's CD4/CD8 vocabulary being alpha-beta-centric), rather than seven -separate entries, since it's the same underlying structural gap. - -## CD56+ T cell family - -SOULCAP defines 13 CD56+ T cell variants crossing CD56 positivity with -CD4/CD8/DP/DN status and TCRab/TCRgd lineage. CL has exactly **one** term at -this level of granularity: - -| SOULCAP | Proposed CL term | Proposed CL ID | Match type | -|---|---|---|---| -| CD56+ T cell, CD56+ CD4 T cell, CD56+ CD8 T cell, CD56+ TCRab, CD56+ CD4+ TCRab, CD56+ CD8+ TCRab, CD56+ CD4+/CD8+ TCRab, CD56+ CD4-/CD8- TCRab, CD56+ TCRgd, CD56+ CD4+ TCRgd, CD56+ CD8+ TCRgd, CD56+ CD4+/CD8+ TCRgd, CD56+ CD8-/CD8- TCRgd | mature NK T cell, human | `CL:4052055` | Broad (all 13) | - -**Rationale:** `CL:4052055`'s current label is "Mature NK T cell, human" — -this is the **other** term from repo issue #13, already proposed for renaming -to "CD56-positive T cell, human" (filed upstream as -[CL#3663](https://github.com/obophenotype/cell-ontology/issues/3663), awaiting -review). It is the correct conceptual match for this whole family; CL simply -doesn't subdivide "CD56-positive T cell" by CD4/CD8/TCR-type the way -SOULCAP's panel does, so all 13 rows collapse to the same Broad match. The -raw batch lexical output was **unreliable** for this family (results ranged -from `hematopoietic stem cell` to `mature neutrophil` — direct OAK -verification via "mature NK T cell, human" was necessary, not optional). -Logged as one grouped `cl_axiom_gap`-style entry in `gaps.tsv`. - -## Naive / central memory / effector memory / TEMRA tree - -SOULCAP crosses four differentiation states (naive, central memory Tcm, -effector memory Tem, CD45RA+ effector memory/TEMRA) with CD4/CD8 status and, -separately, TCRab/TCRgd lineage — 24 rows. CL has clean, well-established -terms for the **CD4/CD8 × alpha-beta** combinations; it does not have -gamma-delta-specific or lineage-combined (αβ+γδ) versions of any of them. - -| SOULCAP | Proposed CL term | Proposed CL ID | Match type | -|---|---|---|---| -| Tnaive (general) | naive T cell | `CL:0000898` | Exact | -| CD4+ TCRab Tnaive | naive thymus-derived CD4-positive, alpha-beta T cell | `CL:0000895` | Exact | -| CD8+ TCRab Tnaive | naive thymus-derived CD8-positive, alpha-beta T cell | `CL:0000900` | Exact | -| CD4+ TCRab Tcm | central memory CD4-positive, alpha-beta T cell | `CL:0000904` | Exact | -| CD8+ TCRab Tcm | central memory CD8-positive, alpha-beta T cell | `CL:0000907` | Exact | -| CD4+ TCRab Tem | effector memory CD4-positive, alpha-beta T cell | `CL:0000905` | Exact | -| CD8+ TCRab Tem | effector memory CD8-positive, alpha-beta T cell | `CL:0000913` | Exact | -| CD4+ TCRab Temra | effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated | `CL:4030002` | Exact | -| CD4+ Tnaive (general) | naive thymus-derived CD4-positive, alpha-beta T cell | `CL:0000895` | Broad | -| CD8+ Tnaive (general) | naive thymus-derived CD8-positive, alpha-beta T cell | `CL:0000900` | Broad | -| CD4+ Tcm (general) | central memory CD4-positive, alpha-beta T cell | `CL:0000904` | Broad | -| CD8+ Tcm (general) | central memory CD8-positive, alpha-beta T cell | `CL:0000907` | Broad | -| CD4+ Tem (general) | effector memory CD4-positive, alpha-beta T cell | `CL:0000905` | Broad | -| CD8+ Tem (general) | effector memory CD8-positive, alpha-beta T cell | `CL:0000913` | Broad | -| CD4+ Temra (general) | effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated | `CL:4030002` | Broad | -| Tcm (general, no CD4/CD8) | T cell | `CL:0000084` | Broad — **gap** | -| Tem (general, no CD4/CD8) | T cell | `CL:0000084` | Broad — **gap** | -| Temra (general, no CD4/CD8) | T cell | `CL:0000084` | Broad — **gap** | -| CD4+ TCRgd Tnaive, CD4+ TCRgd Tcm, CD4+ TCRgd Tem, CD4+ TCRgd Temra | gamma-delta T cell | `CL:0000798` | Broad — **gap** | -| CD8+ TCRgd Tnaive, CD8+ TCRgd Tcm, CD8+ TCRgd Tem | gamma-delta T cell | `CL:0000798` | Broad — **gap** | -| CD8+ Temra (general), CD8+ TCRab Temra | effector memory CD8-positive, alpha-beta T cell | `CL:0000913` | Broad — **gap** | - -**Rationale:** Direct OAK searches confirm CL has **no** generic -"central/effector memory T cell" term spanning both CD4 and CD8 (only the -CD4-specific and CD8-specific versions exist), **no** gamma-delta-specific -differentiation-state terms at all, and — asymmetrically — **no CD8+-specific -TEMRA term** with the "terminally differentiated" qualifier that exists for -CD4+ (`CL:4030002`). That last asymmetry is worth a closer look; not filed as -a formal CL gap yet since it needs a second check against CL's own hierarchy -before concluding it's a genuine omission rather than something named -differently. All "gap" rows above are logged in `gaps.tsv`, grouped by -category rather than one row each. - -## Rows with no `Full Name` in the sheet — not mapped - -26 rows in this branch have an **empty `Full Name` field** in the master -sheet (`Conv TCRab` and its CD4+/CD8+/DP/DN children; `T helper`, `T -cytotoxic`, `Tfh`, `CD4 PanT helper`, `CD4 PanT Treg`; `ConT Treg-like`, -`ConT Tfh-like`, `Th1-like` / `Th2-like` / `Th9-like` / `Th17-like`; and the -`Vg9`/`Vd1`/`Vd2`/`Vd3`/`Vg9 Vd1`/`Vg9 Vd2` gamma-delta TCR-usage subsets). -**Not mapped here** — inventing a name for an unnamed row isn't a call this -report should make. - -Two things worth flagging explicitly: - -1. **A likely data bug**, not just a missing name: `Th1-like`, `Th2-like`, - `Th9-like`, and `Th17-like` each appear **twice** in the sheet. One copy - (parented under "CD4 ConT") has iNKT-style `TCRVa24-Ja18`/`CD1d-a-GalCer` - marker strings that look like they were copy-pasted from an adjacent iNKT - row rather than genuine Th-subset markers. The other copy (no parent) has - the biologically-correct Th-subset chemokine receptor panel (`CD183`/CXCR3, - `CD185`/CXCR5, `CD194`/CCR4, `CD196`/CCR6) matching the classic - Th1/Th2/Th9/Th17 definitions. This looks like a genuine sheet error, not - two intentional variants. -2. **For when these get named**, a few obvious CL matches are already - confirmed and ready: `T helper` → `CL:0000912` "helper T cell"; `T - cytotoxic` → `CL:0000910` "cytotoxic T cell". The rest would need their - own verification once named. - -Logged as one grouped entry in `gaps.tsv` rather than 26 separate rows. -rather than a naming mismatch — flagged, not mapped. Logged in `gaps.tsv`. +# Candidate CL mappings + +Generated from mappings/curated_mappings.tsv by soulcap-sssom. +All entries are proposals. Marker compatibility alone does not establish equivalence. +Evidence uses CD synonym tokens in the local CL-PRO snapshot; species, tissue, and unrepresented markers still require review. +Numeric confidence is omitted pending calibration. Blank evidence fields mean evidence has not been captured in the registry. +Original detailed rationale: [narrative](candidate_cl_mappings_narrative.md). + +| SOULCAP ID | Cell type | CL ID | Relation | Marker evidence | Review | +|---|---|---|---|---|---| +| SOULCAP:SC000001 | Natural Killer Cell | CL:0000623 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000002 | Natural Killer Cell 2 | CL:0000938 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000003 | Cytotoxic Natural Killer Cell | CL:0000939 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000004 | Natural Killer Cell 1 | CL:0000939 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000005 | Natural Killer Cell 3 | CL:0000939 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000006 | Innate Lymphoid Cell Progenitor | CL:0001074 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000007 | Innate Lymphoid Cell | CL:0001065 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000008 | Innate Lymphoid Cell 1 | CL:0001067 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000009 | Innate Lymphoid Cell 2 | CL:0001081 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000010 | Innate Lymphoid Cell 3 | CL:0001078 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000011 | Conventional Dendritic Cell | CL:0000990 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000012 | Conventional Dendritic Cell 1 | CL:0002394 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000013 | Conventional Dendritic Cell 2 | CL:0002399 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000014 | Plasmacytoid Dendritic Cell | CL:0001058 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000015 | Basophil | CL:0000043 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000016 | Basophil | CL:0000043 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000017 | Monocyte | CL:0000576 | skos:exactMatch | invalid_profile | needs_review | +| SOULCAP:SC000018 | Classical Monocyte | CL:0000860 | skos:exactMatch | invalid_profile | needs_review | +| SOULCAP:SC000019 | Non-classical Monocyte | CL:0000875 | skos:exactMatch | invalid_profile | needs_review | +| SOULCAP:SC000020 | Intermediate Monocyte | CL:0002393 | skos:exactMatch | invalid_profile | needs_review | +| SOULCAP:SC000021 | Neutrophil | CL:0000775 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000022 | Eosinophil | CL:0000771 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000023 | B cell | CL:0000236 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000024 | Antibody Secreting Cell | CL:0000946 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000025 | Plasmablast | CL:0000980 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000026 | Plasma Cell | CL:0000786 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000028 | Transitonal B cell 1 and 2 | CL:0000818 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000029 | Mature B cell | CL:0000785 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000030 | Transitional B cell 3 | CL:0000960 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000031 | Naive B cell | CL:0000788 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000032 | Double Negative B cells | CL:0000981 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000033 | Double Negative B cell 1 | CL:0000981 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000034 | Double Negative B cell 2 | CL:0000981 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000035 | Double Negative B cell 3 | CL:0000981 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000036 | Double Negative B cell 4 | CL:0000981 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000037 | Memory B cell | CL:0000787 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000039 | Unswitched Memory B cell | CL:0000970 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000040 | IgM-only Memory B cell | CL:0000971 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000041 | Switched Memory B cell | CL:0000972 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000042 | IgA-Class Switched B cell | CL:0000973 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000043 | IgG-Class Switched B cell | CL:0000979 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000044 | IgE-Class Switched B cell | CL:0000948 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000045 | T lymphocyte | CL:0000084 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000060 | alpha/beta T cell | CL:0000789 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000061 | gamma/delta T cell | CL:0000798 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000059 | Invariant Natural Killer T cell | CL:0000814 | skos:exactMatch | invalid_profile | needs_review | +| SOULCAP:SC000074 | Mucosal-associated Invariant T cell | CL:0000940 | skos:exactMatch | invalid_profile | needs_review | +| SOULCAP:SC000066 | CD4+ alpha/beta T cell | CL:0000624 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000067 | CD8+ alpha/beta T cell | CL:0000625 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000073 | CD4-/CD8- gamma/delta T cell | CL:0000803 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000062 | alpha/beta and gamma/delta CD4+ T cells | CL:0000624 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000063 | alpha/beta and gamma/delta CD8+ T cells | CL:0000625 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000064 | alpha/beta and gamma/delta CD4+ and CD8+ T cells | CL:0000789 | skos:broadMatch | no_marker_support | needs_review | +| SOULCAP:SC000065 | alpha/beta and gamma/delta CD4- and CD8- T cells | CL:0000084 | skos:broadMatch | no_marker_support | needs_review | +| SOULCAP:SC000068 | CD4+ and CD8+ alpha/beta T cell | CL:0000789 | skos:broadMatch | no_marker_support | needs_review | +| SOULCAP:SC000069 | CD4- and CD8- alpha/beta T cell | CL:0000789 | skos:broadMatch | no_marker_support | needs_review | +| SOULCAP:SC000070 | CD4+ gamma/delta T cell | CL:0000798 | skos:broadMatch | no_marker_support | needs_review | +| SOULCAP:SC000071 | CD8+ gamma/delta T cell | CL:0000798 | skos:broadMatch | no_marker_support | needs_review | +| SOULCAP:SC000072 | CD4+/CD8+ gamma/delta T cell | CL:0000798 | skos:broadMatch | no_marker_support | needs_review | +| SOULCAP:SC000046 | CD56+ T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000047 | CD56+ CD4 T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000048 | CD56+ CD8 T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000049 | CD56+ alpha/beta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000050 | CD56+ CD4+ alpha/beta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000051 | CD56+ CD8+ alpha/beta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000052 | CD56+ CD4+/CD8+ alpha/beta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000053 | CD56+ CD4-/CD8- alpha/beta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000054 | CD56+ gamma/delta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000055 | CD56+ CD4+ gamma/delta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000056 | CD56+ CD8+ gamma/delta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000057 | CD56+ CD4+/CD8+ gamma/delta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000058 | CD56+ CD8-/CD8- gamma/delta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000087 | Naive alpha/beta and gamma/delta T cell | CL:0000898 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000089 | CD4+ naive alpha/beta T cell | CL:0000895 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000092 | CD8+ naive alpha/beta T cell | CL:0000900 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000082 | CD4+ central memory alpha/beta T cell | CL:0000904 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000085 | CD8+ central memory alpha/beta T cell | CL:0000907 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000096 | CD4+ effector memory alpha/beta T cell | CL:0000905 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000099 | CD8+ effector memory alpha/beta T cell | CL:0000913 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000103 | CD4+ CD45RA+ effector memory alpha/beta T cell | CL:4030002 | skos:exactMatch | no_marker_support | needs_review | + +## SOULCAP:SC000001 — Natural Killer Cell + +Proposed skos:exactMatch to CL:0000623 (natural killer cell). + +CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the defining positive CD56 marker is absent — a documented CL gap (cl_term_issues.md), not confirmed here. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative) [direct]; Required exclusion: CD3:negative [inferred]; Required exclusion: CD19:negative [inferred]. + +Gaps: Required exclusion: CD34:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD56:positive OR CD56:high); Required phenotypic markers: CD127:negative; Ideal phenotypic markers: (CD33:negative OR CD64:negative). + +Untested cl markers: CD20; CD3E. + + +## SOULCAP:SC000002 — Natural Killer Cell 2 + +Proposed skos:exactMatch to CL:0000938 (CD16-negative, CD56-bright natural killer cell, human). + + + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative) [inferred]; Required exclusion: CD3:negative [inferred]; Required exclusion: CD19:negative [inferred]; Required phenotypic markers: CD56:high [direct]; Required phenotypic markers: (CD16:negative OR CD16:low) [direct]. + +Gaps: Required exclusion: CD34:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD127:negative; Required phenotypic markers: CD57:negative. + +Untested cl markers: CD20; CD3E; CD84. + + +## SOULCAP:SC000003 — Cytotoxic Natural Killer Cell + +Proposed skos:exactMatch to CL:0000939 (CD16-positive, CD56-dim natural killer cell, human). + + + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative) [inferred]; Required exclusion: CD3:negative [inferred]; Required exclusion: CD19:negative [inferred]; Required phenotypic markers: (CD56:positive OR CD56:high) [direct]; Required phenotypic markers: CD16:positive [direct]. + +Gaps: Required exclusion: CD34:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD127:negative. + +Untested cl markers: CD20; CD3E. + + +## SOULCAP:SC000004 — Natural Killer Cell 1 + +Proposed skos:broadMatch to CL:0000939 (CD16-positive, CD56-dim natural killer cell, human). + +CL does not distinguish CD57 status within this subtype. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative) [inferred]; Required exclusion: CD3:negative [inferred]; Required exclusion: CD19:negative [inferred]; Required phenotypic markers: CD56:positive [direct]; Required phenotypic markers: CD16:positive [direct]. + +Gaps: Required exclusion: CD34:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD127:negative; Required phenotypic markers: CD57:negative. + +Untested cl markers: CD20; CD3E. + + +## SOULCAP:SC000005 — Natural Killer Cell 3 + +Proposed skos:broadMatch to CL:0000939 (CD16-positive, CD56-dim natural killer cell, human). + +CL does not distinguish CD57 status within this subtype. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative) [inferred]; Required exclusion: CD3:negative [inferred]; Required exclusion: CD19:negative [inferred]; Required phenotypic markers: CD56:positive [direct]; Required phenotypic markers: CD16:positive [direct]. + +Gaps: Required exclusion: CD34:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD127:negative; Required phenotypic markers: CD57:positive. + +Untested cl markers: CD20; CD3E. + + +## SOULCAP:SC000006 — Innate Lymphoid Cell Progenitor + +Proposed skos:broadMatch to CL:0001074 (CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human). + +SOULCAP profile does not test CD34; CL:0001073 (CD34-negative) and CL:0001082 (immature innate lymphoid cell) are equally marker-consistent alternatives, not ruled out. + +Uncertain proposal: yes. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD3:negative [inferred]; Required phenotypic markers: CD56:positive [direct]; Required phenotypic markers: CD117:positive [direct]. + +Gaps: Required phenotypic markers: CD45:positive; Required phenotypic markers: CD127:positive; Required phenotypic markers: CD294:negative. + +Untested cl markers: CD19; CD34; CD3E. + + +## SOULCAP:SC000007 — Innate Lymphoid Cell + +Proposed skos:exactMatch to CL:0001065 (innate lymphoid cell). + +Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, not CL-marker-supported. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [direct]; Required exclusion: CD19:negative [direct]; Required phenotypic markers: CD3:negative [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD34:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD127:positive. + +Untested cl markers: CD3E. + + +## SOULCAP:SC000008 — Innate Lymphoid Cell 1 + +Proposed skos:exactMatch to CL:0001067 (group 1 innate lymphoid cell). + +Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only. No human-specific CL term exists for group 1 (unlike group 2/3); filed as CL gap, repo issue #14. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required exclusion: CD19:negative [inferred]; Required phenotypic markers: CD3:negative [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD34:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD127:positive; Required phenotypic markers: CD56:negative; Required phenotypic markers: CD117:negative; Required phenotypic markers: CD294:negative. + +Untested cl markers: CD3E. + + +## SOULCAP:SC000009 — Innate Lymphoid Cell 2 + +Proposed skos:exactMatch to CL:0001081 (group 2 innate lymphoid cell, human). + +Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had picked the wrong-species term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required exclusion: CD19:negative [inferred]; Required phenotypic markers: CD3:negative [inferred]; Required phenotypic markers: CD127:positive [direct]; Required phenotypic markers: CD294:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD34:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD56:negative; Required phenotypic markers: (CD117:low OR CD117:negative). + +Untested cl markers: CD161; CD25; CD3E; CDW127. + + +## SOULCAP:SC000010 — Innate Lymphoid Cell 3 + +Proposed skos:exactMatch to CL:0001078 (group 3 innate lymphoid cell, human). + +Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had over-specified to an NKp44+ subtype. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required exclusion: CD19:negative [inferred]; Required phenotypic markers: CD3:negative [inferred]; Required phenotypic markers: CD127:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD34:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD56:low OR CD56:negative); Required phenotypic markers: CD117:positive; Required phenotypic markers: CD294:negative. + +Untested cl markers: CD3E; CDW127. + + +## SOULCAP:SC000011 — Conventional Dendritic Cell + +Proposed skos:exactMatch to CL:0000990 (conventional dendritic cell). + +Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Ideal exclusion: CD3:negative [inferred]; Ideal exclusion: CD19:negative [inferred]; Ideal exclusion: CD56:negative [inferred]; Required phenotypic markers: CD11C:high [direct]. + +Gaps: Required exclusion: (CD123:not:high OR CD193:negative); Required exclusion: (CD123:not:high OR CD303:negative); Required exclusion: CD14:negative; Required exclusion: CD16:negative; Ideal exclusion: CD127:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD33:high OR CD64:positive); Required phenotypic markers: HLA-DR:positive. + +Untested cl markers: CD11; CD20; CD34; CD3E. + + +## SOULCAP:SC000012 — Conventional Dendritic Cell 1 + +Proposed skos:exactMatch to CL:0002394 (CD141-positive myeloid dendritic cell). + +Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had wrongly assigned cDC1 the same term as cDC2. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: (CD123:not:high OR CD193:negative) [inferred]; Required exclusion: (CD123:not:high OR CD303:negative) [inferred]; Ideal exclusion: CD3:negative [inferred]; Ideal exclusion: CD19:negative [inferred]; Ideal exclusion: CD56:negative [inferred]; Required phenotypic markers: CD11C:high [inferred]; Required phenotypic markers: CD141:positive [direct]. + +Gaps: Required exclusion: CD14:negative; Required exclusion: CD16:negative; Ideal exclusion: CD127:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD33:high OR CD64:positive); Required phenotypic markers: HLA-DR:positive; Required phenotypic markers: CD1C:negative; Ideal phenotypic markers: CD172A:negative; Ideal phenotypic markers: FCER1A:negative. + +Untested cl markers: CD11; CD20; CD34; CD3E. + + +## SOULCAP:SC000013 — Conventional Dendritic Cell 2 + +Proposed skos:exactMatch to CL:0002399 (CD1c-positive myeloid dendritic cell). + +Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed correct by cross-check against cDC1. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: (CD123:not:high OR CD193:negative) [inferred]; Required exclusion: (CD123:not:high OR CD303:negative) [inferred]; Ideal exclusion: CD3:negative [inferred]; Ideal exclusion: CD19:negative [inferred]; Ideal exclusion: CD56:negative [inferred]; Required phenotypic markers: CD11C:high [inferred]; Required phenotypic markers: CD1C:positive [direct]. + +Gaps: Required exclusion: CD14:negative; Required exclusion: CD16:negative; Ideal exclusion: CD127:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD33:high OR CD64:positive); Required phenotypic markers: HLA-DR:positive; Required phenotypic markers: (CD141:low OR CD141:negative); Ideal phenotypic markers: CD172A:positive; Ideal phenotypic markers: (FCER1A:low OR FCER1A:negative). + +Untested cl markers: CD11; CD20; CD34; CD3E. + + +## SOULCAP:SC000014 — Plasmacytoid Dendritic Cell + +Proposed skos:exactMatch to CL:0001058 (plasmacytoid dendritic cell, human). + +Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only. Sheet's Full Name reads 'Peripheral Dendritic Cell' (likely a typo for 'Plasmacytoid'); not yet corrected at source. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Ideal exclusion: CD56:negative [inferred]; Ideal exclusion: CD19:negative [inferred]; Ideal exclusion: CD14:negative [direct]. + +Gaps: Ideal exclusion: CD127:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD33:low OR CD33:positive OR CD123:high); Required phenotypic markers: (CD193:negative OR FCER1A:negative OR CD303:positive). + +Untested cl markers: CD11; CD11C; CD20; CD34; CD3E. + + +## SOULCAP:SC000015 — Basophil + +Proposed skos:exactMatch to CL:0000043 (mature basophil). + + + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Ideal exclusion: CD56:negative [inferred]; Ideal exclusion: CD19:negative [inferred]; Required phenotypic markers: (CD33:positive OR CD123:positive) [inferred]; Required phenotypic markers: (CD193:positive OR FCER1A:positive OR HLA-DR:negative OR CD303:negative) [inferred]. + +Gaps: Ideal exclusion: CD127:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD14:negative; Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Ideal phenotypic markers: FCER1A:positive; Ideal phenotypic markers: HLA-DR:negative. + +Untested cl markers: CD11; CD11B; CD154; CD203C; CD3E; CD40; CD40L; CD40LG; CD67; CD8; CD87; CD8A. + + +## SOULCAP:SC000016 — Basophil + +Proposed skos:exactMatch to CL:0000043 (mature basophil). + + + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Ideal exclusion: CD56:negative [inferred]; Ideal exclusion: CD19:negative [inferred]; Required phenotypic markers: CD193:positive [inferred]; Required phenotypic markers: CD123:positive [inferred]. + +Gaps: Required exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD127:negative; Required phenotypic markers: CD45:positive. + +Untested cl markers: CD11; CD11B; CD154; CD203C; CD3E; CD40; CD40L; CD40LG; CD67; CD8; CD87; CD8A. + + +## SOULCAP:SC000017 — Monocyte + +Proposed skos:exactMatch to CL:0000576 (monocyte). + +OAK-verified exact label match (OLS4 was timing out); CL:0000576 has no marker axioms recorded at all. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID. + +Uncertain proposal: no. +Marker evidence: invalid_profile. +Curator evidence: Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.. +Current sheet mapping: agrees CL:0000576. +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Errors: Required exclusion: unexpected ')' in group. + + +## SOULCAP:SC000018 — Classical Monocyte + +Proposed skos:exactMatch to CL:0000860 (classical monocyte). + +OAK-verified exact label match. CL:0000860 asserts only CCR2 (CD192) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID. + +Uncertain proposal: no. +Marker evidence: invalid_profile. +Curator evidence: Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.. +Current sheet mapping: agrees CL:0000860. +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Errors: Required exclusion: unexpected ')' in group. + + +## SOULCAP:SC000019 — Non-classical Monocyte + +Proposed skos:exactMatch to CL:0000875 (non-classical monocyte). + +OAK-verified exact label match. CL:0000875 asserts only CX3CR1 and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID. + +Uncertain proposal: no. +Marker evidence: invalid_profile. +Curator evidence: Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.. +Current sheet mapping: agrees CL:0000875. +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Errors: Required exclusion: unexpected ')' in group. + + +## SOULCAP:SC000020 — Intermediate Monocyte + +Proposed skos:exactMatch to CL:0002393 (intermediate monocyte). + +OAK-verified exact label match. CL:0002393 asserts only CCR2 (CD192, negative) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID. + +Uncertain proposal: no. +Marker evidence: invalid_profile. +Curator evidence: Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.. +Current sheet mapping: agrees CL:0002393. +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Errors: Required exclusion: unexpected ')' in group. + + +## SOULCAP:SC000021 — Neutrophil + +Proposed skos:exactMatch to CL:0000775 (neutrophil). + + + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required exclusion: CD56:negative [inferred]; Ideal exclusion: CD19:negative [inferred]; Required phenotypic markers: (CD15:high OR CD66B:positive) [inferred]. + +Gaps: Required exclusion: (CD14:low OR CD14:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Required phenotypic markers: CD45:positive; Required phenotypic markers: CD193:negative; Required phenotypic markers: CD16:high; Ideal phenotypic markers: (CD64:negative OR CD33:positive). + +Untested cl markers: CD11; CD11B; CD32; CD3E; CD43; CD67; CD8; CD87; CD8A. + + +## SOULCAP:SC000022 — Eosinophil + +Proposed skos:exactMatch to CL:0000771 (eosinophil). + +CD193 (CCR3) positive is directly asserted (not inferred) on CL:0000771, precisely matching SOULCAP's defining CD193+ requirement — one of the stronger marker-confirmed matches in this set. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required exclusion: CD56:negative [inferred]; Ideal exclusion: CD19:negative [inferred]; Required phenotypic markers: (CD15:high OR CD66B:positive) [inferred]; Required phenotypic markers: CD193:positive [direct]. + +Gaps: Required exclusion: (CD14:low OR CD14:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Required phenotypic markers: CD45:positive; Required phenotypic markers: CD16:negative; Ideal phenotypic markers: (CD64:negative OR CD33:positive). + +Untested cl markers: CD11; CD11B; CD191; CD3E; CD44; CD67; CD69; CD8; CD87; CD8A; CD9; CDW44. + + +## SOULCAP:SC000023 — B cell + +Proposed skos:exactMatch to CL:0000236 (B cell). + +OLS4 REST search returned zero hits for this exact query; found instead via OAK. CL:0000236 has no marker axioms recorded. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD20:positive OR CD19:positive); Ideal phenotypic markers: CD20:positive. + + +## SOULCAP:SC000024 — Antibody Secreting Cell + +Proposed skos:exactMatch to CL:0000946 (antibody secreting cell). + +Lexical match; marker scoring found nothing useful (mouse B220-nomenclature terms scored highest instead). + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD19:positive; Required phenotypic markers: (CD27:positive OR CD27:high); Required phenotypic markers: CD38:high; Ideal phenotypic markers: (CD20:low OR CD20:negative). + + +## SOULCAP:SC000025 — Plasmablast + +Proposed skos:exactMatch to CL:0000980 (plasmablast). + +Lexical match; marker scoring found nothing useful. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required phenotypic markers: CD19:positive [inferred]; Required phenotypic markers: (CD27:positive OR CD27:high) [direct]; Required phenotypic markers: CD38:high [direct]; Required phenotypic markers: CD138:negative [direct]; Ideal phenotypic markers: (CD20:low OR CD20:negative) [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive. + +Untested cl markers: CD27L; CD3E. + + +## SOULCAP:SC000026 — Plasma Cell + +Proposed skos:exactMatch to CL:0000786 (plasma cell). + +Lexical match; marker scoring found nothing useful. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD138:positive [direct]; Ideal phenotypic markers: CD20:negative [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD19:positive; Required phenotypic markers: (CD27:positive OR CD27:high); Required phenotypic markers: CD38:high. + + +## SOULCAP:SC000028 — Transitonal B cell 1 and 2 + +Proposed skos:broadMatch to CL:0000818 (transitional stage B cell). + +SOULCAP combines T1+T2 into one gate; CL keeps CL:0000958 (T1) and CL:0000959 (T2) separate under this parent term. Sheet's Full Name has a typo ('Transitonal'). + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required phenotypic markers: (CD20:positive OR CD19:positive) [direct]; Required phenotypic markers: (CD38:high OR CD10:high) [direct]; Required phenotypic markers: CD24:high [direct]; Ideal phenotypic markers: CD20:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD27:negative. + +Untested cl markers: CD24A; CD3E. + + +## SOULCAP:SC000029 — Mature B cell + +Proposed skos:exactMatch to CL:0000785 (mature B cell). + +Lexical match; marker scoring found nothing useful. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD27:negative; Required phenotypic markers: (CD38:low OR CD38:negative); Ideal phenotypic markers: CD20:positive. + +Untested cl markers: CD3E. + + +## SOULCAP:SC000030 — Transitional B cell 3 + +Proposed skos:exactMatch to CL:0000960 (T3 B cell). + +Lexical match; marker scoring found nothing useful. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD24:positive [inferred]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD27:negative; Required phenotypic markers: (CD38:low OR CD38:negative OR CD10:low); Required phenotypic markers: IGD:positive. + +Untested cl markers: CD21; CD23; CD23A; CD24A; CD3E; CD62; CD62L. + + +## SOULCAP:SC000031 — Naive B cell + +Proposed skos:exactMatch to CL:0000788 (naive B cell). + +Lexical match; marker scoring found nothing useful. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required phenotypic markers: (CD20:positive OR CD19:positive) [direct]; Required phenotypic markers: CD27:negative [direct]; Ideal phenotypic markers: CD20:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative OR CD10:negative); Required phenotypic markers: CD24:negative; Required phenotypic markers: IGD:positive. + +Untested cl markers: CD27L; CD3E. + + +## SOULCAP:SC000032 — Double Negative B cells + +Proposed skos:exactMatch to CL:0000981 (double negative memory B cell). + +OAK-verified; batch lexical search had wrongly picked CL:0002103, an IgG-positive-specific child term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:negative [direct]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative OR CD10:negative); Required phenotypic markers: CD24:negative; Required phenotypic markers: IGD:negative. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000033 — Double Negative B cell 1 + +Proposed skos:broadMatch to CL:0000981 (double negative memory B cell). + +No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:negative [direct]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative OR CD10:negative); Required phenotypic markers: CD24:positive; Required phenotypic markers: IGD:negative; Required phenotypic markers: CD21:positive; Required phenotypic markers: CD11C:negative; Required phenotypic markers: CD185:positive; Required phenotypic markers: IGE:negative. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000034 — Double Negative B cell 2 + +Proposed skos:broadMatch to CL:0000981 (double negative memory B cell). + +No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:negative [direct]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative OR CD10:negative); Required phenotypic markers: CD24:negative; Required phenotypic markers: IGD:negative; Required phenotypic markers: CD21:negative; Required phenotypic markers: CD11C:positive; Required phenotypic markers: CD185:negative. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000035 — Double Negative B cell 3 + +Proposed skos:broadMatch to CL:0000981 (double negative memory B cell). + +No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:negative [direct]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative OR CD10:negative); Required phenotypic markers: CD24:positive; Required phenotypic markers: IGD:negative; Required phenotypic markers: CD21:negative; Required phenotypic markers: CD11C:negative; Required phenotypic markers: CD185:negative. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000036 — Double Negative B cell 4 + +Proposed skos:broadMatch to CL:0000981 (double negative memory B cell). + +No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:negative [direct]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative OR CD10:negative); Required phenotypic markers: CD24:positive; Required phenotypic markers: IGD:negative; Required phenotypic markers: CD21:positive; Required phenotypic markers: CD11C:negative; Required phenotypic markers: CD185:positive; Required phenotypic markers: IGE:positive. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000037 — Memory B cell + +Proposed skos:exactMatch to CL:0000787 (memory B cell). + +Lexical match; marker scoring found nothing useful. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required phenotypic markers: (CD20:positive OR CD19:positive) [direct]; Ideal phenotypic markers: CD20:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD27:positive; Required phenotypic markers: (CD38:low OR CD38:negative). + +Untested cl markers: CD138; CD3E. + + +## SOULCAP:SC000039 — Unswitched Memory B cell + +Proposed skos:exactMatch to CL:0000970 (unswitched memory B cell). + +Lexical match, OAK-confirmed. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:positive [direct]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative); Required phenotypic markers: IGD:positive; Required phenotypic markers: IGM:positive. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000040 — IgM-only Memory B cell + +Proposed skos:exactMatch to CL:0000971 (IgM memory B cell). + +Lexical match, OAK-confirmed. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD27:positive; Required phenotypic markers: (CD38:low OR CD38:negative); Required phenotypic markers: IGD:negative; Required phenotypic markers: IGM:positive. + +Untested cl markers: CD138; CD3E. + + +## SOULCAP:SC000041 — Switched Memory B cell + +Proposed skos:exactMatch to CL:0000972 (class switched memory B cell). + +OAK-verified; batch lexical search had wrongly picked CL:0002117, an IgG-negative-specific child term (too narrow for the general Switched parent, which shouldn't exclude any Ig class). + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:positive [direct]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative); Required phenotypic markers: IGD:negative; Required phenotypic markers: IGM:negative. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000042 — IgA-Class Switched B cell + +Proposed skos:exactMatch to CL:0000973 (IgA memory B cell). + +Lexical match, OAK-confirmed. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:positive [inferred]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative); Required phenotypic markers: IGD:negative; Required phenotypic markers: IGM:negative; Required phenotypic markers: IGA:positive; Required phenotypic markers: IGG:negative; Required phenotypic markers: IGE:negative. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000043 — IgG-Class Switched B cell + +Proposed skos:exactMatch to CL:0000979 (IgG memory B cell). + +OAK-verified; batch lexical search had wrongly picked CL:0002117 'IgG-negative class switched memory B cell' — the opposite polarity of what this row defines. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:positive [inferred]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative); Required phenotypic markers: IGD:negative; Required phenotypic markers: IGM:negative; Required phenotypic markers: IGA:negative; Required phenotypic markers: IGG:positive; Required phenotypic markers: IGE:negative. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000044 — IgE-Class Switched B cell + +Proposed skos:exactMatch to CL:0000948 (IgE memory B cell). + +Lexical match, OAK-confirmed. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD3:negative [inferred]; Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:positive [inferred]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative); Required phenotypic markers: IGD:negative; Required phenotypic markers: IGM:negative; Required phenotypic markers: IGA:negative; Required phenotypic markers: IGG:negative; Required phenotypic markers: IGE:positive. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000045 — T lymphocyte + +Proposed skos:exactMatch to CL:0000084 (T cell). + +OAK-verified; marker scoring returned unrelated myeloid terms. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive. + + +## SOULCAP:SC000060 — alpha/beta T cell + +Proposed skos:exactMatch to CL:0000789 (alpha-beta T cell). + +OAK-verified; marker scoring returned unrelated myeloid terms. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative). + + +## SOULCAP:SC000061 — gamma/delta T cell + +Proposed skos:exactMatch to CL:0000798 (gamma-delta T cell). + +OAK-verified; marker scoring returned unrelated myeloid terms. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive). + + +## SOULCAP:SC000059 — Invariant Natural Killer T cell + +Proposed skos:exactMatch to CL:0000814 (mature NK T cell). + +OAK-verified. Same term flagged in repo issue #13 for a rename to 'iNKT cell' (filed upstream, awaiting review) — mapping is correct either way. + +Uncertain proposal: no. +Marker evidence: invalid_profile. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Errors: Required phenotypic markers: mixed '|' and space in a group. + + +## SOULCAP:SC000074 — Mucosal-associated Invariant T cell + +Proposed skos:exactMatch to CL:0000940 (mucosal-associated invariant T cell). + +Lexical match, OAK-confirmed. + +Uncertain proposal: no. +Marker evidence: invalid_profile. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Errors: Required phenotypic markers: mixed '|' and space in a group. + + +## SOULCAP:SC000066 — CD4+ alpha/beta T cell + +Proposed skos:exactMatch to CL:0000624 (CD4-positive, alpha-beta T cell). + +OAK-verified. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD4:positive [direct]; Required phenotypic markers: CD8:negative [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative). + + +## SOULCAP:SC000067 — CD8+ alpha/beta T cell + +Proposed skos:exactMatch to CL:0000625 (CD8-positive, alpha-beta T cell). + +OAK-verified. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD4:negative [direct]; Required phenotypic markers: CD8:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative). + +Untested cl markers: CD8A. + + +## SOULCAP:SC000073 — CD4-/CD8- gamma/delta T cell + +Proposed skos:exactMatch to CL:0000803 (CD4-negative, CD8-negative gamma-delta T cell). + +OAK-verified; double-negative is the classical gamma-delta T cell phenotype. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD4:negative [direct]; Required phenotypic markers: CD8:negative [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive). + +Untested cl markers: CD8A. + + +## SOULCAP:SC000062 — alpha/beta and gamma/delta CD4+ T cells + +Proposed skos:broadMatch to CL:0000624 (CD4-positive, alpha-beta T cell). + +CL has no combined alpha-beta+gamma-delta CD4+ term; alpha-beta dominates the CD4+ compartment. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD4:positive [direct]; Required phenotypic markers: CD8:negative [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive. + + +## SOULCAP:SC000063 — alpha/beta and gamma/delta CD8+ T cells + +Proposed skos:broadMatch to CL:0000625 (CD8-positive, alpha-beta T cell). + +Same reasoning as CD4+ T cell. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD4:negative [direct]; Required phenotypic markers: CD8:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive. + +Untested cl markers: CD8A. + + +## SOULCAP:SC000064 — alpha/beta and gamma/delta CD4+ and CD8+ T cells + +Proposed skos:broadMatch to CL:0000789 (alpha-beta T cell). + +No CD4+CD8+ double-positive CL term found at all; peripheral DP T cells are themselves biologically unusual. + +Uncertain proposal: yes. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000065 — alpha/beta and gamma/delta CD4- and CD8- T cells + +Proposed skos:broadMatch to CL:0000084 (T cell). + +No peripheral (non-thymic) double-negative term spanning both TCR types; only a thymocyte-stage term exists (wrong tissue). + +Uncertain proposal: yes. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: CD4:negative; Required phenotypic markers: CD8:negative. + + +## SOULCAP:SC000068 — CD4+ and CD8+ alpha/beta T cell + +Proposed skos:broadMatch to CL:0000789 (alpha-beta T cell). + +No CD4+CD8+ double-positive alpha-beta term found. + +Uncertain proposal: yes. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative); Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000069 — CD4- and CD8- alpha/beta T cell + +Proposed skos:broadMatch to CL:0000789 (alpha-beta T cell). + +Only CL:0002489 'double negative thymocyte' found — wrong tissue/maturity stage for a blood/PBMC panel. + +Uncertain proposal: yes. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative); Required phenotypic markers: CD4:negative; Required phenotypic markers: CD8:negative. + + +## SOULCAP:SC000070 — CD4+ gamma/delta T cell + +Proposed skos:broadMatch to CL:0000798 (gamma-delta T cell). + +CD4+ gamma-delta T cells are atypical/rare; no CL term found. + +Uncertain proposal: yes. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive); Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:negative. + + +## SOULCAP:SC000071 — CD8+ gamma/delta T cell + +Proposed skos:broadMatch to CL:0000798 (gamma-delta T cell). + +No CD8+-specific gamma-delta CL term found. + +Uncertain proposal: yes. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive); Required phenotypic markers: CD4:negative; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000072 — CD4+/CD8+ gamma/delta T cell + +Proposed skos:broadMatch to CL:0000798 (gamma-delta T cell). + +No CD4+CD8+ double-positive gamma-delta term found. + +Uncertain proposal: yes. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive); Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000046 — CD56+ T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive. + + +## SOULCAP:SC000047 — CD56+ CD4 T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000048 — CD56+ CD8 T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: CD4:negative; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000049 — CD56+ alpha/beta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative). + + +## SOULCAP:SC000050 — CD56+ CD4+ alpha/beta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative); Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:negative. + + +## SOULCAP:SC000051 — CD56+ CD8+ alpha/beta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative); Required phenotypic markers: CD4:negative; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000052 — CD56+ CD4+/CD8+ alpha/beta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative); Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000053 — CD56+ CD4-/CD8- alpha/beta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative); Required phenotypic markers: CD4:negative; Required phenotypic markers: CD8:negative. + + +## SOULCAP:SC000054 — CD56+ gamma/delta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive). + + +## SOULCAP:SC000055 — CD56+ CD4+ gamma/delta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive); Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:negative. + + +## SOULCAP:SC000056 — CD56+ CD8+ gamma/delta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive); Required phenotypic markers: CD4:negative; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000057 — CD56+ CD4+/CD8+ gamma/delta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive); Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000058 — CD56+ CD8-/CD8- gamma/delta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive); Required phenotypic markers: CD4:negative; Required phenotypic markers: CD8:negative. + + +## SOULCAP:SC000087 — Naive alpha/beta and gamma/delta T cell + +Proposed skos:exactMatch to CL:0000898 (naive T cell). + +OAK-verified; the one generic (non-CD4/CD8-split) differentiation-state term that does exist in CL. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative. + +Untested cl markers: CD127; CD197; CD44; CD45; CD45RA; CD62; CD62L; CDW127; CDW197; CDW44. + + +## SOULCAP:SC000089 — CD4+ naive alpha/beta T cell + +Proposed skos:exactMatch to CL:0000895 (naive thymus-derived CD4-positive, alpha-beta T cell). + +OAK-verified. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative. + +Untested cl markers: CD127; CD197; CD25; CD4; CD44; CD45; CD45RA; CD62; CD62L; CD8; CDW127; CDW197; CDW44. + + +## SOULCAP:SC000092 — CD8+ naive alpha/beta T cell + +Proposed skos:exactMatch to CL:0000900 (naive thymus-derived CD8-positive, alpha-beta T cell). + +OAK-verified. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative. + +Untested cl markers: CD127; CD197; CD25; CD4; CD44; CD45; CD45RA; CD62; CD62L; CD8; CD8A; CDW127; CDW197; CDW44. + + +## SOULCAP:SC000082 — CD4+ central memory alpha/beta T cell + +Proposed skos:exactMatch to CL:0000904 (central memory CD4-positive, alpha-beta T cell). + +OAK-verified. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative. + +Untested cl markers: CD127; CD197; CD25; CD4; CD45; CD45RA; CD45RO; CD8; CDW127; CDW197. + + +## SOULCAP:SC000085 — CD8+ central memory alpha/beta T cell + +Proposed skos:exactMatch to CL:0000907 (central memory CD8-positive, alpha-beta T cell). + +OAK-verified. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative. + +Untested cl markers: CD127; CD197; CD25; CD4; CD45; CD45RA; CD45RO; CD8; CD8A; CDW127; CDW197. + + +## SOULCAP:SC000096 — CD4+ effector memory alpha/beta T cell + +Proposed skos:exactMatch to CL:0000905 (effector memory CD4-positive, alpha-beta T cell). + +OAK-verified. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative. + +Untested cl markers: CD127; CD197; CD25; CD4; CD45; CD45RA; CD45RO; CD8; CDW127; CDW197. + + +## SOULCAP:SC000099 — CD8+ effector memory alpha/beta T cell + +Proposed skos:exactMatch to CL:0000913 (effector memory CD8-positive, alpha-beta T cell). + +OAK-verified. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative. + +Untested cl markers: CD127; CD197; CD25; CD4; CD45; CD45RA; CD45RO; CD8; CD8A; CDW127; CDW197. + + +## SOULCAP:SC000103 — CD4+ CD45RA+ effector memory alpha/beta T cell + +Proposed skos:exactMatch to CL:4030002 (effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated). + +OAK-verified. No CD8+-specific counterpart with this 'terminally differentiated' qualifier was found — see gaps.tsv. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative. + diff --git a/reports/candidate_cl_mappings.sssom.provenance.json b/reports/candidate_cl_mappings.sssom.provenance.json new file mode 100644 index 0000000..17f3a29 --- /dev/null +++ b/reports/candidate_cl_mappings.sssom.provenance.json @@ -0,0 +1,6 @@ +{ + "data\\marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44", + "mappings\\curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e", + "mappings\\soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8", + "reports\\cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c" +} diff --git a/reports/candidate_cl_mappings.sssom.tsv b/reports/candidate_cl_mappings.sssom.tsv index 23356a8..a8b9e39 100644 --- a/reports/candidate_cl_mappings.sssom.tsv +++ b/reports/candidate_cl_mappings.sssom.tsv @@ -4,85 +4,85 @@ # semapv: https://w3id.org/semapv/vocab/ # skos: http://www.w3.org/2004/02/skos/core# # license: https://creativecommons.org/licenses/by/4.0/ -# mapping_set_id: https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/reports/candidate_cl_mappings.sssom.tsv -subject_id subject_label predicate_id object_id object_label mapping_justification confidence mapping_cardinality comment mapping_tool -SOULCAP:NK Natural Killer Cell skos:exactMatch CL:0000623 natural killer cell semapv:ManualMappingCuration 0.55 1:1 CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the defining positive CD56 marker is absent — a documented CL gap (cl_term_issues.md), not confirmed here. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:NK2 Natural Killer Cell 2 skos:exactMatch CL:0000938 CD16-negative, CD56-bright natural killer cell, human semapv:ManualMappingCuration 0.9 1:1 Supported by directly-asserted CL marker axiom(s). soulcap-match + soulcap-cl-matching skill -SOULCAP:CTNK Cytotoxic Natural Killer Cell skos:exactMatch CL:0000939 CD16-positive, CD56-dim natural killer cell, human semapv:ManualMappingCuration 0.9 n:1 Supported by directly-asserted CL marker axiom(s). soulcap-match + soulcap-cl-matching skill -SOULCAP:NK1 Natural Killer Cell 1 skos:broadMatch CL:0000939 CD16-positive, CD56-dim natural killer cell, human semapv:ManualMappingCuration 0.75 n:1 CL does not distinguish CD57 status within this subtype. Supported by directly-asserted CL marker axiom(s). soulcap-match + soulcap-cl-matching skill -SOULCAP:NK3 Natural Killer Cell 3 skos:broadMatch CL:0000939 CD16-positive, CD56-dim natural killer cell, human semapv:ManualMappingCuration 0.75 n:1 CL does not distinguish CD57 status within this subtype. Supported by directly-asserted CL marker axiom(s). soulcap-match + soulcap-cl-matching skill -SOULCAP:ILCp Innate Lymphoid Cell Progenitor skos:broadMatch CL:0001074 CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human semapv:ManualMappingCuration 0.3 1:1 SOULCAP profile does not test CD34; CL:0001073 (CD34-negative) and CL:0001082 (immature innate lymphoid cell) are equally marker-consistent alternatives, not ruled out. Supported by directly-asserted CL marker axiom(s). soulcap-match + soulcap-cl-matching skill -SOULCAP:ILC Innate Lymphoid Cell skos:exactMatch CL:0001065 innate lymphoid cell semapv:ManualMappingCuration 0.55 1:1 Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, not CL-marker-supported. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:ILC1 Innate Lymphoid Cell 1 skos:exactMatch CL:0001067 group 1 innate lymphoid cell semapv:ManualMappingCuration 0.55 1:1 Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only. No human-specific CL term exists for group 1 (unlike group 2/3); filed as CL gap, repo issue #14. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:ILC2 Innate Lymphoid Cell 2 skos:exactMatch CL:0001081 group 2 innate lymphoid cell, human semapv:ManualMappingCuration 0.55 1:1 Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had picked the wrong-species term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:ILC3 Innate Lymphoid Cell 3 skos:exactMatch CL:0001078 group 3 innate lymphoid cell, human semapv:ManualMappingCuration 0.55 1:1 Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had over-specified to an NKp44+ subtype. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:cDC Conventional Dendritic Cell skos:exactMatch CL:0000990 conventional dendritic cell semapv:ManualMappingCuration 0.55 1:1 Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:cDC1 Conventional Dendritic Cell 1 skos:exactMatch CL:0002394 CD141-positive myeloid dendritic cell semapv:ManualMappingCuration 0.55 1:1 Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had wrongly assigned cDC1 the same term as cDC2. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:cDC2 Conventional Dendritic Cell 2 skos:exactMatch CL:0002399 CD1c-positive myeloid dendritic cell semapv:ManualMappingCuration 0.55 1:1 Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed correct by cross-check against cDC1. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:pDC Plasmacytoid Dendritic Cell skos:exactMatch CL:0001058 plasmacytoid dendritic cell, human semapv:ManualMappingCuration 0.55 1:1 Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only. Sheet's Full Name reads 'Peripheral Dendritic Cell' (likely a typo for 'Plasmacytoid'); not yet corrected at source. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:Basophil_(PBMC) Basophil skos:exactMatch CL:0000043 mature basophil semapv:ManualMappingCuration 0.6 n:1 Supported only by inferred (not directly asserted) CL marker axioms — treat with lower confidence than a directly-asserted match. soulcap-match + soulcap-cl-matching skill -SOULCAP:Basophil_(WB) Basophil skos:exactMatch CL:0000043 mature basophil semapv:ManualMappingCuration 0.6 n:1 Supported only by inferred (not directly asserted) CL marker axioms — treat with lower confidence than a directly-asserted match. soulcap-match + soulcap-cl-matching skill -SOULCAP:Mono Monocyte skos:exactMatch CL:0000576 monocyte semapv:ManualMappingCuration 0.55 1:1 OAK-verified exact label match (OLS4 was timing out); CL:0000576 has no marker axioms recorded at all. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CMo Classical Monocyte skos:exactMatch CL:0000860 classical monocyte semapv:ManualMappingCuration 0.55 1:1 OAK-verified exact label match. CL:0000860 asserts only CCR2 (CD192) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:NCMo Non-classical Monocyte skos:exactMatch CL:0000875 non-classical monocyte semapv:ManualMappingCuration 0.55 1:1 OAK-verified exact label match. CL:0000875 asserts only CX3CR1 and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:IntMo Intermediate Monocyte skos:exactMatch CL:0002393 intermediate monocyte semapv:ManualMappingCuration 0.55 1:1 OAK-verified exact label match. CL:0002393 asserts only CCR2 (CD192, negative) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:Neutrophil Neutrophil skos:exactMatch CL:0000775 neutrophil semapv:ManualMappingCuration 0.9 1:1 Supported by directly-asserted CL marker axiom(s). soulcap-match + soulcap-cl-matching skill -SOULCAP:Eosinophil Eosinophil skos:exactMatch CL:0000771 eosinophil semapv:ManualMappingCuration 0.9 1:1 CD193 (CCR3) positive is directly asserted (not inferred) on CL:0000771, precisely matching SOULCAP's defining CD193+ requirement — one of the stronger marker-confirmed matches in this set. Supported by directly-asserted CL marker axiom(s). soulcap-match + soulcap-cl-matching skill -SOULCAP:B_cell B cell skos:exactMatch CL:0000236 B cell semapv:ManualMappingCuration 0.55 1:1 OLS4 REST search returned zero hits for this exact query; found instead via OAK. CL:0000236 has no marker axioms recorded. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:ASC Antibody Secreting Cell skos:exactMatch CL:0000946 antibody secreting cell semapv:ManualMappingCuration 0.55 1:1 Lexical match; marker scoring found nothing useful (mouse B220-nomenclature terms scored highest instead). CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:PB Plasmablast skos:exactMatch CL:0000980 plasmablast semapv:ManualMappingCuration 0.55 1:1 Lexical match; marker scoring found nothing useful. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:PC Plasma Cell skos:exactMatch CL:0000786 plasma cell semapv:ManualMappingCuration 0.55 1:1 Lexical match; marker scoring found nothing useful. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:T1/T2_B Transitonal B cell 1 and 2 skos:broadMatch CL:0000818 transitional stage B cell semapv:ManualMappingCuration 0.4 1:1 SOULCAP combines T1+T2 into one gate; CL keeps CL:0000958 (T1) and CL:0000959 (T2) separate under this parent term. Sheet's Full Name has a typo ('Transitonal'). CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:Mature_B Mature B cell skos:exactMatch CL:0000785 mature B cell semapv:ManualMappingCuration 0.55 1:1 Lexical match; marker scoring found nothing useful. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:T3 Transitional B cell 3 skos:exactMatch CL:0000960 T3 B cell semapv:ManualMappingCuration 0.55 1:1 Lexical match; marker scoring found nothing useful. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:Naive Naive B cell skos:exactMatch CL:0000788 naive B cell semapv:ManualMappingCuration 0.55 1:1 Lexical match; marker scoring found nothing useful. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:BDN Double Negative B cells skos:exactMatch CL:0000981 double negative memory B cell semapv:ManualMappingCuration 0.55 n:1 OAK-verified; batch lexical search had wrongly picked CL:0002103, an IgG-positive-specific child term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:BDN1 Double Negative B cell 1 skos:broadMatch CL:0000981 double negative memory B cell semapv:ManualMappingCuration 0.4 n:1 No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:BDN2 Double Negative B cell 2 skos:broadMatch CL:0000981 double negative memory B cell semapv:ManualMappingCuration 0.4 n:1 No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:BDN3 Double Negative B cell 3 skos:broadMatch CL:0000981 double negative memory B cell semapv:ManualMappingCuration 0.4 n:1 No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:BDN4 Double Negative B cell 4 skos:broadMatch CL:0000981 double negative memory B cell semapv:ManualMappingCuration 0.4 n:1 No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:Bmem Memory B cell skos:exactMatch CL:0000787 memory B cell semapv:ManualMappingCuration 0.55 1:1 Lexical match; marker scoring found nothing useful. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:Unswitched Unswitched Memory B cell skos:exactMatch CL:0000970 unswitched memory B cell semapv:ManualMappingCuration 0.55 1:1 Lexical match, OAK-confirmed. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:IgM_only IgM-only Memory B cell skos:exactMatch CL:0000971 IgM memory B cell semapv:ManualMappingCuration 0.55 1:1 Lexical match, OAK-confirmed. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:Switched Switched Memory B cell skos:exactMatch CL:0000972 class switched memory B cell semapv:ManualMappingCuration 0.55 1:1 OAK-verified; batch lexical search had wrongly picked CL:0002117, an IgG-negative-specific child term (too narrow for the general Switched parent, which shouldn't exclude any Ig class). CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:IgA IgA-Class Switched B cell skos:exactMatch CL:0000973 IgA memory B cell semapv:ManualMappingCuration 0.55 1:1 Lexical match, OAK-confirmed. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:IgG IgG-Class Switched B cell skos:exactMatch CL:0000979 IgG memory B cell semapv:ManualMappingCuration 0.55 1:1 OAK-verified; batch lexical search had wrongly picked CL:0002117 'IgG-negative class switched memory B cell' — the opposite polarity of what this row defines. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:IgE IgE-Class Switched B cell skos:exactMatch CL:0000948 IgE memory B cell semapv:ManualMappingCuration 0.55 1:1 Lexical match, OAK-confirmed. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:T_cell T lymphocyte skos:exactMatch CL:0000084 T cell semapv:ManualMappingCuration 0.55 n:1 OAK-verified; marker scoring returned unrelated myeloid terms. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:TCRab alpha/beta T cell skos:exactMatch CL:0000789 alpha-beta T cell semapv:ManualMappingCuration 0.55 n:1 OAK-verified; marker scoring returned unrelated myeloid terms. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:TCRgd gamma/delta T cell skos:exactMatch CL:0000798 gamma-delta T cell semapv:ManualMappingCuration 0.55 n:1 OAK-verified; marker scoring returned unrelated myeloid terms. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:iNKT Invariant Natural Killer T cell skos:exactMatch CL:0000814 mature NK T cell semapv:ManualMappingCuration 0.55 1:1 OAK-verified. Same term flagged in repo issue #13 for a rename to 'iNKT cell' (filed upstream, awaiting review) — mapping is correct either way. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:MAIT Mucosal-associated Invariant T cell skos:exactMatch CL:0000940 mucosal-associated invariant T cell semapv:ManualMappingCuration 0.55 1:1 Lexical match, OAK-confirmed. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD4+_TCRab_T_cell CD4+ alpha/beta T cell skos:exactMatch CL:0000624 CD4-positive, alpha-beta T cell semapv:ManualMappingCuration 0.55 n:1 OAK-verified. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD8+_TCRab_T_cell CD8+ alpha/beta T cell skos:exactMatch CL:0000625 CD8-positive, alpha-beta T cell semapv:ManualMappingCuration 0.55 n:1 OAK-verified. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD4-/CD8-_TCRgd CD4-/CD8- gamma/delta T cell skos:exactMatch CL:0000803 CD4-negative, CD8-negative gamma-delta T cell semapv:ManualMappingCuration 0.55 1:1 OAK-verified; double-negative is the classical gamma-delta T cell phenotype. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD4+_T_cell alpha/beta and gamma/delta CD4+ T cells skos:broadMatch CL:0000624 CD4-positive, alpha-beta T cell semapv:ManualMappingCuration 0.4 n:1 CL has no combined alpha-beta+gamma-delta CD4+ term; alpha-beta dominates the CD4+ compartment. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD8+_T_cell alpha/beta and gamma/delta CD8+ T cells skos:broadMatch CL:0000625 CD8-positive, alpha-beta T cell semapv:ManualMappingCuration 0.4 n:1 Same reasoning as CD4+ T cell. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD4+/CD8+_T_cell alpha/beta and gamma/delta CD4+ and CD8+ T cells skos:broadMatch CL:0000789 alpha-beta T cell semapv:ManualMappingCuration 0.3 n:1 No CD4+CD8+ double-positive CL term found at all; peripheral DP T cells are themselves biologically unusual. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD4-/CD8-_T_cell alpha/beta and gamma/delta CD4- and CD8- T cells skos:broadMatch CL:0000084 T cell semapv:ManualMappingCuration 0.3 n:1 No peripheral (non-thymic) double-negative term spanning both TCR types; only a thymocyte-stage term exists (wrong tissue). CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD4+/CD8+_TCRab_T_cell CD4+ and CD8+ alpha/beta T cell skos:broadMatch CL:0000789 alpha-beta T cell semapv:ManualMappingCuration 0.3 n:1 No CD4+CD8+ double-positive alpha-beta term found. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD4-/CD8-_TCRab_T_cell CD4- and CD8- alpha/beta T cell skos:broadMatch CL:0000789 alpha-beta T cell semapv:ManualMappingCuration 0.3 n:1 Only CL:0002489 'double negative thymocyte' found — wrong tissue/maturity stage for a blood/PBMC panel. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD4+_TCRgd_T_cell CD4+ gamma/delta T cell skos:broadMatch CL:0000798 gamma-delta T cell semapv:ManualMappingCuration 0.3 n:1 CD4+ gamma-delta T cells are atypical/rare; no CL term found. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD8+_TCRgd_T_cell CD8+ gamma/delta T cell skos:broadMatch CL:0000798 gamma-delta T cell semapv:ManualMappingCuration 0.3 n:1 No CD8+-specific gamma-delta CL term found. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD4+/CD8+_TCRgd CD4+/CD8+ gamma/delta T cell skos:broadMatch CL:0000798 gamma-delta T cell semapv:ManualMappingCuration 0.3 n:1 No CD4+CD8+ double-positive gamma-delta term found. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD56+_T_cell CD56+ T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration 0.4 n:1 Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD56+_CD4_T_cell CD56+ CD4 T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration 0.4 n:1 Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD56+_CD8_T_cell CD56+ CD8 T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration 0.4 n:1 Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD56+_TCRab CD56+ alpha/beta T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration 0.4 n:1 Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD56+_CD4+_TCRab CD56+ CD4+ alpha/beta T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration 0.4 n:1 Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD56+_CD8+_TCRab CD56+ CD8+ alpha/beta T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration 0.4 n:1 Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD56+_CD4+/CD8+_TCRab CD56+ CD4+/CD8+ alpha/beta T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration 0.4 n:1 Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD56+_CD4-/CD8-_TCRab CD56+ CD4-/CD8- alpha/beta T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration 0.4 n:1 Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD56+_TCRgd CD56+ gamma/delta T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration 0.4 n:1 Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD56+_CD4+_TCRgd CD56+ CD4+ gamma/delta T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration 0.4 n:1 Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD56+_CD8+_TCRgd CD56+ CD8+ gamma/delta T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration 0.4 n:1 Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD56+_CD4+/CD8+_TCRgd CD56+ CD4+/CD8+ gamma/delta T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration 0.4 n:1 Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD56+_CD8-/CD8-_TCRgd CD56+ CD8-/CD8- gamma/delta T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration 0.4 n:1 Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:Tnaive Naive alpha/beta and gamma/delta T cell skos:exactMatch CL:0000898 naive T cell semapv:ManualMappingCuration 0.55 1:1 OAK-verified; the one generic (non-CD4/CD8-split) differentiation-state term that does exist in CL. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD4+_TCRab_Tnaive CD4+ naive alpha/beta T cell skos:exactMatch CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell semapv:ManualMappingCuration 0.55 1:1 OAK-verified. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD8+_TCRab_Tnaive CD8+ naive alpha/beta T cell skos:exactMatch CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell semapv:ManualMappingCuration 0.55 1:1 OAK-verified. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD4+_TCRab_Tcm CD4+ central memory alpha/beta T cell skos:exactMatch CL:0000904 central memory CD4-positive, alpha-beta T cell semapv:ManualMappingCuration 0.55 1:1 OAK-verified. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD8+_TCRab_Tcm CD8+ central memory alpha/beta T cell skos:exactMatch CL:0000907 central memory CD8-positive, alpha-beta T cell semapv:ManualMappingCuration 0.55 1:1 OAK-verified. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD4+_TCRab_Tem CD4+ effector memory alpha/beta T cell skos:exactMatch CL:0000905 effector memory CD4-positive, alpha-beta T cell semapv:ManualMappingCuration 0.55 1:1 OAK-verified. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD8+_TCRab_Tem CD8+ effector memory alpha/beta T cell skos:exactMatch CL:0000913 effector memory CD8-positive, alpha-beta T cell semapv:ManualMappingCuration 0.55 1:1 OAK-verified. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill -SOULCAP:CD4+_TCRab_Temra CD4+ CD45RA+ effector memory alpha/beta T cell skos:exactMatch CL:4030002 effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated semapv:ManualMappingCuration 0.55 1:1 OAK-verified. No CD8+-specific counterpart with this 'terminally differentiated' qualifier was found — see gaps.tsv. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers. soulcap-match + soulcap-cl-matching skill +# mapping_set_id: https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/blob/main/reports/candidate_cl_mappings.sssom.tsv +subject_id subject_label predicate_id object_id object_label mapping_justification mapping_cardinality comment mapping_tool +SOULCAP:SC000001 Natural Killer Cell skos:exactMatch CL:0000623 natural killer cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:NK"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""CD34:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD56:positive OR CD56:high)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD127:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD33:negative OR CD64:negative)"", ""column"": ""Ideal phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001889"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD19:negative"", ""column"": ""Required exclusion""}], ""profile_sha256"": ""77102d43f9abced8b3efd2e11ad6d91a492bf101ebdb061a1fd67aaaa275c58c"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD20"", ""CD3E""]}, ""note"": ""CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the defining positive CD56 marker is absent — a documented CL gap (cl_term_issues.md), not confirmed here."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000002 Natural Killer Cell 2 skos:exactMatch CL:0000938 CD16-negative, CD56-bright natural killer cell, human semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": """", ""legacy_subject_id"": ""SOULCAP:NK2"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""CD34:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD127:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD57:negative"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001889"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD19:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001024"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""CD56:high"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001483"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""(CD16:negative OR 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[{""clause"": ""CD34:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD127:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD57:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001889"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", 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[{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}, {""asserted"": ""True"", ""pr"": ""PR:P13591"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD56:positive"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000002065"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}, {""asserted"": ""True"", ""pr"": ""PR:P10721"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD117:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""03443463d5f102ae603565b7efde6d5b2de1f1f9c96016ecffdf886dd673995e"", 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nothing useful for this lineage; match is lexical/name-based only. No human-specific CL term exists for group 1 (unlike group 2/3); filed as CL gap, repo issue #14."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000009 Innate Lymphoid Cell 2 skos:exactMatch CL:0001081 group 2 innate lymphoid cell, human semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:ILC2"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD34:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD56:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD117:low OR CD117:negative)"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD19:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001869"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}, {""asserted"": ""True"", ""pr"": ""PR:P16871"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD127:positive"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:Q9Y5Y4"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD294:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""735345c450434e1f351231103ee6c81f7e0ba186fb9ce20230642a95b44c7a23"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD161"", ""CD25"", ""CD3E"", ""CDW127""]}, ""note"": ""Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had picked the wrong-species term."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000010 Innate Lymphoid Cell 3 skos:exactMatch CL:0001078 group 3 innate lymphoid cell, human semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:ILC3"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD34:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD56:low OR CD56:negative)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD117:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD294:negative"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD19:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001869"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}, {""asserted"": ""True"", ""pr"": ""PR:P16871"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD127:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""60bbd7b2b4b6bd74a25764ca423e651165008b0e6d59552268caf45876ec18f8"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD3E"", ""CDW127""]}, ""note"": ""Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had over-specified to an NKp44+ subtype."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000011 Conventional Dendritic Cell skos:exactMatch CL:0000990 conventional dendritic cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:cDC"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD123:not:high OR CD193:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD123:not:high OR CD303:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD14:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD33:high OR CD64:positive)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""HLA-DR:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD19:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD56:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001013"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""CD11C:high"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""334dd74448fec5173d10655dacd2b628cd103b346f3c6a7b37b061edc4ac9fa6"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD11"", ""CD20"", ""CD34"", ""CD3E""]}, ""note"": ""Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000012 Conventional Dendritic Cell 1 skos:exactMatch CL:0002394 CD141-positive myeloid dendritic cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:cDC1"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""CD14:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD33:high OR CD64:positive)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""HLA-DR:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD1C:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD172A:negative"", ""column"": ""Ideal phenotypic markers""}, {""clause"": ""FCER1A:negative"", ""column"": ""Ideal phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001865"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""(CD123:not:high OR CD193:negative)"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001865"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""(CD123:not:high OR CD303:negative)"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD19:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD56:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001013"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""CD11C:high"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000002105"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD141:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""26b00ac7a3eecc08344c5062dce97e2ccfd3a591c8a347be9f155b32e0128b25"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD11"", ""CD20"", ""CD34"", ""CD3E""]}, ""note"": ""Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had wrongly assigned cDC1 the same term as cDC2."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000013 Conventional Dendritic Cell 2 skos:exactMatch CL:0002399 CD1c-positive myeloid dendritic cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:cDC2"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""CD14:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD33:high OR CD64:positive)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""HLA-DR:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD141:low OR CD141:negative)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD172A:positive"", ""column"": ""Ideal phenotypic markers""}, {""clause"": ""(FCER1A:low OR FCER1A:negative)"", ""column"": ""Ideal phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001865"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""(CD123:not:high OR CD193:negative)"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001865"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""(CD123:not:high OR CD303:negative)"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD19:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD56:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001013"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""CD11C:high"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000002027"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD1C:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""3e6dc30f6e3ac086a6d06bc8b78c27895cba0f8f343c29a212dd2cb02d6dddee"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD11"", ""CD20"", ""CD34"", ""CD3E""]}, ""note"": ""Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed correct by cross-check against cDC1."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000014 Plasmacytoid Dendritic Cell skos:exactMatch CL:0001058 plasmacytoid dendritic cell, human semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:pDC"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD33:low OR CD33:positive OR CD123:high)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD193:negative OR FCER1A:negative OR CD303:positive)"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD56:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD19:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001889"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD14:negative"", ""column"": ""Ideal exclusion""}], ""profile_sha256"": ""90a3916e208c3f3f041f7567896fcd45d341337251da243d921d8127b8562d71"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD11"", ""CD11C"", ""CD20"", ""CD34"", ""CD3E""]}, ""note"": ""Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only. Sheet's Full Name reads 'Peripheral Dendritic Cell' (likely a typo for 'Plasmacytoid'); not yet corrected at source."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000015 Basophil skos:exactMatch CL:0000043 mature basophil semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": """", ""legacy_subject_id"": ""SOULCAP:Basophil_(PBMC)"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD14:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""FCER1A:positive"", ""column"": ""Ideal phenotypic markers""}, {""clause"": ""HLA-DR:negative"", ""column"": ""Ideal phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD56:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD19:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001865"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""(CD33:positive OR CD123:positive)"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001255"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""(CD193:positive OR FCER1A:positive OR HLA-DR:negative OR CD303:negative)"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""6ae772d0622c8988d15f047ef4570ab309a99edce893328ef9c815aec7e0c1b3"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD11"", ""CD11B"", ""CD154"", ""CD203C"", ""CD3E"", ""CD40"", ""CD40L"", ""CD40LG"", ""CD67"", ""CD8"", ""CD87"", ""CD8A""]}, ""note"": """", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000016 Basophil skos:exactMatch CL:0000043 mature basophil semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": """", ""legacy_subject_id"": ""SOULCAP:Basophil_(WB)"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD56:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD19:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001255"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""CD193:positive"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001865"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""CD123:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""b5e758e040d00ac23abae3ebc35dddae9abe67be32d404eb68c7345159c4132c"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD11"", ""CD11B"", ""CD154"", ""CD203C"", ""CD3E"", ""CD40"", ""CD40L"", ""CD40LG"", ""CD67"", ""CD8"", ""CD87"", ""CD8A""]}, ""note"": """", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000017 Monocyte skos:exactMatch CL:0000576 monocyte semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""sheet_confirmed"", ""legacy_subject_id"": ""SOULCAP:Mono"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": ""Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification."", ""errors"": [""Required exclusion: unexpected ')' in group""], ""gaps"": [], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""84c375696035c6d7c9de16751255259e8e834ac9287f201f13ed821a7bfdda5d"", ""review_status"": ""needs_review"", ""sheet_cl_id"": ""CL:0000576"", ""sheet_confirmation"": ""agrees"", ""sheet_notes"": """", ""status"": ""invalid_profile"", ""untested_cl_markers"": []}, ""note"": ""OAK-verified exact label match (OLS4 was timing out); CL:0000576 has no marker axioms recorded at all. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000018 Classical Monocyte skos:exactMatch CL:0000860 classical monocyte semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""sheet_confirmed"", ""legacy_subject_id"": ""SOULCAP:CMo"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": ""Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification."", ""errors"": [""Required exclusion: unexpected ')' in group""], ""gaps"": [], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""4c9436c977492d1ccea66ec05a22925897e6235162061f41dbf8e4e09ac940e3"", ""review_status"": ""needs_review"", ""sheet_cl_id"": ""CL:0000860"", ""sheet_confirmation"": ""agrees"", ""sheet_notes"": """", ""status"": ""invalid_profile"", ""untested_cl_markers"": []}, ""note"": ""OAK-verified exact label match. CL:0000860 asserts only CCR2 (CD192) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000019 Non-classical Monocyte skos:exactMatch CL:0000875 non-classical monocyte semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""sheet_confirmed"", ""legacy_subject_id"": ""SOULCAP:NCMo"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": ""Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification."", ""errors"": [""Required exclusion: unexpected ')' in group""], ""gaps"": [], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""2ccb34f2fc50e1126131986d487fe42c67bdcacc16330874b67750b017cbeab0"", ""review_status"": ""needs_review"", ""sheet_cl_id"": ""CL:0000875"", ""sheet_confirmation"": ""agrees"", ""sheet_notes"": """", ""status"": ""invalid_profile"", ""untested_cl_markers"": []}, ""note"": ""OAK-verified exact label match. CL:0000875 asserts only CX3CR1 and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000020 Intermediate Monocyte skos:exactMatch CL:0002393 intermediate monocyte semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""sheet_confirmed"", ""legacy_subject_id"": ""SOULCAP:IntMo"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": ""Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification."", ""errors"": [""Required exclusion: unexpected ')' in group""], ""gaps"": [], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""aa79f8b8798d9b79b35cd87edef7133ca5b824636f3f05d0dfe1b990d87d97c3"", ""review_status"": ""needs_review"", ""sheet_cl_id"": ""CL:0002393"", ""sheet_confirmation"": ""agrees"", ""sheet_notes"": """", ""status"": ""invalid_profile"", ""untested_cl_markers"": []}, ""note"": ""OAK-verified exact label match. CL:0002393 asserts only CCR2 (CD192, negative) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000021 Neutrophil skos:exactMatch CL:0000775 neutrophil semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": """", ""legacy_subject_id"": ""SOULCAP:Neutrophil"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:low OR CD14:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD193:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD16:high"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD64:negative OR CD33:positive)"", ""column"": ""Ideal phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD19:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001332"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""(CD15:high OR CD66B:positive)"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""6a7f385e7dd5e22ba96aeedb4aa46fb2e6ab411bc046567fac5d0aeb3ea7f587"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD11"", ""CD11B"", ""CD32"", ""CD3E"", ""CD43"", ""CD67"", ""CD8"", ""CD87"", ""CD8A""]}, ""note"": """", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000022 Eosinophil skos:exactMatch CL:0000771 eosinophil semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": """", ""legacy_subject_id"": ""SOULCAP:Eosinophil"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:low OR CD14:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD16:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD64:negative OR CD33:positive)"", ""column"": ""Ideal phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD19:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001332"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""(CD15:high OR CD66B:positive)"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001255"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD193:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""874205816800964db5c591f96652bdac9d28acef6907b20275b346c4e2cc3524"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD11"", ""CD11B"", ""CD191"", ""CD3E"", ""CD44"", ""CD67"", ""CD69"", ""CD8"", ""CD87"", ""CD8A"", ""CD9"", ""CDW44""]}, ""note"": ""CD193 (CCR3) positive is directly asserted (not inferred) on CL:0000771, precisely matching SOULCAP's defining CD193+ requirement — one of the stronger marker-confirmed matches in this set."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000023 B cell skos:exactMatch CL:0000236 B cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:B_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD20:positive OR CD19:positive)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD20:positive"", ""column"": ""Ideal phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""a0300906ff3acd98f58b8ebb9443d973b9710447d8ab4736aa111ae172b1df78"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""OLS4 REST search returned zero hits for this exact query; found instead via OAK. CL:0000236 has no marker axioms recorded."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000024 Antibody Secreting Cell skos:exactMatch CL:0000946 antibody secreting cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:ASC"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD19:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD27:positive OR CD27:high)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD38:high"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD20:low OR CD20:negative)"", ""column"": ""Ideal phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""a80b760b7494b5ccacbfeb5822368766f2b27665ee08fea9e8e1f9c303a76c79"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""Lexical match; marker scoring found nothing useful (mouse B220-nomenclature terms scored highest instead)."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000025 Plasmablast skos:exactMatch CL:0000980 plasmablast semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:PB"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD19:positive"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001963"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""(CD27:positive OR CD27:high)"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001408"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""CD38:high"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001935"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD138:negative"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001289"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""(CD20:low OR CD20:negative)"", ""column"": ""Ideal phenotypic markers""}], ""profile_sha256"": ""9863d8716862be947cf0fcd9d032cfb66cc1eb2aa59415522dc05bae36ac21f0"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD27L"", ""CD3E""]}, ""note"": ""Lexical match; marker scoring found nothing useful."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000026 Plasma Cell skos:exactMatch CL:0000786 plasma cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:PC"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD19:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD27:positive OR CD27:high)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD38:high"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001935"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD138:positive"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001289"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD20:negative"", ""column"": ""Ideal phenotypic markers""}], ""profile_sha256"": ""6e574209001a2ef071b4ee9221b9c2ac7c15348cb319df7b0eab050ed1ce33d4"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": []}, ""note"": ""Lexical match; marker scoring found nothing useful."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000028 Transitonal B cell 1 and 2 skos:broadMatch CL:0000818 transitional stage B cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:T1/T2_B"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD27:negative"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}, {""asserted"": ""True"", ""pr"": ""PR:000001289"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""(CD20:positive OR CD19:positive)"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001408"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""(CD38:high OR CD10:high)"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001932"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""CD24:high"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001289"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD20:positive"", ""column"": ""Ideal phenotypic markers""}], ""profile_sha256"": ""8e6bd76f1ceb75aafb12ce1c9f1f0a727efdb0db0ab1bd88934207cb56b8d23e"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD24A"", ""CD3E""]}, ""note"": ""SOULCAP combines T1+T2 into one gate; CL keeps CL:0000958 (T1) and CL:0000959 (T2) separate under this parent term. Sheet's Full Name has a typo ('Transitonal')."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000029 Mature B cell skos:exactMatch CL:0000785 mature B cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:Mature_B"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD27:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD38:low OR CD38:negative)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD20:positive"", ""column"": ""Ideal phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""(CD20:positive OR CD19:positive)"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""f14a51d3dd6628aedda0566ee1eb97b43ac20fa39c7dd4821b092eb3c2633498"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD3E""]}, ""note"": ""Lexical match; marker scoring found nothing useful."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000030 Transitional B cell 3 skos:exactMatch CL:0000960 T3 B cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:T3"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD27:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD38:low OR CD38:negative OR CD10:low)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""IGD:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}, {""asserted"": ""False"", ""pr"": ""PR:000001289"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""(CD20:positive OR CD19:positive)"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001932"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""CD24:positive"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001289"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD20:positive"", ""column"": ""Ideal phenotypic markers""}], ""profile_sha256"": ""c7d5b803f4b7ec0ad269623f0df9add64154c59779b0c4589c88e925db6b299c"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD21"", ""CD23"", ""CD23A"", ""CD24A"", ""CD3E"", ""CD62"", ""CD62L""]}, ""note"": ""Lexical match; marker scoring found nothing useful."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000031 Naive B cell skos:exactMatch CL:0000788 naive B cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:Naive"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD38:low OR CD38:negative OR CD10:negative)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD24:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""IGD:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}, {""asserted"": ""True"", ""pr"": ""PR:000001289"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""(CD20:positive OR CD19:positive)"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001963"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD27:negative"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001289"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD20:positive"", ""column"": ""Ideal phenotypic markers""}], ""profile_sha256"": ""7a7186381e27aa134e9a0468d8655160824ee7beb4a772b89d7bcc28f7a1f5bd"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD27L"", ""CD3E""]}, ""note"": ""Lexical match; marker scoring found nothing useful."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000032 Double Negative B cells skos:exactMatch CL:0000981 double negative memory B cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:BDN"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD38:low OR CD38:negative OR CD10:negative)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD24:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""IGD:negative"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}, {""asserted"": ""False"", ""pr"": ""PR:000001289"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""(CD20:positive OR CD19:positive)"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001963"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD27:negative"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001289"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD20:positive"", ""column"": ""Ideal phenotypic markers""}], ""profile_sha256"": ""7792df94242c9d36b2438d1ebfd2bc5b87024019c954e14608be41a8db701429"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD138"", ""CD27L"", ""CD3E""]}, ""note"": ""OAK-verified; batch lexical search had wrongly picked CL:0002103, an IgG-positive-specific child term."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000033 Double Negative B cell 1 skos:broadMatch CL:0000981 double negative memory B cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:BDN1"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD38:low OR CD38:negative OR CD10:negative)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD24:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""IGD:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD21:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD11C:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD185:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""IGE:negative"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}, {""asserted"": ""False"", ""pr"": ""PR:000001289"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""(CD20:positive OR CD19:positive)"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001963"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD27:negative"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001289"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD20:positive"", ""column"": ""Ideal phenotypic markers""}], ""profile_sha256"": ""c62eca580cc03fcf60bd587054596958b6948bc819ef0177a57a30bf92292390"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD138"", ""CD27L"", ""CD3E""]}, ""note"": ""No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000034 Double Negative B cell 2 skos:broadMatch CL:0000981 double negative memory B cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:BDN2"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, 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""status"": ""invalid_profile"", ""untested_cl_markers"": []}, ""note"": ""Lexical match, OAK-confirmed."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000066 CD4+ alpha/beta T cell skos:exactMatch CL:0000624 CD4-positive, alpha-beta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4+_TCRab_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": 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""PR:000001084"", ""relation"": ""BFO:0000051"", ""sense"": ""positive""}, {""asserted"": ""True"", ""pr"": ""PR:000025402"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}, {""asserted"": ""False"", ""pr"": ""PR:000025403"", ""relation"": ""BFO:0000051"", ""sense"": ""positive""}], ""clause"": ""CD8:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""5f511184f5b3fb48855d4ce1b1ed1777e79ca590353b921e6c8b66c7e79e2c17"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD8A""]}, ""note"": ""OAK-verified."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000073 CD4-/CD8- gamma/delta T cell skos:exactMatch CL:0000803 CD4-negative, CD8-negative gamma-delta T cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4-/CD8-_TCRgd"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(TCRAB:negative OR TCRGD:positive)"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [{""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001004"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD4:negative"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001084"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD8:negative"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""14aa1fa36c44a759182a64cb01ef6287e81a7962a7a4d9e069923f7cbb98e097"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD8A""]}, ""note"": ""OAK-verified; double-negative is the classical gamma-delta T cell phenotype."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000062 alpha/beta and gamma/delta CD4+ T cells skos:broadMatch CL:0000624 CD4-positive, alpha-beta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4+_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001004"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD4:positive"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000025402"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD8:negative"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""13a042caf6eaa90447c12e475dcdeb8c94ab2c34f1847f43c379e4aff9aa0435"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": []}, ""note"": ""CL has no combined alpha-beta+gamma-delta CD4+ term; alpha-beta dominates the CD4+ compartment."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000063 alpha/beta and gamma/delta CD8+ T cells skos:broadMatch CL:0000625 CD8-positive, alpha-beta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD8+_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001004"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD4:negative"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001084"", ""relation"": ""BFO:0000051"", ""sense"": ""positive""}, {""asserted"": ""True"", ""pr"": ""PR:000025402"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}, {""asserted"": ""False"", ""pr"": ""PR:000025403"", ""relation"": ""BFO:0000051"", ""sense"": ""positive""}], ""clause"": ""CD8:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""ee71924d4eb86799cfb40fcc026874f16ac52b1df80dfa5bc25d00c7ef1bf019"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD8A""]}, ""note"": ""Same reasoning as CD4+ T cell."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000064 alpha/beta and gamma/delta CD4+ and CD8+ T cells skos:broadMatch CL:0000789 alpha-beta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4+/CD8+_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD4:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""1a94242804d7d285d6e99a84f940c5920cba588e703bc9807bd7066e7a931273"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""No CD4+CD8+ double-positive CL term found at all; peripheral DP T cells are themselves biologically unusual."", ""status"": ""proposal"", ""uncertain"": true}" soulcap-sssom +SOULCAP:SC000065 alpha/beta and gamma/delta CD4- and CD8- T cells skos:broadMatch CL:0000084 T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4-/CD8-_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD4:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:negative"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""81d30ff7dab4278ec39ef4008e2e6cb051865ff423a24182495de6f6150eff6e"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""No peripheral (non-thymic) double-negative term spanning both TCR types; only a thymocyte-stage term exists (wrong tissue)."", ""status"": ""proposal"", ""uncertain"": true}" soulcap-sssom +SOULCAP:SC000068 CD4+ and CD8+ alpha/beta T cell skos:broadMatch CL:0000789 alpha-beta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4+/CD8+_TCRab_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(TCRAB:positive OR TCRGD:negative)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD4:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""03c69fac8ec012810b035a54f82237833b6f4299be38ce9139c761ca28f65d09"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""No CD4+CD8+ double-positive alpha-beta term found."", ""status"": ""proposal"", ""uncertain"": true}" soulcap-sssom +SOULCAP:SC000069 CD4- and CD8- alpha/beta T cell skos:broadMatch CL:0000789 alpha-beta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4-/CD8-_TCRab_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(TCRAB:positive OR TCRGD:negative)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD4:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:negative"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""147cd19bfa49697c170198087716cdfac8d82d0db6688150b183bb8e9c0340e5"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""Only CL:0002489 'double negative thymocyte' found — wrong tissue/maturity stage for a blood/PBMC panel."", ""status"": ""proposal"", ""uncertain"": true}" soulcap-sssom +SOULCAP:SC000070 CD4+ gamma/delta T cell skos:broadMatch CL:0000798 gamma-delta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4+_TCRgd_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(TCRAB:negative OR TCRGD:positive)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD4:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:negative"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""737860c20417038a9c5b8c687ec9c6acfc02afd4216730694025bb805010eae3"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""CD4+ gamma-delta T cells are atypical/rare; no CL term found."", ""status"": ""proposal"", ""uncertain"": true}" soulcap-sssom +SOULCAP:SC000071 CD8+ gamma/delta T cell skos:broadMatch CL:0000798 gamma-delta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD8+_TCRgd_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(TCRAB:negative OR TCRGD:positive)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD4:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""4bdfff88d621b6e25864f108e587296403ce0eb3f750a245df9360950cf11c2a"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""No CD8+-specific gamma-delta CL term found."", ""status"": ""proposal"", ""uncertain"": true}" soulcap-sssom +SOULCAP:SC000072 CD4+/CD8+ gamma/delta T cell skos:broadMatch CL:0000798 gamma-delta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4+/CD8+_TCRgd"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(TCRAB:negative OR TCRGD:positive)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD4:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""133eef6f9076e3eb898ce7cacf7933f562be6fbd2f02d633a0eabe79675295e5"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""No CD4+CD8+ double-positive gamma-delta term found."", ""status"": ""proposal"", ""uncertain"": true}" soulcap-sssom +SOULCAP:SC000046 CD56+ T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD56+_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""direct"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}, {""asserted"": ""True"", ""pr"": ""PR:P13591"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD56:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""63ee8683e94c984697c75d473a3e9d0405de2bafb176fbbb7535c16485178719"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": []}, ""note"": ""Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). 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CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000057 CD56+ CD4+/CD8+ gamma/delta T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD56+_CD4+/CD8+_TCRgd"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(TCRAB:negative OR TCRGD:positive)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD4:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""direct"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}, {""asserted"": ""True"", ""pr"": ""PR:P13591"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD56:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""38983c8b8783e6204c78e6008e38c21e4abaf13295e847719bf6ac9fa73c585f"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": []}, ""note"": ""Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000058 CD56+ CD8-/CD8- gamma/delta T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD56+_CD8-/CD8-_TCRgd"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(TCRAB:negative OR TCRGD:positive)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD4:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:negative"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""direct"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}, {""asserted"": ""True"", ""pr"": ""PR:P13591"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD56:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""51660216e5f35ba2abe0ff0944ef9899083a81d9233c1b018922ff8d00e6734a"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": []}, ""note"": ""Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000087 Naive alpha/beta and gamma/delta T cell skos:exactMatch CL:0000898 naive T cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:Tnaive"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": [""CD127"", ""CD197"", ""CD44"", ""CD45"", ""CD45RA"", ""CD62"", ""CD62L"", ""CDW127"", ""CDW197"", ""CDW44""]}, ""note"": ""OAK-verified; the one generic (non-CD4/CD8-split) differentiation-state term that does exist in CL."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000089 CD4+ naive alpha/beta T cell skos:exactMatch CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4+_TCRab_Tnaive"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": [""CD127"", ""CD197"", ""CD25"", ""CD4"", ""CD44"", ""CD45"", ""CD45RA"", ""CD62"", ""CD62L"", ""CD8"", ""CDW127"", ""CDW197"", ""CDW44""]}, ""note"": ""OAK-verified."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000092 CD8+ naive alpha/beta T cell skos:exactMatch CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD8+_TCRab_Tnaive"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": [""CD127"", ""CD197"", ""CD25"", ""CD4"", ""CD44"", ""CD45"", ""CD45RA"", ""CD62"", ""CD62L"", ""CD8"", ""CD8A"", ""CDW127"", ""CDW197"", ""CDW44""]}, ""note"": ""OAK-verified."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000082 CD4+ central memory alpha/beta T cell skos:exactMatch CL:0000904 central memory CD4-positive, alpha-beta T cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4+_TCRab_Tcm"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": [""CD127"", ""CD197"", ""CD25"", ""CD4"", ""CD45"", ""CD45RA"", ""CD45RO"", ""CD8"", ""CDW127"", ""CDW197""]}, ""note"": ""OAK-verified."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000085 CD8+ central memory alpha/beta T cell skos:exactMatch CL:0000907 central memory CD8-positive, alpha-beta T cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD8+_TCRab_Tcm"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": [""CD127"", ""CD197"", ""CD25"", ""CD4"", ""CD45"", ""CD45RA"", ""CD45RO"", ""CD8"", ""CD8A"", ""CDW127"", ""CDW197""]}, ""note"": ""OAK-verified."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000096 CD4+ effector memory alpha/beta T cell skos:exactMatch CL:0000905 effector memory CD4-positive, alpha-beta T cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4+_TCRab_Tem"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": [""CD127"", ""CD197"", ""CD25"", ""CD4"", ""CD45"", ""CD45RA"", ""CD45RO"", ""CD8"", ""CDW127"", ""CDW197""]}, ""note"": ""OAK-verified."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000099 CD8+ effector memory alpha/beta T cell skos:exactMatch CL:0000913 effector memory CD8-positive, alpha-beta T cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD8+_TCRab_Tem"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": [""CD127"", ""CD197"", ""CD25"", ""CD4"", ""CD45"", ""CD45RA"", ""CD45RO"", ""CD8"", ""CD8A"", ""CDW127"", ""CDW197""]}, ""note"": ""OAK-verified."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000103 CD4+ CD45RA+ effector memory alpha/beta T cell skos:exactMatch CL:4030002 effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4+_TCRab_Temra"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": null, ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""OAK-verified. No CD8+-specific counterpart with this 'terminally differentiated' qualifier was found — see gaps.tsv."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom diff --git a/reports/candidate_cl_mappings_batch.tsv b/reports/candidate_cl_mappings_batch.tsv index c29653c..33f00ec 100644 --- a/reports/candidate_cl_mappings_batch.tsv +++ b/reports/candidate_cl_mappings_batch.tsv @@ -1,380 +1,334 @@ -abbreviation full_name parent type_of_match existing_cl_id rank cl_id cl_label score hint_bonus matched contradictions gaps disqualified note -NK Natural Killer Cell Exact 1 CL:0002338 CD56-positive, CD161-positive immature natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+ CD45+, CD127-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-, CD33-/CD64- (no axiom on any alt.) no -NK Natural Killer Cell Exact 2 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 19 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (hi) CD34-, CD45+, CD127-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-, CD33-/CD64- (no axiom on any alt.) no -NK Natural Killer Cell Exact 3 CL:0000939 CD16-positive, CD56-dim natural killer cell, human 19 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (dim) CD34-, CD45+, CD127-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-, CD33-/CD64- (no axiom on any alt.) no -NK2 Natural Killer Cell 2 NK Surface Only (SO) 1 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (hi), CD16- CD34-, CD45+, CD127-, CD57-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123- no -NK2 Natural Killer Cell 2 NK Surface Only (SO) 2 CL:0002338 CD56-positive, CD161-positive immature natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+ CD45+, CD127-, CD16-, CD57-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123- no -NK2 Natural Killer Cell 2 NK Surface Only (SO) 3 CL:0002343 decidual natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (hi), CD16- CD34-, CD45+, CD127-, CD57-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123- no -CTNK Cytotoxice Natural Killer Cell NK SO and Cytokine 1 CL:0000939 CD16-positive, CD56-dim natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (dim), CD16+ CD34-, CD45+, CD127-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123- no -CTNK Cytotoxice Natural Killer Cell NK SO and Cytokine 2 CL:0002338 CD56-positive, CD161-positive immature natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+ CD45+, CD127-, CD16+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123- no -CTNK Cytotoxice Natural Killer Cell NK SO and Cytokine 3 CL:0001073 CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human 17 1 CD34-, CD3-, CD19-, CD56+ CD14-/CD33-/CD64- (no axiom on any alt.), CD45+, CD127-, CD16+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123- no -NK1 Natural Killer Cell 1 CTNK SO and TF 1 CL:0000939 CD16-positive, CD56-dim natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (dim), CD16+ CD34-, CD45+, CD127-, CD57-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123- no -NK1 Natural Killer Cell 1 CTNK SO and TF 2 CL:0002338 CD56-positive, CD161-positive immature natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+ CD45+, CD127-, CD16+, CD57-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123- no -NK1 Natural Killer Cell 1 CTNK SO and TF 3 CL:0001073 CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human 17 1 CD34-, CD3-, CD19-, CD56+ CD14-/CD33-/CD64- (no axiom on any alt.), CD45+, CD127-, CD16+, CD57-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123- no -NK3 Natural Killer Cell 3 CTNK TF ONLY 1 CL:0000939 CD16-positive, CD56-dim natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (dim), CD16+ CD34-, CD45+, CD127-, CD57+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123- no -NK3 Natural Killer Cell 3 CTNK TF ONLY 2 CL:0002338 CD56-positive, CD161-positive immature natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+ CD45+, CD127-, CD16+, CD57+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123- no -NK3 Natural Killer Cell 3 CTNK TF ONLY 3 CL:0001073 CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human 17 1 CD34-, CD3-, CD19-, CD56+ CD14-/CD33-/CD64- (no axiom on any alt.), CD45+, CD127-, CD16+, CD57+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123- no -ILCp Innate Lymphoid Cell Progenitor Surface Only (SO) 1 CL:0001073 CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human 15 3 CD3-, CD56+, CD117+ CD45+, CD127+, CD294- no -ILCp Innate Lymphoid Cell Progenitor Surface Only (SO) 2 CL:0001076 NKp46-positive innate lymphoid cell, human 15 3 CD3-, CD56+, CD117+ CD45+, CD127+, CD294- no -ILCp Innate Lymphoid Cell Progenitor Surface Only (SO) 3 CL:0001074 CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human 14 2 CD3-, CD56+, CD117+ CD45+, CD127+, CD294- no -ILC Innate Lymphoid Cell Surface Only (SO) 1 CL:0001057 myeloid dendritic cell, human 25 1 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD3-, CD11C+ (hi), CD123- CD45+, CD127+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.) no -ILC Innate Lymphoid Cell Surface Only (SO) 2 CL:0000989 CD11c-low plasmacytoid dendritic cell 23 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD11C+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD123- no -ILC Innate Lymphoid Cell Surface Only (SO) 3 CL:0000992 immature CD11c-low plasmacytoid dendritic cell 23 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD11C+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD123- no -ILC1 Innate Lymphoid Cell 1 ILC Surface Only (SO) 1 CL:0001057 myeloid dendritic cell, human 29 1 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD3-, CD56-, CD11C+ (hi), CD123- CD45+, CD127+, CD117-, CD294-, HLA-DR+, CD15-/CD66B- (no axiom on any alt.) no -ILC1 Innate Lymphoid Cell 1 ILC Surface Only (SO) 2 CL:0000989 CD11c-low plasmacytoid dendritic cell 27 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117-, CD294-, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD123- no -ILC1 Innate Lymphoid Cell 1 ILC Surface Only (SO) 3 CL:0000992 immature CD11c-low plasmacytoid dendritic cell 27 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117-, CD294-, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD123- no -ILC2 Innate Lymphoid Cell 2 ILC Surface Only (SO) 1 CL:0001057 myeloid dendritic cell, human 29 1 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD3-, CD56-, CD11C+ (hi), CD123- CD45+, CD127+, CD117-, CD294+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.) no -ILC2 Innate Lymphoid Cell 2 ILC Surface Only (SO) 2 CL:0000989 CD11c-low plasmacytoid dendritic cell 27 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117-, CD294+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD123- no -ILC2 Innate Lymphoid Cell 2 ILC Surface Only (SO) 3 CL:0000992 immature CD11c-low plasmacytoid dendritic cell 27 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117-, CD294+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD123- no -ILC3 Innate Lymphoid Cell 3 ILC Surface Only (SO) 1 CL:0002338 CD56-positive, CD161-positive immature natural killer cell, human 29 1 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD3-, CD56+, CD117+ CD45+, CD127+, CD294-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123- no -ILC3 Innate Lymphoid Cell 3 ILC Surface Only (SO) 2 CL:0001073 CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human 27 3 CD34-, CD3-, CD19-, CD3-, CD56+, CD117+ CD14-/CD33-/CD64- (no axiom on any alt.), CD45+, CD127+, CD294-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123- no -ILC3 Innate Lymphoid Cell 3 ILC Surface Only (SO) 3 CL:0001072 CD34-negative, CD117-positive innate lymphoid cell, human 23 3 CD34-, CD3-, CD19-, CD3-, CD117+ CD14-/CD33-/CD64- (no axiom on any alt.), CD45+, CD127+, CD56+, CD294-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123- no -cDC Conventional Dendritic Cell Exact 1 CL:0002008 CD34-positive, CD38-positive eosinophil progenitor cell 23 1 CD123+ (1 of 2 alt.), CD123+ (1 of 2 alt.), CD14-, CD45+, CD3-, CD19-, CD56- CD16-, CD33+/CD64+ (no axiom on any alt.), CD11C+, HLA-DR+, CD127- no -cDC Conventional Dendritic Cell Exact 2 CL:0000614 basophilic myelocyte 22 0 CD123+ (hi) (1 of 2 alt.), CD123+ (hi) (1 of 2 alt.), CD16-, CD33+ (1 of 2 alt.), CD3-, CD19-, CD56- CD14-, CD45+, CD11C+, HLA-DR+, CD127- no -cDC Conventional Dendritic Cell Exact 3 CL:0000942 thymic plasmacytoid dendritic cell 20 2 CD123+ (1 of 2 alt.), CD123+ (1 of 2 alt.), CD45+, CD3-, CD19-, CD56- CD14-, CD16-, CD33+/CD64+ (no axiom on any alt.), CD11C+, HLA-DR+, CD127- no -cDC1 Conventional Dendritic Cell 1 DCM Exact 1 CL:0002008 CD34-positive, CD38-positive eosinophil progenitor cell 23 1 CD123+ (1 of 2 alt.), CD123+ (1 of 2 alt.), CD14-, CD45+, CD3-, CD19-, CD56- CD16-, CD33+/CD64+ (no axiom on any alt.), CD11C+, HLA-DR+, CD1C-, CD141+, CD127-, CD172A-, FCER1A- no -cDC1 Conventional Dendritic Cell 1 DCM Exact 2 CL:0000614 basophilic myelocyte 22 0 CD123+ (hi) (1 of 2 alt.), CD123+ (hi) (1 of 2 alt.), CD16-, CD33+ (1 of 2 alt.), CD3-, CD19-, CD56- CD14-, CD45+, CD11C+, HLA-DR+, CD1C-, CD141+, CD127-, CD172A-, FCER1A- no -cDC1 Conventional Dendritic Cell 1 DCM Exact 3 CL:0000942 thymic plasmacytoid dendritic cell 20 2 CD123+ (1 of 2 alt.), CD123+ (1 of 2 alt.), CD45+, CD3-, CD19-, CD56- CD14-, CD16-, CD33+/CD64+ (no axiom on any alt.), CD11C+, HLA-DR+, CD1C-, CD141+, CD127-, CD172A-, FCER1A- no -cDC2 Conventional Dendritic Cell 2 DCM Exact 1 CL:0002008 CD34-positive, CD38-positive eosinophil progenitor cell 23 1 CD123+ (1 of 2 alt.), CD123+ (1 of 2 alt.), CD14-, CD45+, CD3-, CD19-, CD56- CD16-, CD33+/CD64+ (no axiom on any alt.), CD11C+, HLA-DR+, CD1C+, CD141-, CD127-, CD172A+, FCER1A+ no -cDC2 Conventional Dendritic Cell 2 DCM Exact 2 CL:0000614 basophilic myelocyte 22 0 CD123+ (hi) (1 of 2 alt.), CD123+ (hi) (1 of 2 alt.), CD16-, CD33+ (1 of 2 alt.), CD3-, CD19-, CD56- CD14-, CD45+, CD11C+, HLA-DR+, CD1C+, CD141-, CD127-, CD172A+, FCER1A+ no -cDC2 Conventional Dendritic Cell 2 DCM Exact 3 CL:0000942 thymic plasmacytoid dendritic cell 20 2 CD123+ (1 of 2 alt.), CD123+ (1 of 2 alt.), CD45+, CD3-, CD19-, CD56- CD14-, CD16-, CD33+/CD64+ (no axiom on any alt.), CD11C+, HLA-DR+, CD1C+, CD141-, CD127-, CD172A+, FCER1A+ no -pDC Peripheral Dendritic Cell Exact 1 CL:0000991 CD11c-negative plasmacytoid dendritic cell 22 2 CD3-, CD45+, CD123+ (1 of 2 alt.), CD303+ (1 of 3 alt.), CD56-, CD19- CD127-, CD15-/CD66B- (no axiom on any alt.), CD14-, CD16- no -pDC Peripheral Dendritic Cell Exact 2 CL:0000994 immature CD11c-negative plasmacytoid dendritic cell 22 2 CD3-, CD45+, CD123+ (1 of 2 alt.), CD303+ (1 of 3 alt.), CD56-, CD19- CD127-, CD15-/CD66B- (no axiom on any alt.), CD14-, CD16- no -pDC Peripheral Dendritic Cell Exact 3 CL:0000996 mature CD11c-negative plasmacytoid dendritic cell 22 2 CD3-, CD45+, CD123+ (1 of 2 alt.), CD303+ (1 of 3 alt.), CD56-, CD19- CD127-, CD15-/CD66B- (no axiom on any alt.), CD14-, CD16- no -Basophil Basophil Exact 1 CL:0000614 basophilic myelocyte 18 1 CD3-, CD33+ (1 of 2 alt.), CD193+ (hi) (1 of 4 alt.), CD56-, CD19-, CD16- CD15-/CD66B- (all alt. conflict) CD45+, CD127-, CD14-, FCER1A+, HLA-DR- no -Basophil Basophil Exact 2 CL:0002008 CD34-positive, CD38-positive eosinophil progenitor cell 18 0 CD3-, CD45+, CD123+ (1 of 2 alt.), CD56-, CD19-, CD14- CD193+/FCER1A+/HLA-DR-/CD303- (no axiom on any alt.), CD127-, CD15-/CD66B- (no axiom on any alt.), CD16-, FCER1A+, HLA-DR- no -Basophil Basophil Exact 3 CL:0000043 mature basophil 17 1 CD3-, CD123+ (hi) (1 of 2 alt.), CD193+ (hi) (1 of 4 alt.), CD56-, CD19- CD45+, CD127-, CD15-/CD66B- (no axiom on any alt.), CD14-, CD16-, FCER1A+, HLA-DR- no -Basophil Basophil Exact 1 CL:0000043 mature basophil 17 1 CD3-, CD193+ (hi), CD123+ (hi), CD56-, CD19- CD15-/CD66B- (no axiom on any alt.), CD45+, CD127- no -Basophil Basophil Exact 2 CL:0000767 basophil 17 1 CD3-, CD193+ (hi), CD123+ (hi), CD56-, CD19- CD15-/CD66B- (no axiom on any alt.), CD45+, CD127- no -Basophil Basophil Exact 3 CL:0000768 immature basophil 17 1 CD3-, CD193+ (hi), CD123+ (hi), CD56-, CD19- CD15-/CD66B- (no axiom on any alt.), CD45+, CD127- no -Mono Monocyte Exact 1 CL:0000614 basophilic myelocyte 24 0 CD56-, CD19-, CD123+ (hi), CD123+ (hi) (1 of 2 alt.), CD15+, CD66B+, CD3-, CD33+ (1 of 2 alt.) CD303-, CD45+, CD14+, CD11C+ no -Mono Monocyte Exact 2 CL:0000769 basophilic metamyelocyte 24 0 CD56-, CD19-, CD123+ (hi), CD123+ (hi) (1 of 2 alt.), CD15+, CD66B+, CD3-, CD33+ (1 of 2 alt.) CD303-, CD45+, CD14+, CD11C+ no -Mono Monocyte Exact 3 CL:0000942 thymic plasmacytoid dendritic cell 22 0 CD56-, CD19-, CD123+, CD123+ (1 of 2 alt.), CD45+, CD3- CD303-, CD14+, CD11C+, CD15+, CD66B+, CD64+/CD33+ (no axiom on any alt.) no -CMo Classical Monocyte Mono Exact 1 CL:0000614 basophilic myelocyte 28 0 CD56-, CD19-, CD123+ (hi), CD123+ (hi) (1 of 2 alt.), CD16-, CD15+, CD66B+, CD3-, CD33+ (1 of 2 alt.) CD303-, CD45+, CD14+ no -CMo Classical Monocyte Mono Exact 2 CL:0000942 thymic plasmacytoid dendritic cell 22 0 CD56-, CD19-, CD123+, CD123+ (1 of 2 alt.), CD45+, CD3- CD303-, CD14+, CD16-, CD15+, CD66B+, CD64+/CD33+ (no axiom on any alt.) no -CMo Classical Monocyte Mono Exact 3 CL:0000043 mature basophil 20 0 CD56-, CD19-, CD123+ (hi), CD123+ (hi) (1 of 2 alt.), CD66B+, CD3- CD303-, CD45+, CD14+, CD16-, CD15+, CD64+/CD33+ (no axiom on any alt.) no -NCMo Non-classical Monocyte Mono Exact 1 CL:0000769 basophilic metamyelocyte 28 0 CD56-, CD19-, CD123+ (hi), CD123+ (hi) (1 of 2 alt.), CD16+, CD15+, CD66B+, CD3-, CD33+ (1 of 2 alt.) CD303-, CD45+, CD14- no -NCMo Non-classical Monocyte Mono Exact 2 CL:0002008 CD34-positive, CD38-positive eosinophil progenitor cell 26 0 CD56-, CD19-, CD123+, CD123+ (1 of 2 alt.), CD45+, CD14-, CD3- CD303-, CD16+, CD15+, CD66B+, CD64+/CD33+ (no axiom on any alt.) no -NCMo Non-classical Monocyte Mono Exact 3 CL:0000557 granulocyte monocyte progenitor cell 24 2 CD56-, CD19-, CD123+, CD123+ (1 of 2 alt.), CD14-, CD3- CD303-, CD45+, CD16+, CD15+, CD66B+, CD64+/CD33+ (no axiom on any alt.) no -IntMo Intermediate Monocyte Mono Exact 1 CL:0000769 basophilic metamyelocyte 28 0 CD56-, CD19-, CD123+ (hi), CD123+ (hi) (1 of 2 alt.), CD16+, CD15+, CD66B+, CD3-, CD33+ (1 of 2 alt.) CD303-, CD45+, CD14+ no -IntMo Intermediate Monocyte Mono Exact 2 CL:0000942 thymic plasmacytoid dendritic cell 22 0 CD56-, CD19-, CD123+, CD123+ (1 of 2 alt.), CD45+, CD3- CD303-, CD14+, CD16+, CD15+, CD66B+, CD64+/CD33+ (no axiom on any alt.) no -IntMo Intermediate Monocyte Mono Exact 3 CL:0000043 mature basophil 20 0 CD56-, CD19-, CD123+ (hi), CD123+ (hi) (1 of 2 alt.), CD66B+, CD3- CD303-, CD45+, CD14+, CD16+, CD15+, CD64+/CD33+ (no axiom on any alt.) no -Neut Neutrophil Exact 1 CL:0000582 neutrophilic metamyelocyte 22 2 CD3-, CD56-, CD15+ (1 of 2 alt.), CD16+, CD19-, CD33+ (1 of 2 alt.) CD14-, CD123-, CD45+, CD193-, HLA-DR+, CD11C+ no -Neut Neutrophil Exact 2 CL:0000096 mature neutrophil 20 2 CD3-, CD56-, CD15+ (1 of 2 alt.), CD16+, CD19- CD14-, CD123-, CD45+, CD193-, HLA-DR+, CD11C+, CD64-/CD33+ (no axiom on any alt.) no -Neut Neutrophil Exact 3 CL:0000560 band form neutrophil 20 2 CD3-, CD56-, CD15+ (1 of 2 alt.), CD16+, CD19- CD14-, CD123-, CD45+, CD193-, HLA-DR+, CD11C+, CD64-/CD33+ (no axiom on any alt.) no -Eos Eosinophil Exact 1 CL:0000612 eosinophilic myelocyte 26 2 CD3-, CD56-, CD15+ (1 of 2 alt.), CD193+, CD16-, CD19-, CD33+ (1 of 2 alt.) CD14-, CD123-, CD45+, HLA-DR+, CD11C+ no -Eos Eosinophil Exact 2 CL:0000041 mature eosinophil 20 2 CD3-, CD56-, CD66B+ (1 of 2 alt.), CD193+, CD19- CD14-, CD123-, CD45+, CD16-, HLA-DR+, CD11C+, CD64-/CD33+ (no axiom on any alt.) no -Eos Eosinophil Exact 3 CL:0000580 neutrophilic myelocyte 20 0 CD3-, CD56-, CD15+ (1 of 2 alt.), CD16-, CD19-, CD33+ (1 of 2 alt.) CD14-, CD123-, CD45+, CD193+, HLA-DR+, CD11C+ no -B cell B cell Exact 1 CL:0000819 B-1 B cell 15 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -B cell B cell Exact 2 CL:0000820 B-1a B cell 15 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -B cell B cell Exact 3 CL:0000821 B-1b B cell 15 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -ASC Antibody Secreting Cell Surface Only (SO) 1 CL:0002115 B220-positive CD38-positive unswitched memory B cell 23 1 CD3-, CD45+, CD19+, CD27+, CD38+, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -ASC Antibody Secreting Cell Surface Only (SO) 2 CL:0002116 B220-low CD38-positive unswitched memory B cell 23 1 CD3-, CD45+ (dim), CD19+, CD27+, CD38+, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -ASC Antibody Secreting Cell Surface Only (SO) 3 CL:0002122 B220-positive CD38-positive IgG-negative class switched memory B cell 23 1 CD3-, CD45+, CD19+, CD27+, CD38+, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -PB Plasmablast ASC Surface Only (SO) 1 CL:0002115 B220-positive CD38-positive unswitched memory B cell 26 0 CD3-, CD45+, CD19+, CD27+, CD38+, CD138-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -PB Plasmablast ASC Surface Only (SO) 2 CL:0002116 B220-low CD38-positive unswitched memory B cell 26 0 CD3-, CD45+ (dim), CD19+, CD27+, CD38+, CD138-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -PB Plasmablast ASC Surface Only (SO) 3 CL:0002122 B220-positive CD38-positive IgG-negative class switched memory B cell 26 0 CD3-, CD45+, CD19+, CD27+, CD38+, CD138-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -PC Plasma Cell ASC Surface Only (SO) 1 CL:0000962 Bm2 B cell 16 1 CD3-, CD45+, CD19+, CD38+ CD20- CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27+, CD138+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -PC Plasma Cell ASC Surface Only (SO) 2 CL:0002047 fraction B precursor B cell 13 1 CD3-, CD45+, CD19+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27+, CD38+, CD138+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-, CD20- no -PC Plasma Cell ASC Surface Only (SO) 3 CL:0002048 late pro-B cell 13 1 CD3-, CD19+ (dim), CD38+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27+, CD138+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-, CD20- no -Transitional Transitional B cell Exact no qualified markers found -T1/T2 B Transitonal B cell 1 and 2 1 CL:0002109 B220-positive CD38-positive naive B cell 23 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD38+ (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD24+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -T1/T2 B Transitonal B cell 1 and 2 2 CL:0002110 B220-low CD38-positive naive B cell 23 1 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27-, CD38+ (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD24+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -T1/T2 B Transitonal B cell 1 and 2 3 CL:0002047 fraction B precursor B cell 21 1 CD3-, CD45+, CD19+ (1 of 2 alt.), CD10+ (1 of 2 alt.), CD24+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-, CD20+ no -Mature B Mature B cell Exact 1 CL:0000961 Bm1 B cell 19 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -Mature B Mature B cell Exact 2 CL:0002102 CD38-negative naive B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -Mature B Mature B cell Exact 3 CL:0002055 CD38-negative immature B cell 16 2 CD3-, CD20+ (1 of 2 alt.), CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -T3 Transitional B cell 3 Mature B Exact 1 CL:0000961 Bm1 B cell 19 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD24+, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -T3 Transitional B cell 3 Mature B Exact 2 CL:0002102 CD38-negative naive B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24+, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -T3 Transitional B cell 3 Mature B Exact 3 CL:0002109 B220-positive CD38-positive naive B cell 19 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38-/CD10- (no axiom on any alt.), CD24+, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -Naive Naive B cell Mature B Exact 1 CL:0002102 CD38-negative naive B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24-, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -Naive Naive B cell Mature B Exact 2 CL:0002109 B220-positive CD38-positive naive B cell 20 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38-/CD10- (no axiom on any alt.), CD24-, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -Naive Naive B cell Mature B Exact 3 CL:0002110 B220-low CD38-positive naive B cell 20 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38-/CD10- (no axiom on any alt.), CD24-, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -BDN Double Negative B cells Mature B Exact 1 CL:0002102 CD38-negative naive B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24-, IGD-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -BDN Double Negative B cells Mature B Exact 2 CL:0000961 Bm1 B cell 18 0 CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD24-, IGD-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -BDN Double Negative B cells Mature B Exact 3 CL:0002109 B220-positive CD38-positive naive B cell 18 0 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38-/CD10- (no axiom on any alt.), CD24-, IGD-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -BDN1 Double Negative B cell 1 BDN Exact 1 CL:0000961 Bm1 B cell 23 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 2 alt.), CD21+, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD24+, IGD-, CD11C-, CD185+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -BDN1 Double Negative B cell 1 BDN Exact 2 CL:0002055 CD38-negative immature B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD38- (1 of 2 alt.), CD21+ (dim), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD24+, IGD-, CD11C-, CD185+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -BDN1 Double Negative B cell 1 BDN Exact 3 CL:0002102 CD38-negative naive B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24+, IGD-, CD21+, CD11C-, CD185+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -BDN2 Double Negative B cell 2 BDN Exact 1 CL:0002102 CD38-negative naive B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24-, IGD-, CD21-, CD11C+, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -BDN2 Double Negative B cell 2 BDN Exact 2 CL:0002109 B220-positive CD38-positive naive B cell 19 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38-/CD10- (no axiom on any alt.), CD24-, IGD-, CD21-, CD11C+, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -BDN2 Double Negative B cell 2 BDN Exact 3 CL:0002110 B220-low CD38-positive naive B cell 19 1 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38-/CD10- (no axiom on any alt.), CD24-, IGD-, CD21-, CD11C+, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -BDN3 Double Negative B cell 3 BDN Exact 1 CL:0002102 CD38-negative naive B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24+, IGD-, CD21-, CD11C-, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -BDN3 Double Negative B cell 3 BDN Exact 2 CL:0000958 T1 B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD24+ (hi), CD21-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD38- (hi)/CD10- (no axiom on any alt.), IGD-, CD11C-, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -BDN3 Double Negative B cell 3 BDN Exact 3 CL:0002109 B220-positive CD38-positive naive B cell 19 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38-/CD10- (no axiom on any alt.), CD24+, IGD-, CD21-, CD11C-, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -BDN4 Double Negative B cell 4 BDN Exact 1 CL:0000961 Bm1 B cell 23 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 2 alt.), CD21+, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD24+, IGD-, CD11C-, CD185+, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -BDN4 Double Negative B cell 4 BDN Exact 2 CL:0002055 CD38-negative immature B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD38- (1 of 2 alt.), CD21+ (dim), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD24+, IGD-, CD11C-, CD185+, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -BDN4 Double Negative B cell 4 BDN Exact 3 CL:0002102 CD38-negative naive B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24+, IGD-, CD21+, CD11C-, CD185+, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -Bmem Memory B cell Exact 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -Bmem Memory B cell Exact 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -Bmem Memory B cell Exact 3 CL:0002108 CD38-negative IgG memory B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -IgD only IgD only Memory B cell Bmem Exact 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD+, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -IgD only IgD only Memory B cell Bmem Exact 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD+, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -IgD only IgD only Memory B cell Bmem Exact 3 CL:0002108 CD38-negative IgG memory B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD+, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -Unswitched Unswitched Memory B cell Bmem Exact 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 25 3 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD+, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -Unswitched Unswitched Memory B cell Bmem Exact 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 25 3 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD+, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -Unswitched Unswitched Memory B cell Bmem Exact 3 CL:0002111 CD38-negative unswitched memory B cell 21 3 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD+, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -IgM only IgM-only Memory B cell Bmem Exact 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -IgM only IgM-only Memory B cell Bmem Exact 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -IgM only IgM-only Memory B cell Bmem Exact 3 CL:0002108 CD38-negative IgG memory B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -Switched Switched Memory B cell Bmem Exact 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 25 3 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -Switched Switched Memory B cell Bmem Exact 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 25 3 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -Switched Switched Memory B cell Bmem Exact 3 CL:0002111 CD38-negative unswitched memory B cell 21 3 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -IgA IgA-Class Switched B cell Switched Surface Only (SO) 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA+, IGG-, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -IgA IgA-Class Switched B cell Switched Surface Only (SO) 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA+, IGG-, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -IgA IgA-Class Switched B cell Switched Surface Only (SO) 3 CL:0002118 CD38-negative IgG-negative class switched memory B cell 21 3 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM-, IGA+, IGG-, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -IgG IgG-Class Switched B cell Switched Surface Only (SO) 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA-, IGG+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -IgG IgG-Class Switched B cell Switched Surface Only (SO) 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA-, IGG+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -IgG IgG-Class Switched B cell Switched Surface Only (SO) 3 CL:0002118 CD38-negative IgG-negative class switched memory B cell 22 4 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM-, IGA-, IGG+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -IgE IgE-Class Switched B cell Switched Surface Only (SO) 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA-, IGG-, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -IgE IgE-Class Switched B cell Switched Surface Only (SO) 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA-, IGG-, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -IgE IgE-Class Switched B cell Switched Surface Only (SO) 3 CL:0002118 CD38-negative IgG-negative class switched memory B cell 21 3 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM-, IGA-, IGG-, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123- no -T cell T lymphocyte Exact 1 CL:0002468 Gr1-low myeloid suppressor cell 7 1 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -T cell T lymphocyte Exact 2 CL:0002477 adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -T cell T lymphocyte Exact 3 CL:0002478 F4/80-negative adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ T cell CD56+ T cell T cell Exact 1 CL:0002468 Gr1-low myeloid suppressor cell 7 1 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ T cell CD56+ T cell T cell Exact 2 CL:0002477 adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ T cell CD56+ T cell T cell Exact 3 CL:0002478 F4/80-negative adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4 T cell CD56+ CD4 T cell CD4+ T cell Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4 T cell CD56+ CD4 T cell CD4+ T cell Exact 2 CL:0002430 CD4-intermediate, CD8-positive double-positive thymocyte 9 1 CD4+ (dim), CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4 T cell CD56+ CD4 T cell CD4+ T cell Exact 3 CL:0002431 CD4-positive, CD8-intermediate double-positive thymocyte 9 1 CD4+, CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD8 T cell CD56+ CD8 T cell CD8+ T cell Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 14 2 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD8 T cell CD56+ CD8 T cell CD8+ T cell Exact 2 CL:0000907 central memory CD8-positive, alpha-beta T cell 14 2 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD8 T cell CD56+ CD8 T cell CD8+ T cell Exact 3 CL:0000913 effector memory CD8-positive, alpha-beta T cell 14 2 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ TCRab CD56+ alpha/beta T cell TCRab Exact 1 CL:0002468 Gr1-low myeloid suppressor cell 7 1 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ TCRab CD56+ alpha/beta T cell TCRab Exact 2 CL:0002477 adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ TCRab CD56+ alpha/beta T cell TCRab Exact 3 CL:0002478 F4/80-negative adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4+ TCRab CD56+ CD4+ alpha/beta T cell CD4+ TCRab T cell Exact 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4+ TCRab CD56+ CD4+ alpha/beta T cell CD4+ TCRab T cell Exact 2 CL:0000904 central memory CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4+ TCRab CD56+ CD4+ alpha/beta T cell CD4+ TCRab T cell Exact 3 CL:0000905 effector memory CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD8+ TCRab CD56+ CD8+ alpha/beta T cell CD8+ TCRab T cell Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD8+ TCRab CD56+ CD8+ alpha/beta T cell CD8+ TCRab T cell Exact 2 CL:0000907 central memory CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD8+ TCRab CD56+ CD8+ alpha/beta T cell CD8+ TCRab T cell Exact 3 CL:0000913 effector memory CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4+/CD8+ TCRab CD56+ CD4+/CD8+ alpha/beta T cell CD4+/CD8+ TCRab T cell Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4+/CD8+ TCRab CD56+ CD4+/CD8+ alpha/beta T cell CD4+/CD8+ TCRab T cell Exact 2 CL:0000809 double-positive, alpha-beta thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4+/CD8+ TCRab CD56+ CD4+/CD8+ alpha/beta T cell CD4+/CD8+ TCRab T cell Exact 3 CL:0002427 resting double-positive thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4-/CD8- TCRab CD56+ CD4-/CD8- alpha/beta T cell CD4-/CD8- TCRab T cell Exact 1 CL:0000803 CD4-negative CD8-negative gamma-delta intraepithelial T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4-/CD8- TCRab CD56+ CD4-/CD8- alpha/beta T cell CD4-/CD8- TCRab T cell Exact 2 CL:0000924 CD4-negative, CD8-negative type I NK T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4-/CD8- TCRab CD56+ CD4-/CD8- alpha/beta T cell CD4-/CD8- TCRab T cell Exact 3 CL:0000928 activated CD4-negative, CD8-negative type I NK T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ TCRgd CD56+ gamma/delta T cell TCRgd Exact 1 CL:0002468 Gr1-low myeloid suppressor cell 7 1 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ TCRgd CD56+ gamma/delta T cell TCRgd Exact 2 CL:0002477 adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ TCRgd CD56+ gamma/delta T cell TCRgd Exact 3 CL:0002478 F4/80-negative adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4+ TCRgd CD56+ CD4+ gamma/delta T cell CD4+ TCRgd T cell Exact 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4+ TCRgd CD56+ CD4+ gamma/delta T cell CD4+ TCRgd T cell Exact 2 CL:0000904 central memory CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4+ TCRgd CD56+ CD4+ gamma/delta T cell CD4+ TCRgd T cell Exact 3 CL:0000905 effector memory CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD8+ TCRgd CD56+ CD8+ gamma/delta T cell CD8+ TCRgd T cell Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD8+ TCRgd CD56+ CD8+ gamma/delta T cell CD8+ TCRgd T cell Exact 2 CL:0000907 central memory CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD8+ TCRgd CD56+ CD8+ gamma/delta T cell CD8+ TCRgd T cell Exact 3 CL:0000913 effector memory CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4+/CD8+ TCRgd CD56+ CD4+/CD8+ gamma/delta T cell CD4+/CD8+ TCRgd Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4+/CD8+ TCRgd CD56+ CD4+/CD8+ gamma/delta T cell CD4+/CD8+ TCRgd Exact 2 CL:0000809 double-positive, alpha-beta thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD4+/CD8+ TCRgd CD56+ CD4+/CD8+ gamma/delta T cell CD4+/CD8+ TCRgd Exact 3 CL:0002427 resting double-positive thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD8-/CD8- TCRgd CD56+ CD8-/CD8- gamma/delta T cell CD4-/CD8- TCRgd Exact 1 CL:0000803 CD4-negative CD8-negative gamma-delta intraepithelial T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD8-/CD8- TCRgd CD56+ CD8-/CD8- gamma/delta T cell CD4-/CD8- TCRgd Exact 2 CL:0000924 CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD56+ CD8-/CD8- TCRgd CD56+ CD8-/CD8- gamma/delta T cell CD4-/CD8- TCRgd Exact 3 CL:0000928 activated CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -iNKT Invariant Natural Killer T cell T cell Exact 1 CL:0002468 Gr1-low myeloid suppressor cell 7 1 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -iNKT Invariant Natural Killer T cell T cell Exact 2 CL:0002477 adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -iNKT Invariant Natural Killer T cell T cell Exact 3 CL:0002478 F4/80-negative adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -TCRab alpha/beta T cell T cell Exact 1 CL:0002468 Gr1-low myeloid suppressor cell 7 1 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -TCRab alpha/beta T cell T cell Exact 2 CL:0002477 adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -TCRab alpha/beta T cell T cell Exact 3 CL:0002478 F4/80-negative adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -TCRgd gamma/delta T cell T cell Exact 1 CL:0002468 Gr1-low myeloid suppressor cell 7 1 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -TCRgd gamma/delta T cell T cell Exact 2 CL:0002477 adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -TCRgd gamma/delta T cell T cell Exact 3 CL:0002478 F4/80-negative adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ T cell alpha/beta and gamma/delta CD4+ T cells T cell Exact 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ T cell alpha/beta and gamma/delta CD4+ T cells T cell Exact 2 CL:0000904 central memory CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ T cell alpha/beta and gamma/delta CD4+ T cells T cell Exact 3 CL:0000905 effector memory CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ T cell alpha/beta and gamma/delta CD8+ T cells T cell Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ T cell alpha/beta and gamma/delta CD8+ T cells T cell Exact 2 CL:0000907 central memory CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ T cell alpha/beta and gamma/delta CD8+ T cells T cell Exact 3 CL:0000913 effector memory CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+/CD8+ T cell alpha/beta and gamma/delta CD4+ and CD8+ T cells T cell Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+/CD8+ T cell alpha/beta and gamma/delta CD4+ and CD8+ T cells T cell Exact 2 CL:0000809 double-positive, alpha-beta thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+/CD8+ T cell alpha/beta and gamma/delta CD4+ and CD8+ T cells T cell Exact 3 CL:0002427 resting double-positive thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4-/CD8- T cell alpha/beta and gamma/delta CD4- and CD8- T cells T cell Exact 1 CL:0000803 CD4-negative CD8-negative gamma-delta intraepithelial T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4-/CD8- T cell alpha/beta and gamma/delta CD4- and CD8- T cells T cell Exact 2 CL:0000924 CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4-/CD8- T cell alpha/beta and gamma/delta CD4- and CD8- T cells T cell Exact 3 CL:0000928 activated CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRab T cell CD4+ alpha/beta T cell TCRab Exact 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRab T cell CD4+ alpha/beta T cell TCRab Exact 2 CL:0000904 central memory CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRab T cell CD4+ alpha/beta T cell TCRab Exact 3 CL:0000905 effector memory CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRab T cell CD8+ alpha/beta T cell TCRab Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRab T cell CD8+ alpha/beta T cell TCRab Exact 2 CL:0000907 central memory CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRab T cell CD8+ alpha/beta T cell TCRab Exact 3 CL:0000913 effector memory CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+/CD8+ TCRab T cell CD4+ and CD8+ alpha/beta T cell TCRab Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+/CD8+ TCRab T cell CD4+ and CD8+ alpha/beta T cell TCRab Exact 2 CL:0000809 double-positive, alpha-beta thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+/CD8+ TCRab T cell CD4+ and CD8+ alpha/beta T cell TCRab Exact 3 CL:0002427 resting double-positive thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4-/CD8- TCRab T cell CD4- and CD8- alpha/beta T cell TCRab Exact 1 CL:0000803 CD4-negative CD8-negative gamma-delta intraepithelial T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4-/CD8- TCRab T cell CD4- and CD8- alpha/beta T cell TCRab Exact 2 CL:0000924 CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4-/CD8- TCRab T cell CD4- and CD8- alpha/beta T cell TCRab Exact 3 CL:0000928 activated CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRgd T cell CD4+ gamma/delta T cell TCRgd Exact 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRgd T cell CD4+ gamma/delta T cell TCRgd Exact 2 CL:0000904 central memory CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRgd T cell CD4+ gamma/delta T cell TCRgd Exact 3 CL:0000905 effector memory CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRgd T cell CD8+ gamma/delta T cell TCRgd Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRgd T cell CD8+ gamma/delta T cell TCRgd Exact 2 CL:0000907 central memory CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRgd T cell CD8+ gamma/delta T cell TCRgd Exact 3 CL:0000913 effector memory CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+/CD8+ TCRgd CD4+/CD8+ gamma/delta T cell TCRgd Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+/CD8+ TCRgd CD4+/CD8+ gamma/delta T cell TCRgd Exact 2 CL:0000809 double-positive, alpha-beta thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+/CD8+ TCRgd CD4+/CD8+ gamma/delta T cell TCRgd Exact 3 CL:0002427 resting double-positive thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4-/CD8- TCRgd CD4-/CD8- gamma/delta T cell TCRgd Exact 1 CL:0000803 CD4-negative CD8-negative gamma-delta intraepithelial T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4-/CD8- TCRgd CD4-/CD8- gamma/delta T cell TCRgd Exact 2 CL:0000924 CD4-negative, CD8-negative type I NK T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4-/CD8- TCRgd CD4-/CD8- gamma/delta T cell TCRgd Exact 3 CL:0000928 activated CD4-negative, CD8-negative type I NK T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -MAIT Mucosal-associated Invariant T cell T Lymph Exact 1 CL:0002468 Gr1-low myeloid suppressor cell 7 1 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -MAIT Mucosal-associated Invariant T cell T Lymph Exact 2 CL:0000485 mucosal type mast cell 6 2 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -MAIT Mucosal-associated Invariant T cell T Lymph Exact 3 CL:0002477 adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Conv TCRab T Lymph Exact 1 CL:0002468 Gr1-low myeloid suppressor cell 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Conv TCRab T Lymph Exact 2 CL:0002477 adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Conv TCRab T Lymph Exact 3 CL:0002478 F4/80-negative adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ Conv TCRab ConT TCRab Exact 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ Conv TCRab ConT TCRab Exact 2 CL:0000904 central memory CD4-positive, alpha-beta T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ Conv TCRab ConT TCRab Exact 3 CL:0000905 effector memory CD4-positive, alpha-beta T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ Conv TCRab ConT TCRab Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 12 0 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ Conv TCRab ConT TCRab Exact 2 CL:0000907 central memory CD8-positive, alpha-beta T cell 12 0 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ Conv TCRab ConT TCRab Exact 3 CL:0000913 effector memory CD8-positive, alpha-beta T cell 12 0 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+/CD8+ Conv TCRab ConT TCRab Exact 1 CL:0000809 double-positive, alpha-beta thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+/CD8+ Conv TCRab ConT TCRab Exact 2 CL:0002039 immature NK T cell stage I, mouse 8 0 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+/CD8+ Conv TCRab ConT TCRab Exact 3 CL:0002427 resting double-positive thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4-/CD8- Conv TCRab ConT TCRab Exact 1 CL:0000803 CD4-negative CD8-negative gamma-delta intraepithelial T cell 9 1 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4-/CD8- Conv TCRab ConT TCRab Exact 2 CL:0000924 CD4-negative, CD8-negative type I NK T cell 9 1 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4-/CD8- Conv TCRab ConT TCRab Exact 3 CL:0000928 activated CD4-negative, CD8-negative type I NK T cell 9 1 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Tcm Central memory alpha/beta and gamma/delta T cells T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Tcm Central memory alpha/beta and gamma/delta T cells T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Tcm Central memory alpha/beta and gamma/delta T cells T cell Exact 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ Tcm CD4+ central memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ Tcm CD4+ central memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ Tcm CD4+ central memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRab Tcm CD4+ central memory alpha/beta T cell CD4+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRab Tcm CD4+ central memory alpha/beta T cell CD4+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRab Tcm CD4+ central memory alpha/beta T cell CD4+ TCRab T cell Exact 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRgd Tcm CD4+ central memory gamma/delta T cell CD4+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRgd Tcm CD4+ central memory gamma/delta T cell CD4+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRgd Tcm CD4+ central memory gamma/delta T cell CD4+ TCRgd T cell 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ Tcm CD8+ central memory T cell CD8+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ Tcm CD8+ central memory T cell CD8+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ Tcm CD8+ central memory T cell CD8+ T cell Exact 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRab Tcm CD8+ central memory alpha/beta T cell CD8+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRab Tcm CD8+ central memory alpha/beta T cell CD8+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRab Tcm CD8+ central memory alpha/beta T cell CD8+ TCRab T cell Exact 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRgd Tcm CD8+ central memory gamma/delta T cell CD8+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRgd Tcm CD8+ central memory gamma/delta T cell CD8+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRgd Tcm CD8+ central memory gamma/delta T cell CD8+ TCRgd T cell 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Tnaive Naive alpha/beta and gamma/delta T cell T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Tnaive Naive alpha/beta and gamma/delta T cell T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Tnaive Naive alpha/beta and gamma/delta T cell T cell Exact 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ Tnaive CD4+ Naive alpha/beta and gamma/delta T cell CD4+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ Tnaive CD4+ Naive alpha/beta and gamma/delta T cell CD4+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ Tnaive CD4+ Naive alpha/beta and gamma/delta T cell CD4+ T cell Exact 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRab Tnaive CD4+ naive alpha/beta T cell CD4 TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRab Tnaive CD4+ naive alpha/beta T cell CD4 TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRab Tnaive CD4+ naive alpha/beta T cell CD4 TCRab T cell Exact 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRgd Tnaive CD4+ naive gamma/delta T cell CD4+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRgd Tnaive CD4+ naive gamma/delta T cell CD4+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRgd Tnaive CD4+ naive gamma/delta T cell CD4+ TCRgd T cell 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ Tnaive CD8+ naive alpha/beta and gamma/delta T cell CD8+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ Tnaive CD8+ naive alpha/beta and gamma/delta T cell CD8+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ Tnaive CD8+ naive alpha/beta and gamma/delta T cell CD8+ T cell Exact 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRab Tnaive CD8+ naive alpha/beta T cell CD8+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRab Tnaive CD8+ naive alpha/beta T cell CD8+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRab Tnaive CD8+ naive alpha/beta T cell CD8+ TCRab T cell Exact 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRgd Tnaive CD8+ naive gamma/delta T cell CD8+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRgd Tnaive CD8+ naive gamma/delta T cell CD8+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRgd Tnaive CD8+ naive gamma/delta T cell CD8+ TCRgd T cell 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Tem Effector memory T cell T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Tem Effector memory T cell T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Tem Effector memory T cell T cell Exact 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.) no -CD4+ Tem CD4+ effector memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ Tem CD4+ effector memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ Tem CD4+ effector memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.) no -CD4+ TCRab Tem CD4+ effector memory alpha/beta T cell CD4+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRab Tem CD4+ effector memory alpha/beta T cell CD4+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRab Tem CD4+ effector memory alpha/beta T cell CD4+ TCRab T cell Exact 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.) no -CD4+ TCRgd Tem CD4+ effector memory gamma/delta T cell CD4+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRgd Tem CD4+ effector memory gamma/delta T cell CD4+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRgd Tem CD4+ effector memory gamma/delta T cell CD4+ TCRgd T cell 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.) no -CD8+ Tem CD8+ effector memory T cell CD8+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ Tem CD8+ effector memory T cell CD8+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ Tem CD8+ effector memory T cell CD8+ T cell Exact 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.) no -CD8+ TCRab Tem CD8+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRab Tem CD8+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRab Tem CD8+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.) no -CD8+ TCRgd Tem CD8+ effector memory gamma/delta T cell CD8+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRgd Tem CD8+ effector memory gamma/delta T cell CD8+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRgd Tem CD8+ effector memory gamma/delta T cell CD8+ TCRgd T cell 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.) no -Temra CD45RA+ effector memory alpha/beta and gamma/delta T cell T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Temra CD45RA+ effector memory alpha/beta and gamma/delta T cell T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Temra CD45RA+ effector memory alpha/beta and gamma/delta T cell T cell Exact 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ Temra CD4+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD4+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ Temra CD4+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD4+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ Temra CD4+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD4+ T cell Exact 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRab Temra CD4+ CD45RA+ effector memory alpha/beta T cell CD4 TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRab Temra CD4+ CD45RA+ effector memory alpha/beta T cell CD4 TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRab Temra CD4+ CD45RA+ effector memory alpha/beta T cell CD4 TCRab T cell Exact 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRgd Temra CD4+ CD45RA+ effector memory gamma/delta T cell CD4+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRgd Temra CD4+ CD45RA+ effector memory gamma/delta T cell CD4+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4+ TCRgd Temra CD4+ CD45RA+ effector memory gamma/delta T cell CD4+ TCRgd T cell 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ Temra CD8+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD8+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ Temra CD8+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD8+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ Temra CD8+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD8+ T cell Exact 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRab Temra CD8+ CD45RA+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 15 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRab Temra CD8+ CD45RA+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD8+ TCRab Temra CD8+ CD45RA+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 3 CL:0000782 myeloid dendritic cell 11 1 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -T helper TCRab 1 CL:0002468 Gr1-low myeloid suppressor cell 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -T helper TCRab 2 CL:0002477 adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -T helper TCRab 3 CL:0002478 F4/80-negative adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -T cytotoxic TCRab 1 CL:0001057 myeloid dendritic cell, human 14 0 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -T cytotoxic TCRab 2 CL:0002000 Kit-positive erythroid progenitor cell 12 0 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -T cytotoxic TCRab 3 CL:0000782 myeloid dendritic cell 10 0 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -ConT Treg-like CD4 ConT 1 CL:0000896 activated CD4-positive, alpha-beta T cell 13 1 CD4+, CD25+, CD127- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -ConT Treg-like CD4 ConT 2 CL:0001043 activated CD4-positive, alpha-beta T cell, human 13 1 CD4+, CD25+, CD127- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -ConT Treg-like CD4 ConT 3 CL:0001044 effector CD4-positive, alpha-beta T cell 9 1 CD45+, CD4+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD25+, CD127-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -ConT Tfh-like CD4 ConT 1 CL:0000896 activated CD4-positive, alpha-beta T cell 13 1 CD4+, CD25+, CD127- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -ConT Tfh-like CD4 ConT 2 CL:0001043 activated CD4-positive, alpha-beta T cell, human 13 1 CD4+, CD25+, CD127- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -ConT Tfh-like CD4 ConT 3 CL:0001044 effector CD4-positive, alpha-beta T cell 9 1 CD45+, CD4+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD25+, CD127-, CD185+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Th1-like CD4 ConT 1 CL:0000896 activated CD4-positive, alpha-beta T cell 13 1 CD4+, CD25+, CD127- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185-, CD183+, CD196-, CD194-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Th1-like CD4 ConT 2 CL:0001043 activated CD4-positive, alpha-beta T cell, human 13 1 CD4+, CD25+, CD127- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185-, CD183+, CD196-, CD194-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Th1-like CD4 ConT 3 CL:0000545 T-helper 1 cell 12 0 CD4+, CD183+, CD196- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD25+, CD127-, CD185-, CD194-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Th2-like CD4 ConT 1 CL:0000896 activated CD4-positive, alpha-beta T cell 13 1 CD4+, CD25+, CD127- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185-, CD183-, CD196-, CD194+, CD294+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.) no -Th2-like CD4 ConT 2 CL:0001043 activated CD4-positive, alpha-beta T cell, human 13 1 CD4+, CD25+, CD127- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185-, CD183-, CD196-, CD194+, CD294+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.) no -Th2-like CD4 ConT 3 CL:0001051 CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell 13 1 CD4+, CD183-, CD196- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD25+, CD127-, CD185-, CD194+, CD294+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.) no -Th9-like 1 CL:0000546 T-helper 2 cell 12 0 CD4+, CD183-, CD196- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD25+, CD127-, CD185-, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+ no -Th9-like 2 CL:0000896 activated CD4-positive, alpha-beta T cell 12 0 CD4+, CD25+, CD127- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185-, CD183-, CD196-, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+ no -Th9-like 3 CL:0001043 activated CD4-positive, alpha-beta T cell, human 12 0 CD4+, CD25+, CD127- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185-, CD183-, CD196-, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+ no -Th17-like CD4 ConT 1 CL:0000896 activated CD4-positive, alpha-beta T cell 13 1 CD4+, CD25+, CD127- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185-, CD183-, CD196+, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD161+, IL-17A+ no -Th17-like CD4 ConT 2 CL:0001043 activated CD4-positive, alpha-beta T cell, human 13 1 CD4+, CD25+, CD127- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185-, CD183-, CD196+, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD161+, IL-17A+ no -Th17-like CD4 ConT 3 CL:0000899 T-helper 17 cell 12 0 CD4+, CD183-, CD196+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD25+, CD127-, CD185-, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD161+, IL-17A+ no -CD4 PanT helper CD4/CD8 PanT 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4 PanT helper CD4/CD8 PanT 2 CL:0000904 central memory CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4 PanT helper CD4/CD8 PanT 3 CL:0000905 effector memory CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Th1-like Surface Only 1 CL:0000545 T-helper 1 cell 16 0 CD4+, CD8-, CD183+, CD196- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD185-, CD194-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, IFNG+, IL-4-, IL-5-, IL-13- no -Th1-like Surface Only 2 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183+, CD185-, CD194-, CD196-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, IFNG+, IL-4-, IL-5-, IL-13- no -Th1-like Surface Only 3 CL:0000904 central memory CD4-positive, alpha-beta T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183+, CD185-, CD194-, CD196-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, IFNG+, IL-4-, IL-5-, IL-13- no -Th2-like 1 CL:0000546 T-helper 2 cell 16 0 CD4+, CD8-, CD183-, CD196- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD185-, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.) no -Th2-like 2 CL:0001045 naive CCR4-positive regulatory T cell 16 0 CD45+, CD4+, CD8-, CD194+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD196-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.) no -Th2-like 3 CL:0001046 memory CCR4-positive regulatory T cell 16 0 CD45+, CD4+, CD8-, CD194+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD196-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.) no -Th9-like 1 CL:0000546 T-helper 2 cell 16 0 CD4+, CD8-, CD183-, CD196- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD185-, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+ no -Th9-like 2 CL:0001045 naive CCR4-positive regulatory T cell 16 0 CD45+, CD4+, CD8-, CD194+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD196-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+ no -Th9-like 3 CL:0001046 memory CCR4-positive regulatory T cell 16 0 CD45+, CD4+, CD8-, CD194+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD196-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+ no -Th17-like 1 CL:0000899 T-helper 17 cell 16 0 CD4+, CD8-, CD183-, CD196+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD185-, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, IL-17A+ no -Th17-like 2 CL:0001045 naive CCR4-positive regulatory T cell 16 0 CD45+, CD4+, CD8-, CD194+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD196+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, IL-17A+ no -Th17-like 3 CL:0001046 memory CCR4-positive regulatory T cell 16 0 CD45+, CD4+, CD8-, CD194+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD196+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, IL-17A+ no -Tfh 1 CL:0001057 myeloid dendritic cell, human 14 0 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Tfh 2 CL:0002000 Kit-positive erythroid progenitor cell 12 0 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Tfh 3 CL:0000782 myeloid dendritic cell 10 0 CD19- (1 of 2 alt.), CD123-, CD11C+ (hi) CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4 PanT Treg CD4/CD8 PanT 1 CL:0000896 activated CD4-positive, alpha-beta T cell 17 1 CD4+, CD8-, CD127-, CD25+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4 PanT Treg CD4/CD8 PanT 2 CL:0001043 activated CD4-positive, alpha-beta T cell, human 17 1 CD4+, CD8-, CD127-, CD25+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -CD4 PanT Treg CD4/CD8 PanT 3 CL:0001044 effector CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD127-, CD25+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Vg9 Vd2 TCRgd 1 CL:0002468 Gr1-low myeloid suppressor cell 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), TCRVD2+, TCRVG9+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-, DELTA1- no -Vg9 Vd2 TCRgd 2 CL:0002477 adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), TCRVD2+, TCRVG9+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-, DELTA1- no -Vg9 Vd2 TCRgd 3 CL:0002478 F4/80-negative adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), TCRVD2+, TCRVG9+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-, DELTA1- no -Vd2 TCRgd 1 CL:0002468 Gr1-low myeloid suppressor cell 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), VD1-, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-, DELTA1- no -Vd2 TCRgd 2 CL:0002477 adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), VD1-, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-, DELTA1- no -Vd2 TCRgd 3 CL:0002478 F4/80-negative adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), VD1-, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-, DELTA1- no -Vd3 TCRgd 1 CL:0002468 Gr1-low myeloid suppressor cell 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Vd3 TCRgd 2 CL:0002477 adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Vd3 TCRgd 3 CL:0002478 F4/80-negative adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Vg9 Vd1 1 CL:0002468 Gr1-low myeloid suppressor cell 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Vg9 Vd1 2 CL:0002477 adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Vg9 Vd1 3 CL:0002478 F4/80-negative adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Vd1 TCRgd 1 CL:0002468 Gr1-low myeloid suppressor cell 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Vd1 TCRgd 2 CL:0002477 adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Vd1 TCRgd 3 CL:0002478 F4/80-negative adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Vg9 TCRgd 1 CL:0002468 Gr1-low myeloid suppressor cell 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Vg9 TCRgd 2 CL:0002477 adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no -Vg9 TCRgd 3 CL:0002478 F4/80-negative adipose macrophage 6 0 CD45+, CD11C+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16- no +subject_id specimen abbreviation full_name parent type_of_match existing_cl_id rank cl_id cl_label score hint_bonus matched contradictions gaps disqualified note +SOULCAP:SC000001 NK Natural Killer Cell Exact 1 CL:0002338 CD56-positive, CD161-positive immature natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+ (1 of 2 alt.) CD45+, CD127-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123-, CD33-/CD64- (no axiom on any alt.) no +SOULCAP:SC000001 NK Natural Killer Cell Exact 2 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 19 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (hi) (1 of 2 alt.) CD34-, CD45+, CD127-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123-, CD33-/CD64- (no axiom on any alt.) no +SOULCAP:SC000001 NK Natural Killer Cell Exact 3 CL:0000939 CD16-positive, CD56-dim natural killer cell, human 19 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (dim) (1 of 2 alt.) CD34-, CD45+, CD127-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123-, CD33-/CD64- (no axiom on any alt.) no +SOULCAP:SC000002 NK2 Natural Killer Cell 2 NK Surface Only (SO) 1 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56:high (hi), CD16- (1 of 2 alt.) CD34-, CD45+, CD127-, CD57-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000002 NK2 Natural Killer Cell 2 NK Surface Only (SO) 2 CL:0002343 decidual natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56:high (hi), CD16- (1 of 2 alt.) CD34-, CD45+, CD127-, CD57-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000002 NK2 Natural Killer Cell 2 NK Surface Only (SO) 3 CL:0002338 CD56-positive, CD161-positive immature natural killer cell, human 19 3 CD14- (1 of 3 alt.), CD34-, CD3-, CD19- CD45+, CD56:high, CD127-, CD16-/CD16:low (no axiom on any alt.), CD57-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000003 CTNK Cytotoxice Natural Killer Cell NK SO and Cytokine 1 CL:0000939 CD16-positive, CD56-dim natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (dim) (1 of 2 alt.), CD16+ CD34-, CD45+, CD127-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000003 CTNK Cytotoxice Natural Killer Cell NK SO and Cytokine 2 CL:0002338 CD56-positive, CD161-positive immature natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+ (1 of 2 alt.) CD45+, CD127-, CD16+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000003 CTNK Cytotoxice Natural Killer Cell NK SO and Cytokine 3 CL:0001073 CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human 17 1 CD34-, CD3-, CD19-, CD56+ (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD45+, CD127-, CD16+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000004 NK1 Natural Killer Cell 1 CTNK SO and TF 1 CL:0000939 CD16-positive, CD56-dim natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (dim), CD16+ CD34-, CD45+, CD127-, CD57-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000004 NK1 Natural Killer Cell 1 CTNK SO and TF 2 CL:0002338 CD56-positive, CD161-positive immature natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+ CD45+, CD127-, CD16+, CD57-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000004 NK1 Natural Killer Cell 1 CTNK SO and TF 3 CL:0001073 CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human 17 1 CD34-, CD3-, CD19-, CD56+ CD14-/CD33-/CD64- (no axiom on any alt.), CD45+, CD127-, CD16+, CD57-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000005 NK3 Natural Killer Cell 3 CTNK TF ONLY 1 CL:0000939 CD16-positive, CD56-dim natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (dim), CD16+ CD34-, CD45+, CD127-, CD57+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000005 NK3 Natural Killer Cell 3 CTNK TF ONLY 2 CL:0002338 CD56-positive, CD161-positive immature natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+ CD45+, CD127-, CD16+, CD57+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000005 NK3 Natural Killer Cell 3 CTNK TF ONLY 3 CL:0001073 CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human 17 1 CD34-, CD3-, CD19-, CD56+ CD14-/CD33-/CD64- (no axiom on any alt.), CD45+, CD127-, CD16+, CD57+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000006 ILCp Innate Lymphoid Cell Progenitor Surface Only (SO) 1 CL:0001073 CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human 15 3 CD3-, CD56+, CD117+ CD45+, CD127+, CD294- no +SOULCAP:SC000006 ILCp Innate Lymphoid Cell Progenitor Surface Only (SO) 2 CL:0001076 NKp46-positive innate lymphoid cell, human 15 3 CD3-, CD56+, CD117+ CD45+, CD127+, CD294- no +SOULCAP:SC000006 ILCp Innate Lymphoid Cell Progenitor Surface Only (SO) 3 CL:0001074 CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human 14 2 CD3-, CD56+, CD117+ CD45+, CD127+, CD294- no +SOULCAP:SC000007 ILC Innate Lymphoid Cell Surface Only (SO) 1 CL:0000989 CD11c-low plasmacytoid dendritic cell 23 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000007 ILC Innate Lymphoid Cell Surface Only (SO) 2 CL:0000992 immature CD11c-low plasmacytoid dendritic cell 23 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000007 ILC Innate Lymphoid Cell Surface Only (SO) 3 CL:0000993 mature CD11c-low plasmacytoid dendritic cell 23 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000008 ILC1 Innate Lymphoid Cell 1 ILC Surface Only (SO) 1 CL:0000989 CD11c-low plasmacytoid dendritic cell 27 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117-, CD294-, CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000008 ILC1 Innate Lymphoid Cell 1 ILC Surface Only (SO) 2 CL:0000992 immature CD11c-low plasmacytoid dendritic cell 27 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117-, CD294-, CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000008 ILC1 Innate Lymphoid Cell 1 ILC Surface Only (SO) 3 CL:0000993 mature CD11c-low plasmacytoid dendritic cell 27 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117-, CD294-, CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000009 ILC2 Innate Lymphoid Cell 2 ILC Surface Only (SO) 1 CL:0002029 Fc-epsilon RIalpha-low mast cell progenitor 29 1 CD14- (1 of 3 alt.), CD3-, CD19-, CD45+, CD3-, CD56-, CD117:low (dim) (1 of 2 alt.) CD34-, CD127+, CD294+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000009 ILC2 Innate Lymphoid Cell 2 ILC Surface Only (SO) 2 CL:0000989 CD11c-low plasmacytoid dendritic cell 27 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117:low/CD117- (no axiom on any alt.), CD294+, CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000009 ILC2 Innate Lymphoid Cell 2 ILC Surface Only (SO) 3 CL:0000992 immature CD11c-low plasmacytoid dendritic cell 27 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117:low/CD117- (no axiom on any alt.), CD294+, CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000010 ILC3 Innate Lymphoid Cell 3 ILC Surface Only (SO) 1 CL:0002029 Fc-epsilon RIalpha-low mast cell progenitor 29 1 CD14- (1 of 3 alt.), CD3-, CD19-, CD45+, CD3-, CD56- (1 of 2 alt.), CD117+ (dim) CD34-, CD127+, CD294-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000010 ILC3 Innate Lymphoid Cell 3 ILC Surface Only (SO) 2 CL:0002344 CD56-negative, CD161-positive immature natural killer cell, human 29 1 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD3-, CD56- (1 of 2 alt.), CD117+ CD45+, CD127+, CD294-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000010 ILC3 Innate Lymphoid Cell 3 ILC Surface Only (SO) 3 CL:0000989 CD11c-low plasmacytoid dendritic cell 27 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD56- (1 of 2 alt.), CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117+, CD294-, CD15-/CD66B- (no axiom on any alt.), CD123- no +SOULCAP:SC000011 cDC Conventional Dendritic Cell Exact 1 CL:0001057 myeloid dendritic cell, human 24 2 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD14-, CD11C:high (hi), CD3-, CD19-, CD56- CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), HLA-DR+, CD127- no +SOULCAP:SC000011 cDC Conventional Dendritic Cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 21 1 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD14-, CD3-, CD19-, CD56-, CD127- CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), CD11C:high, HLA-DR+ no +SOULCAP:SC000011 cDC Conventional Dendritic Cell Exact 3 CL:0000782 myeloid dendritic cell 20 2 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD11C:high (hi), CD3-, CD19-, CD56- CD14-, CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), HLA-DR+, CD127- no +SOULCAP:SC000012 cDC1 Conventional Dendritic Cell 1 DCM Exact 1 CL:0001057 myeloid dendritic cell, human 24 2 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD14-, CD11C:high (hi), CD3-, CD19-, CD56- CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), HLA-DR+, CD1C-, CD141+, CD127-, CD172A-, FCER1A- no +SOULCAP:SC000012 cDC1 Conventional Dendritic Cell 1 DCM Exact 2 CL:0002394 CD141-positive myeloid dendritic cell 24 2 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD11C:high (hi), CD141+, CD3-, CD19-, CD56- CD14-, CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), HLA-DR+, CD1C-, CD127-, CD172A-, FCER1A- no +SOULCAP:SC000012 cDC1 Conventional Dendritic Cell 1 DCM Exact 3 CL:0002000 Kit-positive erythroid progenitor cell 21 1 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD14-, CD3-, CD19-, CD56-, CD127- CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), CD11C:high, HLA-DR+, CD1C-, CD141+, CD172A-, FCER1A- no +SOULCAP:SC000013 cDC2 Conventional Dendritic Cell 2 DCM Exact 1 CL:0001057 myeloid dendritic cell, human 24 2 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD14-, CD11C:high (hi), CD3-, CD19-, CD56- CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), HLA-DR+, CD1C+, CD141:low/CD141- (no axiom on any alt.), CD127-, CD172A+, FCER1A:low/FCER1A- (no axiom on any alt.) no +SOULCAP:SC000013 cDC2 Conventional Dendritic Cell 2 DCM Exact 2 CL:0002399 CD1c-positive myeloid dendritic cell 24 2 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD11C:high (hi), CD1C+, CD3-, CD19-, CD56- CD14-, CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), HLA-DR+, CD141:low/CD141- (no axiom on any alt.), CD127-, CD172A+, FCER1A:low/FCER1A- (no axiom on any alt.) no +SOULCAP:SC000013 cDC2 Conventional Dendritic Cell 2 DCM Exact 3 CL:0002000 Kit-positive erythroid progenitor cell 21 1 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD14-, CD3-, CD19-, CD56-, CD127- CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), CD11C:high, HLA-DR+, CD1C+, CD141:low/CD141- (no axiom on any alt.), CD172A+, FCER1A:low/FCER1A- (no axiom on any alt.) no +SOULCAP:SC000014 PBMC pDC Peripheral Dendritic Cell Exact 1 CL:0000991 CD11c-negative plasmacytoid dendritic cell 18 2 CD3-, CD45+, CD303+ (1 of 3 alt.), CD56-, CD19- CD33:low/CD33+/CD123:high (no axiom on any alt.), CD127-, CD15-/CD66B- (no axiom on any alt.), CD14-, CD16- no +SOULCAP:SC000014 PBMC pDC Peripheral Dendritic Cell Exact 2 CL:0000994 immature CD11c-negative plasmacytoid dendritic cell 18 2 CD3-, CD45+, CD303+ (1 of 3 alt.), CD56-, CD19- CD33:low/CD33+/CD123:high (no axiom on any alt.), CD127-, CD15-/CD66B- (no axiom on any alt.), CD14-, CD16- no +SOULCAP:SC000014 PBMC pDC Peripheral Dendritic Cell Exact 3 CL:0000996 mature CD11c-negative plasmacytoid dendritic cell 18 2 CD3-, CD45+, CD303+ (1 of 3 alt.), CD56-, CD19- CD33:low/CD33+/CD123:high (no axiom on any alt.), CD127-, CD15-/CD66B- (no axiom on any alt.), CD14-, CD16- no +SOULCAP:SC000015 PBMC Basophil Basophil Exact 1 CL:0000614 basophilic myelocyte 18 1 CD3-, CD33+ (1 of 2 alt.), CD193+ (hi) (1 of 4 alt.), CD56-, CD19-, CD16- CD15-/CD66B- (all alt. conflict) CD45+, CD127-, CD14-, FCER1A+, HLA-DR- no +SOULCAP:SC000015 PBMC Basophil Basophil Exact 2 CL:0002008 CD34-positive, CD38-positive eosinophil progenitor cell 18 0 CD3-, CD45+, CD123+ (1 of 2 alt.), CD56-, CD19-, CD14- CD193+/FCER1A+/HLA-DR-/CD303- (no axiom on any alt.), CD127-, CD15-/CD66B- (no axiom on any alt.), CD16-, FCER1A+, HLA-DR- no +SOULCAP:SC000015 PBMC Basophil Basophil Exact 3 CL:0000043 mature basophil 17 1 CD3-, CD123+ (hi) (1 of 2 alt.), CD193+ (hi) (1 of 4 alt.), CD56-, CD19- CD45+, CD127-, CD15-/CD66B- (no axiom on any alt.), CD14-, CD16-, FCER1A+, HLA-DR- no +SOULCAP:SC000016 WB Basophil Basophil Exact 1 CL:0000043 mature basophil 17 1 CD3-, CD193+ (hi), CD123+ (hi), CD56-, CD19- CD15-/CD66B- (no axiom on any alt.), CD45+, CD127- no +SOULCAP:SC000016 WB Basophil Basophil Exact 2 CL:0000767 basophil 17 1 CD3-, CD193+ (hi), CD123+ (hi), CD56-, CD19- CD15-/CD66B- (no axiom on any alt.), CD45+, CD127- no +SOULCAP:SC000016 WB Basophil Basophil Exact 3 CL:0000768 immature basophil 17 1 CD3-, CD193+ (hi), CD123+ (hi), CD56-, CD19- CD15-/CD66B- (no axiom on any alt.), CD45+, CD127- no +SOULCAP:SC000017 WB and PBMC Mono Monocyte Exact CL:0000576 invalid expression in Required exclusion: unexpected ')' in group +SOULCAP:SC000018 WB and PBMC CMo Classical Monocyte Mono Exact CL:0000860 invalid expression in Required exclusion: unexpected ')' in group +SOULCAP:SC000019 WB and PBMC NCMo Non-classical Monocyte Mono Exact CL:0000875 invalid expression in Required exclusion: unexpected ')' in group +SOULCAP:SC000020 WB and PBMC IntMo Intermediate Monocyte Mono Exact CL:0002393 invalid expression in Required exclusion: unexpected ')' in group +SOULCAP:SC000021 WB and PBMC Neut Neutrophil Exact 1 CL:0000582 neutrophilic metamyelocyte 18 2 CD3-, CD56-, CD66B+ (1 of 2 alt.), CD19-, CD33+ (1 of 2 alt.) CD14:low/CD14- (no axiom on any alt.), CD123-, CD45+, CD193-, CD16:high, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.) no +SOULCAP:SC000021 WB and PBMC Neut Neutrophil Exact 2 CL:0001021 CD34-positive, CD38-positive common lymphoid progenitor 18 0 CD3-, CD56-, CD14- (1 of 2 alt.), CD45+, CD19- CD123-, CD15:high/CD66B+ (no axiom on any alt.), CD193-, CD16:high, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD64-/CD33+ (no axiom on any alt.) no +SOULCAP:SC000021 WB and PBMC Neut Neutrophil Exact 3 CL:0001057 myeloid dendritic cell, human 18 0 CD3-, CD56-, CD14- (1 of 2 alt.), CD123-, CD19- CD45+, CD15:high/CD66B+ (no axiom on any alt.), CD193-, CD16:high, HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD64-/CD33+ (no axiom on any alt.) no +SOULCAP:SC000022 WB Eos Eosinophil Exact 1 CL:0000612 eosinophilic myelocyte 26 2 CD3-, CD56-, CD66B+ (1 of 2 alt.), CD193+, CD16-, CD19-, CD33+ (1 of 2 alt.) CD14:low/CD14- (no axiom on any alt.), CD123-, CD45+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.) no +SOULCAP:SC000022 WB Eos Eosinophil Exact 2 CL:0000041 mature eosinophil 20 2 CD3-, CD56-, CD66B+ (1 of 2 alt.), CD193+, CD19- CD14:low/CD14- (no axiom on any alt.), CD123-, CD45+, CD16-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD64-/CD33+ (no axiom on any alt.) no +SOULCAP:SC000022 WB Eos Eosinophil Exact 3 CL:0000580 neutrophilic myelocyte 20 0 CD3-, CD56-, CD66B+ (1 of 2 alt.), CD16-, CD19-, CD33+ (1 of 2 alt.) CD14:low/CD14- (no axiom on any alt.), CD123-, CD45+, CD193+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.) no +SOULCAP:SC000023 B cell B cell Exact 1 CL:0000819 B-1 B cell 15 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000023 B cell B cell Exact 2 CL:0000820 B-1a B cell 15 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000023 B cell B cell Exact 3 CL:0000821 B-1b B cell 15 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000024 ASC Antibody Secreting Cell Surface Only (SO) 1 CL:0000949 IgD plasmablast 18 0 CD3-, CD19+, CD27+ (hi) (1 of 2 alt.), CD38:high (hi), CD20- (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000024 ASC Antibody Secreting Cell Surface Only (SO) 2 CL:0000950 IgE plasmablast 18 0 CD3-, CD19+, CD27+ (hi) (1 of 2 alt.), CD38:high (hi), CD20- (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000024 ASC Antibody Secreting Cell Surface Only (SO) 3 CL:0000980 plasmablast 18 0 CD3-, CD19+, CD27+ (hi) (1 of 2 alt.), CD38:high (hi), CD20- (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000025 PB Plasmablast ASC Surface Only (SO) 1 CL:0000949 IgD plasmablast 23 1 CD3-, CD19+, CD27+ (hi) (1 of 2 alt.), CD38:high (hi), CD138-, CD20- (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000025 PB Plasmablast ASC Surface Only (SO) 2 CL:0000950 IgE plasmablast 23 1 CD3-, CD19+, CD27+ (hi) (1 of 2 alt.), CD38:high (hi), CD138-, CD20- (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000025 PB Plasmablast ASC Surface Only (SO) 3 CL:0000980 plasmablast 23 1 CD3-, CD19+, CD27+ (hi) (1 of 2 alt.), CD38:high (hi), CD138-, CD20- (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000026 PC Plasma Cell ASC Surface Only (SO) 1 CL:0002047 fraction B precursor B cell 13 1 CD3-, CD45+, CD19+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27+/CD27:high (no axiom on any alt.), CD38:high, CD138+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123-, CD20- no +SOULCAP:SC000026 PC Plasma Cell ASC Surface Only (SO) 2 CL:0002049 fraction C precursor B cell 13 1 CD3-, CD45+, CD19+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27+/CD27:high (no axiom on any alt.), CD38:high, CD138+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123-, CD20- no +SOULCAP:SC000026 PC Plasma Cell ASC Surface Only (SO) 3 CL:0002050 fraction C' precursor B cell 13 1 CD3-, CD45+, CD19+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27+/CD27:high (no axiom on any alt.), CD38:high, CD138+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123-, CD20- no +SOULCAP:SC000027 Transitional Transitional B cell Exact no qualified markers found +SOULCAP:SC000028 T1/T2 B Transitonal B cell 1 and 2 1 CL:0000818 transitional stage B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD38:high (hi) (1 of 2 alt.), CD24:high (hi), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000028 T1/T2 B Transitonal B cell 1 and 2 2 CL:0000958 T1 B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD38:high (hi) (1 of 2 alt.), CD24:high (hi), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000028 T1/T2 B Transitonal B cell 1 and 2 3 CL:0000959 T2 B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD38:high (hi) (1 of 2 alt.), CD24:high (hi), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000029 Mature B Mature B cell Exact 1 CL:0000961 Bm1 B cell 19 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000029 Mature B Mature B cell Exact 2 CL:0002102 CD38-negative naive B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000029 Mature B Mature B cell Exact 3 CL:0002109 B220-positive CD38-positive naive B cell 19 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38:low/CD38- (no axiom on any alt.), CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000030 T3 Transitional B cell 3 Mature B Exact 1 CL:0000961 Bm1 B cell 19 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD24+, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000030 T3 Transitional B cell 3 Mature B Exact 2 CL:0002102 CD38-negative naive B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24+, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000030 T3 Transitional B cell 3 Mature B Exact 3 CL:0002109 B220-positive CD38-positive naive B cell 19 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38:low/CD38-/CD10:low (no axiom on any alt.), CD24+, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000031 Naive Naive B cell Mature B Exact 1 CL:0002102 CD38-negative naive B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24-, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000031 Naive Naive B cell Mature B Exact 2 CL:0002109 B220-positive CD38-positive naive B cell 20 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38:low/CD38-/CD10- (no axiom on any alt.), CD24-, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000031 Naive Naive B cell Mature B Exact 3 CL:0002110 B220-low CD38-positive naive B cell 20 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38:low/CD38-/CD10- (no axiom on any alt.), CD24-, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000032 BDN Double Negative B cells Mature B Exact 1 CL:0002102 CD38-negative naive B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24-, IGD-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000032 BDN Double Negative B cells Mature B Exact 2 CL:0000961 Bm1 B cell 18 0 CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD24-, IGD-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000032 BDN Double Negative B cells Mature B Exact 3 CL:0002109 B220-positive CD38-positive naive B cell 18 0 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38:low/CD38-/CD10- (no axiom on any alt.), CD24-, IGD-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000033 BDN1 Double Negative B cell 1 BDN Exact 1 CL:0000961 Bm1 B cell 23 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 3 alt.), CD21+, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD24+, IGD-, CD11C-, CD185+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000033 BDN1 Double Negative B cell 1 BDN Exact 2 CL:0002055 CD38-negative immature B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD38- (1 of 3 alt.), CD21+ (dim), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD24+, IGD-, CD11C-, CD185+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000033 BDN1 Double Negative B cell 1 BDN Exact 3 CL:0002102 CD38-negative naive B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24+, IGD-, CD21+, CD11C-, CD185+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000034 BDN2 Double Negative B cell 2 BDN Exact 1 CL:0002102 CD38-negative naive B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24-, IGD-, CD21-, CD11C+, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000034 BDN2 Double Negative B cell 2 BDN Exact 2 CL:0002109 B220-positive CD38-positive naive B cell 19 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38:low/CD38-/CD10- (no axiom on any alt.), CD24-, IGD-, CD21-, CD11C+, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000034 BDN2 Double Negative B cell 2 BDN Exact 3 CL:0002110 B220-low CD38-positive naive B cell 19 1 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38:low/CD38-/CD10- (no axiom on any alt.), CD24-, IGD-, CD21-, CD11C+, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000035 BDN3 Double Negative B cell 3 BDN Exact 1 CL:0002102 CD38-negative naive B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24+, IGD-, CD21-, CD11C-, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000035 BDN3 Double Negative B cell 3 BDN Exact 2 CL:0000958 T1 B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD24+ (hi), CD21-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.), IGD-, CD11C-, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000035 BDN3 Double Negative B cell 3 BDN Exact 3 CL:0002109 B220-positive CD38-positive naive B cell 19 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38:low/CD38-/CD10- (no axiom on any alt.), CD24+, IGD-, CD21-, CD11C-, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000036 BDN4 Double Negative B cell 4 BDN Exact 1 CL:0000961 Bm1 B cell 23 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 3 alt.), CD21+, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD24+, IGD-, CD11C-, CD185+, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000036 BDN4 Double Negative B cell 4 BDN Exact 2 CL:0002055 CD38-negative immature B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD38- (1 of 3 alt.), CD21+ (dim), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD24+, IGD-, CD11C-, CD185+, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000036 BDN4 Double Negative B cell 4 BDN Exact 3 CL:0002102 CD38-negative naive B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24+, IGD-, CD21+, CD11C-, CD185+, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000037 Bmem Memory B cell Exact 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000037 Bmem Memory B cell Exact 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000037 Bmem Memory B cell Exact 3 CL:0002108 CD38-negative IgG memory B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000038 IgD only IgD only Memory B cell Bmem Exact 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD+, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000038 IgD only IgD only Memory B cell Bmem Exact 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD+, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000038 IgD only IgD only Memory B cell Bmem Exact 3 CL:0002108 CD38-negative IgG memory B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD+, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000039 Unswitched Unswitched Memory B cell Bmem Exact 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 25 3 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD+, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000039 Unswitched Unswitched Memory B cell Bmem Exact 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 25 3 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD+, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000039 Unswitched Unswitched Memory B cell Bmem Exact 3 CL:0002111 CD38-negative unswitched memory B cell 21 3 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD+, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000040 IgM only IgM-only Memory B cell Bmem Exact 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000040 IgM only IgM-only Memory B cell Bmem Exact 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000040 IgM only IgM-only Memory B cell Bmem Exact 3 CL:0002108 CD38-negative IgG memory B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000041 Switched Switched Memory B cell Bmem Exact 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 25 3 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000041 Switched Switched Memory B cell Bmem Exact 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 25 3 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000041 Switched Switched Memory B cell Bmem Exact 3 CL:0002111 CD38-negative unswitched memory B cell 21 3 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000042 IgA IgA-Class Switched B cell Switched Surface Only (SO) 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA+, IGG-, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000042 IgA IgA-Class Switched B cell Switched Surface Only (SO) 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA+, IGG-, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000042 IgA IgA-Class Switched B cell Switched Surface Only (SO) 3 CL:0002118 CD38-negative IgG-negative class switched memory B cell 21 3 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM-, IGA+, IGG-, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000043 IgG IgG-Class Switched B cell Switched Surface Only (SO) 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA-, IGG+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000043 IgG IgG-Class Switched B cell Switched Surface Only (SO) 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA-, IGG+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000043 IgG IgG-Class Switched B cell Switched Surface Only (SO) 3 CL:0002118 CD38-negative IgG-negative class switched memory B cell 22 4 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM-, IGA-, IGG+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000044 IgE IgE-Class Switched B cell Switched Surface Only (SO) 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA-, IGG-, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000044 IgE IgE-Class Switched B cell Switched Surface Only (SO) 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA-, IGG-, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000044 IgE IgE-Class Switched B cell Switched Surface Only (SO) 3 CL:0002118 CD38-negative IgG-negative class switched memory B cell 21 3 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM-, IGA-, IGG-, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no +SOULCAP:SC000045 T cell T lymphocyte Exact 1 CL:0002467 Gr1-high myeloid suppressor cell 7 1 CD45+, CD11C:not:high (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000045 T cell T lymphocyte Exact 2 CL:0000097 mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000045 T cell T lymphocyte Exact 3 CL:0000484 connective tissue type mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000046 CD56+ T cell CD56+ T cell T cell Exact 1 CL:0002467 Gr1-high myeloid suppressor cell 7 1 CD45+, CD11C:not:high (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000046 CD56+ T cell CD56+ T cell T cell Exact 2 CL:0000097 mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000046 CD56+ T cell CD56+ T cell T cell Exact 3 CL:0000484 connective tissue type mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000047 CD56+ CD4 T cell CD56+ CD4 T cell CD4+ T cell Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000047 CD56+ CD4 T cell CD56+ CD4 T cell CD4+ T cell Exact 2 CL:0002430 CD4-intermediate, CD8-positive double-positive thymocyte 9 1 CD4+ (dim), CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000047 CD56+ CD4 T cell CD56+ CD4 T cell CD4+ T cell Exact 3 CL:0002431 CD4-positive, CD8-intermediate double-positive thymocyte 9 1 CD4+, CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000048 CD56+ CD8 T cell CD56+ CD8 T cell CD8+ T cell Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 14 2 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000048 CD56+ CD8 T cell CD56+ CD8 T cell CD8+ T cell Exact 2 CL:0001050 effector CD8-positive, alpha-beta T cell 14 2 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000048 CD56+ CD8 T cell CD56+ CD8 T cell CD8+ T cell Exact 3 CL:0001203 CD8-positive, alpha-beta memory T cell, CD45RO-positive 14 2 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000049 CD56+ TCRab CD56+ alpha/beta T cell TCRab Exact 1 CL:0002467 Gr1-high myeloid suppressor cell 7 1 CD45+, CD11C:not:high (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000049 CD56+ TCRab CD56+ alpha/beta T cell TCRab Exact 2 CL:0000097 mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000049 CD56+ TCRab CD56+ alpha/beta T cell TCRab Exact 3 CL:0000484 connective tissue type mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000050 CD56+ CD4+ TCRab CD56+ CD4+ alpha/beta T cell CD4+ TCRab T cell Exact 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000050 CD56+ CD4+ TCRab CD56+ CD4+ alpha/beta T cell CD4+ TCRab T cell Exact 2 CL:0001044 effector CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000050 CD56+ CD4+ TCRab CD56+ CD4+ alpha/beta T cell CD4+ TCRab T cell Exact 3 CL:0001046 memory CCR4-positive regulatory T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000051 CD56+ CD8+ TCRab CD56+ CD8+ alpha/beta T cell CD8+ TCRab T cell Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000051 CD56+ CD8+ TCRab CD56+ CD8+ alpha/beta T cell CD8+ TCRab T cell Exact 2 CL:0001050 effector CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000051 CD56+ CD8+ TCRab CD56+ CD8+ alpha/beta T cell CD8+ TCRab T cell Exact 3 CL:0001203 CD8-positive, alpha-beta memory T cell, CD45RO-positive 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000052 CD56+ CD4+/CD8+ TCRab CD56+ CD4+/CD8+ alpha/beta T cell CD4+/CD8+ TCRab T cell Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000052 CD56+ CD4+/CD8+ TCRab CD56+ CD4+/CD8+ alpha/beta T cell CD4+/CD8+ TCRab T cell Exact 2 CL:0000809 double-positive, alpha-beta thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000052 CD56+ CD4+/CD8+ TCRab CD56+ CD4+/CD8+ alpha/beta T cell CD4+/CD8+ TCRab T cell Exact 3 CL:0002427 resting double-positive thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000053 CD56+ CD4-/CD8- TCRab CD56+ CD4-/CD8- alpha/beta T cell CD4-/CD8- TCRab T cell Exact 1 CL:0000803 CD4-negative CD8-negative gamma-delta intraepithelial T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000053 CD56+ CD4-/CD8- TCRab CD56+ CD4-/CD8- alpha/beta T cell CD4-/CD8- TCRab T cell Exact 2 CL:0000924 CD4-negative, CD8-negative type I NK T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000053 CD56+ CD4-/CD8- TCRab CD56+ CD4-/CD8- alpha/beta T cell CD4-/CD8- TCRab T cell Exact 3 CL:0000928 activated CD4-negative, CD8-negative type I NK T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000054 CD56+ TCRgd CD56+ gamma/delta T cell TCRgd Exact 1 CL:0002467 Gr1-high myeloid suppressor cell 7 1 CD45+, CD11C:not:high (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000054 CD56+ TCRgd CD56+ gamma/delta T cell TCRgd Exact 2 CL:0000097 mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000054 CD56+ TCRgd CD56+ gamma/delta T cell TCRgd Exact 3 CL:0000484 connective tissue type mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000055 CD56+ CD4+ TCRgd CD56+ CD4+ gamma/delta T cell CD4+ TCRgd T cell Exact 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000055 CD56+ CD4+ TCRgd CD56+ CD4+ gamma/delta T cell CD4+ TCRgd T cell Exact 2 CL:0001044 effector CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000055 CD56+ CD4+ TCRgd CD56+ CD4+ gamma/delta T cell CD4+ TCRgd T cell Exact 3 CL:0001046 memory CCR4-positive regulatory T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000056 CD56+ CD8+ TCRgd CD56+ CD8+ gamma/delta T cell CD8+ TCRgd T cell Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000056 CD56+ CD8+ TCRgd CD56+ CD8+ gamma/delta T cell CD8+ TCRgd T cell Exact 2 CL:0001050 effector CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000056 CD56+ CD8+ TCRgd CD56+ CD8+ gamma/delta T cell CD8+ TCRgd T cell Exact 3 CL:0001203 CD8-positive, alpha-beta memory T cell, CD45RO-positive 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000057 CD56+ CD4+/CD8+ TCRgd CD56+ CD4+/CD8+ gamma/delta T cell CD4+/CD8+ TCRgd Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000057 CD56+ CD4+/CD8+ TCRgd CD56+ CD4+/CD8+ gamma/delta T cell CD4+/CD8+ TCRgd Exact 2 CL:0000809 double-positive, alpha-beta thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000057 CD56+ CD4+/CD8+ TCRgd CD56+ CD4+/CD8+ gamma/delta T cell CD4+/CD8+ TCRgd Exact 3 CL:0002427 resting double-positive thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000058 CD56+ CD8-/CD8- TCRgd CD56+ CD8-/CD8- gamma/delta T cell CD4-/CD8- TCRgd Exact 1 CL:0000803 CD4-negative CD8-negative gamma-delta intraepithelial T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000058 CD56+ CD8-/CD8- TCRgd CD56+ CD8-/CD8- gamma/delta T cell CD4-/CD8- TCRgd Exact 2 CL:0000924 CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000058 CD56+ CD8-/CD8- TCRgd CD56+ CD8-/CD8- gamma/delta T cell CD4-/CD8- TCRgd Exact 3 CL:0000928 activated CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000059 iNKT Invariant Natural Killer T cell T cell Exact invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000060 TCRab alpha/beta T cell T cell Exact 1 CL:0002467 Gr1-high myeloid suppressor cell 7 1 CD45+, CD11C:not:high (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000060 TCRab alpha/beta T cell T cell Exact 2 CL:0000097 mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000060 TCRab alpha/beta T cell T cell Exact 3 CL:0000484 connective tissue type mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000061 TCRgd gamma/delta T cell T cell Exact 1 CL:0002467 Gr1-high myeloid suppressor cell 7 1 CD45+, CD11C:not:high (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000061 TCRgd gamma/delta T cell T cell Exact 2 CL:0000097 mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000061 TCRgd gamma/delta T cell T cell Exact 3 CL:0000484 connective tissue type mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000062 CD4+ T cell alpha/beta and gamma/delta CD4+ T cells T cell Exact 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000062 CD4+ T cell alpha/beta and gamma/delta CD4+ T cells T cell Exact 2 CL:0001044 effector CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000062 CD4+ T cell alpha/beta and gamma/delta CD4+ T cells T cell Exact 3 CL:0001046 memory CCR4-positive regulatory T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000063 CD8+ T cell alpha/beta and gamma/delta CD8+ T cells T cell Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000063 CD8+ T cell alpha/beta and gamma/delta CD8+ T cells T cell Exact 2 CL:0001050 effector CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000063 CD8+ T cell alpha/beta and gamma/delta CD8+ T cells T cell Exact 3 CL:0001203 CD8-positive, alpha-beta memory T cell, CD45RO-positive 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000064 CD4+/CD8+ T cell alpha/beta and gamma/delta CD4+ and CD8+ T cells T cell Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000064 CD4+/CD8+ T cell alpha/beta and gamma/delta CD4+ and CD8+ T cells T cell Exact 2 CL:0000809 double-positive, alpha-beta thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000064 CD4+/CD8+ T cell alpha/beta and gamma/delta CD4+ and CD8+ T cells T cell Exact 3 CL:0002427 resting double-positive thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000065 CD4-/CD8- T cell alpha/beta and gamma/delta CD4- and CD8- T cells T cell Exact 1 CL:0000803 CD4-negative CD8-negative gamma-delta intraepithelial T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000065 CD4-/CD8- T cell alpha/beta and gamma/delta CD4- and CD8- T cells T cell Exact 2 CL:0000924 CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000065 CD4-/CD8- T cell alpha/beta and gamma/delta CD4- and CD8- T cells T cell Exact 3 CL:0000928 activated CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000066 CD4+ TCRab T cell CD4+ alpha/beta T cell TCRab Exact 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000066 CD4+ TCRab T cell CD4+ alpha/beta T cell TCRab Exact 2 CL:0001044 effector CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000066 CD4+ TCRab T cell CD4+ alpha/beta T cell TCRab Exact 3 CL:0001046 memory CCR4-positive regulatory T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000067 CD8+ TCRab T cell CD8+ alpha/beta T cell TCRab Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000067 CD8+ TCRab T cell CD8+ alpha/beta T cell TCRab Exact 2 CL:0001050 effector CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000067 CD8+ TCRab T cell CD8+ alpha/beta T cell TCRab Exact 3 CL:0001203 CD8-positive, alpha-beta memory T cell, CD45RO-positive 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000068 CD4+/CD8+ TCRab T cell CD4+ and CD8+ alpha/beta T cell TCRab Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000068 CD4+/CD8+ TCRab T cell CD4+ and CD8+ alpha/beta T cell TCRab Exact 2 CL:0000809 double-positive, alpha-beta thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000068 CD4+/CD8+ TCRab T cell CD4+ and CD8+ alpha/beta T cell TCRab Exact 3 CL:0002427 resting double-positive thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000069 CD4-/CD8- TCRab T cell CD4- and CD8- alpha/beta T cell TCRab Exact 1 CL:0000803 CD4-negative CD8-negative gamma-delta intraepithelial T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000069 CD4-/CD8- TCRab T cell CD4- and CD8- alpha/beta T cell TCRab Exact 2 CL:0000924 CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000069 CD4-/CD8- TCRab T cell CD4- and CD8- alpha/beta T cell TCRab Exact 3 CL:0000928 activated CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000070 CD4+ TCRgd T cell CD4+ gamma/delta T cell TCRgd Exact 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000070 CD4+ TCRgd T cell CD4+ gamma/delta T cell TCRgd Exact 2 CL:0001044 effector CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000070 CD4+ TCRgd T cell CD4+ gamma/delta T cell TCRgd Exact 3 CL:0001046 memory CCR4-positive regulatory T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000071 CD8+ TCRgd T cell CD8+ gamma/delta T cell TCRgd Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000071 CD8+ TCRgd T cell CD8+ gamma/delta T cell TCRgd Exact 2 CL:0001050 effector CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000071 CD8+ TCRgd T cell CD8+ gamma/delta T cell TCRgd Exact 3 CL:0001203 CD8-positive, alpha-beta memory T cell, CD45RO-positive 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000072 CD4+/CD8+ TCRgd CD4+/CD8+ gamma/delta T cell TCRgd Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000072 CD4+/CD8+ TCRgd CD4+/CD8+ gamma/delta T cell TCRgd Exact 2 CL:0000809 double-positive, alpha-beta thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000072 CD4+/CD8+ TCRgd CD4+/CD8+ gamma/delta T cell TCRgd Exact 3 CL:0002427 resting double-positive thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000073 CD4-/CD8- TCRgd CD4-/CD8- gamma/delta T cell TCRgd Exact 1 CL:0000803 CD4-negative CD8-negative gamma-delta intraepithelial T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000073 CD4-/CD8- TCRgd CD4-/CD8- gamma/delta T cell TCRgd Exact 2 CL:0000924 CD4-negative, CD8-negative type I NK T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000073 CD4-/CD8- TCRgd CD4-/CD8- gamma/delta T cell TCRgd Exact 3 CL:0000928 activated CD4-negative, CD8-negative type I NK T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000074 MAIT Mucosal-associated Invariant T cell T Lymph Exact invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000075 Conv TCRab T Lymph Exact invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000076 CD4+ Conv TCRab ConT TCRab Exact invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000077 CD8+ Conv TCRab ConT TCRab Exact invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000078 CD4+/CD8+ Conv TCRab ConT TCRab Exact invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000079 CD4-/CD8- Conv TCRab ConT TCRab Exact invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000080 Tcm Central memory alpha/beta and gamma/delta T cells T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000080 Tcm Central memory alpha/beta and gamma/delta T cells T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000080 Tcm Central memory alpha/beta and gamma/delta T cells T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000081 CD4+ Tcm CD4+ central memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000081 CD4+ Tcm CD4+ central memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000081 CD4+ Tcm CD4+ central memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000082 CD4+ TCRab Tcm CD4+ central memory alpha/beta T cell CD4+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000082 CD4+ TCRab Tcm CD4+ central memory alpha/beta T cell CD4+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000082 CD4+ TCRab Tcm CD4+ central memory alpha/beta T cell CD4+ TCRab T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000083 CD4+ TCRgd Tcm CD4+ central memory gamma/delta T cell CD4+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000083 CD4+ TCRgd Tcm CD4+ central memory gamma/delta T cell CD4+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000083 CD4+ TCRgd Tcm CD4+ central memory gamma/delta T cell CD4+ TCRgd T cell 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000084 CD8+ Tcm CD8+ central memory T cell CD8+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000084 CD8+ Tcm CD8+ central memory T cell CD8+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000084 CD8+ Tcm CD8+ central memory T cell CD8+ T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000085 CD8+ TCRab Tcm CD8+ central memory alpha/beta T cell CD8+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000085 CD8+ TCRab Tcm CD8+ central memory alpha/beta T cell CD8+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000085 CD8+ TCRab Tcm CD8+ central memory alpha/beta T cell CD8+ TCRab T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000086 CD8+ TCRgd Tcm CD8+ central memory gamma/delta T cell CD8+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000086 CD8+ TCRgd Tcm CD8+ central memory gamma/delta T cell CD8+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000086 CD8+ TCRgd Tcm CD8+ central memory gamma/delta T cell CD8+ TCRgd T cell 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000087 Tnaive Naive alpha/beta and gamma/delta T cell T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000087 Tnaive Naive alpha/beta and gamma/delta T cell T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000087 Tnaive Naive alpha/beta and gamma/delta T cell T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000088 CD4+ Tnaive CD4+ Naive alpha/beta and gamma/delta T cell CD4+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000088 CD4+ Tnaive CD4+ Naive alpha/beta and gamma/delta T cell CD4+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000088 CD4+ Tnaive CD4+ Naive alpha/beta and gamma/delta T cell CD4+ T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000089 CD4+ TCRab Tnaive CD4+ naive alpha/beta T cell CD4 TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000089 CD4+ TCRab Tnaive CD4+ naive alpha/beta T cell CD4 TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000089 CD4+ TCRab Tnaive CD4+ naive alpha/beta T cell CD4 TCRab T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000090 CD4+ TCRgd Tnaive CD4+ naive gamma/delta T cell CD4+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000090 CD4+ TCRgd Tnaive CD4+ naive gamma/delta T cell CD4+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000090 CD4+ TCRgd Tnaive CD4+ naive gamma/delta T cell CD4+ TCRgd T cell 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000091 CD8+ Tnaive CD8+ naive alpha/beta and gamma/delta T cell CD8+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000091 CD8+ Tnaive CD8+ naive alpha/beta and gamma/delta T cell CD8+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000091 CD8+ Tnaive CD8+ naive alpha/beta and gamma/delta T cell CD8+ T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000092 CD8+ TCRab Tnaive CD8+ naive alpha/beta T cell CD8+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000092 CD8+ TCRab Tnaive CD8+ naive alpha/beta T cell CD8+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000092 CD8+ TCRab Tnaive CD8+ naive alpha/beta T cell CD8+ TCRab T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000093 CD8+ TCRgd Tnaive CD8+ naive gamma/delta T cell CD8+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000093 CD8+ TCRgd Tnaive CD8+ naive gamma/delta T cell CD8+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000093 CD8+ TCRgd Tnaive CD8+ naive gamma/delta T cell CD8+ TCRgd T cell 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000094 Tem Effector memory T cell T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000094 Tem Effector memory T cell T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000094 Tem Effector memory T cell T cell Exact 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000095 CD4+ Tem CD4+ effector memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000095 CD4+ Tem CD4+ effector memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000095 CD4+ Tem CD4+ effector memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000096 CD4+ TCRab Tem CD4+ effector memory alpha/beta T cell CD4+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000096 CD4+ TCRab Tem CD4+ effector memory alpha/beta T cell CD4+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000096 CD4+ TCRab Tem CD4+ effector memory alpha/beta T cell CD4+ TCRab T cell Exact 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000097 CD4+ TCRgd Tem CD4+ effector memory gamma/delta T cell CD4+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000097 CD4+ TCRgd Tem CD4+ effector memory gamma/delta T cell CD4+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000097 CD4+ TCRgd Tem CD4+ effector memory gamma/delta T cell CD4+ TCRgd T cell 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000098 CD8+ Tem CD8+ effector memory T cell CD8+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000098 CD8+ Tem CD8+ effector memory T cell CD8+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000098 CD8+ Tem CD8+ effector memory T cell CD8+ T cell Exact 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000099 CD8+ TCRab Tem CD8+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000099 CD8+ TCRab Tem CD8+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000099 CD8+ TCRab Tem CD8+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000100 CD8+ TCRgd Tem CD8+ effector memory gamma/delta T cell CD8+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000100 CD8+ TCRgd Tem CD8+ effector memory gamma/delta T cell CD8+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000100 CD8+ TCRgd Tem CD8+ effector memory gamma/delta T cell CD8+ TCRgd T cell 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000101 Temra CD45RA+ effector memory alpha/beta and gamma/delta T cell T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000101 Temra CD45RA+ effector memory alpha/beta and gamma/delta T cell T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000101 Temra CD45RA+ effector memory alpha/beta and gamma/delta T cell T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000102 CD4+ Temra CD4+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD4+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000102 CD4+ Temra CD4+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD4+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000102 CD4+ Temra CD4+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD4+ T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000103 CD4+ TCRab Temra CD4+ CD45RA+ effector memory alpha/beta T cell CD4 TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000103 CD4+ TCRab Temra CD4+ CD45RA+ effector memory alpha/beta T cell CD4 TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000103 CD4+ TCRab Temra CD4+ CD45RA+ effector memory alpha/beta T cell CD4 TCRab T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000104 CD4+ TCRgd Temra CD4+ CD45RA+ effector memory gamma/delta T cell CD4+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000104 CD4+ TCRgd Temra CD4+ CD45RA+ effector memory gamma/delta T cell CD4+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000104 CD4+ TCRgd Temra CD4+ CD45RA+ effector memory gamma/delta T cell CD4+ TCRgd T cell 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000105 CD8+ Temra CD8+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD8+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000105 CD8+ Temra CD8+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD8+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000105 CD8+ Temra CD8+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD8+ T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000106 CD8+ TCRab Temra CD8+ CD45RA+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000106 CD8+ TCRab Temra CD8+ CD45RA+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000106 CD8+ TCRab Temra CD8+ CD45RA+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000107 T helper TCRab invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000108 T cytotoxic TCRab 1 CL:0001057 myeloid dendritic cell, human 12 0 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000108 T cytotoxic TCRab 2 CL:0002000 Kit-positive erythroid progenitor cell 12 0 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000108 T cytotoxic TCRab 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 10 0 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000109 ConT Treg-like CD4 ConT invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000110 ConT Tfh-like CD4 ConT invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000111 Th1-like CD4 ConT invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000112 Th2-like CD4 ConT invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000113 Th9-like invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000114 Th17-like CD4 ConT invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000115 CD4 PanT helper CD4/CD8 PanT 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183:unknown/CXCR3:unknown (no axiom on any alt.), CD185:unknown/CXCR5:unknown (no axiom on any alt.), CD194:unknown/CCR4:unknown (no axiom on any alt.), CD196:unknown/CCR6:unknown (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000115 CD4 PanT helper CD4/CD8 PanT 2 CL:0001044 effector CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183:unknown/CXCR3:unknown (no axiom on any alt.), CD185:unknown/CXCR5:unknown (no axiom on any alt.), CD194:unknown/CCR4:unknown (no axiom on any alt.), CD196:unknown/CCR6:unknown (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000115 CD4 PanT helper CD4/CD8 PanT 3 CL:0001204 CD4-positive, alpha-beta memory T cell, CD45RO-positive 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183:unknown/CXCR3:unknown (no axiom on any alt.), CD185:unknown/CXCR5:unknown (no axiom on any alt.), CD194:unknown/CCR4:unknown (no axiom on any alt.), CD196:unknown/CCR6:unknown (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000116 Th1-like Surface Only 1 CL:0000545 T-helper 1 cell 16 0 CD4+, CD8-, CD183+, CD196- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD185-, CD194-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, IFNG+, IL-4-, IL-5-, IL-13- no +SOULCAP:SC000116 Th1-like Surface Only 2 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183+, CD185-, CD194-, CD196-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, IFNG+, IL-4-, IL-5-, IL-13- no +SOULCAP:SC000116 Th1-like Surface Only 3 CL:0001044 effector CD4-positive, alpha-beta T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183+, CD185-, CD194-, CD196-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, IFNG+, IL-4-, IL-5-, IL-13- no +SOULCAP:SC000117 Th2-like 1 CL:0000546 T-helper 2 cell 16 0 CD4+, CD8-, CD183-, CD196- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD185-, CD194+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.) no +SOULCAP:SC000117 Th2-like 2 CL:0001046 memory CCR4-positive regulatory T cell 16 0 CD45+, CD4+, CD8-, CD194+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD196-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.) no +SOULCAP:SC000117 Th2-like 3 CL:0001051 CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell 16 0 CD4+, CD8-, CD183-, CD196- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD185-, CD194+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.) no +SOULCAP:SC000118 Th9-like 1 CL:0000546 T-helper 2 cell 16 0 CD4+, CD8-, CD183-, CD196- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD185-, CD194+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+ no +SOULCAP:SC000118 Th9-like 2 CL:0001046 memory CCR4-positive regulatory T cell 16 0 CD45+, CD4+, CD8-, CD194+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD196-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+ no +SOULCAP:SC000118 Th9-like 3 CL:0001051 CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell 16 0 CD4+, CD8-, CD183-, CD196- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD185-, CD194+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+ no +SOULCAP:SC000119 Th17-like 1 CL:0000899 T-helper 17 cell 16 0 CD4+, CD8-, CD183-, CD196+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD185-, CD194:low/CD194- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, IL-17A+ no +SOULCAP:SC000119 Th17-like 2 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD194:low/CD194- (no axiom on any alt.), CD196+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, IL-17A+ no +SOULCAP:SC000119 Th17-like 3 CL:0001044 effector CD4-positive, alpha-beta T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD194:low/CD194- (no axiom on any alt.), CD196+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, IL-17A+ no +SOULCAP:SC000120 Tfh 1 CL:0001057 myeloid dendritic cell, human 12 0 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000120 Tfh 2 CL:0002000 Kit-positive erythroid progenitor cell 12 0 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000120 Tfh 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 10 0 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no +SOULCAP:SC000121 CD4 PanT Treg CD4/CD8 PanT 1 CL:0001046 memory CCR4-positive regulatory T cell 20 0 CD45+, CD4+, CD8-, CD127:low (dim) (1 of 2 alt.), CD25+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000121 CD4 PanT Treg CD4/CD8 PanT 2 CL:0002677 naive regulatory T cell 20 0 CD45+, CD4+, CD8-, CD127:low (dim) (1 of 2 alt.), CD25+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000121 CD4 PanT Treg CD4/CD8 PanT 3 CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell 17 1 CD4+, CD8-, CD127:low (dim) (1 of 2 alt.), CD25+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no +SOULCAP:SC000122 Vg9 Vd2 TCRgd 1 CL:0002467 Gr1-high myeloid suppressor cell 6 0 CD45+, CD11C:not:high (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), TCRVD2+, TCRVG9+, CD15-/CD66B- (no axiom on any alt.), CD16-, TCR:unknown, V:unknown, DELTA1- no +SOULCAP:SC000122 Vg9 Vd2 TCRgd 2 CL:0000097 mast cell 4 0 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), TCRVD2+, TCRVG9+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, TCR:unknown, V:unknown, DELTA1- no +SOULCAP:SC000122 Vg9 Vd2 TCRgd 3 CL:0000484 connective tissue type mast cell 4 0 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), TCRVD2+, TCRVG9+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, TCR:unknown, V:unknown, DELTA1- no +SOULCAP:SC000123 Vd2 TCRgd invalid expression in Required phenotypic markers: invalid marker token '2+' +SOULCAP:SC000124 Vd3 TCRgd invalid expression in Required phenotypic markers: invalid marker token '1-' +SOULCAP:SC000125 Vg9 Vd1 invalid expression in Required phenotypic markers: invalid marker token '1+' +SOULCAP:SC000126 Vd1 TCRgd invalid expression in Required phenotypic markers: invalid marker token '1+' +SOULCAP:SC000127 Vg9 TCRgd invalid expression in Required phenotypic markers: invalid marker token '1-' diff --git a/reports/candidate_cl_mappings_enhanced.tsv b/reports/candidate_cl_mappings_enhanced.tsv new file mode 100644 index 0000000..2fb147e --- /dev/null +++ b/reports/candidate_cl_mappings_enhanced.tsv @@ -0,0 +1,334 @@ +subject_id specimen abbreviation full_name parent type_of_match existing_cl_id rank cl_id cl_label score hint_bonus matched contradictions gaps disqualified note candidate_sources lexical_evidence resolution_evidence +SOULCAP:SC000001 NK Natural Killer Cell Exact 1 CL:0002338 CD56-positive, CD161-positive immature natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+ (1 of 2 alt.) CD45+, CD127-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123-, CD33-/CD64- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001381"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD122"", ""tokens"": [""CD122""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000001 NK Natural Killer Cell Exact 2 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 19 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (hi) (1 of 2 alt.) CD34-, CD45+, CD127-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123-, CD33-/CD64- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000001 NK Natural Killer Cell Exact 3 CL:0000939 CD16-positive, CD56-dim natural killer cell, human 19 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (dim) (1 of 2 alt.) CD34-, CD45+, CD127-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123-, CD33-/CD64- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}]" +SOULCAP:SC000002 NK2 Natural Killer Cell 2 NK Surface Only (SO) 1 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56:high (hi), CD16- (1 of 2 alt.) CD34-, CD45+, CD127-, CD57-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000002 NK2 Natural Killer Cell 2 NK Surface Only (SO) 2 CL:0002343 decidual natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56:high (hi), CD16- (1 of 2 alt.) CD34-, CD45+, CD127-, CD57-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000009766"", ""asserted"": ""True"", ""paths"": []}]" +SOULCAP:SC000002 NK2 Natural Killer Cell 2 NK Surface Only (SO) 3 CL:0002338 CD56-positive, CD161-positive immature natural killer cell, human 19 3 CD14- (1 of 3 alt.), CD34-, CD3-, CD19- CD45+, CD56:high, CD127-, CD16-/CD16:low (no axiom on any alt.), CD57-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001381"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD122"", ""tokens"": [""CD122""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000003 CTNK Cytotoxice Natural Killer Cell NK SO and Cytokine 1 CL:0000939 CD16-positive, CD56-dim natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (dim) (1 of 2 alt.), CD16+ CD34-, CD45+, CD127-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}]" +SOULCAP:SC000003 CTNK Cytotoxice Natural Killer Cell NK SO and Cytokine 2 CL:0002338 CD56-positive, CD161-positive immature natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+ (1 of 2 alt.) CD45+, CD127-, CD16+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001381"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD122"", ""tokens"": [""CD122""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000003 CTNK Cytotoxice Natural Killer Cell NK SO and Cytokine 3 CL:0001073 CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human 17 1 CD34-, CD3-, CD19-, CD56+ (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD45+, CD127-, CD16+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:P28906"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""positive"", ""pr"": ""PR:P10721"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}]}, {""sense"": ""positive"", ""pr"": ""PR:P13591"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}]}]" +SOULCAP:SC000004 NK1 Natural Killer Cell 1 CTNK SO and TF 1 CL:0000939 CD16-positive, CD56-dim natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (dim), CD16+ CD34-, CD45+, CD127-, CD57-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}]" +SOULCAP:SC000004 NK1 Natural Killer Cell 1 CTNK SO and TF 2 CL:0002338 CD56-positive, CD161-positive immature natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+ CD45+, CD127-, CD16+, CD57-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001381"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD122"", ""tokens"": [""CD122""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000004 NK1 Natural Killer Cell 1 CTNK SO and TF 3 CL:0001073 CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human 17 1 CD34-, CD3-, CD19-, CD56+ CD14-/CD33-/CD64- (no axiom on any alt.), CD45+, CD127-, CD16+, CD57-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:P28906"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""positive"", ""pr"": ""PR:P10721"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}]}, {""sense"": ""positive"", ""pr"": ""PR:P13591"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}]}]" +SOULCAP:SC000005 NK3 Natural Killer Cell 3 CTNK TF ONLY 1 CL:0000939 CD16-positive, CD56-dim natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (dim), CD16+ CD34-, CD45+, CD127-, CD57+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}]" +SOULCAP:SC000005 NK3 Natural Killer Cell 3 CTNK TF ONLY 2 CL:0002338 CD56-positive, CD161-positive immature natural killer cell, human 23 3 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+ CD45+, CD127-, CD16+, CD57+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001381"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD122"", ""tokens"": [""CD122""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000005 NK3 Natural Killer Cell 3 CTNK TF ONLY 3 CL:0001073 CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human 17 1 CD34-, CD3-, CD19-, CD56+ CD14-/CD33-/CD64- (no axiom on any alt.), CD45+, CD127-, CD16+, CD57+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:P28906"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""positive"", ""pr"": ""PR:P10721"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}]}, {""sense"": ""positive"", ""pr"": ""PR:P13591"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}]}]" +SOULCAP:SC000006 ILCp Innate Lymphoid Cell Progenitor Surface Only (SO) 1 CL:0001073 CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human 15 3 CD3-, CD56+, CD117+ CD45+, CD127+, CD294- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:P28906"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""positive"", ""pr"": ""PR:P10721"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}]}, {""sense"": ""positive"", ""pr"": ""PR:P13591"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}]}]" +SOULCAP:SC000006 ILCp Innate Lymphoid Cell Progenitor Surface Only (SO) 2 CL:0001076 NKp46-positive innate lymphoid cell, human 15 3 CD3-, CD56+, CD117+ CD45+, CD127+, CD294- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001893"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD335"", ""tokens"": [""CD335""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""positive"", ""pr"": ""PR:O76036"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD335"", ""tokens"": [""CD335""]}]}, {""sense"": ""positive"", ""pr"": ""PR:P10721"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}]}, {""sense"": ""positive"", ""pr"": ""PR:P13591"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:P28906"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}]}]" +SOULCAP:SC000006 ILCp Innate Lymphoid Cell Progenitor Surface Only (SO) 3 CL:0001074 CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human 14 2 CD3-, CD56+, CD117+ CD45+, CD127+, CD294- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""positive"", ""pr"": ""PR:P10721"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}]}, {""sense"": ""positive"", ""pr"": ""PR:P13591"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:P28906"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}]}]" +SOULCAP:SC000007 ILC Innate Lymphoid Cell Surface Only (SO) 1 CL:0000989 CD11c-low plasmacytoid dendritic cell 23 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001013"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002978"", ""asserted"": ""True"", ""paths"": []}]" +SOULCAP:SC000007 ILC Innate Lymphoid Cell Surface Only (SO) 2 CL:0000992 immature CD11c-low plasmacytoid dendritic cell 23 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001412"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD86"", ""tokens"": [""CD86""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001438"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD80"", ""tokens"": [""CD80""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000007 ILC Innate Lymphoid Cell Surface Only (SO) 3 CL:0000993 mature CD11c-low plasmacytoid dendritic cell 23 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001412"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD86"", ""tokens"": [""CD86""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001438"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD80"", ""tokens"": [""CD80""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001310"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD83"", ""tokens"": [""CD83""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000008 ILC1 Innate Lymphoid Cell 1 ILC Surface Only (SO) 1 CL:0000989 CD11c-low plasmacytoid dendritic cell 27 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117-, CD294-, CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001013"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002978"", ""asserted"": ""True"", ""paths"": []}]" +SOULCAP:SC000008 ILC1 Innate Lymphoid Cell 1 ILC Surface Only (SO) 2 CL:0000992 immature CD11c-low plasmacytoid dendritic cell 27 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117-, CD294-, CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001412"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD86"", ""tokens"": [""CD86""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001438"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD80"", ""tokens"": [""CD80""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000008 ILC1 Innate Lymphoid Cell 1 ILC Surface Only (SO) 3 CL:0000993 mature CD11c-low plasmacytoid dendritic cell 27 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117-, CD294-, CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001412"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD86"", ""tokens"": [""CD86""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001438"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD80"", ""tokens"": [""CD80""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001310"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD83"", ""tokens"": [""CD83""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000009 ILC2 Innate Lymphoid Cell 2 ILC Surface Only (SO) 1 CL:0002029 Fc-epsilon RIalpha-low mast cell progenitor 29 1 CD14- (1 of 3 alt.), CD3-, CD19-, CD45+, CD3-, CD56-, CD117:low (dim) (1 of 2 alt.) CD34-, CD127+, CD294+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000009143"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""low"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""low"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002980"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002981"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000005307"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""True"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000005178"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD9"", ""tokens"": [""CD9""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000007857"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000007858"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000016401"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000009 ILC2 Innate Lymphoid Cell 2 ILC Surface Only (SO) 2 CL:0000989 CD11c-low plasmacytoid dendritic cell 27 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117:low/CD117- (no axiom on any alt.), CD294+, CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001013"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002978"", ""asserted"": ""True"", ""paths"": []}]" +SOULCAP:SC000009 ILC2 Innate Lymphoid Cell 2 ILC Surface Only (SO) 3 CL:0000992 immature CD11c-low plasmacytoid dendritic cell 27 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117:low/CD117- (no axiom on any alt.), CD294+, CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001412"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD86"", ""tokens"": [""CD86""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001438"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD80"", ""tokens"": [""CD80""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000010 ILC3 Innate Lymphoid Cell 3 ILC Surface Only (SO) 1 CL:0002029 Fc-epsilon RIalpha-low mast cell progenitor 29 1 CD14- (1 of 3 alt.), CD3-, CD19-, CD45+, CD3-, CD56- (1 of 2 alt.), CD117+ (dim) CD34-, CD127+, CD294-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000009143"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""low"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""low"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002980"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002981"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000005307"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""True"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000005178"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD9"", ""tokens"": [""CD9""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000007857"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000007858"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000016401"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000010 ILC3 Innate Lymphoid Cell 3 ILC Surface Only (SO) 2 CL:0002344 CD56-negative, CD161-positive immature natural killer cell, human 29 1 CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD3-, CD56- (1 of 2 alt.), CD117+ CD45+, CD127+, CD294-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001381"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD122"", ""tokens"": [""CD122""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000010 ILC3 Innate Lymphoid Cell 3 ILC Surface Only (SO) 3 CL:0000989 CD11c-low plasmacytoid dendritic cell 27 1 CD34-, CD3-, CD19-, CD45+, CD3-, CD56- (1 of 2 alt.), CD11C:not:high (dim) (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117+, CD294-, CD15-/CD66B- (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001013"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002978"", ""asserted"": ""True"", ""paths"": []}]" +SOULCAP:SC000011 cDC Conventional Dendritic Cell Exact 1 CL:0001057 myeloid dendritic cell, human 24 2 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD14-, CD11C:high (hi), CD3-, CD19-, CD56- CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), HLA-DR+, CD127- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000011 cDC Conventional Dendritic Cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 21 1 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD14-, CD3-, CD19-, CD56-, CD127- CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), CD11C:high, HLA-DR+ no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000011 cDC Conventional Dendritic Cell Exact 3 CL:0000782 myeloid dendritic cell 20 2 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD11C:high (hi), CD3-, CD19-, CD56- CD14-, CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), HLA-DR+, CD127- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}]" +SOULCAP:SC000012 cDC1 Conventional Dendritic Cell 1 DCM Exact 1 CL:0001057 myeloid dendritic cell, human 24 2 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD14-, CD11C:high (hi), CD3-, CD19-, CD56- CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), HLA-DR+, CD1C-, CD141+, CD127-, CD172A-, FCER1A- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000012 cDC1 Conventional Dendritic Cell 1 DCM Exact 2 CL:0002394 CD141-positive myeloid dendritic cell 24 2 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD11C:high (hi), CD141+, CD3-, CD19-, CD56- CD14-, CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), HLA-DR+, CD1C-, CD127-, CD172A-, FCER1A- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002105"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD141"", ""tokens"": [""CD141""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002105"", ""tokens"": [""CD141""]}]}]" +SOULCAP:SC000012 cDC1 Conventional Dendritic Cell 1 DCM Exact 3 CL:0002000 Kit-positive erythroid progenitor cell 21 1 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD14-, CD3-, CD19-, CD56-, CD127- CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), CD11C:high, HLA-DR+, CD1C-, CD141+, CD172A-, FCER1A- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000013 cDC2 Conventional Dendritic Cell 2 DCM Exact 1 CL:0001057 myeloid dendritic cell, human 24 2 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD14-, CD11C:high (hi), CD3-, CD19-, CD56- CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), HLA-DR+, CD1C+, CD141:low/CD141- (no axiom on any alt.), CD127-, CD172A+, FCER1A:low/FCER1A- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000013 cDC2 Conventional Dendritic Cell 2 DCM Exact 2 CL:0002399 CD1c-positive myeloid dendritic cell 24 2 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD11C:high (hi), CD1C+, CD3-, CD19-, CD56- CD14-, CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), HLA-DR+, CD141:low/CD141- (no axiom on any alt.), CD127-, CD172A+, FCER1A:low/FCER1A- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002027"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD1C"", ""tokens"": [""CD1C""]}, {""via"": ""exact_alias"", ""source_token"": ""CD1C"", ""tokens"": [""CD1C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002027"", ""tokens"": [""CD1C""]}]}]" +SOULCAP:SC000013 cDC2 Conventional Dendritic Cell 2 DCM Exact 3 CL:0002000 Kit-positive erythroid progenitor cell 21 1 CD123:not:high (1 of 2 alt.), CD123:not:high (1 of 2 alt.), CD14-, CD3-, CD19-, CD56-, CD127- CD16-, CD45+, CD33:high/CD64+ (no axiom on any alt.), CD11C:high, HLA-DR+, CD1C+, CD141:low/CD141- (no axiom on any alt.), CD172A+, FCER1A:low/FCER1A- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000014 PBMC pDC Peripheral Dendritic Cell Exact 1 CL:0000991 CD11c-negative plasmacytoid dendritic cell 18 2 CD3-, CD45+, CD303+ (1 of 3 alt.), CD56-, CD19- CD33:low/CD33+/CD123:high (no axiom on any alt.), CD127-, CD15-/CD66B- (no axiom on any alt.), CD14-, CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001013"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001292"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD303"", ""tokens"": [""CD303""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001292"", ""tokens"": [""CD303""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001398"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD85"", ""tokens"": [""CD85""]}, {""via"": ""exact_alias"", ""source_token"": ""CD85G"", ""tokens"": [""CD85G""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}]" +SOULCAP:SC000014 PBMC pDC Peripheral Dendritic Cell Exact 2 CL:0000994 immature CD11c-negative plasmacytoid dendritic cell 18 2 CD3-, CD45+, CD303+ (1 of 3 alt.), CD56-, CD19- CD33:low/CD33+/CD123:high (no axiom on any alt.), CD127-, CD15-/CD66B- (no axiom on any alt.), CD14-, CD16- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001412"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD86"", ""tokens"": [""CD86""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001438"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD80"", ""tokens"": [""CD80""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001292"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD303"", ""tokens"": [""CD303""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001292"", ""tokens"": [""CD303""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001398"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD85"", ""tokens"": [""CD85""]}, {""via"": ""exact_alias"", ""source_token"": ""CD85G"", ""tokens"": [""CD85G""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}]" +SOULCAP:SC000014 PBMC pDC Peripheral Dendritic Cell Exact 3 CL:0000996 mature CD11c-negative plasmacytoid dendritic cell 18 2 CD3-, CD45+, CD303+ (1 of 3 alt.), CD56-, CD19- CD33:low/CD33+/CD123:high (no axiom on any alt.), CD127-, CD15-/CD66B- (no axiom on any alt.), CD14-, CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001412"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD86"", ""tokens"": [""CD86""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001438"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD80"", ""tokens"": [""CD80""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001292"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD303"", ""tokens"": [""CD303""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001292"", ""tokens"": [""CD303""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001310"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD83"", ""tokens"": [""CD83""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001398"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD85"", ""tokens"": [""CD85""]}, {""via"": ""exact_alias"", ""source_token"": ""CD85G"", ""tokens"": [""CD85G""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}]" +SOULCAP:SC000015 PBMC Basophil Basophil Exact 1 CL:0000614 basophilic myelocyte 20 1 CD3-, CD33+ (1 of 2 alt.), CD193+ (hi) (1 of 4 alt.), CD56-, CD19-, CD16-, FCER1A+ (hi) CD15-/CD66B- (all alt. conflict) CD45+, CD127-, CD14-, HLA-DR- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001332"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD66B"", ""tokens"": [""CD66B""]}, {""via"": ""exact_alias"", ""source_token"": ""CD67"", ""tokens"": [""CD67""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001332"", ""tokens"": [""CD66B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001344"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD203C"", ""tokens"": [""CD203C""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001456"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD15"", ""tokens"": [""CD15""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001456"", ""tokens"": [""CD15""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001892"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD33"", ""tokens"": [""CD33""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001892"", ""tokens"": [""CD33""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001932"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001950"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD154"", ""tokens"": [""CD154""]}, {""via"": ""exact_alias"", ""source_token"": ""CD40"", ""tokens"": [""CD40""]}, {""via"": ""exact_alias"", ""source_token"": ""CD40LG"", ""tokens"": [""CD40LG""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001969"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD87"", ""tokens"": [""CD87""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002031"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD13"", ""tokens"": [""CD13""]}]}]" +SOULCAP:SC000015 PBMC Basophil Basophil Exact 2 CL:0002029 Fc-epsilon RIalpha-low mast cell progenitor 20 0 CD3-, CD45+, FCER1A+ (dim) (1 of 4 alt.), CD56-, CD19-, CD14-, FCER1A+ (dim) CD33+/CD123+ (no axiom on any alt.), CD127-, CD15-/CD66B- (no axiom on any alt.), CD16-, HLA-DR- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000009143"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""low"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""low"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002980"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002981"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000005307"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""True"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000005178"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD9"", ""tokens"": [""CD9""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000007857"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000007858"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000016401"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000015 PBMC Basophil Basophil Exact 3 CL:0000043 mature basophil 19 1 CD3-, CD123+ (hi) (1 of 2 alt.), CD193+ (hi) (1 of 4 alt.), CD56-, CD19-, FCER1A+ (hi) CD45+, CD127-, CD15-/CD66B- (no axiom on any alt.), CD14-, CD16-, HLA-DR- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""basophil"", ""exact"": false, ""token_jaccard"": 0.5}" "[{""sense"": ""high"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001332"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD66B"", ""tokens"": [""CD66B""]}, {""via"": ""exact_alias"", ""source_token"": ""CD67"", ""tokens"": [""CD67""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001332"", ""tokens"": [""CD66B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001344"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD203C"", ""tokens"": [""CD203C""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001950"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD154"", ""tokens"": [""CD154""]}, {""via"": ""exact_alias"", ""source_token"": ""CD40"", ""tokens"": [""CD40""]}, {""via"": ""exact_alias"", ""source_token"": ""CD40LG"", ""tokens"": [""CD40LG""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001969"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD87"", ""tokens"": [""CD87""]}]}]" +SOULCAP:SC000016 WB Basophil Basophil Exact 1 CL:0000043 mature basophil 17 1 CD3-, CD193+ (hi), CD123+ (hi), CD56-, CD19- CD15-/CD66B- (no axiom on any alt.), CD45+, CD127- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""basophil"", ""exact"": false, ""token_jaccard"": 0.5}" "[{""sense"": ""high"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001332"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD66B"", ""tokens"": [""CD66B""]}, {""via"": ""exact_alias"", ""source_token"": ""CD67"", ""tokens"": [""CD67""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001332"", ""tokens"": [""CD66B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001344"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD203C"", ""tokens"": [""CD203C""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001950"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD154"", ""tokens"": [""CD154""]}, {""via"": ""exact_alias"", ""source_token"": ""CD40"", ""tokens"": [""CD40""]}, {""via"": ""exact_alias"", ""source_token"": ""CD40LG"", ""tokens"": [""CD40LG""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001969"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD87"", ""tokens"": [""CD87""]}]}]" +SOULCAP:SC000016 WB Basophil Basophil Exact 2 CL:0000767 basophil 17 1 CD3-, CD193+ (hi), CD123+ (hi), CD56-, CD19- CD15-/CD66B- (no axiom on any alt.), CD45+, CD127- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""basophil"", ""exact"": true, ""token_jaccard"": 1.0}" "[{""sense"": ""high"", ""pr"": ""PR:000001255"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""True"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001332"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD66B"", ""tokens"": [""CD66B""]}, {""via"": ""exact_alias"", ""source_token"": ""CD67"", ""tokens"": [""CD67""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001332"", ""tokens"": [""CD66B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001344"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD203C"", ""tokens"": [""CD203C""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001950"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD154"", ""tokens"": [""CD154""]}, {""via"": ""exact_alias"", ""source_token"": ""CD40"", ""tokens"": [""CD40""]}, {""via"": ""exact_alias"", ""source_token"": ""CD40LG"", ""tokens"": [""CD40LG""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001969"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD87"", ""tokens"": [""CD87""]}]}]" +SOULCAP:SC000016 WB Basophil Basophil Exact 3 CL:0000768 immature basophil 17 1 CD3-, CD193+ (hi), CD123+ (hi), CD56-, CD19- CD15-/CD66B- (no axiom on any alt.), CD45+, CD127- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""basophil"", ""exact"": false, ""token_jaccard"": 0.5}" "[{""sense"": ""high"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001332"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD66B"", ""tokens"": [""CD66B""]}, {""via"": ""exact_alias"", ""source_token"": ""CD67"", ""tokens"": [""CD67""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001332"", ""tokens"": [""CD66B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001344"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD203C"", ""tokens"": [""CD203C""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001950"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD154"", ""tokens"": [""CD154""]}, {""via"": ""exact_alias"", ""source_token"": ""CD40"", ""tokens"": [""CD40""]}, {""via"": ""exact_alias"", ""source_token"": ""CD40LG"", ""tokens"": [""CD40LG""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001969"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD87"", ""tokens"": [""CD87""]}]}]" +SOULCAP:SC000017 WB and PBMC Mono Monocyte Exact CL:0000576 invalid expression in Required exclusion: unexpected ')' in group +SOULCAP:SC000018 WB and PBMC CMo Classical Monocyte Mono Exact CL:0000860 invalid expression in Required exclusion: unexpected ')' in group +SOULCAP:SC000019 WB and PBMC NCMo Non-classical Monocyte Mono Exact CL:0000875 invalid expression in Required exclusion: unexpected ')' in group +SOULCAP:SC000020 WB and PBMC IntMo Intermediate Monocyte Mono Exact CL:0002393 invalid expression in Required exclusion: unexpected ')' in group +SOULCAP:SC000021 WB and PBMC Neut Neutrophil Exact 1 CL:0000582 neutrophilic metamyelocyte 18 2 CD3-, CD56-, CD66B+ (1 of 2 alt.), CD19-, CD33+ (1 of 2 alt.) CD14:low/CD14- (no axiom on any alt.), CD123-, CD45+, CD193-, CD16:high, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.) no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""neutrophil"", ""exact"": false, ""token_jaccard"": 0.5}" "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001580"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001332"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD66B"", ""tokens"": [""CD66B""]}, {""via"": ""exact_alias"", ""source_token"": ""CD67"", ""tokens"": [""CD67""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001332"", ""tokens"": [""CD66B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001456"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD15"", ""tokens"": [""CD15""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001456"", ""tokens"": [""CD15""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001479"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001879"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001892"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD33"", ""tokens"": [""CD33""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001892"", ""tokens"": [""CD33""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001932"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001944"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001969"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD87"", ""tokens"": [""CD87""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002031"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD13"", ""tokens"": [""CD13""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000005307"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000005310"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000009725"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000009978"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000010543"", ""asserted"": ""True"", ""paths"": []}]" +SOULCAP:SC000021 WB and PBMC Neut Neutrophil Exact 2 CL:0001021 CD34-positive, CD38-positive common lymphoid progenitor 18 0 CD3-, CD56-, CD14- (1 of 2 alt.), CD45+, CD19- CD123-, CD15:high/CD66B+ (no axiom on any alt.), CD193-, CD16:high, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD64-/CD33+ (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002981"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001898"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD10"", ""tokens"": [""CD10""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001898"", ""tokens"": [""CD10""]}]}]" +SOULCAP:SC000021 WB and PBMC Neut Neutrophil Exact 3 CL:0001057 myeloid dendritic cell, human 18 0 CD3-, CD56-, CD14- (1 of 2 alt.), CD123-, CD19- CD45+, CD15:high/CD66B+ (no axiom on any alt.), CD193-, CD16:high, HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD64-/CD33+ (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000022 WB Eos Eosinophil Exact 1 CL:0000612 eosinophilic myelocyte 26 2 CD3-, CD56-, CD66B+ (1 of 2 alt.), CD193+, CD16-, CD19-, CD33+ (1 of 2 alt.) CD14:low/CD14- (no axiom on any alt.), CD123-, CD45+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001254"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD191"", ""tokens"": [""CD191""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001332"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD66B"", ""tokens"": [""CD66B""]}, {""via"": ""exact_alias"", ""source_token"": ""CD67"", ""tokens"": [""CD67""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001332"", ""tokens"": [""CD66B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001343"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD69"", ""tokens"": [""CD69""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001456"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD15"", ""tokens"": [""CD15""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001456"", ""tokens"": [""CD15""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001892"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD33"", ""tokens"": [""CD33""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001892"", ""tokens"": [""CD33""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001932"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001969"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD87"", ""tokens"": [""CD87""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002031"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD13"", ""tokens"": [""CD13""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000005178"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD9"", ""tokens"": [""CD9""]}]}]" +SOULCAP:SC000022 WB Eos Eosinophil Exact 2 CL:0000041 mature eosinophil 20 2 CD3-, CD56-, CD66B+ (1 of 2 alt.), CD193+, CD19- CD14:low/CD14- (no axiom on any alt.), CD123-, CD45+, CD16-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD64-/CD33+ (no axiom on any alt.) no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""eosinophil"", ""exact"": false, ""token_jaccard"": 0.5}" "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001254"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD191"", ""tokens"": [""CD191""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001332"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD66B"", ""tokens"": [""CD66B""]}, {""via"": ""exact_alias"", ""source_token"": ""CD67"", ""tokens"": [""CD67""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001332"", ""tokens"": [""CD66B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001343"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD69"", ""tokens"": [""CD69""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001969"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD87"", ""tokens"": [""CD87""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000005178"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD9"", ""tokens"": [""CD9""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000007152"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000007857"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000007858"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000009129"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD49"", ""tokens"": [""CD49""]}, {""via"": ""exact_alias"", ""source_token"": ""CD49D"", ""tokens"": [""CD49D""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000014046"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000014047"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000022006"", ""asserted"": ""True"", ""paths"": []}]" +SOULCAP:SC000022 WB Eos Eosinophil Exact 3 CL:0000580 neutrophilic myelocyte 20 0 CD3-, CD56-, CD66B+ (1 of 2 alt.), CD16-, CD19-, CD33+ (1 of 2 alt.) CD14:low/CD14- (no axiom on any alt.), CD123-, CD45+, CD193+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001332"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD66B"", ""tokens"": [""CD66B""]}, {""via"": ""exact_alias"", ""source_token"": ""CD67"", ""tokens"": [""CD67""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001332"", ""tokens"": [""CD66B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001456"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD15"", ""tokens"": [""CD15""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001456"", ""tokens"": [""CD15""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001479"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001879"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001892"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD33"", ""tokens"": [""CD33""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001892"", ""tokens"": [""CD33""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001932"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001944"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001969"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD87"", ""tokens"": [""CD87""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002031"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD13"", ""tokens"": [""CD13""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000005307"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000005310"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000009725"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000009978"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000010543"", ""asserted"": ""True"", ""paths"": []}]" +SOULCAP:SC000023 B cell B cell Exact 1 CL:0000819 B-1 B cell 15 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""b cell"", ""exact"": false, ""token_jaccard"": 0.5}" "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001879"", ""asserted"": ""True"", ""paths"": []}]" +SOULCAP:SC000023 B cell B cell Exact 2 CL:0000820 B-1a B cell 15 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""b cell"", ""exact"": false, ""token_jaccard"": 0.5}" "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001839"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001879"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000023 B cell B cell Exact 3 CL:0000821 B-1b B cell 15 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""b cell"", ""exact"": false, ""token_jaccard"": 0.5}" "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001879"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000024 ASC Antibody Secreting Cell Surface Only (SO) 1 CL:0000949 IgD plasmablast 18 0 CD3-, CD19+, CD27+ (hi) (1 of 2 alt.), CD38:high (hi), CD20- (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}]" +SOULCAP:SC000024 ASC Antibody Secreting Cell Surface Only (SO) 2 CL:0000950 IgE plasmablast 18 0 CD3-, CD19+, CD27+ (hi) (1 of 2 alt.), CD38:high (hi), CD20- (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}]" +SOULCAP:SC000024 ASC Antibody Secreting Cell Surface Only (SO) 3 CL:0000980 plasmablast 18 0 CD3-, CD19+, CD27+ (hi) (1 of 2 alt.), CD38:high (hi), CD20- (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001963"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}]" +SOULCAP:SC000025 PB Plasmablast ASC Surface Only (SO) 1 CL:0000949 IgD plasmablast 23 1 CD3-, CD19+, CD27+ (hi) (1 of 2 alt.), CD38:high (hi), CD138-, CD20- (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""plasmablast"", ""exact"": false, ""token_jaccard"": 0.5}" "[{""sense"": ""high"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}]" +SOULCAP:SC000025 PB Plasmablast ASC Surface Only (SO) 2 CL:0000950 IgE plasmablast 23 1 CD3-, CD19+, CD27+ (hi) (1 of 2 alt.), CD38:high (hi), CD138-, CD20- (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""plasmablast"", ""exact"": false, ""token_jaccard"": 0.5}" "[{""sense"": ""high"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}]" +SOULCAP:SC000025 PB Plasmablast ASC Surface Only (SO) 3 CL:0000980 plasmablast 23 1 CD3-, CD19+, CD27+ (hi) (1 of 2 alt.), CD38:high (hi), CD138-, CD20- (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""plasmablast"", ""exact"": true, ""token_jaccard"": 1.0}" "[{""sense"": ""high"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001963"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}]" +SOULCAP:SC000026 PC Plasma Cell ASC Surface Only (SO) 1 CL:0002047 fraction B precursor B cell 13 1 CD3-, CD45+, CD19+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27+/CD27:high (no axiom on any alt.), CD38:high, CD138+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123-, CD20- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002039"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD249"", ""tokens"": [""CD249""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001879"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001898"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD10"", ""tokens"": [""CD10""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001898"", ""tokens"": [""CD10""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001932"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002037"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD93"", ""tokens"": [""CD93""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW93"", ""tokens"": [""CDW93""]}]}]" +SOULCAP:SC000026 PC Plasma Cell ASC Surface Only (SO) 2 CL:0002049 fraction C precursor B cell 13 1 CD3-, CD45+, CD19+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27+/CD27:high (no axiom on any alt.), CD38:high, CD138+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123-, CD20- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001858"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD179"", ""tokens"": [""CD179""]}, {""via"": ""exact_alias"", ""source_token"": ""CD179A"", ""tokens"": [""CD179A""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001859"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD179"", ""tokens"": [""CD179""]}, {""via"": ""exact_alias"", ""source_token"": ""CD179B"", ""tokens"": [""CD179B""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001879"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001898"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD10"", ""tokens"": [""CD10""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001898"", ""tokens"": [""CD10""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001932"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002037"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD93"", ""tokens"": [""CD93""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW93"", ""tokens"": [""CDW93""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002039"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD249"", ""tokens"": [""CD249""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000003457"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000003460"", ""asserted"": ""True"", ""paths"": []}]" +SOULCAP:SC000026 PC Plasma Cell ASC Surface Only (SO) 3 CL:0002050 fraction C' precursor B cell 13 1 CD3-, CD45+, CD19+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27+/CD27:high (no axiom on any alt.), CD38:high, CD138+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123-, CD20- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001932"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001879"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001898"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD10"", ""tokens"": [""CD10""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001898"", ""tokens"": [""CD10""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002039"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD249"", ""tokens"": [""CD249""]}]}]" +SOULCAP:SC000027 Transitional Transitional B cell Exact no qualified markers found +SOULCAP:SC000028 T1/T2 B Transitonal B cell 1 and 2 1 CL:0000818 transitional stage B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD38:high (hi) (1 of 2 alt.), CD24:high (hi), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001932"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}]" +SOULCAP:SC000028 T1/T2 B Transitonal B cell 1 and 2 2 CL:0000958 T1 B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD38:high (hi) (1 of 2 alt.), CD24:high (hi), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001932"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001318"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001338"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD21"", ""tokens"": [""CD21""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001338"", ""tokens"": [""CD21""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001880"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD23"", ""tokens"": [""CD23""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002037"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD93"", ""tokens"": [""CD93""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW93"", ""tokens"": [""CDW93""]}]}]" +SOULCAP:SC000028 T1/T2 B Transitonal B cell 1 and 2 3 CL:0000959 T2 B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD38:high (hi) (1 of 2 alt.), CD24:high (hi), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001932"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001318"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001338"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD21"", ""tokens"": [""CD21""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001338"", ""tokens"": [""CD21""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001880"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD23"", ""tokens"": [""CD23""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002037"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD93"", ""tokens"": [""CD93""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW93"", ""tokens"": [""CDW93""]}]}]" +SOULCAP:SC000029 Mature B Mature B cell Exact 1 CL:0000961 Bm1 B cell 19 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001879"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001880"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD23"", ""tokens"": [""CD23""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002037"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD93"", ""tokens"": [""CD93""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW93"", ""tokens"": [""CDW93""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001338"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD21"", ""tokens"": [""CD21""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001338"", ""tokens"": [""CD21""]}]}]" +SOULCAP:SC000029 Mature B Mature B cell Exact 2 CL:0002102 CD38-negative naive B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}]" +SOULCAP:SC000029 Mature B Mature B cell Exact 3 CL:0002109 B220-positive CD38-positive naive B cell 19 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38:low/CD38- (no axiom on any alt.), CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}]" +SOULCAP:SC000030 T3 Transitional B cell 3 Mature B Exact 1 CL:0000961 Bm1 B cell 19 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD24+, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001879"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001880"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD23"", ""tokens"": [""CD23""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002037"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD93"", ""tokens"": [""CD93""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW93"", ""tokens"": [""CDW93""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001338"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD21"", ""tokens"": [""CD21""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001338"", ""tokens"": [""CD21""]}]}]" +SOULCAP:SC000030 T3 Transitional B cell 3 Mature B Exact 2 CL:0002102 CD38-negative naive B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24+, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}]" +SOULCAP:SC000030 T3 Transitional B cell 3 Mature B Exact 3 CL:0002109 B220-positive CD38-positive naive B cell 19 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38:low/CD38-/CD10:low (no axiom on any alt.), CD24+, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}]" +SOULCAP:SC000031 Naive Naive B cell Mature B Exact 1 CL:0002102 CD38-negative naive B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24-, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""naive b cell"", ""exact"": false, ""token_jaccard"": 0.6666666666666666}" "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}]" +SOULCAP:SC000031 Naive Naive B cell Mature B Exact 2 CL:0002109 B220-positive CD38-positive naive B cell 20 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38:low/CD38-/CD10- (no axiom on any alt.), CD24-, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""naive b cell"", ""exact"": false, ""token_jaccard"": 0.5}" "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}]" +SOULCAP:SC000031 Naive Naive B cell Mature B Exact 3 CL:0002110 B220-low CD38-positive naive B cell 20 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38:low/CD38-/CD10- (no axiom on any alt.), CD24-, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}]" +SOULCAP:SC000032 BDN Double Negative B cells Mature B Exact 1 CL:0002102 CD38-negative naive B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24-, IGD-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}]" +SOULCAP:SC000032 BDN Double Negative B cells Mature B Exact 2 CL:0000961 Bm1 B cell 18 0 CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD24-, IGD-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001879"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001880"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD23"", ""tokens"": [""CD23""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002037"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD93"", ""tokens"": [""CD93""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW93"", ""tokens"": [""CDW93""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001338"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD21"", ""tokens"": [""CD21""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001338"", ""tokens"": [""CD21""]}]}]" +SOULCAP:SC000032 BDN Double Negative B cells Mature B Exact 3 CL:0002109 B220-positive CD38-positive naive B cell 18 0 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38:low/CD38-/CD10- (no axiom on any alt.), CD24-, IGD-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}]" +SOULCAP:SC000033 BDN1 Double Negative B cell 1 BDN Exact 1 CL:0000961 Bm1 B cell 23 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 3 alt.), CD21+, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD24+, IGD-, CD11C-, CD185+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001879"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001880"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD23"", ""tokens"": [""CD23""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002037"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD93"", ""tokens"": [""CD93""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW93"", ""tokens"": [""CDW93""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001338"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD21"", ""tokens"": [""CD21""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001338"", ""tokens"": [""CD21""]}]}]" +SOULCAP:SC000033 BDN1 Double Negative B cell 1 BDN Exact 2 CL:0002055 CD38-negative immature B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD38- (1 of 3 alt.), CD21+ (dim), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD24+, IGD-, CD11C-, CD185+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001288"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD22"", ""tokens"": [""CD22""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001338"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD21"", ""tokens"": [""CD21""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001338"", ""tokens"": [""CD21""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001898"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD10"", ""tokens"": [""CD10""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001898"", ""tokens"": [""CD10""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}]" +SOULCAP:SC000033 BDN1 Double Negative B cell 1 BDN Exact 3 CL:0002102 CD38-negative naive B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24+, IGD-, CD21+, CD11C-, CD185+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}]" +SOULCAP:SC000034 BDN2 Double Negative B cell 2 BDN Exact 1 CL:0002102 CD38-negative naive B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24-, IGD-, CD21-, CD11C+, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}]" +SOULCAP:SC000034 BDN2 Double Negative B cell 2 BDN Exact 2 CL:0002109 B220-positive CD38-positive naive B cell 19 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38:low/CD38-/CD10- (no axiom on any alt.), CD24-, IGD-, CD21-, CD11C+, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}]" +SOULCAP:SC000034 BDN2 Double Negative B cell 2 BDN Exact 3 CL:0002110 B220-low CD38-positive naive B cell 19 1 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38:low/CD38-/CD10- (no axiom on any alt.), CD24-, IGD-, CD21-, CD11C+, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}]" +SOULCAP:SC000035 BDN3 Double Negative B cell 3 BDN Exact 1 CL:0002102 CD38-negative naive B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24+, IGD-, CD21-, CD11C-, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}]" +SOULCAP:SC000035 BDN3 Double Negative B cell 3 BDN Exact 2 CL:0000958 T1 B cell 19 1 CD3-, CD20+ (1 of 2 alt.), CD24+ (hi), CD21-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.), IGD-, CD11C-, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001932"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001318"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001338"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD21"", ""tokens"": [""CD21""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001338"", ""tokens"": [""CD21""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001880"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD23"", ""tokens"": [""CD23""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002037"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD93"", ""tokens"": [""CD93""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW93"", ""tokens"": [""CDW93""]}]}]" +SOULCAP:SC000035 BDN3 Double Negative B cell 3 BDN Exact 3 CL:0002109 B220-positive CD38-positive naive B cell 19 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38:low/CD38-/CD10- (no axiom on any alt.), CD24+, IGD-, CD21-, CD11C-, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}]" +SOULCAP:SC000036 BDN4 Double Negative B cell 4 BDN Exact 1 CL:0000961 Bm1 B cell 23 1 CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 3 alt.), CD21+, CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD24+, IGD-, CD11C-, CD185+, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001879"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001880"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD23"", ""tokens"": [""CD23""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002037"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD93"", ""tokens"": [""CD93""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW93"", ""tokens"": [""CDW93""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001338"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD21"", ""tokens"": [""CD21""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001338"", ""tokens"": [""CD21""]}]}]" +SOULCAP:SC000036 BDN4 Double Negative B cell 4 BDN Exact 2 CL:0002055 CD38-negative immature B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD38- (1 of 3 alt.), CD21+ (dim), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD24+, IGD-, CD11C-, CD185+, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001288"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD22"", ""tokens"": [""CD22""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001338"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD21"", ""tokens"": [""CD21""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001338"", ""tokens"": [""CD21""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001898"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD10"", ""tokens"": [""CD10""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001898"", ""tokens"": [""CD10""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}]" +SOULCAP:SC000036 BDN4 Double Negative B cell 4 BDN Exact 3 CL:0002102 CD38-negative naive B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 3 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24+, IGD-, CD21+, CD11C-, CD185+, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}]" +SOULCAP:SC000037 Bmem Memory B cell Exact 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000037 Bmem Memory B cell Exact 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000037 Bmem Memory B cell Exact 3 CL:0002108 CD38-negative IgG memory B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000038 IgD only IgD only Memory B cell Bmem Exact 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD+, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000038 IgD only IgD only Memory B cell Bmem Exact 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD+, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000038 IgD only IgD only Memory B cell Bmem Exact 3 CL:0002108 CD38-negative IgG memory B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD+, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000039 Unswitched Unswitched Memory B cell Bmem Exact 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 25 3 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD+, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000039 Unswitched Unswitched Memory B cell Bmem Exact 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 25 3 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD+, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000039 Unswitched Unswitched Memory B cell Bmem Exact 3 CL:0002111 CD38-negative unswitched memory B cell 21 3 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD+, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""unswitched memory b cell"", ""exact"": false, ""token_jaccard"": 0.75}" "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000040 IgM only IgM-only Memory B cell Bmem Exact 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000040 IgM only IgM-only Memory B cell Bmem Exact 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000040 IgM only IgM-only Memory B cell Bmem Exact 3 CL:0002108 CD38-negative IgG memory B cell 20 2 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000041 Switched Switched Memory B cell Bmem Exact 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 25 3 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000041 Switched Switched Memory B cell Bmem Exact 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 25 3 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000041 Switched Switched Memory B cell Bmem Exact 3 CL:0002111 CD38-negative unswitched memory B cell 21 3 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000042 IgA IgA-Class Switched B cell Switched Surface Only (SO) 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA+, IGG-, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000042 IgA IgA-Class Switched B cell Switched Surface Only (SO) 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA+, IGG-, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000042 IgA IgA-Class Switched B cell Switched Surface Only (SO) 3 CL:0002118 CD38-negative IgG-negative class switched memory B cell 21 3 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM-, IGA+, IGG-, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000043 IgG IgG-Class Switched B cell Switched Surface Only (SO) 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA-, IGG+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000043 IgG IgG-Class Switched B cell Switched Surface Only (SO) 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA-, IGG+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000043 IgG IgG-Class Switched B cell Switched Surface Only (SO) 3 CL:0002118 CD38-negative IgG-negative class switched memory B cell 22 4 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM-, IGA-, IGG+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""igg class switched b cell"", ""exact"": false, ""token_jaccard"": 0.5714285714285714}" "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000044 IgE IgE-Class Switched B cell Switched Surface Only (SO) 1 CL:0002112 B220-positive CD38-negative unswitched memory B cell 24 2 CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA-, IGG-, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000044 IgE IgE-Class Switched B cell Switched Surface Only (SO) 2 CL:0002113 B220-low CD38-negative unswitched memory B cell 24 2 CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA-, IGG-, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001014"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RABC"", ""tokens"": [""CD45RABC""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000044 IgE IgE-Class Switched B cell Switched Surface Only (SO) 3 CL:0002118 CD38-negative IgG-negative class switched memory B cell 21 3 CD3-, CD20+ (1 of 2 alt.), CD27+, CD38- (1 of 2 alt.), CD20+ CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM-, IGA-, IGG-, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD123- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001963"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}]" +SOULCAP:SC000045 T cell T lymphocyte Exact 1 CL:0002467 Gr1-high myeloid suppressor cell 7 1 CD45+, CD11C:not:high (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002980"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001013"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}]" +SOULCAP:SC000045 T cell T lymphocyte Exact 2 CL:0000097 mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""True"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]" +SOULCAP:SC000045 T cell T lymphocyte Exact 3 CL:0000484 connective tissue type mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]" +SOULCAP:SC000046 CD56+ T cell CD56+ T cell T cell Exact 1 CL:0002467 Gr1-high myeloid suppressor cell 7 1 CD45+, CD11C:not:high (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002980"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001013"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}]" +SOULCAP:SC000046 CD56+ T cell CD56+ T cell T cell Exact 2 CL:0000097 mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""True"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]" +SOULCAP:SC000046 CD56+ T cell CD56+ T cell T cell Exact 3 CL:0000484 connective tissue type mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]" +SOULCAP:SC000047 CD56+ CD4 T cell CD56+ CD4 T cell CD4+ T cell Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001932"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""low"", ""pr"": ""PR:000025402"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001307"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001874"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000003469"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000047 CD56+ CD4 T cell CD56+ CD4 T cell CD4+ T cell Exact 2 CL:0002430 CD4-intermediate, CD8-positive double-positive thymocyte 9 1 CD4+ (dim), CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001343"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD69"", ""tokens"": [""CD69""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000047 CD56+ CD4 T cell CD56+ CD4 T cell CD4+ T cell Exact 3 CL:0002431 CD4-positive, CD8-intermediate double-positive thymocyte 9 1 CD4+, CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000025402"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001343"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD69"", ""tokens"": [""CD69""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000048 CD56+ CD8 T cell CD56+ CD8 T cell CD8+ T cell Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 14 2 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000048 CD56+ CD8 T cell CD56+ CD8 T cell CD8+ T cell Exact 2 CL:0001050 effector CD8-positive, alpha-beta T cell 14 2 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001203"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000048 CD56+ CD8 T cell CD56+ CD8 T cell CD8+ T cell Exact 3 CL:0001203 CD8-positive, alpha-beta memory T cell, CD45RO-positive 14 2 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001017"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RO"", ""tokens"": [""CD45RO""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000049 CD56+ TCRab CD56+ alpha/beta T cell TCRab Exact 1 CL:0002467 Gr1-high myeloid suppressor cell 7 1 CD45+, CD11C:not:high (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002980"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001013"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}]" +SOULCAP:SC000049 CD56+ TCRab CD56+ alpha/beta T cell TCRab Exact 2 CL:0000097 mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""True"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]" +SOULCAP:SC000049 CD56+ TCRab CD56+ alpha/beta T cell TCRab Exact 3 CL:0000484 connective tissue type mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]" +SOULCAP:SC000050 CD56+ CD4+ TCRab CD56+ CD4+ alpha/beta T cell CD4+ TCRab T cell Exact 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}]" +SOULCAP:SC000050 CD56+ CD4+ TCRab CD56+ CD4+ alpha/beta T cell CD4+ TCRab T cell Exact 2 CL:0001044 effector CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""cd56 cd4 alpha beta t cell"", ""exact"": false, ""token_jaccard"": 0.5714285714285714}" "[{""sense"": ""negative"", ""pr"": ""PR:000001203"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}]" +SOULCAP:SC000050 CD56+ CD4+ TCRab CD56+ CD4+ alpha/beta T cell CD4+ TCRab T cell Exact 3 CL:0001046 memory CCR4-positive regulatory T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001017"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RO"", ""tokens"": [""CD45RO""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001200"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001380"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}]" +SOULCAP:SC000051 CD56+ CD8+ TCRab CD56+ CD8+ alpha/beta T cell CD8+ TCRab T cell Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000051 CD56+ CD8+ TCRab CD56+ CD8+ alpha/beta T cell CD8+ TCRab T cell Exact 2 CL:0001050 effector CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""cd56 cd8 alpha beta t cell"", ""exact"": false, ""token_jaccard"": 0.5714285714285714}" "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001203"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000051 CD56+ CD8+ TCRab CD56+ CD8+ alpha/beta T cell CD8+ TCRab T cell Exact 3 CL:0001203 CD8-positive, alpha-beta memory T cell, CD45RO-positive 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001017"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RO"", ""tokens"": [""CD45RO""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000052 CD56+ CD4+/CD8+ TCRab CD56+ CD4+/CD8+ alpha/beta T cell CD4+/CD8+ TCRab T cell Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001932"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""low"", ""pr"": ""PR:000025402"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001307"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001874"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000003469"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000052 CD56+ CD4+/CD8+ TCRab CD56+ CD4+/CD8+ alpha/beta T cell CD4+/CD8+ TCRab T cell Exact 2 CL:0000809 double-positive, alpha-beta thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000052 CD56+ CD4+/CD8+ TCRab CD56+ CD4+/CD8+ alpha/beta T cell CD4+/CD8+ TCRab T cell Exact 3 CL:0002427 resting double-positive thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000053 CD56+ CD4-/CD8- TCRab CD56+ CD4-/CD8- alpha/beta T cell CD4-/CD8- TCRab T cell Exact 1 CL:0000803 CD4-negative CD8-negative gamma-delta intraepithelial T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}]" +SOULCAP:SC000053 CD56+ CD4-/CD8- TCRab CD56+ CD4-/CD8- alpha/beta T cell CD4-/CD8- TCRab T cell Exact 2 CL:0000924 CD4-negative, CD8-negative type I NK T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000053 CD56+ CD4-/CD8- TCRab CD56+ CD4-/CD8- alpha/beta T cell CD4-/CD8- TCRab T cell Exact 3 CL:0000928 activated CD4-negative, CD8-negative type I NK T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001343"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD69"", ""tokens"": [""CD69""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000054 CD56+ TCRgd CD56+ gamma/delta T cell TCRgd Exact 1 CL:0002467 Gr1-high myeloid suppressor cell 7 1 CD45+, CD11C:not:high (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002980"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001013"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}]" +SOULCAP:SC000054 CD56+ TCRgd CD56+ gamma/delta T cell TCRgd Exact 2 CL:0000097 mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""True"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]" +SOULCAP:SC000054 CD56+ TCRgd CD56+ gamma/delta T cell TCRgd Exact 3 CL:0000484 connective tissue type mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]" +SOULCAP:SC000055 CD56+ CD4+ TCRgd CD56+ CD4+ gamma/delta T cell CD4+ TCRgd T cell Exact 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}]" +SOULCAP:SC000055 CD56+ CD4+ TCRgd CD56+ CD4+ gamma/delta T cell CD4+ TCRgd T cell Exact 2 CL:0001044 effector CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001203"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}]" +SOULCAP:SC000055 CD56+ CD4+ TCRgd CD56+ CD4+ gamma/delta T cell CD4+ TCRgd T cell Exact 3 CL:0001046 memory CCR4-positive regulatory T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001017"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RO"", ""tokens"": [""CD45RO""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001200"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001380"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}]" +SOULCAP:SC000056 CD56+ CD8+ TCRgd CD56+ CD8+ gamma/delta T cell CD8+ TCRgd T cell Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000056 CD56+ CD8+ TCRgd CD56+ CD8+ gamma/delta T cell CD8+ TCRgd T cell Exact 2 CL:0001050 effector CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001203"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000056 CD56+ CD8+ TCRgd CD56+ CD8+ gamma/delta T cell CD8+ TCRgd T cell Exact 3 CL:0001203 CD8-positive, alpha-beta memory T cell, CD45RO-positive 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001017"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RO"", ""tokens"": [""CD45RO""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000057 CD56+ CD4+/CD8+ TCRgd CD56+ CD4+/CD8+ gamma/delta T cell CD4+/CD8+ TCRgd Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001932"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""low"", ""pr"": ""PR:000025402"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001307"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001874"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000003469"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000057 CD56+ CD4+/CD8+ TCRgd CD56+ CD4+/CD8+ gamma/delta T cell CD4+/CD8+ TCRgd Exact 2 CL:0000809 double-positive, alpha-beta thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000057 CD56+ CD4+/CD8+ TCRgd CD56+ CD4+/CD8+ gamma/delta T cell CD4+/CD8+ TCRgd Exact 3 CL:0002427 resting double-positive thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000058 CD56+ CD8-/CD8- TCRgd CD56+ CD8-/CD8- gamma/delta T cell CD4-/CD8- TCRgd Exact 1 CL:0000803 CD4-negative CD8-negative gamma-delta intraepithelial T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""cd56 cd8 cd8 gamma delta t cell"", ""exact"": false, ""token_jaccard"": 0.5}" "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}]" +SOULCAP:SC000058 CD56+ CD8-/CD8- TCRgd CD56+ CD8-/CD8- gamma/delta T cell CD4-/CD8- TCRgd Exact 2 CL:0000924 CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000058 CD56+ CD8-/CD8- TCRgd CD56+ CD8-/CD8- gamma/delta T cell CD4-/CD8- TCRgd Exact 3 CL:0000928 activated CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001343"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD69"", ""tokens"": [""CD69""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000059 iNKT Invariant Natural Killer T cell T cell Exact invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000060 TCRab alpha/beta T cell T cell Exact 1 CL:0002467 Gr1-high myeloid suppressor cell 7 1 CD45+, CD11C:not:high (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002980"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001013"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}]" +SOULCAP:SC000060 TCRab alpha/beta T cell T cell Exact 2 CL:0000097 mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""True"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]" +SOULCAP:SC000060 TCRab alpha/beta T cell T cell Exact 3 CL:0000484 connective tissue type mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]" +SOULCAP:SC000061 TCRgd gamma/delta T cell T cell Exact 1 CL:0002467 Gr1-high myeloid suppressor cell 7 1 CD45+, CD11C:not:high (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002980"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001013"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}]" +SOULCAP:SC000061 TCRgd gamma/delta T cell T cell Exact 2 CL:0000097 mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""True"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]" +SOULCAP:SC000061 TCRgd gamma/delta T cell T cell Exact 3 CL:0000484 connective tissue type mast cell 5 1 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]" +SOULCAP:SC000062 CD4+ T cell alpha/beta and gamma/delta CD4+ T cells T cell Exact 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}]" +SOULCAP:SC000062 CD4+ T cell alpha/beta and gamma/delta CD4+ T cells T cell Exact 2 CL:0001044 effector CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001203"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}]" +SOULCAP:SC000062 CD4+ T cell alpha/beta and gamma/delta CD4+ T cells T cell Exact 3 CL:0001046 memory CCR4-positive regulatory T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001017"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RO"", ""tokens"": [""CD45RO""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001200"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001380"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}]" +SOULCAP:SC000063 CD8+ T cell alpha/beta and gamma/delta CD8+ T cells T cell Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000063 CD8+ T cell alpha/beta and gamma/delta CD8+ T cells T cell Exact 2 CL:0001050 effector CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001203"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000063 CD8+ T cell alpha/beta and gamma/delta CD8+ T cells T cell Exact 3 CL:0001203 CD8-positive, alpha-beta memory T cell, CD45RO-positive 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001017"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RO"", ""tokens"": [""CD45RO""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000064 CD4+/CD8+ T cell alpha/beta and gamma/delta CD4+ and CD8+ T cells T cell Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001932"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""low"", ""pr"": ""PR:000025402"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001307"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001874"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000003469"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000064 CD4+/CD8+ T cell alpha/beta and gamma/delta CD4+ and CD8+ T cells T cell Exact 2 CL:0000809 double-positive, alpha-beta thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000064 CD4+/CD8+ T cell alpha/beta and gamma/delta CD4+ and CD8+ T cells T cell Exact 3 CL:0002427 resting double-positive thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000065 CD4-/CD8- T cell alpha/beta and gamma/delta CD4- and CD8- T cells T cell Exact 1 CL:0000803 CD4-negative CD8-negative gamma-delta intraepithelial T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""alpha beta and gamma delta cd4 and cd8 t cells"", ""exact"": false, ""token_jaccard"": 0.5}" "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}]" +SOULCAP:SC000065 CD4-/CD8- T cell alpha/beta and gamma/delta CD4- and CD8- T cells T cell Exact 2 CL:0000924 CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000065 CD4-/CD8- T cell alpha/beta and gamma/delta CD4- and CD8- T cells T cell Exact 3 CL:0000928 activated CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001343"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD69"", ""tokens"": [""CD69""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000066 CD4+ TCRab T cell CD4+ alpha/beta T cell TCRab Exact 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}]" +SOULCAP:SC000066 CD4+ TCRab T cell CD4+ alpha/beta T cell TCRab Exact 2 CL:0001044 effector CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""cd4 alpha beta t cell"", ""exact"": false, ""token_jaccard"": 0.6666666666666666}" "[{""sense"": ""negative"", ""pr"": ""PR:000001203"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}]" +SOULCAP:SC000066 CD4+ TCRab T cell CD4+ alpha/beta T cell TCRab Exact 3 CL:0001046 memory CCR4-positive regulatory T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001017"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RO"", ""tokens"": [""CD45RO""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001200"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001380"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}]" +SOULCAP:SC000067 CD8+ TCRab T cell CD8+ alpha/beta T cell TCRab Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000067 CD8+ TCRab T cell CD8+ alpha/beta T cell TCRab Exact 2 CL:0001050 effector CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""cd8 alpha beta t cell"", ""exact"": false, ""token_jaccard"": 0.6666666666666666}" "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001203"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000067 CD8+ TCRab T cell CD8+ alpha/beta T cell TCRab Exact 3 CL:0001203 CD8-positive, alpha-beta memory T cell, CD45RO-positive 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001017"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RO"", ""tokens"": [""CD45RO""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000068 CD4+/CD8+ TCRab T cell CD4+ and CD8+ alpha/beta T cell TCRab Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001932"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""low"", ""pr"": ""PR:000025402"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001307"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001874"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000003469"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000068 CD4+/CD8+ TCRab T cell CD4+ and CD8+ alpha/beta T cell TCRab Exact 2 CL:0000809 double-positive, alpha-beta thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000068 CD4+/CD8+ TCRab T cell CD4+ and CD8+ alpha/beta T cell TCRab Exact 3 CL:0002427 resting double-positive thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000069 CD4-/CD8- TCRab T cell CD4- and CD8- alpha/beta T cell TCRab Exact 1 CL:0000803 CD4-negative CD8-negative gamma-delta intraepithelial T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}]" +SOULCAP:SC000069 CD4-/CD8- TCRab T cell CD4- and CD8- alpha/beta T cell TCRab Exact 2 CL:0000924 CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000069 CD4-/CD8- TCRab T cell CD4- and CD8- alpha/beta T cell TCRab Exact 3 CL:0000928 activated CD4-negative, CD8-negative type I NK T cell 11 3 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001343"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD69"", ""tokens"": [""CD69""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000070 CD4+ TCRgd T cell CD4+ gamma/delta T cell TCRgd Exact 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}]" +SOULCAP:SC000070 CD4+ TCRgd T cell CD4+ gamma/delta T cell TCRgd Exact 2 CL:0001044 effector CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001203"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}]" +SOULCAP:SC000070 CD4+ TCRgd T cell CD4+ gamma/delta T cell TCRgd Exact 3 CL:0001046 memory CCR4-positive regulatory T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001017"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RO"", ""tokens"": [""CD45RO""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001200"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001380"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}]" +SOULCAP:SC000071 CD8+ TCRgd T cell CD8+ gamma/delta T cell TCRgd Exact 1 CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000071 CD8+ TCRgd T cell CD8+ gamma/delta T cell TCRgd Exact 2 CL:0001050 effector CD8-positive, alpha-beta T cell 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001203"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000071 CD8+ TCRgd T cell CD8+ gamma/delta T cell TCRgd Exact 3 CL:0001203 CD8-positive, alpha-beta memory T cell, CD45RO-positive 13 1 CD45+, CD4-, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001017"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RO"", ""tokens"": [""CD45RO""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000072 CD4+/CD8+ TCRgd CD4+/CD8+ gamma/delta T cell TCRgd Exact 1 CL:0002039 immature NK T cell stage I, mouse 9 1 CD4+ (dim), CD8+ (dim) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001932"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""low"", ""pr"": ""PR:000025402"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001307"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001874"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000003469"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000072 CD4+/CD8+ TCRgd CD4+/CD8+ gamma/delta T cell TCRgd Exact 2 CL:0000809 double-positive, alpha-beta thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000072 CD4+/CD8+ TCRgd CD4+/CD8+ gamma/delta T cell TCRgd Exact 3 CL:0002427 resting double-positive thymocyte 8 0 CD4+, CD8+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]" +SOULCAP:SC000073 CD4-/CD8- TCRgd CD4-/CD8- gamma/delta T cell TCRgd Exact 1 CL:0000803 CD4-negative CD8-negative gamma-delta intraepithelial T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms"", ""local_lexical""]" "{""query"": ""cd4 cd8 gamma delta t cell"", ""exact"": false, ""token_jaccard"": 0.7142857142857143}" "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}]" +SOULCAP:SC000073 CD4-/CD8- TCRgd CD4-/CD8- gamma/delta T cell TCRgd Exact 2 CL:0000924 CD4-negative, CD8-negative type I NK T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000073 CD4-/CD8- TCRgd CD4-/CD8- gamma/delta T cell TCRgd Exact 3 CL:0000928 activated CD4-negative, CD8-negative type I NK T cell 10 2 CD4-, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001343"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD69"", ""tokens"": [""CD69""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000074 MAIT Mucosal-associated Invariant T cell T Lymph Exact invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000075 Conv TCRab T Lymph Exact invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000076 CD4+ Conv TCRab ConT TCRab Exact invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000077 CD8+ Conv TCRab ConT TCRab Exact invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000078 CD4+/CD8+ Conv TCRab ConT TCRab Exact invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000079 CD4-/CD8- Conv TCRab ConT TCRab Exact invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000080 Tcm Central memory alpha/beta and gamma/delta T cells T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000080 Tcm Central memory alpha/beta and gamma/delta T cells T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000080 Tcm Central memory alpha/beta and gamma/delta T cells T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000081 CD4+ Tcm CD4+ central memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000081 CD4+ Tcm CD4+ central memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000081 CD4+ Tcm CD4+ central memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000082 CD4+ TCRab Tcm CD4+ central memory alpha/beta T cell CD4+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000082 CD4+ TCRab Tcm CD4+ central memory alpha/beta T cell CD4+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000082 CD4+ TCRab Tcm CD4+ central memory alpha/beta T cell CD4+ TCRab T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000083 CD4+ TCRgd Tcm CD4+ central memory gamma/delta T cell CD4+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000083 CD4+ TCRgd Tcm CD4+ central memory gamma/delta T cell CD4+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000083 CD4+ TCRgd Tcm CD4+ central memory gamma/delta T cell CD4+ TCRgd T cell 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000084 CD8+ Tcm CD8+ central memory T cell CD8+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000084 CD8+ Tcm CD8+ central memory T cell CD8+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000084 CD8+ Tcm CD8+ central memory T cell CD8+ T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000085 CD8+ TCRab Tcm CD8+ central memory alpha/beta T cell CD8+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000085 CD8+ TCRab Tcm CD8+ central memory alpha/beta T cell CD8+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000085 CD8+ TCRab Tcm CD8+ central memory alpha/beta T cell CD8+ TCRab T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000086 CD8+ TCRgd Tcm CD8+ central memory gamma/delta T cell CD8+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000086 CD8+ TCRgd Tcm CD8+ central memory gamma/delta T cell CD8+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000086 CD8+ TCRgd Tcm CD8+ central memory gamma/delta T cell CD8+ TCRgd T cell 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000087 Tnaive Naive alpha/beta and gamma/delta T cell T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000087 Tnaive Naive alpha/beta and gamma/delta T cell T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000087 Tnaive Naive alpha/beta and gamma/delta T cell T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000088 CD4+ Tnaive CD4+ Naive alpha/beta and gamma/delta T cell CD4+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000088 CD4+ Tnaive CD4+ Naive alpha/beta and gamma/delta T cell CD4+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000088 CD4+ Tnaive CD4+ Naive alpha/beta and gamma/delta T cell CD4+ T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000089 CD4+ TCRab Tnaive CD4+ naive alpha/beta T cell CD4 TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000089 CD4+ TCRab Tnaive CD4+ naive alpha/beta T cell CD4 TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000089 CD4+ TCRab Tnaive CD4+ naive alpha/beta T cell CD4 TCRab T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000090 CD4+ TCRgd Tnaive CD4+ naive gamma/delta T cell CD4+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000090 CD4+ TCRgd Tnaive CD4+ naive gamma/delta T cell CD4+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000090 CD4+ TCRgd Tnaive CD4+ naive gamma/delta T cell CD4+ TCRgd T cell 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000091 CD8+ Tnaive CD8+ naive alpha/beta and gamma/delta T cell CD8+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000091 CD8+ Tnaive CD8+ naive alpha/beta and gamma/delta T cell CD8+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000091 CD8+ Tnaive CD8+ naive alpha/beta and gamma/delta T cell CD8+ T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000092 CD8+ TCRab Tnaive CD8+ naive alpha/beta T cell CD8+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000092 CD8+ TCRab Tnaive CD8+ naive alpha/beta T cell CD8+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000092 CD8+ TCRab Tnaive CD8+ naive alpha/beta T cell CD8+ TCRab T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000093 CD8+ TCRgd Tnaive CD8+ naive gamma/delta T cell CD8+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000093 CD8+ TCRgd Tnaive CD8+ naive gamma/delta T cell CD8+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000093 CD8+ TCRgd Tnaive CD8+ naive gamma/delta T cell CD8+ TCRgd T cell 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000094 Tem Effector memory T cell T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000094 Tem Effector memory T cell T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000094 Tem Effector memory T cell T cell Exact 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001892"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD33"", ""tokens"": [""CD33""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001892"", ""tokens"": [""CD33""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001945"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002981"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001786"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD133"", ""tokens"": [""CD133""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001809"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD59"", ""tokens"": [""CD59""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001843"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD90"", ""tokens"": [""CD90""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW90"", ""tokens"": [""CDW90""]}]}]" +SOULCAP:SC000095 CD4+ Tem CD4+ effector memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000095 CD4+ Tem CD4+ effector memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000095 CD4+ Tem CD4+ effector memory alpha/beta and gamma/delta T cells CD4+ T cell Exact 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001892"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD33"", ""tokens"": [""CD33""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001892"", ""tokens"": [""CD33""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001945"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002981"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001786"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD133"", ""tokens"": [""CD133""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001809"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD59"", ""tokens"": [""CD59""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001843"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD90"", ""tokens"": [""CD90""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW90"", ""tokens"": [""CDW90""]}]}]" +SOULCAP:SC000096 CD4+ TCRab Tem CD4+ effector memory alpha/beta T cell CD4+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000096 CD4+ TCRab Tem CD4+ effector memory alpha/beta T cell CD4+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000096 CD4+ TCRab Tem CD4+ effector memory alpha/beta T cell CD4+ TCRab T cell Exact 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001892"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD33"", ""tokens"": [""CD33""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001892"", ""tokens"": [""CD33""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001945"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002981"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001786"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD133"", ""tokens"": [""CD133""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001809"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD59"", ""tokens"": [""CD59""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001843"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD90"", ""tokens"": [""CD90""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW90"", ""tokens"": [""CDW90""]}]}]" +SOULCAP:SC000097 CD4+ TCRgd Tem CD4+ effector memory gamma/delta T cell CD4+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000097 CD4+ TCRgd Tem CD4+ effector memory gamma/delta T cell CD4+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000097 CD4+ TCRgd Tem CD4+ effector memory gamma/delta T cell CD4+ TCRgd T cell 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001892"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD33"", ""tokens"": [""CD33""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001892"", ""tokens"": [""CD33""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001945"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002981"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001786"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD133"", ""tokens"": [""CD133""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001809"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD59"", ""tokens"": [""CD59""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001843"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD90"", ""tokens"": [""CD90""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW90"", ""tokens"": [""CDW90""]}]}]" +SOULCAP:SC000098 CD8+ Tem CD8+ effector memory T cell CD8+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000098 CD8+ Tem CD8+ effector memory T cell CD8+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000098 CD8+ Tem CD8+ effector memory T cell CD8+ T cell Exact 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001892"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD33"", ""tokens"": [""CD33""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001892"", ""tokens"": [""CD33""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001945"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002981"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001786"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD133"", ""tokens"": [""CD133""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001809"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD59"", ""tokens"": [""CD59""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001843"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD90"", ""tokens"": [""CD90""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW90"", ""tokens"": [""CDW90""]}]}]" +SOULCAP:SC000099 CD8+ TCRab Tem CD8+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000099 CD8+ TCRab Tem CD8+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000099 CD8+ TCRab Tem CD8+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001892"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD33"", ""tokens"": [""CD33""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001892"", ""tokens"": [""CD33""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001945"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002981"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001786"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD133"", ""tokens"": [""CD133""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001809"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD59"", ""tokens"": [""CD59""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001843"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD90"", ""tokens"": [""CD90""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW90"", ""tokens"": [""CDW90""]}]}]" +SOULCAP:SC000100 CD8+ TCRgd Tem CD8+ effector memory gamma/delta T cell CD8+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000100 CD8+ TCRgd Tem CD8+ effector memory gamma/delta T cell CD8+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000100 CD8+ TCRgd Tem CD8+ effector memory gamma/delta T cell CD8+ TCRgd T cell 3 CL:0001024 CD34-positive, CD38-negative hematopoietic stem cell 12 2 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", 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""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001786"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD133"", ""tokens"": [""CD133""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001809"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD59"", ""tokens"": [""CD59""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001843"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD90"", ""tokens"": [""CD90""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW90"", ""tokens"": [""CDW90""]}]}]" +SOULCAP:SC000101 Temra CD45RA+ effector memory alpha/beta and gamma/delta T cell T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": 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""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000101 Temra CD45RA+ effector memory alpha/beta and gamma/delta T cell T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000101 Temra CD45RA+ effector memory alpha/beta and gamma/delta T cell T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000102 CD4+ Temra CD4+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD4+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000102 CD4+ Temra CD4+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD4+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", 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""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000102 CD4+ Temra CD4+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD4+ T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000103 CD4+ TCRab Temra CD4+ CD45RA+ effector memory alpha/beta T cell CD4 TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000103 CD4+ TCRab Temra CD4+ CD45RA+ effector memory alpha/beta T cell CD4 TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000103 CD4+ TCRab Temra CD4+ CD45RA+ effector memory alpha/beta T cell CD4 TCRab T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000104 CD4+ TCRgd Temra CD4+ CD45RA+ effector memory gamma/delta T cell CD4+ TCRgd T cell 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000104 CD4+ TCRgd Temra CD4+ CD45RA+ effector memory gamma/delta T cell CD4+ TCRgd T cell 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", 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[{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000104 CD4+ TCRgd Temra CD4+ CD45RA+ effector memory gamma/delta T cell CD4+ TCRgd T cell 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000105 CD8+ Temra CD8+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD8+ T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000105 CD8+ Temra CD8+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD8+ T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000105 CD8+ Temra CD8+ CD45RA+ effector memory alpha/beta and gamma/delta T cell CD8+ T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000106 CD8+ TCRab Temra CD8+ CD45RA+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 1 CL:0001057 myeloid dendritic cell, human 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000106 CD8+ TCRab Temra CD8+ CD45RA+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 2 CL:0002000 Kit-positive erythroid progenitor cell 13 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000106 CD8+ TCRab Temra CD8+ CD45RA+ effector memory alpha/beta T cell CD8+ TCRab T cell Exact 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 11 1 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000107 T helper TCRab invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000108 T cytotoxic TCRab 1 CL:0001057 myeloid dendritic cell, human 12 0 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000108 T cytotoxic TCRab 2 CL:0002000 Kit-positive erythroid progenitor cell 12 0 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000108 T cytotoxic TCRab 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 10 0 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000109 ConT Treg-like CD4 ConT invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000110 ConT Tfh-like CD4 ConT invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000111 Th1-like CD4 ConT invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000112 Th2-like CD4 ConT invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000113 Th9-like invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000114 Th17-like CD4 ConT invalid expression in Required phenotypic markers: mixed '|' and space in a group +SOULCAP:SC000115 CD4 PanT helper CD4/CD8 PanT 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183:unknown/CXCR3:unknown (no axiom on any alt.), CD185:unknown/CXCR5:unknown (no axiom on any alt.), CD194:unknown/CCR4:unknown (no axiom on any alt.), CD196:unknown/CCR6:unknown (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}]" +SOULCAP:SC000115 CD4 PanT helper CD4/CD8 PanT 2 CL:0001044 effector CD4-positive, alpha-beta T cell 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183:unknown/CXCR3:unknown (no axiom on any alt.), CD185:unknown/CXCR5:unknown (no axiom on any alt.), CD194:unknown/CCR4:unknown (no axiom on any alt.), CD196:unknown/CCR6:unknown (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001203"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}]" +SOULCAP:SC000115 CD4 PanT helper CD4/CD8 PanT 3 CL:0001204 CD4-positive, alpha-beta memory T cell, CD45RO-positive 13 1 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183:unknown/CXCR3:unknown (no axiom on any alt.), CD185:unknown/CXCR5:unknown (no axiom on any alt.), CD194:unknown/CCR4:unknown (no axiom on any alt.), CD196:unknown/CCR6:unknown (no axiom on any alt.), HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001017"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RO"", ""tokens"": [""CD45RO""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}]" +SOULCAP:SC000116 Th1-like Surface Only 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183+, CD185-, CD194-, CD196-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, IFNG+, IL-4-, IL-5-, IL-13- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}]" +SOULCAP:SC000116 Th1-like Surface Only 2 CL:0001044 effector CD4-positive, alpha-beta T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183+, CD185-, CD194-, CD196-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, IFNG+, IL-4-, IL-5-, IL-13- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001203"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}]" +SOULCAP:SC000116 Th1-like Surface Only 3 CL:0001046 memory CCR4-positive regulatory T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183+, CD185-, CD194-, CD196-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, IFNG+, IL-4-, IL-5-, IL-13- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001017"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RO"", ""tokens"": [""CD45RO""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001200"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001380"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}]" +SOULCAP:SC000117 Th2-like 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD194+, CD196-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}]" +SOULCAP:SC000117 Th2-like 2 CL:0001044 effector CD4-positive, alpha-beta T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD194+, CD196-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001203"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}]" +SOULCAP:SC000117 Th2-like 3 CL:0001046 memory CCR4-positive regulatory T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD194+, CD196-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001017"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RO"", ""tokens"": [""CD45RO""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001200"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001380"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}]" +SOULCAP:SC000118 Th9-like 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD194+, CD196-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+ no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}]" +SOULCAP:SC000118 Th9-like 2 CL:0001044 effector CD4-positive, alpha-beta T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD194+, CD196-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+ no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001203"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}]" +SOULCAP:SC000118 Th9-like 3 CL:0001046 memory CCR4-positive regulatory T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD194+, CD196-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+ no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001017"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RO"", ""tokens"": [""CD45RO""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001200"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001380"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}]" +SOULCAP:SC000119 Th17-like 1 CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD194:low/CD194- (no axiom on any alt.), CD196+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, IL-17A+ no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}]" +SOULCAP:SC000119 Th17-like 2 CL:0001044 effector CD4-positive, alpha-beta T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD194:low/CD194- (no axiom on any alt.), CD196+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, IL-17A+ no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001203"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}]" +SOULCAP:SC000119 Th17-like 3 CL:0001046 memory CCR4-positive regulatory T cell 12 0 CD45+, CD4+, CD8- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD194:low/CD194- (no axiom on any alt.), CD196+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, IL-17A+ no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001017"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RO"", ""tokens"": [""CD45RO""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001200"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001380"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}]" +SOULCAP:SC000120 Tfh 1 CL:0001057 myeloid dendritic cell, human 12 0 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002015"", ""asserted"": ""False"", ""paths"": []}]" +SOULCAP:SC000120 Tfh 2 CL:0002000 Kit-positive erythroid progenitor cell 12 0 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123- HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001083"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD2"", ""tokens"": [""CD2""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001833"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD150"", ""tokens"": [""CD150""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW150"", ""tokens"": [""CDW150""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001839"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD5"", ""tokens"": [""CD5""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002978"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000002979"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000009127"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD41"", ""tokens"": [""CD41""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001345"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD105"", ""tokens"": [""CD105""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]" +SOULCAP:SC000120 Tfh 3 CL:0000938 CD16-negative, CD56-bright natural killer cell, human 10 0 CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16- CD123-, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.) no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]" +SOULCAP:SC000121 CD4 PanT Treg CD4/CD8 PanT 1 CL:0001046 memory CCR4-positive regulatory T cell 20 0 CD45+, CD4+, CD8-, CD127:low (dim) (1 of 2 alt.), CD25+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001017"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RO"", ""tokens"": [""CD45RO""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001200"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001380"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}]" +SOULCAP:SC000121 CD4 PanT Treg CD4/CD8 PanT 2 CL:0002677 naive regulatory T cell 20 0 CD45+, CD4+, CD8-, CD127:low (dim) (1 of 2 alt.), CD25+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001380"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}]" +SOULCAP:SC000121 CD4 PanT Treg CD4/CD8 PanT 3 CL:0000792 CD4-positive, CD25-positive, alpha-beta regulatory T cell 17 1 CD4+, CD8-, CD127:low (dim) (1 of 2 alt.), CD25+ CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16- no "[""marker_axioms""]" null "[{""sense"": ""low"", ""pr"": ""PR:000001869"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}]" +SOULCAP:SC000122 Vg9 Vd2 TCRgd 1 CL:0002467 Gr1-high myeloid suppressor cell 6 0 CD45+, CD11C:not:high (1 of 2 alt.) CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), TCRVD2+, TCRVG9+, CD15-/CD66B- (no axiom on any alt.), CD16-, TCR:unknown, V:unknown, DELTA1- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002980"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001013"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}]" +SOULCAP:SC000122 Vg9 Vd2 TCRgd 2 CL:0000097 mast cell 4 0 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), TCRVD2+, TCRVG9+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, TCR:unknown, V:unknown, DELTA1- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""True"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]" +SOULCAP:SC000122 Vg9 Vd2 TCRgd 3 CL:0000484 connective tissue type mast cell 4 0 CD123- CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), TCRVD2+, TCRVG9+, HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.), CD15-/CD66B- (no axiom on any alt.), CD16-, TCR:unknown, V:unknown, DELTA1- no "[""marker_axioms""]" null "[{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]" +SOULCAP:SC000123 Vd2 TCRgd invalid expression in Required phenotypic markers: invalid marker token '2+' +SOULCAP:SC000124 Vd3 TCRgd invalid expression in Required phenotypic markers: invalid marker token '1-' +SOULCAP:SC000125 Vg9 Vd1 invalid expression in Required phenotypic markers: invalid marker token '1+' +SOULCAP:SC000126 Vd1 TCRgd invalid expression in Required phenotypic markers: invalid marker token '1+' +SOULCAP:SC000127 Vg9 TCRgd invalid expression in Required phenotypic markers: invalid marker token '1-' diff --git a/reports/candidate_cl_mappings_narrative.md b/reports/candidate_cl_mappings_narrative.md new file mode 100644 index 0000000..8144958 --- /dev/null +++ b/reports/candidate_cl_mappings_narrative.md @@ -0,0 +1,624 @@ +> Archived pre-migration rationale. Current decisions are in mappings/curated_mappings.tsv; the generated candidate report is authoritative for the current proposal set. + +# Candidate CL Mappings + +Milestone 4 deliverable: proposed SOULCAP → Cell Ontology (CL) mappings, each +with a rationale and supporting evidence from the Milestone 1 marker→gene +table and Milestone 2 literature reports. See [ROADMAP.md](../ROADMAP.md) for +the milestone definition. + +Note: Milestone 3 (audit of the *existing* curated mappings) is blocked on the +Google Sheet gaining broad/exact-match and comment columns, so entries below +are proposed directly from marker + literature evidence rather than from a +formal audit pass. + +Candidates were shortlisted with `uv run soulcap-match` (scores CL terms in +[reports/cl_pro_relationships.tsv](cl_pro_relationships.tsv) against a +SOULCAP marker profile) and reviewed by hand — the tool ranks candidates but +does not pick the mapping automatically. Any CL gap surfaced along the way is +also logged in [cl_term_issues.md](cl_term_issues.md). + +--- + +## NK — Natural Killer Cell + +**SOULCAP definition** ([data/marker_combinations.csv](../data/marker_combinations.csv)): +`(CD14-|CD33-|CD64-) CD34- CD3- CD19-` exclusion; `live/ CD45+ CD56+/hi CD127-` +required phenotypic markers. Currently unmapped (`OLS CL identifier` empty). + +| Field | Value | +|---|---| +| Proposed CL term | natural killer cell | +| Proposed CL ID | `CL:0000623` | +| Match type | Exact | +| `soulcap-match` rank | 33 / 826 (score 13) — low despite being the correct match; see rationale | + +**Rationale:** SOULCAP's plain "NK" row has no subtype-discriminating markers +(no CD16, no CD57), so it corresponds to the general parent concept rather +than a bright/dim/decidual subtype. `CL:0000623` matches on all four +negative-exclusion markers (CD14-, CD3-, CD19-; CD20 is not part of the +SOULCAP profile). Its low `soulcap-match` score is *not* evidence against the +mapping — it reflects a real CL gap (see below), not a poor match. + +**Evidence:** +- Marker → gene: CD56 → `PR:000001024` → UniProt `P13591` → gene `NCAM1` + (`HGNC:7656`) — [marker_mappings/marker_protein_gene.csv](../marker_mappings/marker_protein_gene.csv) +- Literature: "Natural killer cells are prototypic members of the innate + lymphoid cell (ILC) family and characterized in humans by expression of the + phenotypic marker CD56 in the absence of CD3." — Van Acker HH et al. 2017 + (PMID:28791027) — [reports/literature/nk_cell_markers.md](literature/nk_cell_markers.md) + +**CL gap flagged:** `CL:0000623` asserts no positive marker axiom at all +(only CD14-/CD19-/CD3-/CD20- negatives), even though CD56 positivity is the +field-standard defining marker and CL already asserts it on this term's own +children (`CL:0000938`, `CL:0000939`). Logged in +[cl_term_issues.md](cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623) — +not yet filed as a repo issue. + +--- + +## NK2 — Natural Killer Cell 2 (CD56-bright) + +**SOULCAP definition:** as NK, plus required `CD56hi CD16-/lo CD57-`. + +| Field | Value | +|---|---| +| Proposed CL term | CD16-negative, CD56-bright natural killer cell, human | +| Proposed CL ID | `CL:0000938` | +| Match type | Exact | +| `soulcap-match` rank | 1 / 826 | + +**Rationale:** CL directly asserts CD56 (high) and matches on the shared +negative-exclusion markers; the CD16-negative axiom aligns with SOULCAP's +`CD16-/lo` requirement. Clean top-ranked match, no conflicts. + +**Evidence:** Marker→gene as above (CD56 → NCAM1); CD16 → FCGR3A (see +[marker_mappings/marker_protein_gene.csv](../marker_mappings/marker_protein_gene.csv)). +Literature distinguishing CD56bright/CD56dim NK subsets: +[reports/literature/nk_cell_markers.md](literature/nk_cell_markers.md). + +--- + +## CTNK / NK1 / NK3 — Cytotoxic Natural Killer Cell (CD16-positive) + +**SOULCAP definition:** as NK, plus required `CD16+` (NK1/NK3 additionally +split on `CD57-`/`CD57+`). + +| Field | Value | +|---|---| +| Proposed CL term | CD16-positive, CD56-dim natural killer cell, human | +| Proposed CL ID | `CL:0000939` | +| Match type | Exact (CTNK, broad parent of NK1/NK3) | +| `soulcap-match` rank | 1 / 826 | + +**Rationale:** CL asserts CD16 positive and CD56 low/dim; the SOULCAP CD16+ +requirement matches directly, and CD56+/hi is compatible with CL's "dim" +(present, lower level) rather than contradicting it. Confirmed only after +fixing a `soulcap-match` scoring bug that had conflated CL's "low/dim" sense +with "negative" — see commit history on +[src/soulcap_cl_mapping/cl_match.py](../src/soulcap_cl_mapping/cl_match.py). + +**Note:** CL:0000939 does not itself distinguish CD57- (NK1) from CD57+ +(NK3) — neither SOULCAP's NK1 nor NK3 has a more specific CL match available +yet based on current `cl_pro_relationships` data. Flagged for follow-up, not +yet logged as a formal CL gap. + +**Evidence:** Marker→gene as above; literature on CD16+CD56dim cytotoxic NK +subset: [reports/literature/nk_cell_markers.md](literature/nk_cell_markers.md). + +--- + +## ILCp — Innate Lymphoid Cell Progenitor + +**SOULCAP definition:** required `live/ CD45+ CD3- CD127+ CD56+ CD117+ +CD294-`. No exclusion columns populated; CD34 status is not tested. + +| Field | Value | +|---|---| +| Proposed CL term | CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human | +| Proposed CL ID | `CL:0001074` | +| Match type | Broad — **tentative, unconfirmed** | + +**Rationale:** Chosen on name match ("precursor" = SOULCAP's "Progenitor") +plus agreement on CD56+/CD117+. **Uncertainty:** SOULCAP's ILCp profile does +not test CD34 at all, so it cannot confirm or rule out `CL:0001074`'s +CD34-**positive** requirement — two other CL candidates are equally +marker-consistent and were not ruled out: +- `CL:0001073` CD34-**negative**, CD56+, CD117+ innate lymphoid cell, human — differs from CL:0001074 only in CD34 sign. +- `CL:0001082` immature innate lymphoid cell — generic "immature" label, no CD34 assertion either way. + +This should be treated as a **draft pick, not a confirmed mapping**, until +either the sheet gains a CD34 column value for this row or literature +resolves which CD34 state defines the SOULCAP-intended progenitor stage. + +--- + +## ILC family — Innate Lymphoid Cells + +**SOULCAP definitions:** ILC (parent, `CD3- CD127+`), ILC1 +(`CD56- CD117- CD294-`), ILC2 (`CD56- CD117lo/- CD294+`), ILC3 +(`CD56+/- CD117+ CD294-`), all sharing the same lineage-exclusion columns. + +| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source | +|---|---|---|---|---| +| ILC | innate lymphoid cell | `CL:0001065` | Exact | Lexical — marker-based scoring returned an unrelated dendritic cell term | +| ILC1 | group 1 innate lymphoid cell | `CL:0001067` | Exact | Lexical, OLS4-verified | +| ILC2 | group 2 innate lymphoid cell, **human** | `CL:0001081` | Exact | OLS4-verified directly — batch lexical search had picked the **mouse** term (`CL:0002089`) | +| ILC3 | group 3 innate lymphoid cell, **human** | `CL:0001078` | Exact | OLS4-verified directly — batch lexical search had over-specified to an NKp44-positive subtype (`CL:0001079`) SOULCAP's profile doesn't test | + +**Rationale:** For all four rows, marker-axiom scoring failed outright +(top candidates were unrelated dendritic-cell terms — `cl_pro_relationships.tsv` +has effectively no useful axioms for this lineage). The plain-name matches are +textbook-standard ILC group nomenclature and were confirmed by direct OLS4 +lookup rather than trusted from the raw batch lexical output, since that +output was independently wrong for both ILC2 (species) and ILC3 +(over-specific subtype) in ways a naive "top lexical hit" read would have +missed. + +**CL gap flagged — ILC1:** Unlike ILC2 and ILC3, **no human-specific "group 1 +innate lymphoid cell" term exists in CL** — only the species-generic +`CL:0001067`. This is an asymmetry in CL's own authoring (two of three ILC +groups have a human-specific term, one doesn't). Logged in +[cl_term_issues.md](cl_term_issues.md) and being filed as a repo issue (see +Open follow-ups). + +--- + +## DC family — Dendritic Cells + +**SOULCAP definitions:** cDC (parent, `CD11chi HLA-DR+`), cDC1 +(`CD1c- CD141+`), cDC2 (`CD1c+ CD141lo/-`), pDC (`CD123hi CD303+`, low CD33). + +| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source | +|---|---|---|---|---| +| cDC | conventional dendritic cell | `CL:0000990` | Exact | Lexical | +| cDC1 | CD141-positive myeloid dendritic cell | `CL:0002394` | Exact | OLS4-verified directly — batch lexical search had wrongly assigned cDC1 the *same* term as cDC2 | +| cDC2 | CD1c-positive myeloid dendritic cell | `CL:0002399` | Exact | Lexical, confirmed correct by cross-check against cDC1 | +| pDC | plasmacytoid dendritic cell, human | `CL:0001058` | Exact | OLS4-verified directly — see sheet naming issue below | + +**Rationale (cDC1/cDC2):** SOULCAP defines cDC1 as CD1c-**negative**, +CD141-**positive** (classic BDCA3⁺ cDC1) and cDC2 as CD1c-**positive**, +CD141-low/negative (classic BDCA1⁺ cDC2). The raw batch lexical search +returned `CL:0002399` (CD1c-positive) as the top hit for **both** cDC1 and +cDC2 queries — a false agreement caused by the free-text search not +discriminating "1" vs "2" in the query well. Direct OLS4 search for +"CD141-positive myeloid dendritic cell" resolved cDC1 correctly to +`CL:0002394`. + +**Sheet naming issue — pDC:** the sheet's Full Name for `pDC` is "**Peripheral** +Dendritic Cell," but its required markers (`CD123hi`, `CD303+`, low CD33) are +the textbook definition of *plasmacytoid* dendritic cells, not a generic +"peripheral" category. This typo/wrong word is what broke the batch lexical +search for this row (it searched "Peripheral Dendritic Cell" and found an +unrelated "migratory dendritic cell" hit). Likely should read "Plasmacytoid +Dendritic Cell" — **flagging for sheet correction, not changed here** (the +sheet is the source of truth and this repo cannot edit it directly; see +[README.md](../README.md#input-data)). + +**Sheet naming issue — CTNK:** the sheet's Full Name for `CTNK` is +"**Cytotoxice** Natural Killer Cell" (extra trailing "e"). Likely should read +"Cytotoxic Natural Killer Cell." This typo broke the batch lexical search for +that row entirely (zero OLS4 hits) — the marker-based match (`CL:0000939`, +above) was unaffected since it doesn't depend on the name. **Flagging for +sheet correction, not changed here**, same reasoning as pDC above. + +--- + +## Basophil + +**SOULCAP definition:** two sheet rows share the abbreviation `Basophil` (a +PBMC prep and a WB prep), with slightly different required/ideal columns but +the same intent: `live/ CD45+ (CD33+|CD123+) (CD193+|FceR1a+|HLA-DR-|CD303-)`, +excluding CD3- (and CD15-/CD66b- in the WB version's required columns). + +| Field | Value | +|---|---| +| Proposed CL term | mature basophil | +| Proposed CL ID | `CL:0000043` | +| Match type | Exact | + +**Rationale:** Originally, **neither** marker-axiom scoring nor the batch +lexical search found this match — both were checked and both missed it. It +was found by hand-inspecting [cl_pro_relationships.md](cl_pro_relationships.md) +directly: `CL:0000043` asserts CD193(high)/FceR1a(high)/CD123(high) positive +and CD19-/CD3-/CD8- negative — closely matching SOULCAP's required OR-group +and CD3- exclusion. `soulcap-match` now finds it too (see below). + +**Tooling limitation found and fixed:** SOULCAP's marker syntax uses +OR-groups like `(CD193+|FceR1a+|HLA-DR-|CD303-)`, meaning "at least one of +these true." `soulcap-match`'s scorer used to treat every marker inside such +a group as independently **required** (i.e. AND, not OR) — this is why it +never considered `CL:0000043` a candidate: CL doesn't assert *all four* of +CD193+/FceR1a+/HLA-DR-/CD303-, so the group was scored as mostly gaps/ +contradictions instead of "satisfied by one alternative." **Fixed** by adding +`extract_marker_clauses()`, which preserves `|`-joined groups as true OR +clauses (satisfied by any one alternative; contradicted only if *every* +alternative is actively contradicted) instead of flattening them — see +[src/soulcap_cl_mapping/cl_match.py](../src/soulcap_cl_mapping/cl_match.py). +Re-running `soulcap-match` on this exact profile now ranks `CL:0000043` +top of the field, showing `CD123+ (1 of 2 alt.)` and `CD193+ (1 of 4 alt.)` +as matched. + +--- + +## Open follow-ups + +- File the `CL:0000623` missing-CD56-axiom gap as a repo issue (see + [cl_term_issues.md](cl_term_issues.md)), then upstream to + `obophenotype/cell-ontology` once reviewed, following the pattern of + issues [#12](https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12) + and [#13](https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13). +- ILC1's missing human-specific CL term gap has been filed as a repo issue — + see [cl_term_issues.md](cl_term_issues.md) for the tracking link. +- NK1 vs. NK3 (CD57-/CD57+) have no CL term distinguishing them yet — worth a + second CL gap entry once confirmed against more literature. +- **Fixed:** the `soulcap-match` scorer's OR-group-as-AND limitation (found + via the Basophil case above) — `extract_marker_clauses()` now models + `|`-groups as true OR. Worth re-running `--batch --lexical` across all + rows and re-checking earlier entries in this report, since other good + matches may have been suppressed the same way, not just Basophil's. +- Two sheet naming typos found (CTNK "Cytotoxice", pDC "Peripheral") need + correcting in the Google Sheet master by whoever has edit access — see the + DC family section above. +- Extend this report to the remaining `Marker Combinations` rows once + Milestone 2 (literature evidence, Dr. Diehl) covers more cell types. + +--- + +## Monocyte family + +**SOULCAP definitions:** Mono (parent, `CD14+/- CD11c+/-` — both variable, +non-discriminating), CMo (`CD14+ CD16-`), NCMo (`CD14lo/- CD16+`), IntMo +(`CD14+ CD16hi`). All four share the same Required exclusion string. + +| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source | +|---|---|---|---|---| +| Mono | monocyte | `CL:0000576` | Exact | OAK-verified (exact label); OLS4 was timing out at lookup time; **sheet-confirmed 2026-08** | +| CMo | classical monocyte | `CL:0000860` | Exact | OAK-verified (exact label); **sheet-confirmed 2026-08** | +| NCMo | non-classical monocyte | `CL:0000875` | Exact | OAK-verified (exact label); **sheet-confirmed 2026-08** | +| IntMo | intermediate monocyte | `CL:0002393` | Exact | OAK-verified (exact label); **sheet-confirmed 2026-08** | + +**Rationale:** All four are clean name matches, cross-checked with OAK +(`sqlite:obo:cl`, exact label hits) after OLS4 REST search was returning +`ReadTimeout` errors when this batch was worked. Marker-axiom scoring +top-ranked unrelated myelocyte/basophil precursor terms for all four rows +(shared-negative-marker inflation, the same failure mode documented +elsewhere in this report) — these are lexical matches, not marker-confirmed. + +**Sheet confirmation (2026-09-08):** a fresh `soulcap-sync` found the master +Google Sheet's `OLS CL identifier` column — empty for every row as of July +21 — now independently populated for exactly these four rows, with these +exact four CL IDs. This is an outside curator (Kelly/David) confirming this +project's own proposal directly in the source of truth, not this project +editing the sheet. No other rows' `OLS CL identifier` changed in this diff. + +This should be recorded as a distinct, high-confidence evidence source (a +curator sign-off in the actual target column, stronger than this project's +own lexical/marker inference) once the mapping table's evidence model is +upgraded — see the codex-owned implementation plan for this repo, which +already covers per-mapping evidence tracking. Not yet reflected as a +confidence value anywhere; this note is the durable record in the meantime. + +**CL gap — already tracked, not new:** `CL:0000860`/`CL:0000875`/`CL:0002393` +currently assert only CCR2 (CD192, high on classical / negative on +intermediate) and CX3CR1 (high on non-classical) plus lineage-exclusion +negatives — **none of them assert the CD14/CD16 axioms that actually define +these three subsets** (per Ziegler-Heitbrock et al. 2010, PMID:20628149). +This is exactly what repo issue +[#12](https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12) +(filed upstream: [CL#3665](https://github.com/obophenotype/cell-ontology/issues/3665)) +already covers — no new issue needed, just citing it here since it directly +explains why these four rows can only be matched lexically, not confirmed by +CL's current marker axioms. `CL:0000576` (plain "monocyte") has no marker +axioms at all in `cl_pro_relationships.tsv` — the same axiom-gap pattern seen +on other general parent classes (NK, ILC, cDC) — logged in `gaps.tsv`. + +**Sheet data issue:** all four rows' `Required exclusion` column reads +`CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)` — the second group is +missing a `]` after `CD123hi` (should likely read `([CD123hi]-|CD193-)`, +matching the pattern used in the cDC/pDC rows). Affects the same 4 rows +identically since they share this string. Logged in `gaps.tsv`; cannot be +fixed here (Google Sheet is the source of truth). + +--- + +## Neutrophil / Eosinophil + +**SOULCAP definitions:** share `CD3- CD56- CD14lo/- CD123-` exclusion. +Neutrophil requires `(CD15hi|CD66b+) CD193- CD16hi`; Eosinophil requires +`(CD15hi|CD66b+) CD193+ CD16-` — differ only in CD193/CD16. + +| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source | +|---|---|---|---|---| +| Neutrophil | neutrophil | `CL:0000775` | Exact | Lexical + marker (CD66b matched via OR-group; CD19-/CD3- matched) | +| Eosinophil | eosinophil | `CL:0000771` | Exact | Lexical + marker (CD193+ **directly asserted**, not inferred — strong match) | + +**Rationale:** Both are clean lexical matches (OAK-confirmed exact label), +and unlike the monocyte family, CL *does* assert relevant markers here. +`CL:0000771` directly asserts CD193 (CCR3) positive — not flagged +`(inferred only)` — which precisely matches SOULCAP's Eosinophil-defining +CD193+ requirement; both terms assert CD66b positive, satisfying the +`(CD15hi|CD66b+)` OR-group shared by both SOULCAP rows. This is one of the +stronger marker-confirmed matches in this report, not just a lexical pick. + +--- + +## B cell (parent) + +**SOULCAP definition:** `(CD14-|CD33-|CD64-) CD3- CD56-` exclusion; +`live/ CD45+ (CD20+|CD19+)` required phenotypic markers. + +| Field | Value | +|---|---| +| Proposed CL term | B cell | +| Proposed CL ID | `CL:0000236` | +| Match type | Exact | + +**Rationale:** Batch lexical search (OLS4) returned **no candidate at all** +for this row — worth noting as its own small finding: OLS4's REST search +appears to return nothing useful for the bare two-word query "B cell" (not a +sheet typo this time; the row's Full Name is exactly "B cell"). Found instead +via `soulcap-oak-match "B cell"`, which returned `CL:0000236` as a clean +exact-label/exact-synonym hit. Marker-axiom scoring found no useful +candidates either (`CL:0000236` has no rows in `cl_pro_relationships.tsv` — +same parent-class axiom-gap pattern as NK/ILC/cDC/plain-monocyte). Logged in +`gaps.tsv`. + +--- + +## Plasma cell lineage — ASC / Plasmablast / Plasma Cell + +**SOULCAP definitions:** ASC (parent, `CD19+ CD27+/hi CD38hi`), PB +(`+ CD138-`), PC (`+ CD138+`, ideal `CD20-`). + +| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source | +|---|---|---|---|---| +| ASC | antibody secreting cell | `CL:0000946` | Exact | Lexical | +| PB | plasmablast | `CL:0000980` | Exact | Lexical | +| PC | plasma cell | `CL:0000786` | Exact | Lexical | + +**Rationale:** All three are clean exact-name lexical matches. Marker-axiom +scoring found nothing useful for any of the three (top candidates were +mouse-nomenclature "B220" memory B cell terms — see the B cell maturation +tree below for why that pattern recurs across this whole lineage) — these +are lexical matches, not marker-confirmed. PC's marker top-1 (`CL:0000962` +Bm2 B cell) showed a conflict on the *ideal* `CD20-` marker; non-disqualifying +and irrelevant once the correct lexical match is used instead. + +--- + +## B cell maturation tree — Transitional / Mature / Naive / Double-negative + +**SOULCAP definitions:** Transitional (parent, **no marker data in the +sheet at all** — see `gaps.tsv`), T1/T2 B (`CD27- (CD38hi|CD10hi) CD24hi`), +Mature B (parent, `CD27- CD38lo/-`), T3 (`CD27- (CD38lo/-|CD10lo) CD24+ +IgD+`), Naive (`CD27- (CD38lo/-|CD10-) CD24- IgD+`), BDN (parent, `CD27- +(CD38lo/-|CD10-) CD24- IgD-`), BDN1–4 (BDN + CD21/CD11c/CD185/IgE +combinations). + +| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source | +|---|---|---|---|---| +| T1/T2 B | transitional stage B cell | `CL:0000818` | Broad | OAK-verified — SOULCAP combines T1+T2 into one gate; CL:0000818 is the parent of both `CL:0000958` (T1) and `CL:0000959` (T2), which CL keeps separate | +| Mature B | mature B cell | `CL:0000785` | Exact | Lexical | +| T3 | T3 B cell | `CL:0000960` | Exact | Lexical | +| Naive | naive B cell | `CL:0000788` | Exact | Lexical | +| BDN | double negative memory B cell | `CL:0000981` | Exact | OAK-verified — batch lexical had wrongly picked `CL:0002103` "**IgG-positive** double negative memory B cell," an overly-specific child term | +| BDN1 / BDN2 / BDN3 / BDN4 | double negative memory B cell | `CL:0000981` | Broad | No CL subtype terms exist for this DN1–4 scheme — see CL gap below | + +**Rationale:** Marker-axiom scoring was useless across this entire tree — +every row's top candidates were CL terms using **mouse** B-cell-development +nomenclature (`B220-positive/negative CD38-positive/negative ...`), which +share enough generic negative markers with SOULCAP's human panel to score +well without being biologically relevant. All picks above are lexical, +cross-checked with direct OAK verification wherever the batch lexical output +looked suspicious. + +**CL gap — BDN1–4:** SOULCAP defines four "double negative" B cell subsets +(BDN1–4) using CD21/CD11c/CD185(CXCR5)/IgE combinations — this is the +DN1–DN4 atypical/age-associated B cell classification scheme from the +autoimmunity/aging literature. Direct searches for "DN1 B cell" through +"DN4 B cell" and "atypical memory B cell" returned **zero CL hits** — CL only +has the general parent `CL:0000981` "double negative memory B cell," with no +further subtyping. All four SOULCAP subsets currently collapse to the same +Broad match. Logged in `gaps.tsv`. + +**Note — Transitional (parent):** not mapped here (no marker data to derive +a match from, and the row is presumably meant as a pure category label like +Mature B / BDN / Bmem) — see `gaps.tsv` for the existing `no_reasonable_cl_match` +entry. If a plain label match is wanted despite the empty markers, `CL:0000818` +"transitional stage B cell" is the obvious lexical candidate, parallel to how +T1/T2 B was resolved above. + +--- + +## Memory B cell tree + +**SOULCAP definitions:** Bmem (parent, `CD27+ CD38lo/-`), then split by +Ig isotype: IgD only (`IgD+ IgM-`), Unswitched (`IgD+ IgM+`), IgM only +(`IgD- IgM+`), Switched (parent, `IgD- IgM-`), then IgA/IgG/IgE +(Switched + single Ig-class positive). + +| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source | +|---|---|---|---|---| +| Bmem | memory B cell | `CL:0000787` | Exact | Lexical | +| IgD only | — | — | — | **No CL match found — see gap below** | +| Unswitched | unswitched memory B cell | `CL:0000970` | Exact | Lexical, OAK-confirmed | +| IgM only | IgM memory B cell | `CL:0000971` | Exact | Lexical, OAK-confirmed | +| Switched | class switched memory B cell | `CL:0000972` | Exact | OAK-verified — batch lexical had wrongly picked `CL:0002117` "**IgG-negative** class switched memory B cell," an overly-specific child term | +| IgA | IgA memory B cell | `CL:0000973` | Exact | Lexical, OAK-confirmed | +| IgG | IgG memory B cell | `CL:0000979` | Exact | OAK-verified — batch lexical had wrongly picked `CL:0002117` "**IgG-negative** class switched memory B cell," the **opposite polarity** of what SOULCAP's IgG row defines | +| IgE | IgE memory B cell | `CL:0000948` | Exact | Lexical, OAK-confirmed | + +**Rationale:** Same pattern as the maturation tree — marker scoring found +nothing useful (mouse B220 terms again), so these are lexical matches. Two +of the batch's raw lexical picks (Switched, IgG) were caught and corrected +here: both had landed on `CL:0002117`, a specific IgG-**negative** subtype, +which is simply wrong for the IgG row (opposite Ig-class polarity) and +imprecise for Switched (too specific — excludes IgG-switched cells from the +"switched" parent category, which shouldn't exclude any Ig class). + +**CL gap — "IgD only" memory B cell:** SOULCAP distinguishes IgD⁺IgM⁻ +("IgD only") from IgD⁺IgM⁺ ("Unswitched") memory B cells as two separate +populations. Direct searches for "IgD-positive memory B cell" and "IgD only +memory B cell" returned **zero CL hits**; the only IgD-related term found is +`CL:0001053` "IgD-negative memory B cell" — the **opposite** polarity, not a +match. This looks like a genuine CL gap (no term for the IgD⁺IgM⁻ subset) +rather than a naming mismatch — flagged, not mapped. Logged in `gaps.tsv`. + +--- + +# T cell tree + +The T cell branch is much larger (83 remaining rows) and includes 26 rows +with **no `Full Name` populated in the sheet at all** — those are documented +separately below rather than guessed at. Marker-axiom scoring was uniformly +useless across every row in this branch (top candidates were consistently +unrelated myeloid/NK terms — `Gr1-low myeloid suppressor cell`, `myeloid +dendritic cell, human` — sharing generic lineage-exclusion markers with +almost every SOULCAP T cell row). Every mapping below is lexical/name-based, +verified directly via OAK rather than trusted from the raw batch output, +since the raw lexical picks were wrong or missing for a large fraction of +this branch too (see notes per group). + +## Core T cell lineage + +| SOULCAP | Proposed CL term | Proposed CL ID | Match type | +|---|---|---|---| +| T cell | T cell | `CL:0000084` | Exact | +| TCRab | alpha-beta T cell | `CL:0000789` | Exact | +| TCRgd | gamma-delta T cell | `CL:0000798` | Exact | +| iNKT | mature NK T cell | `CL:0000814` | Exact | +| MAIT | mucosal-associated invariant T cell | `CL:0000940` | Exact | +| CD4+ TCRab T cell | CD4-positive, alpha-beta T cell | `CL:0000624` | Exact | +| CD8+ TCRab T cell | CD8-positive, alpha-beta T cell | `CL:0000625` | Exact | +| CD4-/CD8- TCRgd | CD4-negative, CD8-negative gamma-delta T cell | `CL:0000803` | Exact | + +**Note — iNKT / `CL:0000814`:** this is the **same term** already flagged in +[repo issue #13](https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13) +as needing a rename to "iNKT cell" (currently labelled "mature NK T cell," +filed upstream, awaiting CL maintainer review — see `cl_term_issues.md`). The +mapping is correct either way; just noting it inherits that pending +correction. + +## Combined-lineage (αβ+γδ) and double-positive/double-negative gaps + +SOULCAP has four rows that combine alpha-beta **and** gamma-delta T cells +under one CD4/CD8 gate (`CD4+ T cell`, `CD8+ T cell`, `CD4+/CD8+ T cell`, +`CD4-/CD8- T cell`), plus double-positive and double-negative alpha-beta and +gamma-delta variants. CL organizes CD4/CD8 status **primarily under the +alpha-beta lineage** and does not have combined αβ+γδ terms, a clean +double-positive alpha-beta term, or a *peripheral* (non-thymic) double-negative +alpha-beta term — direct searches for "double positive T cell," "double +negative alpha-beta T cell," and "CD4-positive T cell" (unqualified) all +returned nothing or only thymocyte-stage terms (thymocytes are the wrong +tissue/maturity stage for a blood/PBMC flow panel). + +| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Note | +|---|---|---|---|---| +| CD4+ T cell | CD4-positive, alpha-beta T cell | `CL:0000624` | Broad | Alpha-beta dominates the CD4+ compartment; CL has no combined αβ+γδ CD4+ term | +| CD8+ T cell | CD8-positive, alpha-beta T cell | `CL:0000625` | Broad | Same reasoning | +| CD4+/CD8+ T cell | alpha-beta T cell | `CL:0000789` | Broad — **gap** | No CD4+CD8+ double-positive term found at all (peripheral DP T cells are themselves biologically unusual) | +| CD4-/CD8- T cell | T cell | `CL:0000084` | Broad — **gap** | No peripheral (non-thymic) double-negative term spanning both TCR types | +| CD4+/CD8+ TCRab T cell | alpha-beta T cell | `CL:0000789` | Broad — **gap** | Same DP gap, alpha-beta-restricted | +| CD4-/CD8- TCRab T cell | alpha-beta T cell | `CL:0000789` | Broad — **gap** | Only `CL:0002489` "double negative **thymocyte**" found — wrong tissue/stage | +| CD4+ TCRgd T cell | gamma-delta T cell | `CL:0000798` | Broad — **gap** | CD4+ gd T cells are atypical/rare in normal blood; no CL term found | +| CD8+ TCRgd T cell | gamma-delta T cell | `CL:0000798` | Broad — **gap** | No CL term found | +| CD4+/CD8+ TCRgd | gamma-delta T cell | `CL:0000798` | Broad — **gap** | No CL term found | + +All seven "gap" rows above are logged in `gaps.tsv` as one grouped entry +(CL's CD4/CD8 vocabulary being alpha-beta-centric), rather than seven +separate entries, since it's the same underlying structural gap. + +## CD56+ T cell family + +SOULCAP defines 13 CD56+ T cell variants crossing CD56 positivity with +CD4/CD8/DP/DN status and TCRab/TCRgd lineage. CL has exactly **one** term at +this level of granularity: + +| SOULCAP | Proposed CL term | Proposed CL ID | Match type | +|---|---|---|---| +| CD56+ T cell, CD56+ CD4 T cell, CD56+ CD8 T cell, CD56+ TCRab, CD56+ CD4+ TCRab, CD56+ CD8+ TCRab, CD56+ CD4+/CD8+ TCRab, CD56+ CD4-/CD8- TCRab, CD56+ TCRgd, CD56+ CD4+ TCRgd, CD56+ CD8+ TCRgd, CD56+ CD4+/CD8+ TCRgd, CD56+ CD8-/CD8- TCRgd | mature NK T cell, human | `CL:4052055` | Broad (all 13) | + +**Rationale:** `CL:4052055`'s current label is "Mature NK T cell, human" — +this is the **other** term from repo issue #13, already proposed for renaming +to "CD56-positive T cell, human" (filed upstream as +[CL#3663](https://github.com/obophenotype/cell-ontology/issues/3663), awaiting +review). It is the correct conceptual match for this whole family; CL simply +doesn't subdivide "CD56-positive T cell" by CD4/CD8/TCR-type the way +SOULCAP's panel does, so all 13 rows collapse to the same Broad match. The +raw batch lexical output was **unreliable** for this family (results ranged +from `hematopoietic stem cell` to `mature neutrophil` — direct OAK +verification via "mature NK T cell, human" was necessary, not optional). +Logged as one grouped `cl_axiom_gap`-style entry in `gaps.tsv`. + +## Naive / central memory / effector memory / TEMRA tree + +SOULCAP crosses four differentiation states (naive, central memory Tcm, +effector memory Tem, CD45RA+ effector memory/TEMRA) with CD4/CD8 status and, +separately, TCRab/TCRgd lineage — 24 rows. CL has clean, well-established +terms for the **CD4/CD8 × alpha-beta** combinations; it does not have +gamma-delta-specific or lineage-combined (αβ+γδ) versions of any of them. + +| SOULCAP | Proposed CL term | Proposed CL ID | Match type | +|---|---|---|---| +| Tnaive (general) | naive T cell | `CL:0000898` | Exact | +| CD4+ TCRab Tnaive | naive thymus-derived CD4-positive, alpha-beta T cell | `CL:0000895` | Exact | +| CD8+ TCRab Tnaive | naive thymus-derived CD8-positive, alpha-beta T cell | `CL:0000900` | Exact | +| CD4+ TCRab Tcm | central memory CD4-positive, alpha-beta T cell | `CL:0000904` | Exact | +| CD8+ TCRab Tcm | central memory CD8-positive, alpha-beta T cell | `CL:0000907` | Exact | +| CD4+ TCRab Tem | effector memory CD4-positive, alpha-beta T cell | `CL:0000905` | Exact | +| CD8+ TCRab Tem | effector memory CD8-positive, alpha-beta T cell | `CL:0000913` | Exact | +| CD4+ TCRab Temra | effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated | `CL:4030002` | Exact | +| CD4+ Tnaive (general) | naive thymus-derived CD4-positive, alpha-beta T cell | `CL:0000895` | Broad | +| CD8+ Tnaive (general) | naive thymus-derived CD8-positive, alpha-beta T cell | `CL:0000900` | Broad | +| CD4+ Tcm (general) | central memory CD4-positive, alpha-beta T cell | `CL:0000904` | Broad | +| CD8+ Tcm (general) | central memory CD8-positive, alpha-beta T cell | `CL:0000907` | Broad | +| CD4+ Tem (general) | effector memory CD4-positive, alpha-beta T cell | `CL:0000905` | Broad | +| CD8+ Tem (general) | effector memory CD8-positive, alpha-beta T cell | `CL:0000913` | Broad | +| CD4+ Temra (general) | effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated | `CL:4030002` | Broad | +| Tcm (general, no CD4/CD8) | T cell | `CL:0000084` | Broad — **gap** | +| Tem (general, no CD4/CD8) | T cell | `CL:0000084` | Broad — **gap** | +| Temra (general, no CD4/CD8) | T cell | `CL:0000084` | Broad — **gap** | +| CD4+ TCRgd Tnaive, CD4+ TCRgd Tcm, CD4+ TCRgd Tem, CD4+ TCRgd Temra | gamma-delta T cell | `CL:0000798` | Broad — **gap** | +| CD8+ TCRgd Tnaive, CD8+ TCRgd Tcm, CD8+ TCRgd Tem | gamma-delta T cell | `CL:0000798` | Broad — **gap** | +| CD8+ Temra (general), CD8+ TCRab Temra | effector memory CD8-positive, alpha-beta T cell | `CL:0000913` | Broad — **gap** | + +**Rationale:** Direct OAK searches confirm CL has **no** generic +"central/effector memory T cell" term spanning both CD4 and CD8 (only the +CD4-specific and CD8-specific versions exist), **no** gamma-delta-specific +differentiation-state terms at all, and — asymmetrically — **no CD8+-specific +TEMRA term** with the "terminally differentiated" qualifier that exists for +CD4+ (`CL:4030002`). That last asymmetry is worth a closer look; not filed as +a formal CL gap yet since it needs a second check against CL's own hierarchy +before concluding it's a genuine omission rather than something named +differently. All "gap" rows above are logged in `gaps.tsv`, grouped by +category rather than one row each. + +## Rows with no `Full Name` in the sheet — not mapped + +26 rows in this branch have an **empty `Full Name` field** in the master +sheet (`Conv TCRab` and its CD4+/CD8+/DP/DN children; `T helper`, `T +cytotoxic`, `Tfh`, `CD4 PanT helper`, `CD4 PanT Treg`; `ConT Treg-like`, +`ConT Tfh-like`, `Th1-like` / `Th2-like` / `Th9-like` / `Th17-like`; and the +`Vg9`/`Vd1`/`Vd2`/`Vd3`/`Vg9 Vd1`/`Vg9 Vd2` gamma-delta TCR-usage subsets). +**Not mapped here** — inventing a name for an unnamed row isn't a call this +report should make. + +Two things worth flagging explicitly: + +1. **A likely data bug**, not just a missing name: `Th1-like`, `Th2-like`, + `Th9-like`, and `Th17-like` each appear **twice** in the sheet. One copy + (parented under "CD4 ConT") has iNKT-style `TCRVa24-Ja18`/`CD1d-a-GalCer` + marker strings that look like they were copy-pasted from an adjacent iNKT + row rather than genuine Th-subset markers. The other copy (no parent) has + the biologically-correct Th-subset chemokine receptor panel (`CD183`/CXCR3, + `CD185`/CXCR5, `CD194`/CCR4, `CD196`/CCR6) matching the classic + Th1/Th2/Th9/Th17 definitions. This looks like a genuine sheet error, not + two intentional variants. +2. **For when these get named**, a few obvious CL matches are already + confirmed and ready: `T helper` → `CL:0000912` "helper T cell"; `T + cytotoxic` → `CL:0000910` "cytotoxic T cell". The rest would need their + own verification once named. + +Logged as one grouped entry in `gaps.tsv` rather than 26 separate rows. +rather than a naming mismatch — flagged, not mapped. Logged in `gaps.tsv`. diff --git a/reports/cl_lexical_cache.json b/reports/cl_lexical_cache.json new file mode 100644 index 0000000..b439a73 --- /dev/null +++ b/reports/cl_lexical_cache.json @@ -0,0 +1,20843 @@ +{ + "schema_version": 1, + "generated_utc": "2026-09-10T19:42:16.109512+00:00", + "source_database_sha256": "2154a6090e1c84c702a86d49c50d3b2610bc2a352175dd04c81e8afd4941b7f6", + "upstream_checked": false, + "terms": [ + { + "cl_id": "CL:0000000", + "label": "cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000001", + "label": "primary cultured cell", + "exact_synonyms": [ + "primary cell culture cell", + "unpassaged cultured cell" + ] + }, + { + "cl_id": "CL:0000005", + "label": "neural crest derived fibroblast", + "exact_synonyms": [ + "fibroblast neural crest derived" + ] + }, + { + "cl_id": "CL:0000006", + "label": "neuronal receptor cell", + "exact_synonyms": [ + "neuronal receptor cell (sensu Animalia)" + ] + }, + { + "cl_id": "CL:0000007", + "label": "early embryonic cell (metazoa)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000008", + "label": "migratory cranial neural crest cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000010", + "label": "cultured cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000011", + "label": "migratory trunk neural crest cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000014", + "label": "germ line stem cell", + "exact_synonyms": [ + "germline stem cell" + ] + }, + { + "cl_id": "CL:0000015", + "label": "male germ cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000016", + "label": "male germ line stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000017", + "label": "spermatocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000018", + "label": "spermatid", + "exact_synonyms": [ + "nematoblast" + ] + }, + { + "cl_id": "CL:0000019", + "label": "sperm", + "exact_synonyms": [ + "sperm cell", + "spermatozoid", + "spermatozoon" + ] + }, + { + "cl_id": "CL:0000020", + "label": "spermatogonium", + "exact_synonyms": [ + "spermatogonial cell" + ] + }, + { + "cl_id": "CL:0000021", + "label": "female germ cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000022", + "label": "female germ line stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000023", + "label": "oocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000024", + "label": "oogonial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000025", + "label": "egg cell", + "exact_synonyms": [ + "mature oocyte", + "ovum" + ] + }, + { + "cl_id": "CL:0000026", + "label": "invertebrate nurse cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000027", + "label": "smooth muscle cell neural crest derived", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000028", + "label": "CNS neuron (sensu Nematoda and Protostomia)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000029", + "label": "neural crest derived neuron", + "exact_synonyms": [ + "neuron neural crest derived" + ] + }, + { + "cl_id": "CL:0000030", + "label": "glioblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000031", + "label": "neuroblast (sensu Vertebrata)", + "exact_synonyms": [ + "neuroblast" + ] + }, + { + "cl_id": "CL:0000032", + "label": "neuroplacodal cell", + "exact_synonyms": [ + "neural placode cell" + ] + }, + { + "cl_id": "CL:0000033", + "label": "apocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000034", + "label": "stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000035", + "label": "single fate stem cell", + "exact_synonyms": [ + "unipotent stem cell", + "unipotential stem cell" + ] + }, + { + "cl_id": "CL:0000036", + "label": "epithelial fate stem cell", + "exact_synonyms": [ + "epithelial stem cell" + ] + }, + { + "cl_id": "CL:0000037", + "label": "hematopoietic stem cell", + "exact_synonyms": [ + "blood forming stem cell", + "hemopoietic stem cell" + ] + }, + { + "cl_id": "CL:0000038", + "label": "erythroid progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000039", + "label": "germ line cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000040", + "label": "monoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000041", + "label": "mature eosinophil", + "exact_synonyms": [ + "mature eosinocyte", + "mature eosinophil leucocyte", + "mature eosinophil leukocyte" + ] + }, + { + "cl_id": "CL:0000042", + "label": "neutrophilic myeloblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000043", + "label": "mature basophil", + "exact_synonyms": [ + "mature basophil leucocyte", + "mature basophil leukocyte" + ] + }, + { + "cl_id": "CL:0000047", + "label": "neural stem cell", + "exact_synonyms": [ + "NSC", + "neuronal stem cell" + ] + }, + { + "cl_id": "CL:0000048", + "label": "multi fate stem cell", + "exact_synonyms": [ + "multi-fate stem cell", + "multifate stem cell", + "multipotent cell", + "multipotent stem cell" + ] + }, + { + "cl_id": "CL:0000049", + "label": "common myeloid progenitor", + "exact_synonyms": [ + "common myeloid precursor" + ] + }, + { + "cl_id": "CL:0000050", + "label": "megakaryocyte-erythroid progenitor cell", + "exact_synonyms": [ + "CFU-EM", + "CFU-MegE", + "MEP", + "Meg/E progenitor", + "colony forming unit erythroid megakaryocyte", + "megakaryocyte/erythrocyte progenitor", + "megakaryocyte/erythroid progenitor cell" + ] + }, + { + "cl_id": "CL:0000051", + "label": "common lymphoid progenitor", + "exact_synonyms": [ + "common lymphocyte precursor", + "common lymphocyte progenitor", + "common lymphoid precursor" + ] + }, + { + "cl_id": "CL:0000052", + "label": "totipotent stem cell", + "exact_synonyms": [ + "totipotential stem cell" + ] + }, + { + "cl_id": "CL:0000056", + "label": "myoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000057", + "label": "fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000058", + "label": "chondroblast", + "exact_synonyms": [ + "chrondoplast" + ] + }, + { + "cl_id": "CL:0000059", + "label": "ameloblast", + "exact_synonyms": [ + "amelocyte", + "enamel secreting cell" + ] + }, + { + "cl_id": "CL:0000060", + "label": "odontoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000061", + "label": "cementoblast", + "exact_synonyms": [ + "cementum secreting cell" + ] + }, + { + "cl_id": "CL:0000062", + "label": "osteoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000064", + "label": "ciliated cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000065", + "label": "ependymal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000066", + "label": "epithelial cell", + "exact_synonyms": [ + "epitheliocyte" + ] + }, + { + "cl_id": "CL:0000067", + "label": "ciliated epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000068", + "label": "duct epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000069", + "label": "branched duct epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000071", + "label": "blood vessel endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000072", + "label": "non-branched duct epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000075", + "label": "columnar/cuboidal epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000076", + "label": "squamous epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000077", + "label": "mesothelial cell", + "exact_synonyms": [ + "mesotheliocyte" + ] + }, + { + "cl_id": "CL:0000078", + "label": "peridermal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000079", + "label": "stratified epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000080", + "label": "circulating cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000081", + "label": "blood cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000082", + "label": "epithelial cell of lung", + "exact_synonyms": [ + "lung epithelial cell" + ] + }, + { + "cl_id": "CL:0000083", + "label": "epithelial cell of pancreas", + "exact_synonyms": [ + "pancreas epithelial cell", + "pancreatic epithelial cell" + ] + }, + { + "cl_id": "CL:0000084", + "label": "T cell", + "exact_synonyms": [ + "T lymphocyte", + "T-cell", + "T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000091", + "label": "Kupffer cell", + "exact_synonyms": [ + "hepatic macrophage", + "littoral cell of hepatic sinusoid", + "liver macrophage", + "macrophagocytus stellatus", + "stellate cell of von Kupffer", + "von Kupffer cell" + ] + }, + { + "cl_id": "CL:0000092", + "label": "osteoclast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000094", + "label": "granulocyte", + "exact_synonyms": [ + "granular leucocyte", + "granular leukocyte", + "polymorphonuclear leukocyte" + ] + }, + { + "cl_id": "CL:0000095", + "label": "neuron associated cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000096", + "label": "mature neutrophil", + "exact_synonyms": [ + "PMN", + "mature neutrocyte", + "mature neutrophil leucocyte", + "mature neutrophil leukocyte", + "mature neutrophilic leucocyte", + "mature neutrophilic leukocyte", + "polymorphonuclear neutrophil", + "polynuclear neutrophilic leucocyte", + "polynuclear neutrophilic leukocyte" + ] + }, + { + "cl_id": "CL:0000097", + "label": "mast cell", + "exact_synonyms": [ + "histaminocyte", + "labrocyte", + "mastocyte" + ] + }, + { + "cl_id": "CL:0000098", + "label": "sensory epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000099", + "label": "interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000100", + "label": "motor neuron", + "exact_synonyms": [ + "motoneuron" + ] + }, + { + "cl_id": "CL:0000101", + "label": "sensory neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000102", + "label": "polymodal neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000103", + "label": "bipolar neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000104", + "label": "multipolar neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000105", + "label": "pseudounipolar neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000106", + "label": "unipolar neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000107", + "label": "autonomic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000108", + "label": "cholinergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000109", + "label": "adrenergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000110", + "label": "peptidergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000112", + "label": "columnar neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000113", + "label": "mononuclear phagocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000114", + "label": "surface ectodermal cell", + "exact_synonyms": [ + "cell of surface ectoderm", + "surface ectoderm cell" + ] + }, + { + "cl_id": "CL:0000115", + "label": "endothelial cell", + "exact_synonyms": [ + "endotheliocyte" + ] + }, + { + "cl_id": "CL:0000116", + "label": "pioneer neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000117", + "label": "CNS neuron (sensu Vertebrata)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000118", + "label": "basket cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000119", + "label": "cerebellar Golgi cell", + "exact_synonyms": [ + "Golgi cell", + "Golgi neuron", + "cerebellar Golgi neuron", + "cerebellum Golgi cell" + ] + }, + { + "cl_id": "CL:0000120", + "label": "granule cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000121", + "label": "Purkinje cell", + "exact_synonyms": [ + "Purkinje neuron", + "cerebellar Purkinje cell" + ] + }, + { + "cl_id": "CL:0000122", + "label": "stellate neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000123", + "label": "neuron associated cell (sensu Vertebrata)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000125", + "label": "glial cell", + "exact_synonyms": [ + "neuroglial cell" + ] + }, + { + "cl_id": "CL:0000126", + "label": "macroglial cell", + "exact_synonyms": [ + "macrogliocyte" + ] + }, + { + "cl_id": "CL:0000127", + "label": "astrocyte", + "exact_synonyms": [ + "astrocytic glia" + ] + }, + { + "cl_id": "CL:0000128", + "label": "oligodendrocyte", + "exact_synonyms": [ + "OLs" + ] + }, + { + "cl_id": "CL:0000129", + "label": "microglial cell", + "exact_synonyms": [ + "brain-resident macrophage", + "hortega cells", + "microgliocyte" + ] + }, + { + "cl_id": "CL:0000130", + "label": "neuron associated cell (sensu Nematoda and Protostomia)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000131", + "label": "gut endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000132", + "label": "corneal endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000133", + "label": "neurectodermal cell", + "exact_synonyms": [ + "neurectoderm cell" + ] + }, + { + "cl_id": "CL:0000134", + "label": "mesenchymal stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000135", + "label": "circulating fibrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000136", + "label": "adipocyte", + "exact_synonyms": [ + "adipose cell", + "fat cell" + ] + }, + { + "cl_id": "CL:0000137", + "label": "osteocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000138", + "label": "chondrocyte", + "exact_synonyms": [ + "cartilage cell" + ] + }, + { + "cl_id": "CL:0000140", + "label": "odontocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000141", + "label": "cementocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000142", + "label": "hyalocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000143", + "label": "guidepost cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000145", + "label": "professional antigen presenting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000146", + "label": "simple columnar epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000147", + "label": "pigment cell", + "exact_synonyms": [ + "chromatocyte", + "chromatophore" + ] + }, + { + "cl_id": "CL:0000148", + "label": "melanocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000149", + "label": "visual pigment cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000150", + "label": "glandular secretory epithelial cell", + "exact_synonyms": [ + "glandular epithelial cell" + ] + }, + { + "cl_id": "CL:0000151", + "label": "secretory cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000152", + "label": "exocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000153", + "label": "glycosaminoglycan secreting cell", + "exact_synonyms": [ + "GAG secreting cell" + ] + }, + { + "cl_id": "CL:0000154", + "label": "protein secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000155", + "label": "peptic cell", + "exact_synonyms": [ + "chief cell of stomach", + "gastric chief cell", + "pepsinogen secreting cell", + "zymogenic cell" + ] + }, + { + "cl_id": "CL:0000157", + "label": "surfactant secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000158", + "label": "club cell", + "exact_synonyms": [ + "Clara cell" + ] + }, + { + "cl_id": "CL:0000159", + "label": "seromucus secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000160", + "label": "goblet cell", + "exact_synonyms": [ + "chalice cell" + ] + }, + { + "cl_id": "CL:0000162", + "label": "parietal cell", + "exact_synonyms": [ + "gastric parietal cell", + "oxyntic cell" + ] + }, + { + "cl_id": "CL:0000163", + "label": "endocrine cell", + "exact_synonyms": [ + "endocrinocyte" + ] + }, + { + "cl_id": "CL:0000164", + "label": "enteroendocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000165", + "label": "neuroendocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000166", + "label": "chromaffin cell", + "exact_synonyms": [ + "phaeochromocyte" + ] + }, + { + "cl_id": "CL:0000167", + "label": "peptide hormone secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000168", + "label": "insulin secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000169", + "label": "type B pancreatic cell", + "exact_synonyms": [ + "B-cell of pancreatic islet", + "beta cell of pancreatic islet", + "insulin-secreting cell", + "pancreatic B cell", + "pancreatic B-cell", + "pancreatic beta cell", + "pancreatic islet core", + "type B enteroendocrine cell" + ] + }, + { + "cl_id": "CL:0000170", + "label": "glucagon secreting cell", + "exact_synonyms": [ + "glucagon-secreting cell" + ] + }, + { + "cl_id": "CL:0000171", + "label": "pancreatic A cell", + "exact_synonyms": [ + "alpha cell of islet of Langerhans", + "pancreatic alpha cell" + ] + }, + { + "cl_id": "CL:0000172", + "label": "somatostatin secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000173", + "label": "pancreatic D cell", + "exact_synonyms": [ + "D-cell of pancreatic islet", + "delta cell of islet", + "delta cell of pancreatic islet", + "pancreatic D-cell", + "pancreatic delta cell", + "somatostatin-secreting pancreatic cell" + ] + }, + { + "cl_id": "CL:0000174", + "label": "steroid hormone secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000175", + "label": "luteal cell", + "exact_synonyms": [ + "corpus luteum cell", + "lutein cell" + ] + }, + { + "cl_id": "CL:0000176", + "label": "ecdysteroid secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000177", + "label": "testosterone secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000178", + "label": "Leydig cell", + "exact_synonyms": [ + "interstitial cell of Leydig" + ] + }, + { + "cl_id": "CL:0000179", + "label": "progesterone secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000180", + "label": "estradiol secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000182", + "label": "hepatocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000183", + "label": "contractile cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000185", + "label": "myoepithelial cell", + "exact_synonyms": [ + "basket epithelial cell", + "myoepitheliocyte" + ] + }, + { + "cl_id": "CL:0000186", + "label": "myofibroblast cell", + "exact_synonyms": [ + "MFB" + ] + }, + { + "cl_id": "CL:0000187", + "label": "muscle cell", + "exact_synonyms": [ + "muscle fiber", + "myocyte" + ] + }, + { + "cl_id": "CL:0000188", + "label": "cell of skeletal muscle", + "exact_synonyms": [ + "skeletal muscle cell" + ] + }, + { + "cl_id": "CL:0000189", + "label": "slow muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000190", + "label": "fast muscle cell", + "exact_synonyms": [ + "glycolytic muscle fiber" + ] + }, + { + "cl_id": "CL:0000192", + "label": "smooth muscle cell", + "exact_synonyms": [ + "SMCs", + "myocytes, smooth muscle", + "smooth muscle fiber" + ] + }, + { + "cl_id": "CL:0000193", + "label": "cardiac muscle cell (sensu Arthopoda)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000196", + "label": "insect flight muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000197", + "label": "sensory receptor cell", + "exact_synonyms": [ + "receptor cell" + ] + }, + { + "cl_id": "CL:0000198", + "label": "pain receptor cell", + "exact_synonyms": [ + "nociceptor", + "nocireceptor" + ] + }, + { + "cl_id": "CL:0000199", + "label": "mechanoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000200", + "label": "touch receptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000202", + "label": "auditory hair cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000203", + "label": "gravity sensitive cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000204", + "label": "acceleration receptive cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000205", + "label": "thermoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000206", + "label": "chemoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000207", + "label": "olfactory receptor cell", + "exact_synonyms": [ + "Schultze's cell", + "odorant receptor cell", + "olfactory receptor neuron", + "olfactory sensory neuron" + ] + }, + { + "cl_id": "CL:0000208", + "label": "pH receptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000209", + "label": "taste receptor cell", + "exact_synonyms": [ + "taste bud cell" + ] + }, + { + "cl_id": "CL:0000210", + "label": "photoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000211", + "label": "electrically active cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000214", + "label": "synovial cell", + "exact_synonyms": [ + "synoviocyte" + ] + }, + { + "cl_id": "CL:0000216", + "label": "Sertoli cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000218", + "label": "myelinating Schwann cell", + "exact_synonyms": [ + "neurilemmal cell" + ] + }, + { + "cl_id": "CL:0000219", + "label": "motile cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000221", + "label": "ectodermal cell", + "exact_synonyms": [ + "ectoderm cell" + ] + }, + { + "cl_id": "CL:0000222", + "label": "mesodermal cell", + "exact_synonyms": [ + "mesoblast", + "mesoderm cell" + ] + }, + { + "cl_id": "CL:0000223", + "label": "endodermal cell", + "exact_synonyms": [ + "endoderm cell" + ] + }, + { + "cl_id": "CL:0000225", + "label": "anucleate cell", + "exact_synonyms": [ + "non-nucleated cell" + ] + }, + { + "cl_id": "CL:0000226", + "label": "single nucleate cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000227", + "label": "binucleate cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000228", + "label": "multinucleate cell", + "exact_synonyms": [ + "multinucleated cells", + "polynuclear cells" + ] + }, + { + "cl_id": "CL:0000232", + "label": "erythrocyte", + "exact_synonyms": [ + "RBC", + "red blood cell" + ] + }, + { + "cl_id": "CL:0000233", + "label": "platelet", + "exact_synonyms": [ + "anucleate thrombocyte", + "blood platelet", + "enucleate thrombocyte" + ] + }, + { + "cl_id": "CL:0000234", + "label": "phagocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000235", + "label": "macrophage", + "exact_synonyms": [ + "histiocyte" + ] + }, + { + "cl_id": "CL:0000236", + "label": "B cell", + "exact_synonyms": [ + "B lymphocyte", + "B-cell", + "B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000237", + "label": "keratinizing barrier epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000238", + "label": "non keratinizing barrier epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000239", + "label": "brush border epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000240", + "label": "stratified squamous epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000241", + "label": "stratified cuboidal epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000242", + "label": "Merkel cell", + "exact_synonyms": [ + "Merkel's cell" + ] + }, + { + "cl_id": "CL:0000244", + "label": "transitional epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000246", + "label": "Mauthner neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000247", + "label": "Rohon-Beard neuron", + "exact_synonyms": [ + "Rohon Beard cell", + "Rohon-Beard cell" + ] + }, + { + "cl_id": "CL:0000249", + "label": "hatching gland cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000251", + "label": "extramedullary cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000253", + "label": "eurydendroid cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000255", + "label": "eukaryotic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000256", + "label": "uric acid accumulating cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000257", + "label": "Eumycetozoan cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000286", + "label": "hyphal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000287", + "label": "eye photoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000295", + "label": "somatotropin secreting cell", + "exact_synonyms": [ + "growth hormone secreting cell", + "somatotrophin secreting cell" + ] + }, + { + "cl_id": "CL:0000300", + "label": "gamete", + "exact_synonyms": [ + "haploid nucleated cell" + ] + }, + { + "cl_id": "CL:0000301", + "label": "pole cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000306", + "label": "crystallin accumulating cell", + "exact_synonyms": [ + "lens cell" + ] + }, + { + "cl_id": "CL:0000307", + "label": "tracheal epithelial cell", + "exact_synonyms": [ + "tracheocyte" + ] + }, + { + "cl_id": "CL:0000308", + "label": "metal ion accumulating cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000309", + "label": "copper accumulating cell", + "exact_synonyms": [ + "cuprophilic cell" + ] + }, + { + "cl_id": "CL:0000310", + "label": "iron accumulating cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000311", + "label": "keratin accumulating cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000312", + "label": "keratinocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000313", + "label": "serous secreting cell", + "exact_synonyms": [ + "serous cell" + ] + }, + { + "cl_id": "CL:0000314", + "label": "milk secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000315", + "label": "tear secreting cell", + "exact_synonyms": [ + "tears secreting cell" + ] + }, + { + "cl_id": "CL:0000317", + "label": "sebocyte", + "exact_synonyms": [ + "sebum secreting cell" + ] + }, + { + "cl_id": "CL:0000318", + "label": "sweat secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000319", + "label": "mucus secreting cell", + "exact_synonyms": [ + "mucous cell" + ] + }, + { + "cl_id": "CL:0000322", + "label": "pulmonary alveolar epithelial cell", + "exact_synonyms": [ + "alveolar epithelial cell", + "alveolus of lung epithelial cell", + "epithelial cell of alveolus of lung", + "pneumocyte", + "pneumonocyte" + ] + }, + { + "cl_id": "CL:0000323", + "label": "lysozyme secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000324", + "label": "metanephric mesenchyme stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000325", + "label": "stuff accumulating cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000326", + "label": "glycogen accumulating cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000327", + "label": "extracellular matrix secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000329", + "label": "oxygen accumulating cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000333", + "label": "migratory neural crest cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000334", + "label": "vegetative cell (sensu Fungi)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000335", + "label": "mesenchyme condensation cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000336", + "label": "adrenal medulla chromaffin cell", + "exact_synonyms": [ + "medullary chromaffin cell of adrenal gland" + ] + }, + { + "cl_id": "CL:0000338", + "label": "neuroblast (sensu Nematoda and Protostomia)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000339", + "label": "glioblast (sensu Vertebrata)", + "exact_synonyms": [ + "spongioblast" + ] + }, + { + "cl_id": "CL:0000340", + "label": "glioblast (sensu Nematoda and Protostomia)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000341", + "label": "pigment cell (sensu Nematoda and Protostomia)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000342", + "label": "pigment cell (sensu Vertebrata)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000343", + "label": "visual pigment cell (sensu Vertebrata)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000345", + "label": "dental papilla cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000346", + "label": "hair follicle dermal papilla cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000347", + "label": "scleral cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000348", + "label": "choroidal cell of the eye", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000349", + "label": "extraembryonic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000350", + "label": "amnioserosal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000351", + "label": "trophoblast cell", + "exact_synonyms": [ + "trophoblastic cell" + ] + }, + { + "cl_id": "CL:0000352", + "label": "epiblast cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000353", + "label": "blastoderm cell", + "exact_synonyms": [ + "blastomere" + ] + }, + { + "cl_id": "CL:0000354", + "label": "blastemal cell", + "exact_synonyms": [ + "blastema cell" + ] + }, + { + "cl_id": "CL:0000355", + "label": "multi-potent skeletal muscle stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000356", + "label": "hair matrix stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000357", + "label": "stratified epithelial stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000358", + "label": "sphincter associated smooth muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000359", + "label": "vascular associated smooth muscle cell", + "exact_synonyms": [ + "VSMC", + "vascular smooth muscle cell" + ] + }, + { + "cl_id": "CL:0000360", + "label": "morula cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000361", + "label": "gastrula cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000362", + "label": "epidermal cell", + "exact_synonyms": [ + "cell of epidermis" + ] + }, + { + "cl_id": "CL:0000365", + "label": "animal zygote", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000367", + "label": "sheath cell (sensu Nematoda)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000371", + "label": "protoplast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000372", + "label": "tormogen cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000373", + "label": "histoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000374", + "label": "trichogen cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000376", + "label": "humidity receptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000377", + "label": "tracheoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000378", + "label": "supporting cell (sensu Nematoda and Protostomia)", + "exact_synonyms": [ + "support cell (sensu Nematoda and Protostomia)" + ] + }, + { + "cl_id": "CL:0000379", + "label": "sensory processing neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000380", + "label": "thecogen cell", + "exact_synonyms": [ + "fly sheath cell" + ] + }, + { + "cl_id": "CL:0000382", + "label": "scolopale cell", + "exact_synonyms": [ + "scolopidial sheath cell" + ] + }, + { + "cl_id": "CL:0000383", + "label": "nephrogenic mesenchyme stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000384", + "label": "ligament cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000385", + "label": "prohemocyte (sensu Nematoda and Protostomia)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000387", + "label": "hemocyte (sensu Arthropoda)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000388", + "label": "tendon cell", + "exact_synonyms": [ + "muscle attachment cell" + ] + }, + { + "cl_id": "CL:0000389", + "label": "socket cell (sensu Nematoda)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000390", + "label": "blood cell (sensu Nematoda and Protostomia)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000392", + "label": "crystal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000393", + "label": "electrically responsive cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000394", + "label": "plasmatocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000395", + "label": "procrystal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000396", + "label": "lamellocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000397", + "label": "ganglion interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000404", + "label": "electrically signaling cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000406", + "label": "CNS short range interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000407", + "label": "scolopidial ligament cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000408", + "label": "male gamete", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000410", + "label": "CNS long range interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000411", + "label": "Caenorhabditis hypodermal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000412", + "label": "polyploid cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000413", + "label": "haploid cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000415", + "label": "diploid cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000416", + "label": "polytene cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000417", + "label": "endopolyploid cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000418", + "label": "arcade cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000419", + "label": "seam cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000420", + "label": "syncytial epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000421", + "label": "coelomocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000422", + "label": "mitogenic signaling cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000423", + "label": "tip cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000424", + "label": "excretory cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000425", + "label": "pore cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000427", + "label": "GLR cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000428", + "label": "yolk cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000429", + "label": "imaginal disc cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000430", + "label": "xanthophore cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000431", + "label": "iridophore", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000432", + "label": "reticular cell", + "exact_synonyms": [ + "reticulum cell" + ] + }, + { + "cl_id": "CL:0000434", + "label": "eccrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000435", + "label": "alkali secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000436", + "label": "vaginal lubricant secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000437", + "label": "gonadtroph", + "exact_synonyms": [ + "delta basophil", + "follicle stimulating hormone secreting cell", + "gonadotrope", + "gonadotrope cell", + "gonadotroph", + "gonadotropic cell", + "pituitary delta cell" + ] + }, + { + "cl_id": "CL:0000438", + "label": "luteinizing hormone secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000439", + "label": "prolactin secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000440", + "label": "melanocyte stimulating hormone secreting cell", + "exact_synonyms": [ + "melanotrope", + "melanotroph" + ] + }, + { + "cl_id": "CL:0000441", + "label": "follicle stem cell (sensu Arthropoda)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000442", + "label": "follicular dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000443", + "label": "calcitonin secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000444", + "label": "obliquely striated muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000445", + "label": "apoptosis fated cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000446", + "label": "chief cell of parathyroid gland", + "exact_synonyms": [ + "parathyroid chief cell", + "parathyroid gland chief cell", + "parathyroid hormone secreting cell", + "principal cell of parathyroid gland" + ] + }, + { + "cl_id": "CL:0000447", + "label": "carbohydrate secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000448", + "label": "white adipocyte", + "exact_synonyms": [ + "white adipose cell" + ] + }, + { + "cl_id": "CL:0000449", + "label": "brown adipocyte", + "exact_synonyms": [ + "brown adipose cell", + "brown fat cell" + ] + }, + { + "cl_id": "CL:0000451", + "label": "dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000453", + "label": "Langerhans cell", + "exact_synonyms": [ + "LC" + ] + }, + { + "cl_id": "CL:0000454", + "label": "epinephrine secreting cell", + "exact_synonyms": [ + "adrenaline secreting cell", + "epinephrin secreting cell" + ] + }, + { + "cl_id": "CL:0000456", + "label": "mineralocorticoid secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000457", + "label": "biogenic amine secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000458", + "label": "serotonin secreting cell", + "exact_synonyms": [ + "5-HT secreting cell", + "5-Hydroxytryptamine secreting cell" + ] + }, + { + "cl_id": "CL:0000459", + "label": "noradrenergic cell", + "exact_synonyms": [ + "noradrenaline secreting cell", + "norepinephrin secreting cell", + "norepinephrine secreting cell" + ] + }, + { + "cl_id": "CL:0000460", + "label": "glucocorticoid secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000462", + "label": "adepithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000463", + "label": "epidermal cell (sensu Arthropoda)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000464", + "label": "epidermoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000465", + "label": "cardioblast (sensu Arthropoda)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000467", + "label": "adrenocorticotropic hormone secreting cell", + "exact_synonyms": [ + "ACTH secreting cell", + "adrenocorticotrophic hormone secreting cell", + "corticotrophin hormone secreting cell", + "corticotropin hormone secreting cell", + "corticotropin secreting cell" + ] + }, + { + "cl_id": "CL:0000468", + "label": "neuroglioblast (sensu Nematoda and Protostomia)", + "exact_synonyms": [ + "neuro-glioblast", + "neuroglioblast" + ] + }, + { + "cl_id": "CL:0000469", + "label": "ganglion mother cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000470", + "label": "digestive enzyme secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000474", + "label": "pericardial nephrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000476", + "label": "thyrotroph", + "exact_synonyms": [ + "beta-basophil", + "thyroid stimulating hormone secreting cell", + "thyrotrope" + ] + }, + { + "cl_id": "CL:0000477", + "label": "follicle cell of egg chamber", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000478", + "label": "oxytocin stimulating hormone secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000479", + "label": "vasopressin stimulating hormone secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000480", + "label": "secretin stimulating hormone secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000481", + "label": "cholecystokin stimulating hormone secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000482", + "label": "juvenile hormone secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000483", + "label": "bombesin stimulating hormone secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000484", + "label": "connective tissue type mast cell", + "exact_synonyms": [ + "MC(TC)", + "MCTC", + "TC mast cells" + ] + }, + { + "cl_id": "CL:0000485", + "label": "mucosal type mast cell", + "exact_synonyms": [ + "MC(T)", + "MCT", + "T mast cells" + ] + }, + { + "cl_id": "CL:0000486", + "label": "garland cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000487", + "label": "oenocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000488", + "label": "visible light photoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000489", + "label": "scotopic photoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000490", + "label": "photopic photoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000492", + "label": "CD4-positive helper T cell", + "exact_synonyms": [ + "CD4-positive T-helper cell", + "CD4-positive helper T lymphocyte", + "CD4-positive helper T-cell", + "CD4-positive helper T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000494", + "label": "UV sensitive photoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000495", + "label": "blue sensitive photoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000496", + "label": "green sensitive photoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000497", + "label": "red sensitive photoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000498", + "label": "inhibitory interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000499", + "label": "stromal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000500", + "label": "follicular epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000501", + "label": "granulosa cell", + "exact_synonyms": [ + "granulosa cell of ovary" + ] + }, + { + "cl_id": "CL:0000502", + "label": "type D enteroendocrine cell", + "exact_synonyms": [ + "D cell" + ] + }, + { + "cl_id": "CL:0000503", + "label": "theca cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000504", + "label": "enterochromaffin-like cell", + "exact_synonyms": [ + "ECL" + ] + }, + { + "cl_id": "CL:0000505", + "label": "substance P secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000506", + "label": "enkephalin secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000507", + "label": "endorphin secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000508", + "label": "type G enteroendocrine cell", + "exact_synonyms": [ + "G cell" + ] + }, + { + "cl_id": "CL:0000509", + "label": "gastrin secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000510", + "label": "paneth cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000511", + "label": "androgen binding protein secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000513", + "label": "cardiac muscle myoblast", + "exact_synonyms": [ + "cardiac muscle progenitor cell", + "cardiomyocyte progenitor cell" + ] + }, + { + "cl_id": "CL:0000514", + "label": "smooth muscle myoblast", + "exact_synonyms": [ + "myoblast, smooth muscle" + ] + }, + { + "cl_id": "CL:0000515", + "label": "skeletal muscle myoblast", + "exact_synonyms": [ + "skeletal myoblast" + ] + }, + { + "cl_id": "CL:0000516", + "label": "perineuronal satellite cell", + "exact_synonyms": [ + "perineural satellite cell", + "perineuronal satellite oligodendroglial cell", + "satellite oligodendrocyte" + ] + }, + { + "cl_id": "CL:0000517", + "label": "macrophage derived foam cell", + "exact_synonyms": [ + "lipophage" + ] + }, + { + "cl_id": "CL:0000518", + "label": "phagocyte (sensu Vertebrata)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000519", + "label": "phagocyte (sensu Nematoda and Protostomia)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000520", + "label": "prokaryotic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000521", + "label": "fungal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000523", + "label": "mononuclear cytotrophoblast cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000524", + "label": "spheroplast", + "exact_synonyms": [ + "sphaeroplast" + ] + }, + { + "cl_id": "CL:0000525", + "label": "syncytiotrophoblast cell", + "exact_synonyms": [ + "syncytial trophoblast cell", + "syncytiotrophoblastic cell" + ] + }, + { + "cl_id": "CL:0000526", + "label": "afferent neuron", + "exact_synonyms": [ + "input neuron" + ] + }, + { + "cl_id": "CL:0000527", + "label": "efferent neuron", + "exact_synonyms": [ + "output neuron" + ] + }, + { + "cl_id": "CL:0000528", + "label": "nitrergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000529", + "label": "pigmented epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000530", + "label": "primary neuron (sensu Teleostei)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000531", + "label": "primary sensory neuron (sensu Teleostei)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000532", + "label": "CAP motoneuron", + "exact_synonyms": [ + "CaP motorneuron" + ] + }, + { + "cl_id": "CL:0000533", + "label": "primary motor neuron (sensu Teleostei)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000534", + "label": "primary interneuron (sensu Teleostei)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000535", + "label": "secondary neuron (sensu Teleostei)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000536", + "label": "secondary motor neuron (sensu Teleostei)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000540", + "label": "neuron", + "exact_synonyms": [ + "nerve cell" + ] + }, + { + "cl_id": "CL:0000541", + "label": "melanoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000542", + "label": "lymphocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000544", + "label": "slowly adapting mechanoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000545", + "label": "T-helper 1 cell", + "exact_synonyms": [ + "T helper cells type 1", + "T(H)-1 cell", + "Th1 CD4+ T cell", + "Th1 T cell", + "Th1 T lymphocyte", + "Th1 T-cell", + "Th1 T-lymphocyte", + "Th1 cell", + "helper T cell type 1" + ] + }, + { + "cl_id": "CL:0000546", + "label": "T-helper 2 cell", + "exact_synonyms": [ + "T helper cells type 2", + "T(H)-2 cell", + "Th2 T cell", + "Th2 T lymphocyte", + "Th2 T-cell", + "Th2 T-lymphocyte", + "Th2 cell", + "helper T cell type 2" + ] + }, + { + "cl_id": "CL:0000547", + "label": "proerythroblast", + "exact_synonyms": [ + "rubriblast" + ] + }, + { + "cl_id": "CL:0000549", + "label": "basophilic erythroblast", + "exact_synonyms": [ + "basophilic normoblast", + "early erythroblast", + "early normoblast", + "prorubricyte" + ] + }, + { + "cl_id": "CL:0000550", + "label": "polychromatophilic erythroblast", + "exact_synonyms": [ + "intermediate erythroblast", + "intermediate normoblast", + "polychromatic erythroblast", + "polychromatic normoblast", + "polychromatophilic normoblast", + "rubricyte" + ] + }, + { + "cl_id": "CL:0000551", + "label": "unimodal nocireceptor", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000552", + "label": "orthochromatic erythroblast", + "exact_synonyms": [ + "acidophilic erythroblast", + "eosinophilic erythroblast", + "late erythoblast", + "orthochromatic normoblast", + "pyknotic eto enrythroblast" + ] + }, + { + "cl_id": "CL:0000553", + "label": "megakaryocyte progenitor cell", + "exact_synonyms": [ + "CFU-Meg", + "Meg-CFC", + "MkP", + "colony-forming unit-megakaryocyte", + "megacaryoblast", + "megacaryocyte progenitor cell", + "megakaryoblast", + "megakaryocytic progenitor cell" + ] + }, + { + "cl_id": "CL:0000554", + "label": "gastrin stimulating hormone secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000556", + "label": "megakaryocyte", + "exact_synonyms": [ + "megacaryocyte", + "megalocaryocyte", + "megalokaryocyte" + ] + }, + { + "cl_id": "CL:0000557", + "label": "granulocyte monocyte progenitor cell", + "exact_synonyms": [ + "colony forming unit granulocyte macrophage", + "granulocyte-macrophage progenitor", + "granulocyte/monocyte precursor", + "granulocyte/monocyte progenitor" + ] + }, + { + "cl_id": "CL:0000558", + "label": "reticulocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000559", + "label": "promonocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000560", + "label": "band form neutrophil", + "exact_synonyms": [ + "rod neutrophil" + ] + }, + { + "cl_id": "CL:0000561", + "label": "amacrine cell", + "exact_synonyms": [ + "amacrine neuron" + ] + }, + { + "cl_id": "CL:0000562", + "label": "nucleate erythrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000563", + "label": "endospore", + "exact_synonyms": [ + "bacterial spore" + ] + }, + { + "cl_id": "CL:0000564", + "label": "neutrophilic promyelocyte", + "exact_synonyms": [ + "neutrophilic premyelocyte", + "neutrophilic progranulocyte" + ] + }, + { + "cl_id": "CL:0000565", + "label": "fat body cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000566", + "label": "angioblastic mesenchymal cell", + "exact_synonyms": [ + "angioblast", + "chondroplast" + ] + }, + { + "cl_id": "CL:0000567", + "label": "polymodal nocireceptor", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000568", + "label": "amine precursor uptake and decarboxylation cell", + "exact_synonyms": [ + "APUD cell" + ] + }, + { + "cl_id": "CL:0000569", + "label": "cardiac mesenchymal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000570", + "label": "parafollicular cell", + "exact_synonyms": [ + "C cell", + "C cell of thyroid gland", + "clear cell of thyroid gland", + "parafollicular cell of thyroid gland", + "thyroid parafollicular cell" + ] + }, + { + "cl_id": "CL:0000571", + "label": "leucophore", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000573", + "label": "retinal cone cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000574", + "label": "erythrophore", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000575", + "label": "corneal epithelial cell", + "exact_synonyms": [ + "epithelial cell of cornea" + ] + }, + { + "cl_id": "CL:0000576", + "label": "monocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000577", + "label": "type EC enteroendocrine cell", + "exact_synonyms": [ + "Kulchitsky cell", + "argentaffin cell", + "enterochromaffin cell" + ] + }, + { + "cl_id": "CL:0000578", + "label": "experimentally modified cell in vitro", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000579", + "label": "border follicle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000580", + "label": "neutrophilic myelocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000581", + "label": "peritoneal macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000582", + "label": "neutrophilic metamyelocyte", + "exact_synonyms": [ + "juvenile neutrophil" + ] + }, + { + "cl_id": "CL:0000583", + "label": "alveolar macrophage", + "exact_synonyms": [ + "dust cell" + ] + }, + { + "cl_id": "CL:0000584", + "label": "enterocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000586", + "label": "germ cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000587", + "label": "cold sensing thermoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000588", + "label": "odontoclast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000589", + "label": "cochlear inner hair cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000590", + "label": "small luteal cell", + "exact_synonyms": [ + "small lutein cell", + "theca lutein cell" + ] + }, + { + "cl_id": "CL:0000591", + "label": "warmth sensing thermoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000592", + "label": "large luteal cell", + "exact_synonyms": [ + "granulosa lutein cell" + ] + }, + { + "cl_id": "CL:0000593", + "label": "androgen secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000594", + "label": "skeletal muscle satellite cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000595", + "label": "enucleate erythrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000596", + "label": "sexual spore", + "exact_synonyms": [ + "meiotically-derived spore" + ] + }, + { + "cl_id": "CL:0000597", + "label": "microconidium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000598", + "label": "pyramidal neuron", + "exact_synonyms": [ + "projection neuron", + "pyramidal cell" + ] + }, + { + "cl_id": "CL:0000599", + "label": "conidium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000600", + "label": "heterokaryon", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000601", + "label": "cochlear outer hair cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000602", + "label": "pressoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000603", + "label": "dikaryon", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000604", + "label": "retinal rod cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000605", + "label": "fungal asexual spore", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000606", + "label": "macroconidium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000607", + "label": "ascospore", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000608", + "label": "zygospore", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000609", + "label": "vestibular hair cell", + "exact_synonyms": [ + "vestibular receptor cell" + ] + }, + { + "cl_id": "CL:0000611", + "label": "eosinophil progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000612", + "label": "eosinophilic myelocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000613", + "label": "basophil progenitor cell", + "exact_synonyms": [ + "BaP" + ] + }, + { + "cl_id": "CL:0000614", + "label": "basophilic myelocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000615", + "label": "basidiospore", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000617", + "label": "GABAergic neuron", + "exact_synonyms": [ + "GABA-ergic neuron" + ] + }, + { + "cl_id": "CL:0000618", + "label": "sheath cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000619", + "label": "supporting cell (sensu Nematoda)", + "exact_synonyms": [ + "support cell (sensu Nematoda)" + ] + }, + { + "cl_id": "CL:0000621", + "label": "fusion competent myoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000622", + "label": "acinar cell", + "exact_synonyms": [ + "acinic cell", + "acinous cell" + ] + }, + { + "cl_id": "CL:0000623", + "label": "natural killer cell", + "exact_synonyms": [ + "NK cell" + ] + }, + { + "cl_id": "CL:0000624", + "label": "CD4-positive, alpha-beta T cell", + "exact_synonyms": [ + "CD4-positive, alpha-beta T lymphocyte", + "CD4-positive, alpha-beta T-cell", + "CD4-positive, alpha-beta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000625", + "label": "CD8-positive, alpha-beta T cell", + "exact_synonyms": [ + "CD8-positive, alpha-beta T lymphocyte", + "CD8-positive, alpha-beta T-cell", + "CD8-positive, alpha-beta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000626", + "label": "olfactory granule cell", + "exact_synonyms": [ + "olfactory bulb granule cell" + ] + }, + { + "cl_id": "CL:0000628", + "label": "photosynthetic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000629", + "label": "storage cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000630", + "label": "supporting cell", + "exact_synonyms": [ + "supportive cell" + ] + }, + { + "cl_id": "CL:0000631", + "label": "labyrinth supporting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000632", + "label": "hepatic stellate cell", + "exact_synonyms": [ + "Ito cell", + "hepatic perisinusoidal cell", + "perisinusoidal cell" + ] + }, + { + "cl_id": "CL:0000633", + "label": "Hensen cell", + "exact_synonyms": [ + "Hensen's cell", + "cell of Hensen", + "external limiting cell of organ of Corti" + ] + }, + { + "cl_id": "CL:0000634", + "label": "Claudius cell", + "exact_synonyms": [ + "cell of Claudius" + ] + }, + { + "cl_id": "CL:0000635", + "label": "Deiter's cell", + "exact_synonyms": [ + "Deiters cell", + "outer phalangeal cell" + ] + }, + { + "cl_id": "CL:0000636", + "label": "Mueller cell", + "exact_synonyms": [ + "Muller cell", + "Muller glia", + "M\u00fcller cell" + ] + }, + { + "cl_id": "CL:0000637", + "label": "chromophil cell of anterior pituitary gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000638", + "label": "acidophil cell of pars distalis of adenohypophysis", + "exact_synonyms": [ + "acidophil cell of pars anterior of adenohypophysis", + "acidophil of pars anterior of adenohypophysis", + "acidophil of pars distalis of adenohypophysis", + "pituitary alpha cell" + ] + }, + { + "cl_id": "CL:0000639", + "label": "basophil cell of pars distalis of adenohypophysis", + "exact_synonyms": [ + "basophil cell of anterior lobe of hypophysis" + ] + }, + { + "cl_id": "CL:0000641", + "label": "chromophobe cell", + "exact_synonyms": [ + "chromophobic cell" + ] + }, + { + "cl_id": "CL:0000642", + "label": "folliculostellate cell", + "exact_synonyms": [ + "folliculo-stellate cell", + "pituitary folliculostellate cell" + ] + }, + { + "cl_id": "CL:0000644", + "label": "Bergmann glial cell", + "exact_synonyms": [ + "Bergmann astrocyte", + "Bergmann glial cell of cerebellum" + ] + }, + { + "cl_id": "CL:0000645", + "label": "pituicyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000646", + "label": "basal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000647", + "label": "multinucleated giant cell", + "exact_synonyms": [ + "Langerhans giant cell", + "foreign body giant cell", + "macrophage polykaryon", + "multinucleate giant cell", + "syncytial giant cell" + ] + }, + { + "cl_id": "CL:0000648", + "label": "kidney granular cell", + "exact_synonyms": [ + "JG cell", + "renin secreting cell" + ] + }, + { + "cl_id": "CL:0000649", + "label": "spinous cell of epidermis", + "exact_synonyms": [ + "prickle cell of epidermis", + "spinous keratinocytes of epidermis" + ] + }, + { + "cl_id": "CL:0000650", + "label": "mesangial cell", + "exact_synonyms": [ + "kidney mesangial cell" + ] + }, + { + "cl_id": "CL:0000652", + "label": "pinealocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000653", + "label": "podocyte", + "exact_synonyms": [ + "glomerular podocyte", + "glomerular visceral epithelial cell", + "kidney podocyte", + "renal podocyte" + ] + }, + { + "cl_id": "CL:0000654", + "label": "primary oocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000655", + "label": "secondary oocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000656", + "label": "primary spermatocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000657", + "label": "secondary spermatocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000658", + "label": "cuticle secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000659", + "label": "eggshell secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000660", + "label": "glycocalyx secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000661", + "label": "distal tip cell (sensu Nematoda)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000662", + "label": "neuroglioblast (sensu Nematoda)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000666", + "label": "fenestrated endothelial cell", + "exact_synonyms": [ + "window cell" + ] + }, + { + "cl_id": "CL:0000667", + "label": "collagen secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000669", + "label": "pericyte", + "exact_synonyms": [ + "ARC", + "adventitial reticular cell", + "cell of Rouget", + "pericyte cell", + "pericyte of Rouget" + ] + }, + { + "cl_id": "CL:0000670", + "label": "primordial germ cell", + "exact_synonyms": [ + "gonocyte", + "primitive germ cell" + ] + }, + { + "cl_id": "CL:0000671", + "label": "centripetally migrating follicle cell", + "exact_synonyms": [ + "centripetal follicle cell" + ] + }, + { + "cl_id": "CL:0000673", + "label": "Kenyon cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000674", + "label": "interfollicle cell", + "exact_synonyms": [ + "stalk cell", + "stalk follicle cell" + ] + }, + { + "cl_id": "CL:0000675", + "label": "female gamete", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000676", + "label": "cap cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000677", + "label": "gut absorptive cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000678", + "label": "commissural neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000679", + "label": "glutamatergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000680", + "label": "muscle precursor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000681", + "label": "radial glial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000682", + "label": "M cell of gut", + "exact_synonyms": [ + "M-cell", + "microfold cell" + ] + }, + { + "cl_id": "CL:0000683", + "label": "ependymoglial cell", + "exact_synonyms": [ + "ependymal astrocyte" + ] + }, + { + "cl_id": "CL:0000684", + "label": "littoral cell of liver", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000686", + "label": "cerebrospinal fluid secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000687", + "label": "R1 photoreceptor cell", + "exact_synonyms": [ + "R1 cell" + ] + }, + { + "cl_id": "CL:0000688", + "label": "perijunctional fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000689", + "label": "myoendocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000690", + "label": "R2 photoreceptor cell", + "exact_synonyms": [ + "R2 cell" + ] + }, + { + "cl_id": "CL:0000691", + "label": "stellate interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000692", + "label": "terminal Schwann cell", + "exact_synonyms": [ + "perisynaptic Schwann cell", + "teloglia" + ] + }, + { + "cl_id": "CL:0000693", + "label": "neurogliaform cell", + "exact_synonyms": [ + "NGF cell", + "neuroglioform cell", + "spiderweb cell" + ] + }, + { + "cl_id": "CL:0000694", + "label": "R3 photoreceptor cell", + "exact_synonyms": [ + "R3 cell" + ] + }, + { + "cl_id": "CL:0000695", + "label": "Cajal-Retzius cell", + "exact_synonyms": [ + "CR cells", + "Horizontal cells of Cajal" + ] + }, + { + "cl_id": "CL:0000696", + "label": "PP cell", + "exact_synonyms": [ + "type F enteroendocrine cell" + ] + }, + { + "cl_id": "CL:0000697", + "label": "R4 photoreceptor cell", + "exact_synonyms": [ + "R4 cell" + ] + }, + { + "cl_id": "CL:0000699", + "label": "paraganglial type 1 cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000700", + "label": "dopaminergic neuron", + "exact_synonyms": [ + "dopaminergic cell" + ] + }, + { + "cl_id": "CL:0000701", + "label": "paraganglia type 2 cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000702", + "label": "R5 photoreceptor cell", + "exact_synonyms": [ + "R5 cell" + ] + }, + { + "cl_id": "CL:0000703", + "label": "sustentacular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000704", + "label": "endothelial tip cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000705", + "label": "R6 photoreceptor cell", + "exact_synonyms": [ + "R6 cell" + ] + }, + { + "cl_id": "CL:0000706", + "label": "choroid plexus epithelial cell", + "exact_synonyms": [ + "epithelial cell of choroid plexus" + ] + }, + { + "cl_id": "CL:0000707", + "label": "R7 photoreceptor cell", + "exact_synonyms": [ + "R7 cell" + ] + }, + { + "cl_id": "CL:0000708", + "label": "leptomeningeal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000709", + "label": "R8 photoreceptor cell", + "exact_synonyms": [ + "R8 cell" + ] + }, + { + "cl_id": "CL:0000710", + "label": "neurecto-epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000711", + "label": "cumulus granulosa cell", + "exact_synonyms": [ + "cumulus cell" + ] + }, + { + "cl_id": "CL:0000712", + "label": "stratum granulosum cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000713", + "label": "corona radiata cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000715", + "label": "embryonic crystal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000716", + "label": "lymph gland crystal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000718", + "label": "compound eye cone cell", + "exact_synonyms": [ + "Semper cell" + ] + }, + { + "cl_id": "CL:0000719", + "label": "posterior cone cell (sensu Endopterygota)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000720", + "label": "anterior cone cell (sensu Endopterygota)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000721", + "label": "equatorial cone cell (sensu Endopterygota)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000722", + "label": "cystoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000723", + "label": "somatic stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000724", + "label": "heterocyst", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000725", + "label": "nitrogen fixing cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000726", + "label": "chlamydospore", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000730", + "label": "leading edge cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000731", + "label": "urothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000732", + "label": "amoeboid cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000733", + "label": "lymph gland plasmatocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000735", + "label": "lymph gland hemocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000737", + "label": "striated muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000738", + "label": "leukocyte", + "exact_synonyms": [ + "WBC", + "leucocyte", + "white blood cell" + ] + }, + { + "cl_id": "CL:0000740", + "label": "retinal ganglion cell", + "exact_synonyms": [ + "gangliocyte", + "ganglion cell of retina" + ] + }, + { + "cl_id": "CL:0000741", + "label": "spinal accessory motor neuron", + "exact_synonyms": [ + "SACMN" + ] + }, + { + "cl_id": "CL:0000742", + "label": "periarticular chondrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000743", + "label": "hypertrophic chondrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000744", + "label": "columnar chondrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000745", + "label": "retina horizontal cell", + "exact_synonyms": [ + "horizontal cell" + ] + }, + { + "cl_id": "CL:0000746", + "label": "cardiac muscle cell", + "exact_synonyms": [ + "cardiac muscle fiber", + "cardiac myocyte", + "cardiomyocyte", + "heart muscle cell" + ] + }, + { + "cl_id": "CL:0000747", + "label": "cyanophore", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000748", + "label": "retinal bipolar neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000749", + "label": "ON-bipolar cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000750", + "label": "OFF-bipolar cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000751", + "label": "rod bipolar cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000752", + "label": "cone retinal bipolar cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000753", + "label": "type 1 cone bipolar cell (sensu Mus)", + "exact_synonyms": [ + "DB1 cone bipolar cell" + ] + }, + { + "cl_id": "CL:0000754", + "label": "type 2 cone bipolar cell (sensu Mus)", + "exact_synonyms": [ + "FMB cone bipolar cell" + ] + }, + { + "cl_id": "CL:0000755", + "label": "type 3 cone bipolar cell (sensu Mus)", + "exact_synonyms": [ + "DB2 cone bipolar cell" + ] + }, + { + "cl_id": "CL:0000756", + "label": "type 4 cone bipolar cell (sensu Mus)", + "exact_synonyms": [ + "DB3 cone bipolar cell" + ] + }, + { + "cl_id": "CL:0000757", + "label": "type 5 cone bipolar cell (sensu Mus)", + "exact_synonyms": [ + "DB4 cone bipolar cell" + ] + }, + { + "cl_id": "CL:0000758", + "label": "type 6 cone bipolar cell (sensu Mus)", + "exact_synonyms": [ + "DB5 cone bipolar cell" + ] + }, + { + "cl_id": "CL:0000759", + "label": "type 7 cone bipolar cell (sensu Mus)", + "exact_synonyms": [ + "IMB cone bipolar cell" + ] + }, + { + "cl_id": "CL:0000760", + "label": "type 8 cone bipolar cell (sensu Mus)", + "exact_synonyms": [ + "DB6 cone bipolar cell" + ] + }, + { + "cl_id": "CL:0000761", + "label": "type 9 cone bipolar cell (sensu Mus)", + "exact_synonyms": [ + "BB cone bipolar cell" + ] + }, + { + "cl_id": "CL:0000762", + "label": "nucleated thrombocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000763", + "label": "myeloid cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000764", + "label": "erythroid lineage cell", + "exact_synonyms": [ + "erythropoietic cell" + ] + }, + { + "cl_id": "CL:0000765", + "label": "erythroblast", + "exact_synonyms": [ + "normoblast" + ] + }, + { + "cl_id": "CL:0000766", + "label": "myeloid leukocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000767", + "label": "basophil", + "exact_synonyms": [ + "basophilic leucocyte", + "basophilic leukocyte" + ] + }, + { + "cl_id": "CL:0000768", + "label": "immature basophil", + "exact_synonyms": [ + "immature basophilic leucocyte", + "immature basophilic leukocyte" + ] + }, + { + "cl_id": "CL:0000769", + "label": "basophilic metamyelocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000770", + "label": "band form basophil", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000771", + "label": "eosinophil", + "exact_synonyms": [ + "eosinocyte", + "eosinophilic granulocyte", + "eosinophilic leucocyte", + "eosinophilic leukocyte" + ] + }, + { + "cl_id": "CL:0000772", + "label": "immature eosinophil", + "exact_synonyms": [ + "immature eosinocyte", + "immature eosinophilic leucocyte", + "immature eosinophilic leukocyte" + ] + }, + { + "cl_id": "CL:0000773", + "label": "eosinophilic metamyelocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000774", + "label": "band form eosinophil", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000775", + "label": "neutrophil", + "exact_synonyms": [ + "neutrocyte", + "neutrophil leucocyte", + "neutrophil leukocyte", + "neutrophilic leucocyte", + "neutrophilic leukocyte" + ] + }, + { + "cl_id": "CL:0000776", + "label": "immature neutrophil", + "exact_synonyms": [ + "immatuer neutrophilic leukocyte", + "immature neutrocyte", + "immature neutrophil leucocyte", + "immature neutrophil leukocyte", + "immature neutrophilic leucocyte" + ] + }, + { + "cl_id": "CL:0000777", + "label": "mesangial phagocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000778", + "label": "mononuclear osteoclast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000779", + "label": "multinuclear osteoclast", + "exact_synonyms": [ + "multinucleated osteoclast" + ] + }, + { + "cl_id": "CL:0000780", + "label": "multinuclear odontoclast", + "exact_synonyms": [ + "multinucleated odontoclast" + ] + }, + { + "cl_id": "CL:0000781", + "label": "mononuclear odontoclast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000782", + "label": "myeloid dendritic cell", + "exact_synonyms": [ + "CD11c+CD123- DC", + "mDC" + ] + }, + { + "cl_id": "CL:0000783", + "label": "multinucleated phagocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000784", + "label": "plasmacytoid dendritic cell", + "exact_synonyms": [ + "DC2", + "IPC", + "T-associated plasma cell", + "interferon-producing cell", + "lymphoid dendritic cell", + "pDC", + "plasmacytoid T cell", + "plasmacytoid monocyte", + "type 2 DC" + ] + }, + { + "cl_id": "CL:0000785", + "label": "mature B cell", + "exact_synonyms": [ + "mature B lymphocyte", + "mature B-cell", + "mature B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000786", + "label": "plasma cell", + "exact_synonyms": [ + "plasma B cell", + "plasma B-cell", + "plasmacyte", + "plasmocyte" + ] + }, + { + "cl_id": "CL:0000787", + "label": "memory B cell", + "exact_synonyms": [ + "memory B lymphocyte", + "memory B-cell", + "memory B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000788", + "label": "naive B cell", + "exact_synonyms": [ + "naive B lymphocyte", + "naive B-cell", + "naive B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000789", + "label": "alpha-beta T cell", + "exact_synonyms": [ + "alpha-beta T lymphocyte", + "alpha-beta T-cell", + "alpha-beta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000790", + "label": "immature alpha-beta T cell", + "exact_synonyms": [ + "immature alpha-beta T lymphocyte", + "immature alpha-beta T-cell", + "immature alpha-beta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000791", + "label": "mature alpha-beta T cell", + "exact_synonyms": [ + "mature alpha-beta T lymphocyte", + "mature alpha-beta T-cell", + "mature alpha-beta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000792", + "label": "CD4-positive, CD25-positive, alpha-beta regulatory T cell", + "exact_synonyms": [ + "CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte", + "CD4-positive, CD25-positive, alpha-beta regulatory T-cell", + "CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000793", + "label": "CD4-positive, alpha-beta intraepithelial T cell", + "exact_synonyms": [ + "CD4-positive, alpha-beta intraepithelial T lymphocyte", + "CD4-positive, alpha-beta intraepithelial T-cell", + "CD4-positive, alpha-beta intraepithelial T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000794", + "label": "CD8-positive, alpha-beta cytotoxic T cell", + "exact_synonyms": [ + "CD8-positive, alpha-beta cytotoxic T lymphocyte", + "CD8-positive, alpha-beta cytotoxic T-cell", + "CD8-positive, alpha-beta cytotoxic T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000795", + "label": "CD8-positive, alpha-beta regulatory T cell", + "exact_synonyms": [ + "CD8+ T(reg)", + "CD8+ Treg", + "CD8+ regulatory T cell", + "CD8-positive T(reg)", + "CD8-positive Treg", + "CD8-positive, alpha-beta Treg", + "CD8-positive, alpha-beta regulatory T lymphocyte", + "CD8-positive, alpha-beta regulatory T-cell", + "CD8-positive, alpha-beta regulatory T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000796", + "label": "CD8-alpha-beta-positive, alpha-beta intraepithelial T cell", + "exact_synonyms": [ + "CD8-positive, alpha-beta intraepithelial T lymphocyte", + "CD8-positive, alpha-beta intraepithelial T-cell", + "CD8-positive, alpha-beta intraepithelial T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000797", + "label": "alpha-beta intraepithelial T cell", + "exact_synonyms": [ + "alpha-beta intraepithelial T lymphocyte", + "alpha-beta intraepithelial T-cell", + "alpha-beta intraepithelial T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000798", + "label": "gamma-delta T cell", + "exact_synonyms": [ + "gamma-delta T lymphocyte", + "gamma-delta T-cell", + "gamma-delta T-lymphocyte", + "gammadelta T cell" + ] + }, + { + "cl_id": "CL:0000799", + "label": "immature gamma-delta T cell", + "exact_synonyms": [ + "immature gamma-delta T lymphocyte", + "immature gamma-delta T-cell", + "immature gamma-delta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000800", + "label": "mature gamma-delta T cell", + "exact_synonyms": [ + "mature gamma-delta T lymphocyte", + "mature gamma-delta T-cell", + "mature gamma-delta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000801", + "label": "gamma-delta intraepithelial T cell", + "exact_synonyms": [ + "gamma-delta intraepithelial T lymphocyte", + "gamma-delta intraepithelial T-cell", + "gamma-delta intraepithelial T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000802", + "label": "CD8-alpha alpha positive, gamma-delta intraepithelial T cell", + "exact_synonyms": [ + "CD8-positive, gamma-delta intraepithelial T lymphocyte", + "CD8-positive, gamma-delta intraepithelial T-cell", + "CD8-positive, gamma-delta intraepithelial T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000803", + "label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell", + "exact_synonyms": [ + "CD4-positive, gamma-delta intraepithelial T lymphocyte", + "CD4-positive, gamma-delta intraepithelial T-cell", + "CD4-positive, gamma-delta intraepithelial T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000805", + "label": "immature single positive thymocyte", + "exact_synonyms": [ + "ISP", + "T.ISP.th", + "immature single positive T cell", + "immature single positive T lymphocyte", + "immature single positive T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000806", + "label": "DN2 thymocyte", + "exact_synonyms": [ + "DN2 alpha-beta immature T lymphocyte", + "DN2 alpha-beta immature T-cell", + "DN2 alpha-beta immature T-lymphocyte", + "DN2 cell", + "DN2 immature T cell", + "TN2 cell", + "TN2 thymocyte", + "double negative 2", + "preT.DN2.Th" + ] + }, + { + "cl_id": "CL:0000807", + "label": "DN3 thymocyte", + "exact_synonyms": [ + "DN3 alpha-beta immature T lymphocyte", + "DN3 alpha-beta immature T-cell", + "DN3 alpha-beta immature T-lymphocyte", + "DN3 cell", + "DN3 immature T cell", + "TN3 cell", + "TN3 thymocyte", + "double negative 3", + "preT.DN3.Th" + ] + }, + { + "cl_id": "CL:0000808", + "label": "DN4 thymocyte", + "exact_synonyms": [ + "DN4 alpha-beta immature T lymphocyte", + "DN4 alpha-beta immature T-lymphocyte", + "DN4 cell", + "DN4 immature T cell", + "DN4 immature T-cell", + "T.DN4.th", + "double negative 4" + ] + }, + { + "cl_id": "CL:0000809", + "label": "double-positive, alpha-beta thymocyte", + "exact_synonyms": [ + "DP cell", + "DP thymocyte", + "double-positive, alpha-beta immature T lymphocyte" + ] + }, + { + "cl_id": "CL:0000810", + "label": "CD4-positive, alpha-beta thymocyte", + "exact_synonyms": [ + "CD4-positive, alpha-beta immature T lymphocyte", + "CD4-positive, alpha-beta immature T-cell", + "CD4-positive, alpha-beta immature T-lymphocyte", + "SP CD4 cell" + ] + }, + { + "cl_id": "CL:0000811", + "label": "CD8-positive, alpha-beta thymocyte", + "exact_synonyms": [ + "CD8-positive, alpha-beta immature T lymphocyte", + "CD8-positive, alpha-beta immature T-cell", + "CD8-positive, alpha-beta immature T-lymphocyte", + "SP CD8 cell" + ] + }, + { + "cl_id": "CL:0000813", + "label": "memory T cell", + "exact_synonyms": [ + "memory T lymphocyte", + "memory T-cell", + "memory T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000814", + "label": "mature NK T cell", + "exact_synonyms": [ + "mature NK T lymphocyte", + "mature NK T-cell", + "mature NK T-lymphocyte", + "mature NKT cell", + "mature natural killer T cell", + "mature natural killer T lymphocyte", + "mature natural killer T-cell", + "mature natural killer T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000815", + "label": "regulatory T cell", + "exact_synonyms": [ + "Treg", + "regulatory T lymphocyte", + "regulatory T-cell", + "regulatory T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000816", + "label": "immature B cell", + "exact_synonyms": [ + "immature B lymphocyte", + "immature B-cell", + "immature B-lymphocyte", + "newly formed B cell" + ] + }, + { + "cl_id": "CL:0000817", + "label": "precursor B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000818", + "label": "transitional stage B cell", + "exact_synonyms": [ + "transitional B cell", + "transitional stage B lymphocyte", + "transitional stage B-cell", + "transitional stage B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000819", + "label": "B-1 B cell", + "exact_synonyms": [ + "B-1 B lymphocyte", + "B-1 B-cell", + "B-1 B-lymphocyte", + "B-1 cell", + "B1 B cell", + "B1 B lymphocyte", + "B1 B-cell", + "B1 B-lymphocyte", + "B1 cell" + ] + }, + { + "cl_id": "CL:0000820", + "label": "B-1a B cell", + "exact_synonyms": [ + "B-1a B lymphocyte", + "B-1a B-cell", + "B-1a B-lymphocyte", + "B1a B cell", + "B1a B lymphocyte", + "B1a B-cell", + "B1a B-lymphocyte", + "B1a cell", + "CD5(+) B1 cell", + "CD5+ B1 cell", + "CD5-positive B1 cell" + ] + }, + { + "cl_id": "CL:0000821", + "label": "B-1b B cell", + "exact_synonyms": [ + "B-1b B lymphocyte", + "B-1b B-cell", + "B-1b B-lymphocyte", + "B1b B cell", + "B1b B lymphocyte", + "B1b B-cell", + "B1b B-lymphocyte", + "B1b cell" + ] + }, + { + "cl_id": "CL:0000822", + "label": "B-2 B cell", + "exact_synonyms": [ + "B-2 B lymphocyte", + "B-2 B-cell", + "B-2 B-lymphocyte", + "B2 B cell", + "B2 B lymphocyte", + "B2 B-cell", + "B2 B-lymphocyte", + "B2 cell" + ] + }, + { + "cl_id": "CL:0000823", + "label": "immature natural killer cell", + "exact_synonyms": [ + "immature NK cell" + ] + }, + { + "cl_id": "CL:0000824", + "label": "mature natural killer cell", + "exact_synonyms": [ + "mature NK cell" + ] + }, + { + "cl_id": "CL:0000825", + "label": "pro-NK cell", + "exact_synonyms": [ + "NKP", + "natural killer cell progenitor", + "pro-natural killer cell" + ] + }, + { + "cl_id": "CL:0000826", + "label": "pro-B cell", + "exact_synonyms": [ + "pro-B lymphocyte", + "pro-B-cell", + "pro-B-lymphocyte", + "progenitor B cell", + "progenitor B lymphocyte", + "progenitor B-cell", + "progenitor B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000827", + "label": "pro-T cell", + "exact_synonyms": [ + "pro-T lymphocyte", + "progenitor T cell" + ] + }, + { + "cl_id": "CL:0000828", + "label": "thromboblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000829", + "label": "basophilic myeloblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000830", + "label": "basophilic promyelocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000831", + "label": "mast cell progenitor", + "exact_synonyms": [ + "MCP" + ] + }, + { + "cl_id": "CL:0000832", + "label": "eosinophilic myeloblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000833", + "label": "eosinophilic promyelocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000834", + "label": "neutrophil progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000835", + "label": "myeloblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000836", + "label": "promyelocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000837", + "label": "hematopoietic multipotent progenitor cell", + "exact_synonyms": [ + "MPP", + "hemopoietic progenitor cell" + ] + }, + { + "cl_id": "CL:0000838", + "label": "lymphoid lineage restricted progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000839", + "label": "myeloid lineage restricted progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000840", + "label": "immature conventional dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000841", + "label": "mature conventional dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000842", + "label": "mononuclear leukocyte", + "exact_synonyms": [ + "mononuclear cell" + ] + }, + { + "cl_id": "CL:0000843", + "label": "follicular B cell", + "exact_synonyms": [ + "Fo B cell", + "Fo B-cell", + "follicular B lymphocyte", + "follicular B-cell", + "follicular B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000844", + "label": "germinal center B cell", + "exact_synonyms": [ + "GC B cell", + "GC B lymphocyte", + "GC B-cell", + "GC B-lymphocyte", + "germinal center B lymphocyte", + "germinal center B-cell", + "germinal center B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000845", + "label": "marginal zone B cell of spleen", + "exact_synonyms": [ + "B cell of marginal zone of spleen", + "marginal zone of spleen B cell" + ] + }, + { + "cl_id": "CL:0000846", + "label": "vestibular dark cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000847", + "label": "ciliated olfactory receptor neuron", + "exact_synonyms": [ + "ciliated olfactory sensory neuron", + "ciliated sensory neuron" + ] + }, + { + "cl_id": "CL:0000848", + "label": "microvillous olfactory receptor neuron", + "exact_synonyms": [ + "microvillous olfactory sensory neuron" + ] + }, + { + "cl_id": "CL:0000849", + "label": "crypt olfactory receptor neuron", + "exact_synonyms": [ + "crypt cell", + "crypt olfactory sensory neuron", + "crypt sensory neuron" + ] + }, + { + "cl_id": "CL:0000850", + "label": "serotonergic neuron", + "exact_synonyms": [ + "5-HT neuron", + "5-hydroxytryptamine neuron" + ] + }, + { + "cl_id": "CL:0000851", + "label": "neuromast mantle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000852", + "label": "neuromast supporting cell", + "exact_synonyms": [ + "neuromast support cell" + ] + }, + { + "cl_id": "CL:0000853", + "label": "olfactory epithelial supporting cell", + "exact_synonyms": [ + "olfactory epithelial support cell", + "olfactory sustentacular cell", + "supporting cell of olfactory epithelium", + "sustentaculocyte of olfactory epithelium" + ] + }, + { + "cl_id": "CL:0000854", + "label": "interneuromast cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000855", + "label": "sensory hair cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000856", + "label": "neuromast hair cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000857", + "label": "slow muscle myoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000858", + "label": "fast muscle myoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000860", + "label": "classical monocyte", + "exact_synonyms": [ + "inflammatory monocyte" + ] + }, + { + "cl_id": "CL:0000861", + "label": "elicited macrophage", + "exact_synonyms": [ + "free macrophage", + "wandering histiocyte" + ] + }, + { + "cl_id": "CL:0000862", + "label": "suppressor macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000863", + "label": "M1 macrophage", + "exact_synonyms": [ + "classically activated macrophage", + "inflammatory macrophage" + ] + }, + { + "cl_id": "CL:0000864", + "label": "tissue-resident macrophage", + "exact_synonyms": [ + "fixed macrophage", + "resting histiocyte" + ] + }, + { + "cl_id": "CL:0000865", + "label": "gastrointestinal tract (lamina propria) macrophage", + "exact_synonyms": [ + "gastrointestinal system (lamina propria) macrophage", + "macrophage of gastrointestinal system (lamina propria)", + "macrophage of gastrointestinal tract (lamina propria)" + ] + }, + { + "cl_id": "CL:0000866", + "label": "thymic macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000867", + "label": "secondary lymphoid organ macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000868", + "label": "lymph node macrophage", + "exact_synonyms": [ + "MF.LN" + ] + }, + { + "cl_id": "CL:0000869", + "label": "tonsillar macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000870", + "label": "Peyer's patch macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000871", + "label": "splenic macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000872", + "label": "splenic marginal zone macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000873", + "label": "splenic metallophillic macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000874", + "label": "splenic red pulp macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000875", + "label": "non-classical monocyte", + "exact_synonyms": [ + "patrolling monocyte", + "resident monocyte" + ] + }, + { + "cl_id": "CL:0000876", + "label": "splenic white pulp macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000877", + "label": "splenic tingible body macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000878", + "label": "central nervous system macrophage", + "exact_synonyms": [ + "CNS macrophage" + ] + }, + { + "cl_id": "CL:0000879", + "label": "meningeal macrophage", + "exact_synonyms": [ + "subdural leptomeningeal macrophage", + "subdural meningeal macrophage" + ] + }, + { + "cl_id": "CL:0000880", + "label": "choroid plexus macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000881", + "label": "perivascular macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000882", + "label": "thymic medullary macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000883", + "label": "thymic cortical macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000884", + "label": "mucosa-associated lymphoid tissue macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000885", + "label": "gut-associated lymphoid tissue macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000886", + "label": "nasal and broncial associated lymphoid tissue macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000887", + "label": "lymph node subcapsular sinus macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000888", + "label": "lymph node tingible body macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000889", + "label": "myeloid suppressor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000890", + "label": "M2 macrophage", + "exact_synonyms": [ + "alternatively activated macrophage" + ] + }, + { + "cl_id": "CL:0000891", + "label": "foam cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000892", + "label": "smooth muscle cell derived foam cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000893", + "label": "thymocyte", + "exact_synonyms": [ + "thymic lymphocyte" + ] + }, + { + "cl_id": "CL:0000894", + "label": "DN1 thymic pro-T cell", + "exact_synonyms": [ + "DN1 thymic pro-T lymphocyte", + "DN1 thymic pro-T-cell", + "DN1 thymic pro-T-lymphocyte", + "DN1 thymic progenitor T cell", + "DN1 thymocyte", + "double negative 1", + "preT.DN1.Th" + ] + }, + { + "cl_id": "CL:0000895", + "label": "naive thymus-derived CD4-positive, alpha-beta T cell", + "exact_synonyms": [ + "T.4Nve.Sp", + "Th0", + "naive thymus-derived CD4-positive, alpha-beta T lymphocyte", + "naive thymus-derived CD4-positive, alpha-beta T-cell", + "naive thymus-derived CD4-positive, alpha-beta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000896", + "label": "activated CD4-positive, alpha-beta T cell", + "exact_synonyms": [ + "activated CD4-positive, alpha-beta T lymphocyte", + "activated CD4-positive, alpha-beta T-cell", + "activated CD4-positive, alpha-beta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000897", + "label": "CD4-positive, alpha-beta memory T cell", + "exact_synonyms": [ + "CD4-positive, alpha-beta memory T lymphocyte", + "CD4-positive, alpha-beta memory T-cell", + "CD4-positive, alpha-beta memory T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000898", + "label": "naive T cell", + "exact_synonyms": [ + "naive T lymphocyte", + "naive T-cell", + "naive T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000899", + "label": "T-helper 17 cell", + "exact_synonyms": [ + "IL-17-producing CD4+ T helper", + "T helper cells type 17", + "T(H)-17 cell", + "Th17 CD4+ T cell", + "Th17 T cell", + "Th17 T lymphocyte", + "Th17 T-cell", + "Th17 T-lymphocyte", + "Th17 cell", + "helper T cell type 17" + ] + }, + { + "cl_id": "CL:0000900", + "label": "naive thymus-derived CD8-positive, alpha-beta T cell", + "exact_synonyms": [ + "naive thymus-dervied CD8-positive, alpha-beta T lymphocyte", + "naive thymus-dervied CD8-positive, alpha-beta T-cell", + "naive thymus-dervied CD8-positive, alpha-beta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000901", + "label": "Tr1 cell", + "exact_synonyms": [ + "T-regulatory T cell type 1", + "Tr1 T cell", + "Tr1 T lymphocyte", + "Tr1 T-cell", + "Tr1 T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000902", + "label": "induced T-regulatory cell", + "exact_synonyms": [ + "iTreg", + "induced Treg", + "induced regulatory T cell", + "induced regulatory T lymphocyte", + "induced regulatory T-cell", + "induced regulatory T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000903", + "label": "natural T-regulatory cell", + "exact_synonyms": [ + "nTreg", + "natural Treg", + "natural regulatory T cell", + "natural regulatory T lymphocyte", + "natural regulatory T-cell", + "natural regulatory T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000904", + "label": "central memory CD4-positive, alpha-beta T cell", + "exact_synonyms": [ + "central CD4-positive, alpha-beta memory T cell", + "central CD4-positive, alpha-beta memory T lymphocyte", + "central CD4-positive, alpha-beta memory T-cell", + "central CD4-positive, alpha-beta memory T-lymphocyte", + "central memory CD4-positive, alpha-beta T lymphocyte", + "central memory CD4-positive, alpha-beta T-cell", + "central memory CD4-positive, alpha-beta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000905", + "label": "effector memory CD4-positive, alpha-beta T cell", + "exact_synonyms": [ + "effector CD4-positive, alpha-beta memory T cell", + "effector CD4-positive, alpha-beta memory T lymphocyte", + "effector CD4-positive, alpha-beta memory T-cell", + "effector CD4-positive, alpha-beta memory T-lymphocyte", + "effector memory CD4-positive, alpha-beta T lymphocyte", + "effector memory CD4-positive, alpha-beta T-cell", + "effector memory CD4-positive, alpha-beta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000906", + "label": "activated CD8-positive, alpha-beta T cell", + "exact_synonyms": [ + "activated CD8-positive, alpha-beta T lymphocyte", + "activated CD8-positive, alpha-beta T-cell", + "activated CD8-positive, alpha-beta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000907", + "label": "central memory CD8-positive, alpha-beta T cell", + "exact_synonyms": [ + "central CD8-positive, alpha-beta memory T cell", + "central CD8-positive, alpha-beta memory T lymphocyte", + "central CD8-positive, alpha-beta memory T-cell", + "central CD8-positive, alpha-beta memory T-lymphocyte", + "central memory CD8-positive, alpha-beta T lymphocyte", + "central memory CD8-positive, alpha-beta T-cell", + "central memory CD8-positive, alpha-beta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000908", + "label": "CD8-positive, alpha-beta cytokine secreting effector T cell", + "exact_synonyms": [ + "CD8-positive, alpha-beta cytokine secreting effector T lymphocyte", + "CD8-positive, alpha-beta cytokine secreting effector T-cell", + "CD8-positive, alpha-beta cytokine secreting effector T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000909", + "label": "CD8-positive, alpha-beta memory T cell", + "exact_synonyms": [ + "CD8-positive, alpha-beta memory T lymphocyte", + "CD8-positive, alpha-beta memory T-cell", + "CD8-positive, alpha-beta memory T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000910", + "label": "cytotoxic T cell", + "exact_synonyms": [ + "cytotoxic T lymphocyte", + "cytotoxic T-cell", + "cytotoxic T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000911", + "label": "effector T cell", + "exact_synonyms": [ + "effector T lymphocyte", + "effector T-cell", + "effector T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000912", + "label": "helper T cell", + "exact_synonyms": [ + "T-helper cell", + "helper T lymphocyte", + "helper T-cell", + "helper T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000913", + "label": "effector memory CD8-positive, alpha-beta T cell", + "exact_synonyms": [ + "effector CD8-positive, alpha-beta memory T cell", + "effector CD8-positive, alpha-beta memory T lymphocyte", + "effector CD8-positive, alpha-beta memory T-cell", + "effector CD8-positive, alpha-beta memory T-lymphocyte", + "effector memory CD8-positive, alpha-beta T lymphocyte", + "effector memory CD8-positive, alpha-beta T-cell", + "effector memory CD8-positive, alpha-beta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000914", + "label": "immature NK T cell", + "exact_synonyms": [ + "immature NK T lymphocyte", + "immature NK T-cell", + "immature NK T-lymphocyte", + "immature NKT cell" + ] + }, + { + "cl_id": "CL:0000915", + "label": "CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell", + "exact_synonyms": [ + "CD8-alpha-alpha-positive, alpha-beta intraepithelial T lymphocyte", + "CD8-alpha-alpha-positive, alpha-beta intraepithelial T-cell", + "CD8-alpha-alpha-positive, alpha-beta intraepithelial T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000916", + "label": "dendritic epidermal T cell", + "exact_synonyms": [ + "DETC", + "dendritic epidermal T lymphocyte", + "dendritic epidermal T-cell", + "dendritic epidermal T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000917", + "label": "Tc1 cell", + "exact_synonyms": [ + "CD8-positive Th1 cell", + "T-cytotoxic T cell type 1", + "Tc1 CD8+ T cell", + "Tc1 T cell", + "Tc1 T lymphocyte", + "Tc1 T-cell", + "Tc1 T-lymphocyte", + "Th1 CD8-positive T cell", + "Th1 non-TFH CD8-positive T cell" + ] + }, + { + "cl_id": "CL:0000918", + "label": "Tc2 cell", + "exact_synonyms": [ + "CD8-positive Th2 cell", + "T-cytotoxic T cell type 2", + "Tc2 T cell", + "Tc2 T lymphocyte", + "Tc2 T-cell", + "Tc2 T-lymphocyte", + "Th2 CD8-positive T cell", + "Th2 non-TFH CD8-positive T cell" + ] + }, + { + "cl_id": "CL:0000919", + "label": "CD8-positive, CD25-positive, alpha-beta regulatory T cell", + "exact_synonyms": [ + "CD8+CD25+ T cell", + "CD8+CD25+ T lymphocyte", + "CD8+CD25+ T(reg)", + "CD8+CD25+ T-cell", + "CD8+CD25+ T-lymphocyte", + "CD8+CD25+ Treg", + "CD8-positive, CD25-positive Treg", + "CD8-positive, CD25-positive, alpha-beta regulatory T lymphocyte", + "CD8-positive, CD25-positive, alpha-beta regulatory T-cell", + "CD8-positive, CD25-positive, alpha-beta regulatory T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000920", + "label": "CD8-positive, CD28-negative, alpha-beta regulatory T cell", + "exact_synonyms": [ + "CD8+CD28- T cell", + "CD8+CD28- T lymphocyte", + "CD8+CD28- T(reg)", + "CD8+CD28- T-cell", + "CD8+CD28- T-lymphocyte", + "CD8+CD28- Treg", + "CD8-positive, CD28-negative T(reg)", + "CD8-positive, CD28-negative Treg", + "CD8-positive, CD28-negative, alpha-beta regulatory T lymphocyte", + "CD8-positive, CD28-negative, alpha-beta regulatory T-cell", + "CD8-positive, CD28-negative, alpha-beta regulatory T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000921", + "label": "type I NK T cell", + "exact_synonyms": [ + "classical NK T cell", + "type I NK T lymphocyte", + "type I NK T-cell", + "type I NK T-lymphocyte", + "type I NKT cell" + ] + }, + { + "cl_id": "CL:0000922", + "label": "type II NK T cell", + "exact_synonyms": [ + "type II NK T lymphocyte", + "type II NK T-cell", + "type II NK T-lymphocyte", + "type II NKT cell" + ] + }, + { + "cl_id": "CL:0000923", + "label": "CD4-positive type I NK T cell", + "exact_synonyms": [ + "CD4-positive type I NK T lymphocyte", + "CD4-positive type I NK T-cell", + "CD4-positive type I NK T-lymphocyte", + "CD4-positive type I NKT cell" + ] + }, + { + "cl_id": "CL:0000924", + "label": "CD4-negative, CD8-negative type I NK T cell", + "exact_synonyms": [ + "CD4-negative, CD8-negative type I NK T lymphocyte", + "CD4-negative, CD8-negative type I NK T-cell", + "CD4-negative, CD8-negative type I NK T-lymphocyte", + "CD4-negative, CD8-negative type I NKT cell" + ] + }, + { + "cl_id": "CL:0000925", + "label": "activated CD4-positive type I NK T cell", + "exact_synonyms": [ + "activated CD4-positive type I NK T lymphocyte", + "activated CD4-positive type I NK T-cell", + "activated CD4-positive type I NK T-lymphocyte", + "activated CD4-positive type I NKT cell" + ] + }, + { + "cl_id": "CL:0000926", + "label": "CD4-positive type I NK T cell secreting interferon-gamma", + "exact_synonyms": [ + "CD4-positive type I NK T cell secreting IFN-gamma", + "CD4-positive type I NK T lymphocyte secreting interferon-gamma", + "CD4-positive type I NK T-cell secreting interferon-gamma", + "CD4-positive type I NK T-lymphocyte secreting interferon-gamma", + "CD4-positive type I NKT cell secreting interferon-gamma" + ] + }, + { + "cl_id": "CL:0000927", + "label": "CD4-positive type I NK T cell secreting interleukin-4", + "exact_synonyms": [ + "CD4-positive type I NK T cell secreting IL-4", + "CD4-positive type I NK T lymphocyte secreting interleukin-4", + "CD4-positive type I NK T-cell secreting interleukin-4", + "CD4-positive type I NK T-lymphocyte secreting interleukin-4", + "CD4-positive type I NKT cell secreting interleukin-4" + ] + }, + { + "cl_id": "CL:0000928", + "label": "activated CD4-negative, CD8-negative type I NK T cell", + "exact_synonyms": [ + "activated CD4-negative, CD8-negative type I NK T lymphocyte", + "activated CD4-negative, CD8-negative type I NK T-cell", + "activated CD4-negative, CD8-negative type I NK T-lymphocyte", + "activated CD4-negative, CD8-negative type I NKT cell" + ] + }, + { + "cl_id": "CL:0000929", + "label": "CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma", + "exact_synonyms": [ + "CD4-negative, CD8-negative type I NK T cell secreting IFN-gamma", + "CD4-negative, CD8-negative type I NK T lymphocyte secreting interferon-gamma", + "CD4-negative, CD8-negative type I NK T-cell secreting interferon-gamma", + "CD4-negative, CD8-negative type I NK T-lymphocyte secreting interferon-gamma", + "CD4-negative, CD8-negative type I NKT cell secreting interferon-gamma" + ] + }, + { + "cl_id": "CL:0000930", + "label": "CD4-negative, CD8-negative type I NK T cell secreting interleukin-4", + "exact_synonyms": [ + "CD4-negative, CD8-negative type I NK T cell secreting IL-4", + "CD4-negative, CD8-negative type I NK T lymphocyte secreting interleukin-4", + "CD4-negative, CD8-negative type I NK T-cell secreting interleukin-4", + "CD4-negative, CD8-negative type I NK T-lymphocyte secreting interleukin-4", + "CD4-negative, CD8-negative type I NKT cell secreting interleukin-4" + ] + }, + { + "cl_id": "CL:0000931", + "label": "activated type II NK T cell", + "exact_synonyms": [ + "activated type II NK T lymphocyte", + "activated type II NK T-cell", + "activated type II NK T-lymphocyte", + "activated type II NKT cell" + ] + }, + { + "cl_id": "CL:0000932", + "label": "type II NK T cell secreting interferon-gamma", + "exact_synonyms": [ + "type II NK T cell secreting IFN-gamma", + "type II NK T lymphocyte secreting interferon-gamma", + "type II NK T-cell secreting interferon-gamma", + "type II NK T-lymphocyte secreting interferon-gamma", + "type II NKT cell secreting interferon-gamma" + ] + }, + { + "cl_id": "CL:0000933", + "label": "type II NK T cell secreting interleukin-4", + "exact_synonyms": [ + "type II NK T cell secreting IL-4", + "type II NK T lymphocyte secreting interleukin-4", + "type II NK T-cell secreting interleukin-4", + "type II NK T-lymphocyte secreting interleukin-4", + "type II NKT cell secreting interleukin-4" + ] + }, + { + "cl_id": "CL:0000934", + "label": "CD4-positive, alpha-beta cytotoxic T cell", + "exact_synonyms": [ + "CD4-positive, alpha-beta cytotoxic T lymphocyte", + "CD4-positive, alpha-beta cytotoxic T-cell", + "CD4-positive, alpha-beta cytotoxic T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000935", + "label": "CD4-negative, CD8-negative, alpha-beta intraepithelial T cell", + "exact_synonyms": [ + "CD4-negative, CD8-negative, alpha-beta intraepithelial T lymphocyte", + "CD4-negative, CD8-negative, alpha-beta intraepithelial T-cell", + "CD4-negative, CD8-negative, alpha-beta intraepithelial T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000936", + "label": "early lymphoid progenitor", + "exact_synonyms": [ + "lymphoid-primed multipotent progenitor" + ] + }, + { + "cl_id": "CL:0000937", + "label": "pre-natural killer cell", + "exact_synonyms": [ + "pre-NK cell" + ] + }, + { + "cl_id": "CL:0000938", + "label": "CD16-negative, CD56-bright natural killer cell, human", + "exact_synonyms": [ + "CD16-CD56bright NK cell", + "CD16-negative, CD56-bright NK cell", + "CD56-bright cytokine secreting NK cell", + "CD56-bright cytokine secreting natural killer cell" + ] + }, + { + "cl_id": "CL:0000939", + "label": "CD16-positive, CD56-dim natural killer cell, human", + "exact_synonyms": [ + "CD16+CD56+ NK cell", + "CD16-positive, CD56-dim NK cell", + "CD16-positive, CD56-low NK cell", + "CD16-positive, CD56-low natural killer cell", + "CD16-positive, CD56-positive NK cell", + "CD16-positive, CD56-positive natural killer cell", + "cytotoxic CD56-dim NK cell", + "cytotoxic CD56-dim natural killer cell" + ] + }, + { + "cl_id": "CL:0000940", + "label": "mucosal-associated invariant T cell", + "exact_synonyms": [ + "mucosal invariant T cell", + "mucosal invariant T lymphocyte", + "mucosal invariant T-cell", + "mucosal invariant T-lymphocyte", + "mucosal-associated invariant T lymphocyte", + "mucosal-associated invariant T-cell", + "mucosal-associated invariant T-lymphocyte" + ] + }, + { + "cl_id": "CL:0000941", + "label": "thymic conventional dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000942", + "label": "thymic plasmacytoid dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000943", + "label": "Be1 Cell", + "exact_synonyms": [ + "B effector 1 cell" + ] + }, + { + "cl_id": "CL:0000944", + "label": "Be2 cell", + "exact_synonyms": [ + "B effector 2 cell" + ] + }, + { + "cl_id": "CL:0000945", + "label": "lymphocyte of B lineage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000946", + "label": "antibody secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000947", + "label": "IgE plasma cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000948", + "label": "IgE memory B cell", + "exact_synonyms": [ + "IgE memory B lymphocyte", + "IgE memory B-cell", + "IgE memory B-lymphocyte", + "memory IgE B cell", + "memory IgE B lymphocyte", + "memory IgE B-cell", + "memory IgE B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000949", + "label": "IgD plasmablast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000950", + "label": "IgE plasmablast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000951", + "label": "IgE short lived plasma cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000952", + "label": "preBCR-positive large pre-B-II cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000953", + "label": "preBCR-negative large pre-B-II cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000954", + "label": "small pre-B-II cell", + "exact_synonyms": [ + "small pre-BII cell" + ] + }, + { + "cl_id": "CL:0000955", + "label": "pre-B-II cell", + "exact_synonyms": [ + "pre-B-lymphocyte", + "pre-BII cell" + ] + }, + { + "cl_id": "CL:0000956", + "label": "pre-B-I cell", + "exact_synonyms": [ + "pre-BI cell" + ] + }, + { + "cl_id": "CL:0000957", + "label": "large pre-B-II cell", + "exact_synonyms": [ + "large pre-BII cell" + ] + }, + { + "cl_id": "CL:0000958", + "label": "T1 B cell", + "exact_synonyms": [ + "T1 B lymphocyte", + "T1 B-cell", + "T1 B-lymphocyte", + "transitional stage 1 B cell" + ] + }, + { + "cl_id": "CL:0000959", + "label": "T2 B cell", + "exact_synonyms": [ + "T2 B lymphocyte", + "T2 B-cell", + "T2 B-lymphocyte", + "transitional stage 2 B cell" + ] + }, + { + "cl_id": "CL:0000960", + "label": "T3 B cell", + "exact_synonyms": [ + "An1 B cell", + "T3 B lymphocyte", + "T3 B-cell", + "T3 B-lymphocyte", + "transitional stage 3 B cell" + ] + }, + { + "cl_id": "CL:0000961", + "label": "Bm1 B cell", + "exact_synonyms": [ + "Bm1 B lymphocyte", + "Bm1 B-cell", + "Bm1 B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000962", + "label": "Bm2 B cell", + "exact_synonyms": [ + "Bm2 B lymphocyte", + "Bm2 B-cell", + "Bm2 B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000963", + "label": "Bm3-delta B cell", + "exact_synonyms": [ + "Bm3-delta B lymphocyte", + "Bm3-delta B-cell", + "Bm3-delta B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000964", + "label": "Bm2' B cell", + "exact_synonyms": [ + "Bm2' B lymphocyte", + "Bm2' B-cell", + "Bm2-prime B cell", + "Bm2-prime B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000965", + "label": "Bm3 B cell", + "exact_synonyms": [ + "Bm3 B lymphocyte", + "Bm3 B-cell", + "Bm3 B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000966", + "label": "Bm4 B cell", + "exact_synonyms": [ + "Bm4 B lymphocyte", + "Bm4 B-cell", + "Bm4 B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000967", + "label": "Bm5 B cell", + "exact_synonyms": [ + "Bm5 B lymphocyte", + "Bm5 B-cell", + "Bm5 B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000968", + "label": "Be cell", + "exact_synonyms": [ + "B effector cell", + "effector B cell", + "effector B lymphocyte", + "effector B-cell", + "effector B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000969", + "label": "regulatory B cell", + "exact_synonyms": [ + "B(reg)", + "B10 cell", + "Breg", + "regulatory B lymphocyte", + "regulatory B-cell", + "regulatory B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000970", + "label": "unswitched memory B cell", + "exact_synonyms": [ + "non-class-switched memory B cell", + "unswitched memory B lymphocyte", + "unswitched memory B-cell", + "unswitched memory B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000971", + "label": "IgM memory B cell", + "exact_synonyms": [ + "IgM memory B lymphocyte", + "IgM memory B-cell", + "IgM memory B-lymphocyte", + "memory IgM B cell", + "memory IgM B lymphocyte", + "memory IgM B-cell", + "memory IgM B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000972", + "label": "class switched memory B cell", + "exact_synonyms": [ + "class switched memory B lymphocyte", + "class switched memory B-cell", + "class switched memory B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000973", + "label": "IgA memory B cell", + "exact_synonyms": [ + "IgA memory B lymphocyte", + "IgA memory B-cell", + "IgA memory B-lymphocyte", + "memory IgA B cell", + "memory IgA B lymphocyte", + "memory IgA B-cell", + "memory IgA B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000974", + "label": "long lived plasma cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000975", + "label": "short lived plasma cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000976", + "label": "IgA short lived plasma cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000977", + "label": "IgG short lived plasma cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000978", + "label": "IgM short lived plasma cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000979", + "label": "IgG memory B cell", + "exact_synonyms": [ + "IgG memory B lymphocyte", + "IgG memory B-cell", + "IgG memory B-lymphocyte", + "memory IgG B cell", + "memory IgG B lymphocyte", + "memory IgG B-cell", + "memory IgG B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000980", + "label": "plasmablast", + "exact_synonyms": [ + "CD27-positive, CD38-positive, CD20-negative B cell" + ] + }, + { + "cl_id": "CL:0000981", + "label": "double negative memory B cell", + "exact_synonyms": [ + "dn memory B cell", + "dn memory B lymphocyte", + "dn memory B-cell", + "dn memory B-lymphocyte", + "double negative memory B lymphocyte", + "double negative memory B-cell", + "double negative memory B-lymphocyte" + ] + }, + { + "cl_id": "CL:0000982", + "label": "IgG plasmablast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000983", + "label": "IgM plasmablast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000984", + "label": "IgA plasmablast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000985", + "label": "IgG plasma cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000986", + "label": "IgM plasma cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000987", + "label": "IgA plasma cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000988", + "label": "hematopoietic cell", + "exact_synonyms": [ + "haematopoietic cell", + "haemopoietic cell", + "hemopoietic cell" + ] + }, + { + "cl_id": "CL:0000989", + "label": "CD11c-low plasmacytoid dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000990", + "label": "conventional dendritic cell", + "exact_synonyms": [ + "DC1", + "cDC", + "dendritic reticular cell", + "type 1 DC" + ] + }, + { + "cl_id": "CL:0000991", + "label": "CD11c-negative plasmacytoid dendritic cell", + "exact_synonyms": [ + "CD303-positive dendritic cell" + ] + }, + { + "cl_id": "CL:0000992", + "label": "immature CD11c-low plasmacytoid dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000993", + "label": "mature CD11c-low plasmacytoid dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000994", + "label": "immature CD11c-negative plasmacytoid dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000995", + "label": "CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000996", + "label": "mature CD11c-negative plasmacytoid dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000997", + "label": "immature CD8-alpha-negative CD11b-positive dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0000998", + "label": "CD8-alpha-negative CD11b-negative dendritic cell", + "exact_synonyms": [ + "DC.8-4-11b-", + "triple negative dendritic cell" + ] + }, + { + "cl_id": "CL:0000999", + "label": "CD4-positive CD11b-positive dendritic cell", + "exact_synonyms": [ + "DC.4+" + ] + }, + { + "cl_id": "CL:0001000", + "label": "CD8-alpha-positive CD11b-negative dendritic cell", + "exact_synonyms": [ + "DC.8+" + ] + }, + { + "cl_id": "CL:0001001", + "label": "immature CD8-alpha-negative CD11b-negative dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001002", + "label": "mature CD8-alpha-negative CD11b-negative dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001003", + "label": "mature CD8-alpha-negative CD11b-positive dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001004", + "label": "immature CD8-alpha-positive CD11b-negative dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001005", + "label": "mature CD8-alpha-positive CD11b-negative dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001006", + "label": "dermal dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001007", + "label": "interstitial dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001008", + "label": "Kit and Sca1-positive hematopoietic stem cell", + "exact_synonyms": [ + "LSK stem cell", + "Sca1-positive hematopoietic stem cell" + ] + }, + { + "cl_id": "CL:0001009", + "label": "immature dermal dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001010", + "label": "mature dermal dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001011", + "label": "immature interstitial dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001012", + "label": "CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001013", + "label": "mature interstitial dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001014", + "label": "CD1a-positive Langerhans cell", + "exact_synonyms": [ + "CD1a-LC" + ] + }, + { + "cl_id": "CL:0001015", + "label": "CD8-alpha-low Langerhans cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001016", + "label": "immature CD1a-positive Langerhans cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001017", + "label": "mature CD1a-positive Langerhans cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001018", + "label": "immature CD8-alpha-low Langerhans cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001019", + "label": "CD115-positive monocyte OR common dendritic progenitor", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001020", + "label": "mature CD8-alpha-low Langerhans cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001021", + "label": "CD34-positive, CD38-positive common lymphoid progenitor", + "exact_synonyms": [ + "CD10-positive common lymphocyte precursor", + "CD10-positive common lymphocyte progenitor", + "CD10-positive common lymphoid precursor" + ] + }, + { + "cl_id": "CL:0001022", + "label": "CD115-positive monocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001023", + "label": "Kit-positive, CD34-positive common myeloid progenitor", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001024", + "label": "CD34-positive, CD38-negative hematopoietic stem cell", + "exact_synonyms": [ + "CD133-positive hematopoietic stem cell" + ] + }, + { + "cl_id": "CL:0001025", + "label": "Kit-positive, Sca1-positive common lymphoid progenitor", + "exact_synonyms": [ + "CD217-positive common lymphocyte precursor", + "CD217-positive common lymphocyte progenitor", + "CD217-positive common lymphoid precursor" + ] + }, + { + "cl_id": "CL:0001026", + "label": "CD34-positive, CD38-positive common myeloid progenitor", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001027", + "label": "CD7-negative lymphoid progenitor cell", + "exact_synonyms": [ + "CD7-negative lymphoid precursor" + ] + }, + { + "cl_id": "CL:0001028", + "label": "CD7-positive lymphoid progenitor cell", + "exact_synonyms": [ + "CD7-positive lymphoid precursor" + ] + }, + { + "cl_id": "CL:0001029", + "label": "common dendritic progenitor", + "exact_synonyms": [ + "CDP", + "common dendritic precursor", + "pro-DCs" + ] + }, + { + "cl_id": "CL:0001030", + "label": "CD117-positive common myeloid progenitor OR CD217-positive common lymphoid progenitor", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001031", + "label": "cerebellar granule cell", + "exact_synonyms": [ + "granule cell of the cerebellum" + ] + }, + { + "cl_id": "CL:0001032", + "label": "cortical granule cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001033", + "label": "hippocampal granule cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001034", + "label": "cell in vitro", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001035", + "label": "bone cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001039", + "label": "terminally differentiated osteoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001040", + "label": "non-terminally differentiated osteoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001041", + "label": "CD8-positive, CXCR3-positive, alpha-beta regulatory T cell", + "exact_synonyms": [ + "CD8+CXCR3+ T cell", + "CD8+CXCR3+ T lymphocyte", + "CD8+CXCR3+ T(reg)", + "CD8+CXCR3+ T-cell", + "CD8+CXCR3+ Treg", + "CD8-positive, CXCR3-positive, T(reg)", + "CD8-positive, CXCR3-positive, Treg", + "CD8-positive, CXCR3-positive, alpha-beta regulatory T lymphocyte", + "CD8-positive, CXCR3-positive, alpha-beta regulatory T-cell", + "CD8-positive, CXCR3-positive, alpha-beta regulatory T-lymphocyte" + ] + }, + { + "cl_id": "CL:0001042", + "label": "T-helper 22 cell", + "exact_synonyms": [ + "T(H)-22 cell", + "Th22 T cell", + "Th22 T lymphocyte", + "Th22 T-cell", + "Th22 T-lymphocyte", + "Th22 cell", + "helper T cell type 22" + ] + }, + { + "cl_id": "CL:0001043", + "label": "activated CD4-positive, alpha-beta T cell, human", + "exact_synonyms": [ + "activated CD4-positive, alpha-beta T lymphocyte, human", + "activated CD4-positive, alpha-beta T-cell, human", + "activated CD4-positive, alpha-beta T-lymphocyte, human" + ] + }, + { + "cl_id": "CL:0001044", + "label": "effector CD4-positive, alpha-beta T cell", + "exact_synonyms": [ + "effector CD4-positive, alpha-beta T lymphocyte", + "effector CD4-positive, alpha-beta T-cell", + "effector CD4-positive, alpha-beta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0001045", + "label": "naive CCR4-positive regulatory T cell", + "exact_synonyms": [ + "naive CCR4+ Treg", + "naive CCR4-positive regulatory T lymphocyte", + "naive CCR4-positive regulatory T-cell", + "naive CCR4-positive regulatory T-lymphocyte" + ] + }, + { + "cl_id": "CL:0001046", + "label": "memory CCR4-positive regulatory T cell", + "exact_synonyms": [ + "memory CCR4+ Treg", + "memory CCR4-positive regulatory T lymphocyte", + "memory CCR4-positive regulatory T-cell", + "memory CCR4-positive regulatory T-lymphocyte" + ] + }, + { + "cl_id": "CL:0001047", + "label": "CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell", + "exact_synonyms": [ + "CCR+ Treg", + "CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T lymphocyte", + "CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T-cell", + "CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T-lymphocyte" + ] + }, + { + "cl_id": "CL:0001048", + "label": "activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell, human", + "exact_synonyms": [ + "activated CCR4+ Treg", + "activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T lymphocyte", + "activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T-cell", + "activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T-lymphocyte" + ] + }, + { + "cl_id": "CL:0001049", + "label": "activated CD8-positive, alpha-beta T cell, human", + "exact_synonyms": [ + "activated CD8-positive, alpha-beta T lymphocyte, human", + "activated CD8-positive, alpha-beta T-cell, human", + "activated CD8-positive, alpha-beta T-lymphocyte, human" + ] + }, + { + "cl_id": "CL:0001050", + "label": "effector CD8-positive, alpha-beta T cell", + "exact_synonyms": [ + "effector CD8-positive, alpha-beta T lymphocyte", + "effector CD8-positive, alpha-beta T-cell", + "effector CD8-positive, alpha-beta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0001051", + "label": "CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell", + "exact_synonyms": [ + "CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T lymphocyte", + "CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T-cell", + "CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0001052", + "label": "CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell", + "exact_synonyms": [ + "CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T lymphocyte", + "CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T-cell", + "CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T-lymphocyte" + ] + }, + { + "cl_id": "CL:0001053", + "label": "IgD-negative memory B cell", + "exact_synonyms": [ + "IgD- memory B cell" + ] + }, + { + "cl_id": "CL:0001054", + "label": "CD14-positive monocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001055", + "label": "CD14-positive, CD16-low monocyte", + "exact_synonyms": [ + "intermediate monocyte, human" + ] + }, + { + "cl_id": "CL:0001056", + "label": "dendritic cell, human", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001057", + "label": "myeloid dendritic cell, human", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001058", + "label": "plasmacytoid dendritic cell, human", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001059", + "label": "common myeloid progenitor, CD34-positive", + "exact_synonyms": [ + "common myeloid precursor, CD34-positive" + ] + }, + { + "cl_id": "CL:0001060", + "label": "hematopoietic oligopotent progenitor cell, lineage-negative", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001061", + "label": "abnormal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001062", + "label": "effector memory CD8-positive, alpha-beta T cell, terminally differentiated", + "exact_synonyms": [ + "CD8+ TEMRA", + "CD8-positive TEMRA" + ] + }, + { + "cl_id": "CL:0001063", + "label": "neoplastic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001064", + "label": "malignant cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001065", + "label": "innate lymphoid cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001066", + "label": "erythroid progenitor cell, mammalian", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001067", + "label": "group 1 innate lymphoid cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001068", + "label": "ILC1", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001069", + "label": "group 2 innate lymphoid cell", + "exact_synonyms": [ + "ILC2", + "natural helper cell", + "nuocyte" + ] + }, + { + "cl_id": "CL:0001070", + "label": "beige adipocyte", + "exact_synonyms": [ + "beige brown adipocyte", + "beige fat cell", + "beige/brite adipocyte", + "brite adipocyte", + "brite cell", + "brite fat cell" + ] + }, + { + "cl_id": "CL:0001071", + "label": "group 3 innate lymphoid cell", + "exact_synonyms": [ + "ILC3" + ] + }, + { + "cl_id": "CL:0001072", + "label": "CD34-negative, CD117-positive innate lymphoid cell, human", + "exact_synonyms": [ + "CD34-negative, CD117-positive ILC", + "CD34-negative, CD117-positive ILCP", + "CD34-negative, CD117-positive innate lymphoid cell precusor" + ] + }, + { + "cl_id": "CL:0001073", + "label": "CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human", + "exact_synonyms": [ + "CD34-negative, CD56-positive, CD117-positive ILC", + "CD34-negative, CD56-positive, CD117-positive ILCP", + "CD34-negative, CD56-positive, CD117-positive innate lymphoid cell precursor" + ] + }, + { + "cl_id": "CL:0001074", + "label": "CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human", + "exact_synonyms": [ + "CD34-positive, CD56-positive, CD117-positive CILP" + ] + }, + { + "cl_id": "CL:0001075", + "label": "KLRG1-positive innate lymphoid cell, human", + "exact_synonyms": [ + "KLRG1-positive ILC" + ] + }, + { + "cl_id": "CL:0001076", + "label": "NKp46-positive innate lymphoid cell, human", + "exact_synonyms": [ + "NKp46-positive ILC" + ] + }, + { + "cl_id": "CL:0001077", + "label": "ILC1, human", + "exact_synonyms": [ + "innate lymphoid cell 1, human" + ] + }, + { + "cl_id": "CL:0001078", + "label": "group 3 innate lymphoid cell, human", + "exact_synonyms": [ + "ILC3, human" + ] + }, + { + "cl_id": "CL:0001079", + "label": "NKp44-positive group 3 innate lymphoid cell, human", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001080", + "label": "NKp44-negative group 3 innate lymphoid cell, human", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001081", + "label": "group 2 innate lymphoid cell, human", + "exact_synonyms": [ + "ILC2, human" + ] + }, + { + "cl_id": "CL:0001082", + "label": "immature innate lymphoid cell", + "exact_synonyms": [ + "immature ILC" + ] + }, + { + "cl_id": "CL:0001087", + "label": "effector memory CD4-positive, alpha-beta T cell, terminally differentiated", + "exact_synonyms": [ + "CD4+ TEMRA", + "CD4-positive TEMRA" + ] + }, + { + "cl_id": "CL:0001200", + "label": "lymphocyte of B lineage, CD19-positive", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0001201", + "label": "B cell, CD19-positive", + "exact_synonyms": [ + "B lymphocyte, CD19-positive", + "B-cell, CD19-positive", + "B-lymphocyte, CD19-positive", + "CD19+ B cell", + "CD19-positive B cell" + ] + }, + { + "cl_id": "CL:0001202", + "label": "CD86-positive plasmablast", + "exact_synonyms": [ + "CD86+ plasmablast" + ] + }, + { + "cl_id": "CL:0001203", + "label": "CD8-positive, alpha-beta memory T cell, CD45RO-positive", + "exact_synonyms": [ + "CD8-positive, alpha-beta memory T lymphocyte, CD45RO-positive", + "CD8-positive, alpha-beta memory T-cell, CD45RO-positive", + "CD8-positive, alpha-beta memory T-lymphocyte, CD45RO-positive" + ] + }, + { + "cl_id": "CL:0001204", + "label": "CD4-positive, alpha-beta memory T cell, CD45RO-positive", + "exact_synonyms": [ + "CD4-positive, alpha-beta memory T lymphocyte, CD45RO-positive", + "CD4-positive, alpha-beta memory T-cell, CD45RO-positive", + "CD4-positive, alpha-beta memory T-lymphocyte, CD45RO-positive" + ] + }, + { + "cl_id": "CL:0001658", + "label": "visual pigment cell (sensu Nematoda and Protostomia)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002000", + "label": "Kit-positive erythroid progenitor cell", + "exact_synonyms": [ + "c- Kit-positive erythroid progenitor cell" + ] + }, + { + "cl_id": "CL:0002001", + "label": "CD34-positive, CD38-positive granulocyte monocyte progenitor", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002002", + "label": "Kit-positive granulocyte monocyte progenitor", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002003", + "label": "CD34-positive, GlyA-negative erythroid progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002004", + "label": "CD34-negative, GlyA-negative proerythroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002005", + "label": "CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002006", + "label": "Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002007", + "label": "Kit-low, CD34-positive eosinophil progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002008", + "label": "CD34-positive, CD38-positive eosinophil progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002009", + "label": "macrophage dendritic cell progenitor", + "exact_synonyms": [ + "MDP" + ] + }, + { + "cl_id": "CL:0002010", + "label": "pre-conventional dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002011", + "label": "Kit-positive macrophage dendritic cell progenitor", + "exact_synonyms": [ + "murine MDP" + ] + }, + { + "cl_id": "CL:0002012", + "label": "Kit-low proerythroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002013", + "label": "GlyA-positive basophilic erythroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002014", + "label": "Kit-negative, Ly-76 high basophilic erythroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002015", + "label": "Kit-negative, Ly-76 high polychromatophilic erythroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002016", + "label": "CD71-low, GlyA-positive polychromatic erythroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002017", + "label": "Kit-negative, Ly-76 high orthochromatophilic erythroblasts", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002018", + "label": "CD71-negative, GlyA-positive orthochromatic erythroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002019", + "label": "Ly-76 high reticulocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002020", + "label": "GlyA-positive reticulocytes", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002021", + "label": "GlyA-positive erythrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002022", + "label": "Ly-76 high positive erythrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002023", + "label": "CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002024", + "label": "Kit-positive megakaryocyte progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002025", + "label": "CD34-positive, CD41-positive, CD42-negative megakaryocyte progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002026", + "label": "CD34-negative, CD41-positive, CD42-positive megakaryocyte cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002027", + "label": "CD9-positive, CD41-positive megakaryocyte cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002028", + "label": "basophil mast progenitor cell", + "exact_synonyms": [ + "BMCP" + ] + }, + { + "cl_id": "CL:0002029", + "label": "Fc-epsilon RIalpha-low mast cell progenitor", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002030", + "label": "Fc-epsilon RIalpha-high basophil progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002031", + "label": "hematopoietic lineage restricted progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002032", + "label": "hematopoietic oligopotent progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002033", + "label": "short term hematopoietic stem cell", + "exact_synonyms": [ + "ST stem cell", + "ST-HSC" + ] + }, + { + "cl_id": "CL:0002034", + "label": "long term hematopoietic stem cell", + "exact_synonyms": [ + "LT stem cell", + "LT-HSC" + ] + }, + { + "cl_id": "CL:0002035", + "label": "Slamf1-negative multipotent progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002036", + "label": "Slamf1-positive multipotent progenitor cell", + "exact_synonyms": [ + "KSL cell" + ] + }, + { + "cl_id": "CL:0002037", + "label": "CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell", + "exact_synonyms": [ + "memory alpha beta IEL" + ] + }, + { + "cl_id": "CL:0002038", + "label": "T follicular helper cell", + "exact_synonyms": [ + "T(FH)", + "Tfh" + ] + }, + { + "cl_id": "CL:0002039", + "label": "immature NK T cell stage I, mouse", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002040", + "label": "immature NK T cell stage II, mouse", + "exact_synonyms": [ + "NKT.44-NK1.1-.Th" + ] + }, + { + "cl_id": "CL:0002041", + "label": "immature NK T cell stage III, mouse", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002042", + "label": "immature NK T cell stage IV, mouse", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002043", + "label": "CD34-positive, CD38-negative multipotent progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002044", + "label": "Kit-positive, integrin beta7-high basophil mast progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002045", + "label": "fraction A pre-pro B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002046", + "label": "early pro-B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002047", + "label": "fraction B precursor B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002048", + "label": "late pro-B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002049", + "label": "fraction C precursor B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002050", + "label": "fraction C' precursor B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002051", + "label": "CD38-high pre-BCR positive cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002052", + "label": "fraction D precursor B cell", + "exact_synonyms": [ + "fraction D pre-B cell" + ] + }, + { + "cl_id": "CL:0002053", + "label": "CD22-positive, CD38-low small pre-B cell", + "exact_synonyms": [ + "small pre-B cell" + ] + }, + { + "cl_id": "CL:0002054", + "label": "fraction E immature B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002055", + "label": "CD38-negative immature B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002056", + "label": "fraction F mature B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002057", + "label": "CD14-positive, CD16-negative classical monocyte", + "exact_synonyms": [ + "CD16- monocyte", + "CD16-negative monocyte" + ] + }, + { + "cl_id": "CL:0002058", + "label": "Gr1-low non-classical monocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002059", + "label": "CD8-alpha-positive thymic conventional dendritic cell", + "exact_synonyms": [ + "CD8alpha-alpha-positive thymic conventional dendritic cell", + "DC.8+.Th" + ] + }, + { + "cl_id": "CL:0002060", + "label": "melanophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002061", + "label": "T-helper 9 cell", + "exact_synonyms": [ + "T helper cells type 9", + "T(H)-9 cell", + "Th9" + ] + }, + { + "cl_id": "CL:0002062", + "label": "pulmonary alveolar type 1 cell", + "exact_synonyms": [ + "lung type 1 cells", + "membranous pneumocytes", + "pulmonary alveolar type I cell", + "small alveolar cells", + "squamous alveolar cell", + "squamous alveolar lining cell", + "type 1 alveolar epithelial cells", + "type 1 pneumocyte", + "type I alveolar cells", + "type I alveolar epithelial cells", + "type I pneumocyte" + ] + }, + { + "cl_id": "CL:0002063", + "label": "pulmonary alveolar type 2 cell", + "exact_synonyms": [ + "cuboidal type II cell", + "granular pneumocyte", + "great alveolar cell", + "lung type 2 cell", + "type 2 alveolar epithelial cell", + "type 2 alveolocyte", + "type 2 pneumocyte", + "type II alveolar cell", + "type II alveolar epithelial cell", + "type II alveolocyte", + "type II pneumocyte" + ] + }, + { + "cl_id": "CL:0002064", + "label": "pancreatic acinar cell", + "exact_synonyms": [ + "acinar cell of pancreas" + ] + }, + { + "cl_id": "CL:0002066", + "label": "Feyrter cell", + "exact_synonyms": [ + "Kultschitzky cell of bronchiole", + "bronchiolar Kulchitsky cell", + "respiratory enterochromaffin cell" + ] + }, + { + "cl_id": "CL:0002067", + "label": "type A enteroendocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002068", + "label": "Purkinje myocyte", + "exact_synonyms": [ + "Purkinje cell fiber", + "Purkinje muscle cell", + "myocytus conducens cardiacus" + ] + }, + { + "cl_id": "CL:0002069", + "label": "type II vestibular sensory cell", + "exact_synonyms": [ + "type 2 vestibular hair cell", + "type 2 vestibular sensory cell", + "type II hair cell" + ] + }, + { + "cl_id": "CL:0002070", + "label": "type I vestibular sensory cell", + "exact_synonyms": [ + "type 1 vestibular hair cell", + "type 1 vestibular sensory cell", + "type I hair cell" + ] + }, + { + "cl_id": "CL:0002071", + "label": "enterocyte of epithelium of large intestine", + "exact_synonyms": [ + "columnar cell of the colon", + "vacuolar absorptive cell" + ] + }, + { + "cl_id": "CL:0002072", + "label": "nodal myocyte", + "exact_synonyms": [ + "P cell", + "cardiac pacemaker cell", + "myocytus nodalis" + ] + }, + { + "cl_id": "CL:0002073", + "label": "transitional myocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002074", + "label": "myocardial endocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002075", + "label": "brush cell of tracheobronchial tree", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002076", + "label": "endo-epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002077", + "label": "ecto-epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002078", + "label": "meso-epithelial cell", + "exact_synonyms": [ + "epithelial mesenchymal cell" + ] + }, + { + "cl_id": "CL:0002079", + "label": "pancreatic ductal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002080", + "label": "pancreatic centro-acinar cell", + "exact_synonyms": [ + "centroacinar cell of Langerhans", + "pancreatic centroacinar cell" + ] + }, + { + "cl_id": "CL:0002081", + "label": "type II cell of carotid body", + "exact_synonyms": [ + "sheath cell of carotid body" + ] + }, + { + "cl_id": "CL:0002082", + "label": "type II cell of adrenal medulla", + "exact_synonyms": [ + "adrenal secreting cell of the adrenal medulla", + "adrenergic chromaffin cell", + "epiniphrine secreting cell of the adrenal medulla" + ] + }, + { + "cl_id": "CL:0002083", + "label": "type I cell of adrenal medulla", + "exact_synonyms": [ + "noradrenergic chromaffin cell" + ] + }, + { + "cl_id": "CL:0002084", + "label": "Boettcher cell", + "exact_synonyms": [ + "Boettcher's cell", + "Bottcher cell", + "Bottcher's cell" + ] + }, + { + "cl_id": "CL:0002085", + "label": "tanycyte", + "exact_synonyms": [ + "stretch cell" + ] + }, + { + "cl_id": "CL:0002086", + "label": "specialized cardiac myocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002087", + "label": "nongranular leukocyte", + "exact_synonyms": [ + "agranular leukocyte" + ] + }, + { + "cl_id": "CL:0002088", + "label": "interstitial cell of Cajal", + "exact_synonyms": [ + "ICC", + "intestinal pacemaker cell" + ] + }, + { + "cl_id": "CL:0002089", + "label": "group 2 innate lymphoid cell, mouse", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002090", + "label": "polar body", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002091", + "label": "primary polar body", + "exact_synonyms": [ + "first polar body", + "polocytus primarius" + ] + }, + { + "cl_id": "CL:0002092", + "label": "bone marrow cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002093", + "label": "secondary polar body", + "exact_synonyms": [ + "polocytus secundarius", + "second polar body" + ] + }, + { + "cl_id": "CL:0002094", + "label": "interstitial cell of ovary", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002095", + "label": "hilus cell of ovary", + "exact_synonyms": [ + "hilar cell of ovary" + ] + }, + { + "cl_id": "CL:0002096", + "label": "internodal tract myocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002097", + "label": "cortical cell of adrenal gland", + "exact_synonyms": [ + "adrenal cortex cell", + "adrenocortical cell" + ] + }, + { + "cl_id": "CL:0002098", + "label": "regular cardiac myocyte", + "exact_synonyms": [ + "regular cardiac muscle cell", + "regular cardiac muscle fiber" + ] + }, + { + "cl_id": "CL:0002099", + "label": "type I cell of adrenal cortex", + "exact_synonyms": [ + "epithelial cell of zona glomerulosa of adrenal gland" + ] + }, + { + "cl_id": "CL:0002100", + "label": "regular interventricular cardiac myocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002101", + "label": "CD38-positive naive B cell", + "exact_synonyms": [ + "CD38+ naive B cell", + "CD38+ naive B lymphocyte", + "CD38+ naive B-cell", + "CD38+ naive B-lymphocyte", + "CD38-positive naive B lymphocyte", + "CD38-positive naive B-cell", + "CD38-positive naive B-lymphocyte" + ] + }, + { + "cl_id": "CL:0002102", + "label": "CD38-negative naive B cell", + "exact_synonyms": [ + "CD38- naive B cell", + "CD38- naive B lymphocyte", + "CD38- naive B-cell", + "CD38- naive B-lymphocyte", + "CD38-negative naive B lymphocyte", + "CD38-negative naive B-cell", + "CD38-negative naive B-lymphocyte" + ] + }, + { + "cl_id": "CL:0002103", + "label": "IgG-positive double negative memory B cell", + "exact_synonyms": [ + "IgG+ dn memory B cell", + "IgG+ dn memory B lymphocyte", + "IgG+ dn memory B-cell", + "IgG+ dn memory B-lymphocyte", + "IgG+ double negative memory B cell", + "IgG+ double negative memory B lymphocyte", + "IgG+ double negative memory B-cell", + "IgG+ double negative memory B-lymphocyte", + "IgG-positive dn memory B cell", + "IgG-positive dn memory B lymphocyte", + "IgG-positive dn memory B-cell", + "IgG-positive dn memory B-lymphocyte", + "IgG-positive double negative memory B lymphocyte", + "IgG-positive double negative memory B-cell", + "IgG-positive double negative memory B-lymphocyte" + ] + }, + { + "cl_id": "CL:0002104", + "label": "IgG-negative double negative memory B cell", + "exact_synonyms": [ + "IgG- dn memory B cell", + "IgG- dn memory B lymphocyte", + "IgG- dn memory B-cell", + "IgG- dn memory B-lymphocyte", + "IgG- double negative memory B cell", + "IgG- double negative memory B lymphocyte", + "IgG- double negative memory B-cell", + "IgG- double negative memory B-lymphocyte", + "IgG-negative dn memory B cell", + "IgG-negative dn memory B lymphocyte", + "IgG-negative dn memory B-cell", + "IgG-negative dn memory B-lymphocyte", + "IgG-negative double negative memory B lymphocyte", + "IgG-negative double negative memory B-cell", + "IgG-negative double negative memory B-lymphocyte" + ] + }, + { + "cl_id": "CL:0002105", + "label": "CD38-positive IgG memory B cell", + "exact_synonyms": [ + "CD38+ IgG memory B cell", + "CD38+ IgG memory B lymphocyte", + "CD38+ IgG memory B-cell", + "CD38+ IgG memory B-lymphocyte", + "CD38-positive IgG memory B lymphocyte", + "CD38-positive IgG memory B-cell", + "CD38-positive IgG memory B-lymphocyte" + ] + }, + { + "cl_id": "CL:0002106", + "label": "IgD-positive CD38-positive IgG memory B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002107", + "label": "IgD-negative CD38-positive IgG memory B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002108", + "label": "CD38-negative IgG memory B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002109", + "label": "B220-positive CD38-positive naive B cell", + "exact_synonyms": [ + "B220+CD38+ naive B cell", + "B220+CD38+ naive B lymphocyte", + "B220+CD38+ naive B-cell", + "B220+CD38+ naive B-lymphocyte", + "B220-positive CD38-positive naive B lymphocyte", + "B220-positive CD38-positive naive B-cell", + "B220-positive CD38-positive naive B-lymphocyte", + "CD38+B220+ naive B cell", + "CD38+B220+ naive B lymphocyte", + "CD38+B220+ naive B-cell", + "CD38+B220+ naive B-lymphocyte" + ] + }, + { + "cl_id": "CL:0002110", + "label": "B220-low CD38-positive naive B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002111", + "label": "CD38-negative unswitched memory B cell", + "exact_synonyms": [ + "CD38- unswitched memory B cell", + "CD38- unswitched memory B lymphocyte", + "CD38- unswitched memory B-cell", + "CD38- unswitched memory B-lymphocyte", + "CD38-negative unswitched memory B lymphocyte", + "CD38-negative unswitched memory B-cell", + "CD38-negative unswitched memory B-lymphocyte" + ] + }, + { + "cl_id": "CL:0002112", + "label": "B220-positive CD38-negative unswitched memory B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002113", + "label": "B220-low CD38-negative unswitched memory B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002114", + "label": "CD38-positive unswitched memory B cell", + "exact_synonyms": [ + "CD38+ unswitched memory B cell", + "CD38+ unswitched memory B lymphocyte", + "CD38+ unswitched memory B-cell", + "CD38+ unswitched memory B-lymphocyte", + "CD38-positive unswitched memory B lymphocyte", + "CD38-positive unswitched memory B-cell", + "CD38-positive unswitched memory B-lymphocyte" + ] + }, + { + "cl_id": "CL:0002115", + "label": "B220-positive CD38-positive unswitched memory B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002116", + "label": "B220-low CD38-positive unswitched memory B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002117", + "label": "IgG-negative class switched memory B cell", + "exact_synonyms": [ + "IgG- class switched memory B cell", + "IgG- class switched memory B lymphocyte", + "IgG- class switched memory B-cell", + "IgG- class switched memory B-lymphocyte", + "IgG-negative class switched memory B lymphocyte", + "IgG-negative class switched memory B-cell", + "IgG-negative class switched memory B-lymphocyte" + ] + }, + { + "cl_id": "CL:0002118", + "label": "CD38-negative IgG-negative class switched memory B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002119", + "label": "CD38-positive IgG-negative class switched memory B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002120", + "label": "CD24-positive CD38-negative IgG-negative class switched memory B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002121", + "label": "CD24-negative CD38-negative IgG-negative class switched memory B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002122", + "label": "B220-positive CD38-positive IgG-negative class switched memory B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002123", + "label": "B220-low CD38-positive IgG-negative class switched memory B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002124", + "label": "CD27-positive gamma-delta T cell", + "exact_synonyms": [ + "gammadelta27-positive", + "gd27-positive" + ] + }, + { + "cl_id": "CL:0002125", + "label": "CD27-negative gamma-delta T cell", + "exact_synonyms": [ + "gammadelta-17 cells" + ] + }, + { + "cl_id": "CL:0002126", + "label": "CD25-positive, CD27-positive immature gamma-delta T cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002127", + "label": "innate effector T cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002128", + "label": "Tc17 cell", + "exact_synonyms": [ + "CD8-positive Th17 cell", + "Tc17 CD8+ T cell", + "Tc17 T cell", + "Tc17 T lymphocyte", + "Tc17 T-cell", + "Tc17 T-lymphocyte", + "Th17 CD8-positive T cell", + "Th17 non-TFH CD8-positive T cell" + ] + }, + { + "cl_id": "CL:0002129", + "label": "regular atrial cardiac myocyte", + "exact_synonyms": [ + "atrial cardiac muscle cell", + "atrial myocyte", + "regular atrial cardiac muscle fiber", + "regular cardiac muscle cell of atrium" + ] + }, + { + "cl_id": "CL:0002130", + "label": "regular interatrial cardiac myocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002131", + "label": "regular ventricular cardiac myocyte", + "exact_synonyms": [ + "regular cardiac muscle cell of ventricle", + "regular ventricular cardiac muscle fiber", + "ventricular myocyte" + ] + }, + { + "cl_id": "CL:0002132", + "label": "stromal cell of ovary", + "exact_synonyms": [ + "ovarian stromal cell" + ] + }, + { + "cl_id": "CL:0002133", + "label": "stromal cell of ovarian cortex", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002134", + "label": "stromal cell of ovarian medulla", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002135", + "label": "nonkeratinized cell of epidermis", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002136", + "label": "type II cell of adrenal cortex", + "exact_synonyms": [ + "type II cortical cell of adrenal gland" + ] + }, + { + "cl_id": "CL:0002137", + "label": "type III cell of adrenal cortex", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002138", + "label": "endothelial cell of lymphatic vessel", + "exact_synonyms": [ + "LEC", + "lymphatic endothelial cell" + ] + }, + { + "cl_id": "CL:0002139", + "label": "endothelial cell of vascular tree", + "exact_synonyms": [ + "vascular endothelial cell" + ] + }, + { + "cl_id": "CL:0002140", + "label": "skin sebocyte", + "exact_synonyms": [ + "acinar cell of skin sebaceous gland" + ] + }, + { + "cl_id": "CL:0002141", + "label": "active chief cell of parathyroid gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002142", + "label": "dark cell of eccrine sweat gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002143", + "label": "dark chief cell of parathyroid gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002144", + "label": "capillary endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002145", + "label": "multiciliated columnar cell of tracheobronchial tree", + "exact_synonyms": [ + "ciliated columnar cell of tracheobronchial tree" + ] + }, + { + "cl_id": "CL:0002146", + "label": "clear cell of eccrine sweat gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002147", + "label": "clear chief cell of parathyroid gland", + "exact_synonyms": [ + "clear chief cell of parathyroid cell" + ] + }, + { + "cl_id": "CL:0002148", + "label": "dental pulp cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002149", + "label": "epithelial cell of uterus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002150", + "label": "epithelioid macrophage", + "exact_synonyms": [ + "epithelioid histocyte", + "epitheloid macrophage" + ] + }, + { + "cl_id": "CL:0002151", + "label": "late promyelocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002152", + "label": "columnar cell of endocervix", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002153", + "label": "corneocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002154", + "label": "early promyelocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002155", + "label": "echinocyte", + "exact_synonyms": [ + "burr cell" + ] + }, + { + "cl_id": "CL:0002157", + "label": "endosteal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002158", + "label": "external epithelial cell of tympanic membrane", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002159", + "label": "general ecto-epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002160", + "label": "basal external epithelial cell of tympanic membrane", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002161", + "label": "superficial external epithelial cell of tympanic membrane", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002162", + "label": "internal epithelial cell of tympanic membrane", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002163", + "label": "internal pillar cell of cochlea", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002164", + "label": "external pillar cell of cochlea", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002165", + "label": "phalangeal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002166", + "label": "epithelial cell of Malassez", + "exact_synonyms": [ + "epithelial cell rests of Malassez", + "epithelial debris of Malassez" + ] + }, + { + "cl_id": "CL:0002167", + "label": "olfactory epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002168", + "label": "border cell of cochlea", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002169", + "label": "basal cell of olfactory epithelium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002170", + "label": "keratinized cell of the oral mucosa", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002171", + "label": "globose cell of olfactory epithelium", + "exact_synonyms": [ + "blastema cell of olfactory epithelium" + ] + }, + { + "cl_id": "CL:0002172", + "label": "interdental cell of cochlea", + "exact_synonyms": [ + "interdental cell" + ] + }, + { + "cl_id": "CL:0002173", + "label": "extraglomerular mesangial cell", + "exact_synonyms": [ + "Goormaghtigh cell", + "polar cushion cells" + ] + }, + { + "cl_id": "CL:0002174", + "label": "follicular cell of ovary", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002175", + "label": "primary follicular cell of ovary", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002176", + "label": "secondary follicular cell of ovary", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002177", + "label": "folliculostellate cell of pars distalis of adenohypophysis", + "exact_synonyms": [ + "folliculostellate cell of pars anterior of adenohypophysis" + ] + }, + { + "cl_id": "CL:0002178", + "label": "epithelial cell of stomach", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002179", + "label": "foveolar cell of stomach", + "exact_synonyms": [ + "surface mucosal cell of stomach" + ] + }, + { + "cl_id": "CL:0002180", + "label": "mucous cell of stomach", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002181", + "label": "mucous neck cell of gastric gland", + "exact_synonyms": [ + "mucous neck cell" + ] + }, + { + "cl_id": "CL:0002183", + "label": "stem cell of gastric gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002184", + "label": "basal proper cell of olfactory epithelium", + "exact_synonyms": [ + "horizontal basal cells" + ] + }, + { + "cl_id": "CL:0002187", + "label": "basal cell of epidermis", + "exact_synonyms": [ + "epidermal basal cell", + "epidermal basal keratinocyte" + ] + }, + { + "cl_id": "CL:0002188", + "label": "glomerular endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002189", + "label": "granular cell of epidermis", + "exact_synonyms": [ + "granular keratinocyte" + ] + }, + { + "cl_id": "CL:0002190", + "label": "squamous cell of epidermis", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002191", + "label": "granulocytopoietic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002192", + "label": "metamyelocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002193", + "label": "myelocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002194", + "label": "monopoietic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002195", + "label": "hepatic stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002196", + "label": "hepatic oval stem cell", + "exact_synonyms": [ + "hepatic oval cell", + "hepatic progenitor cell", + "liver progenitor cell" + ] + }, + { + "cl_id": "CL:0002197", + "label": "inactive chief cell of parathyoid gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002198", + "label": "oncocyte", + "exact_synonyms": [ + "oxyphil" + ] + }, + { + "cl_id": "CL:0002199", + "label": "oxyphil cell of parathyroid gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002200", + "label": "oxyphil cell of thyroid", + "exact_synonyms": [ + "Askanazy cells", + "Hurthle cells" + ] + }, + { + "cl_id": "CL:0002201", + "label": "renal beta-intercalated cell", + "exact_synonyms": [ + "type B intercalated cell", + "type B-IC" + ] + }, + { + "cl_id": "CL:0002202", + "label": "epithelial cell of tracheobronchial tree", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002203", + "label": "tuft cell of large intestine", + "exact_synonyms": [ + "brush cell of epithelium proper of large intestine", + "brush cell of large intestine", + "tuft cell of epithelium of large intestine" + ] + }, + { + "cl_id": "CL:0002204", + "label": "tuft cell", + "exact_synonyms": [ + "brush cell", + "caveolated cell", + "fibrillovesicular cell", + "multivesicular cell", + "peculiar cell" + ] + }, + { + "cl_id": "CL:0002205", + "label": "brush cell of lobular bronchiole", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002206", + "label": "brush cell of terminal bronchiole", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002207", + "label": "brush cell of trachea", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002208", + "label": "brush cell of bronchus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002209", + "label": "intermediate epitheliocyte", + "exact_synonyms": [ + "undifferentiated columnar cell of tracheobronchial tree" + ] + }, + { + "cl_id": "CL:0002210", + "label": "red muscle cell", + "exact_synonyms": [ + "oxidative muscle fiber", + "red muscle fiber" + ] + }, + { + "cl_id": "CL:0002211", + "label": "type I muscle cell", + "exact_synonyms": [ + "slow twitch fiber", + "slow twitch muscle cell", + "slow twitch muscle fiber", + "slow-twitch muscle fiber", + "type 1 muscle cell", + "type 1 muscle fiber", + "type I muscle fiber" + ] + }, + { + "cl_id": "CL:0002212", + "label": "type II muscle cell", + "exact_synonyms": [ + "type 2 muscle cell", + "type 2 muscle fiber", + "type II muscle fiber" + ] + }, + { + "cl_id": "CL:0002213", + "label": "white muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002214", + "label": "type IIa muscle cell", + "exact_synonyms": [ + "fast twitch A", + "fatigue resistant fast twitch muscle cell", + "type 2a muscle cell", + "type 2a muscle fiber", + "type IIa muscle fiber" + ] + }, + { + "cl_id": "CL:0002215", + "label": "type IIb muscle cell", + "exact_synonyms": [ + "type 2b muscle cell", + "type 2b muscle fiber", + "type IIb muscle fiber" + ] + }, + { + "cl_id": "CL:0002216", + "label": "intermediate muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002217", + "label": "intermediate trophoblast cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002218", + "label": "immature dendritic epithelial T cell precursor", + "exact_synonyms": [ + "immature DEC precursor", + "immature DETC precursor" + ] + }, + { + "cl_id": "CL:0002219", + "label": "anchoring trophoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002220", + "label": "interstitial cell of pineal gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002221", + "label": "keratinized squamous cell of esophagus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002222", + "label": "vertebrate lens cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002223", + "label": "anterior lens cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002224", + "label": "lens epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002225", + "label": "secondary lens fiber", + "exact_synonyms": [ + "secondary lens fibre" + ] + }, + { + "cl_id": "CL:0002226", + "label": "non-nucleated secondary lens fiber", + "exact_synonyms": [ + "non-nucleated secondary lens fibre" + ] + }, + { + "cl_id": "CL:0002227", + "label": "nucleated secondary lens fiber", + "exact_synonyms": [ + "nucleated secondary lens fibre" + ] + }, + { + "cl_id": "CL:0002228", + "label": "primary lens fiber", + "exact_synonyms": [ + "primary lens fibre" + ] + }, + { + "cl_id": "CL:0002229", + "label": "light chief cell of parathyroid gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002231", + "label": "epithelial cell of prostate", + "exact_synonyms": [ + "prostate epithelial cell" + ] + }, + { + "cl_id": "CL:0002232", + "label": "epithelial cell of prostatic duct", + "exact_synonyms": [ + "ductal epithelial cell of prostate" + ] + }, + { + "cl_id": "CL:0002233", + "label": "epithelial cell of prostatic acinus", + "exact_synonyms": [ + "acinar epithelial cell of prostate" + ] + }, + { + "cl_id": "CL:0002234", + "label": "basal cell of prostatic acinus", + "exact_synonyms": [ + "basal epithelial cell of prostatic acinus" + ] + }, + { + "cl_id": "CL:0002235", + "label": "luminal cell of prostatic acinus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002236", + "label": "basal epithelial cell of prostatic duct", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002237", + "label": "luminal epithelial cell of prostatic duct", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002238", + "label": "male gonocyte", + "exact_synonyms": [ + "male primordial germ cell", + "testis primordial germ cell" + ] + }, + { + "cl_id": "CL:0002239", + "label": "ooblast", + "exact_synonyms": [ + "ovary primordial germ cell", + "ovigerm" + ] + }, + { + "cl_id": "CL:0002240", + "label": "marrow fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002241", + "label": "pulmonary interstitial fibroblast", + "exact_synonyms": [ + "pulmonary myofibroblast", + "pulmonary septal cell" + ] + }, + { + "cl_id": "CL:0002242", + "label": "nucleate cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002243", + "label": "smooth muscle cell of sphincter of pupil", + "exact_synonyms": [ + "smooth muscle fiber of sphincter of pupil" + ] + }, + { + "cl_id": "CL:0002244", + "label": "squamous cell of ectocervix", + "exact_synonyms": [ + "ectocervical squamous cell" + ] + }, + { + "cl_id": "CL:0002246", + "label": "peripheral blood stem cell", + "exact_synonyms": [ + "PBSC" + ] + }, + { + "cl_id": "CL:0002247", + "label": "pleural macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002248", + "label": "pluripotent stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002249", + "label": "primitive cardiac myocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002250", + "label": "intestinal crypt stem cell", + "exact_synonyms": [ + "stem cell of intestinal crypt of Lieberkuhn" + ] + }, + { + "cl_id": "CL:0002251", + "label": "epithelial cell of alimentary canal", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002252", + "label": "epithelial cell of esophagus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002253", + "label": "epithelial cell of large intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002254", + "label": "epithelial cell of small intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002255", + "label": "stromal cell of endometrium", + "exact_synonyms": [ + "endometrial stromal cell", + "endometrial stromal fibroblast" + ] + }, + { + "cl_id": "CL:0002256", + "label": "supporting cell of carotid body", + "exact_synonyms": [ + "carotid body sustentacular cell" + ] + }, + { + "cl_id": "CL:0002257", + "label": "epithelial cell of thyroid gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002258", + "label": "thyroid follicular cell", + "exact_synonyms": [ + "follicular cell of thyroid gland", + "principal cell of thyroid gland", + "thyroid gland follicular cell", + "thyroid hormone secreting cell" + ] + }, + { + "cl_id": "CL:0002259", + "label": "neuroepithelial stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002260", + "label": "epithelial cell of parathyroid gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002261", + "label": "endothelial cell of viscerocranial mucosa", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002262", + "label": "endothelial cell of sinusoid", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002263", + "label": "transitional cell of parathyroid gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002264", + "label": "type A cell of stomach", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002265", + "label": "type D cell of colon", + "exact_synonyms": [ + "colon D-cell", + "colonic delta cell", + "delta cell of colon" + ] + }, + { + "cl_id": "CL:0002266", + "label": "type D cell of small intestine", + "exact_synonyms": [ + "delta cell of small intestine", + "small intestine D-cell", + "small intestine delta cell" + ] + }, + { + "cl_id": "CL:0002267", + "label": "type D cell of stomach", + "exact_synonyms": [ + "delta cell of stomach", + "stomach D-cell", + "stomach delta cell" + ] + }, + { + "cl_id": "CL:0002268", + "label": "P/D1 enteroendocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002269", + "label": "vasoactive intestinal peptide secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002270", + "label": "type EC2 enteroendocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002271", + "label": "type EC1 enteroendocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002272", + "label": "motilin secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002273", + "label": "type ECL enteroendocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002274", + "label": "histamine secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002275", + "label": "pancreatic PP cell", + "exact_synonyms": [ + "PP cell of pancreatic islet", + "PP-cell of pancreatic islet", + "pancreatic polypeptide-secreting cell" + ] + }, + { + "cl_id": "CL:0002277", + "label": "type I enteroendocrine cell", + "exact_synonyms": [ + "CCK cell" + ] + }, + { + "cl_id": "CL:0002278", + "label": "GIP cell", + "exact_synonyms": [ + "type K enteroendocrine cell" + ] + }, + { + "cl_id": "CL:0002279", + "label": "type L enteroendocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002280", + "label": "type N enteroendocrine cell", + "exact_synonyms": [ + "N cell" + ] + }, + { + "cl_id": "CL:0002281", + "label": "type S enteroendocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002282", + "label": "type TG enteroendocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002283", + "label": "ecto-epithelial cell of viscerocranial mucosa", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002284", + "label": "type X enteroendocrine cell", + "exact_synonyms": [ + "A-like", + "X/A-like" + ] + }, + { + "cl_id": "CL:0002285", + "label": "type III taste bud cell", + "exact_synonyms": [ + "type 3 taste cell" + ] + }, + { + "cl_id": "CL:0002286", + "label": "type II taste cell", + "exact_synonyms": [ + "type 2 taste cell" + ] + }, + { + "cl_id": "CL:0002287", + "label": "type IV taste receptor cell", + "exact_synonyms": [ + "type 4 taste cell" + ] + }, + { + "cl_id": "CL:0002288", + "label": "type V taste receptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002289", + "label": "type I taste bud cell", + "exact_synonyms": [ + "dark tongue cell", + "type I taste cell", + "type taste 1 cell" + ] + }, + { + "cl_id": "CL:0002290", + "label": "Y chromosome-bearing sperm cell", + "exact_synonyms": [ + "Y bearing sperm", + "Y-bearing sperm" + ] + }, + { + "cl_id": "CL:0002291", + "label": "X chromosome-bearing sperm cell", + "exact_synonyms": [ + "X bearing sperm", + "X-bearing sperm" + ] + }, + { + "cl_id": "CL:0002292", + "label": "type I cell of carotid body", + "exact_synonyms": [ + "glomus cell" + ] + }, + { + "cl_id": "CL:0002293", + "label": "epithelial cell of thymus", + "exact_synonyms": [ + "epithelial cell of thymus gland", + "epithelial reticular cell", + "epithelial reticular cell of thymus", + "thymic epithelial cell" + ] + }, + { + "cl_id": "CL:0002294", + "label": "type-1 epithelial cell of thymus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002295", + "label": "type-6 epithelial cell of thymus", + "exact_synonyms": [ + "cystic thymic epithelial cells", + "large mTEC", + "large medullary thymic epithelial cells" + ] + }, + { + "cl_id": "CL:0002296", + "label": "type-4 epithelial cell of thymus", + "exact_synonyms": [ + "dark thymic epithelial cell" + ] + }, + { + "cl_id": "CL:0002297", + "label": "type-3 epithelial cell of thymus", + "exact_synonyms": [ + "intermediate thymic epithelial cell" + ] + }, + { + "cl_id": "CL:0002298", + "label": "type-5 epithelial cell of thymus", + "exact_synonyms": [ + "undifferentiated mTEC", + "undifferentiated medullary thymic epithelial cell", + "undifferentiated thymic epithelial cell" + ] + }, + { + "cl_id": "CL:0002299", + "label": "type-2 epithelial cell of thymus", + "exact_synonyms": [ + "pale thymic epithelial cell" + ] + }, + { + "cl_id": "CL:0002300", + "label": "type-7 epithelial cell of thymus", + "exact_synonyms": [ + "spindle shaped mTEC", + "spindle shaped medullary thymic epithelial cell" + ] + }, + { + "cl_id": "CL:0002301", + "label": "type B synovial cell", + "exact_synonyms": [ + "fibroblast-like synoviocyte", + "synovial fibroblast" + ] + }, + { + "cl_id": "CL:0002302", + "label": "type A synovial cell", + "exact_synonyms": [ + "type A synoviocyte" + ] + }, + { + "cl_id": "CL:0002303", + "label": "pigmented ciliary epithelial cell", + "exact_synonyms": [ + "PE cell" + ] + }, + { + "cl_id": "CL:0002304", + "label": "non-pigmented ciliary epithelial cell", + "exact_synonyms": [ + "NPE cell", + "nonpigmented ciliary epithelial cell" + ] + }, + { + "cl_id": "CL:0002305", + "label": "epithelial cell of distal tubule", + "exact_synonyms": [ + "kidney distal tubule epithelial cell" + ] + }, + { + "cl_id": "CL:0002306", + "label": "epithelial cell of proximal tubule", + "exact_synonyms": [ + "kidney proximal tubule epithelial cell" + ] + }, + { + "cl_id": "CL:0002307", + "label": "brush border cell of the proximal tubule", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002308", + "label": "epithelial cell of skin gland", + "exact_synonyms": [ + "epithelial cell of gland of skin" + ] + }, + { + "cl_id": "CL:0002309", + "label": "corticotroph", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002310", + "label": "mammosomatotroph", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002311", + "label": "mammotroph", + "exact_synonyms": [ + "epsilon-acidophil", + "lactotrope", + "lactotroph", + "lactotropic cell", + "mammotrope", + "mammotrophic cell", + "mammotropic cell" + ] + }, + { + "cl_id": "CL:0002312", + "label": "somatotroph", + "exact_synonyms": [ + "somatotrope", + "somatotropic cell", + "somatrophic cell" + ] + }, + { + "cl_id": "CL:0002313", + "label": "endocrine-paracrine cell of prostate gland", + "exact_synonyms": [ + "glandular cell of prostate", + "neuro-epithelial cell of prostate gland" + ] + }, + { + "cl_id": "CL:0002314", + "label": "external supporting cell of vestibular epithelium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002315", + "label": "supporting cell of cochlea", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002316", + "label": "supporting cell of vestibular epithelium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002317", + "label": "external limiting cell of vestibular epithelium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002318", + "label": "peripheral blood mesothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002319", + "label": "neural cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002320", + "label": "connective tissue cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002321", + "label": "embryonic cell (metazoa)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002322", + "label": "embryonic stem cell", + "exact_synonyms": [ + "ESC" + ] + }, + { + "cl_id": "CL:0002323", + "label": "amniocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002324", + "label": "basal-myoepithelial cell of mammary gland", + "exact_synonyms": [ + "myoepithelial cell of mammary gland" + ] + }, + { + "cl_id": "CL:0002325", + "label": "lactocyte", + "exact_synonyms": [ + "epithelial cell of lactiferous gland", + "lactaction-associated mammary epithelial cell", + "lactation-derived mammary cell", + "luminal cell of alveolus of lactiferous gland", + "mammary alveolar epithelial cell", + "mammary gland alveolar epithelial cell" + ] + }, + { + "cl_id": "CL:0002326", + "label": "luminal epithelial cell of mammary gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002327", + "label": "mammary gland epithelial cell", + "exact_synonyms": [ + "breast epithelial cell", + "mammary epithelial cell" + ] + }, + { + "cl_id": "CL:0002328", + "label": "bronchial epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002329", + "label": "basal epithelial cell of tracheobronchial tree", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002330", + "label": "undifferentiated cell of bronchus epithelium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002332", + "label": "multiciliated epithelial cell of the bronchus", + "exact_synonyms": [ + "ciliated epithelial cell of the bronchus" + ] + }, + { + "cl_id": "CL:0002333", + "label": "neural crest derived adipocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002334", + "label": "preadipocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002335", + "label": "brown preadipocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002336", + "label": "buccal mucosa cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002337", + "label": "keratinocyte stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002338", + "label": "CD56-positive, CD161-positive immature natural killer cell, human", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002339", + "label": "prostate stem cell", + "exact_synonyms": [ + "CD133-positive prostate epithelial cell" + ] + }, + { + "cl_id": "CL:0002340", + "label": "luminal cell of prostate epithelium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002341", + "label": "basal cell of prostate epithelium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002342", + "label": "circulating endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002343", + "label": "decidual natural killer cell, human", + "exact_synonyms": [ + "dNK cell", + "decidual NK cell" + ] + }, + { + "cl_id": "CL:0002344", + "label": "CD56-negative, CD161-positive immature natural killer cell, human", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002345", + "label": "CD27-low, CD11b-low immature natural killer cell, mouse", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002346", + "label": "Dx5-negative, NK1.1-positive immature natural killer cell, mouse", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002347", + "label": "CD27-high, CD11b-high natural killer cell, mouse", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002348", + "label": "CD27-low, CD11b-high natural killer cell, mouse", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002349", + "label": "CD27-high, CD11b-low natural killer cell, mouse", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002350", + "label": "endocardial cell", + "exact_synonyms": [ + "endocardial endothelial cell", + "endothelial cell of endocardium" + ] + }, + { + "cl_id": "CL:0002351", + "label": "progenitor cell of endocrine pancreas", + "exact_synonyms": [ + "pancreatic endocrine progenitor", + "pancreatic islet progenitor cell" + ] + }, + { + "cl_id": "CL:0002352", + "label": "gestational hematopoietic stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002353", + "label": "fetal liver hematopoietic progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002354", + "label": "yolk sac hematopoietic stem cell", + "exact_synonyms": [ + "hemangioblast precursor" + ] + }, + { + "cl_id": "CL:0002355", + "label": "primitive red blood cell", + "exact_synonyms": [ + "primitive erythroblast", + "primitive erythrocyte", + "primitive erythroid cell" + ] + }, + { + "cl_id": "CL:0002356", + "label": "primitive reticulocyte", + "exact_synonyms": [ + "megalocyte" + ] + }, + { + "cl_id": "CL:0002357", + "label": "fetal derived definitive erythrocyte", + "exact_synonyms": [ + "macrocyte" + ] + }, + { + "cl_id": "CL:0002358", + "label": "pyrenocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002359", + "label": "placental hematopoietic stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002360", + "label": "AGM hematopoietic stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002361", + "label": "primitive erythroid progenitor", + "exact_synonyms": [ + "EryP-CFC", + "inner blood island hemangioblast" + ] + }, + { + "cl_id": "CL:0002362", + "label": "cerebellar granule cell precursor", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002363", + "label": "keratocyte", + "exact_synonyms": [ + "corneal fibroblast", + "corneal keratocyte" + ] + }, + { + "cl_id": "CL:0002364", + "label": "cortical thymic epithelial cell", + "exact_synonyms": [ + "cTEC" + ] + }, + { + "cl_id": "CL:0002365", + "label": "medullary thymic epithelial cell", + "exact_synonyms": [ + "mTEC" + ] + }, + { + "cl_id": "CL:0002366", + "label": "myometrial cell", + "exact_synonyms": [ + "myometrium smooth muscle cell" + ] + }, + { + "cl_id": "CL:0002367", + "label": "trabecular meshwork cell", + "exact_synonyms": [ + "trabeculocyte" + ] + }, + { + "cl_id": "CL:0002368", + "label": "respiratory tract epithelial cell", + "exact_synonyms": [ + "airway epithelial cell", + "respiratory epithelial cell" + ] + }, + { + "cl_id": "CL:0002369", + "label": "fungal spore", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002370", + "label": "respiratory tract goblet cell", + "exact_synonyms": [ + "respiratory goblet cell", + "respiratory mucosa goblet cells" + ] + }, + { + "cl_id": "CL:0002372", + "label": "myotube", + "exact_synonyms": [ + "myofiber", + "myofibril" + ] + }, + { + "cl_id": "CL:0002373", + "label": "growth hormone releasing hormone secreting cell", + "exact_synonyms": [ + "GHRH secreting cell", + "somatocrinin secreting cell" + ] + }, + { + "cl_id": "CL:0002374", + "label": "ear hair cell", + "exact_synonyms": [ + "ear receptor cell" + ] + }, + { + "cl_id": "CL:0002375", + "label": "Schwann cell precursor", + "exact_synonyms": [ + "Schwann cell precursor cell" + ] + }, + { + "cl_id": "CL:0002376", + "label": "non-myelinating Schwann cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002377", + "label": "immature Schwann cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002378", + "label": "immature Vgamma2-positive fetal thymocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002379", + "label": "meningothelial cell", + "exact_synonyms": [ + "arachnoid cap cell" + ] + }, + { + "cl_id": "CL:0002380", + "label": "oospore", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002381", + "label": "uninucleate conidium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002382", + "label": "multinucleate conidium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002383", + "label": "conidium of conidiophore head", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002384", + "label": "uninucleate macroconidium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002385", + "label": "blastoconidium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002386", + "label": "multinucleate macroconidium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002387", + "label": "arthroconidium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002388", + "label": "multinucleate arthroconidium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002389", + "label": "uninucleate arthroconidium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002390", + "label": "uninucleate blastconidium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002391", + "label": "multinucleate blastoconidium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002393", + "label": "intermediate monocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002394", + "label": "CD141-positive myeloid dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002395", + "label": "Gr1-high classical monocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002396", + "label": "CD14-low, CD16-positive monocyte", + "exact_synonyms": [ + "non-classical monocyte, human" + ] + }, + { + "cl_id": "CL:0002397", + "label": "CD14-positive, CD16-positive monocyte", + "exact_synonyms": [ + "CD16+ monocyte" + ] + }, + { + "cl_id": "CL:0002398", + "label": "Gr1-positive, CD43-positive monocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002399", + "label": "CD1c-positive myeloid dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002400", + "label": "fraction B/C precursor B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002401", + "label": "mature dendritic epithelial T cell precursor", + "exact_synonyms": [ + "mature DEC precursor", + "mature DETC precursor" + ] + }, + { + "cl_id": "CL:0002402", + "label": "Peyer's patch B cell", + "exact_synonyms": [ + "Peyers patch B cell" + ] + }, + { + "cl_id": "CL:0002403", + "label": "mature Vgamma2-positive fetal thymocyte", + "exact_synonyms": [ + "fetal Vgamma2-positive" + ] + }, + { + "cl_id": "CL:0002404", + "label": "fetal thymocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002405", + "label": "gamma-delta thymocyte", + "exact_synonyms": [ + "gammadelta thymocyte", + "gd thymocyte" + ] + }, + { + "cl_id": "CL:0002406", + "label": "immature Vgamma2-positive thymocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002407", + "label": "mature Vgamma2-positive thymocyte", + "exact_synonyms": [ + "Vgamma2-positive" + ] + }, + { + "cl_id": "CL:0002408", + "label": "immature Vgamma2-negative thymocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002409", + "label": "mature Vgamma2-negative thymocyte", + "exact_synonyms": [ + "Vgamma2-negative" + ] + }, + { + "cl_id": "CL:0002410", + "label": "pancreatic stellate cell", + "exact_synonyms": [ + "PaSC", + "pancreas stellate cell" + ] + }, + { + "cl_id": "CL:0002411", + "label": "Vgamma1.1-positive, Vdelta6.3-negative thymocyte", + "exact_synonyms": [ + "Vg1.1-positive, Vd6.3-negative T cell" + ] + }, + { + "cl_id": "CL:0002412", + "label": "Vgamma1.1-positive, Vdelta6.3-positive thymocyte", + "exact_synonyms": [ + "Vg1.1+Vd6.3+ T cell" + ] + }, + { + "cl_id": "CL:0002413", + "label": "mature Vgamma1.1-positive, Vdelta6.3-negative thymocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002414", + "label": "immature Vgamma1.1-positive, Vdelta6.3-negative thymocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002415", + "label": "immature Vgamma1.1-positive, Vdelta6.3-positive thymocyte", + "exact_synonyms": [ + "immature Vg1.1+Vd6.3+ T cell" + ] + }, + { + "cl_id": "CL:0002416", + "label": "mature Vgamma1.1-positive, Vdelta6.3-positive thymocyte", + "exact_synonyms": [ + "mature Vg1.1+Vd6.3+ T cell" + ] + }, + { + "cl_id": "CL:0002417", + "label": "primitive erythroid lineage cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002418", + "label": "hemangioblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002419", + "label": "mature T cell", + "exact_synonyms": [ + "CD3e-positive T cell", + "mature T-cell" + ] + }, + { + "cl_id": "CL:0002420", + "label": "immature T cell", + "exact_synonyms": [ + "immature T-cell" + ] + }, + { + "cl_id": "CL:0002421", + "label": "nucleated reticulocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002422", + "label": "enucleated reticulocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002423", + "label": "DN2a thymocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002424", + "label": "DN2b thymocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002425", + "label": "early T lineage precursor", + "exact_synonyms": [ + "ETP", + "preT.ETP.Th" + ] + }, + { + "cl_id": "CL:0002426", + "label": "CD11b-positive, CD27-positive natural killer cell, mouse", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002427", + "label": "resting double-positive thymocyte", + "exact_synonyms": [ + "T.DP.sm.Th" + ] + }, + { + "cl_id": "CL:0002428", + "label": "double-positive blast", + "exact_synonyms": [ + "T.DPb.Th", + "activated double-positive thymocyte" + ] + }, + { + "cl_id": "CL:0002429", + "label": "CD69-positive double-positive thymocyte", + "exact_synonyms": [ + "T.DP69+.Th" + ] + }, + { + "cl_id": "CL:0002430", + "label": "CD4-intermediate, CD8-positive double-positive thymocyte", + "exact_synonyms": [ + "T.4int8+.Th", + "T_4int8+_Th" + ] + }, + { + "cl_id": "CL:0002431", + "label": "CD4-positive, CD8-intermediate double-positive thymocyte", + "exact_synonyms": [ + "T.4+8int.Th", + "T_4+8int_Th" + ] + }, + { + "cl_id": "CL:0002432", + "label": "CD24-positive, CD4 single-positive thymocyte", + "exact_synonyms": [ + "CD24-positive, CD4 single-positive semimature thymocyte", + "T.4SP24int.Th" + ] + }, + { + "cl_id": "CL:0002433", + "label": "CD69-positive, CD4-positive single-positive thymocyte", + "exact_synonyms": [ + "T.4SP69+.Th", + "intermediate CD4-single-positive" + ] + }, + { + "cl_id": "CL:0002434", + "label": "CD24-positive, CD8 single-positive thymocyte", + "exact_synonyms": [ + "CD24-positive, CD8 single-positive semimature thymocyte", + "T.8SP24int.Th" + ] + }, + { + "cl_id": "CL:0002435", + "label": "CD69-positive, CD8-positive single-positive thymocyte", + "exact_synonyms": [ + "T.8SP69+.Th", + "intermediate CD8-single-positive" + ] + }, + { + "cl_id": "CL:0002436", + "label": "mature CD4 single-positive thymocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002437", + "label": "mature CD8 single-positive thymocyte", + "exact_synonyms": [ + "T.8SP24-.Th" + ] + }, + { + "cl_id": "CL:0002438", + "label": "NK1.1-positive natural killer cell, mouse", + "exact_synonyms": [ + "NK.sp", + "NK1.1-positive NK cell" + ] + }, + { + "cl_id": "CL:0002439", + "label": "NKGA2-positive natural killer cell, mouse", + "exact_synonyms": [ + "NK.G2A+.SP" + ] + }, + { + "cl_id": "CL:0002440", + "label": "Ly49D-positive natural killer cell, mouse", + "exact_synonyms": [ + "NK.49D+.Sp" + ] + }, + { + "cl_id": "CL:0002441", + "label": "CD94-positive natural killer cell, mouse", + "exact_synonyms": [ + "NK.94+.Sp" + ] + }, + { + "cl_id": "CL:0002442", + "label": "CD94-negative, Ly49CI-negative natural killer cell, mouse", + "exact_synonyms": [ + "CD94- Ly49I-negative NK cell", + "NK.49Cl-94-.Sp" + ] + }, + { + "cl_id": "CL:0002443", + "label": "Ly49CI-positive natural killer cell, mouse", + "exact_synonyms": [ + "Ly49I-positive NK cell", + "NK.49Cl+.Sp" + ] + }, + { + "cl_id": "CL:0002444", + "label": "Ly49H-positive natural killer cell, mouse", + "exact_synonyms": [ + "LyH49H-positive" + ] + }, + { + "cl_id": "CL:0002445", + "label": "Ly49D-negative natural killer cell, mouse", + "exact_synonyms": [ + "NK.49D-.Sp" + ] + }, + { + "cl_id": "CL:0002446", + "label": "Ly49CI-negative natural killer cell, mouse", + "exact_synonyms": [ + "Ly49I-negative NK cell", + "NK.49Cl-.Sp" + ] + }, + { + "cl_id": "CL:0002447", + "label": "CD94-negative natural killer cell, mouse", + "exact_synonyms": [ + "NK.94-.Sp" + ] + }, + { + "cl_id": "CL:0002448", + "label": "Ly49H-negative natural killer cell, mouse", + "exact_synonyms": [ + "LyH49H-negative" + ] + }, + { + "cl_id": "CL:0002449", + "label": "CD94-positive Ly49CI-positive natural killer cell, mouse", + "exact_synonyms": [ + "NK.49Cl+94+.Sp" + ] + }, + { + "cl_id": "CL:0002450", + "label": "tether cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002451", + "label": "mammary stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002453", + "label": "oligodendrocyte precursor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002454", + "label": "CD4-negative, CD8-alpha-negative, CD11b-positive dendritic cell", + "exact_synonyms": [ + "DC.8-4-11b+", + "spleen double-negative dendritic cell" + ] + }, + { + "cl_id": "CL:0002455", + "label": "CD8-alpha-negative plasmacytoid dendritic cell", + "exact_synonyms": [ + "DC.pDC.8-" + ] + }, + { + "cl_id": "CL:0002456", + "label": "CD8-alpha-positive plasmacytoid dendritic cell", + "exact_synonyms": [ + "DC.pDC.8+" + ] + }, + { + "cl_id": "CL:0002457", + "label": "epidermal Langerhans cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002458", + "label": "langerin-positive dermal dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002459", + "label": "langerin-negative dermal dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002460", + "label": "CD8-alpha-negative thymic conventional dendritic cell", + "exact_synonyms": [ + "DC.8-.Th" + ] + }, + { + "cl_id": "CL:0002461", + "label": "CD103-positive dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002462", + "label": "adipose dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002463", + "label": "SIRPa-positive adipose dendritic cell", + "exact_synonyms": [ + "DC.SIRPa+.Ad" + ] + }, + { + "cl_id": "CL:0002464", + "label": "SIRPa-negative adipose dendritic cell", + "exact_synonyms": [ + "DC.SIRPa-.Ad" + ] + }, + { + "cl_id": "CL:0002465", + "label": "CD11b-positive dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002466", + "label": "small intestine serosal dendritic cell", + "exact_synonyms": [ + "DC.11cloSer.SI" + ] + }, + { + "cl_id": "CL:0002467", + "label": "Gr1-high myeloid suppressor cell", + "exact_synonyms": [ + "MDS.Gr1hi" + ] + }, + { + "cl_id": "CL:0002468", + "label": "Gr1-low myeloid suppressor cell", + "exact_synonyms": [ + "MDS.Gr1lo" + ] + }, + { + "cl_id": "CL:0002469", + "label": "MHC-II-negative classical monocyte", + "exact_synonyms": [ + "Mo.6C+II-" + ] + }, + { + "cl_id": "CL:0002470", + "label": "MHC-II-positive classical monocyte", + "exact_synonyms": [ + "Mo.6c+II" + ] + }, + { + "cl_id": "CL:0002471", + "label": "MHC-II-negative non-classical monocyte", + "exact_synonyms": [ + "Mo.6C-II-" + ] + }, + { + "cl_id": "CL:0002472", + "label": "MHC-II-low non-classical monocyte", + "exact_synonyms": [ + "Mo.6C-IIint" + ] + }, + { + "cl_id": "CL:0002473", + "label": "MHC-II-high non-classical monocyte", + "exact_synonyms": [ + "Mo.6C-II+" + ] + }, + { + "cl_id": "CL:0002474", + "label": "lymphoid MHC-II-negative classical monocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002475", + "label": "lymphoid MHC-II-negative non-classical monocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002476", + "label": "bone marrow macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002477", + "label": "adipose macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002478", + "label": "F4/80-negative adipose macrophage", + "exact_synonyms": [ + "MF.Autofl.Ad" + ] + }, + { + "cl_id": "CL:0002479", + "label": "F4/80-positive adipose macrophage", + "exact_synonyms": [ + "MF.F480+.Ad" + ] + }, + { + "cl_id": "CL:0002480", + "label": "nasal mucosa goblet cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002481", + "label": "peritubular myoid cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002482", + "label": "dermal melanocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002483", + "label": "hair follicle melanocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002484", + "label": "epithelial melanocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002485", + "label": "retinal melanocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002486", + "label": "strial intermediate cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002487", + "label": "cutaneous/subcutaneous mechanoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002488", + "label": "trophoblast giant cell", + "exact_synonyms": [ + "giant trophoblast cell" + ] + }, + { + "cl_id": "CL:0002489", + "label": "double negative thymocyte", + "exact_synonyms": [ + "CD4-CD8- T cell", + "double negative T cell" + ] + }, + { + "cl_id": "CL:0002490", + "label": "organ of Corti supporting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002491", + "label": "auditory epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002492", + "label": "strial marginal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002493", + "label": "strial basal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002494", + "label": "cardiocyte", + "exact_synonyms": [ + "heart cell" + ] + }, + { + "cl_id": "CL:0002495", + "label": "fetal cardiomyocyte", + "exact_synonyms": [ + "embryonic cardiomyocyte", + "neonatal cardiomyocyte" + ] + }, + { + "cl_id": "CL:0002496", + "label": "intraepithelial lymphocyte", + "exact_synonyms": [ + "IEL", + "intraepithelial T cell", + "intraepithelial T-cell" + ] + }, + { + "cl_id": "CL:0002497", + "label": "primary trophoblast giant cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002498", + "label": "secondary trophoblast giant cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002499", + "label": "spongiotrophoblast cell", + "exact_synonyms": [ + "spongiotrophoblast" + ] + }, + { + "cl_id": "CL:0002500", + "label": "P enteroendocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002501", + "label": "type D1 enteroendocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002502", + "label": "type M enteroendocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002503", + "label": "adventitial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002504", + "label": "enteric smooth muscle cell", + "exact_synonyms": [ + "intestinal smooth muscle cell" + ] + }, + { + "cl_id": "CL:0002505", + "label": "liver CD103-negative dendritic cell", + "exact_synonyms": [ + "DC.103-11b+.Lv" + ] + }, + { + "cl_id": "CL:0002506", + "label": "liver CD103-positive dendritic cell", + "exact_synonyms": [ + "DC.103+11b-.Lv" + ] + }, + { + "cl_id": "CL:0002507", + "label": "langerin-positive lymph node dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002508", + "label": "langerin-negative, CD103-negative lymph node dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002509", + "label": "CD103-positive, langerin-positive lymph node dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002510", + "label": "CD103-negative, langerin-positive lymph node dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002511", + "label": "CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002512", + "label": "CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002513", + "label": "Vgamma5-positive CD8-alpha alpha positive gamma-delta intraepithelial T cell", + "exact_synonyms": [ + "tgd.vg5+.IEL" + ] + }, + { + "cl_id": "CL:0002514", + "label": "Vgamma5-negative CD8-alpha alpha positive gamma-delta intraepithelial T cell", + "exact_synonyms": [ + "tgd.vg5-.IEL" + ] + }, + { + "cl_id": "CL:0002515", + "label": "interrenal norepinephrine type cell", + "exact_synonyms": [ + "interrenal noradrenaline type cell", + "type n interrenal cell" + ] + }, + { + "cl_id": "CL:0002516", + "label": "interrenal chromaffin cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002517", + "label": "interrenal epinephrin secreting cell", + "exact_synonyms": [ + "type a interrenal cell" + ] + }, + { + "cl_id": "CL:0002518", + "label": "kidney epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002519", + "label": "interrenal epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002520", + "label": "nephrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002521", + "label": "subcutaneous adipocyte", + "exact_synonyms": [ + "subcutaneous fat cell" + ] + }, + { + "cl_id": "CL:0002522", + "label": "renal filtration cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002523", + "label": "mesonephric podocyte", + "exact_synonyms": [ + "mesonephric glomerular visceral epithelial cell" + ] + }, + { + "cl_id": "CL:0002524", + "label": "disseminated nephrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002525", + "label": "metanephric podocyte", + "exact_synonyms": [ + "metanephric glomerular visceral epithelial cell" + ] + }, + { + "cl_id": "CL:0002526", + "label": "CD14-positive dermal dendritic cell", + "exact_synonyms": [ + "CD14+ dermal DC" + ] + }, + { + "cl_id": "CL:0002527", + "label": "immature CD14-positive dermal dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002528", + "label": "mature CD14-positive dermal dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002529", + "label": "CD1a-positive dermal dendritic cell", + "exact_synonyms": [ + "CD1a+ dermal DC" + ] + }, + { + "cl_id": "CL:0002530", + "label": "immature CD1a-positive dermal dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002531", + "label": "mature CD1a-positive dermal dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002532", + "label": "CD16-positive myeloid dendritic cell", + "exact_synonyms": [ + "CD16+ mDC", + "CD16-mDC" + ] + }, + { + "cl_id": "CL:0002533", + "label": "immature CD16-positive myeloid dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002534", + "label": "mature CD16-positive myeloid dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002535", + "label": "epithelial cell of cervix", + "exact_synonyms": [ + "cervical canal epithelial cell", + "cervical canal of uterus epithelial cell", + "cervix epithelial cell", + "cervix of uterus epithelial cell", + "epithelial cell of cervical canal", + "epithelial cell of cervical canal of uterus", + "epithelial cell of cervix of uterus", + "epithelial cell of neck of uterus", + "epithelial cell of uterine cervix", + "neck of uterus epithelial cell", + "uterine cervix epithelial cell" + ] + }, + { + "cl_id": "CL:0002536", + "label": "epithelial cell of amnion", + "exact_synonyms": [ + "amniotic epithelial cell" + ] + }, + { + "cl_id": "CL:0002537", + "label": "amnion mesenchymal stem cell", + "exact_synonyms": [ + "amniotic membrane stem cell" + ] + }, + { + "cl_id": "CL:0002538", + "label": "intrahepatic cholangiocyte", + "exact_synonyms": [ + "small bile duct cholangiocyte" + ] + }, + { + "cl_id": "CL:0002539", + "label": "aortic smooth muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002540", + "label": "mesenchymal stem cell of the bone marrow", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002541", + "label": "chorionic membrane mesenchymal stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002543", + "label": "vein endothelial cell", + "exact_synonyms": [ + "endothelial cell of vein", + "venous endothelial cell" + ] + }, + { + "cl_id": "CL:0002544", + "label": "aortic endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002545", + "label": "thoracic aorta endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002546", + "label": "embryonic blood vessel endothelial progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002547", + "label": "fibroblast of the aortic adventitia", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002548", + "label": "fibroblast of cardiac tissue", + "exact_synonyms": [ + "cardiac fibroblast" + ] + }, + { + "cl_id": "CL:0002549", + "label": "fibroblast of choroid plexus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002550", + "label": "fibroblast of the conjunctiva", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002551", + "label": "fibroblast of dermis", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002552", + "label": "fibroblast of gingiva", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002553", + "label": "fibroblast of lung", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002554", + "label": "fibroblast of lymphatic vessel", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002555", + "label": "fibroblast of mammary gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002556", + "label": "fibroblast of periodontium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002557", + "label": "fibroblast of pulmonary artery", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002558", + "label": "fibroblast of villous mesenchyme", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002559", + "label": "hair follicle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002560", + "label": "inner root sheath cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002561", + "label": "outer root sheath cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002562", + "label": "hair germinal matrix cell", + "exact_synonyms": [ + "trichocyte" + ] + }, + { + "cl_id": "CL:0002563", + "label": "intestinal epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002564", + "label": "nucleus pulposus cell of intervertebral disc", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002565", + "label": "iris pigment epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002566", + "label": "dark melanocyte", + "exact_synonyms": [ + "melanotic melanocyte", + "melanotic melanophore" + ] + }, + { + "cl_id": "CL:0002567", + "label": "light melanocyte", + "exact_synonyms": [ + "amelanotic melanocyte", + "amelanotic melanophore" + ] + }, + { + "cl_id": "CL:0002568", + "label": "mesenchymal stem cell of Wharton's jelly", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002569", + "label": "mesenchymal stem cell of umbilical cord", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002570", + "label": "mesenchymal stem cell of adipose tissue", + "exact_synonyms": [ + "mesenchymal stem cell of adipose" + ] + }, + { + "cl_id": "CL:0002571", + "label": "hepatic mesenchymal stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002572", + "label": "vertebral mesenchymal stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002573", + "label": "Schwann cell", + "exact_synonyms": [ + "neurolemmocyte" + ] + }, + { + "cl_id": "CL:0002574", + "label": "stromal cell of pancreas", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002575", + "label": "central nervous system pericyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002576", + "label": "perineurial cell", + "exact_synonyms": [ + "perineurial glial cell" + ] + }, + { + "cl_id": "CL:0002577", + "label": "placental epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002578", + "label": "mesenteric preadipocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002579", + "label": "omentum preadipocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002580", + "label": "preadipocyte of the breast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002581", + "label": "perirenal preadipocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002582", + "label": "visceral preadipocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002583", + "label": "subcutaneous preadipocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002584", + "label": "renal cortical epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002585", + "label": "retinal blood vessel endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002586", + "label": "retinal pigment epithelial cell", + "exact_synonyms": [ + "RPE" + ] + }, + { + "cl_id": "CL:0002588", + "label": "smooth muscle cell of the umbilical vein", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002589", + "label": "smooth muscle cell of the brachiocephalic vasculature", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002590", + "label": "smooth muscle cell of the brain vasculature", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002591", + "label": "smooth muscle cell of the pulmonary artery", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002592", + "label": "smooth muscle cell of the coronary artery", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002593", + "label": "smooth muscle cell of the internal thoracic artery", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002594", + "label": "smooth muscle cell of the umbilical artery", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002595", + "label": "smooth muscle cell of the subclavian artery", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002596", + "label": "smooth muscle cell of the carotid artery", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002597", + "label": "smooth muscle cell of bladder", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002598", + "label": "bronchial smooth muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002599", + "label": "smooth muscle cell of the esophagus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002600", + "label": "smooth muscle cell of trachea", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002601", + "label": "uterine smooth muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002602", + "label": "annulus pulposus cell", + "exact_synonyms": [ + "anulus pulposus cell" + ] + }, + { + "cl_id": "CL:0002603", + "label": "astrocyte of the cerebellum", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002604", + "label": "hippocampal astrocyte", + "exact_synonyms": [ + "astrocyte of the hippocampal formation", + "astrocyte of the hippocampus" + ] + }, + { + "cl_id": "CL:0002605", + "label": "astrocyte of the cerebral cortex", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002606", + "label": "astrocyte of the spinal cord", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002607", + "label": "migratory enteric neural crest cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002608", + "label": "hippocampal neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002610", + "label": "raphe nuclei neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002611", + "label": "neuron of the dorsal spinal cord", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002612", + "label": "neuron of the ventral spinal cord", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002613", + "label": "striatum neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002614", + "label": "neuron of the substantia nigra", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002615", + "label": "adipocyte of omentum tissue", + "exact_synonyms": [ + "omental adipocyte", + "omental fat cell" + ] + }, + { + "cl_id": "CL:0002616", + "label": "perirenal adipocyte", + "exact_synonyms": [ + "perirenal adipocyte cell", + "perirenal fat cell" + ] + }, + { + "cl_id": "CL:0002617", + "label": "adipocyte of breast", + "exact_synonyms": [ + "breast adipocyte", + "fat cell of breast" + ] + }, + { + "cl_id": "CL:0002618", + "label": "endothelial cell of umbilical vein", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002619", + "label": "adult endothelial progenitor cell", + "exact_synonyms": [ + "EPC" + ] + }, + { + "cl_id": "CL:0002620", + "label": "skin fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002621", + "label": "gingival epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002622", + "label": "prostate stromal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002623", + "label": "acinar cell of salivary gland", + "exact_synonyms": [ + "salivary acinar cell", + "salivary gland acinar cell" + ] + }, + { + "cl_id": "CL:0002624", + "label": "paneth cell of the appendix", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002625", + "label": "seminiferous tubule epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002626", + "label": "immature astrocyte", + "exact_synonyms": [ + "immature astrocytic glia" + ] + }, + { + "cl_id": "CL:0002627", + "label": "mature astrocyte", + "exact_synonyms": [ + "activated astrocyte", + "mature astrocytic glia" + ] + }, + { + "cl_id": "CL:0002628", + "label": "immature microglial cell", + "exact_synonyms": [ + "immature microglia", + "quiescent microglia", + "resting microglia" + ] + }, + { + "cl_id": "CL:0002629", + "label": "mature microglial cell", + "exact_synonyms": [ + "activated microglia", + "mature microglia", + "reactive microglia" + ] + }, + { + "cl_id": "CL:0002630", + "label": "actinomycete-type spore", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002631", + "label": "epithelial cell of upper respiratory tract", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002632", + "label": "epithelial cell of lower respiratory tract", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002633", + "label": "respiratory basal cell", + "exact_synonyms": [ + "airway basal cell", + "airway basal stem cell" + ] + }, + { + "cl_id": "CL:0002634", + "label": "epithelial cell of anal column", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002635", + "label": "nonkeratinized epithelial cell of anal column", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002636", + "label": "nonkeratinized epithelial cell of inferior part of anal canal", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002637", + "label": "keratinized epithelial cell of the anal canal", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002638", + "label": "bronchioalveolar stem cell", + "exact_synonyms": [ + "BASC", + "basal epithelial cell of bronchioalveolar duct junction" + ] + }, + { + "cl_id": "CL:0002639", + "label": "amniotic stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002640", + "label": "amniotic epithelial stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002641", + "label": "epithelial cell of esophageal gland proper", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002642", + "label": "epithelial cell of esophageal cardiac gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002643", + "label": "nonkeratinized cell of stratum corneum of esophageal epithelium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002644", + "label": "endo-epithelial cell of tympanic part of viscerocranial mucosa", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002645", + "label": "endo-epithelial cell of pharyngotympanic part of viscerocranial mucosa", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002651", + "label": "endothelial cell of venous sinus of spleen", + "exact_synonyms": [ + "stave cell" + ] + }, + { + "cl_id": "CL:0002652", + "label": "endothelial cell of high endothelial venule", + "exact_synonyms": [ + "HEV cell" + ] + }, + { + "cl_id": "CL:0002653", + "label": "squamous endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002654", + "label": "epithelial cell of stratum corneum of esophageal epithelium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002655", + "label": "epithelial cell of stratum spinosum of esophageal epithelium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002656", + "label": "glandular endometrial unciliated epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002657", + "label": "glandular cell of esophagus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002658", + "label": "glandular cell of the large intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002659", + "label": "glandular epithelial cell of stomach", + "exact_synonyms": [ + "glandular cell of stomach" + ] + }, + { + "cl_id": "CL:0002660", + "label": "luminal cell of acinus of lactiferous gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002661", + "label": "luminal cell of lactiferous terminal ductal lobular unit", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002662", + "label": "luminal cell of lactiferous duct", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002663", + "label": "myocardial endocrine cell of atrium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002664", + "label": "cardioblast", + "exact_synonyms": [ + "cardiovascular progenitor cell" + ] + }, + { + "cl_id": "CL:0002665", + "label": "otic fibrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002666", + "label": "type II spiral ligament fibrocyte", + "exact_synonyms": [ + "type 2 spiral ligament fibrocyte" + ] + }, + { + "cl_id": "CL:0002667", + "label": "type V spiral ligament fibrocyte", + "exact_synonyms": [ + "type V otic fibrocyte" + ] + }, + { + "cl_id": "CL:0002668", + "label": "type IV spiral ligament fibrocyte", + "exact_synonyms": [ + "type 4 spiral ligament fibrocyte" + ] + }, + { + "cl_id": "CL:0002669", + "label": "type III spiral ligament fibrocyte", + "exact_synonyms": [ + "tension fibroblast", + "type 3 spiral ligament fibrocyte" + ] + }, + { + "cl_id": "CL:0002670", + "label": "type I spiral ligament fibrocyte", + "exact_synonyms": [ + "type 1 spiral ligament fibrocyte" + ] + }, + { + "cl_id": "CL:0002671", + "label": "endothelial stalk cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002672", + "label": "retinal progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002673", + "label": "tongue muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002674", + "label": "H minus", + "exact_synonyms": [ + "H- cell" + ] + }, + { + "cl_id": "CL:0002675", + "label": "H plus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002676", + "label": "neural crest derived neuroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002677", + "label": "naive regulatory T cell", + "exact_synonyms": [ + "naive regulatory T lymphocyte", + "naive regulatory T-cell", + "naive regulatory T-lymphocyte" + ] + }, + { + "cl_id": "CL:0002678", + "label": "memory regulatory T cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002679", + "label": "natural helper lymphocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002680", + "label": "PP cell of intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0002681", + "label": "kidney cortical cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003001", + "label": "bistratified retinal ganglion cell", + "exact_synonyms": [ + "retinal ganglion D cell" + ] + }, + { + "cl_id": "CL:0003002", + "label": "G1 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003003", + "label": "G2 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003004", + "label": "G3 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003005", + "label": "G4 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003006", + "label": "G4-ON retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003007", + "label": "G4-OFF retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003008", + "label": "G5 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003009", + "label": "G6 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003010", + "label": "G7 retinal ganglion cell", + "exact_synonyms": [ + "ON-OFF DS" + ] + }, + { + "cl_id": "CL:0003011", + "label": "G8 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003012", + "label": "G9 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003013", + "label": "G10 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003014", + "label": "G11 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003015", + "label": "G11-ON retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003016", + "label": "G11-OFF retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003017", + "label": "retinal ganglion cell B3 outer", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003018", + "label": "retinal ganglion cell B3 inner", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003020", + "label": "retinal ganglion cell C outer", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003021", + "label": "retinal ganglion cell C4", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003022", + "label": "retinal ganglion cell C5", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003023", + "label": "retinal ganglion cell C6", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003024", + "label": "retinal ganglion cell C inner", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003025", + "label": "retinal ganglion cell C3", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003026", + "label": "retinal ganglion cell D1", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003027", + "label": "retinal ganglion cell D2", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003028", + "label": "M1 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003029", + "label": "M2 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003030", + "label": "M3 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003031", + "label": "M3-ON retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003032", + "label": "M3-OFF retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003033", + "label": "M4 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003034", + "label": "M5 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003035", + "label": "M6 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003036", + "label": "M7 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003037", + "label": "M7-ON retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003038", + "label": "M7-OFF retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003039", + "label": "M8 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003040", + "label": "M9 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003041", + "label": "M9-ON retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003042", + "label": "M9-OFF retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003043", + "label": "M10 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003044", + "label": "M11 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003045", + "label": "M12 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003046", + "label": "M13 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003047", + "label": "M14 retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0003048", + "label": "L cone cell", + "exact_synonyms": [ + "L cone", + "L-cone", + "long wavelength sensitive cone", + "long- (L) wavelength-sensitive cone", + "long-wavelength cone" + ] + }, + { + "cl_id": "CL:0003049", + "label": "M cone cell", + "exact_synonyms": [ + "M cone", + "M-cone", + "middle wavelength sensitive cone", + "middle- (M) wavelength-sensitive cone", + "middle-wavelength-sensitive (M) cone" + ] + }, + { + "cl_id": "CL:0003050", + "label": "S cone cell", + "exact_synonyms": [ + "S cone", + "S-(short-wavelength sensitive) cone", + "S-cone", + "S-cone photoreceptor", + "short wavelength sensitive cone", + "short- (S) wavelength-sensitive cone", + "short-wavelength sensitive cone", + "short-wavelength-sensitive (S) cone" + ] + }, + { + "cl_id": "CL:0003051", + "label": "UV cone cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004001", + "label": "local interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004115", + "label": "retinal ganglion cell B", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004116", + "label": "retinal ganglion cell C", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004117", + "label": "alpha retinal ganglion cell (Mmus)", + "exact_synonyms": [ + "alpha cell", + "retinal ganglion cell A" + ] + }, + { + "cl_id": "CL:0004119", + "label": "retinal ganglion cell B1", + "exact_synonyms": [ + "retinal ganglion cell B4" + ] + }, + { + "cl_id": "CL:0004120", + "label": "retinal ganglion cell A1", + "exact_synonyms": [ + "inner alpha retinal ganglion cell" + ] + }, + { + "cl_id": "CL:0004121", + "label": "retinal ganglion cell B2", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004124", + "label": "retinal ganglion cell C1", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004125", + "label": "retinal ganglion cell C2 inner", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004126", + "label": "retinal ganglion cell C2 outer", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004137", + "label": "retinal ganglion cell A2 inner", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004138", + "label": "retinal ganglion cell A2", + "exact_synonyms": [ + "outer alpha retinal ganglion cell" + ] + }, + { + "cl_id": "CL:0004139", + "label": "retinal ganglion cell A2 outer", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004161", + "label": "510 nm-cone", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004162", + "label": "360 nm-cone", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004183", + "label": "retinal ganglion cell B3", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004213", + "label": "type 3a cone bipolar cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004214", + "label": "type 3b cone bipolar cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004215", + "label": "type 5a cone bipolar cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004216", + "label": "type 5b cone bipolar cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004217", + "label": "H1 horizontal cell", + "exact_synonyms": [ + "A Horizontal Cell" + ] + }, + { + "cl_id": "CL:0004218", + "label": "H2 horizontal cell", + "exact_synonyms": [ + "B Horizontal Cell" + ] + }, + { + "cl_id": "CL:0004219", + "label": "A2 amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004220", + "label": "flag amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004221", + "label": "flag A amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004222", + "label": "flag B amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004223", + "label": "AB diffuse-1 amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004224", + "label": "AB diffuse-2 amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004225", + "label": "spider amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004226", + "label": "monostratified amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004227", + "label": "flat bistratified amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004228", + "label": "broad diffuse amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004229", + "label": "A2-like amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004230", + "label": "diffuse bistratified amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004231", + "label": "recurving diffuse amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004232", + "label": "starburst amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004233", + "label": "DAPI-3 amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004234", + "label": "diffuse multistratified amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004235", + "label": "AB broad diffuse-1 amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004236", + "label": "AB broad diffuse-2 amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004237", + "label": "fountain amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004238", + "label": "asymmetric bistratified amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004239", + "label": "wavy bistratified amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004240", + "label": "WF1 amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004241", + "label": "WF2 amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004242", + "label": "WF3-1 amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004243", + "label": "WF3-2 amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004244", + "label": "WF4 amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004245", + "label": "indoleamine-accumulating amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004246", + "label": "monostratified cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004247", + "label": "bistratified cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004250", + "label": "bistratified retinal amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004251", + "label": "narrow field retinal amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004252", + "label": "medium field retinal amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0004253", + "label": "wide field retinal amacrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0005000", + "label": "spinal cord interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0005001", + "label": "iridoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0005002", + "label": "xanthoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0005003", + "label": "leucoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0005004", + "label": "pigment erythroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0005005", + "label": "cyanoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0005006", + "label": "ionocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0005007", + "label": "Kolmer-Agduhr neuron", + "exact_synonyms": [ + "KA cell", + "KA interneuron", + "KA neuron", + "Kolmer-Agduhr cell" + ] + }, + { + "cl_id": "CL:0005008", + "label": "macular hair cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0005009", + "label": "renal principal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0005010", + "label": "renal intercalated cell", + "exact_synonyms": [ + "intercalated cell" + ] + }, + { + "cl_id": "CL:0005011", + "label": "renal alpha-intercalated cell", + "exact_synonyms": [ + "type A intercalated cell", + "type A-IC" + ] + }, + { + "cl_id": "CL:0005012", + "label": "multiciliated epithelial cell", + "exact_synonyms": [ + "multi-ciliated epithelial cell", + "multiciliated epithelial cell" + ] + }, + { + "cl_id": "CL:0005013", + "label": "single ciliated epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0005014", + "label": "auditory epithelial supporting cell", + "exact_synonyms": [ + "auditory epithelial support cell" + ] + }, + { + "cl_id": "CL:0005015", + "label": "inner phalangeal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0005018", + "label": "ghrelin secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0005019", + "label": "pancreatic epsilon cell", + "exact_synonyms": [ + "pancreatic E cell" + ] + }, + { + "cl_id": "CL:0005020", + "label": "lymphangioblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0005021", + "label": "mesenchymal lymphangioblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0005022", + "label": "vascular lymphangioblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0005023", + "label": "branchiomotor neuron", + "exact_synonyms": [ + "branchi motor neuron", + "special visceral motor neuron" + ] + }, + { + "cl_id": "CL:0005024", + "label": "somatomotor neuron", + "exact_synonyms": [ + "somatic motor neuron" + ] + }, + { + "cl_id": "CL:0005025", + "label": "visceromotor neuron", + "exact_synonyms": [ + "general visceral motor neuron" + ] + }, + { + "cl_id": "CL:0005026", + "label": "hepatoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0007000", + "label": "preameloblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0007001", + "label": "skeletogenic cell", + "exact_synonyms": [ + "scleroblast" + ] + }, + { + "cl_id": "CL:0007002", + "label": "precementoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0007003", + "label": "preodontoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0007004", + "label": "premigratory neural crest cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0007005", + "label": "notochordal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0007006", + "label": "chordamesodermal cell", + "exact_synonyms": [ + "axial mesodermal cell" + ] + }, + { + "cl_id": "CL:0007007", + "label": "notochordal sheath cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0007008", + "label": "notochordal vacuole cell", + "exact_synonyms": [ + "chordablast", + "chordoblast" + ] + }, + { + "cl_id": "CL:0007009", + "label": "prechondroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0007010", + "label": "preosteoblast", + "exact_synonyms": [ + "osteoprogenitor cell" + ] + }, + { + "cl_id": "CL:0007011", + "label": "enteric neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0007012", + "label": "non-terminally differentiated odontoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0007013", + "label": "terminally differentiated odontoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0007016", + "label": "adaxial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0007017", + "label": "Stiftchenzellen", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0007018", + "label": "epidermal ciliary cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0007019", + "label": "epidermal mucus secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0007020", + "label": "bottle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0007021", + "label": "alarm substance cell", + "exact_synonyms": [ + "alarm substance secreting cell", + "club cell (zebrafish)" + ] + }, + { + "cl_id": "CL:0007022", + "label": "micropylar cell", + "exact_synonyms": [ + "plug cell" + ] + }, + { + "cl_id": "CL:0007023", + "label": "flask cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008000", + "label": "non-striated muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008001", + "label": "hematopoietic precursor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008002", + "label": "skeletal muscle fiber", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008003", + "label": "somatic muscle myotube", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008004", + "label": "somatic muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008005", + "label": "obliquely striated somatic muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008006", + "label": "muscle founder cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008007", + "label": "visceral muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008008", + "label": "striated visceral muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008009", + "label": "transversely striated visceral muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008010", + "label": "cranial somatomotor neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008011", + "label": "skeletal muscle satellite stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008012", + "label": "quiescent skeletal muscle satellite cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008013", + "label": "cranial visceromotor neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008015", + "label": "inhibitory motor neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008016", + "label": "activated skeletal muscle satellite cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008017", + "label": "adult skeletal muscle myoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008018", + "label": "somatic muscle myoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008019", + "label": "mesenchymal cell", + "exact_synonyms": [ + "mesenchyme cell" + ] + }, + { + "cl_id": "CL:0008020", + "label": "skeletal muscle satellite myogenic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008021", + "label": "anterior lateral line ganglion neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008022", + "label": "endocardial cushion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008024", + "label": "pancreatic endocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008025", + "label": "noradrenergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008026", + "label": "open tracheal system tracheocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008027", + "label": "rod bipolar cell (sensu Mus)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008028", + "label": "visual system neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008031", + "label": "cortical interneuron", + "exact_synonyms": [ + "cerebral cortex interneuron" + ] + }, + { + "cl_id": "CL:0008032", + "label": "rosehip neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008033", + "label": "decidual pericyte", + "exact_synonyms": [ + "decidual perivascular cell" + ] + }, + { + "cl_id": "CL:0008034", + "label": "mural cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008035", + "label": "microcirculation associated smooth muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008036", + "label": "extravillous trophoblast", + "exact_synonyms": [ + "EVT", + "extravillous cytotrophloblast" + ] + }, + { + "cl_id": "CL:0008037", + "label": "gamma motor neuron", + "exact_synonyms": [ + "fusimotor neuron" + ] + }, + { + "cl_id": "CL:0008038", + "label": "alpha motor neuron", + "exact_synonyms": [ + "alpha motoneuron" + ] + }, + { + "cl_id": "CL:0008039", + "label": "lower motor neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008040", + "label": "squamous endothelial cell of venule", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008041", + "label": "mesothelial cell of intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008042", + "label": "tanycyte of subfornical organ", + "exact_synonyms": [ + "tanycyte-like cell of subfornical organ" + ] + }, + { + "cl_id": "CL:0008044", + "label": "tanycyte of area postrema", + "exact_synonyms": [ + "tanycyte-like cell of area postrema" + ] + }, + { + "cl_id": "CL:0008045", + "label": "tanycyte of subcommissural organ", + "exact_synonyms": [ + "tanycyte-like cell of subcommissural organ" + ] + }, + { + "cl_id": "CL:0008046", + "label": "extrafusal muscle fiber", + "exact_synonyms": [ + "myofibra extrafusalis" + ] + }, + { + "cl_id": "CL:0008047", + "label": "intrafusal muscle fiber", + "exact_synonyms": [ + "myofibra intrafusalis" + ] + }, + { + "cl_id": "CL:0008048", + "label": "upper motor neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008049", + "label": "Betz cell", + "exact_synonyms": [ + "pyramidal cell of Betz" + ] + }, + { + "cl_id": "CL:0008053", + "label": "circumventricular organ capillary endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008055", + "label": "respiratory tract secretory epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008059", + "label": "GABA-Gly neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008060", + "label": "GABA-Glut neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0008061", + "label": "GABA-Chol neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009000", + "label": "sensory neuron of spinal nerve", + "exact_synonyms": [ + "spinal sensory neuron" + ] + }, + { + "cl_id": "CL:0009001", + "label": "compound eye retinal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009002", + "label": "inflammatory cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009003", + "label": "larval midgut cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009004", + "label": "retinal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009005", + "label": "salivary gland cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009006", + "label": "enteroendocrine cell of small intestine", + "exact_synonyms": [ + "small intestine enteroendocrine cell" + ] + }, + { + "cl_id": "CL:0009007", + "label": "gastrointestinal tract (lamina propria) macrophage of small intestine", + "exact_synonyms": [ + "small intestine lamina propria resident macrophage" + ] + }, + { + "cl_id": "CL:0009008", + "label": "gastrointestinal tract (lamina propria) macrophage of large intestine", + "exact_synonyms": [ + "large intestine lamina propria resident macrophage" + ] + }, + { + "cl_id": "CL:0009009", + "label": "paneth cell of colon", + "exact_synonyms": [ + "paneth cell of epithelium of colon", + "paneth-like cell" + ] + }, + { + "cl_id": "CL:0009010", + "label": "transit amplifying cell", + "exact_synonyms": [ + "transient amplifying cell", + "transit amplifying progenitor cell", + "transit-amplifying cell" + ] + }, + { + "cl_id": "CL:0009011", + "label": "transit amplifying cell of colon", + "exact_synonyms": [ + "colon transit amplifying cell", + "transient amplifying cell of colon", + "transient amplifying cell of crypt of Lieberkuhn of colon", + "transit amplifying cell of crypt of Lieberkuhn of colon", + "transit-amplifying cell of colon" + ] + }, + { + "cl_id": "CL:0009012", + "label": "transit amplifying cell of small intestine", + "exact_synonyms": [ + "small intestine transit amplifying cell", + "transient amplifying cell of crypt of Lieberkuhn of small intestine", + "transient amplifying cell of small intestine", + "transit amplifying cell of crypt of Lieberkuhn of small intestine", + "transit-amplifying cell of small intestine" + ] + }, + { + "cl_id": "CL:0009013", + "label": "fetal hepatobiliary progenitor cell", + "exact_synonyms": [ + "HHyP cell", + "fetal hepatobiliary hybrid progenitor cell" + ] + }, + { + "cl_id": "CL:0009014", + "label": "Peyer's patch lymphocyte", + "exact_synonyms": [ + "Peyer's patch resident lymphocyte" + ] + }, + { + "cl_id": "CL:0009015", + "label": "Peyer's patch follicular dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009016", + "label": "intestinal crypt stem cell of large intestine", + "exact_synonyms": [ + "stem cell of large intestine crypt of Lieberkuhn" + ] + }, + { + "cl_id": "CL:0009017", + "label": "intestinal crypt stem cell of small intestine", + "exact_synonyms": [ + "stem cell of small intestine crypt of Lieberkuhn" + ] + }, + { + "cl_id": "CL:0009018", + "label": "lymphocyte of large intestine lamina propria", + "exact_synonyms": [ + "lamina propria lymphocyte of large intestine" + ] + }, + { + "cl_id": "CL:0009019", + "label": "nephrogenic zone cell", + "exact_synonyms": [ + "cortical nephrogenic niche cell", + "cortical nephrogenic zone cell" + ] + }, + { + "cl_id": "CL:0009020", + "label": "tuft cell of appendix", + "exact_synonyms": [ + "appendix tuft cell", + "tuft cell of appendix vermiformis", + "tuft cell of vermiform appendix" + ] + }, + { + "cl_id": "CL:0009021", + "label": "stromal cell of lamina propria of large intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009022", + "label": "stromal cell of lamina propria of small intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009023", + "label": "small intestine Peyer's patch T cell", + "exact_synonyms": [ + "T cell of Peyer's patch of small intestine", + "T cell of small intestine Peyer's patch" + ] + }, + { + "cl_id": "CL:0009024", + "label": "mesothelial cell of small intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009025", + "label": "mesothelial cell of colon", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009026", + "label": "enterocyte of appendix", + "exact_synonyms": [ + "appendix enterocyte", + "enterocyte of appendix vermiformis", + "enterocyte of vermiform appendix" + ] + }, + { + "cl_id": "CL:0009027", + "label": "transit amplifying cell of appendix", + "exact_synonyms": [ + "appendix transit amplifying cell", + "transit amplifying cell of appendix vermiformis", + "transit amplifying cell of vermiform appendix" + ] + }, + { + "cl_id": "CL:0009028", + "label": "intestinal crypt stem cell of appendix", + "exact_synonyms": [ + "appendix intestinal crypt stem cell", + "intestinal crypt stem cell of appendix vermiformis", + "intestinal crypt stem cell of vermiform appendix", + "stem cell of intestinal crypt of Lieberkuhn of appendix", + "stem cell of intestinal crypt of Lieberkuhn of appendix vermiformis" + ] + }, + { + "cl_id": "CL:0009029", + "label": "mesothelial cell of appendix", + "exact_synonyms": [ + "appendix mesothelial cell", + "mesothelial cell of appendix vermiformis", + "mesothelial cell of vermiform appendix" + ] + }, + { + "cl_id": "CL:0009030", + "label": "enteroendocrine cell of appendix", + "exact_synonyms": [ + "appendix enteroendocrine cell", + "enteroendocrine cell of appendix vermiformis", + "enteroendocrine cell of vermiform appendix" + ] + }, + { + "cl_id": "CL:0009031", + "label": "T cell of appendix", + "exact_synonyms": [ + "T cell of appendix vermiformis", + "T cell of vermiform appendix", + "appendix T cell" + ] + }, + { + "cl_id": "CL:0009032", + "label": "B cell of appendix", + "exact_synonyms": [ + "B cell of appendix vermiformis", + "B cell of vermiform appendix", + "appendix B cell" + ] + }, + { + "cl_id": "CL:0009033", + "label": "plasma cell of appendix", + "exact_synonyms": [ + "appendix plasma cell", + "plasma cell of appendix vermiformis", + "plasma cell of vermiform appendix" + ] + }, + { + "cl_id": "CL:0009034", + "label": "dendritic cell of appendix", + "exact_synonyms": [ + "appendix dendritic cell", + "dendritic cell of appendix vermiformis", + "dendritic cell of vermiform appendix" + ] + }, + { + "cl_id": "CL:0009035", + "label": "stromal cell of lamina propria of vermiform appendix", + "exact_synonyms": [ + "stromal cell of appendix lamina propria", + "stromal cell of lamina propria of appendix vermiformis" + ] + }, + { + "cl_id": "CL:0009036", + "label": "appendix macrophage", + "exact_synonyms": [ + "macrophage of appendix", + "macrophage of appendix vermiformis", + "macrophage of vermiform appendix" + ] + }, + { + "cl_id": "CL:0009037", + "label": "lymph node mantle zone B cell", + "exact_synonyms": [ + "mantle zone B cell of lymph node" + ] + }, + { + "cl_id": "CL:0009038", + "label": "colon macrophage", + "exact_synonyms": [ + "macrophage of colon" + ] + }, + { + "cl_id": "CL:0009039", + "label": "colon goblet cell", + "exact_synonyms": [ + "goblet cell of colon" + ] + }, + { + "cl_id": "CL:0009040", + "label": "stromal cell of lamina propria of colon", + "exact_synonyms": [ + "stromal cell of colon lamina propria" + ] + }, + { + "cl_id": "CL:0009041", + "label": "tuft cell of colon", + "exact_synonyms": [ + "colon tuft cell" + ] + }, + { + "cl_id": "CL:0009042", + "label": "enteroendocrine cell of colon", + "exact_synonyms": [ + "colon enteroendocrine cell" + ] + }, + { + "cl_id": "CL:0009043", + "label": "intestinal crypt stem cell of colon", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009044", + "label": "lymphocyte of small intestine lamina propria", + "exact_synonyms": [ + "gastrointestinal tract (lamina propria) lymphocyte of small intestine", + "lamina propria lymphocyte of small intestine", + "small intestine lamina propria lymphocyte" + ] + }, + { + "cl_id": "CL:0009045", + "label": "B cell of medullary sinus of lymph node", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009046", + "label": "T cell of medullary sinus of lymph node", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009047", + "label": "macrophage of medullary sinus of lymph node", + "exact_synonyms": [ + "lymph node medullary sinus macrophage" + ] + }, + { + "cl_id": "CL:0009048", + "label": "anorectum macrophage", + "exact_synonyms": [ + "macrophage of anorectum" + ] + }, + { + "cl_id": "CL:0009049", + "label": "smooth muscle cell of high endothelial venule of lymph node", + "exact_synonyms": [ + "high endothelial venule of lymph node smooth muscle cell" + ] + }, + { + "cl_id": "CL:0009050", + "label": "B cell of anorectum", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009051", + "label": "T cell of anorectum", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009052", + "label": "smooth muscle cell of anorectum", + "exact_synonyms": [ + "anorectum smooth muscle cell" + ] + }, + { + "cl_id": "CL:0009053", + "label": "stromal cell of anorectum lamina propria", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009054", + "label": "microfold cell of epithelium proper of anorectum", + "exact_synonyms": [ + "M cell of anorectum" + ] + }, + { + "cl_id": "CL:0009055", + "label": "paneth cell of anorectum", + "exact_synonyms": [ + "anorectum paneth cell" + ] + }, + { + "cl_id": "CL:0009056", + "label": "transit amplifying cell of anorectum", + "exact_synonyms": [ + "anorectum transit amplifying cell" + ] + }, + { + "cl_id": "CL:0009057", + "label": "anorectum goblet cell", + "exact_synonyms": [ + "goblet cell of anorectum" + ] + }, + { + "cl_id": "CL:0009058", + "label": "enterocyte of anorectum", + "exact_synonyms": [ + "anorectum enterocyte" + ] + }, + { + "cl_id": "CL:0009059", + "label": "plasma cell of medullary sinus of lymph node", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009060", + "label": "marginal zone B cell of lymph node", + "exact_synonyms": [ + "lymph node marginal zone B cell" + ] + }, + { + "cl_id": "CL:0009061", + "label": "intestinal crypt stem cell of anorectum", + "exact_synonyms": [ + "anorectum intestinal crypt stem cell" + ] + }, + { + "cl_id": "CL:0009062", + "label": "germinal center T cell", + "exact_synonyms": [ + "T follicular helper cell of germinal center of lymph node", + "T follicular helper cell of lymph node germinal center", + "lymph node germinal center T follicular helper cell" + ] + }, + { + "cl_id": "CL:0009063", + "label": "enteroendocrine cell of anorectum", + "exact_synonyms": [ + "anorectum enteroendocrine cell" + ] + }, + { + "cl_id": "CL:0009064", + "label": "lymph node paracortex T cell", + "exact_synonyms": [ + "T cell of lymph node paracortex" + ] + }, + { + "cl_id": "CL:0009065", + "label": "tuft cell of anorectum", + "exact_synonyms": [ + "anorectum tuft cell" + ] + }, + { + "cl_id": "CL:0009066", + "label": "stratified squamous epithelial cell of anal canal", + "exact_synonyms": [ + "anal canal stratified squamous epithelial cell" + ] + }, + { + "cl_id": "CL:0009067", + "label": "vacuolated fetal-type enterocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009068", + "label": "CD8aa(I) thymocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009069", + "label": "CD8aa(II) thymocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009070", + "label": "corticomedullary thymic epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009071", + "label": "medullary thymic epithelial cell type 1", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009072", + "label": "medullary thymic epithelial cell type 2", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009073", + "label": "medullary thymic epithelial cell type 3", + "exact_synonyms": [ + "corneocyte-like mTECs", + "corneocyte-like medullary thymic epithelial cell", + "post-Aire cell" + ] + }, + { + "cl_id": "CL:0009074", + "label": "medullary thymic epithelial cell type 4", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009075", + "label": "myo-medullary thymic epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009076", + "label": "neuro-medullary thymic epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009077", + "label": "subcapsular thymic epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009078", + "label": "thymic fibroblast type 1", + "exact_synonyms": [ + "thymic capsular fibroblast" + ] + }, + { + "cl_id": "CL:0009079", + "label": "thymic fibroblast type 2", + "exact_synonyms": [ + "thymic interlobular fibroblast" + ] + }, + { + "cl_id": "CL:0009080", + "label": "tuft cell of small intestine", + "exact_synonyms": [ + "brush cell of epithelium of small intestine", + "brush cell of epithelium proper of small intestine", + "brush cell of small intestine", + "tuft cell of epithelium of small intestine" + ] + }, + { + "cl_id": "CL:0009081", + "label": "specified double negative thymocyte (Homo sapiens)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009082", + "label": "committed double negative thymocyte (Homo sapiens)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009083", + "label": "rearranging double negative thymocyte (Homo sapiens)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009084", + "label": "glandular epithelial cell of endometrium", + "exact_synonyms": [ + "endometrial glandular epithelial cell", + "epithelial cell of endometrial gland" + ] + }, + { + "cl_id": "CL:0009085", + "label": "colony forming unit \u2013 Hill cell", + "exact_synonyms": [ + "CFU-Hill" + ] + }, + { + "cl_id": "CL:0009086", + "label": "endothelial cell of respiratory system lymphatic vessel", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009087", + "label": "fused extravillous trophoblast", + "exact_synonyms": [ + "fused EVT" + ] + }, + { + "cl_id": "CL:0009088", + "label": "circulating angiogenic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009089", + "label": "lung pericyte", + "exact_synonyms": [ + "lung pericyte cell", + "pulmonary pericyte" + ] + }, + { + "cl_id": "CL:0009090", + "label": "endothelial colony forming cell", + "exact_synonyms": [ + "ECFC" + ] + }, + { + "cl_id": "CL:0009091", + "label": "Leydig stem cell", + "exact_synonyms": [ + "stem Leydig cell" + ] + }, + { + "cl_id": "CL:0009092", + "label": "endothelial cell of placenta", + "exact_synonyms": [ + "placental endothelial cell" + ] + }, + { + "cl_id": "CL:0009093", + "label": "smooth muscle cell of placenta", + "exact_synonyms": [ + "placental smooth muscle cell" + ] + }, + { + "cl_id": "CL:0009094", + "label": "endothelial cell of hepatic portal vein", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009095", + "label": "endothelial cell of uterus", + "exact_synonyms": [ + "uterine endothelial cell" + ] + }, + { + "cl_id": "CL:0009096", + "label": "esophagus non-keratinized squamous epithelial cell", + "exact_synonyms": [ + "esophageal non-keratinized squamous epithelial cell", + "esophageal nonkeratinized squamous epithelial cell", + "esophagus non-keratinizing squamous epithelial cell", + "esophagus nonkeratinizing squamous epithelial cell", + "non-keratinized squamous epithelial cell of esophagus", + "non-keratinizing squamous epithelial cell of esophagus", + "nonkeratinized squamous epithelial cell of esophagus", + "nonkeratinizing squamous epithelial cell of esophagus" + ] + }, + { + "cl_id": "CL:0009097", + "label": "embryonic skeletal muscle fiber", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009098", + "label": "fetal and neonatal skeletal muscle fiber", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009099", + "label": "fibro/adipogenic progenitor cell", + "exact_synonyms": [ + "fibro/adipogenic progenitor" + ] + }, + { + "cl_id": "CL:0009100", + "label": "hepatic portal fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009101", + "label": "fibroblastic reticular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009102", + "label": "lymph node fibroblastic reticular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009103", + "label": "lymph node marginal reticular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009104", + "label": "B cell zone reticular cell", + "exact_synonyms": [ + "lymph node germinal center dark zone fibroblastic reticular cell" + ] + }, + { + "cl_id": "CL:0009105", + "label": "T cell zone reticular cell", + "exact_synonyms": [ + "lymph node T cell domain fibroblastic reticular cell" + ] + }, + { + "cl_id": "CL:0009106", + "label": "medullary reticular cell", + "exact_synonyms": [ + "lymph node medullary reticular cell", + "medullary reticular cell of lymph node" + ] + }, + { + "cl_id": "CL:0009107", + "label": "lymphatic endothelial cell of subcapsular sinus ceiling", + "exact_synonyms": [ + "lymphatic endothelial cell of subcapsular sinus ceiling of lymph node" + ] + }, + { + "cl_id": "CL:0009108", + "label": "lymphatic endothelial cell of subcapsular sinus floor", + "exact_synonyms": [ + "lymphatic endothelial cell of subcapsular sinus floor of lymph node" + ] + }, + { + "cl_id": "CL:0009109", + "label": "lymphatic endothelial cell of trabecula", + "exact_synonyms": [ + "lymphatic endothelial cell of lymph node trabecula", + "lymphatic endothelial cell of trabeculae" + ] + }, + { + "cl_id": "CL:0009110", + "label": "lymphatic endothelial cell of medulla ceiling", + "exact_synonyms": [ + "lymphatic endothelial cell of lymph node medulla ceiling" + ] + }, + { + "cl_id": "CL:0009111", + "label": "centrocyte", + "exact_synonyms": [ + "lymph node centrocyte" + ] + }, + { + "cl_id": "CL:0009112", + "label": "centroblast", + "exact_synonyms": [ + "lymph node centroblast" + ] + }, + { + "cl_id": "CL:0009113", + "label": "T follicular regulatory cell", + "exact_synonyms": [ + "follicular regulatory T cell" + ] + }, + { + "cl_id": "CL:0009114", + "label": "monocytoid B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009115", + "label": "lymph node lymphatic vessel endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0009116", + "label": "progenitor cell of mammary luminal epithelium", + "exact_synonyms": [ + "progenitor cell of luminal mammary epithelium" + ] + }, + { + "cl_id": "CL:0010000", + "label": "keratinized cell of hair follicle", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0010001", + "label": "stromal cell of bone marrow", + "exact_synonyms": [ + "bone marrow stromal cell" + ] + }, + { + "cl_id": "CL:0010002", + "label": "epithelial cell of umbilical artery", + "exact_synonyms": [ + "umbilical artery epithelial cell" + ] + }, + { + "cl_id": "CL:0010004", + "label": "mononuclear cell of bone marrow", + "exact_synonyms": [ + "bone marrow mononuclear cell" + ] + }, + { + "cl_id": "CL:0010005", + "label": "atrioventricular bundle cell", + "exact_synonyms": [ + "AV bundle cell" + ] + }, + { + "cl_id": "CL:0010006", + "label": "cardiac blood vessel endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0010007", + "label": "His-Purkinje system cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0010008", + "label": "cardiac endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0010009", + "label": "camera-type eye photoreceptor cell", + "exact_synonyms": [ + "camera type eye photoreceptor cell" + ] + }, + { + "cl_id": "CL:0010010", + "label": "cerebellar stellate cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0010011", + "label": "cerebral cortex GABAergic interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0010012", + "label": "cerebral cortex neuron", + "exact_synonyms": [ + "cortical neuron", + "neuron of cerebral cortex" + ] + }, + { + "cl_id": "CL:0010013", + "label": "type I pinealocyte", + "exact_synonyms": [ + "light pinealocyte" + ] + }, + { + "cl_id": "CL:0010014", + "label": "type II pinealocyte", + "exact_synonyms": [ + "dark pinealocyte" + ] + }, + { + "cl_id": "CL:0010015", + "label": "coronet cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0010016", + "label": "collar cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0010017", + "label": "zygote", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0010020", + "label": "cardiac glial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0010021", + "label": "cardiac myoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0010022", + "label": "cardiac neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011000", + "label": "dorsal horn interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011001", + "label": "spinal cord motor neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011002", + "label": "lateral motor column neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011003", + "label": "magnocellular neurosecretory cell", + "exact_synonyms": [ + "magnocellular neuron" + ] + }, + { + "cl_id": "CL:0011004", + "label": "lens fiber cell", + "exact_synonyms": [ + "lens fibre cell" + ] + }, + { + "cl_id": "CL:0011005", + "label": "GABAergic interneuron", + "exact_synonyms": [ + "GABAergic inhibitory interneuron" + ] + }, + { + "cl_id": "CL:0011006", + "label": "Lugaro cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011007", + "label": "paraxial cell", + "exact_synonyms": [ + "paraxial mesoderm cell", + "somitic mesoderm cell" + ] + }, + { + "cl_id": "CL:0011008", + "label": "embryonic hemocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011009", + "label": "embryonic plasmatocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011010", + "label": "lateral mesodermal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011011", + "label": "intermediate mesodermal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011012", + "label": "neural crest cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011013", + "label": "motile sperm cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011014", + "label": "non-motile sperm cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011015", + "label": "amoeboid sperm cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011016", + "label": "flagellated sperm cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011017", + "label": "vagal neural crest cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011018", + "label": "lymphoid tissue\u2013inducer cell", + "exact_synonyms": [ + "LTi", + "lymphoid tissue inducer cell" + ] + }, + { + "cl_id": "CL:0011019", + "label": "mesothelial cell of epicardium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011020", + "label": "neural progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011021", + "label": "fibroblast of upper back skin", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011022", + "label": "fibroblast of skin of back", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011023", + "label": "CD25+ mast cell", + "exact_synonyms": [ + "CD25+ neoplastic mast cell" + ] + }, + { + "cl_id": "CL:0011024", + "label": "double negative T regulatory cell", + "exact_synonyms": [ + "CD4-negative, CD8-negative, alpha-beta regulatory T cells", + "DN Treg", + "double-negative alpha-beta regulatory T cell" + ] + }, + { + "cl_id": "CL:0011025", + "label": "exhausted T cell", + "exact_synonyms": [ + "Tex cell" + ] + }, + { + "cl_id": "CL:0011026", + "label": "progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011027", + "label": "skeletal muscle fibroblast", + "exact_synonyms": [ + "skeleton muscle fibroblast" + ] + }, + { + "cl_id": "CL:0011028", + "label": "olfactory ensheathing cell", + "exact_synonyms": [ + "OEC" + ] + }, + { + "cl_id": "CL:0011029", + "label": "cnidocyte", + "exact_synonyms": [ + "cnidoblast", + "nematocyte" + ] + }, + { + "cl_id": "CL:0011030", + "label": "dermal microvascular endothelial cell", + "exact_synonyms": [ + "DMEC cell", + "dermal microvascular endothelium cell" + ] + }, + { + "cl_id": "CL:0011031", + "label": "monocyte-derived dendritic cell", + "exact_synonyms": [ + "MDDC cell" + ] + }, + { + "cl_id": "CL:0011032", + "label": "lysosome-rich enterocyte", + "exact_synonyms": [ + "LRE" + ] + }, + { + "cl_id": "CL:0011100", + "label": "galanergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011101", + "label": "chorionic trophoblast cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011102", + "label": "parasympathetic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011103", + "label": "sympathetic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011104", + "label": "interplexiform cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011105", + "label": "dopamanergic interplexiform cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011106", + "label": "GABAnergic interplexiform cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011108", + "label": "colon epithelial cell", + "exact_synonyms": [ + "colonic epithelial cell" + ] + }, + { + "cl_id": "CL:0011109", + "label": "hypocretin-secreting neuron", + "exact_synonyms": [ + "orexin" + ] + }, + { + "cl_id": "CL:0011110", + "label": "histaminergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011111", + "label": "hypothalamic gonadotropin-releasing hormone neuron", + "exact_synonyms": [ + "GnRH neuron", + "GnRH-secreting neuron" + ] + }, + { + "cl_id": "CL:0011113", + "label": "spiral ganglion neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011114", + "label": "segmented neutrophil of bone marrow", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0011115", + "label": "precursor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0012000", + "label": "astrocyte of the forebrain", + "exact_synonyms": [ + "forebrain astrocyte" + ] + }, + { + "cl_id": "CL:0012001", + "label": "neuron of the forebrain", + "exact_synonyms": [ + "forebrain neuron" + ] + }, + { + "cl_id": "CL:0013000", + "label": "forebrain radial glial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0015000", + "label": "cranial motor neuron", + "exact_synonyms": [ + "cranial motoneuron" + ] + }, + { + "cl_id": "CL:0017000", + "label": "pulmonary ionocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0017001", + "label": "splanchnic mesodermal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0017002", + "label": "prostate neuroendocrine cell", + "exact_synonyms": [ + "neuroendocrine cell of prostate epithelium", + "neuroendocrine cell of the prostate" + ] + }, + { + "cl_id": "CL:0017003", + "label": "epithelial cell of prostatic urethra", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0017004", + "label": "telocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0017005", + "label": "lymphoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0017006", + "label": "B-lymphoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0017009", + "label": "Axl+ dendritic cell, human", + "exact_synonyms": [ + "AS DC, human" + ] + }, + { + "cl_id": "CL:0017010", + "label": "hillock cell of urethral epithelium", + "exact_synonyms": [ + "hillock cell of urethra" + ] + }, + { + "cl_id": "CL:0017011", + "label": "hillock cell of prostatic urethral epithelium", + "exact_synonyms": [ + "hillock cell of prostatic urethra" + ] + }, + { + "cl_id": "CL:0017500", + "label": "neutrophillic cytoplasm", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0017502", + "label": "acidophilic cytoplasm", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0017503", + "label": "basophilic cytoplasm", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0017504", + "label": "polychromatophilic cytoplasm", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0017506", + "label": "banded nucleus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0017507", + "label": "reniform nucleus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0017508", + "label": "cartwheel heterochromatin", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0017509", + "label": "alobate nucleus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0019001", + "label": "tracheobronchial serous cell", + "exact_synonyms": [ + "serous cell of tracheobronchial tree" + ] + }, + { + "cl_id": "CL:0019002", + "label": "tracheobronchial chondrocyte", + "exact_synonyms": [ + "chondrocyte of tracheobronchial tree" + ] + }, + { + "cl_id": "CL:0019003", + "label": "tracheobronchial goblet cell", + "exact_synonyms": [ + "goblet cell of tracheobronchial tree" + ] + }, + { + "cl_id": "CL:0019015", + "label": "lung parenchyma resident eosinophil", + "exact_synonyms": [ + "lung-resident eosinophil", + "rEos" + ] + }, + { + "cl_id": "CL:0019017", + "label": "lymphatic vessel smooth muscle cell", + "exact_synonyms": [ + "smooth muscle cell of lymphatic vessel" + ] + }, + { + "cl_id": "CL:0019018", + "label": "blood vessel smooth muscle cell", + "exact_synonyms": [ + "smooth muscle cell of blood vessel" + ] + }, + { + "cl_id": "CL:0019019", + "label": "tracheobronchial smooth muscle cell", + "exact_synonyms": [ + "smooth muscle cell of tracheobronchial tree" + ] + }, + { + "cl_id": "CL:0019020", + "label": "extrahepatic cholangiocyte", + "exact_synonyms": [ + "large bile duct cholangiocyte" + ] + }, + { + "cl_id": "CL:0019021", + "label": "endothelial cell of periportal hepatic sinusoid", + "exact_synonyms": [ + "periportal LSEC", + "periportal hepatic sinusoidal endothelial cell" + ] + }, + { + "cl_id": "CL:0019022", + "label": "endothelial cell of pericentral hepatic sinusoid", + "exact_synonyms": [ + "central venous hepatic sinusoidal endothelial cell", + "pericentral LSEC" + ] + }, + { + "cl_id": "CL:0019026", + "label": "periportal region hepatocyte", + "exact_synonyms": [ + "periportal hepatocyte" + ] + }, + { + "cl_id": "CL:0019028", + "label": "midzonal region hepatocyte", + "exact_synonyms": [ + "midzonal hepatocyte" + ] + }, + { + "cl_id": "CL:0019029", + "label": "centrilobular region hepatocyte", + "exact_synonyms": [ + "centrilobular hepatocyte" + ] + }, + { + "cl_id": "CL:0019031", + "label": "intestine goblet cell", + "exact_synonyms": [ + "intestinal goblet cell" + ] + }, + { + "cl_id": "CL:0019032", + "label": "intestinal tuft cell", + "exact_synonyms": [ + "intestinal brush cell" + ] + }, + { + "cl_id": "CL:0020000", + "label": "gut mesenchymal lymphoid tissue organizer cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020001", + "label": "V1delta gamma-delta T cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020002", + "label": "mucosal-associated invariant T cell, human", + "exact_synonyms": [ + "mucosal-associated invariant T lymphocyte, human", + "mucosal-associated invariant T-cell, human", + "mucosal-associated invariant T-lymphocyte, human" + ] + }, + { + "cl_id": "CL:0020003", + "label": "internal globus pallidus core projecting neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020004", + "label": "internal globus pallidus shell projection neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020005", + "label": "spiral ligament fibrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020006", + "label": "OB-Dopa-GABA", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020007", + "label": "dorso-striatal cholinergic-GABAergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020008", + "label": "striatal cholinergic-GABAergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020009", + "label": "prototypic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020010", + "label": "arkypallidal neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020011", + "label": "hair follicle associated fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020012", + "label": "hair follicle isthmus-associated fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020013", + "label": "dermal sheath fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020014", + "label": "intrinsically photosensitive retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020015", + "label": "transitional principal-intercalated cell of kidney collecting duct", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020016", + "label": "osteochondral skeletal stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020017", + "label": "M0 macrophage", + "exact_synonyms": [ + "naive macrophage", + "non-activated macrophage", + "resting-state macrophages" + ] + }, + { + "cl_id": "CL:0020018", + "label": "proliferative fibrochondrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020019", + "label": "regulatory chondrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020020", + "label": "homeostatic chondrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020021", + "label": "fibrochondrocyte progenitor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020022", + "label": "prehypertrophic chondrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020023", + "label": "effector chondrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020024", + "label": "alpha retinal ganglion cell OFF-sustained (Mmus)", + "exact_synonyms": [ + "C42", + "G5" + ] + }, + { + "cl_id": "CL:0020025", + "label": "alpha retinal ganglion cell ON-sustained (Mmus)", + "exact_synonyms": [ + "C43", + "G24" + ] + }, + { + "cl_id": "CL:0020026", + "label": "alpha retinal ganglion cell OFF-transient (Mmus)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020027", + "label": "alpha retinal ganglion cell ON-transient (Mmus)", + "exact_synonyms": [ + "C41", + "G19" + ] + }, + { + "cl_id": "CL:0020028", + "label": "hybrid osteochondral skeletal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020029", + "label": "cuboidal epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020030", + "label": "CD4-positive exhausted alpha-beta T cell", + "exact_synonyms": [ + "CD4+ exhausted T lymphocyte", + "exhausted CD4 T cell", + "exhausted CD4-positive T cell" + ] + }, + { + "cl_id": "CL:0020031", + "label": "CD8-positive exhausted alpha-beta T cell", + "exact_synonyms": [ + "CD8+ exhausted T lymphocyte", + "exhausted CD8 T cell", + "exhausted CD8-positive T cell" + ] + }, + { + "cl_id": "CL:0020032", + "label": "oRGC2", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020033", + "label": "stem cell memory CD4-positive, alpha-beta T cell", + "exact_synonyms": [ + "CD4+ T memory stem cell", + "CD4+ TSCM cell", + "CD4-positive TSCM cell", + "stem cell memory CD4+ T-cell", + "stem cell memory CD4+ T-lymphocyte", + "stem cell memory CD4+ alpha-beta T cell", + "stem cell memory CD4-positive, alpha-beta T lymphocyte", + "stem cell\u2013like memory CD4+ T cell", + "stem cell\u2013like memory CD4-positive, alpha-beta T cell" + ] + }, + { + "cl_id": "CL:0020034", + "label": "stem cell memory CD8-positive, alpha-beta T cell", + "exact_synonyms": [ + "CD8+ T memory stem cell", + "CD8+ TSCM cell", + "CD8-positive TSCM cell", + "stem cell memory CD8+ T-cell", + "stem cell memory CD8+ T-lymphocyte", + "stem cell memory CD8+ alpha-beta T cell", + "stem cell memory CD8-positive, alpha-beta T lymphocyte", + "stem cell\u2013like memory CD8+ T cell", + "stem cell\u2013like memory CD8-positive, alpha-beta T cell" + ] + }, + { + "cl_id": "CL:0020035", + "label": "intestinal intraepithelial lymphocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020036", + "label": "oRGC1", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020037", + "label": "superficial zone articular chondrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020038", + "label": "middle zone articular chondrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020039", + "label": "deep zone articular chondrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020040", + "label": "calcified zone articular chondrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020041", + "label": "oRGC4", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020042", + "label": "oRGC5", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020043", + "label": "fasciacyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020044", + "label": "migratory muscle precursor", + "exact_synonyms": [ + "MMP" + ] + }, + { + "cl_id": "CL:0020045", + "label": "Dogiel type II neuron", + "exact_synonyms": [ + "multiaxonal enteric neuron", + "type II enteric neuron" + ] + }, + { + "cl_id": "CL:0020046", + "label": "intrinsic primary afferent neuron of myenteric plexus", + "exact_synonyms": [ + "multiaxonal cholinergic myenteric sensory neuron", + "myenteric sensory neuron" + ] + }, + { + "cl_id": "CL:0020047", + "label": "interneuron of myenteric plexus", + "exact_synonyms": [ + "enteric interneuron of myenteric plexus" + ] + }, + { + "cl_id": "CL:0020048", + "label": "secretomotor/vasodilator neuron of myenteric plexus", + "exact_synonyms": [ + "VIP-positive secretomotor neuron" + ] + }, + { + "cl_id": "CL:0020049", + "label": "intestinofugal neuron", + "exact_synonyms": [ + "cholinergic viscerofugal neuron", + "viscerofugal neuron" + ] + }, + { + "cl_id": "CL:0020050", + "label": "ascending interneuron of myenteric plexus", + "exact_synonyms": [ + "ascending myenteric interneuron", + "cholinergic enkephalinergic myenteric interneuron" + ] + }, + { + "cl_id": "CL:0020051", + "label": "descending interneuron of myenteric plexus", + "exact_synonyms": [ + "descending myenteric interneuron" + ] + }, + { + "cl_id": "CL:0020052", + "label": "stubby Dogiel type I neuron of myenteric plexus", + "exact_synonyms": [ + "lamellar Dogiel type I neuron", + "stubby Dogiel I neuron" + ] + }, + { + "cl_id": "CL:0020053", + "label": "spiny Dogiel type I neuron of myenteric plexus", + "exact_synonyms": [ + "spiny Dogiel I neuron" + ] + }, + { + "cl_id": "CL:0020054", + "label": "Dogiel type II neuron of myenteric plexus", + "exact_synonyms": [ + "AH-type myenteric neuron", + "multiaxonal myenteric sensory neuron", + "type II myenteric neuron" + ] + }, + { + "cl_id": "CL:0020055", + "label": "calretinin-positive intrinsic primary afferent neuron of myenteric plexus", + "exact_synonyms": [ + "calretinin-positive myenteric sensory neuron" + ] + }, + { + "cl_id": "CL:0020056", + "label": "calretinin-negative intrinsic primary afferent neuron of myenteric plexus", + "exact_synonyms": [ + "calretinin-negative myenteric sensory neuron" + ] + }, + { + "cl_id": "CL:0020057", + "label": "cholinergic neuron of myenteric plexus", + "exact_synonyms": [ + "ChAT-positive myenteric neuron" + ] + }, + { + "cl_id": "CL:0020058", + "label": "nitrergic neuron of myenteric plexus", + "exact_synonyms": [ + "NOS1-positive myenteric neuron", + "nNOS-positive myenteric neuron" + ] + }, + { + "cl_id": "CL:0020059", + "label": "serous demilune cell of salivary gland", + "exact_synonyms": [ + "serous demilune cell" + ] + }, + { + "cl_id": "CL:0020060", + "label": "basal duct cell of salivary gland", + "exact_synonyms": [ + "basal ductal cell of salivary gland" + ] + }, + { + "cl_id": "CL:0020061", + "label": "periductal fibroblast of salivary gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020062", + "label": "junctional epithelial cell", + "exact_synonyms": [ + "JE cell", + "cell of junctional epithelium" + ] + }, + { + "cl_id": "CL:0020063", + "label": "tuft cell of parotid gland", + "exact_synonyms": [ + "parotid gland tuft cell" + ] + }, + { + "cl_id": "CL:0020064", + "label": "tuft cell of sublingual gland", + "exact_synonyms": [ + "sublingual gland tuft cell" + ] + }, + { + "cl_id": "CL:0020065", + "label": "ionocyte of salivary gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:0020066", + "label": "myoepithelial cell of salivary gland", + "exact_synonyms": [ + "salivary gland myoepithelial cell", + "salivary myoepithelial cell" + ] + }, + { + "cl_id": "CL:1000001", + "label": "retrotrapezoid nucleus neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000022", + "label": "mesonephric nephron tubule epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000042", + "label": "forebrain neuroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000050", + "label": "lateral line nerve glial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000073", + "label": "spinal cord radial glial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000082", + "label": "stretch receptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000083", + "label": "stratified keratinized epithelial stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000085", + "label": "stratified non keratinized epithelial stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000090", + "label": "pronephric nephron tubule epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000123", + "label": "metanephric nephron tubule epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000143", + "label": "lung goblet cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000147", + "label": "cardiac valve cell", + "exact_synonyms": [ + "heart valve cell" + ] + }, + { + "cl_id": "CL:1000155", + "label": "Malpighian tubule stellate cell", + "exact_synonyms": [ + "Malpighian tubule Type II cell" + ] + }, + { + "cl_id": "CL:1000182", + "label": "malpighian tubule tip cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000191", + "label": "pillar cell", + "exact_synonyms": [ + "pillar cell of cochlea", + "pillar cell of corti", + "rod cell of Corti" + ] + }, + { + "cl_id": "CL:1000217", + "label": "growth plate cartilage chondrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000222", + "label": "stomach neuroendocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000223", + "label": "pulmonary neuroendocrine cell", + "exact_synonyms": [ + "lung neuroendocrine cell" + ] + }, + { + "cl_id": "CL:1000236", + "label": "posterior lateral line nerve glial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000239", + "label": "anterior lateral line nerve glial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000245", + "label": "posterior lateral line ganglion neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000271", + "label": "lung multiciliated epithelial cell", + "exact_synonyms": [ + "lung ciliated cell" + ] + }, + { + "cl_id": "CL:1000272", + "label": "lung secretory cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000274", + "label": "trophectodermal cell", + "exact_synonyms": [ + "trophectoderm cell" + ] + }, + { + "cl_id": "CL:1000275", + "label": "smooth muscle cell of small intestine", + "exact_synonyms": [ + "non-striated muscle fiber of small intestine" + ] + }, + { + "cl_id": "CL:1000276", + "label": "smooth muscle fiber of duodenum", + "exact_synonyms": [ + "non-striated muscle fiber of duodenum" + ] + }, + { + "cl_id": "CL:1000277", + "label": "smooth muscle fiber of jejunum", + "exact_synonyms": [ + "non-striated muscle fiber of jejunum" + ] + }, + { + "cl_id": "CL:1000278", + "label": "smooth muscle fiber of ileum", + "exact_synonyms": [ + "non-striated muscle fiber of ileum" + ] + }, + { + "cl_id": "CL:1000279", + "label": "smooth muscle cell of large intestine", + "exact_synonyms": [ + "non-striated muscle fiber of large intestine" + ] + }, + { + "cl_id": "CL:1000280", + "label": "smooth muscle cell of colon", + "exact_synonyms": [ + "non-striated muscle fiber of colon" + ] + }, + { + "cl_id": "CL:1000281", + "label": "smooth muscle cell of cecum", + "exact_synonyms": [ + "non-striated muscle fiber of cecum", + "smooth muscle fiber of cecum" + ] + }, + { + "cl_id": "CL:1000282", + "label": "smooth muscle fiber of ascending colon", + "exact_synonyms": [ + "non-striated muscle fiber of ascending colon" + ] + }, + { + "cl_id": "CL:1000283", + "label": "smooth muscle fiber of transverse colon", + "exact_synonyms": [ + "non-striated muscle fiber of transverse colon" + ] + }, + { + "cl_id": "CL:1000284", + "label": "smooth muscle fiber of descending colon", + "exact_synonyms": [ + "non-striated muscle fiber of descending colon" + ] + }, + { + "cl_id": "CL:1000285", + "label": "smooth muscle cell of sigmoid colon", + "exact_synonyms": [ + "non-striated muscle fiber of sigmoid colon" + ] + }, + { + "cl_id": "CL:1000286", + "label": "smooth muscle cell of rectum", + "exact_synonyms": [ + "non-striated muscle fiber of rectum", + "smooth muscle fiber of rectum" + ] + }, + { + "cl_id": "CL:1000287", + "label": "myocyte of anterior internodal tract", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000288", + "label": "myocyte of atrial branch of anterior internodal tract", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000289", + "label": "myocyte of atrial septal branch of anterior internodal tract", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000290", + "label": "myocyte of middle internodal tract", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000291", + "label": "myocyte of posterior internodal tract", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000296", + "label": "epithelial cell of urethra", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000298", + "label": "mesothelial cell of dura mater", + "exact_synonyms": [ + "squamous mesothelial cell of dura mater" + ] + }, + { + "cl_id": "CL:1000299", + "label": "fibroblast of connective tissue of prostate", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000300", + "label": "fibroblast of outer membrane of prostatic capsule", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000301", + "label": "fibroblast of subepithelial connective tissue of prostatic gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000302", + "label": "fibroblast of papillary layer of dermis", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000303", + "label": "fibroblast of areolar connective tissue", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000304", + "label": "fibroblast of connective tissue of nonglandular part of prostate", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000305", + "label": "fibroblast of connective tissue of glandular part of prostate", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000306", + "label": "fibroblast of tunica adventitia of artery", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000307", + "label": "fibroblast of dense regular elastic tissue", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000308", + "label": "fibrocyte of adventitia of ureter", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000309", + "label": "epicardial adipocyte", + "exact_synonyms": [ + "adipocyte of epicardial fat", + "epicardial fat cell" + ] + }, + { + "cl_id": "CL:1000310", + "label": "adipocyte of epicardial fat of right ventricle", + "exact_synonyms": [ + "epicardial adipocyte of right ventricle", + "epicardial fat cell of right ventricle" + ] + }, + { + "cl_id": "CL:1000311", + "label": "adipocyte of epicardial fat of left ventricle", + "exact_synonyms": [ + "epicardial adipocyte of left ventricle", + "epicardial fat cell of left ventricle" + ] + }, + { + "cl_id": "CL:1000312", + "label": "bronchial goblet cell", + "exact_synonyms": [ + "goblet cell of epithelium of bronchus" + ] + }, + { + "cl_id": "CL:1000313", + "label": "gastric goblet cell", + "exact_synonyms": [ + "goblet cell of epithelium of stomach" + ] + }, + { + "cl_id": "CL:1000314", + "label": "gastric cardiac gland goblet cell", + "exact_synonyms": [ + "goblet cell of epithelium of gastric cardiac gland" + ] + }, + { + "cl_id": "CL:1000315", + "label": "principal gastric gland goblet cell", + "exact_synonyms": [ + "goblet cell of epithelium of principal gastric gland" + ] + }, + { + "cl_id": "CL:1000317", + "label": "intestinal villus goblet cell", + "exact_synonyms": [ + "goblet cell of epithelium of intestinal villus" + ] + }, + { + "cl_id": "CL:1000320", + "label": "large intestine goblet cell", + "exact_synonyms": [ + "goblet cell of epithelium of large intestine" + ] + }, + { + "cl_id": "CL:1000321", + "label": "large intestine crypt goblet cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000322", + "label": "pancreatic goblet cell", + "exact_synonyms": [ + "goblet cell of epithelium of pancreatic duct" + ] + }, + { + "cl_id": "CL:1000323", + "label": "pyloric gastric gland goblet cell", + "exact_synonyms": [ + "goblet cell of epithelium of pyloric gland" + ] + }, + { + "cl_id": "CL:1000324", + "label": "duodenal goblet cell", + "exact_synonyms": [ + "goblet cell of epithelium proper of duodenum" + ] + }, + { + "cl_id": "CL:1000325", + "label": "jejunal goblet cell", + "exact_synonyms": [ + "goblet cell of epithelium proper of jejunum" + ] + }, + { + "cl_id": "CL:1000326", + "label": "ileal goblet cell", + "exact_synonyms": [ + "goblet cell of epithelium proper of ileum" + ] + }, + { + "cl_id": "CL:1000327", + "label": "appendix goblet cell", + "exact_synonyms": [ + "goblet cell of epithelium proper of appendix" + ] + }, + { + "cl_id": "CL:1000329", + "label": "tracheal goblet cell", + "exact_synonyms": [ + "goblet cell of epithelium of trachea" + ] + }, + { + "cl_id": "CL:1000330", + "label": "serous cell of epithelium of trachea", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000331", + "label": "serous cell of epithelium of bronchus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000332", + "label": "serous cell of epithelium of terminal bronchiole", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000333", + "label": "serous cell of epithelium of lobular bronchiole", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000334", + "label": "enterocyte of epithelium of small intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000335", + "label": "enterocyte of epithelium of intestinal villus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000337", + "label": "enterocyte of epithelium of duodenal gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000338", + "label": "enterocyte of epithelium of crypt of Lieberkuhn of small intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000339", + "label": "enterocyte of epithelium proper of small intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000340", + "label": "enterocyte of epithelium proper of duodenum", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000341", + "label": "enterocyte of epithelium proper of jejunum", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000342", + "label": "enterocyte of epithelium proper of ileum", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000343", + "label": "paneth cell of epithelium of small intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000344", + "label": "paneth cell of epithelium proper of small intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000345", + "label": "paneth cell of epithelium of crypt of Lieberkuhn of small intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000346", + "label": "enterocyte of epithelium proper of large intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000347", + "label": "colonocyte", + "exact_synonyms": [ + "enterocyte of colon" + ] + }, + { + "cl_id": "CL:1000348", + "label": "basal cell of epithelium of trachea", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000349", + "label": "basal cell of epithelium of bronchus", + "exact_synonyms": [ + "basal cell of bronchus" + ] + }, + { + "cl_id": "CL:1000350", + "label": "basal cell of epithelium of terminal bronchiole", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000351", + "label": "basal cell of epithelium of respiratory bronchiole", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000352", + "label": "basal cell of epithelium of lobular bronchiole", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000353", + "label": "microfold cell of epithelium of small intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000354", + "label": "microfold cell of epithelium of intestinal villus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000355", + "label": "microfold cell of epithelium proper of small intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000356", + "label": "microfold cell of epithelium proper of duodenum", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000357", + "label": "microfold cell of epithelium proper of jejunum", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000358", + "label": "microfold cell of epithelium proper of ileum", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000359", + "label": "microfold cell of epithelium proper of appendix", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000360", + "label": "microfold cell of epithelium proper of large intestine", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000361", + "label": "transitional myocyte of interatrial septum", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000362", + "label": "transitional myocyte of interventricular septum", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000363", + "label": "transitional myocyte of atrial branch of anterior internodal tract", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000364", + "label": "transitional myocyte of anterior internodal tract", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000365", + "label": "transitional myocyte of atrial septal branch of anterior internodal tract", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000366", + "label": "transitional myocyte of middle internodal tract", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000367", + "label": "transitional myocyte of posterior internodal tract", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000368", + "label": "transitional myocyte of anterior division of left branch of atrioventricular bundle", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000369", + "label": "transitional myocyte of septal division of left branch of atrioventricular bundle", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000370", + "label": "transitional myocyte of left branch of atrioventricular bundle", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000371", + "label": "transitional myocyte of right branch of atrioventricular bundle", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000372", + "label": "transitional myocyte of atrial part of atrioventricular bundle", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000373", + "label": "transitional myocyte of ventricular part of atrioventricular bundle", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000374", + "label": "transitional myocyte of posterior division of left branch of atrioventricular bundle", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000375", + "label": "myocardial endocrine cell of septal division of left branch of atrioventricular bundle", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000376", + "label": "Purkinje myocyte of interventricular septum", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000377", + "label": "dense-core granulated cell of epithelium of trachea", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000378", + "label": "type 1 vestibular sensory cell of stato-acoustic epithelium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000379", + "label": "type 1 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000380", + "label": "type 1 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000381", + "label": "type 1 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000382", + "label": "type 2 vestibular sensory cell of stato-acoustic epithelium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000383", + "label": "type 2 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000384", + "label": "type 2 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000385", + "label": "type 2 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000391", + "label": "melanocyte of eyelid", + "exact_synonyms": [ + "eyelid melanocyte", + "sebaceous gland of wolff" + ] + }, + { + "cl_id": "CL:1000394", + "label": "myoepithelial cell of intralobular lactiferous duct", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000397", + "label": "endothelial cell of venous sinus of red pulp of spleen", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000398", + "label": "endothelial cell of hepatic sinusoid", + "exact_synonyms": [ + "LSEC", + "endotheliocyte of hepatic sinusoid", + "liver sinusoidal endothelial cell" + ] + }, + { + "cl_id": "CL:1000405", + "label": "epithelial cell of appendix", + "exact_synonyms": [ + "columnar epitheliocyte of appendix", + "epithelial cell of vermiform appendix" + ] + }, + { + "cl_id": "CL:1000409", + "label": "myocyte of sinoatrial node", + "exact_synonyms": [ + "SA nodal myocyte", + "SA node cardiac muscle cell", + "sinoatrial node cell", + "sinoatrial node myocyte", + "sinuatrial node myocyte" + ] + }, + { + "cl_id": "CL:1000410", + "label": "myocyte of atrioventricular node", + "exact_synonyms": [ + "AV nodal myocyte", + "AV node cardiac muscle cell", + "AV node cell", + "atrioventricular node cell", + "atrioventricular node myocyte" + ] + }, + { + "cl_id": "CL:1000411", + "label": "endothelial cell of Peyer's patch", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000412", + "label": "endothelial cell of arteriole", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000413", + "label": "endothelial cell of artery", + "exact_synonyms": [ + "arterial endothelial cell" + ] + }, + { + "cl_id": "CL:1000414", + "label": "endothelial cell of venule", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000415", + "label": "epithelial cell of gallbladder", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000417", + "label": "myoepithelial cell of sweat gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000418", + "label": "myoepithelial cell of lactiferous alveolus", + "exact_synonyms": [ + "basal cell of alveolus of lactiferous gland", + "myoepithelial cell of mammary alveolus" + ] + }, + { + "cl_id": "CL:1000419", + "label": "myoepithelial cell of lactiferous duct", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000420", + "label": "myoepithelial cell of terminal lactiferous duct", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000424", + "label": "chromaffin cell of paraaortic body", + "exact_synonyms": [ + "chromaffin cell of para-aortic body" + ] + }, + { + "cl_id": "CL:1000425", + "label": "chromaffin cell of paraganglion", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000426", + "label": "chromaffin cell of adrenal gland", + "exact_synonyms": [ + "adrenal chromaffin cell" + ] + }, + { + "cl_id": "CL:1000427", + "label": "adrenal cortex chromaffin cell", + "exact_synonyms": [ + "chromaffin cell of adrenal cortex" + ] + }, + { + "cl_id": "CL:1000428", + "label": "stem cell of epidermis", + "exact_synonyms": [ + "epidermal stem cell" + ] + }, + { + "cl_id": "CL:1000432", + "label": "conjunctival epithelial cell", + "exact_synonyms": [ + "epithelial cell of conjunctiva" + ] + }, + { + "cl_id": "CL:1000433", + "label": "epithelial cell of lacrimal canaliculus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000434", + "label": "epithelial cell of external acoustic meatus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000435", + "label": "epithelial cell of lacrimal drainage system", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000436", + "label": "epithelial cell of lacrimal sac", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000437", + "label": "epithelial cell of nasolacrimal duct", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000438", + "label": "epithelial cell of wall of inferior part of anal canal", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000441", + "label": "epithelial cell of viscerocranial mucosa", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000442", + "label": "urothelial cell of trigone of urinary bladder", + "exact_synonyms": [ + "epithelial cell of vesical trigone" + ] + }, + { + "cl_id": "CL:1000443", + "label": "ciliary muscle cell", + "exact_synonyms": [ + "smooth muscle cell of ciliary body" + ] + }, + { + "cl_id": "CL:1000444", + "label": "mesothelial cell of anterior chamber of eye", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000445", + "label": "myoepithelial cell of dilator pupillae", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000447", + "label": "epithelial cell of stratum germinativum of esophagus", + "exact_synonyms": [ + "basal cell of esophageal epithelium" + ] + }, + { + "cl_id": "CL:1000448", + "label": "epithelial cell of sweat gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000449", + "label": "epithelial cell of nephron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000450", + "label": "epithelial cell of glomerular capsule", + "exact_synonyms": [ + "Bowmans capsule epithelial cell", + "epithelial cell of Bowman's capsule" + ] + }, + { + "cl_id": "CL:1000452", + "label": "parietal epithelial cell", + "exact_synonyms": [ + "epithelial cell of parietal layer of glomerular capsule" + ] + }, + { + "cl_id": "CL:1000453", + "label": "epithelial cell of intermediate tubule", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000454", + "label": "kidney collecting duct epithelial cell", + "exact_synonyms": [ + "epithelial cell of renal collecting tubule" + ] + }, + { + "cl_id": "CL:1000456", + "label": "mesothelial cell of parietal peritoneum", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000457", + "label": "mesothelial cell of visceral peritoneum", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000458", + "label": "melanocyte of skin", + "exact_synonyms": [ + "skin melanocyte" + ] + }, + { + "cl_id": "CL:1000465", + "label": "chromaffin cell of ovary", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000466", + "label": "chromaffin cell of right ovary", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000467", + "label": "chromaffin cell of left ovary", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000468", + "label": "myoepithelial cell of acinus of lactiferous gland", + "exact_synonyms": [ + "basal cell of acinus of lactiferous gland" + ] + }, + { + "cl_id": "CL:1000469", + "label": "myoepithelial cell of main lactiferous duct", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000470", + "label": "myoepithelial cell of primary lactiferous duct", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000471", + "label": "myoepithelial cell of secondary lactiferous duct", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000472", + "label": "myoepithelial cell of tertiary lactiferous duct", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000473", + "label": "myoepithelial cell of quarternary lactiferous duct", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000477", + "label": "cardiac pacemaker cell of sinoatrial node", + "exact_synonyms": [ + "cardiac pacemaker cell of sinuatrial node", + "pacemaker cell of sinoatrial node", + "pacemaker cell of sinuatrial node" + ] + }, + { + "cl_id": "CL:1000478", + "label": "transitional myocyte of sinoatrial node", + "exact_synonyms": [ + "transitinal myocyte of sinuatrial node" + ] + }, + { + "cl_id": "CL:1000479", + "label": "Purkinje myocyte of atrioventricular node", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000480", + "label": "transitional myocyte of internodal tract", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000481", + "label": "transitional myocyte of atrioventricular bundle", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000482", + "label": "myocardial endocrine cell of interventricular septum", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000483", + "label": "Purkinje myocyte of internodal tract", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000484", + "label": "Purkinje myocyte of atrioventricular bundle", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000486", + "label": "basal cell of urothelium", + "exact_synonyms": [ + "urothelial basal cell" + ] + }, + { + "cl_id": "CL:1000487", + "label": "smooth muscle cell of prostate", + "exact_synonyms": [ + "smooth muscle fiber of prostate" + ] + }, + { + "cl_id": "CL:1000488", + "label": "cholangiocyte", + "exact_synonyms": [ + "epithelial cell of bile duct" + ] + }, + { + "cl_id": "CL:1000489", + "label": "reticular cell of splenic cord", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000490", + "label": "mesothelial cell of peritoneum", + "exact_synonyms": [ + "peritoneal mesothelial cell" + ] + }, + { + "cl_id": "CL:1000491", + "label": "mesothelial cell of pleura", + "exact_synonyms": [ + "pleural mesothelial cell" + ] + }, + { + "cl_id": "CL:1000492", + "label": "mesothelial cell of parietal pleura", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000493", + "label": "mesothelial cell of visceral pleura", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000494", + "label": "nephron tubule epithelial cell", + "exact_synonyms": [ + "kidney tubule epithelial cell" + ] + }, + { + "cl_id": "CL:1000495", + "label": "small intestine goblet cell", + "exact_synonyms": [ + "goblet cell of epithelium of small intestine", + "goblet cell of small intestine", + "small intestinal goblet cell" + ] + }, + { + "cl_id": "CL:1000497", + "label": "kidney cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000500", + "label": "kidney interstitial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000504", + "label": "kidney medulla cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000505", + "label": "kidney pelvis cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000507", + "label": "kidney tubule cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000510", + "label": "kidney glomerular epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000546", + "label": "kidney medulla collecting duct epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000547", + "label": "kidney inner medulla collecting duct epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000548", + "label": "kidney outer medulla collecting duct epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000549", + "label": "kidney cortex collecting duct epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000550", + "label": "kidney papillary duct principal epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000596", + "label": "inner renal cortex cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000597", + "label": "papillary tips cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000600", + "label": "lower urinary tract cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000601", + "label": "ureteral cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000606", + "label": "kidney nerve cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000612", + "label": "kidney corpuscule cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000615", + "label": "kidney cortex tubule cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000616", + "label": "kidney outer medulla cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000617", + "label": "kidney inner medulla cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000618", + "label": "juxtaglomerular complex cell", + "exact_synonyms": [ + "juxtaglomerulus cell" + ] + }, + { + "cl_id": "CL:1000681", + "label": "kidney cortex interstitial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000682", + "label": "kidney medulla interstitial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000691", + "label": "kidney interstitial myofibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000692", + "label": "kidney interstitial fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000693", + "label": "kidney interstitial fibrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000695", + "label": "kidney interstitial alternatively activated macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000696", + "label": "kidney interstitial inflammatory macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000697", + "label": "kidney interstitial suppressor macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000698", + "label": "kidney resident macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000699", + "label": "kidney resident dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000702", + "label": "kidney pelvis smooth muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000703", + "label": "kidney pelvis urothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000706", + "label": "ureter urothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000708", + "label": "ureter adventitial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000714", + "label": "kidney cortex collecting duct principal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000715", + "label": "kidney cortex collecting duct intercalated cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000716", + "label": "kidney outer medulla collecting duct principal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000717", + "label": "kidney outer medulla collecting duct intercalated cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000718", + "label": "kidney inner medulla collecting duct principal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000719", + "label": "kidney inner medulla collecting duct intercalated cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000720", + "label": "kidney papillary duct intercalated cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000721", + "label": "kidney papillary duct principal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000742", + "label": "glomerular mesangial cell", + "exact_synonyms": [ + "intraglomerular mesangial cell" + ] + }, + { + "cl_id": "CL:1000746", + "label": "glomerular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000768", + "label": "kidney connecting tubule epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000803", + "label": "kidney inner medulla interstitial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000804", + "label": "kidney outer medulla interstitial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000838", + "label": "kidney proximal convoluted tubule epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000839", + "label": "kidney proximal straight tubule epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000849", + "label": "kidney distal convoluted tubule epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000850", + "label": "macula densa epithelial cell", + "exact_synonyms": [ + "macula densa cell" + ] + }, + { + "cl_id": "CL:1000854", + "label": "kidney blood vessel cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000891", + "label": "kidney arterial blood vessel cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000892", + "label": "kidney capillary endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000893", + "label": "kidney venous blood vessel cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000909", + "label": "kidney loop of Henle epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1000979", + "label": "ureter smooth muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001005", + "label": "glomerular capillary endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001006", + "label": "kidney afferent arteriole cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001009", + "label": "kidney efferent arteriole cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001016", + "label": "kidney loop of Henle ascending limb epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001021", + "label": "kidney loop of Henle descending limb epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001033", + "label": "peritubular capillary endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001036", + "label": "vasa recta cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001045", + "label": "kidney cortex artery cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001052", + "label": "kidney cortex vein cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001064", + "label": "kidney artery smooth muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001066", + "label": "kidney arteriole smooth muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001068", + "label": "kidney venous system smooth muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001096", + "label": "kidney afferent arteriole endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001097", + "label": "kidney afferent arteriole smooth muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001099", + "label": "kidney efferent arteriole endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001100", + "label": "kidney efferent arteriole smooth muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001106", + "label": "kidney loop of Henle thick ascending limb epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001107", + "label": "kidney loop of Henle thin ascending limb epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001108", + "label": "kidney loop of Henle medullary thick ascending limb epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001109", + "label": "kidney loop of Henle cortical thick ascending limb epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001111", + "label": "kidney loop of Henle thin descending limb epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001123", + "label": "kidney outer medulla peritubular capillary cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001124", + "label": "kidney cortex peritubular capillary cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001126", + "label": "inner renal medulla vasa recta cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001127", + "label": "outer renal medulla vasa recta cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001131", + "label": "vasa recta ascending limb cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001135", + "label": "arcuate artery cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001138", + "label": "interlobular artery cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001142", + "label": "arcuate vein cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001145", + "label": "interlobular vein cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001209", + "label": "inner medulla vasa recta ascending limb cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001210", + "label": "outer medulla vasa recta ascending limb cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001213", + "label": "arcuate artery endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001214", + "label": "arcuate artery smooth muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001216", + "label": "interlobulary artery endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001217", + "label": "interlobulary artery smooth muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001220", + "label": "arcuate vein endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001221", + "label": "arcuate vein smooth muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001223", + "label": "interlobulary vein endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001224", + "label": "interlobulary vein smooth muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001225", + "label": "kidney collecting duct cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001285", + "label": "vasa recta descending limb cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001286", + "label": "inner medulla vasa recta descending limb cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001287", + "label": "outer medulla vasa recta descending limb cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001318", + "label": "renal interstitial pericyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001319", + "label": "bladder cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001320", + "label": "urethra cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001428", + "label": "bladder urothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001430", + "label": "urethra urothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001431", + "label": "kidney collecting duct principal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001432", + "label": "kidney collecting duct intercalated cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001433", + "label": "epithelial cell of exocrine pancreas", + "exact_synonyms": [ + "exocrine pancreas cell" + ] + }, + { + "cl_id": "CL:1001434", + "label": "olfactory bulb interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001435", + "label": "periglomerular cell", + "exact_synonyms": [ + "glomerular layer cell", + "olfactory bulb (accessory) glomerular layer cell", + "olfactory bulb glomerular layer cell", + "olfactory bulb glomerularal cell", + "olfactory bulb periglomerular cell" + ] + }, + { + "cl_id": "CL:1001436", + "label": "hair-tylotrich neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001437", + "label": "hair-down neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001451", + "label": "sensory neuron of dorsal root ganglion", + "exact_synonyms": [ + "proprioceptive neuron" + ] + }, + { + "cl_id": "CL:1001474", + "label": "medium spiny neuron", + "exact_synonyms": [ + "gamma-aminobutyric acid (GABA)ergic spiny projection neuron", + "gamma-aminobutyric acid ergic spiny projection neuron", + "striatal medium spiny neuron" + ] + }, + { + "cl_id": "CL:1001502", + "label": "mitral cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001503", + "label": "olfactory bulb tufted cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001505", + "label": "parvocellular neurosecretory cell", + "exact_synonyms": [ + "parvocellular neuron", + "parvocellular neurosecretory neuron" + ] + }, + { + "cl_id": "CL:1001509", + "label": "glycinergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001516", + "label": "intestinal enteroendocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001517", + "label": "stomach enteroendocrine cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001561", + "label": "vomeronasal sensory neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001567", + "label": "lung endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001568", + "label": "pulmonary artery endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001569", + "label": "hippocampal interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001571", + "label": "hippocampal pyramidal neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001572", + "label": "colon endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001573", + "label": "nasopharyngeal epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001575", + "label": "uterine cervix squamous cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001576", + "label": "oral mucosa squamous cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001577", + "label": "tonsil squamous cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001578", + "label": "vagina squamous cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001579", + "label": "cerebral cortex glial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001580", + "label": "hippocampal glial cell", + "exact_synonyms": [ + "hippocampus glial cell", + "hippocampus neuroglial cell" + ] + }, + { + "cl_id": "CL:1001581", + "label": "lateral ventricle glial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001582", + "label": "lateral ventricle neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001585", + "label": "appendix glandular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001586", + "label": "mammary gland glandular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001587", + "label": "uterine cervix secretory cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001588", + "label": "colon glandular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001589", + "label": "duodenum secretory cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001590", + "label": "epididymis secretory cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001591", + "label": "oviduct secretory cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001592", + "label": "gallbladder glandular cell", + "exact_synonyms": [ + "gall bladder glandular cell" + ] + }, + { + "cl_id": "CL:1001593", + "label": "parathyroid glandular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001595", + "label": "rectum glandular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001596", + "label": "salivary gland glandular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001597", + "label": "seminal vesicle glandular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001598", + "label": "small intestine secretory cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001599", + "label": "pancreas exocrine glandular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001601", + "label": "adrenal gland glandular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001602", + "label": "cerebral cortex endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001603", + "label": "lung macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001606", + "label": "foreskin keratinocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001607", + "label": "articular chondrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001608", + "label": "foreskin fibroblast", + "exact_synonyms": [ + "BJ fibroblast" + ] + }, + { + "cl_id": "CL:1001609", + "label": "muscle fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001610", + "label": "bone marrow hematopoietic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1001611", + "label": "cerebellar neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:1100001", + "label": "secretory epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000000", + "label": "epidermal melanocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000001", + "label": "peripheral blood mononuclear cell", + "exact_synonyms": [ + "PBMC" + ] + }, + { + "cl_id": "CL:2000002", + "label": "decidual cell", + "exact_synonyms": [ + "decidua cell", + "decidual stromal cell", + "decidualized endometrial stromal cell" + ] + }, + { + "cl_id": "CL:2000004", + "label": "pituitary gland cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000005", + "label": "brain macroglial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000006", + "label": "tonsil germinal center B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000007", + "label": "articular chondrocyte of knee joint", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000008", + "label": "microvascular endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000010", + "label": "dermis blood vessel endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000011", + "label": "dermis lymphatic vessel endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000012", + "label": "fibroblast of pedal digit skin", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000013", + "label": "fibroblast of skin of abdomen", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000014", + "label": "fibroblast of upper leg skin", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000015", + "label": "fibroblast of arm", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000016", + "label": "lung microvascular endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000017", + "label": "fibroblast of peridontal ligament", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000018", + "label": "endothelial cell of coronary artery", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000019", + "label": "compound eye photoreceptor cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000020", + "label": "inner cell mass cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000021", + "label": "sebaceous gland cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000022", + "label": "cardiac septum cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000023", + "label": "spinal cord ventral column interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000024", + "label": "spinal cord medial motor column neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000025", + "label": "spinal cord oligodendrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000027", + "label": "cerebellar basket cell", + "exact_synonyms": [ + "cerebellum basket cell" + ] + }, + { + "cl_id": "CL:2000028", + "label": "cerebellum glutamatergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000029", + "label": "central nervous system neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000030", + "label": "hypothalamus cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000031", + "label": "lateral line ganglion neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000032", + "label": "peripheral nervous system neuron", + "exact_synonyms": [ + "PNS neuron", + "peripheral neuron" + ] + }, + { + "cl_id": "CL:2000033", + "label": "limb basal cell of epidermis", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000034", + "label": "anterior lateral line neuromast hair cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000035", + "label": "anterior lateral line neuromast mantle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000036", + "label": "anterior lateral line neuromast supporting cell", + "exact_synonyms": [ + "anterior lateral line neuromast support cell" + ] + }, + { + "cl_id": "CL:2000037", + "label": "posterior lateral line neuromast hair cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000038", + "label": "posterior lateral line neuromast mantle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000039", + "label": "posterior lateral line neuromast supporting cell", + "exact_synonyms": [ + "posterior lateral line neuromast support cell" + ] + }, + { + "cl_id": "CL:2000040", + "label": "bladder microvascular endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000041", + "label": "dermis microvascular lymphatic vessel endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000042", + "label": "embryonic fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000043", + "label": "brain pericyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000044", + "label": "brain microvascular endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000045", + "label": "foreskin melanocyte", + "exact_synonyms": [ + "melanocyte of foreskin" + ] + }, + { + "cl_id": "CL:2000046", + "label": "ventricular cardiac muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000047", + "label": "brainstem motor neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000048", + "label": "anterior horn motor neuron", + "exact_synonyms": [ + "anterior horn cell", + "ventral horn of spinal cord spinal cord motor neuron" + ] + }, + { + "cl_id": "CL:2000049", + "label": "primary motor cortex pyramidal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000051", + "label": "splenic fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000052", + "label": "umbilical artery endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000053", + "label": "splenic endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000054", + "label": "hepatic pit cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000055", + "label": "liver dendritic cell", + "exact_synonyms": [ + "hepatic dendritic cell" + ] + }, + { + "cl_id": "CL:2000056", + "label": "Meynert cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000057", + "label": "femoral osteoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000058", + "label": "calvarial osteoblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000059", + "label": "prostate gland microvascular endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000060", + "label": "placental villous trophoblast", + "exact_synonyms": [ + "vCTB", + "villous cytotrophoblast" + ] + }, + { + "cl_id": "CL:2000061", + "label": "placental amniotic mesenchymal stromal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000062", + "label": "placental villus capillary endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000063", + "label": "ovarian fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000064", + "label": "ovarian surface epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000065", + "label": "ovarian microvascular endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000066", + "label": "cardiac ventricle fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000067", + "label": "cardiac atrium fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000068", + "label": "pericardium fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000069", + "label": "gallbladder fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000070", + "label": "optic choroid fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000071", + "label": "mammary microvascular endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000072", + "label": "adipose microvascular endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000073", + "label": "migratory cardiac neural crest cell", + "exact_synonyms": [ + "cardiac neural crest cell" + ] + }, + { + "cl_id": "CL:2000074", + "label": "splenocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000075", + "label": "anterior visceral endoderm cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000076", + "label": "hindlimb stylopod vein endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000077", + "label": "skeletal muscle tissue of pectoralis major striated muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000078", + "label": "placental pericyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000079", + "label": "mesenchymal stem cell of femoral bone marrow", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000080", + "label": "mesenchymal stem cell of abdominal adipose tissue", + "exact_synonyms": [ + "mesenchymal stem cell of abdominal adipose" + ] + }, + { + "cl_id": "CL:2000081", + "label": "melanocyte of skin of face", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000083", + "label": "hair follicle dermal papilla cell of scalp", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000084", + "label": "conjunctiva goblet cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000085", + "label": "mononuclear cell of umbilical cord", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000086", + "label": "neocortex basket cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000087", + "label": "dentate gyrus of hippocampal formation basket cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000088", + "label": "Ammon's horn basket cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000089", + "label": "dentate gyrus granule cell", + "exact_synonyms": [ + "dentate gyrus of hippocampal formation granule cell" + ] + }, + { + "cl_id": "CL:2000090", + "label": "dentate gyrus of hippocampal formation stellate cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000091", + "label": "endometrial microvascular endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000092", + "label": "hair follicular keratinocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000093", + "label": "bronchus fibroblast of lung", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000094", + "label": "nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000095", + "label": "cord blood hematopoietic stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000096", + "label": "fibroblast of the reticular layer of dermis", + "exact_synonyms": [] + }, + { + "cl_id": "CL:2000097", + "label": "midbrain dopaminergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:3000000", + "label": "ciliated epithelial cell of esophagus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:3000001", + "label": "Hofbauer cell", + "exact_synonyms": [ + "fetal Hofbauer cell" + ] + }, + { + "cl_id": "CL:3000002", + "label": "sympathetic noradrenergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:3000003", + "label": "sympathetic cholinergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:3000004", + "label": "peripheral sensory neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4006000", + "label": "fibroblast of breast", + "exact_synonyms": [ + "breast fibroblast" + ] + }, + { + "cl_id": "CL:4006001", + "label": "fibroblast of skin of scalp", + "exact_synonyms": [ + "skin of scalp fibroblast" + ] + }, + { + "cl_id": "CL:4023000", + "label": "beta motor neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023001", + "label": "static beta motor neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023002", + "label": "dynamic beta motor neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023003", + "label": "nuclear chain fiber", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023004", + "label": "nuclear bag fiber", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023005", + "label": "dynamic nuclear bag fiber", + "exact_synonyms": [ + "bag1 fiber", + "nuclear bag1 intrafusal fiber" + ] + }, + { + "cl_id": "CL:4023006", + "label": "static nuclear bag fiber", + "exact_synonyms": [ + "bag2 fiber", + "nuclear bag2 intrafusal fiber" + ] + }, + { + "cl_id": "CL:4023007", + "label": "L2/3 bipolar VIP GABAergic interneuron (Mmus)", + "exact_synonyms": [ + "L2/3 bipolar Vip (Mus musculus)" + ] + }, + { + "cl_id": "CL:4023008", + "label": "intratelencephalic-projecting glutamatergic cortical neuron", + "exact_synonyms": [ + "IT neuron" + ] + }, + { + "cl_id": "CL:4023009", + "label": "extratelencephalic-projecting glutamatergic cortical neuron", + "exact_synonyms": [ + "ET projecting neuron" + ] + }, + { + "cl_id": "CL:4023010", + "label": "alpha7 GABAergic cortical interneuron (Mmus)", + "exact_synonyms": [ + "A7 cell (Mus musculus)" + ] + }, + { + "cl_id": "CL:4023011", + "label": "lamp5 GABAergic interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023012", + "label": "near-projecting glutamatergic cortical neuron", + "exact_synonyms": [ + "NP neuron" + ] + }, + { + "cl_id": "CL:4023013", + "label": "corticothalamic-projecting glutamatergic cortical neuron", + "exact_synonyms": [ + "CT projecting neuron" + ] + }, + { + "cl_id": "CL:4023014", + "label": "L5 VIP GABAergic interneuron (Mmus)", + "exact_synonyms": [ + "L5 VIP (Mus musculus)" + ] + }, + { + "cl_id": "CL:4023015", + "label": "sncg GABAergic interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023016", + "label": "VIP GABAergic interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023017", + "label": "sst GABAergic interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023018", + "label": "pvalb GABAergic interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023019", + "label": "L5/6 cck, VIP GABAergic interneuron (Mmus)", + "exact_synonyms": [ + "L5/6 CCK Vip (Mus musculus)" + ] + }, + { + "cl_id": "CL:4023020", + "label": "dynamic gamma motor neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023021", + "label": "static gamma motor neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023022", + "label": "canopy lamp5 GABAergic cortical interneuron (Mmus)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023023", + "label": "L5,6 neurogliaform lamp5 GABAergic interneuron (Mmus)", + "exact_synonyms": [ + "L5,6 NGC Lamp5 (Mus musculus)" + ] + }, + { + "cl_id": "CL:4023024", + "label": "neurogliaform lamp5 GABAergic cortical interneuron (Mmus)", + "exact_synonyms": [ + "NGC Lamp5 (Mus musculus)" + ] + }, + { + "cl_id": "CL:4023025", + "label": "long-range projecting sst GABAergic cortical interneuron (Mmus)", + "exact_synonyms": [ + "LP SST (Mus musculus)" + ] + }, + { + "cl_id": "CL:4023026", + "label": "direct pathway medium spiny neuron", + "exact_synonyms": [ + "dopamine 1 medium spiny neuron" + ] + }, + { + "cl_id": "CL:4023027", + "label": "L5 sst T-Martinotti interneuron (Mmus)", + "exact_synonyms": [ + "L5 T Martinotti SST (Mus musculus)" + ] + }, + { + "cl_id": "CL:4023028", + "label": "L5 non-Martinotti sst GABAergic interneuron (Mmus)", + "exact_synonyms": [ + "L5 non-Martinotti SST (Mus musculus)" + ] + }, + { + "cl_id": "CL:4023029", + "label": "indirect pathway medium spiny neuron", + "exact_synonyms": [ + "D2-MSN", + "dopamine 2 medium spiny neuron", + "iSPN" + ] + }, + { + "cl_id": "CL:4023030", + "label": "L2/3/5 fan Martinotti sst GABAergic interneuron (Mmus)", + "exact_synonyms": [ + "L2/3/5 fan Martinotti SST (Mus musculus)" + ] + }, + { + "cl_id": "CL:4023031", + "label": "L4 sst Martinotti interneuron (Mmus)", + "exact_synonyms": [ + "L4 SST (Mus musculus)" + ] + }, + { + "cl_id": "CL:4023032", + "label": "ON retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023033", + "label": "OFF retinal ganglion cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023035", + "label": "lateral ganglionic eminence derived neuron", + "exact_synonyms": [ + "LGE-derived neuron" + ] + }, + { + "cl_id": "CL:4023036", + "label": "pvalb chandelier GABAergic interneuron", + "exact_synonyms": [ + "chandelier PV", + "chandelier cell" + ] + }, + { + "cl_id": "CL:4023038", + "label": "L6b glutamatergic cortical neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023039", + "label": "amygdala excitatory neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023040", + "label": "L2/3-6 intratelencephalic projecting glutamatergic neuron", + "exact_synonyms": [ + "L2/3-6 IT projecting neuron" + ] + }, + { + "cl_id": "CL:4023041", + "label": "L5 extratelencephalic projecting glutamatergic cortical neuron", + "exact_synonyms": [ + "Pyramidal tract-like (PT-l)", + "burst-firing layer 5 neuron", + "thick-tufted layer 5 (TTL5) pyramidal neuron" + ] + }, + { + "cl_id": "CL:4023042", + "label": "L6 corticothalamic-projecting glutamatergic cortical neuron", + "exact_synonyms": [ + "L6 CT" + ] + }, + { + "cl_id": "CL:4023043", + "label": "L5/6 near-projecting glutamatergic neuron of the primary motor cortex", + "exact_synonyms": [ + "L5/6 NP M1", + "L5/6 NP MOp" + ] + }, + { + "cl_id": "CL:4023044", + "label": "non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex", + "exact_synonyms": [ + "non-MY ET M1", + "non-MY ET MOp (Mus)" + ] + }, + { + "cl_id": "CL:4023045", + "label": "medulla-projecting glutamatergic neuron of the primary motor cortex", + "exact_synonyms": [ + "MY ET M1", + "MY ET MOp", + "medulla-projecting extratelencephalic-projecting glutamatergic neuron of the primary motor cortex" + ] + }, + { + "cl_id": "CL:4023046", + "label": "L6b glutamatergic neuron of the primary motor cortex", + "exact_synonyms": [ + "L6b subplate glutamatergic neuron of the primary motor cortex" + ] + }, + { + "cl_id": "CL:4023047", + "label": "L2/3 intratelencephalic projecting glutamatergic neuron of the primary motor cortex", + "exact_synonyms": [ + "L2/3 IT M1", + "L2/3 IT MOp" + ] + }, + { + "cl_id": "CL:4023048", + "label": "L4/5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex", + "exact_synonyms": [ + "L4/5 IT M1", + "L4/5 IT MOp" + ] + }, + { + "cl_id": "CL:4023049", + "label": "L5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex", + "exact_synonyms": [ + "L5 IT M1", + "L5 IT MOp" + ] + }, + { + "cl_id": "CL:4023050", + "label": "L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex", + "exact_synonyms": [ + "L6 IT M1", + "L6 IT MOp" + ] + }, + { + "cl_id": "CL:4023051", + "label": "vascular leptomeningeal cell", + "exact_synonyms": [ + "VLMC" + ] + }, + { + "cl_id": "CL:4023052", + "label": "Betz upper motor neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023053", + "label": "spinal interneuron synapsing Betz cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023054", + "label": "mesothelial fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023055", + "label": "corticothalamic VAL/VM projecting glutamatergic neuron of the primary motor cortex", + "exact_synonyms": [ + "CT VAL/VM M1", + "CT VAL/VM MOp" + ] + }, + { + "cl_id": "CL:4023056", + "label": "vascular leptomeningeal cell (Mmus)", + "exact_synonyms": [ + "VLMC (Mus musculus)" + ] + }, + { + "cl_id": "CL:4023057", + "label": "cerebellar inhibitory GABAergic interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023058", + "label": "mesothelial fibroblast of the leptomeninx", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023059", + "label": "committed oligodendrocyte precursor", + "exact_synonyms": [ + "COP", + "differentiation-committed oligodendrocyte precursor" + ] + }, + { + "cl_id": "CL:4023060", + "label": "hippocampal CA1-3 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023061", + "label": "hippocampal CA4 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023062", + "label": "dentate gyrus neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023063", + "label": "medial ganglionic eminence derived interneuron", + "exact_synonyms": [ + "MGE interneuron" + ] + }, + { + "cl_id": "CL:4023064", + "label": "caudal ganglionic eminence derived interneuron", + "exact_synonyms": [ + "caudal ganglionic eminence derived GABAergic interneuron" + ] + }, + { + "cl_id": "CL:4023065", + "label": "meis2 expressing cortical GABAergic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023066", + "label": "horizontal pyramidal neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023068", + "label": "thalamic excitatory neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023069", + "label": "medial ganglionic eminence derived GABAergic interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023071", + "label": "L5/6 cck GABAergic interneuron (Mmus)", + "exact_synonyms": [ + "L5/6 CCK (Mus musculus)" + ] + }, + { + "cl_id": "CL:4023072", + "label": "brain vascular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023074", + "label": "mammillary body neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023075", + "label": "L6 th sst GABAergic interneuron (Mmus)", + "exact_synonyms": [ + "L6 Th+ SST (Mus musculus)", + "L6 tyrosine hydroxylase positive sst expressing GABAergic cortical interneuron (Mus musculus)" + ] + }, + { + "cl_id": "CL:4023076", + "label": "Martinotti neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023077", + "label": "bitufted neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023079", + "label": "midbrain-derived inhibitory neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023080", + "label": "stellate L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)", + "exact_synonyms": [ + "stellate L6 IT MOp (Mus musculus)" + ] + }, + { + "cl_id": "CL:4023081", + "label": "inverted L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)", + "exact_synonyms": [ + "inverted L6 IT MOp (Mus musculus)" + ] + }, + { + "cl_id": "CL:4023086", + "label": "T Martinotti neuron", + "exact_synonyms": [ + "T-shaped Martinotti neuron" + ] + }, + { + "cl_id": "CL:4023087", + "label": "fan Martinotti neuron", + "exact_synonyms": [ + "fanning-out Martinotti neuron" + ] + }, + { + "cl_id": "CL:4023088", + "label": "large basket cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023089", + "label": "nest basket cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023090", + "label": "small basket cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023092", + "label": "inverted pyramidal neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023093", + "label": "stellate pyramidal neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023094", + "label": "tufted pyramidal neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023095", + "label": "untufted pyramidal neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023097", + "label": "arachnoid barrier cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023107", + "label": "reticulospinal neuron", + "exact_synonyms": [ + "RSN" + ] + }, + { + "cl_id": "CL:4023108", + "label": "oxytocin-secreting magnocellular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023109", + "label": "vasopressin-secreting magnocellular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023110", + "label": "amygdala pyramidal neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023111", + "label": "cerebral cortex pyramidal neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023112", + "label": "vestibular afferent neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023113", + "label": "bouton vestibular afferent neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023114", + "label": "calyx vestibular afferent neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023115", + "label": "type 1 spiral ganglion neuron", + "exact_synonyms": [ + "type I spiral ganglion cell" + ] + }, + { + "cl_id": "CL:4023116", + "label": "type 2 spiral ganglion neuron", + "exact_synonyms": [ + "type II spiral ganglion cell" + ] + }, + { + "cl_id": "CL:4023118", + "label": "L5/6 non-Martinotti sst GABAergic interneuron (Mmus)", + "exact_synonyms": [ + "L5/6 non-Martinotti SST (Mus musculus)", + "L5/6 non-Martinotti morphology sst expressing GABAergic cortical interneuron (Mus musculus)" + ] + }, + { + "cl_id": "CL:4023119", + "label": "displaced amacrine cell", + "exact_synonyms": [ + "dACs", + "inverted amacrine cell" + ] + }, + { + "cl_id": "CL:4023120", + "label": "cochlea auditory hair cell", + "exact_synonyms": [ + "cochlear hair cell" + ] + }, + { + "cl_id": "CL:4023121", + "label": "sst chodl GABAergic interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023122", + "label": "oxytocin receptor sst GABAergic cortical interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023123", + "label": "hypothalamus kisspeptin neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023124", + "label": "dentate gyrus kisspeptin neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023125", + "label": "KNDy neuron", + "exact_synonyms": [ + "kisspeptin, neurokinin B and dynorphin expressing neuron" + ] + }, + { + "cl_id": "CL:4023127", + "label": "arcuate nucleus of hypothalamus KNDy neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023128", + "label": "rostral periventricular region of the third ventricle KNDy neuron", + "exact_synonyms": [ + "RP3V KNDy neuron" + ] + }, + { + "cl_id": "CL:4023129", + "label": "retinoblast", + "exact_synonyms": [ + "retinal stem cell" + ] + }, + { + "cl_id": "CL:4023130", + "label": "kisspeptin neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023154", + "label": "myelinating glial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023158", + "label": "octopus cell of the mammalian cochlear nucleus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023159", + "label": "double bouquet cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023160", + "label": "cartwheel cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023161", + "label": "unipolar brush cell", + "exact_synonyms": [ + "neuronal brush cell" + ] + }, + { + "cl_id": "CL:4023162", + "label": "bushy cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023163", + "label": "spherical bushy cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023164", + "label": "globular bushy cell", + "exact_synonyms": [ + "GBC" + ] + }, + { + "cl_id": "CL:4023168", + "label": "somatosensory neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023169", + "label": "trigeminal neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023170", + "label": "trigeminal sensory neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023171", + "label": "trigeminal motor neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023181", + "label": "hypendymal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023187", + "label": "koniocellular cell", + "exact_synonyms": [ + "K cell" + ] + }, + { + "cl_id": "CL:4023188", + "label": "midget ganglion cell of retina", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4023189", + "label": "parasol ganglion cell of retina", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4028001", + "label": "pulmonary capillary endothelial cell", + "exact_synonyms": [ + "lung capillary endothelial cell" + ] + }, + { + "cl_id": "CL:4028002", + "label": "alveolar capillary type 1 endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4028003", + "label": "alveolar capillary type 2 endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4028004", + "label": "alveolar type 1 fibroblast cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4028006", + "label": "alveolar adventitial fibroblast", + "exact_synonyms": [ + "alveolar type 2 fibroblast cell" + ] + }, + { + "cl_id": "CL:4029001", + "label": "gamete-nursing cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4029002", + "label": "germline-derived nurse cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4029003", + "label": "somatic nurse-like cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030000", + "label": "choroidal melanocyte", + "exact_synonyms": [ + "uveal melanocyte" + ] + }, + { + "cl_id": "CL:4030001", + "label": "stromal cell of thymus", + "exact_synonyms": [ + "thymic stromal cell" + ] + }, + { + "cl_id": "CL:4030002", + "label": "effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated", + "exact_synonyms": [ + "TEMRA cell", + "terminally differentiated effector memory CD45RA+ T cells", + "terminally differentiated effector memory cells re-expressing CD45RA" + ] + }, + { + "cl_id": "CL:4030003", + "label": "interstitial cell of thymus", + "exact_synonyms": [ + "thymic interstitial cell" + ] + }, + { + "cl_id": "CL:4030004", + "label": "thymic nurse cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030005", + "label": "kidney collecting duct beta-intercalated cell", + "exact_synonyms": [ + "B-IC", + "kidney collecting duct intercalated cell type B" + ] + }, + { + "cl_id": "CL:4030006", + "label": "fallopian tube secretory epithelial cell", + "exact_synonyms": [ + "uterine tube secretory epithelial cell" + ] + }, + { + "cl_id": "CL:4030007", + "label": "fallopian tube multiciliated epithelial cell", + "exact_synonyms": [ + "fallopian tube ciliated cell", + "fallopian tube multiciliated cell", + "uterine tube ciliated epithelial cell" + ] + }, + { + "cl_id": "CL:4030008", + "label": "pronephric podocyte", + "exact_synonyms": [ + "pronephric glomerular visceral epithelial cell" + ] + }, + { + "cl_id": "CL:4030009", + "label": "epithelial cell of proximal tubule segment 1", + "exact_synonyms": [ + "epithelial cell of segment 1 of proximal tubule" + ] + }, + { + "cl_id": "CL:4030010", + "label": "epithelial cell of proximal tubule segment 2", + "exact_synonyms": [ + "epithelial cell of segment 2 of proximal tubule" + ] + }, + { + "cl_id": "CL:4030011", + "label": "epithelial cell of proximal tubule segment 3", + "exact_synonyms": [ + "epithelial cell of segment 3 of proximal tubule" + ] + }, + { + "cl_id": "CL:4030012", + "label": "kidney loop of Henle short descending thin limb epithelial cell", + "exact_synonyms": [ + "epithelial cell of the descending thin limb of the short loop of Henle" + ] + }, + { + "cl_id": "CL:4030013", + "label": "kidney loop of Henle long descending thin limb outer medulla epithelial cell", + "exact_synonyms": [ + "epithelial cell of the outer medulla of the long descending limb of the loop of Henle" + ] + }, + { + "cl_id": "CL:4030014", + "label": "kidney loop of Henle long descending thin limb inner medulla epithelial cell", + "exact_synonyms": [ + "epithelial cell of the inner medulla of the long descending limb of the loop of Henle" + ] + }, + { + "cl_id": "CL:4030015", + "label": "kidney collecting duct alpha-intercalated cell", + "exact_synonyms": [ + "kidney collecting duct intercalated cell type A" + ] + }, + { + "cl_id": "CL:4030016", + "label": "epithelial cell of early distal convoluted tubule", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030017", + "label": "epithelial cell of late distal convoluted tubule", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030018", + "label": "kidney connecting tubule principal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030019", + "label": "kidney connecting tubule intercalated cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030020", + "label": "kidney connecting tubule alpha-intercalated cell", + "exact_synonyms": [ + "connecting tubule A-IC", + "kidney connecting tubule intercalated cell type A" + ] + }, + { + "cl_id": "CL:4030021", + "label": "kidney connecting tubule beta-intercalated cell", + "exact_synonyms": [ + "connecting tubule B-IC", + "kidney connecting tubule intercalated cell type B" + ] + }, + { + "cl_id": "CL:4030022", + "label": "renal medullary fibroblast", + "exact_synonyms": [ + "kidney medullary fibroblast" + ] + }, + { + "cl_id": "CL:4030023", + "label": "respiratory tract hillock cell", + "exact_synonyms": [ + "hillock cell of respiratory tract", + "respiratory hillock cell" + ] + }, + { + "cl_id": "CL:4030024", + "label": "hillock cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030025", + "label": "renal cortical fibroblast", + "exact_synonyms": [ + "kidney cortical fibroblast" + ] + }, + { + "cl_id": "CL:4030026", + "label": "BEST4+ enterocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030027", + "label": "GABAergic amacrine cell", + "exact_synonyms": [ + "amacrine cell, GABAergic" + ] + }, + { + "cl_id": "CL:4030028", + "label": "glycinergic amacrine cell", + "exact_synonyms": [ + "amacrine cell, glycinergic" + ] + }, + { + "cl_id": "CL:4030029", + "label": "blood lymphocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030030", + "label": "peripheral blood lymphocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030031", + "label": "interstitial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030032", + "label": "valve interstitial cell", + "exact_synonyms": [ + "VIC", + "cardiac valve interstitial cell", + "valvular interstitial cell" + ] + }, + { + "cl_id": "CL:4030033", + "label": "valve endothelial cell", + "exact_synonyms": [ + "VEC", + "valvular endothelial cell" + ] + }, + { + "cl_id": "CL:4030034", + "label": "respiratory tract multiciliated cell", + "exact_synonyms": [ + "ciliated cell of the respiratory tract", + "respiratory ciliated cell", + "respiratory multiciliated cell" + ] + }, + { + "cl_id": "CL:4030035", + "label": "dental pulp stem cell", + "exact_synonyms": [ + "DPSC" + ] + }, + { + "cl_id": "CL:4030036", + "label": "early spermatid", + "exact_synonyms": [ + "round spermatid" + ] + }, + { + "cl_id": "CL:4030037", + "label": "late spermatid", + "exact_synonyms": [ + "elongated spermatid" + ] + }, + { + "cl_id": "CL:4030038", + "label": "CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030039", + "label": "von Economo neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030040", + "label": "endometrial multiciliated epithelial cell", + "exact_synonyms": [ + "ciliated cell of the endometrium", + "endometrial ciliated epithelial cell", + "endometrium ciliated epithelial cell" + ] + }, + { + "cl_id": "CL:4030041", + "label": "luminal endometrial multiciliated epithelial cell", + "exact_synonyms": [ + "luminal endometrial ciliated epithelial cell" + ] + }, + { + "cl_id": "CL:4030042", + "label": "glandular endometrial multiciliated epithelial cell", + "exact_synonyms": [ + "glandular endometrial ciliated epithelial cell" + ] + }, + { + "cl_id": "CL:4030043", + "label": "matrix D1 medium spiny neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030044", + "label": "has_not_completed", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030045", + "label": "lacks_part", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030046", + "label": "lacks_plasma_membrane_part", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030047", + "label": "matrix D2 medium spiny neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030048", + "label": "striosomal D1 medium spiny neuron", + "exact_synonyms": [ + "striosome D1 medium spiny neuron" + ] + }, + { + "cl_id": "CL:4030049", + "label": "striosomal D2 medium spiny neuron", + "exact_synonyms": [ + "striosome D2 medium spiny neuron" + ] + }, + { + "cl_id": "CL:4030050", + "label": "D1/D2-hybrid medium spiny neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030051", + "label": "nucleus accumbens shell and olfactory tubercle D1 medium spiny neuron", + "exact_synonyms": [ + "NAc shell and OT D1 medium spiny neuron" + ] + }, + { + "cl_id": "CL:4030052", + "label": "nucleus accumbens shell and olfactory tubercle D2 medium spiny neuron", + "exact_synonyms": [ + "NAc shell and OT D2 medium spiny neuron" + ] + }, + { + "cl_id": "CL:4030053", + "label": "Islands of Calleja granule cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030054", + "label": "D1-NUDAP medium spiny neuron", + "exact_synonyms": [ + "RXFP1-positive interface island D1-medium spiny neuron" + ] + }, + { + "cl_id": "CL:4030055", + "label": "intermediate cell of urothelium", + "exact_synonyms": [ + "urothelial intermediate cell" + ] + }, + { + "cl_id": "CL:4030056", + "label": "umbrella cell of urothelium", + "exact_synonyms": [ + "facet cell of urothelium", + "superficial cell of urothelium" + ] + }, + { + "cl_id": "CL:4030057", + "label": "eccentric medium spiny neuron", + "exact_synonyms": [ + "eccentric spiny projection neuron" + ] + }, + { + "cl_id": "CL:4030058", + "label": "TCR-positive macrophage", + "exact_synonyms": [ + "T cell receptor positive macrophage", + "TCR+ macrophage" + ] + }, + { + "cl_id": "CL:4030059", + "label": "L2/3 intratelencephalic projecting glutamatergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030060", + "label": "L2 intratelencephalic projecting glutamatergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030061", + "label": "L3 intratelencephalic projecting glutamatergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030062", + "label": "L4/5 intratelencephalic projecting glutamatergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030063", + "label": "L4 intratelencephalic projecting glutamatergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030064", + "label": "L5 intratelencephalic projecting glutamatergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030065", + "label": "L6 intratelencephalic projecting glutamatergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030066", + "label": "ureteric bud cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030067", + "label": "L5/6 near-projecting glutamatergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4030068", + "label": "L6 intratelencephalic projecting Car3 glutamatergic neuron", + "exact_synonyms": [ + "L6 IT Car3 glutamatergic neuron" + ] + }, + { + "cl_id": "CL:4032000", + "label": "club-like cell of the urethral epithelium", + "exact_synonyms": [ + "club cell of the urethra epithelium", + "club-like cell of the prostatic urethra epithelium", + "prostate club cell" + ] + }, + { + "cl_id": "CL:4032001", + "label": "reelin GABAergic cortical interneuron", + "exact_synonyms": [ + "rln GABAergic cortical interneuron" + ] + }, + { + "cl_id": "CL:4033000", + "label": "endothelial cell of venule of lymph node", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033001", + "label": "endothelial cell of arteriole of lymph node", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033002", + "label": "neuroendocrine cell of epithelium of crypt of Lieberkuhn", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033003", + "label": "myoepithelial cell of bronchus submucosal gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033004", + "label": "smooth muscle cell of taenia coli", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033005", + "label": "serous secreting cell of bronchus submucosal gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033006", + "label": "endothelial cell of efferent lymphatic vessel", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033007", + "label": "brush cell of epithelium of lobar bronchus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033008", + "label": "vein endothelial cell of respiratory system", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033009", + "label": "goblet cell of epithelium of lobar bronchus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033010", + "label": "neuroendocrine cell of epithelium of lobar bronchus", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033011", + "label": "smooth muscle cell of large intestine smooth muscle circular layer", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033012", + "label": "smooth muscle cell of large intestine smooth muscle longitudinal layer", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033013", + "label": "suprabasal keratinocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033014", + "label": "peg cell", + "exact_synonyms": [ + "FTE stem-like cell", + "FTESC", + "fallopian tube epithelial stem-like cell", + "intercalary cell" + ] + }, + { + "cl_id": "CL:4033015", + "label": "retinal astrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033016", + "label": "secondary crest myofibroblast", + "exact_synonyms": [ + "secondary-crest myofibroblast" + ] + }, + { + "cl_id": "CL:4033017", + "label": "bronchiolar smooth muscle cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033018", + "label": "lung megakaryocyte", + "exact_synonyms": [ + "lung resident megakaryocyte", + "lung-resident megakaryocyte" + ] + }, + { + "cl_id": "CL:4033019", + "label": "ON-blue cone bipolar cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033020", + "label": "mucus secreting cell of trachea gland", + "exact_synonyms": [ + "tracheal submucosal gland mucous cell" + ] + }, + { + "cl_id": "CL:4033021", + "label": "myoepithelial cell of trachea gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033022", + "label": "mucus secreting cell of bronchus submucosal gland", + "exact_synonyms": [ + "bronchial gland mucous cell" + ] + }, + { + "cl_id": "CL:4033023", + "label": "airway submucosal gland collecting duct epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033024", + "label": "airway submucosal gland duct basal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033025", + "label": "perichondrial fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033026", + "label": "lung perichondrial fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033027", + "label": "diffuse bipolar 1 cell", + "exact_synonyms": [ + "Diffuse Bipolar Cell Type DB1" + ] + }, + { + "cl_id": "CL:4033028", + "label": "diffuse bipolar 2 cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033029", + "label": "diffuse bipolar 3a cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033030", + "label": "diffuse bipolar 3b cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033031", + "label": "diffuse bipolar 4 cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033032", + "label": "diffuse bipolar 6 cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033033", + "label": "flat midget bipolar cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033034", + "label": "invaginating midget bipolar cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033035", + "label": "giant bipolar cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033036", + "label": "OFFx cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033037", + "label": "mucus secreting cell of tracheobronchial tree submucosal gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033038", + "label": "lung resident memory CD4-positive, alpha-beta T cell", + "exact_synonyms": [ + "lung resident memory CD4 T cell" + ] + }, + { + "cl_id": "CL:4033039", + "label": "lung resident memory CD8-positive, alpha-beta T cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033040", + "label": "lung resident memory CD8-positive, CD103-positive, alpha-beta T cell", + "exact_synonyms": [ + "lung TRM CD8-positive, CD103-positive cell", + "lung TRM CD8-positive, integrin alpha E-positive cell", + "lung resident memory CD8-positive CD103-positive, alpha-beta T cell" + ] + }, + { + "cl_id": "CL:4033041", + "label": "CCL3-positive alveolar macrophage", + "exact_synonyms": [ + "alveolar macrophage CCL3-positive" + ] + }, + { + "cl_id": "CL:4033042", + "label": "metallothionein-positive alveolar macrophage", + "exact_synonyms": [ + "alveolar macrophage MT-positive", + "alveolar macrophage metallothionein-positive" + ] + }, + { + "cl_id": "CL:4033043", + "label": "lung interstitial macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033044", + "label": "deuterosomal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033045", + "label": "lung migratory dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033046", + "label": "ON midget ganglion cell", + "exact_synonyms": [ + "ON-midget RGC", + "ON-midget cell", + "inner stratifying midget cell" + ] + }, + { + "cl_id": "CL:4033047", + "label": "OFF midget ganglion cell", + "exact_synonyms": [ + "OFF-midget RGC", + "OFF-midget cell", + "outer stratifying midget cell" + ] + }, + { + "cl_id": "CL:4033048", + "label": "respiratory tract suprabasal cell", + "exact_synonyms": [ + "respiratory parabasal cell", + "respiratory suprabasal cell", + "respiratory suprabasal progenitor cell" + ] + }, + { + "cl_id": "CL:4033049", + "label": "taste receptor cell of tongue", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033050", + "label": "catecholaminergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033051", + "label": "OFF parasol ganglion cell", + "exact_synonyms": [ + "OFF-parasol RGC", + "OFF-parasol retinal ganglion cell", + "outer parasol cell" + ] + }, + { + "cl_id": "CL:4033052", + "label": "ON parasol ganglion cell", + "exact_synonyms": [ + "ON-parasol RGC", + "ON-parasol retinal ganglion cell", + "inner parasol cell" + ] + }, + { + "cl_id": "CL:4033053", + "label": "small bistratified retinal ganglion cell", + "exact_synonyms": [ + "small bistratified cell", + "small bistratified cell, blue-ON/yellow-OFF ganglion cell" + ] + }, + { + "cl_id": "CL:4033054", + "label": "perivascular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033055", + "label": "airway submucosal gland duct multiciliated cell", + "exact_synonyms": [ + "airway submucosal gland duct ciliated cell" + ] + }, + { + "cl_id": "CL:4033056", + "label": "onychocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033057", + "label": "luminal adaptive secretory precursor cell of mammary gland", + "exact_synonyms": [ + "ER-negative luminal alveolar progenitor" + ] + }, + { + "cl_id": "CL:4033058", + "label": "luminal hormone-sensing cell of mammary gland", + "exact_synonyms": [ + "ER-positive luminal hormone-sensor cell" + ] + }, + { + "cl_id": "CL:4033059", + "label": "lactocyte type 1", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033060", + "label": "lactocyte type 2", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033061", + "label": "endothelial cell of central vein of liver", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033062", + "label": "interstitial extravillous trophoblast cell", + "exact_synonyms": [ + "invasive interstitial extravillous trophoblast cell" + ] + }, + { + "cl_id": "CL:4033063", + "label": "endovascular extravillous trophoblast cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033064", + "label": "uterine resident macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033065", + "label": "preplasmablast", + "exact_synonyms": [ + "pre-plasmablast", + "preplasmablastic cell" + ] + }, + { + "cl_id": "CL:4033066", + "label": "pre-granulosa cell", + "exact_synonyms": [ + "ovarian pregranulosa cell", + "pregranulosa cell" + ] + }, + { + "cl_id": "CL:4033067", + "label": "mural granulosa cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033068", + "label": "cycling B cell", + "exact_synonyms": [ + "proliferating B cell" + ] + }, + { + "cl_id": "CL:4033069", + "label": "cycling T cell", + "exact_synonyms": [ + "proliferating T cell" + ] + }, + { + "cl_id": "CL:4033070", + "label": "cycling dendritic cell", + "exact_synonyms": [ + "proliferating dendritic cell" + ] + }, + { + "cl_id": "CL:4033071", + "label": "cycling natural killer cell", + "exact_synonyms": [ + "proliferating natural killer cell" + ] + }, + { + "cl_id": "CL:4033072", + "label": "cycling gamma-delta T cell", + "exact_synonyms": [ + "proliferating gamma-delta T cell" + ] + }, + { + "cl_id": "CL:4033073", + "label": "cycling monocyte", + "exact_synonyms": [ + "proliferating monocyte" + ] + }, + { + "cl_id": "CL:4033074", + "label": "cycling CD8-positive, alpha-beta T cell", + "exact_synonyms": [ + "proliferating CD8-positive, alpha-beta T cell" + ] + }, + { + "cl_id": "CL:4033075", + "label": "cycling CD4-positive, alpha-beta T cell", + "exact_synonyms": [ + "proliferating CD4-positive, alpha-beta T cell" + ] + }, + { + "cl_id": "CL:4033076", + "label": "cycling macrophage", + "exact_synonyms": [ + "proliferating macrophage" + ] + }, + { + "cl_id": "CL:4033077", + "label": "cycling alveolar macrophage", + "exact_synonyms": [ + "proliferating alveolar macrophage" + ] + }, + { + "cl_id": "CL:4033078", + "label": "cycling mononuclear phagocyte", + "exact_synonyms": [ + "proliferating mononuclear phagocyte" + ] + }, + { + "cl_id": "CL:4033079", + "label": "cycling endothelial cell of lymphatic vessel", + "exact_synonyms": [ + "proliferating endothelial cell of lymphatic vessel" + ] + }, + { + "cl_id": "CL:4033080", + "label": "cycling pulmonary alveolar type 2 cell", + "exact_synonyms": [ + "proliferating pulmonary alveolar type 2 cell" + ] + }, + { + "cl_id": "CL:4033081", + "label": "cycling myeloid cell", + "exact_synonyms": [ + "proliferating myeloid cell" + ] + }, + { + "cl_id": "CL:4033082", + "label": "cycling basal cell", + "exact_synonyms": [ + "proliferating basal cell" + ] + }, + { + "cl_id": "CL:4033083", + "label": "squamous granulosa cell", + "exact_synonyms": [ + "flattened granulosa cell" + ] + }, + { + "cl_id": "CL:4033084", + "label": "cuboidal granulosa cell", + "exact_synonyms": [ + "columnar granulosa cell", + "cuboidal epithelial granulosa cell" + ] + }, + { + "cl_id": "CL:4033085", + "label": "diffuse bipolar 5 cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033086", + "label": "lipid-associated macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033087", + "label": "placental resident macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033088", + "label": "decidual resident macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033089", + "label": "atretic follicular cell of ovary", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033090", + "label": "atretic granulosa cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033091", + "label": "glycinergic-GABAergic amacrine cell", + "exact_synonyms": [ + "glycinergic/GABAergic amacrine neuron" + ] + }, + { + "cl_id": "CL:4033092", + "label": "CD57-positive enterocyte", + "exact_synonyms": [ + "CD57+ enterocyte" + ] + }, + { + "cl_id": "CL:4033093", + "label": "limbal epithelial stem cell of cornea", + "exact_synonyms": [ + "limbal epithelial stem cell", + "limbal stem cell" + ] + }, + { + "cl_id": "CL:4033094", + "label": "age-associated B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033095", + "label": "diffuse bipolar 4a cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033096", + "label": "diffuse bipolar 4b cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033097", + "label": "Schlemm's canal endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033098", + "label": "inner wall Schlemm's canal endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033099", + "label": "outer wall Schlemm's canal endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033100", + "label": "atrial intrinsic cardiac ganglion TH neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033101", + "label": "superior cervical ganglion TH/DBH neuron", + "exact_synonyms": [ + "SCG TH/DBH neuron" + ] + }, + { + "cl_id": "CL:4033102", + "label": "superior cervical ganglion TH neuron", + "exact_synonyms": [ + "SCG TH neuron" + ] + }, + { + "cl_id": "CL:4033103", + "label": "superior cervical ganglion NPY neuron", + "exact_synonyms": [ + "SCG NPY neuron" + ] + }, + { + "cl_id": "CL:4033104", + "label": "superior cervical ganglion TH/NPY neuron", + "exact_synonyms": [ + "SCG TH/NPY neuron" + ] + }, + { + "cl_id": "CL:4033105", + "label": "superior cervical ganglion SST neuron", + "exact_synonyms": [ + "SCG SST neuron" + ] + }, + { + "cl_id": "CL:4033106", + "label": "superior cervical ganglion VIP neuron", + "exact_synonyms": [ + "SCG VIP neuron" + ] + }, + { + "cl_id": "CL:4033107", + "label": "superior cervical ganglion CGRP neuron", + "exact_synonyms": [ + "SCG CGRP neuron" + ] + }, + { + "cl_id": "CL:4033108", + "label": "middle cervical ganglion DBH neuron", + "exact_synonyms": [ + "MCG DBH neuron" + ] + }, + { + "cl_id": "CL:4033109", + "label": "middle cervical ganglion TH neuron", + "exact_synonyms": [ + "MCG TH neuron" + ] + }, + { + "cl_id": "CL:4033110", + "label": "middle cervical ganglion TH/NPY neuron", + "exact_synonyms": [ + "MCG TH/NPY neuron" + ] + }, + { + "cl_id": "CL:4033111", + "label": "middle cervical ganglion NPY neuron", + "exact_synonyms": [ + "MCG NPY neuron" + ] + }, + { + "cl_id": "CL:4033112", + "label": "middle cervical ganglion VIP neuron", + "exact_synonyms": [ + "MCG VIP neuron" + ] + }, + { + "cl_id": "CL:4033113", + "label": "cervicothoracic ganglion enkephalin neuron", + "exact_synonyms": [ + "stellate ganglion enkephalin neuron" + ] + }, + { + "cl_id": "CL:4033114", + "label": "cervicothoracic ganglion TH neuron", + "exact_synonyms": [ + "stellate ganglion TH neuron" + ] + }, + { + "cl_id": "CL:4033115", + "label": "cervicothoracic ganglion TH/NPY neuron", + "exact_synonyms": [ + "stellate ganglion TH/NPY neuron" + ] + }, + { + "cl_id": "CL:4033116", + "label": "cervicothoracic ganglion VIP neuron", + "exact_synonyms": [ + "stellate ganglion VIP neuron" + ] + }, + { + "cl_id": "CL:4033117", + "label": "cervicothoracic ganglion VAChT neuron", + "exact_synonyms": [ + "stellate ganglion VAChT neuron" + ] + }, + { + "cl_id": "CL:4033118", + "label": "thoracic ganglion enkephalin neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033119", + "label": "thoracic ganglion TH neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033120", + "label": "thoracic ganglion TH/NPY neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033121", + "label": "lumbar ganglion VIP neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033122", + "label": "lumbar ganglion SST/TH neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033123", + "label": "lumbar ganglion TH/NPY neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033124", + "label": "lumbar ganglion TH neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033125", + "label": "lumbar ganglion NPY neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033126", + "label": "sacral ganglion TH neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033127", + "label": "lower airway ganglion ChAT/VIP neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033128", + "label": "celiac ganglion VIP neuron", + "exact_synonyms": [ + "CG VIP neuron" + ] + }, + { + "cl_id": "CL:4033129", + "label": "celiac ganglion PHI neuron", + "exact_synonyms": [ + "CG PHI neuron" + ] + }, + { + "cl_id": "CL:4033130", + "label": "celiac ganglion CGRP neuron", + "exact_synonyms": [ + "CG CGRP neuron" + ] + }, + { + "cl_id": "CL:4033131", + "label": "celiac ganglion SP neuron", + "exact_synonyms": [ + "CG SP neuron" + ] + }, + { + "cl_id": "CL:4033132", + "label": "celiac ganglion SOM neuron", + "exact_synonyms": [ + "CG SOM neuron" + ] + }, + { + "cl_id": "CL:4033133", + "label": "celiac ganglion SOM/CGRP neuron", + "exact_synonyms": [ + "CG SOM/CGRP neuron" + ] + }, + { + "cl_id": "CL:4033134", + "label": "superior mesenteric ganglion SP neuron", + "exact_synonyms": [ + "SMG SP neuron" + ] + }, + { + "cl_id": "CL:4033135", + "label": "inferior mesenteric ganglion TH neuron", + "exact_synonyms": [ + "IMG TH neuron" + ] + }, + { + "cl_id": "CL:4033136", + "label": "inferior mesenteric ganglion SP neuron", + "exact_synonyms": [ + "IMG SP neuron" + ] + }, + { + "cl_id": "CL:4033137", + "label": "otic ganglion nNOS neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033138", + "label": "otic ganglion VIP neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033139", + "label": "ciliary ganglion VIP/PHI neuron", + "exact_synonyms": [ + "ciliary ganglion VIP-PHI neuron" + ] + }, + { + "cl_id": "CL:4033140", + "label": "ciliary ganglion TH neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033141", + "label": "submandibular ganglion TH cholinergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033142", + "label": "submandibular ganglion VIP/PHI neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033143", + "label": "submandibular ganglion nNOS neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033144", + "label": "pterygopalatine ganglion VIP/PHI neuron", + "exact_synonyms": [ + "sphenopalatine ganglion VIP/PHI neuron" + ] + }, + { + "cl_id": "CL:4033145", + "label": "pterygopalatine ganglion VIP neuron", + "exact_synonyms": [ + "sphenopalatine ganglion VIP neuron" + ] + }, + { + "cl_id": "CL:4033146", + "label": "pterygopalatine ganglion nNOS neuron", + "exact_synonyms": [ + "sphenopalatine ganglion nNOS neuron" + ] + }, + { + "cl_id": "CL:4033147", + "label": "vestibular ganglion SP neuron", + "exact_synonyms": [ + "Scarpa's ganglion SP neuron" + ] + }, + { + "cl_id": "CL:4033148", + "label": "nodose ganglion TRPV1 neuron", + "exact_synonyms": [ + "inferior vagus X ganglion TRPV1 neuron" + ] + }, + { + "cl_id": "CL:4033149", + "label": "nodose ganglion P2X3 neuron", + "exact_synonyms": [ + "inferior vagus X ganglion P2X3 neuron" + ] + }, + { + "cl_id": "CL:4033150", + "label": "nodose ganglion TRPV2 neuron", + "exact_synonyms": [ + "inferior vagus X ganglion TRPV2 neuron" + ] + }, + { + "cl_id": "CL:4033151", + "label": "nodose ganglion PVALB neuron", + "exact_synonyms": [ + "inferior vagus X ganglion PVALB neuron" + ] + }, + { + "cl_id": "CL:4033152", + "label": "jugular ganglion TRPV1 neuron", + "exact_synonyms": [ + "superior vagus X ganglion TRPV1 neuron" + ] + }, + { + "cl_id": "CL:4033153", + "label": "jugular ganglion TRPV2 neuron", + "exact_synonyms": [ + "superior vagus X ganglion TRPV2 neuron" + ] + }, + { + "cl_id": "CL:4033154", + "label": "jugular ganglion SP neuron", + "exact_synonyms": [ + "superior vagus X ganglion SP neuron" + ] + }, + { + "cl_id": "CL:4033155", + "label": "jugular ganglion CGRP neuron", + "exact_synonyms": [ + "superior vagus X ganglion CGRP neuron" + ] + }, + { + "cl_id": "CL:4033156", + "label": "jugular ganglion SPARCL1 neuron", + "exact_synonyms": [ + "superior vagus X ganglion SPARCL1 neuron" + ] + }, + { + "cl_id": "CL:4033157", + "label": "geniculate ganglion TRPV1 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033158", + "label": "geniculate ganglion SPARCL1 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033159", + "label": "geniculate ganglion VGLUT2 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033160", + "label": "myenteric ganglion of small intestine ChAT neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033161", + "label": "myenteric ganglion of small intestine nNOS neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033162", + "label": "myenteric ganglion of small intestine VIP neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033163", + "label": "myenteric ganglion of small intestine nNOS/VIP neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033164", + "label": "myenteric ganglion of small intestine nNOS/ChAT neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033165", + "label": "myenteric ganglion of small intestine ChAT/CALR/SOM/SP neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033166", + "label": "myenteric ganglion of small intestine VIP/GAL neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033167", + "label": "pelvic ganglion TH neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033168", + "label": "pelvic ganglion TH/DBH neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033169", + "label": "pelvic ganglion VAChT neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033170", + "label": "pelvic ganglion nNOS neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033171", + "label": "pelvic ganglion nNOS/VIP neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033172", + "label": "pelvic ganglion NPY/VAChT neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033173", + "label": "pelvic ganglion nNOS/VAChT neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033174", + "label": "ovarian nerve plexus ganglion TH neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4033175", + "label": "dorsal root ganglion BRN3A neuron", + "exact_synonyms": [ + "DRG BRN3A neuron" + ] + }, + { + "cl_id": "CL:4033176", + "label": "dorsal root ganglion CGRP neuron", + "exact_synonyms": [ + "DRG CGRP neuron" + ] + }, + { + "cl_id": "CL:4033177", + "label": "dorsal root ganglion EDN1 neuron", + "exact_synonyms": [ + "DRG EDN1 neuron" + ] + }, + { + "cl_id": "CL:4033178", + "label": "dorsal root ganglion Nav1.7 neuron", + "exact_synonyms": [ + "DRG Nav1.7 neuron" + ] + }, + { + "cl_id": "CL:4033179", + "label": "dorsal root ganglion Nav1.9 neuron", + "exact_synonyms": [ + "DRG Nav1.9 neuron" + ] + }, + { + "cl_id": "CL:4033180", + "label": "dorsal root ganglion peripherin neuron", + "exact_synonyms": [ + "DRG peripherin neuron" + ] + }, + { + "cl_id": "CL:4033181", + "label": "dorsal root ganglion Piezo2 neuron", + "exact_synonyms": [ + "DRG Piezo2 neuron" + ] + }, + { + "cl_id": "CL:4033182", + "label": "dorsal root ganglion RET neuron", + "exact_synonyms": [ + "DRG RET neuron" + ] + }, + { + "cl_id": "CL:4033183", + "label": "dorsal root ganglion SP neuron", + "exact_synonyms": [ + "DRG SP neuron" + ] + }, + { + "cl_id": "CL:4033184", + "label": "dorsal root ganglion TRPV1 neuron", + "exact_synonyms": [ + "DRG TRPV1 neuron" + ] + }, + { + "cl_id": "CL:4040000", + "label": "glial restricted tripotential precursor cell", + "exact_synonyms": [ + "tripotential glial-restricted precursor cell" + ] + }, + { + "cl_id": "CL:4040001", + "label": "chorionic girdle cell", + "exact_synonyms": [ + "equine chorionic girdle cell" + ] + }, + { + "cl_id": "CL:4040002", + "label": "enteroglial cell", + "exact_synonyms": [ + "enteric glial cell" + ] + }, + { + "cl_id": "CL:4040003", + "label": "fetal pre-type II pulmonary alveolar epithelial cell", + "exact_synonyms": [ + "fetal alveolar pre-type II epithelial cell", + "fetal pre-type 2 pneumocyte", + "fetal pre-type II alveolar epithelial cell", + "fetal pre-type II pneumocyte" + ] + }, + { + "cl_id": "CL:4040004", + "label": "mesenchymal stem cell of orbital adipose tissue", + "exact_synonyms": [ + "OAMSC", + "Orbital ASCs", + "orbital adipose-derived mesenchymal stem cell" + ] + }, + { + "cl_id": "CL:4040005", + "label": "mesenchymal stem cell of apical papilla", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4040006", + "label": "dermal chromatophore", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042001", + "label": "TAC3-positive striatal interneuron", + "exact_synonyms": [ + "TAC3 interneuron" + ] + }, + { + "cl_id": "CL:4042002", + "label": "TAC3-positive medium spiny neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042003", + "label": "border associated macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042004", + "label": "choroid epiplexus macrophage", + "exact_synonyms": [ + "Kolmer\u2019s cell" + ] + }, + { + "cl_id": "CL:4042005", + "label": "stromal choroid plexus macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042006", + "label": "dural macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042007", + "label": "protoplasmic astrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042008", + "label": "fibrous astrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042009", + "label": "interlaminar astrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042010", + "label": "pial interlaminar astrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042011", + "label": "subpial interlaminar astrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042012", + "label": "L2 marginal neuron", + "exact_synonyms": [ + "layer 2 marginal neuron" + ] + }, + { + "cl_id": "CL:4042013", + "label": "Lamp5 Lhx6 neuron", + "exact_synonyms": [ + "Ivy cell", + "Lamp5-Lhx6 type" + ] + }, + { + "cl_id": "CL:4042014", + "label": "spiny VIP neuron", + "exact_synonyms": [ + "superficial VIP-positive spiny neuron" + ] + }, + { + "cl_id": "CL:4042015", + "label": "VIP-ChAT interneuron", + "exact_synonyms": [ + "VIP+/ChAT+ interneuron", + "VIP/ChAT interneuron" + ] + }, + { + "cl_id": "CL:4042016", + "label": "nasal serous secreting cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042017", + "label": "alpha1-tanycyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042018", + "label": "alpha2-tanycyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042019", + "label": "beta1-tanycyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042020", + "label": "beta2-tanycyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042021", + "label": "neuronal-restricted precursor", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042022", + "label": "astrocyte-restricted precursor", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042023", + "label": "striatal pthlh-expressing interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042024", + "label": "striatal PTHLH MOXD1 expressing interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042025", + "label": "substantia nigra dopaminergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042026", + "label": "GABAergic interneuron of the anterior substantia nigra pars reticulata", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042027", + "label": "GABAergic interneuron of the posterior substantia nigra pars reticulata", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042028", + "label": "immature neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042029", + "label": "cortical immature neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042030", + "label": "candelabrum cell", + "exact_synonyms": [ + "candelabrum interneuron" + ] + }, + { + "cl_id": "CL:4042031", + "label": "immune oligodendroglia", + "exact_synonyms": [ + "immune oligodendrocyte" + ] + }, + { + "cl_id": "CL:4042032", + "label": "PAX6 GABAergic interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042033", + "label": "pro-opiomelanocortin neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042034", + "label": "CGRP-expressing neuron", + "exact_synonyms": [ + "Calcitonin gene-related peptide neuron" + ] + }, + { + "cl_id": "CL:4042035", + "label": "molecular layer interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042036", + "label": "melanin-concentrating hormone neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042037", + "label": "sst GABAergic neuron of the striatum", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042038", + "label": "rostral primary motorneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042039", + "label": "caudal ganglionic eminence derived neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042040", + "label": "glutamatergic neuron of the basal ganglia", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4042041", + "label": "middle primary motoneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047001", + "label": "cycling stromal cell", + "exact_synonyms": [ + "proliferating stromal cell" + ] + }, + { + "cl_id": "CL:4047002", + "label": "cycling glial cell", + "exact_synonyms": [ + "proliferating glial cell" + ] + }, + { + "cl_id": "CL:4047003", + "label": "cycling plasma cell", + "exact_synonyms": [ + "proliferating plasma cell" + ] + }, + { + "cl_id": "CL:4047004", + "label": "cycling type EC enteroendocrine cell", + "exact_synonyms": [ + "proliferating type EC enteroendocrine cell" + ] + }, + { + "cl_id": "CL:4047005", + "label": "cycling neuroblast (sensu Vertebrata)", + "exact_synonyms": [ + "proliferating neuroblast (sensu Vertebrata)" + ] + }, + { + "cl_id": "CL:4047006", + "label": "fetal artery endothelial cell", + "exact_synonyms": [ + "endothelial cell of fetal artery", + "fetal arterial EC", + "fetal artery EC" + ] + }, + { + "cl_id": "CL:4047007", + "label": "immature pericyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047011", + "label": "fetal vein endothelial cell", + "exact_synonyms": [ + "fetal venous endothelial cell" + ] + }, + { + "cl_id": "CL:4047012", + "label": "angiogenic pericyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047017", + "label": "transit amplifying cell of gut", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047018", + "label": "early colonocyte", + "exact_synonyms": [ + "early enterocyte of colon" + ] + }, + { + "cl_id": "CL:4047019", + "label": "early enterocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047023", + "label": "intestinal lamina propria fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047025", + "label": "type G cell of stomach", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047029", + "label": "post-arteriole capillary cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047030", + "label": "pre-venule capillary cell", + "exact_synonyms": [ + "Cap-Venous endothelial cell" + ] + }, + { + "cl_id": "CL:4047032", + "label": "secretory pericyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047034", + "label": "smooth muscle cell of stomach", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047035", + "label": "stomach smooth muscle outer longitudinal layer cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047036", + "label": "stomach smooth muscle circular layer cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047037", + "label": "stomach smooth muscle inner oblique layer cell", + "exact_synonyms": [ + "stomach smooth muscle oblique layer cell" + ] + }, + { + "cl_id": "CL:4047038", + "label": "dogiel type I neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047040", + "label": "smooth muscle circular layer cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047042", + "label": "type 1 myenteric plexus glia", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047043", + "label": "type 1 submucosal plexus glia", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047044", + "label": "type 2 interganglionic glia", + "exact_synonyms": [ + "type II enteric glia" + ] + }, + { + "cl_id": "CL:4047045", + "label": "type 3 mucosal glia", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047047", + "label": "type I enteric glial cell", + "exact_synonyms": [ + "intraganglionic glia", + "type 1 enteric glia", + "type I enteric glia" + ] + }, + { + "cl_id": "CL:4047048", + "label": "type 4 muscularis propria glia", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047051", + "label": "small intestine BEST4+ enterocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047052", + "label": "BEST4+ colonocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047053", + "label": "TREM2-positive macrophage", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047054", + "label": "migratory dendritic cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047056", + "label": "large mucus secreting cholangiocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4047060", + "label": "BAG3-positive monocyte", + "exact_synonyms": [ + "BAG3+ monocyte" + ] + }, + { + "cl_id": "CL:4047101", + "label": "liver-resident natural killer cell", + "exact_synonyms": [ + "he-NK", + "hepatic NK", + "hepatic natural killer cells", + "intrahepatic NK", + "liver NK cell", + "liver resident natural killer cell", + "liver-specific natural killer cell", + "lr-NK" + ] + }, + { + "cl_id": "CL:4052001", + "label": "multiciliated ependymal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052002", + "label": "syncytial cell", + "exact_synonyms": [ + "syncytium" + ] + }, + { + "cl_id": "CL:4052003", + "label": "intestinal villus capillary endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052004", + "label": "intestinal fibroblastic reticular cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052005", + "label": "intestinal subserosal fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052006", + "label": "intestinal enteroendocrine progenitor", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052007", + "label": "subepithelial intestinal fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052008", + "label": "crypt-bottom fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052009", + "label": "crypt-top fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052010", + "label": "pre-theca cell", + "exact_synonyms": [ + "early theca cell", + "progenitor theca cell" + ] + }, + { + "cl_id": "CL:4052011", + "label": "follicle associated enterocyte", + "exact_synonyms": [ + "follicle-associated epithelium enterocyte" + ] + }, + { + "cl_id": "CL:4052012", + "label": "interna theca cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052013", + "label": "externa theca cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052014", + "label": "pancreatic islet capillary endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052015", + "label": "endocrine gland capillary endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052016", + "label": "pituitary gland capillary endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052017", + "label": "choroid plexus capillary endothelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052018", + "label": "fallopian tube epithelial cell", + "exact_synonyms": [ + "uterine tube epithelial cell" + ] + }, + { + "cl_id": "CL:4052019", + "label": "fallopian tube non-ciliated epithelial cell", + "exact_synonyms": [ + "fallopian tube non-ciliated cell" + ] + }, + { + "cl_id": "CL:4052020", + "label": "lung resident granzyme K-associated CD8 T cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052021", + "label": "granzyme K-associated CD8 T cell", + "exact_synonyms": [ + "granzyme K+ CD8 T cell", + "tissue-enriched expressing GzmK CD8 cell" + ] + }, + { + "cl_id": "CL:4052022", + "label": "fallopian tube smooth muscle cell", + "exact_synonyms": [ + "uterine tube smooth muscle cell" + ] + }, + { + "cl_id": "CL:4052023", + "label": "luminal endometrial unciliated epithelial cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052024", + "label": "myotendinous junction nucleus", + "exact_synonyms": [ + "myotendinous junction myonuclei", + "myotendinous junction nuclei" + ] + }, + { + "cl_id": "CL:4052025", + "label": "neuromuscular junction nucleus", + "exact_synonyms": [ + "neuromuscular junction myonuclei", + "neuromuscular junction nuclei" + ] + }, + { + "cl_id": "CL:4052026", + "label": "type IIx muscle cell", + "exact_synonyms": [ + "type 2x fiber", + "type 2x muscle cell", + "type 2x muscle fiber", + "type IIx muscle fiber" + ] + }, + { + "cl_id": "CL:4052027", + "label": "atretic theca cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052028", + "label": "uterine natural killer cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052029", + "label": "subpleural fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052030", + "label": "adventitial fibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052031", + "label": "respiratory airway secretory cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052032", + "label": "granzyme H-associated CD8 T cell", + "exact_synonyms": [ + "granzyme H+ CD8 T cell" + ] + }, + { + "cl_id": "CL:4052033", + "label": "biliary tuft cell", + "exact_synonyms": [ + "gallbladder/extrahepatic bile duct tuft cell" + ] + }, + { + "cl_id": "CL:4052034", + "label": "tuft cell of thymus", + "exact_synonyms": [ + "thymic tuft cell" + ] + }, + { + "cl_id": "CL:4052035", + "label": "tuft cell of pancreatic duct", + "exact_synonyms": [ + "pancreatic brush cell", + "pancreatic tuft cell" + ] + }, + { + "cl_id": "CL:4052036", + "label": "tuft cell of nasal cavity", + "exact_synonyms": [ + "nasal brush cell", + "nasal tuft cell" + ] + }, + { + "cl_id": "CL:4052037", + "label": "tuft cell of olfactory epithelium", + "exact_synonyms": [ + "olfactory tuft cell" + ] + }, + { + "cl_id": "CL:4052038", + "label": "tuft cell of nasal cavity respiratory epithelium", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052039", + "label": "tuft cell of submandibular gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052040", + "label": "tuft cell of stomach", + "exact_synonyms": [ + "gastric tuft cell" + ] + }, + { + "cl_id": "CL:4052041", + "label": "tuft cell of auditory tube", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052042", + "label": "tuft cell of urethra", + "exact_synonyms": [ + "urethral brush cell", + "urethral cholinergic chemosensory cell", + "urethral tuft cell" + ] + }, + { + "cl_id": "CL:4052045", + "label": "steroidogenic stromal cell of ovary", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052046", + "label": "early luteal cell", + "exact_synonyms": [ + "active corpus luteum cell" + ] + }, + { + "cl_id": "CL:4052047", + "label": "late luteal cell", + "exact_synonyms": [ + "regressing corpus luteum cell" + ] + }, + { + "cl_id": "CL:4052048", + "label": "intercalated cell of salivary gland", + "exact_synonyms": [ + "salivary intercalated duct cells" + ] + }, + { + "cl_id": "CL:4052049", + "label": "striated cell of salivary gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052050", + "label": "luminal epithelial cell of endometrium", + "exact_synonyms": [ + "endometrial luminal epithelial cell" + ] + }, + { + "cl_id": "CL:4052051", + "label": "uterine natural killer cell 1, human", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052052", + "label": "uterine natural killer cell 2, human", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052053", + "label": "uterine natural killer cell 3, human", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052055", + "label": "mature NK T cell, human", + "exact_synonyms": [ + "mature NK T lymphocyte, human", + "mature NK T-cell, human", + "mature NK T-lymphocyte, human", + "mature NKT cell, human", + "mature natural killer T cell, human", + "mature natural killer T lymphocyte, human", + "mature natural killer T-lymphocyte, human" + ] + }, + { + "cl_id": "CL:4052058", + "label": "Merkel cell of epidermis", + "exact_synonyms": [ + "epdiermal Merkel cell" + ] + }, + { + "cl_id": "CL:4052060", + "label": "spinous cell", + "exact_synonyms": [ + "prickle cell" + ] + }, + { + "cl_id": "CL:4052061", + "label": "epidermal keratinocyte", + "exact_synonyms": [ + "keratincyte of epidermis", + "skin keratinocyte" + ] + }, + { + "cl_id": "CL:4052062", + "label": "onychofibroblast", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052063", + "label": "nail bed keratinocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052064", + "label": "nail matrix keratinocyte", + "exact_synonyms": [ + "nail matrix epithelial keratinocyte" + ] + }, + { + "cl_id": "CL:4052065", + "label": "serous acinar cell of salivary gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052066", + "label": "mucous acinar cell of salivary gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052067", + "label": "seromucous acinar cell of salivary gland", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4052069", + "label": "excretory duct cell of salivary gland", + "exact_synonyms": [ + "salivary excretory duct cell" + ] + }, + { + "cl_id": "CL:4052070", + "label": "dual-feature fallopian tube progenitor cell", + "exact_synonyms": [ + "unclassified fallopian tube progenitor" + ] + }, + { + "cl_id": "CL:4052071", + "label": "quiescent fibroblast", + "exact_synonyms": [ + "inactive fibroblast" + ] + }, + { + "cl_id": "CL:4052108", + "label": "IgD-negative class switched memory B cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4070010", + "label": "gastric mill neuron", + "exact_synonyms": [ + "GM" + ] + }, + { + "cl_id": "CL:4070011", + "label": "lateral gastric neuron", + "exact_synonyms": [ + "LG" + ] + }, + { + "cl_id": "CL:4070012", + "label": "inferior cardiac neuron", + "exact_synonyms": [ + "IC" + ] + }, + { + "cl_id": "CL:4070013", + "label": "ventricular dilator motor neuron", + "exact_synonyms": [ + "VD" + ] + }, + { + "cl_id": "CL:4070014", + "label": "pyloric motor neuron", + "exact_synonyms": [ + "PY" + ] + }, + { + "cl_id": "CL:4070015", + "label": "pyloric dilator neuron", + "exact_synonyms": [ + "PD" + ] + }, + { + "cl_id": "CL:4070016", + "label": "anterior burster neuron", + "exact_synonyms": [ + "AB" + ] + }, + { + "cl_id": "CL:4070017", + "label": "lateral pyloric motor neuron", + "exact_synonyms": [ + "LP" + ] + }, + { + "cl_id": "CL:4072001", + "label": "newly formed oligodendrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072002", + "label": "myelin-forming oligodendrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072003", + "label": "mature myelinating oligodendrocyte", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072005", + "label": "A8 dopaminergic neuron", + "exact_synonyms": [ + "A8 dopamine neuron" + ] + }, + { + "cl_id": "CL:4072006", + "label": "A9 dopaminergic neuron", + "exact_synonyms": [ + "A9 nigral dopamine neuron", + "substantia nigra dopaminergic neuron" + ] + }, + { + "cl_id": "CL:4072007", + "label": "A10 dopaminergic neuron", + "exact_synonyms": [ + "A10 VTA Dopaminergic Neuron" + ] + }, + { + "cl_id": "CL:4072008", + "label": "A11 dopaminergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072009", + "label": "A12 dopaminergic neuron", + "exact_synonyms": [ + "hypothalamic arcuate nucleus dopaminergic neuron" + ] + }, + { + "cl_id": "CL:4072010", + "label": "A13 dopaminergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072011", + "label": "A14 dopaminergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072012", + "label": "A15 dopaminergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072013", + "label": "A16 dopaminergic neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072014", + "label": "tanycyte of vascular organ of lamina terminalis", + "exact_synonyms": [ + "tanycyte-like cell of OVLT", + "tanycyte-like ependymal cell of OVLT" + ] + }, + { + "cl_id": "CL:4072015", + "label": "monocyte-derived Kupffer cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072016", + "label": "NPY interneuron", + "exact_synonyms": [ + "NPY-expressing neuron" + ] + }, + { + "cl_id": "CL:4072017", + "label": "agouti-related protein expressing neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072018", + "label": "pacemaker neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072019", + "label": "SCN pacemaker neuron", + "exact_synonyms": [ + "pacemaker neuron of the suprachiasmatic nucleus" + ] + }, + { + "cl_id": "CL:4072021", + "label": "corticotropin-releasing neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072022", + "label": "Lamp5 Lhx6 GABAergic interneuron (Homo sapiens)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072027", + "label": "sst GABAergic interneuron (Homo sapiens)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072029", + "label": "pvalb GABAergic interneuron (Homo sapiens)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072031", + "label": "sst chodl GABAergic interneuron (Homo sapiens)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072032", + "label": "VIP GABAergic interneuron (Homo sapiens)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072034", + "label": "lamp5 GABAergic interneuron (Homo sapiens)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072035", + "label": "sncg GABAergic interneuron (Homo sapiens)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072036", + "label": "PAX6 GABAergic interneuron (Homo sapiens)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072037", + "label": "L2/3 intratelencephalic projecting glutamatergic neuron (Homo sapiens)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072038", + "label": "L5 intratelencephalic projecting glutamatergic neuron (Homo sapiens)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072039", + "label": "L4 intratelencephalic projecting glutamatergic neuron (Homo sapiens)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072040", + "label": "L6 intratelencephalic projecting Car3 glutamatergic neuron (Homo sapiens)", + "exact_synonyms": [ + "L6 IT Car3 glutamatergic neuron (Homo sapiens)" + ] + }, + { + "cl_id": "CL:4072041", + "label": "L6 intratelencephalic projecting glutamatergic neuron (Homo sapiens)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072042", + "label": "L5/6 near-projecting glutamatergic neuron (Homo sapiens)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072043", + "label": "L5 extratelencephalic projecting glutamatergic cortical neuron (Homo sapiens)", + "exact_synonyms": [ + "Pyramidal tract-like (PT-l) (Homo sapiens)", + "burst-firing layer 5 neuron (Homo sapiens)", + "thick-tufted layer 5 (TTL5) pyramidal neuron (Homo sapiens)" + ] + }, + { + "cl_id": "CL:4072044", + "label": "L6 corticothalamic-projecting glutamatergic cortical neuron (Homo sapiens)", + "exact_synonyms": [ + "L6 CT (Homo sapiens)" + ] + }, + { + "cl_id": "CL:4072045", + "label": "L6b glutamatergic cortical neuron (Homo sapiens)", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072046", + "label": "pvalb chandelier GABAergic interneuron (Homo sapiens)", + "exact_synonyms": [ + "Chandelier PV (Homo sapiens)", + "chandelier pvalb GABAergic interneuron (Homo sapiens)" + ] + }, + { + "cl_id": "CL:4072102", + "label": "Purkinje layer interneuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072103", + "label": "hair follicle dermal stem cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4072104", + "label": "fibrochondrocyte", + "exact_synonyms": [ + "fibrocartilage chondrocyte" + ] + }, + { + "cl_id": "CL:4079000", + "label": "cervical dorsal root ganglion CGRP neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079001", + "label": "cervical dorsal root ganglion endothelin-1 neuron", + "exact_synonyms": [ + "cervical dorsal root ganglion Endothelin 1 neuron" + ] + }, + { + "cl_id": "CL:4079002", + "label": "cervical dorsal root ganglion Nav1.7 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079003", + "label": "cervical dorsal root ganglion Nav1.9 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079004", + "label": "cervical dorsal root ganglion peripherin neuron", + "exact_synonyms": [ + "cervical dorsal root ganglion Peripherin neuron" + ] + }, + { + "cl_id": "CL:4079005", + "label": "cervical dorsal root ganglion Piezo2 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079006", + "label": "cervical dorsal root ganglion RET neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079007", + "label": "cervical dorsal root ganglion substance P neuron", + "exact_synonyms": [ + "cervical dorsal root ganglion SP neuron" + ] + }, + { + "cl_id": "CL:4079008", + "label": "cervical dorsal root ganglion TRPV1 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079010", + "label": "intrinsic cardiac ganglion TH neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079011", + "label": "lumbar dorsal root ganglion CGRP neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079012", + "label": "lumbar dorsal root ganglion endothelin-1 neuron", + "exact_synonyms": [ + "lumbar dorsal root ganglion Endothelin 1 neuron" + ] + }, + { + "cl_id": "CL:4079013", + "label": "lumbar dorsal root ganglion Nav1.7 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079014", + "label": "lumbar dorsal root ganglion Nav1.9 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079015", + "label": "lumbar dorsal root ganglion peripherin neuron", + "exact_synonyms": [ + "lumbar dorsal root ganglion Peripherin neuron" + ] + }, + { + "cl_id": "CL:4079016", + "label": "lumbar dorsal root ganglion Piezo2 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079017", + "label": "lumbar dorsal root ganglion RET neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079018", + "label": "lumbar dorsal root ganglion substance P neuron", + "exact_synonyms": [ + "lumbar dorsal root ganglion SP neuron" + ] + }, + { + "cl_id": "CL:4079019", + "label": "lumbar dorsal root ganglion TRPV1 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079020", + "label": "sacral dorsal root ganglion CGRP neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079021", + "label": "sacral dorsal root ganglion endothelin-1 neuron", + "exact_synonyms": [ + "sacral dorsal root ganglion Endothelin 1 neuron" + ] + }, + { + "cl_id": "CL:4079022", + "label": "sacral dorsal root ganglion Nav1.7 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079023", + "label": "sacral dorsal root ganglion Nav1.9 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079024", + "label": "sacral dorsal root ganglion peripherin neuron", + "exact_synonyms": [ + "sacral dorsal root ganglion Peripherin neuron" + ] + }, + { + "cl_id": "CL:4079025", + "label": "sacral dorsal root ganglion Piezo2 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079026", + "label": "sacral dorsal root ganglion RET neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079027", + "label": "sacral dorsal root ganglion substance P neuron", + "exact_synonyms": [ + "sacral dorsal root ganglion SP neuron" + ] + }, + { + "cl_id": "CL:4079028", + "label": "sacral dorsal root ganglion TRPV1 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079029", + "label": "thoracic dorsal root ganglion CGRP neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079030", + "label": "thoracic dorsal root ganglion endothelin-1 neuron", + "exact_synonyms": [ + "thoracic dorsal root ganglion Endothelin 1 neuron" + ] + }, + { + "cl_id": "CL:4079031", + "label": "thoracic dorsal root ganglion Nav1.7 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079032", + "label": "thoracic dorsal root ganglion Nav1.9 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079033", + "label": "thoracic dorsal root ganglion peripherin neuron", + "exact_synonyms": [ + "thoracic dorsal root ganglion Peripherin neuron" + ] + }, + { + "cl_id": "CL:4079034", + "label": "thoracic dorsal root ganglion Piezo2 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079035", + "label": "thoracic dorsal root ganglion RET neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4079036", + "label": "thoracic dorsal root ganglion substance P neuron", + "exact_synonyms": [ + "thoracic dorsal root ganglion SP neuron" + ] + }, + { + "cl_id": "CL:4079037", + "label": "thoracic dorsal root ganglion TRPV1 neuron", + "exact_synonyms": [] + }, + { + "cl_id": "CL:4300028", + "label": "cerebellar GABAergic neuron (Mmus)", + "exact_synonyms": [ + "28 CB GABA" + ] + }, + { + "cl_id": "CL:4300029", + "label": "cerebellar glutamatergic neuron (Mmus)", + "exact_synonyms": [ + "29 CB Glut" + ] + }, + { + "cl_id": "CL:4300031", + "label": "OPC-Oligo cell (Mmus)", + "exact_synonyms": [ + "31 OPC-Oligo" + ] + }, + { + "cl_id": "CL:4300101", + "label": "STR D1 Gaba direct pathway medium spiny neuron (Mmus)", + "exact_synonyms": [ + "061 STR D1 Gaba" + ] + }, + { + "cl_id": "CL:4300102", + "label": "STR D2 Gaba indirect pathway medium spiny neuron (Mmus)", + "exact_synonyms": [ + "062 STR D2 Gaba" + ] + }, + { + "cl_id": "CL:4300348", + "label": "DCO Il22 Gly-Gaba cerebellar neuron (Mmus)", + "exact_synonyms": [ + "308 DCO Il22 Gly-Gaba" + ] + }, + { + "cl_id": "CL:4300349", + "label": "Purkinje layer interneuron (Mmus)", + "exact_synonyms": [ + "309 CB PLI Gly-Gaba" + ] + }, + { + "cl_id": "CL:4300351", + "label": "CBX MLI Megf11 Gaba molecular layer interneuron (Mmus)", + "exact_synonyms": [ + "311 CBX MLI Megf11 Gaba" + ] + }, + { + "cl_id": "CL:4300353", + "label": "Purkinje cell (Mmus)", + "exact_synonyms": [ + "313 CBX Purkinje Gaba" + ] + }, + { + "cl_id": "CL:4300354", + "label": "cerebellar granule cell (Mmus)", + "exact_synonyms": [ + "314 CB Granule Glut" + ] + }, + { + "cl_id": "CL:4300358", + "label": "subcortical astrocyte (Mmus)", + "exact_synonyms": [ + "318 Astro-NT NN", + "non-telencephalic astrocyte" + ] + }, + { + "cl_id": "CL:4300359", + "label": "astrocyte of cerebrum (Mmus)", + "exact_synonyms": [ + "319 Astro-TE NN", + "telencephalic astrocyte" + ] + }, + { + "cl_id": "CL:4300360", + "label": "olfactory areas astrocyte (Mmus)", + "exact_synonyms": [ + "320 Astro-OLF NN" + ] + }, + { + "cl_id": "CL:4300362", + "label": "tanycyte (Mmus)", + "exact_synonyms": [ + "322 Tanycyte NN" + ] + }, + { + "cl_id": "CL:4300363", + "label": "ependymal cell (Mmus)", + "exact_synonyms": [ + "323 Ependymal NN" + ] + }, + { + "cl_id": "CL:4300366", + "label": "oligodendrocyte precursor cell (Mmus)", + "exact_synonyms": [ + "326 OPC NN" + ] + }, + { + "cl_id": "CL:4300367", + "label": "oligodendrocyte (Mmus)", + "exact_synonyms": [ + "327 Oligo NN" + ] + }, + { + "cl_id": "CL:4300370", + "label": "VLMC NN vascular leptomeningeal cell (Mmus)", + "exact_synonyms": [ + "330 VLMC NN" + ] + }, + { + "cl_id": "CL:4301571", + "label": "DCO Il22 Gly-Gaba_1 cerebellar neuron (Mmus)", + "exact_synonyms": [ + "1141 DCO Il22 Gly-Gaba_1" + ] + }, + { + "cl_id": "CL:4301573", + "label": "DCO Il22 Gly-Gaba_3 cerebellar neuron (Mmus)", + "exact_synonyms": [ + "1143 DCO Il22 Gly-Gaba_3" + ] + }, + { + "cl_id": "CL:4301574", + "label": "CB PLI Gly-Gaba_1 Purkinje layer interneuron (Mmus)", + "exact_synonyms": [ + "1144 CB PLI Gly-Gaba_1" + ] + }, + { + "cl_id": "CL:4301575", + "label": "Lugaro cell (Mmus)", + "exact_synonyms": [ + "1145 CB PLI Gly-Gaba_2" + ] + }, + { + "cl_id": "CL:4301576", + "label": "CB PLI Gly-Gaba_3 Purkinje layer interneuron (Mmus)", + "exact_synonyms": [ + "1146 CB PLI Gly-Gaba_3" + ] + }, + { + "cl_id": "CL:4301578", + "label": "cerebellar Golgi cell (Mmus)", + "exact_synonyms": [ + "1148 CBX Golgi Gly-Gaba_1", + "310 CBX Golgi Gly-Gaba" + ] + }, + { + "cl_id": "CL:4301579", + "label": "CBX MLI Megf11 Gaba_1 molecular layer interneuron (Mmus)", + "exact_synonyms": [ + "1149 CBX MLI Megf11 Gaba_1" + ] + }, + { + "cl_id": "CL:4301580", + "label": "CBX MLI Megf11 Gaba_2 molecular layer interneuron (Mmus)", + "exact_synonyms": [ + "1150 CBX MLI Megf11 Gaba_2" + ] + }, + { + "cl_id": "CL:4301582", + "label": "CBX Purkinje Gaba_1 Purkinje cell (Mmus)", + "exact_synonyms": [ + "1152 CBX Purkinje Gaba_1" + ] + }, + { + "cl_id": "CL:4301583", + "label": "CBX Purkinje Gaba_2 Purkinje cell (Mmus)", + "exact_synonyms": [ + "1153 CBX Purkinje Gaba_2" + ] + }, + { + "cl_id": "CL:4301584", + "label": "CB Granule Glut_1 cerebellar granule cell (Mmus)", + "exact_synonyms": [ + "1154 CB Granule Glut_1" + ] + }, + { + "cl_id": "CL:4301585", + "label": "CB Granule Glut_2 cerebellar granule cell (Mmus)", + "exact_synonyms": [ + "1155 CB Granule Glut_2" + ] + }, + { + "cl_id": "CL:4301586", + "label": "unipolar brush cell (Mmus)", + "exact_synonyms": [ + "1156 DCO UBC Glut_1", + "315 DCO UBC Glut" + ] + }, + { + "cl_id": "CL:4301589", + "label": "Astro-NT NN_1 astrocyte (Mmus)", + "exact_synonyms": [ + "1159 Astro-NT NN_1" + ] + }, + { + "cl_id": "CL:4301590", + "label": "Astro-NT NN_2 astrocyte (Mmus)", + "exact_synonyms": [ + "1160 Astro-NT NN_2" + ] + }, + { + "cl_id": "CL:4301591", + "label": "Astro-TE NN_1 astrocyte (Mmus)", + "exact_synonyms": [ + "1161 Astro-TE NN_1" + ] + }, + { + "cl_id": "CL:4301592", + "label": "Astro-TE NN_2 astrocyte (Mmus)", + "exact_synonyms": [ + "1162 Astro-TE NN_2" + ] + }, + { + "cl_id": "CL:4301593", + "label": "Astro-TE NN_3 astrocyte (Mmus)", + "exact_synonyms": [ + "1163 Astro-TE NN_3" + ] + }, + { + "cl_id": "CL:4301595", + "label": "Astro-TE NN_5 astrocyte (Mmus)", + "exact_synonyms": [ + "1165 Astro-TE NN_5" + ] + }, + { + "cl_id": "CL:4301596", + "label": "Astro-OLF NN_1 astrocyte (Mmus)", + "exact_synonyms": [ + "1166 Astro-OLF NN_1" + ] + }, + { + "cl_id": "CL:4301597", + "label": "Astro-OLF NN_2 astrocyte (Mmus)", + "exact_synonyms": [ + "1167 Astro-OLF NN_2" + ] + }, + { + "cl_id": "CL:4301598", + "label": "Astro-OLF NN_3 astrocyte (Mmus)", + "exact_synonyms": [ + "1168 Astro-OLF NN_3" + ] + }, + { + "cl_id": "CL:4301602", + "label": "Tanycyte NN_1 tanycyte (Mmus)", + "exact_synonyms": [ + "1172 Tanycyte NN_1" + ] + }, + { + "cl_id": "CL:4301603", + "label": "Tanycyte NN_2 tanycyte (Mmus)", + "exact_synonyms": [ + "1173 Tanycyte NN_2" + ] + }, + { + "cl_id": "CL:4301608", + "label": "choroid plexus epithelial cell (Mmus)", + "exact_synonyms": [ + "1178 CHOR NN_1", + "325 CHOR NN" + ] + }, + { + "cl_id": "CL:4301611", + "label": "commited oligodendrocyte precursor (Mmus)", + "exact_synonyms": [ + "1181 COP NN_1" + ] + }, + { + "cl_id": "CL:4301612", + "label": "newly formed oligodendrocyte (Mmus)", + "exact_synonyms": [ + "1182 NFOL NN_2" + ] + }, + { + "cl_id": "CL:4301613", + "label": "myelin-forming oligodendrocyte (Mmus)", + "exact_synonyms": [ + "1183 MFOL NN_3" + ] + }, + { + "cl_id": "CL:4301614", + "label": "mature myelinating oligodendrocyte (Mmus)", + "exact_synonyms": [ + "1184 MOL NN_4" + ] + }, + { + "cl_id": "CL:4301615", + "label": "olfactory ensheathing cell (Mmus)", + "exact_synonyms": [ + "1185 OEC NN_1", + "32 OEC", + "328 OEC NN" + ] + }, + { + "cl_id": "CL:4301616", + "label": "arachnoid barrier cell (Mmus)", + "exact_synonyms": [ + "1186 ABC NN_1", + "329 ABC NN" + ] + }, + { + "cl_id": "CL:4301625", + "label": "border associated macrophage (Mmus)", + "exact_synonyms": [ + "1195 BAM NN_1", + "335 BAM NN" + ] + }, + { + "cl_id": "CL:4304384", + "label": "hypothalamic gonadotropin-releasing hormone neuron (Mmus)", + "exact_synonyms": [ + "0628 HY Gnrh1 Glut_1", + "142 HY Gnrh1 Glut", + "15 HY Gnrh1 Glut", + "2564 HY Gnrh1 Glut_1" + ] + }, + { + "cl_id": "CL:4306426", + "label": "pinealocyte (Mmus)", + "exact_synonyms": [ + "1030 Pineal Crx Glut_1", + "25 Pineal Glut", + "262 Pineal Crx Glut", + "4606 Pineal Crx Glut_1" + ] + }, + { + "cl_id": "CL:4306992", + "label": "DCO Il22 Gly-Gaba_2 cerebellar neuron (Mmus)", + "exact_synonyms": [ + "1142 DCO Il22 Gly-Gaba_2", + "5172 DCO Il22 Gly-Gaba_2" + ] + }, + { + "cl_id": "CL:4307005", + "label": "CB PLI GABA Ly6d Purkinje layer interneuron", + "exact_synonyms": [ + "1147 CB PLI Gly-Gaba_4", + "5185 CB PLI Gly-Gaba_4" + ] + }, + { + "cl_id": "CL:4307012", + "label": "CBX MLI Cdh22 Gaba molecular layer interneuron (Mmus)", + "exact_synonyms": [ + "1151 CBX MLI Cdh22 Gaba_1", + "312 CBX MLI Cdh22 Gaba", + "5192 CBX MLI Cdh22 Gaba_1" + ] + }, + { + "cl_id": "CL:4307026", + "label": "Bergmann glial cell (Mmus)", + "exact_synonyms": [ + "1157 Bergmann NN_1", + "316 Bergmann NN", + "5206 Bergmann NN_1" + ] + }, + { + "cl_id": "CL:4307027", + "label": "cerebellar astrocyte (Mmus)", + "exact_synonyms": [ + "1158 Astro-CB NN_1", + "317 Astro-CB NN", + "5207 Astro-CB NN_1" + ] + }, + { + "cl_id": "CL:4307028", + "label": "Astro-NT NN_1 Galnt15 astrocyte (Mmus)", + "exact_synonyms": [ + "5208 Astro-NT NN_1" + ] + }, + { + "cl_id": "CL:4307029", + "label": "Astro-NT NN_1 Slc36a2 astrocyte (Mmus)", + "exact_synonyms": [ + "5209 Astro-NT NN_1" + ] + }, + { + "cl_id": "CL:4307030", + "label": "Astro-NT NN_1 Nuf2 astrocyte (Mmus)", + "exact_synonyms": [ + "5210 Astro-NT NN_1" + ] + }, + { + "cl_id": "CL:4307031", + "label": "Astro-NT NN_1 Six3os1 astrocyte (Mmus)", + "exact_synonyms": [ + "5211 Astro-NT NN_1" + ] + }, + { + "cl_id": "CL:4307032", + "label": "Astro-NT NN_1 Kcnk10 astrocyte (Mmus)", + "exact_synonyms": [ + "5212 Astro-NT NN_1" + ] + }, + { + "cl_id": "CL:4307033", + "label": "Astro-NT NN_1 Mecom astrocyte (Mmus)", + "exact_synonyms": [ + "5213 Astro-NT NN_1" + ] + }, + { + "cl_id": "CL:4307034", + "label": "Astro-NT NN_2 Fzd2 astrocyte (Mmus)", + "exact_synonyms": [ + "5214 Astro-NT NN_2" + ] + }, + { + "cl_id": "CL:4307035", + "label": "Astro-NT NN_2 Sez6l astrocyte (Mmus)", + "exact_synonyms": [ + "5215 Astro-NT NN_2" + ] + }, + { + "cl_id": "CL:4307036", + "label": "Astro-NT NN_2 Fam227b astrocyte (Mmus)", + "exact_synonyms": [ + "5216 Astro-NT NN_2" + ] + }, + { + "cl_id": "CL:4307037", + "label": "Astro-NT NN_2 Gm30524 astrocyte (Mmus)", + "exact_synonyms": [ + "5217 Astro-NT NN_2" + ] + }, + { + "cl_id": "CL:4307038", + "label": "Astro-TE NN_1 Myoc astrocyte (Mmus)", + "exact_synonyms": [ + "5218 Astro-TE NN_1" + ] + }, + { + "cl_id": "CL:4307039", + "label": "Astro-TE NN_1 Rasl10b astrocyte (Mmus)", + "exact_synonyms": [ + "5219 Astro-TE NN_1" + ] + }, + { + "cl_id": "CL:4307040", + "label": "Astro-TE NN_1 Lncpint astrocyte (Mmus)", + "exact_synonyms": [ + "5220 Astro-TE NN_1" + ] + }, + { + "cl_id": "CL:4307041", + "label": "Astro-TE NN_1 Jph4 astrocyte (Mmus)", + "exact_synonyms": [ + "5221 Astro-TE NN_1" + ] + }, + { + "cl_id": "CL:4307042", + "label": "Astro-TE NN_2 Clstn2 astrocyte (Mmus)", + "exact_synonyms": [ + "5222 Astro-TE NN_2" + ] + }, + { + "cl_id": "CL:4307043", + "label": "Astro-TE NN_2 Mcm6 astrocyte (Mmus)", + "exact_synonyms": [ + "5223 Astro-TE NN_2" + ] + }, + { + "cl_id": "CL:4307044", + "label": "Astro-TE NN_3 Cxcl5 astrocyte (Mmus)", + "exact_synonyms": [ + "5224 Astro-TE NN_3" + ] + }, + { + "cl_id": "CL:4307045", + "label": "Astro-TE NN_3 Fam163a astrocyte (Mmus)", + "exact_synonyms": [ + "5225 Astro-TE NN_3" + ] + }, + { + "cl_id": "CL:4307046", + "label": "Astro-TE NN_3 Zic4 astrocyte (Mmus)", + "exact_synonyms": [ + "5226 Astro-TE NN_3" + ] + }, + { + "cl_id": "CL:4307047", + "label": "Astro-TE NN_3 Crym astrocyte (Mmus)", + "exact_synonyms": [ + "5227 Astro-TE NN_3" + ] + }, + { + "cl_id": "CL:4307048", + "label": "Astro-TE NN_4 astrocyte (Mmus)", + "exact_synonyms": [ + "1164 Astro-TE NN_4", + "5228 Astro-TE NN_4" + ] + }, + { + "cl_id": "CL:4307049", + "label": "Astro-TE NN_5 Hs3st3a1 astrocyte (Mmus)", + "exact_synonyms": [ + "5229 Astro-TE NN_5" + ] + }, + { + "cl_id": "CL:4307050", + "label": "Astro-TE NN_5 Adamts18 astrocyte (Mmus)", + "exact_synonyms": [ + "5230 Astro-TE NN_5" + ] + }, + { + "cl_id": "CL:4307051", + "label": "Astro-OLF NN_1 Greb1 astrocyte (Mmus)", + "exact_synonyms": [ + "5231 Astro-OLF NN_1" + ] + }, + { + "cl_id": "CL:4307052", + "label": "Astro-OLF NN_1 Stk32a astrocyte (Mmus)", + "exact_synonyms": [ + "5232 Astro-OLF NN_1" + ] + }, + { + "cl_id": "CL:4307053", + "label": "Astro-OLF NN_2 Slc25a34 astrocyte (Mmus)", + "exact_synonyms": [ + "5233 Astro-OLF NN_2" + ] + }, + { + "cl_id": "CL:4307054", + "label": "Astro-OLF NN_2 Alk astrocyte (Mmus)", + "exact_synonyms": [ + "5234 Astro-OLF NN_2" + ] + }, + { + "cl_id": "CL:4307055", + "label": "Astro-OLF NN_3 Ecrg4 astrocyte (Mmus)", + "exact_synonyms": [ + "5235 Astro-OLF NN_3" + ] + }, + { + "cl_id": "CL:4307056", + "label": "Astro-OLF NN_3 Sfrp1 astrocyte (Mmus)", + "exact_synonyms": [ + "5236 Astro-OLF NN_3" + ] + }, + { + "cl_id": "CL:4307063", + "label": "Tanycyte NN_1 Cnmd tanycyte of subfornical organ (Mmus)", + "exact_synonyms": [ + "5243 Tanycyte NN_1" + ] + }, + { + "cl_id": "CL:4307064", + "label": "Tanycyte NN_1 Glp1r tanycyte (Mmus)", + "exact_synonyms": [ + "5244 Tanycyte NN_1" + ] + }, + { + "cl_id": "CL:4307065", + "label": "Tanycyte NN_2 Mylk3 alpha1-tanycyte (Mmus)", + "exact_synonyms": [ + "5245 Tanycyte NN_2" + ] + }, + { + "cl_id": "CL:4307066", + "label": "Tanycyte NN_2 Mroh5 alpha1-tanycyte (Mmus)", + "exact_synonyms": [ + "5246 Tanycyte NN_2" + ] + }, + { + "cl_id": "CL:4307067", + "label": "alpha2-tanycyte (Mmus)", + "exact_synonyms": [ + "5247 Tanycyte NN_2" + ] + }, + { + "cl_id": "CL:4307068", + "label": "Tanycyte NN_2 Otx2 tanycyte (Mmus)", + "exact_synonyms": [ + "5248 Tanycyte NN_2" + ] + }, + { + "cl_id": "CL:4307069", + "label": "beta1-tancyte (Mmus)", + "exact_synonyms": [ + "5249 Tanycyte NN_2" + ] + }, + { + "cl_id": "CL:4307070", + "label": "beta-2 tanycyte (Mmus)", + "exact_synonyms": [ + "1174 Tanycyte NN_3", + "5250 Tanycyte NN_3" + ] + }, + { + "cl_id": "CL:4307083", + "label": "hypendemal cell (Mmus)", + "exact_synonyms": [ + "1177 Hypendymal NN_1", + "324 Hypendymal NN", + "5263 Hypendymal NN_1" + ] + }, + { + "cl_id": "CL:4307084", + "label": "CHOR NN_1 Tbc1d1 choroid plexus epithelial cell (Mmus)", + "exact_synonyms": [ + "5264 CHOR NN_1" + ] + }, + { + "cl_id": "CL:4307085", + "label": "CHOR NN_1 Slc17a8 choroid plexus epithelial cell (Mmus)", + "exact_synonyms": [ + "5265 CHOR NN_1" + ] + }, + { + "cl_id": "CL:4307086", + "label": "OPC NN_1 Neil3 oligodendrocyte precursor cell (Mmus)", + "exact_synonyms": [ + "5266 OPC NN_1" + ] + }, + { + "cl_id": "CL:4307087", + "label": "OPC NN_1 Irx2 oligodendrocyte precursor cell (Mmus)", + "exact_synonyms": [ + "5267 OPC NN_1" + ] + }, + { + "cl_id": "CL:4307088", + "label": "OPC NN_1 Mms22l oligodendrocyte precursor cell (Mmus)", + "exact_synonyms": [ + "5268 OPC NN_1" + ] + }, + { + "cl_id": "CL:4307089", + "label": "OPC NN_1 Col27a1 oligodendrocyte precursor cell (Mmus)", + "exact_synonyms": [ + "5269 OPC NN_1" + ] + }, + { + "cl_id": "CL:4307090", + "label": "OPC NN_1 Rmi2 oligodendrocyte precursor cell (Mmus)", + "exact_synonyms": [ + "5270 OPC NN_1" + ] + }, + { + "cl_id": "CL:4307091", + "label": "OPC NN_2 oligodendrocyte precursor cell (Mmus)", + "exact_synonyms": [ + "1180 OPC NN_2", + "5271 OPC NN_2" + ] + }, + { + "cl_id": "CL:4307092", + "label": "COP NN_1 Rgcc committed oligodendrocyte precursor (Mmus)", + "exact_synonyms": [ + "5272 COP NN_1" + ] + }, + { + "cl_id": "CL:4307093", + "label": "COP NN_1 9130019P16Rik committed oligodendrocyte precursor (Mmus)", + "exact_synonyms": [ + "5273 COP NN_1" + ] + }, + { + "cl_id": "CL:4307094", + "label": "COP NN_1 C1ql1 committed oligodendrocyte precursor (Mmus)", + "exact_synonyms": [ + "5274 COP NN_1" + ] + }, + { + "cl_id": "CL:4307095", + "label": "COP NN_1 Bmp4 committed oligodendrocyte precursor (Mmus)", + "exact_synonyms": [ + "5275 COP NN_1" + ] + }, + { + "cl_id": "CL:4307096", + "label": "COP NN_1 Vwc2 committed oligodendrocyte precursor (Mmus)", + "exact_synonyms": [ + "5276 COP NN_1" + ] + }, + { + "cl_id": "CL:4307097", + "label": "COP NN_1 Cck committed oligodendrocyte precursor (Mmus)", + "exact_synonyms": [ + "5277 COP NN_1" + ] + }, + { + "cl_id": "CL:4307098", + "label": "NFOL NN_2 9630013A20Rik newly formed oligodendrocyte (Mmus)", + "exact_synonyms": [ + "5278 NFOL NN_2" + ] + }, + { + "cl_id": "CL:4307099", + "label": "NFOL NN_2 Dbx2 newly formed oligodendrocyte (Mmus)", + "exact_synonyms": [ + "5279 NFOL NN_2" + ] + }, + { + "cl_id": "CL:4307100", + "label": "NFOL NN_2 Rgs16 newly formed oligodendrocyte (Mmus)", + "exact_synonyms": [ + "5280 NFOL NN_2" + ] + }, + { + "cl_id": "CL:4307101", + "label": "NFOL NN_2 Il23a newly formed oligodendrocyte (Mmus)", + "exact_synonyms": [ + "5281 NFOL NN_2" + ] + }, + { + "cl_id": "CL:4307102", + "label": "MFOL NN_3 Cxcl12 myelin-forming oligodendrocyte (Mmus)", + "exact_synonyms": [ + "5282 MFOL NN_3" + ] + }, + { + "cl_id": "CL:4307103", + "label": "MFOL NN_3 Il23a myelin-forming oligodendrocyte (Mmus)", + "exact_synonyms": [ + "5283 MFOL NN_3" + ] + }, + { + "cl_id": "CL:4307104", + "label": "MOL NN_4 Plin3 mature myelinating oligodendrocyte (Mmus)", + "exact_synonyms": [ + "5284 MOL NN_4" + ] + }, + { + "cl_id": "CL:4307105", + "label": "MOL NN_4 Spock3 mature myelinating oligodendrocyte (Mmus)", + "exact_synonyms": [ + "5285 MOL NN_4" + ] + }, + { + "cl_id": "CL:4307106", + "label": "MOL NN_4 Art3 mature myelinating oligodendrocyte (Mmus)", + "exact_synonyms": [ + "5286 MOL NN_4" + ] + }, + { + "cl_id": "CL:4307107", + "label": "MOL NN_4 Il33 mature myelinating oligodendrocyte (Mmus)", + "exact_synonyms": [ + "5287 MOL NN_4" + ] + }, + { + "cl_id": "CL:4307108", + "label": "MOL NN_4 Sspo mature myelinating oligodendrocyte (Mmus)", + "exact_synonyms": [ + "5288 MOL NN_4" + ] + }, + { + "cl_id": "CL:4307109", + "label": "OEC NN_1 Adamts12 olfactory ensheathing cell (Mmus)", + "exact_synonyms": [ + "5289 OEC NN_1" + ] + }, + { + "cl_id": "CL:4307110", + "label": "OEC NN_1 Gdpd4 olfactory ensheathing cell (Mmus)", + "exact_synonyms": [ + "5290 OEC NN_1" + ] + }, + { + "cl_id": "CL:4307111", + "label": "OEC NN_1 A330076C08Rik olfactory ensheathing cell (Mmus)", + "exact_synonyms": [ + "5291 OEC NN_1" + ] + }, + { + "cl_id": "CL:4307112", + "label": "OEC NN_1 Rasgef1c olfactory ensheathing cell (Mmus)", + "exact_synonyms": [ + "5292 OEC NN_1" + ] + }, + { + "cl_id": "CL:4307113", + "label": "ABC NN_1 Pde11a arachnoid barrier cell (Mmus)", + "exact_synonyms": [ + "5293 ABC NN_1" + ] + }, + { + "cl_id": "CL:4307114", + "label": "ABC NN_1 Dapl1 arachnoid barrier cell (Mmus)", + "exact_synonyms": [ + "5294 ABC NN_1" + ] + }, + { + "cl_id": "CL:4307115", + "label": "ABC NN_1 Cubn arachnoid barrier cell (Mmus)", + "exact_synonyms": [ + "5295 ABC NN_1" + ] + }, + { + "cl_id": "CL:4307132", + "label": "microglial cell (Mmus)", + "exact_synonyms": [ + "1194 Microglia NN_1", + "334 Microglia NN", + "5312 Microglia NN_1" + ] + }, + { + "cl_id": "CL:4307133", + "label": "BAM NN_1 Mrc1 border associated macrophage (Mmus)", + "exact_synonyms": [ + "5313 BAM NN_1" + ] + }, + { + "cl_id": "CL:4307134", + "label": "BAM NN_1 Fos border associated macrophage (Mmus)", + "exact_synonyms": [ + "5314 BAM NN_1" + ] + }, + { + "cl_id": "CL:4310083", + "label": "GPin-BF cholinergic-GABAergic neuron (Primate)", + "exact_synonyms": [ + "GPin-BF Cholinergic GABA" + ] + }, + { + "cl_id": "CL:4310084", + "label": "striatal LAMP5 CXCL14 GABAergic interneuron (Primate)", + "exact_synonyms": [ + "CN LAMP5-CXCL14 GABA", + "LAMP5", + "LAMP5-CXCL14 GABA" + ] + }, + { + "cl_id": "CL:4310085", + "label": "striatal LAMP5 LHX6 GABAergic interneuron (Primate)", + "exact_synonyms": [ + "CN LAMP5-LHX6 GABA", + "LAMP5-LHX6 GABA" + ] + }, + { + "cl_id": "CL:4310088", + "label": "BF SKOR1 Glut glutamatergic neuron of the basal ganglia (Primate)", + "exact_synonyms": [ + "BF SKOR1 Glut" + ] + }, + { + "cl_id": "CL:4310093", + "label": "arkypallidal neuron (Primate)", + "exact_synonyms": [ + "CN MEIS2 GABA", + "GPe MEIS2-SOX6 GABA" + ] + }, + { + "cl_id": "CL:4310094", + "label": "prototypic neuron (Primate)", + "exact_synonyms": [ + "GPe SOX6-CTXND1 GABA" + ] + }, + { + "cl_id": "CL:4310095", + "label": "GPi Core neuron (Primate)", + "exact_synonyms": [ + "CN ONECUT1 GABA", + "GPi Core" + ] + }, + { + "cl_id": "CL:4310096", + "label": "GPi Shell neuron (Primate)", + "exact_synonyms": [ + "CN GABA-Glut", + "GPi Shell", + "Subpallium GABA-Glut" + ] + }, + { + "cl_id": "CL:4310100", + "label": "GPe-NDB-SI LHX6-LHX8-GBX1 GABA GABAergic interneuron (Primate)", + "exact_synonyms": [ + "GPe-NDB-SI LHX6-LHX8-GBX1 GABA" + ] + }, + { + "cl_id": "CL:4310104", + "label": "Islands of Calleja granule cell (Primate)", + "exact_synonyms": [ + "D1-ICj (Islands of Calleja)", + "OT D1 ICj", + "OT Granular GABA" + ] + }, + { + "cl_id": "CL:4310109", + "label": "SN-VTR CALB1 Dopa substantia nigra dopaminergic neuron (Primate)", + "exact_synonyms": [ + "SN-VTR CALB1 Dopa" + ] + }, + { + "cl_id": "CL:4310110", + "label": "SN EBF2 GABA GABAergic interneuron (Primate)", + "exact_synonyms": [ + "SN EBF2 GABA" + ] + }, + { + "cl_id": "CL:4310111", + "label": "SN-VTR GAD2 Dopa dopaminergic neuron (Primate)", + "exact_synonyms": [ + "SN-VTR GAD2 Dopa" + ] + }, + { + "cl_id": "CL:4310112", + "label": "SN GATA3-PAX8 GABA GABAergic interneuron (Primate)", + "exact_synonyms": [ + "SN GATA3-PAX8 GABA", + "pSNpr" + ] + }, + { + "cl_id": "CL:4310113", + "label": "SN GATA3-PVALB GABA GABAergic neuron (Primate)", + "exact_synonyms": [ + "SN GATA3-PVALB GABA", + "aSNpr" + ] + }, + { + "cl_id": "CL:4310114", + "label": "SN SEMA5A GABA GABAergic interneuron (Primate)", + "exact_synonyms": [ + "SN SEMA5A GABA" + ] + }, + { + "cl_id": "CL:4310115", + "label": "SN SOX6 Dopa substantia nigra dopaminergic neuron (Primate)", + "exact_synonyms": [ + "SN SOX6 Dopa" + ] + }, + { + "cl_id": "CL:4310117", + "label": "SN-VTR-HTH GATA3-TCF7L2 GABA GABAergic interneuron (Primate)", + "exact_synonyms": [ + "SN-VTR-HTH GATA3-TCF7L2 GABA" + ] + }, + { + "cl_id": "CL:4310118", + "label": "STH PVALB-PITX2 Glut glutamatergic neuron of the basal ganglia (Primate)", + "exact_synonyms": [ + "STH PVALB-PITX2 Glut" + ] + }, + { + "cl_id": "CL:4310120", + "label": "striatal pthlh-expressing interneuron (Primate)", + "exact_synonyms": [ + "FS", + "Pvalb Pthlh", + "STR FS PTHLH-PVALB GABA" + ] + }, + { + "cl_id": "CL:4310121", + "label": "striatal SST-LYPD6-RSPO2 GABAergic interneuron (Primate)", + "exact_synonyms": [ + "STR LYPD6-RSPO2 GABA" + ] + }, + { + "cl_id": "CL:4310122", + "label": "striatal SST-ADARB2 GABAergic interneuron (Primate)", + "exact_synonyms": [ + "STR SST GABA", + "STR SST-ADARB2 GABA" + ] + }, + { + "cl_id": "CL:4310123", + "label": "striatal SST-CHODL GABAergic interneuron (Primate)", + "exact_synonyms": [ + "LTS", + "STR SST-CHODL GABA", + "Sst Chodl" + ] + }, + { + "cl_id": "CL:4310124", + "label": "striatal SST-RSPO2 GABAergic interneuron (Primate)", + "exact_synonyms": [ + "STR SST-RSPO2 GABA" + ] + }, + { + "cl_id": "CL:4310125", + "label": "STR TAC3-PLPP4 GABA TAC3-positive striatal interneuron (Primate)", + "exact_synonyms": [ + "LHX6 TAC3", + "STR TAC3-PLPP4 GABA" + ] + }, + { + "cl_id": "CL:4310126", + "label": "STR-BF TAC3-PLPP4-LHX8 GABA TAC3-positive striatal interneuron (Primate)", + "exact_synonyms": [ + "STR-BF TAC3-PLPP4-LHX8 GABA" + ] + }, + { + "cl_id": "CL:4310127", + "label": "striatal VIP GABAergic interneuron (Primate)", + "exact_synonyms": [ + "CN VIP GABA", + "VIP", + "VIP GABA" + ] + }, + { + "cl_id": "CL:4310128", + "label": "STRd cholinergic-GABAergic neuron (Primate)", + "exact_synonyms": [ + "STRd Cholinergic GABA" + ] + }, + { + "cl_id": "CL:4310129", + "label": "STRd D1 Matrix medium spiny neuron (Primate)", + "exact_synonyms": [ + "D1-Matrix", + "STRd D1 Matrix MSN" + ] + }, + { + "cl_id": "CL:4310130", + "label": "striosomal D1 medium spiny neuron (Primate)", + "exact_synonyms": [ + "D1-Striosome", + "STRd D1 Striosome MSN" + ] + }, + { + "cl_id": "CL:4310131", + "label": "STRd D1/D2-hybrid medium spiny neuron (Primate)", + "exact_synonyms": [ + "D1/D2 Hybrid", + "STR D1D2 Hybrid MSN" + ] + }, + { + "cl_id": "CL:4310132", + "label": "STRd D2 Matrix medium spiny neuron (Primate)", + "exact_synonyms": [ + "D2-Matrix", + "STRd D2 Matrix MSN" + ] + }, + { + "cl_id": "CL:4310133", + "label": "STRd D2 Striomat hybrid medium spiny neuron (Primate)", + "exact_synonyms": [ + "STRd D2 StrioMat Hybrid MSN" + ] + }, + { + "cl_id": "CL:4310134", + "label": "striosomal D2 medium spiny neuron (Primate)", + "exact_synonyms": [ + "D2-Striosome", + "STRd D2 Striosome MSN" + ] + }, + { + "cl_id": "CL:4310135", + "label": "STR cholinergic-GABAergic neuron (Primate)", + "exact_synonyms": [ + "STR Cholinergic GABA" + ] + }, + { + "cl_id": "CL:4310136", + "label": "STRv D1 medium spiny neuron (Primate)", + "exact_synonyms": [ + "D1-Shell/OT", + "STRv D1 MSN" + ] + }, + { + "cl_id": "CL:4310137", + "label": "STRv D1-NUDAP medium spiny neuron (Primate)", + "exact_synonyms": [ + "D1-NUDAP", + "STRv D1 NUDAP MSN" + ] + }, + { + "cl_id": "CL:4310138", + "label": "STRv D2 medium spiny neuron (Primate)", + "exact_synonyms": [ + "D2-Shell/OT", + "STRv D2 MSN" + ] + }, + { + "cl_id": "CL:4310143", + "label": "ZI-HTH GABA GABAergic interneuron (Primate)", + "exact_synonyms": [ + "ZI-HTH GABA" + ] + }, + { + "cl_id": "CL:4310144", + "label": "VTR-HTH Glut glutamatergic neuron of the basal ganglia (Primate)", + "exact_synonyms": [ + "F M Glut", + "VTR-HTH Glut" + ] + }, + { + "cl_id": "CL:4310145", + "label": "AMY-SLEA-BNST D1 GABA GABAergic interneuron (Primate)", + "exact_synonyms": [ + "AMY-SLEA-BNST D1 GABA" + ] + }, + { + "cl_id": "CL:4310146", + "label": "AMY-SLEA-BNST GABA GABAergic interneuron (Primate)", + "exact_synonyms": [ + "AMY-SLEA-BNST GABA" + ] + }, + { + "cl_id": "CL:4310147", + "label": "OB Dopa-GABA neuron (Primate)", + "exact_synonyms": [ + "OB Dopa-GABA" + ] + }, + { + "cl_id": "CL:4310148", + "label": "OB FRMD7 GABA GABAergic neuron (Primate)", + "exact_synonyms": [ + "OB FRMD7 GABA" + ] + }, + { + "cl_id": "CL:7770002", + "label": "juxtacanalicular tissue cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:7770003", + "label": "beam A cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:7770004", + "label": "suprabasal cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:7770005", + "label": "beam cell", + "exact_synonyms": [] + }, + { + "cl_id": "CL:7770006", + "label": "beam B cell, human", + "exact_synonyms": [] + } + ] +} diff --git a/reports/cl_term_issues.md b/reports/cl_term_issues.md index 1a3ec3f..8c0ef14 100644 --- a/reports/cl_term_issues.md +++ b/reports/cl_term_issues.md @@ -109,7 +109,7 @@ subtypes, not on the class itself. ### Missing human-specific "group 1 innate lymphoid cell" term **Repo issue:** [#14 Missing human-specific 'group 1 innate lymphoid cell' term (CL)](https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14) -**Reference:** SOULCAP `ILC1` row ([data/marker_combinations.csv](../data/marker_combinations.csv)); [reports/candidate_cl_mappings.md](candidate_cl_mappings.md#ilc-family--innate-lymphoid-cells) +**Reference:** SOULCAP `ILC1` row ([data/marker_combinations.csv](../data/marker_combinations.csv)); [reports/candidate_cl_mappings.md](candidate_cl_mappings_narrative.md#ilc-family--innate-lymphoid-cells) **Status:** Filed as a repo issue — not yet filed upstream to `obophenotype/cell-ontology` **Rationale:** CL distinguishes species-specific variants for two of the diff --git a/reports/evaluation-alias/matcher_evaluation.json b/reports/evaluation-alias/matcher_evaluation.json new file mode 100644 index 0000000..6757c43 --- /dev/null +++ b/reports/evaluation-alias/matcher_evaluation.json @@ -0,0 +1,83216 @@ +{ + "schema_version": 1, + "generated_utc": "2026-09-10T19:46:00.594110+00:00", + "inputs": { + "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44", + "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8", + "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e", + "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c", + "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706", + "marker_map": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7" + }, + "benchmark_path": "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\matcher_benchmark.tsv", + "matcher": { + "version": "0.1.0", + "source_hashes": { + "cl_match.py": "1bec5e9d880cfd34574ae55dfde29d4b62c745e9649a9b5d292d5697d848649f", + "phenotype.py": "6d3e7e59b884365fa48596fe1365b8630053b70a6259bb0e8f42413a55a9514a", + "marker_syntax.py": "e40620b1d804eec3c1f05251716092abd7f5a273e11ba91ce61a3345b1872ade", + "registry.py": "a225ca650e0278378566bf7134b3d8daa33dabee0c61c3d479d8affddf7a25fd", + "evaluation.py": "ad643e2b29d58e07d3e16b9c8aca15723f160cad346c751597cf52dec9526b25", + "audit.py": "86a7f3978446fe1122eec579b5a4c41ea3adf0086b5bcb642c195104e4125d4d", + "candidate_index.py": "b8ede03e76d0df09fd8735d1d45178c77a977c6ae40a61c38478bbb4be737ddc" + } + }, + "config": { + "ks": [ + 1, + 3, + 5 + ], + "ranking": "production order, including disqualified candidates", + "ties": "primary metrics use production order; bounds report tie sensitivity", + "denominator": "all cohort cases, including unscorable profiles and absent targets", + "marker_resolution": true, + "local_lexical": false, + "lexical_limit": 20, + "lexical_min_jaccard": 0.5 + }, + "candidate_count": 826, + "marker_resolution_issues": [ + { + "marker": "CD1D-A-GALCER", + "reason": "multiple_or_missing_protein", + "pro_ids": [] + }, + { + "marker": "CD57", + "reason": "multiple_or_missing_protein", + "pro_ids": [] + }, + { + "marker": "HLA-DR", + "reason": "complex_or_reagent", + "pro_ids": [ + "PR:000002015" + ] + }, + { + "marker": "IGA", + "reason": "multiple_or_missing_protein", + "pro_ids": [] + }, + { + "marker": "IGD", + "reason": "multiple_or_missing_protein", + "pro_ids": [] + }, + { + "marker": "IGE", + "reason": "multiple_or_missing_protein", + "pro_ids": [] + }, + { + "marker": "IGG", + "reason": "multiple_or_missing_protein", + "pro_ids": [] + }, + { + "marker": "IGM", + "reason": "multiple_or_missing_protein", + "pro_ids": [] + }, + { + "marker": "MR1", + "reason": "complex_or_reagent", + "pro_ids": [ + "PR:Q95460" + ] + }, + { + "marker": "TCR", + "reason": "multiple_or_missing_protein", + "pro_ids": [] + }, + { + "marker": "TCRAB", + "reason": "complex_or_reagent", + "pro_ids": [] + }, + { + "marker": "TCRGD", + "reason": "complex_or_reagent", + "pro_ids": [] + }, + { + "marker": "TETRAMER", + "reason": "complex_or_reagent", + "pro_ids": [] + }, + { + "marker": "V", + "reason": "complex_or_reagent", + "pro_ids": [] + }, + { + "marker": "DELTA", + "reason": "complex_or_reagent", + "pro_ids": [] + }, + { + "marker": "DELTA1", + "reason": "complex_or_reagent", + "pro_ids": [] + }, + { + "marker": "GAMMA", + "reason": "complex_or_reagent", + "pro_ids": [] + }, + { + "marker": "CCR4", + "reason": "ambiguous_alias", + "owners": [ + "CCR4", + "CD194" + ] + }, + { + "marker": "CD194", + "reason": "ambiguous_alias", + "owners": [ + "CCR4", + "CD194" + ] + }, + { + "marker": "CCR6", + "reason": "ambiguous_alias", + "owners": [ + "CCR6", + "CD196" + ] + }, + { + "marker": "CD196", + "reason": "ambiguous_alias", + "owners": [ + "CCR6", + "CD196" + ] + }, + { + "marker": "CD183", + "reason": "ambiguous_alias", + "owners": [ + "CD183", + "CXCR3" + ] + }, + { + "marker": "CXCR3", + "reason": "ambiguous_alias", + "owners": [ + "CD183", + "CXCR3" + ] + }, + { + "marker": "CD185", + "reason": "ambiguous_alias", + "owners": [ + "CD185", + "CXCR5" + ] + }, + { + "marker": "CXCR5", + "reason": "ambiguous_alias", + "owners": [ + "CD185", + "CXCR5" + ] + } + ], + "cases": [ + { + "case_id": "provisional/SOULCAP:SC000001/Exact", + "cohort": "provisional", + "subject_id": "SOULCAP:SC000001", + "match_type": "Exact", + "targets": [ + "CL:0000623" + ], + "evidence_reference": "mappings/curated_mappings.tsv", + "uncertain": false, + "rank": 6, + "rank_best": 6, + "rank_worst": 32, + "missing_targets": [], + "candidates": [ + { + "cl_id": "CL:0002338", + "label": "CD56-positive, CD161-positive immature natural killer cell, human", + "score": 23, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD34-", + "CD3-", + "CD19-", + "CD56+ (1 of 2 alt.)" + ], + "gaps": [ + "CD45+", + "CD127-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD123-", + "CD33-/CD64- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 3, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [ + { + "sense": "negative", + "pr": "PR:000001002", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001003", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD34", + "tokens": [ + "CD34" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001003", + "tokens": [ + "CD34" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3", + "tokens": [ + "CD3" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001020", + "tokens": [ + "CD3" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001289", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD20", + "tokens": [ + "CD20" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001289", + "tokens": [ + "CD20" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001889", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD14", + "tokens": [ + "CD14" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001889", + "tokens": [ + "CD14" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001024", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001381", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD122", + "tokens": [ + "CD122" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001874", + "asserted": "True", + "paths": [] + }, + { + "sense": "positive", + "pr": "PR:000002065", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD117", + "tokens": [ + "CD117" + ] + }, + { + "via": "pro_id", + "pr": "PR:000002065", + "tokens": [ + "CD117" + ] + } + ] + } + ] + }, + { + "cl_id": "CL:0000938", + "label": "CD16-negative, CD56-bright natural killer cell, human", + "score": 19, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD3-", + "CD19-", + "CD56+ (hi) (1 of 2 alt.)" + ], + "gaps": [ + "CD34-", + "CD45+", + "CD127-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD123-", + "CD33-/CD64- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 3, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [ + { + "sense": "high", + "pr": "PR:000001024", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001002", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3", + "tokens": [ + "CD3" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001020", + "tokens": [ + "CD3" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001289", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD20", + "tokens": [ + "CD20" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001289", + "tokens": [ + "CD20" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001483", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD16", + "tokens": [ + "CD16" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001483", + "tokens": [ + "CD16" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001889", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD14", + "tokens": 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"below_top_5": 42, + "hit_at_5": 19, + "invalid_profile": 6, + "target_not_in_index": 13 + }, + "cases_with_missing_targets": 15, + "top1_disqualified": 0, + "hit_at_1": 0.0875, + "hit_at_1_optimistic": 0.125, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.15, + "hit_at_3_optimistic": 0.2, + "hit_at_3_pessimistic": 0.0875, + "hit_at_5": 0.2375, + "hit_at_5_optimistic": 0.275, + "hit_at_5_pessimistic": 0.1 + } + }, + "by_relation": { + "reviewed/Exact": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Broad": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Exact": { + "cases": 50, + "mrr": 0.15217520145714408, + "statuses": { + "below_top_5": 26, + "hit_at_5": 12, + "invalid_profile": 6, + "target_not_in_index": 6 + }, + "cases_with_missing_targets": 8, + "top1_disqualified": 0, + "hit_at_1": 0.08, + "hit_at_1_optimistic": 0.14, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.16, + "hit_at_3_optimistic": 0.18, + "hit_at_3_pessimistic": 0.08, + "hit_at_5": 0.24, + "hit_at_5_optimistic": 0.24, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Broad": { + "cases": 30, + "mrr": 0.1528000829961614, + "statuses": { + "hit_at_5": 7, + "below_top_5": 16, + "target_not_in_index": 7 + }, + "cases_with_missing_targets": 7, + "top1_disqualified": 0, + "hit_at_1": 0.1, + "hit_at_1_optimistic": 0.1, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.13333333333333333, + "hit_at_3_optimistic": 0.23333333333333334, + "hit_at_3_pessimistic": 0.1, + "hit_at_5": 0.23333333333333334, + "hit_at_5_optimistic": 0.3333333333333333, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + } + } +} diff --git a/reports/evaluation-alias/matcher_evaluation.md b/reports/evaluation-alias/matcher_evaluation.md new file mode 100644 index 0000000..5ed8fdf --- /dev/null +++ b/reports/evaluation-alias/matcher_evaluation.md @@ -0,0 +1,195 @@ +# Matcher evaluation + +Target retrieval only; provisional agreement is not validated accuracy. +All cohort cases remain in denominators, including invalid profiles and absent targets. +Primary ranks retain production tie ordering and disqualified candidates. Bounds show tie sensitivity. + +## Metrics + +```json +{ + "reviewed": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional": { + "cases": 80, + "mrr": 0.1524095320342756, + "statuses": { + "below_top_5": 42, + "hit_at_5": 19, + "invalid_profile": 6, + "target_not_in_index": 13 + }, + "cases_with_missing_targets": 15, + "top1_disqualified": 0, + "hit_at_1": 0.0875, + "hit_at_1_optimistic": 0.125, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.15, + "hit_at_3_optimistic": 0.2, + "hit_at_3_pessimistic": 0.0875, + "hit_at_5": 0.2375, + "hit_at_5_optimistic": 0.275, + "hit_at_5_pessimistic": 0.1 + } +} +``` + +## Relation breakdown + +```json +{ + "reviewed/Exact": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Broad": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Exact": { + "cases": 50, + "mrr": 0.15217520145714408, + "statuses": { + "below_top_5": 26, + "hit_at_5": 12, + "invalid_profile": 6, + "target_not_in_index": 6 + }, + "cases_with_missing_targets": 8, + "top1_disqualified": 0, + "hit_at_1": 0.08, + "hit_at_1_optimistic": 0.14, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.16, + "hit_at_3_optimistic": 0.18, + "hit_at_3_pessimistic": 0.08, + "hit_at_5": 0.24, + "hit_at_5_optimistic": 0.24, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Broad": { + "cases": 30, + "mrr": 0.1528000829961614, + "statuses": { + "hit_at_5": 7, + "below_top_5": 16, + "target_not_in_index": 7 + }, + "cases_with_missing_targets": 7, + "top1_disqualified": 0, + "hit_at_1": 0.1, + "hit_at_1_optimistic": 0.1, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.13333333333333333, + "hit_at_3_optimistic": 0.23333333333333334, + "hit_at_3_pessimistic": 0.1, + "hit_at_5": 0.23333333333333334, + "hit_at_5_optimistic": 0.3333333333333333, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + } +} +``` + +See matcher_evaluation.tsv for per-case failures and matcher_evaluation.json for full evidence and provenance. diff --git a/reports/evaluation-alias/matcher_evaluation.tsv b/reports/evaluation-alias/matcher_evaluation.tsv new file mode 100644 index 0000000..d07d19f --- /dev/null +++ b/reports/evaluation-alias/matcher_evaluation.tsv @@ -0,0 +1,81 @@ +case_id cohort subject_id match_type targets status rank rank_best rank_worst missing_targets note candidates target_results +provisional/SOULCAP:SC000001/Exact provisional SOULCAP:SC000001 Exact "[""CL:0000623""]" below_top_5 6 6 32 [] "[{""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001381"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD122"", ""tokens"": [""CD122""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (hi) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001020"", ""tokens"": [""CD3""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD16"", ""tokens"": [""CD16""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001483"", ""tokens"": [""CD16""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]}, {""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""low"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", 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""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000001408"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD38"", ""tokens"": [""CD38""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001408"", ""tokens"": [""CD38""]}]}, {""sense"": ""high"", ""pr"": ""PR:000001932"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3"", ""tokens"": [""CD3""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", 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""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000002980"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001013"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}]}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""True"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001935"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}]}]" [] +provisional/SOULCAP:SC000046/Broad provisional SOULCAP:SC000046 Broad "[""CL:4052055""]" below_top_5 34 2 34 [] "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000002980"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001013"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}]}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""True"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}]}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": 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""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}]}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:P13591"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", 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""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}]}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4-"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:P13591"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}]}], ""rank"": 54, ""rank_best"": 30, ""rank_worst"": 54}]" +provisional/SOULCAP:SC000054/Broad provisional SOULCAP:SC000054 Broad "[""CL:4052055""]" below_top_5 34 2 34 [] "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000002980"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001013"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, 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""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}]}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:P13591"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}]}], ""rank"": 34, ""rank_best"": 2, ""rank_worst"": 34}]" +provisional/SOULCAP:SC000055/Broad provisional SOULCAP:SC000055 Broad "[""CL:4052055""]" below_top_5 70 42 70 [] "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", 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[""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", 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""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:P13591"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}]}], ""rank"": 54, ""rank_best"": 30, ""rank_worst"": 54}]" +provisional/SOULCAP:SC000059/Exact provisional SOULCAP:SC000059 Exact "[""CL:0000814""]" invalid_profile [] invalid expression in Required phenotypic markers: mixed '|' and space in a group [] [] +provisional/SOULCAP:SC000060/Exact provisional SOULCAP:SC000060 Exact "[""CL:0000789""]" target_not_in_index "[""CL:0000789""]" "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000002980"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001013"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": 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axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": 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""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001935"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}]}]" [] +provisional/SOULCAP:SC000061/Exact provisional SOULCAP:SC000061 Exact "[""CL:0000798""]" target_not_in_index "[""CL:0000798""]" "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000002980"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001013"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001012"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11B"", ""tokens"": [""CD11B""]}]}]}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""True"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000002065"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}, {""sense"": ""high"", ""pr"": ""PR:000007431"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000007431"", ""tokens"": [""FCER1A""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001865"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD123"", ""tokens"": [""CD123""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001865"", ""tokens"": [""CD123""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001255"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD193"", ""tokens"": [""CD193""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001255"", ""tokens"": [""CD193""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000006169"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD200"", ""tokens"": [""CD200""]}, {""via"": ""exact_alias"", ""source_token"": ""CD200RLB"", ""tokens"": [""CD200RLB""]}]}]}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001935"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}]}]" [] +provisional/SOULCAP:SC000062/Broad provisional SOULCAP:SC000062 Broad "[""CL:0000624""]" below_top_5 9 6 36 [] "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000001318"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD62"", ""tokens"": [""CD62""]}, {""via"": ""exact_alias"", ""source_token"": ""CD62L"", ""tokens"": [""CD62L""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001307"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD44"", ""tokens"": [""CD44""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW44"", ""tokens"": [""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": [""CD45RA""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001203"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD197"", ""tokens"": [""CD197""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW197"", ""tokens"": [""CDW197""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001869"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD127"", ""tokens"": [""CD127""]}, {""via"": ""exact_alias"", ""source_token"": ""CDW127"", ""tokens"": [""CDW127""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001869"", ""tokens"": [""CD127""]}]}]}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", 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""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000003466"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000003499"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", 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provisional SOULCAP:SC000064 Broad "[""CL:0000789""]" target_not_in_index "[""CL:0000789""]" "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000001932"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD24"", ""tokens"": [""CD24""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001932"", ""tokens"": [""CD24""]}]}, {""sense"": ""low"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", 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[""CD8A""]}]}]}]" [] +provisional/SOULCAP:SC000065/Broad provisional SOULCAP:SC000065 Broad "[""CL:0000084""]" target_not_in_index "[""CL:0000084""]" "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": 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""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}]}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", 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""CD69"", ""tokens"": [""CD69""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}]}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}]}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}]}]" [] +provisional/SOULCAP:SC000066/Exact provisional SOULCAP:SC000066 Exact "[""CL:0000624""]" below_top_5 9 6 36 [] "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T 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[""CDW44""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001380"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD25"", ""tokens"": [""CD25""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001380"", ""tokens"": [""CD25""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001006"", ""asserted"": ""False"", ""paths"": [{""via"": ""pro_id"", ""pr"": ""PR:000001006"", ""tokens"": [""CD45""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001015"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD45RA"", ""tokens"": 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""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000003466"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000003499"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]}]" "[{""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}], ""rank"": 4, ""rank_best"": 4, ""rank_worst"": 27}]" +provisional/SOULCAP:SC000068/Broad provisional SOULCAP:SC000068 Broad "[""CL:0000789""]" target_not_in_index "[""CL:0000789""]" "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": 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""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""positive"", ""pr"": ""PR:000001004"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001343"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD69"", ""tokens"": [""CD69""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025402"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000025403"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}]}]}]" [] +provisional/SOULCAP:SC000069/Broad provisional SOULCAP:SC000069 Broad "[""CL:0000789""]" target_not_in_index "[""CL:0000789""]" "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}]}, {""cl_id"": ""CL:0000924"", 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""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""False"", ""paths"": []}]}]" "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001004"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD4"", ""tokens"": [""CD4""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001004"", ""tokens"": [""CD4""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001084"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD8"", ""tokens"": [""CD8""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""exact_alias"", ""source_token"": ""CD8A"", ""tokens"": [""CD8A""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001084"", ""tokens"": [""CD8""]}]}], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 6}]" +provisional/SOULCAP:SC000074/Exact provisional SOULCAP:SC000074 Exact "[""CL:0000940""]" invalid_profile "[""CL:0000940""]" invalid expression in Required phenotypic markers: mixed '|' and space in a group [] [] +provisional/SOULCAP:SC000082/Exact provisional SOULCAP:SC000082 Exact "[""CL:0000904""]" below_top_5 238 238 243 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000001013"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD11"", ""tokens"": [""CD11""]}, {""via"": ""exact_alias"", ""source_token"": ""CD11C"", ""tokens"": [""CD11C""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001013"", ""tokens"": [""CD11C""]}]}, {""sense"": 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"HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + } + ], + "target_results": [ + { + "cl_id": "CL:0000913", + "label": "effector memory CD8-positive, alpha-beta T cell", + "score": 3, + "matched": [], + "gaps": [ + "CD14-/CD33-/CD64- (no axiom on any alt.)", + "CD19-/CD20- (no axiom on any alt.)", + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 3, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [], + "rank": 239, + "rank_best": 238, + "rank_worst": 247 + } + ], + "status": "below_top_5", + "note": "" + }, + { + "case_id": "provisional/SOULCAP:SC000103/Exact", + "cohort": "provisional", + "subject_id": "SOULCAP:SC000103", + "match_type": "Exact", + "targets": [ + "CL:4030002" + ], + "evidence_reference": "mappings/curated_mappings.tsv", + "uncertain": false, + "rank": null, + "rank_best": null, + "rank_worst": null, + "missing_targets": [ + "CL:4030002" + ], + "candidates": [ + { + "cl_id": "CL:0001057", + "label": "myeloid dendritic cell, human", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0002000", + "label": "Kit-positive erythroid progenitor cell", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0000938", + "label": "CD16-negative, CD56-bright natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0001024", + "label": "CD34-positive, CD38-negative hematopoietic stem cell", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0002343", + "label": "decidual natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + } + ], + "target_results": [], + "status": "target_not_in_index", + "note": "" + } + ], + "metrics": { + "reviewed": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional": { + "cases": 80, + "mrr": 0.1524095320342756, + "statuses": { + "below_top_5": 42, + "hit_at_5": 19, + "invalid_profile": 6, + "target_not_in_index": 13 + }, + "cases_with_missing_targets": 15, + "top1_disqualified": 0, + "hit_at_1": 0.0875, + "hit_at_1_optimistic": 0.125, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.15, + "hit_at_3_optimistic": 0.2, + "hit_at_3_pessimistic": 0.0875, + "hit_at_5": 0.2375, + "hit_at_5_optimistic": 0.275, + "hit_at_5_pessimistic": 0.1 + } + }, + "by_relation": { + "reviewed/Exact": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Broad": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Exact": { + "cases": 50, + "mrr": 0.15217520145714408, + "statuses": { + "below_top_5": 26, + "hit_at_5": 12, + "invalid_profile": 6, + "target_not_in_index": 6 + }, + "cases_with_missing_targets": 8, + "top1_disqualified": 0, + "hit_at_1": 0.08, + "hit_at_1_optimistic": 0.14, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.16, + "hit_at_3_optimistic": 0.18, + "hit_at_3_pessimistic": 0.08, + "hit_at_5": 0.24, + "hit_at_5_optimistic": 0.24, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Broad": { + "cases": 30, + "mrr": 0.1528000829961614, + "statuses": { + "hit_at_5": 7, + "below_top_5": 16, + "target_not_in_index": 7 + }, + "cases_with_missing_targets": 7, + "top1_disqualified": 0, + "hit_at_1": 0.1, + "hit_at_1_optimistic": 0.1, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.13333333333333333, + "hit_at_3_optimistic": 0.23333333333333334, + "hit_at_3_pessimistic": 0.1, + "hit_at_5": 0.23333333333333334, + "hit_at_5_optimistic": 0.3333333333333333, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + } + } +} diff --git a/reports/evaluation-legacy/matcher_evaluation.md b/reports/evaluation-legacy/matcher_evaluation.md new file mode 100644 index 0000000..5ed8fdf --- /dev/null +++ b/reports/evaluation-legacy/matcher_evaluation.md @@ -0,0 +1,195 @@ +# Matcher evaluation + +Target retrieval only; provisional agreement is not validated accuracy. +All cohort cases remain in denominators, including invalid profiles and absent targets. +Primary ranks retain production tie ordering and disqualified candidates. Bounds show tie sensitivity. + +## Metrics + +```json +{ + "reviewed": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional": { + "cases": 80, + "mrr": 0.1524095320342756, + "statuses": { + "below_top_5": 42, + "hit_at_5": 19, + "invalid_profile": 6, + "target_not_in_index": 13 + }, + "cases_with_missing_targets": 15, + "top1_disqualified": 0, + "hit_at_1": 0.0875, + "hit_at_1_optimistic": 0.125, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.15, + "hit_at_3_optimistic": 0.2, + "hit_at_3_pessimistic": 0.0875, + "hit_at_5": 0.2375, + "hit_at_5_optimistic": 0.275, + "hit_at_5_pessimistic": 0.1 + } +} +``` + +## Relation breakdown + +```json +{ + "reviewed/Exact": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Broad": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Exact": { + "cases": 50, + "mrr": 0.15217520145714408, + "statuses": { + "below_top_5": 26, + "hit_at_5": 12, + "invalid_profile": 6, + "target_not_in_index": 6 + }, + "cases_with_missing_targets": 8, + "top1_disqualified": 0, + "hit_at_1": 0.08, + "hit_at_1_optimistic": 0.14, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.16, + "hit_at_3_optimistic": 0.18, + "hit_at_3_pessimistic": 0.08, + "hit_at_5": 0.24, + "hit_at_5_optimistic": 0.24, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Broad": { + "cases": 30, + "mrr": 0.1528000829961614, + "statuses": { + "hit_at_5": 7, + "below_top_5": 16, + "target_not_in_index": 7 + }, + "cases_with_missing_targets": 7, + "top1_disqualified": 0, + "hit_at_1": 0.1, + "hit_at_1_optimistic": 0.1, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.13333333333333333, + "hit_at_3_optimistic": 0.23333333333333334, + "hit_at_3_pessimistic": 0.1, + "hit_at_5": 0.23333333333333334, + "hit_at_5_optimistic": 0.3333333333333333, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + } +} +``` + +See matcher_evaluation.tsv for per-case failures and matcher_evaluation.json for full evidence and provenance. diff --git a/reports/evaluation-legacy/matcher_evaluation.tsv b/reports/evaluation-legacy/matcher_evaluation.tsv new file mode 100644 index 0000000..e878348 --- /dev/null +++ b/reports/evaluation-legacy/matcher_evaluation.tsv @@ -0,0 +1,81 @@ +case_id cohort subject_id match_type targets status rank rank_best rank_worst missing_targets note candidates target_results +provisional/SOULCAP:SC000001/Exact provisional SOULCAP:SC000001 Exact "[""CL:0000623""]" below_top_5 6 6 32 [] "[{""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (hi) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (hi) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+/CD56:high (no axiom on any alt.)"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 6, ""rank_best"": 6, ""rank_worst"": 32}]" +provisional/SOULCAP:SC000002/Exact provisional SOULCAP:SC000002 Exact "[""CL:0000938""]" hit_at_5 1 1 2 [] "[{""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56:high (hi)"", ""CD16- (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56:high (hi)"", ""CD16- (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD56:high"", ""CD127-"", ""CD16-/CD16:low (no axiom on any alt.)"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56:high"", ""CD127-"", ""CD16-/CD16:low (no axiom on any alt.)"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000823"", ""label"": ""immature natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56:high"", ""CD127-"", ""CD16-/CD16:low (no axiom on any alt.)"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56:high (hi)"", ""CD16- (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000003/Exact provisional SOULCAP:SC000003 Exact "[""CL:0000939""]" hit_at_5 1 1 2 [] "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD45+"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+/CD56:high (no axiom on any alt.)"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000823"", ""label"": ""immature natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+/CD56:high (no axiom on any alt.)"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000004/Broad provisional SOULCAP:SC000004 Broad "[""CL:0000939""]" hit_at_5 1 1 2 [] "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD45+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002346"", ""label"": ""Dx5-negative, NK1.1-positive immature natural killer cell, mouse"", ""score"": 16, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002438"", ""label"": ""NK1.1-positive natural killer cell, mouse"", ""score"": 16, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000005/Broad provisional SOULCAP:SC000005 Broad "[""CL:0000939""]" hit_at_5 1 1 2 [] "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD45+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000823"", ""label"": ""immature natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000006/Broad provisional SOULCAP:SC000006 Broad "[""CL:0001074""]" hit_at_5 3 3 3 [] "[{""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 15, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001076"", ""label"": ""NKp46-positive innate lymphoid cell, human"", ""score"": 15, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001074"", ""label"": ""CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human"", ""score"": 14, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 13, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001072"", ""label"": ""CD34-negative, CD117-positive innate lymphoid cell, human"", ""score"": 11, ""matched"": [""CD3-"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD56+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001074"", ""label"": ""CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human"", ""score"": 14, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 3, ""rank_best"": 3, ""rank_worst"": 3}]" +provisional/SOULCAP:SC000007/Exact provisional SOULCAP:SC000007 Exact "[""CL:0001065""]" below_top_5 155 155 159 [] "[{""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 23, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 23, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 23, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD123-""], ""gaps"": [""CD45+"", ""CD127+"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002089"", ""label"": ""group 2 innate lymphoid cell, mouse"", ""score"": 23, ""matched"": [""CD33- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD127+""], ""gaps"": [""CD34-"", ""CD45+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001065"", ""label"": ""innate lymphoid cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD19-"", ""CD3-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD127+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 155, ""rank_best"": 155, ""rank_worst"": 159}]" +provisional/SOULCAP:SC000008/Exact provisional SOULCAP:SC000008 Exact "[""CL:0001067""]" below_top_5 161 150 165 [] "[{""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117-"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117-"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117-"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 27, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD56-"", ""CD123-""], ""gaps"": [""CD45+"", ""CD127+"", ""CD117-"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002089"", ""label"": ""group 2 innate lymphoid cell, mouse"", ""score"": 27, ""matched"": [""CD33- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD127+"", ""CD56-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD117-"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001067"", ""label"": ""group 1 innate lymphoid cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD19-"", ""CD3-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD127+"", ""CD56-"", ""CD117-"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 161, ""rank_best"": 150, ""rank_worst"": 165}]" +provisional/SOULCAP:SC000009/Exact provisional SOULCAP:SC000009 Exact "[""CL:0001081""]" below_top_5 26 25 32 [] "[{""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 29, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD117:low (dim) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD127+"", ""CD294+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 27, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD56-"", ""CD123-""], ""gaps"": [""CD45+"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001081"", ""label"": ""group 2 innate lymphoid cell, human"", ""score"": 23, ""matched"": [""CD3-"", ""CD19-"", ""CD3-"", ""CD127+"", ""CD294+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD56-"", ""CD117:low/CD117- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 26, ""rank_best"": 25, ""rank_worst"": 32}]" +provisional/SOULCAP:SC000010/Exact provisional SOULCAP:SC000010 Exact "[""CL:0001078""]" below_top_5 118 118 120 [] "[{""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 29, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD117+ (dim)""], ""gaps"": [""CD34-"", ""CD127+"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002344"", ""label"": ""CD56-negative, CD161-positive immature natural killer cell, human"", ""score"": 29, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117+"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117+"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117+"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001078"", ""label"": ""group 3 innate lymphoid cell, human"", ""score"": 19, ""matched"": [""CD3-"", ""CD19-"", ""CD3-"", ""CD127+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD56:low/CD56- (no axiom on any alt.)"", ""CD117+"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 118, ""rank_best"": 118, ""rank_worst"": 120}]" +provisional/SOULCAP:SC000011/Exact provisional SOULCAP:SC000011 Exact "[""CL:0000990""]" below_top_5 18 15 21 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 21, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD3-"", ""CD19-"", ""CD56-"", ""CD127-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""CD11C:high"", ""HLA-DR+""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000782"", ""label"": ""myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002399"", ""label"": ""CD1c-positive myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000990"", ""label"": ""conventional dendritic cell"", ""score"": 13, ""matched"": [""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD123:not:high/CD193- (no axiom on any alt.)"", ""CD123:not:high/CD303- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 18, ""rank_best"": 15, ""rank_worst"": 21}]" +provisional/SOULCAP:SC000012/Exact provisional SOULCAP:SC000012 Exact "[""CL:0002394""]" hit_at_5 2 1 2 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD141+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 21, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD3-"", ""CD19-"", ""CD56-"", ""CD127-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""CD11C:high"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000782"", ""label"": ""myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0011031"", ""label"": ""monocyte-derived dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD141+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 2, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000013/Exact provisional SOULCAP:SC000013 Exact "[""CL:0002399""]" hit_at_5 2 1 2 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002399"", ""label"": ""CD1c-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD1C+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 21, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD3-"", ""CD19-"", ""CD56-"", ""CD127-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""CD11C:high"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000782"", ""label"": ""myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0002399"", ""label"": ""CD1c-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD1C+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 2, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000014/Exact provisional SOULCAP:SC000014 Exact "[""CL:0001058""]" below_top_5 34 27 42 [] "[{""cl_id"": ""CL:0000991"", ""label"": ""CD11c-negative plasmacytoid dendritic cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD303+ (1 of 3 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000994"", ""label"": ""immature CD11c-negative plasmacytoid dendritic cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD303+ (1 of 3 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000996"", ""label"": ""mature CD11c-negative plasmacytoid dendritic cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD303+ (1 of 3 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002008"", ""label"": ""CD34-positive, CD38-positive eosinophil progenitor cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD193-/FCER1A-/CD303+ (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD193-/FCER1A-/CD303+ (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001058"", ""label"": ""plasmacytoid dendritic cell, human"", ""score"": 12, ""matched"": [""CD3-"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD45+"", ""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD193-/FCER1A-/CD303+ (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 27, ""rank_worst"": 42}]" +provisional/SOULCAP:SC000015/Exact provisional SOULCAP:SC000015 Exact "[""CL:0000043""]" hit_at_5 3 3 7 [] "[{""cl_id"": ""CL:0000614"", ""label"": ""basophilic myelocyte"", ""score"": 18, ""matched"": [""CD3-"", ""CD33+ (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-"", ""CD16-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD14-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [""CD15-/CD66B- (all alt. conflict)""], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002008"", ""label"": ""CD34-positive, CD38-positive eosinophil progenitor cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD123+ (1 of 2 alt.)"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD193+/FCER1A+/HLA-DR-/CD303- (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD123+ (hi) (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000612"", ""label"": ""eosinophilic myelocyte"", ""score"": 17, ""matched"": [""CD3-"", ""CD33+ (1 of 2 alt.)"", ""CD193+ (1 of 4 alt.)"", ""CD56-"", ""CD19-"", ""CD16-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD14-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [""CD15-/CD66B- (all alt. conflict)""], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000767"", ""label"": ""basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD123+ (hi) (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD123+ (hi) (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 3, ""rank_best"": 3, ""rank_worst"": 7}]" +provisional/SOULCAP:SC000016/Exact provisional SOULCAP:SC000016 Exact "[""CL:0000043""]" hit_at_5 1 1 4 [] "[{""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000767"", ""label"": ""basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000768"", ""label"": ""immature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000770"", ""label"": ""band form basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000942"", ""label"": ""thymic plasmacytoid dendritic cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD45+"", ""CD123+"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD193+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 4}]" +provisional/SOULCAP:SC000017/Exact provisional SOULCAP:SC000017 Exact "[""CL:0000576""]" invalid_profile "[""CL:0000576""]" invalid expression in Required exclusion: unexpected ')' in group [] [] +provisional/SOULCAP:SC000018/Exact provisional SOULCAP:SC000018 Exact "[""CL:0000860""]" invalid_profile [] invalid expression in Required exclusion: unexpected ')' in group [] [] +provisional/SOULCAP:SC000019/Exact provisional SOULCAP:SC000019 Exact "[""CL:0000875""]" invalid_profile [] invalid expression in Required exclusion: unexpected ')' in group [] [] +provisional/SOULCAP:SC000020/Exact provisional SOULCAP:SC000020 Exact "[""CL:0002393""]" invalid_profile [] invalid expression in Required exclusion: unexpected ')' in group [] [] +provisional/SOULCAP:SC000021/Exact provisional SOULCAP:SC000021 Exact "[""CL:0000775""]" below_top_5 9 7 16 [] "[{""cl_id"": ""CL:0000582"", ""label"": ""neutrophilic metamyelocyte"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD19-"", ""CD33+ (1 of 2 alt.)""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001021"", ""label"": ""CD34-positive, CD38-positive common lymphoid progenitor"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD45+"", ""CD19-""], ""gaps"": [""CD123-"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD123-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD123-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD45+"", ""CD19-""], ""gaps"": [""CD123-"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000775"", ""label"": ""neutrophil"", ""score"": 16, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 9, ""rank_best"": 7, ""rank_worst"": 16}]" +provisional/SOULCAP:SC000022/Exact provisional SOULCAP:SC000022 Exact "[""CL:0000771""]" hit_at_5 4 2 7 [] "[{""cl_id"": ""CL:0000612"", ""label"": ""eosinophilic myelocyte"", ""score"": 26, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD16-"", ""CD19-"", ""CD33+ (1 of 2 alt.)""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000041"", ""label"": ""mature eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000580"", ""label"": ""neutrophilic myelocyte"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD16-"", ""CD19-"", ""CD33+ (1 of 2 alt.)""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD193+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000771"", ""label"": ""eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000772"", ""label"": ""immature eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000771"", ""label"": ""eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 2, ""rank_worst"": 7}]" +provisional/SOULCAP:SC000023/Exact provisional SOULCAP:SC000023 Exact "[""CL:0000236""]" target_not_in_index "[""CL:0000236""]" "[{""cl_id"": ""CL:0000819"", ""label"": ""B-1 B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000820"", ""label"": ""B-1a B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000821"", ""label"": ""B-1b B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000843"", ""label"": ""follicular B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000024/Exact provisional SOULCAP:SC000024 Exact "[""CL:0000946""]" target_not_in_index "[""CL:0000946""]" "[{""cl_id"": ""CL:0000949"", ""label"": ""IgD plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000950"", ""label"": ""IgE plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000980"", ""label"": ""plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000982"", ""label"": ""IgG plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000983"", ""label"": ""IgM plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000025/Exact provisional SOULCAP:SC000025 Exact "[""CL:0000980""]" hit_at_5 3 1 7 [] "[{""cl_id"": ""CL:0000949"", ""label"": ""IgD plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000950"", ""label"": ""IgE plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000980"", ""label"": ""plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000982"", ""label"": ""IgG plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000983"", ""label"": ""IgM plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000980"", ""label"": ""plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 3, ""rank_best"": 1, ""rank_worst"": 7}]" +provisional/SOULCAP:SC000026/Exact provisional SOULCAP:SC000026 Exact "[""CL:0000786""]" below_top_5 31 31 53 [] "[{""cl_id"": ""CL:0002047"", ""label"": ""fraction B precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002049"", ""label"": ""fraction C precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002050"", ""label"": ""fraction C' precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002051"", ""label"": ""CD38-high pre-BCR positive cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD19+"", ""CD38:high (hi)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002052"", ""label"": ""fraction D precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 8, ""matched"": [""CD138+"", ""CD20-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD3-"", ""CD56-"", ""CD45+"", ""CD19+"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 31, ""rank_best"": 31, ""rank_worst"": 53}]" +provisional/SOULCAP:SC000028/Broad provisional SOULCAP:SC000028 Broad "[""CL:0000818""]" hit_at_5 1 1 6 [] "[{""cl_id"": ""CL:0000818"", ""label"": ""transitional stage B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000958"", ""label"": ""T1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000959"", ""label"": ""T2 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000960"", ""label"": ""T3 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:high/CD10:high (no axiom on any alt.)"", ""CD24:high"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000818"", ""label"": ""transitional stage B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 6}]" +provisional/SOULCAP:SC000029/Exact provisional SOULCAP:SC000029 Exact "[""CL:0000785""]" below_top_5 43 43 45 [] "[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002055"", ""label"": ""CD38-negative immature B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000785"", ""label"": ""mature B cell"", ""score"": 10, ""matched"": [""CD3-"", ""CD19+ (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20+""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 43, ""rank_best"": 43, ""rank_worst"": 45}]" +provisional/SOULCAP:SC000030/Exact provisional SOULCAP:SC000030 Exact "[""CL:0000960""]" below_top_5 20 13 26 [] "[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10:low (no axiom on any alt.)"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10:low (no axiom on any alt.)"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002054"", ""label"": ""fraction E immature B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+"", ""CD127-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low/CD38-/CD10:low (no axiom on any alt.)"", ""IGD+"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000960"", ""label"": ""T3 B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10:low (no axiom on any alt.)"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 20, ""rank_best"": 13, ""rank_worst"": 26}]" +provisional/SOULCAP:SC000031/Exact provisional SOULCAP:SC000031 Exact "[""CL:0000788""]" hit_at_5 5 5 8 [] "[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000788"", ""label"": ""naive B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000788"", ""label"": ""naive B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 5, ""rank_best"": 5, ""rank_worst"": 8}]" +provisional/SOULCAP:SC000032/Exact provisional SOULCAP:SC000032 Exact "[""CL:0000981""]" hit_at_5 5 5 8 [] "[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 5, ""rank_best"": 5, ""rank_worst"": 8}]" +provisional/SOULCAP:SC000033/Broad provisional SOULCAP:SC000033 Broad "[""CL:0000981""]" below_top_5 12 12 19 [] "[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 23, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002055"", ""label"": ""CD38-negative immature B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+ (dim)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000843"", ""label"": ""follicular B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000959"", ""label"": ""T2 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 12, ""rank_best"": 12, ""rank_worst"": 19}]" +provisional/SOULCAP:SC000034/Broad provisional SOULCAP:SC000034 Broad "[""CL:0000981""]" hit_at_5 4 4 6 [] "[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002103"", ""label"": ""IgG-positive double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 4, ""rank_worst"": 6}]" +provisional/SOULCAP:SC000035/Broad provisional SOULCAP:SC000035 Broad "[""CL:0000981""]" hit_at_5 5 5 12 [] "[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000958"", ""label"": ""T1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD21-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)"", ""IGD-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 5, ""rank_best"": 5, ""rank_worst"": 12}]" +provisional/SOULCAP:SC000036/Broad provisional SOULCAP:SC000036 Broad "[""CL:0000981""]" below_top_5 12 12 19 [] "[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 23, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002055"", ""label"": ""CD38-negative immature B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+ (dim)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000843"", ""label"": ""follicular B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000959"", ""label"": ""T2 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 12, ""rank_best"": 12, ""rank_worst"": 19}]" +provisional/SOULCAP:SC000037/Exact provisional SOULCAP:SC000037 Exact "[""CL:0000787""]" below_top_5 39 39 42 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002108"", ""label"": ""CD38-negative IgG memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000787"", ""label"": ""memory B cell"", ""score"": 12, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 39, ""rank_best"": 39, ""rank_worst"": 42}]" +provisional/SOULCAP:SC000039/Exact provisional SOULCAP:SC000039 Exact "[""CL:0000970""]" below_top_5 13 13 14 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002116"", ""label"": ""B220-low CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000970"", ""label"": ""unswitched memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 13, ""rank_best"": 13, ""rank_worst"": 14}]" +provisional/SOULCAP:SC000040/Exact provisional SOULCAP:SC000040 Exact "[""CL:0000971""]" below_top_5 33 33 39 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002108"", ""label"": ""CD38-negative IgG memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000971"", ""label"": ""IgM memory B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 33, ""rank_best"": 33, ""rank_worst"": 39}]" +provisional/SOULCAP:SC000041/Exact provisional SOULCAP:SC000041 Exact "[""CL:0000972""]" below_top_5 14 13 18 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002116"", ""label"": ""B220-low CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000972"", ""label"": ""class switched memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 14, ""rank_best"": 13, ""rank_worst"": 18}]" +provisional/SOULCAP:SC000042/Exact provisional SOULCAP:SC000042 Exact "[""CL:0000973""]" below_top_5 18 17 19 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002118"", ""label"": ""CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002120"", ""label"": ""CD24-positive CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002121"", ""label"": ""CD24-negative CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000973"", ""label"": ""IgA memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 18, ""rank_best"": 17, ""rank_worst"": 19}]" +provisional/SOULCAP:SC000043/Exact provisional SOULCAP:SC000043 Exact "[""CL:0000979""]" below_top_5 18 17 22 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002118"", ""label"": ""CD38-negative IgG-negative class switched memory B cell"", ""score"": 22, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002120"", ""label"": ""CD24-positive CD38-negative IgG-negative class switched memory B cell"", ""score"": 22, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002121"", ""label"": ""CD24-negative CD38-negative IgG-negative class switched memory B cell"", ""score"": 22, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000979"", ""label"": ""IgG memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 18, ""rank_best"": 17, ""rank_worst"": 22}]" +provisional/SOULCAP:SC000044/Exact provisional SOULCAP:SC000044 Exact "[""CL:0000948""]" below_top_5 17 17 19 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002118"", ""label"": ""CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002120"", ""label"": ""CD24-positive CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002121"", ""label"": ""CD24-negative CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000948"", ""label"": ""IgE memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 17, ""rank_best"": 17, ""rank_worst"": 19}]" +provisional/SOULCAP:SC000045/Exact provisional SOULCAP:SC000045 Exact "[""CL:0000084""]" target_not_in_index "[""CL:0000084""]" "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000046/Broad provisional SOULCAP:SC000046 Broad "[""CL:4052055""]" below_top_5 34 2 34 [] "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 2, ""rank_worst"": 34}]" +provisional/SOULCAP:SC000047/Broad provisional SOULCAP:SC000047 Broad "[""CL:4052055""]" below_top_5 42 13 42 [] "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002430"", ""label"": ""CD4-intermediate, CD8-positive double-positive thymocyte"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002431"", ""label"": ""CD4-positive, CD8-intermediate double-positive thymocyte"", ""score"": 9, ""matched"": [""CD4+"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD4+"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 42, ""rank_best"": 13, ""rank_worst"": 42}]" +provisional/SOULCAP:SC000048/Broad provisional SOULCAP:SC000048 Broad "[""CL:4052055""]" below_top_5 63 39 63 [] "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 14, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 14, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 14, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD4-"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 63, ""rank_best"": 39, ""rank_worst"": 63}]" +provisional/SOULCAP:SC000049/Broad provisional SOULCAP:SC000049 Broad "[""CL:4052055""]" below_top_5 34 2 34 [] "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 2, ""rank_worst"": 34}]" +provisional/SOULCAP:SC000050/Broad provisional SOULCAP:SC000050 Broad "[""CL:4052055""]" below_top_5 70 42 70 [] "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4+"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 70, ""rank_best"": 42, ""rank_worst"": 70}]" +provisional/SOULCAP:SC000051/Broad provisional SOULCAP:SC000051 Broad "[""CL:4052055""]" below_top_5 63 34 63 [] "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4-"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 63, ""rank_best"": 34, ""rank_worst"": 63}]" +provisional/SOULCAP:SC000052/Broad provisional SOULCAP:SC000052 Broad "[""CL:4052055""]" below_top_5 42 9 42 [] "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4+"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 42, ""rank_best"": 9, ""rank_worst"": 42}]" +provisional/SOULCAP:SC000053/Broad provisional SOULCAP:SC000053 Broad "[""CL:4052055""]" below_top_5 54 30 54 [] "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4-"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 54, ""rank_best"": 30, ""rank_worst"": 54}]" +provisional/SOULCAP:SC000054/Broad provisional SOULCAP:SC000054 Broad "[""CL:4052055""]" below_top_5 34 2 34 [] "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 2, ""rank_worst"": 34}]" +provisional/SOULCAP:SC000055/Broad provisional SOULCAP:SC000055 Broad "[""CL:4052055""]" below_top_5 70 42 70 [] "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4+"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 70, ""rank_best"": 42, ""rank_worst"": 70}]" +provisional/SOULCAP:SC000056/Broad provisional SOULCAP:SC000056 Broad "[""CL:4052055""]" below_top_5 63 34 63 [] "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4-"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 63, ""rank_best"": 34, ""rank_worst"": 63}]" +provisional/SOULCAP:SC000057/Broad provisional SOULCAP:SC000057 Broad "[""CL:4052055""]" below_top_5 42 9 42 [] "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4+"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 42, ""rank_best"": 9, ""rank_worst"": 42}]" +provisional/SOULCAP:SC000058/Broad provisional SOULCAP:SC000058 Broad "[""CL:4052055""]" below_top_5 54 30 54 [] "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4-"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 54, ""rank_best"": 30, ""rank_worst"": 54}]" +provisional/SOULCAP:SC000059/Exact provisional SOULCAP:SC000059 Exact "[""CL:0000814""]" invalid_profile [] invalid expression in Required phenotypic markers: mixed '|' and space in a group [] [] +provisional/SOULCAP:SC000060/Exact provisional SOULCAP:SC000060 Exact "[""CL:0000789""]" target_not_in_index "[""CL:0000789""]" "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000061/Exact provisional SOULCAP:SC000061 Exact "[""CL:0000798""]" target_not_in_index "[""CL:0000798""]" "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000062/Broad provisional SOULCAP:SC000062 Broad "[""CL:0000624""]" below_top_5 9 6 36 [] "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000624"", ""label"": ""CD4-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 9, ""rank_best"": 6, ""rank_worst"": 36}]" +provisional/SOULCAP:SC000063/Broad provisional SOULCAP:SC000063 Broad "[""CL:0000625""]" hit_at_5 4 4 27 [] "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 4, ""rank_worst"": 27}]" +provisional/SOULCAP:SC000064/Broad provisional SOULCAP:SC000064 Broad "[""CL:0000789""]" target_not_in_index "[""CL:0000789""]" "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000065/Broad provisional SOULCAP:SC000065 Broad "[""CL:0000084""]" target_not_in_index "[""CL:0000084""]" "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000066/Exact provisional SOULCAP:SC000066 Exact "[""CL:0000624""]" below_top_5 9 6 36 [] "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000624"", ""label"": ""CD4-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 9, ""rank_best"": 6, ""rank_worst"": 36}]" +provisional/SOULCAP:SC000067/Exact provisional SOULCAP:SC000067 Exact "[""CL:0000625""]" hit_at_5 4 4 27 [] "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 4, ""rank_worst"": 27}]" +provisional/SOULCAP:SC000068/Broad provisional SOULCAP:SC000068 Broad "[""CL:0000789""]" target_not_in_index "[""CL:0000789""]" "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000069/Broad provisional SOULCAP:SC000069 Broad "[""CL:0000789""]" target_not_in_index "[""CL:0000789""]" "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000070/Broad provisional SOULCAP:SC000070 Broad "[""CL:0000798""]" target_not_in_index "[""CL:0000798""]" "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000071/Broad provisional SOULCAP:SC000071 Broad "[""CL:0000798""]" target_not_in_index "[""CL:0000798""]" "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000072/Broad provisional SOULCAP:SC000072 Broad "[""CL:0000798""]" target_not_in_index "[""CL:0000798""]" "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000073/Exact provisional SOULCAP:SC000073 Exact "[""CL:0000803""]" hit_at_5 1 1 6 [] "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 6}]" +provisional/SOULCAP:SC000074/Exact provisional SOULCAP:SC000074 Exact "[""CL:0000940""]" invalid_profile "[""CL:0000940""]" invalid expression in Required phenotypic markers: mixed '|' and space in a group [] [] +provisional/SOULCAP:SC000082/Exact provisional SOULCAP:SC000082 Exact "[""CL:0000904""]" below_top_5 238 238 243 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000904"", ""label"": ""central memory CD4-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 238, ""rank_best"": 238, ""rank_worst"": 243}]" +provisional/SOULCAP:SC000085/Exact provisional SOULCAP:SC000085 Exact "[""CL:0000907""]" below_top_5 239 238 243 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000907"", ""label"": ""central memory CD8-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 239, ""rank_best"": 238, ""rank_worst"": 243}]" +provisional/SOULCAP:SC000087/Exact provisional SOULCAP:SC000087 Exact "[""CL:0000898""]" below_top_5 252 243 261 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000898"", ""label"": ""naive T cell"", ""score"": 2, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 252, ""rank_best"": 243, ""rank_worst"": 261}]" +provisional/SOULCAP:SC000089/Exact provisional SOULCAP:SC000089 Exact "[""CL:0000895""]" below_top_5 238 238 242 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 238, ""rank_best"": 238, ""rank_worst"": 242}]" +provisional/SOULCAP:SC000092/Exact provisional SOULCAP:SC000092 Exact "[""CL:0000900""]" below_top_5 253 242 258 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 2, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 253, ""rank_best"": 242, ""rank_worst"": 258}]" +provisional/SOULCAP:SC000096/Exact provisional SOULCAP:SC000096 Exact "[""CL:0000905""]" below_top_5 238 238 247 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 12, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000905"", ""label"": ""effector memory CD4-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 238, ""rank_best"": 238, ""rank_worst"": 247}]" +provisional/SOULCAP:SC000099/Exact provisional SOULCAP:SC000099 Exact "[""CL:0000913""]" below_top_5 239 238 247 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 12, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000913"", ""label"": ""effector memory CD8-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 239, ""rank_best"": 238, ""rank_worst"": 247}]" +provisional/SOULCAP:SC000103/Exact provisional SOULCAP:SC000103 Exact "[""CL:4030002""]" target_not_in_index "[""CL:4030002""]" "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] diff --git a/reports/fall_2026_sprint_backlog.md b/reports/fall_2026_sprint_backlog.md new file mode 100644 index 0000000..845f806 --- /dev/null +++ b/reports/fall_2026_sprint_backlog.md @@ -0,0 +1,381 @@ +# Fall 2026 sprint backlog + +Sprint-level breakdown of the Fall 2026 (Oct–Dec) working plan prepared for +Dr. Alexander Diehl, baselined 2026-09-18. Every item from that plan is +expanded into concrete sub-tasks with acceptance criteria, grounded in +[ROADMAP.md](../ROADMAP.md), [gaps.tsv](gaps.tsv), and issues #5, #6, #7, +#12, #13, #14 as they stood on that date. **No scope beyond those sources** — +this is a task breakdown of already-agreed work, not a new plan. An +interactive version of this backlog also exists as a published Claude +artifact; this file is the git-tracked source of record. + +Status legend used throughout: **Blocked · external** (the next move belongs +to Dr. Diehl, the Google Sheet admin, or David Osumi-Sutherland/Kelly — +people this repo can request from but not act for) · **Both** (a human +decision gates one step, but repo work can still prep or follow up) · +**Independent** (student-executable today). + +At a glance: 17 plan items → 57 sub-tasks · 5 blocked on someone outside the +repo · 3 split (both) · 9 independently actionable. + +--- + +## October — unblock and clear the backlog + +Six items. Before any new mapping work, get the two external blockers moving +and clear housekeeping that's been sitting since summer. + +### O1. Request the Sheet's broad/exact-match + comment columns — **Blocked · external** + +The single highest-leverage ask this semester: Milestone 3 has been ⛔ +blocked since July on the Sheet gaining a dedicated broad-vs-exact CL match +field and a comment column. `Type of Match` already exists but is an +assay-type field, not this. + +1. Draft the column spec — field names, allowed values for broad/exact, and + what the comment column is for — citing ROADMAP.md's Milestone 3 blocker + note directly so the ask is unambiguous. +2. Send the request to Dr. Diehl and/or whoever actually administers the + master Sheet (confirm who that is if unclear — Diehl may not hold edit + rights himself). +3. Once told it's done, re-run `uv run soulcap-sync` and diff the new column + headers against the current three (`Type of Match`, `OLS CL identifier`, + `CL Mapping Notes`) to confirm the addition landed as specified. + +**Acceptance criteria:** the freshly-synced sheet has two new columns beyond +the existing three, with values matching the drafted spec; roadmap-status-sync +can then move Milestone 3 off ⛔. + +**Skill/CLI:** `uv run soulcap-sync` to verify; `roadmap-status-sync` to +update M3 status afterward. No automatable ask step. + +### O2. File the 15 backlog gaps as GitHub issues — **Independent** + +`reports/gaps.tsv` currently has 15 rows at `status=open` against 2 already +`filed_as_issue` (ILC1 → #14, the monocyte CD14/16 subset gap → #12). Run the +`gap-issue-filing` skill end to end. + +1. List all 15 `open` rows (NK CD56 axiom gap, NK1/NK3 substate gap, + Transitional B cell empty markers, CTNK/pDC sheet typos, monocyte axiom + gap + exclusion-string bug, B cell axiom gap, BDN1–4 gap, IgD-only gap, + the 9-row CD4/CD8 lineage gap, the 13-row CD56+ T cell family gap, the + ~13-row Tcm/Tem/Temra gap, the CD8+ Temra asymmetry, and the 26-row + no-Full-Name sheet bug). +2. Search `gh issue list --search " in:title" --state all` and + `--label gap` for each — the skill's own README flags that some + axiom-gap rows already reference #12 in their description without being + labelled `gap`, so read before assuming a row is unfiled. +3. List the confirmed filing batch (abbreviation + one-line description) and + get explicit sign-off before running `gh issue create` — this creates + public, visible state. +4. File each confirmed row from the `mapping_gap` template fields, labelled + `gap`. +5. Immediately after each successful create, edit that row's `status` → + `filed_as_issue` and `repo_issue` → the returned URL, so a mid-batch + failure never leaves a filed issue unrecorded. + +**Acceptance criteria:** no `gaps.tsv` row stays `open` without a documented +reason (e.g. a duplicate of an existing issue); every newly filed row carries +a real issue URL; zero duplicate issues created. + +**Skill/CLI:** `gap-issue-filing`. + +### O3. Close out quick-turnaround issues — #7 and #6 — **Independent** + +#7 (licensing) has sat untouched since June; #6 (basic lexical mapping) may +already be satisfied by tooling that's since shipped. + +**#7 licensing:** + +1. Confirm the copyright holder wording — the issue itself marks "(c) + SOULCAP Foundation" with a "(check)" flag — before committing it verbatim. +2. Add a `LICENSE` (Apache 2.0) for code and a `LICENSE-DATA` or equivalent + (CC-BY 4.0) for data artifacts, following the mechanism the issue links to. +3. Add a short licensing section to README.md pointing at both files. +4. Close #7. + +**#6 lexical mapping:** + +1. Re-read #6's two checklist items: whether OLS4-lexical mapping alone is + sufficient, and whether a programmatic top-3-candidates TSV exists and can + run batched via an agent. +2. Check `reports/candidate_cl_mappings_batch.tsv` and `_agreement.tsv` — + both already generated by `soulcap-match --batch [--lexical]` — against + those two boxes. +3. Comment on #6 stating which boxes are satisfied by current tooling and + close it, or narrow it to whatever genuinely remains (e.g. batching + quality, not existence). + +**Acceptance criteria:** #7 closed with both license files committed and +referenced from README.md. #6 either closed with a comment mapping its +checklist to `soulcap-match --batch`'s existing output, or re-scoped to a +specific remaining gap. + +**Skill/CLI:** `soulcap-match --batch --lexical`. Licensing itself is manual. + +### O4. Nudge the stalled marker-naming review — #5 — **Blocked · external** + +`reports/proposed_marker_fixes.xlsx` (25 rows — compact TCR/tetramer names, +`/`-separated alias pairs like `CD183/CXCR3`, the monocyte exclusion-string +bug) went to David Osumi-Sutherland / Kelly on 2026-07-21. No reply since. + +1. Draft a short, specific follow-up referencing the exact file and date + already sent — don't re-derive or re-attach a new proposal. +2. Post it as a comment on #5 and/or a direct message, whichever channel the + original went through. +3. If no response after a reasonable window, escalate through Dr. Diehl + rather than re-sending cold. + +**Acceptance criteria:** #5 has a dated follow-up newer than 2026-07-21; +either a decision comes back or an explicit escalation path is triggered +before month-end. + +**Skill/CLI:** manual outreach only. + +### O5. Curator sign-off on the September resolver review — **Both** + +The Sept 18 regression follow-up left this explicitly as "Codex automated +evidence review; curator sign-off pending" — three flagged mappings and five +marker-representation holds, none of them a coding task. + +1. Walk a curator through the three flagged cases in + `reports/regression-followup/mapping_review.tsv`: SC000063 (CL:0000625, + Broad — lineage mismatch), SC000067 (CL:0000625, Exact — OR-gate + equivalence unconfirmed), SC000073 (CL:0000803, Exact — missing tissue + context). +2. Walk the same curator through the five withheld marker holds in + `reports/marker_resolution_audit.md`: CD3, CD8, CD15, CD16, MR1 — each + currently "unresolved / withhold" pending a call on whether registry + protein identity is established. +3. Record each decision — accepted relation, supporting sources, reviewer + identity, date — replacing the "pending" placeholder in the TSV. +4. If any decision changes matcher behavior, re-run `uv run soulcap-evaluate` + to capture the new fingerprint and metrics. + +**Acceptance criteria:** all 3 flagged cases and 5 marker holds carry a real +reviewer name, date, and rationale instead of "pending"; any resulting +matcher change is re-evaluated and the new fingerprint recorded. + +**Skill/CLI:** `uv run soulcap-evaluate` for the re-run. Sign-off itself is +human judgment. + +### O6. Reset ROADMAP.md as the semester baseline — **Independent** + +Run before tracking a semester of progress against it — not after. + +1. Run roadmap-status-sync's Step 1–2: recompute M1–M4 status from what's on + disk, diff against the current headers. +2. Confirm any judgment call (🟡 vs ✅, whether a still-blocked milestone + should read differently) with the user before writing. +3. Apply the emoji and fraction updates, and refresh the CL term corrections + table's Status column against #13/#14's current GitHub state. + +**Acceptance criteria:** every milestone heading matches freshly recomputed +evidence, each with its fraction stated inline (e.g. "8/14") so it can't +silently go stale the same way again. + +**Skill/CLI:** `roadmap-status-sync`. + +--- + +## November — the core milestone push + +Four items. With October's blockers cleared (or at least in motion), this is +the month that actually grows reviewed coverage. + +### N1. Finish Milestone 2's remaining six categories — **Blocked · external** + +Monocyte, neutrophil, basophil, mast cell, granulocyte, MDSC — Dr. Diehl's +lane per the existing division of labor. Monocyte doubles as evidence for +#12. + +1. Pull the category's SOULCAP references from the `Citation Mgr` tab, per + the Milestone 2 strategy in CLAUDE.md. +2. Traverse citations via the `citation-traversal` skill (ASTA) where + reachable, falling back to `soulcap-europepmc` when it isn't. +3. Mine the `OMIPs` tab as a secondary source when the reference set alone + comes up short. +4. Write `reports/literature/_markers.md` with verbatim, + source-checked quotes — the PreToolUse hook blocks the write if any quote + isn't in the snippet cache. +5. For monocyte specifically: cross-reference #12's requested corrections + (mouse F4/80/Ly-6C fix, the human CD45+/CD66b-/CD3-/... panel, the + CD192/CX3CR1 caveat, the duplicated CL description, the CX3CCR1 typo) and + comment on #12 with which are literature-supported. + +**Acceptance criteria:** 14/14 Milestone 2 categories have a literature +report; #12 has a comment linking the new monocyte report to its specific +marker-string requests. + +**Skill/CLI:** `citation-traversal`, `soulcap-europepmc`. + +### N2. Run the first full Milestone 3 audit — **Independent** (depends on October item O1) + +The first time this milestone produces its *intended* deliverable — checking +each proposal's explicit broad/exact typing — instead of the reduced +drift-only version run since July. + +1. Re-sync (`uv run soulcap-sync`) and confirm the new broad/exact + comment + columns from O1 are actually present before proceeding. +2. Run `mapping-audit` across all 80 curated proposals in full mode. +3. Cross-check each proposal's `match_type` against the Sheet's new explicit + broad/exact field — flag every mismatch, not just marker/literature drift. +4. Write the Milestone 3 deliverable: unsupported, mis-typed, or contradicted + mappings, with evidence for each. + +**Acceptance criteria:** a dated M3 report exists covering all 80 proposals +with broad/exact intent checked against Sheet-declared values; ROADMAP.md's +M3 status moves off ⛔. + +**Skill/CLI:** `mapping-audit`, `uv run soulcap-sync`. + +### N3. Propose CL matches for the remaining 47 entities — **Independent** + +Extends `soulcap-cl-matching` coverage past 80/127 — but N2's audit findings +on the existing 80 take priority over reaching for the 47 with none yet. + +1. Pull N2's list of proposals flagged as needing correction, not just the + 47 entities in `mappings/soulcap_entities.tsv` with no row in + `curated_mappings.tsv` — work the corrections first. +2. Then work down the 47 absent entities, running `soulcap-cl-matching` + (marker-axiom + lexical, cross-checked, OLS4-verified) per entity. +3. For any entity with no reasonable CL candidate, or a real Sheet/CL data + problem instead of a matching problem, log it to `reports/gaps.tsv` + rather than forcing a weak match. +4. Update `reports/candidate_cl_mappings.md` and re-run `soulcap-sssom` so + the SSSOM export reflects the new rows. + +**Acceptance criteria:** `curated_mappings.tsv` coverage grows past 80/127; +every new row carries rationale + marker/literature evidence; every entity +that genuinely can't be matched has a `gaps.tsv` row instead of being +silently skipped. + +**Skill/CLI:** `soulcap-cl-matching`, `soulcap-sssom`. + +### N4. File upstream CL corrections as they surface — **Independent** + +Continue the #13/#14 pattern for whatever N1 and N3 turn up this month. + +1. Log each newly found CL gap or error to `reports/cl_term_issues.md` as it + surfaces during N1/N3 work. +2. Open a `cl-correction`-labelled issue in this repo per finding, matching + #13/#14's structure. +3. File the same correction upstream to `obophenotype/cell-ontology`, + linking back the way #13 links to CL#3663/CL#3664. +4. Add the new row to ROADMAP.md's CL term corrections table. + +**Acceptance criteria:** every new finding this month has the full +three-tier trail: `cl_term_issues.md` → repo issue → upstream CL issue link, +and a matching ROADMAP.md row. + +**Skill/CLI:** manual, following the #13/#14 pattern. + +--- + +## December — validate and consolidate + +Four items. Turn "provisional agreement" into a first real accuracy number +and leave a clean account of what's reviewed versus still open. + +### D1. Independently annotate the benchmark reserve — **Blocked · external** + +`mappings/benchmark_reserve.json` already freezes five entities from five +distinct profile groups — SC000078, SC000077, SC000115, SC000124, SC000116 — +explicitly as an unlabelled, unvalidated reserve pending exactly this step. + +1. Freeze the matcher/configuration for the duration of annotation — no + further `marker_resolution.py` changes mid-review. +2. Get an annotator blind to candidate rankings (per the reserve file's own + limitations section, this likely rules out whoever built the rankings) to + label the five entities. +3. Record lineage/tissue/specimen fit, reviewer identity, date, and sources + for each — plus both directions of the proposed relation. +4. Adjudicate any disagreement, preserving "unsupported / no match" as a + valid outcome rather than forcing a target. +5. Evaluate in an isolated snapshot — the default evaluator includes + development proposals, so reserve labels must **not** be merged into + `curated_mappings.tsv` or the default benchmark. + +**Acceptance criteria:** all 5 reserve entities carry an independent label +with reviewer/date/sources; a held-out accuracy figure exists, computed +separately from the development-set evaluation; no reserve label appears in +`curated_mappings.tsv`. + +**Skill/CLI:** `uv run soulcap-evaluate` for the isolated pass. Annotation +itself is human-only. + +### D2. Refresh the audit dashboard and matcher evaluation — **Independent** + +Re-run against the now-larger reviewed set from N2/N3/D1 rather than leaving +September's snapshot as the standing reference. + +1. Re-run `uv run soulcap-audit` to regenerate `reports/audit_dashboard.html`, + `audit_summary.md`, and `audit_data.json`. +2. Re-run `uv run soulcap-evaluate` for a refreshed matcher evaluation report. +3. Diff both against the September baselines in + `reports/regression-followup/` and `reports/resolver-refinement/` — any + metric regression must be explained, not silently accepted. + +**Acceptance criteria:** dashboard and evaluation artifacts carry a December +timestamp reflecting the expanded mapping set; any regression vs. the +September baseline has a written explanation. + +**Skill/CLI:** `uv run soulcap-audit`, `uv run soulcap-evaluate`. + +### D3. Compile the end-of-semester report — **Both** + +The hand-off document to Dr. Diehl — an explicit reviewed-vs-provisional +accounting, not a restatement of raw coverage counts. + +1. Run roadmap-status-sync once more to lock in the semester's final + ROADMAP.md state. +2. Pull coverage counts: entities mapped, literature categories done, gaps + filed vs. still open, resolver holds resolved since O5. +3. Write the reviewed-vs-provisional accounting itself — how many proposals + moved from `needs_review` to curator-signed-off after O5 and N2, stated + as a number, not an impression. +4. Hand the compiled report to Dr. Diehl. + +**Acceptance criteria:** a single report states exact end-of-semester counts, +separating what's been reviewed/signed-off from what's still provisional, +and reaches Dr. Diehl. + +**Skill/CLI:** `roadmap-status-sync`. Compilation itself is manual. + +### D4. Retro and groom the spring backlog — **Both** + +A planning conversation, not a solo task — but the inputs to it are all +things this repo can pull together first. + +1. Re-run gap-issue-filing's read-only listing step to see what's still + `open` in `gaps.tsv` after O2 and N4's filings. +2. Check the status of every upstream CL issue (#13, #14, and whatever N4 + added) via `gh issue view` and the linked upstream + `obophenotype/cell-ontology` issues. +3. Bring the resulting list — plus D3's reviewed-vs-provisional numbers — to + Dr. Diehl to decide which milestone leads spring. + +**Acceptance criteria:** a short, named spring-priorities list (top 3–5 +carried-over items, each with an owner) exists, agreed with Dr. Diehl. + +**Skill/CLI:** `gap-issue-filing`, `gh issue view`. + +--- + +## Running through all three months + +- **CI stays green** — *Independent.* Tests, ruff, and mypy pass before + every merge — the standing bar in CLAUDE.md's "Before committing" section, + unchanged by this plan: `uv run pytest` then `uv run ruff check .`. +- **Weekly sync with Dr. Diehl** — *Blocked · external.* Milestone 2 is his + lane and O1's Sheet unblock depends on someone outside the repo — a short + weekly check-in keeps either from silently stalling again like #5 did. +- **No claims ahead of evidence** — *Independent.* Keep `needs_review` / + provisional language everywhere it's earned — D1's held-out figure and + D3's report are the two places this principle gets tested hardest this + semester. + +--- + +Built from ROADMAP.md, `reports/gaps.tsv`, and issues #5, #6, #7, #12, #13, +#14 as of 2026-09-18. No scope beyond what those sources already state. diff --git a/reports/gaps.tsv b/reports/gaps.tsv index 7670ad8..f5878ba 100644 --- a/reports/gaps.tsv +++ b/reports/gaps.tsv @@ -1,18 +1,18 @@ soulcap_abbreviation soulcap_full_name gap_type description related_cl_ids evidence status repo_issue date_logged NK Natural Killer Cell cl_axiom_gap CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the field-standard defining positive marker CD56 is absent from its own axioms, though present on its child terms. CL:0000623 reports/cl_pro_relationships.md; reports/literature/nk_cell_markers.md; reports/cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623 open (not yet filed) 2026-07-22 -NK1 / NK3 Natural Killer Cell 1 / Natural Killer Cell 3 cl_axiom_gap CL:0000939 (CD16-positive, CD56-dim NK cell, human) does not distinguish CD57-negative (NK1) from CD57-positive (NK3) substates; both SOULCAP rows currently map to the same CL term at Broad match type. CL:0000939 reports/candidate_cl_mappings.md#ctnk--nk1--nk3--cytotoxic-natural-killer-cell-cd16-positive open (not yet filed) 2026-07-22 +NK1 / NK3 Natural Killer Cell 1 / Natural Killer Cell 3 cl_axiom_gap CL:0000939 (CD16-positive, CD56-dim NK cell, human) does not distinguish CD57-negative (NK1) from CD57-positive (NK3) substates; both SOULCAP rows currently map to the same CL term at Broad match type. CL:0000939 reports/candidate_cl_mappings_narrative.md#ctnk--nk1--nk3--cytotoxic-natural-killer-cell-cd16-positive open (not yet filed) 2026-07-22 ILC1 Innate Lymphoid Cell 1 cl_axiom_gap No human-specific "group 1 innate lymphoid cell" CL term exists, unlike group 2 (CL:0001081) and group 3 (CL:0001078); confirmed by direct OLS4 search returning zero hits for the human-qualified query. CL:0001067 reports/cl_term_issues.md#missing-human-specific-group-1-innate-lymphoid-cell-term filed_as_issue https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14 2026-07-23 Transitional Transitional B cell no_reasonable_cl_match SOULCAP row has all four marker columns (Required/Ideal exclusion, Required/Ideal phenotypic markers) completely empty in the master sheet — there is no marker definition to match against at all, so no CL candidate can be derived from markers. Distinct from the more specific "T3" (Transitional B cell 3) row, which does have marker data. (none) reports/candidate_cl_mappings_batch.tsv (note column); data/marker_combinations.csv open (not yet filed) 2026-07-24 -CTNK Cytotoxic Natural Killer Cell sheet_data_issue Sheet's Full Name reads "Cytotoxice Natural Killer Cell" (typo, extra trailing "e"); this broke batch lexical search entirely for the row (zero OLS4 hits). Marker-based match was unaffected. Cannot be fixed in this repo — requires a correction in the Google Sheet master. CL:0000939 reports/candidate_cl_mappings.md#dc-family--dendritic-cells open (not yet filed) 2026-07-22 -pDC Peripheral Dendritic Cell (as written) sheet_data_issue Sheet's Full Name reads "Peripheral Dendritic Cell," but the row's markers (CD123hi, CD303+, low CD33) are the textbook definition of plasmacytoid dendritic cells — likely a wrong word, should probably read "Plasmacytoid." This broke batch lexical search (returned an unrelated "migratory dendritic cell" hit). Cannot be fixed in this repo — requires a correction in the Google Sheet master. CL:0001058 reports/candidate_cl_mappings.md#dc-family--dendritic-cells open (not yet filed) 2026-07-22 -Mono Monocyte cl_axiom_gap CL:0000576 (plain "monocyte") has zero marker axiom rows in cl_pro_relationships.tsv — same parent-class axiom-gap pattern as NK/ILC/cDC/B cell. Match is lexical-only (OAK-verified), not marker-confirmed. CL:0000576 reports/candidate_cl_mappings.md#monocyte-family; reports/cl_pro_relationships.tsv open (not yet filed) 2026-07-24 -CMo / NCMo / IntMo Classical / Non-classical / Intermediate Monocyte cl_axiom_gap CL:0000860/CL:0000875/CL:0002393 assert only CCR2 (CD192) and CX3CR1 status plus lineage negatives — none assert the CD14/CD16 axioms that actually define these three subsets per Ziegler-Heitbrock et al. 2010 (PMID:20628149). Already covered by repo issue #12 (filed upstream as CL#3665) — not a new gap, cited here for context on why these rows can only be matched lexically. CL:0000860; CL:0000875; CL:0002393 reports/candidate_cl_mappings.md#monocyte-family; https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12 filed_as_issue https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12 2026-07-24 -Mono / CMo / NCMo / IntMo Monocyte family sheet_data_issue Required exclusion column reads "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)" for all four rows — the second group is missing a "]" after CD123hi (likely should read "([CD123hi]-|CD193-)", matching the cDC/pDC pattern). Cannot be fixed in this repo — requires a correction in the Google Sheet master. (none) reports/candidate_cl_mappings.md#monocyte-family; data/marker_combinations.csv open (not yet filed) 2026-07-24 -B cell B cell cl_axiom_gap CL:0000236 (plain "B cell") has zero marker axiom rows in cl_pro_relationships.tsv — same parent-class axiom-gap pattern as NK/ILC/cDC/monocyte. Match is lexical-only (OAK-verified after OLS4 REST search returned zero hits for this exact query), not marker-confirmed. CL:0000236 reports/candidate_cl_mappings.md#b-cell-parent; reports/cl_pro_relationships.tsv open (not yet filed) 2026-07-24 -BDN1 / BDN2 / BDN3 / BDN4 Double Negative B cell 1-4 cl_axiom_gap SOULCAP defines four "double negative" B cell subsets (DN1-4, the atypical/age-associated B cell scheme from the autoimmunity/aging literature) via CD21/CD11c/CD185/IgE combinations. CL has only the general parent CL:0000981 "double negative memory B cell" with no DN1-4 subtyping; direct searches for "DN1 B cell" through "DN4 B cell" and "atypical memory B cell" returned zero CL hits. All four SOULCAP rows currently collapse to the same Broad match. CL:0000981 reports/candidate_cl_mappings.md#b-cell-maturation-tree--transitional--mature--naive--double-negative open (not yet filed) 2026-07-24 -IgD only IgD only Memory B cell cl_axiom_gap SOULCAP distinguishes IgD+IgM- ("IgD only") from IgD+IgM+ ("Unswitched") memory B cells as two separate populations. No CL term exists for the IgD+IgM- subset — direct searches for "IgD-positive memory B cell" and "IgD only memory B cell" returned zero hits; the only IgD-related term found, CL:0001053 "IgD-negative memory B cell," is the opposite polarity. Left unmapped rather than forced onto a wrong-polarity term. CL:0001053 (wrong polarity, not used) reports/candidate_cl_mappings.md#memory-b-cell-tree open (not yet filed) 2026-07-24 -CD4+ T cell / CD8+ T cell / CD4+/CD8+ T cell / CD4-/CD8- T cell / CD4+/CD8+ TCRab T cell / CD4-/CD8- TCRab T cell / CD4+ TCRgd T cell / CD8+ TCRgd T cell / CD4+/CD8+ TCRgd various cl_axiom_gap CL organizes CD4/CD8 status primarily under the alpha-beta T cell lineage: no combined alpha-beta+gamma-delta CD4/CD8 terms exist, no clean double-positive alpha-beta term exists, and the only double-negative term found (CL:0002489) is a thymocyte-stage term (wrong tissue for a blood/PBMC panel). All 9 rows Broad-matched to the nearest alpha-beta or gamma-delta parent with this gap noted. CL:0000624; CL:0000625; CL:0000789; CL:0000084; CL:0000798 reports/candidate_cl_mappings.md#combined-lineage-b-and-double-positivedouble-negative-gaps open (not yet filed) 2026-07-24 -CD56+ T cell family (13 rows) various CD56+ T cell subsets cl_axiom_gap SOULCAP crosses CD56 positivity with CD4/CD8/DP/DN status and TCRab/TCRgd lineage (13 variants); CL has only one term at this level (CL:4052055, pending rename to "CD56-positive T cell, human" per issue #13) with no further subdivision. All 13 rows Broad-match to CL:4052055. CL:4052055 reports/candidate_cl_mappings.md#cd56-t-cell-family; https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13 open (not yet filed) 2026-07-24 -Tcm / Tem / Temra (general, no CD4/CD8 split) and all TCRgd-specific Tnaive/Tcm/Tem/Temra rows various cl_axiom_gap CL has no generic central/effector memory T cell term spanning both CD4 and CD8 (only CD4-specific and CD8-specific versions exist), and no gamma-delta-specific differentiation-state terms at all. ~13 rows Broad-matched to the nearest available parent (CL:0000084 T cell, or CL:0000798 gamma-delta T cell) with this gap noted. CL:0000084; CL:0000798 reports/candidate_cl_mappings.md#naive--central-memory--effector-memory--temra-tree open (not yet filed) 2026-07-24 -CD8+ Temra / CD8+ TCRab Temra CD8+ CD45RA+ effector memory T cell cl_axiom_gap CL:4030002 (effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated) appears to be CD4-specific only; no CD8+ counterpart with the same "terminally differentiated" qualifier was found — only the non-TEMRA-specific CL:0000913 (effector memory CD8-positive, alpha-beta T cell). Possible asymmetry in CL's own hierarchy; needs a second look before concluding it's a genuine omission rather than differently-named. CL:4030002; CL:0000913 reports/candidate_cl_mappings.md#naive--central-memory--effector-memory--temra-tree open (not yet filed) 2026-07-24 -(26 rows, various abbreviations) (no Full Name in sheet) sheet_data_issue 26 rows in the T cell branch have a completely empty Full Name field, so no name-based match can be attempted (Conv TCRab family, T helper, T cytotoxic, Tfh, CD4 PanT helper/Treg, ConT Treg-like/Tfh-like, Th1/2/9/17-like, Vg9/Vd1/Vd2/Vd3 subsets). Additionally, Th1-like/Th2-like/Th9-like/Th17-like each appear TWICE in the sheet: one copy (parented under "CD4 ConT") has iNKT-style TCRVa24-Ja18/CD1d-a-GalCer markers that look copy-pasted from an unrelated row; the other (no parent) has the correct Th-subset chemokine receptor panel (CD183/CD185/CD194/CD196). Likely a genuine sheet data bug, not two intentional variants. Cannot be fixed here — requires correction in the Google Sheet master. CL:0000912 (T helper, once named); CL:0000910 (T cytotoxic, once named) reports/candidate_cl_mappings.md#rows-with-no-full-name-in-the-sheet--not-mapped open (not yet filed) 2026-07-24 +CTNK Cytotoxic Natural Killer Cell sheet_data_issue Sheet's Full Name reads "Cytotoxice Natural Killer Cell" (typo, extra trailing "e"); this broke batch lexical search entirely for the row (zero OLS4 hits). Marker-based match was unaffected. Cannot be fixed in this repo — requires a correction in the Google Sheet master. CL:0000939 reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells open (not yet filed) 2026-07-22 +pDC Peripheral Dendritic Cell (as written) sheet_data_issue Sheet's Full Name reads "Peripheral Dendritic Cell," but the row's markers (CD123hi, CD303+, low CD33) are the textbook definition of plasmacytoid dendritic cells — likely a wrong word, should probably read "Plasmacytoid." This broke batch lexical search (returned an unrelated "migratory dendritic cell" hit). Cannot be fixed in this repo — requires a correction in the Google Sheet master. CL:0001058 reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells open (not yet filed) 2026-07-22 +Mono Monocyte cl_axiom_gap CL:0000576 (plain "monocyte") has zero marker axiom rows in cl_pro_relationships.tsv — same parent-class axiom-gap pattern as NK/ILC/cDC/B cell. Match is lexical-only (OAK-verified), not marker-confirmed. CL:0000576 reports/candidate_cl_mappings_narrative.md#monocyte-family; reports/cl_pro_relationships.tsv open (not yet filed) 2026-07-24 +CMo / NCMo / IntMo Classical / Non-classical / Intermediate Monocyte cl_axiom_gap CL:0000860/CL:0000875/CL:0002393 assert only CCR2 (CD192) and CX3CR1 status plus lineage negatives — none assert the CD14/CD16 axioms that actually define these three subsets per Ziegler-Heitbrock et al. 2010 (PMID:20628149). Already covered by repo issue #12 (filed upstream as CL#3665) — not a new gap, cited here for context on why these rows can only be matched lexically. CL:0000860; CL:0000875; CL:0002393 reports/candidate_cl_mappings_narrative.md#monocyte-family; https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12 filed_as_issue https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12 2026-07-24 +Mono / CMo / NCMo / IntMo Monocyte family sheet_data_issue Required exclusion column reads "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)" for all four rows — the second group is missing a "]" after CD123hi (likely should read "([CD123hi]-|CD193-)", matching the cDC/pDC pattern). Cannot be fixed in this repo — requires a correction in the Google Sheet master. (none) reports/candidate_cl_mappings_narrative.md#monocyte-family; data/marker_combinations.csv open (not yet filed) 2026-07-24 +B cell B cell cl_axiom_gap CL:0000236 (plain "B cell") has zero marker axiom rows in cl_pro_relationships.tsv — same parent-class axiom-gap pattern as NK/ILC/cDC/monocyte. Match is lexical-only (OAK-verified after OLS4 REST search returned zero hits for this exact query), not marker-confirmed. CL:0000236 reports/candidate_cl_mappings_narrative.md#b-cell-parent; reports/cl_pro_relationships.tsv open (not yet filed) 2026-07-24 +BDN1 / BDN2 / BDN3 / BDN4 Double Negative B cell 1-4 cl_axiom_gap SOULCAP defines four "double negative" B cell subsets (DN1-4, the atypical/age-associated B cell scheme from the autoimmunity/aging literature) via CD21/CD11c/CD185/IgE combinations. CL has only the general parent CL:0000981 "double negative memory B cell" with no DN1-4 subtyping; direct searches for "DN1 B cell" through "DN4 B cell" and "atypical memory B cell" returned zero CL hits. All four SOULCAP rows currently collapse to the same Broad match. CL:0000981 reports/candidate_cl_mappings_narrative.md#b-cell-maturation-tree--transitional--mature--naive--double-negative open (not yet filed) 2026-07-24 +IgD only IgD only Memory B cell cl_axiom_gap SOULCAP distinguishes IgD+IgM- ("IgD only") from IgD+IgM+ ("Unswitched") memory B cells as two separate populations. No CL term exists for the IgD+IgM- subset — direct searches for "IgD-positive memory B cell" and "IgD only memory B cell" returned zero hits; the only IgD-related term found, CL:0001053 "IgD-negative memory B cell," is the opposite polarity. Left unmapped rather than forced onto a wrong-polarity term. CL:0001053 (wrong polarity, not used) reports/candidate_cl_mappings_narrative.md#memory-b-cell-tree open (not yet filed) 2026-07-24 +CD4+ T cell / CD8+ T cell / CD4+/CD8+ T cell / CD4-/CD8- T cell / CD4+/CD8+ TCRab T cell / CD4-/CD8- TCRab T cell / CD4+ TCRgd T cell / CD8+ TCRgd T cell / CD4+/CD8+ TCRgd various cl_axiom_gap CL organizes CD4/CD8 status primarily under the alpha-beta T cell lineage: no combined alpha-beta+gamma-delta CD4/CD8 terms exist, no clean double-positive alpha-beta term exists, and the only double-negative term found (CL:0002489) is a thymocyte-stage term (wrong tissue for a blood/PBMC panel). All 9 rows Broad-matched to the nearest alpha-beta or gamma-delta parent with this gap noted. CL:0000624; CL:0000625; CL:0000789; CL:0000084; CL:0000798 reports/candidate_cl_mappings_narrative.md#combined-lineage-b-and-double-positivedouble-negative-gaps open (not yet filed) 2026-07-24 +CD56+ T cell family (13 rows) various CD56+ T cell subsets cl_axiom_gap SOULCAP crosses CD56 positivity with CD4/CD8/DP/DN status and TCRab/TCRgd lineage (13 variants); CL has only one term at this level (CL:4052055, pending rename to "CD56-positive T cell, human" per issue #13) with no further subdivision. All 13 rows Broad-match to CL:4052055. CL:4052055 reports/candidate_cl_mappings_narrative.md#cd56-t-cell-family; https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13 open (not yet filed) 2026-07-24 +Tcm / Tem / Temra (general, no CD4/CD8 split) and all TCRgd-specific Tnaive/Tcm/Tem/Temra rows various cl_axiom_gap CL has no generic central/effector memory T cell term spanning both CD4 and CD8 (only CD4-specific and CD8-specific versions exist), and no gamma-delta-specific differentiation-state terms at all. ~13 rows Broad-matched to the nearest available parent (CL:0000084 T cell, or CL:0000798 gamma-delta T cell) with this gap noted. CL:0000084; CL:0000798 reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree open (not yet filed) 2026-07-24 +CD8+ Temra / CD8+ TCRab Temra CD8+ CD45RA+ effector memory T cell cl_axiom_gap CL:4030002 (effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated) appears to be CD4-specific only; no CD8+ counterpart with the same "terminally differentiated" qualifier was found — only the non-TEMRA-specific CL:0000913 (effector memory CD8-positive, alpha-beta T cell). Possible asymmetry in CL's own hierarchy; needs a second look before concluding it's a genuine omission rather than differently-named. CL:4030002; CL:0000913 reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree open (not yet filed) 2026-07-24 +(26 rows, various abbreviations) (no Full Name in sheet) sheet_data_issue 26 rows in the T cell branch have a completely empty Full Name field, so no name-based match can be attempted (Conv TCRab family, T helper, T cytotoxic, Tfh, CD4 PanT helper/Treg, ConT Treg-like/Tfh-like, Th1/2/9/17-like, Vg9/Vd1/Vd2/Vd3 subsets). Additionally, Th1-like/Th2-like/Th9-like/Th17-like each appear TWICE in the sheet: one copy (parented under "CD4 ConT") has iNKT-style TCRVa24-Ja18/CD1d-a-GalCer markers that look copy-pasted from an unrelated row; the other (no parent) has the correct Th-subset chemokine receptor panel (CD183/CD185/CD194/CD196). Likely a genuine sheet data bug, not two intentional variants. Cannot be fixed here — requires correction in the Google Sheet master. CL:0000912 (T helper, once named); CL:0000910 (T cytotoxic, once named) reports/candidate_cl_mappings_narrative.md#rows-with-no-full-name-in-the-sheet--not-mapped open (not yet filed) 2026-07-24 diff --git a/reports/marker_resolution_audit.json b/reports/marker_resolution_audit.json new file mode 100644 index 0000000..8c6974a --- /dev/null +++ b/reports/marker_resolution_audit.json @@ -0,0 +1,23661 @@ +{ + "schema_version": 1, + "generated_utc": "2026-09-11T04:13:34.206460+00:00", + "inputs": { + "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\data\\marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44", + "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8", + "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e", + "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\reports\\cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c", + "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\marker_mappings\\marker_protein_gene.csv": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7", + "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\marker_mappings\\marker_resolution.tsv": "317578b4b7fb1a9837b9a61fa85c2dc1ea6469eab4404b0435476ba4a12a1f84" + }, + "note": "Same source and axiom snapshots; no lexical expansion. Counts describe computational evidence, not biological accuracy. Source usage comes from valid cells only.", + "summary": { + "normalized_markers": 73, + "registry_rows": 75, + "representations": { + "single_protein": 51, + "unresolved": 9, + "reagent_gate": 3, + "complex": 4, + "protein_family": 6 + }, + "markers_gaining_axioms": 6, + "markers_losing_axioms": 11, + "mapping_status_changes": 0 + }, + "markers": [ + { + "marker_token": "CCR4", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CCR4", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CCR4", + "registry_tokens": [ + "CCR4" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 4, + "gained": 4, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000115" + ] + }, + { + "marker_token": "CCR6", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CCR6", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CCR6", + "registry_tokens": [ + "CCR6" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 8, + "gained": 8, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000115" + ] + }, + { + "marker_token": "CD10", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD10", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD10", + "registry_tokens": [ + "CD10" + ], + "legacy_axiom_rows": 20, + "enhanced_axiom_rows": 20, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000028", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036" + ] + }, + { + "marker_token": "CD117", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD117", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD117", + "registry_tokens": [ + "CD117" + ], + "legacy_axiom_rows": 49, + "enhanced_axiom_rows": 44, + "gained": 0, + "lost": 5, + "affected_subjects": [ + "SOULCAP:SC000006", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010" + ] + }, + { + "marker_token": "CD11C", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD11C", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD11c", + "registry_tokens": [ + "CD11c" + ], + "legacy_axiom_rows": 85, + "enhanced_axiom_rows": 85, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000017", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000059", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000074", + "SOULCAP:SC000075", + "SOULCAP:SC000076", + "SOULCAP:SC000077", + "SOULCAP:SC000078", + "SOULCAP:SC000079", + "SOULCAP:SC000080", + "SOULCAP:SC000081", + "SOULCAP:SC000082", + "SOULCAP:SC000083", + "SOULCAP:SC000084", + "SOULCAP:SC000085", + "SOULCAP:SC000086", + "SOULCAP:SC000087", + "SOULCAP:SC000088", + "SOULCAP:SC000089", + "SOULCAP:SC000090", + "SOULCAP:SC000091", + "SOULCAP:SC000092", + "SOULCAP:SC000093", + "SOULCAP:SC000094", + "SOULCAP:SC000095", + "SOULCAP:SC000096", + "SOULCAP:SC000097", + "SOULCAP:SC000098", + "SOULCAP:SC000099", + "SOULCAP:SC000100", + "SOULCAP:SC000101", + "SOULCAP:SC000102", + "SOULCAP:SC000103", + "SOULCAP:SC000104", + "SOULCAP:SC000105", + "SOULCAP:SC000106", + "SOULCAP:SC000107", + "SOULCAP:SC000108", + "SOULCAP:SC000109", + "SOULCAP:SC000110", + "SOULCAP:SC000111", + "SOULCAP:SC000112", + "SOULCAP:SC000113", + "SOULCAP:SC000114", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000120", + "SOULCAP:SC000121", + "SOULCAP:SC000122", + "SOULCAP:SC000123", + "SOULCAP:SC000124", + "SOULCAP:SC000125", + "SOULCAP:SC000126", + "SOULCAP:SC000127" + ] + }, + { + "marker_token": "CD123", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD123", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD123", + "registry_tokens": [ + "CD123" + ], + "legacy_axiom_rows": 31, + "enhanced_axiom_rows": 31, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000014", + "SOULCAP:SC000015", + "SOULCAP:SC000016", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000059", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000074", + "SOULCAP:SC000075", + "SOULCAP:SC000076", + "SOULCAP:SC000077", + "SOULCAP:SC000078", + "SOULCAP:SC000079", + "SOULCAP:SC000080", + "SOULCAP:SC000081", + "SOULCAP:SC000082", + "SOULCAP:SC000083", + "SOULCAP:SC000084", + "SOULCAP:SC000085", + "SOULCAP:SC000086", + "SOULCAP:SC000087", + "SOULCAP:SC000088", + "SOULCAP:SC000089", + "SOULCAP:SC000090", + "SOULCAP:SC000091", + "SOULCAP:SC000092", + "SOULCAP:SC000093", + "SOULCAP:SC000094", + "SOULCAP:SC000095", + "SOULCAP:SC000096", + "SOULCAP:SC000097", + "SOULCAP:SC000098", + "SOULCAP:SC000099", + "SOULCAP:SC000100", + "SOULCAP:SC000101", + "SOULCAP:SC000102", + "SOULCAP:SC000103", + "SOULCAP:SC000104", + "SOULCAP:SC000105", + "SOULCAP:SC000106", + "SOULCAP:SC000107", + "SOULCAP:SC000108", + "SOULCAP:SC000109", + "SOULCAP:SC000110", + "SOULCAP:SC000111", + "SOULCAP:SC000112", + "SOULCAP:SC000113", + "SOULCAP:SC000114", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000120", + "SOULCAP:SC000121", + "SOULCAP:SC000122", + "SOULCAP:SC000123", + "SOULCAP:SC000124", + "SOULCAP:SC000125", + "SOULCAP:SC000126", + "SOULCAP:SC000127" + ] + }, + { + "marker_token": "CD127", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD127", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD127", + "registry_tokens": [ + "CD127" + ], + "legacy_axiom_rows": 58, + "enhanced_axiom_rows": 53, + "gained": 0, + "lost": 5, + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000006", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000014", + "SOULCAP:SC000015", + "SOULCAP:SC000016", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000121" + ] + }, + { + "marker_token": "CD138", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD138", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD138", + "registry_tokens": [ + "CD138" + ], + "legacy_axiom_rows": 52, + "enhanced_axiom_rows": 52, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000025", + "SOULCAP:SC000026" + ] + }, + { + "marker_token": "CD14", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD14", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD14", + "registry_tokens": [ + "CD14" + ], + "legacy_axiom_rows": 108, + "enhanced_axiom_rows": 108, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000014", + "SOULCAP:SC000015", + "SOULCAP:SC000017", + "SOULCAP:SC000018", + "SOULCAP:SC000019", + "SOULCAP:SC000020", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000059", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000074", + "SOULCAP:SC000075", + "SOULCAP:SC000076", + "SOULCAP:SC000077", + "SOULCAP:SC000078", + "SOULCAP:SC000079", + "SOULCAP:SC000080", + "SOULCAP:SC000081", + "SOULCAP:SC000082", + "SOULCAP:SC000083", + "SOULCAP:SC000084", + "SOULCAP:SC000085", + "SOULCAP:SC000086", + "SOULCAP:SC000087", + "SOULCAP:SC000088", + "SOULCAP:SC000089", + "SOULCAP:SC000090", + "SOULCAP:SC000091", + "SOULCAP:SC000092", + "SOULCAP:SC000093", + "SOULCAP:SC000094", + "SOULCAP:SC000095", + "SOULCAP:SC000096", + "SOULCAP:SC000097", + "SOULCAP:SC000098", + "SOULCAP:SC000099", + "SOULCAP:SC000100", + "SOULCAP:SC000101", + "SOULCAP:SC000102", + "SOULCAP:SC000103", + "SOULCAP:SC000104", + "SOULCAP:SC000105", + "SOULCAP:SC000106", + "SOULCAP:SC000107", + "SOULCAP:SC000108", + "SOULCAP:SC000109", + "SOULCAP:SC000110", + "SOULCAP:SC000111", + "SOULCAP:SC000112", + "SOULCAP:SC000113", + "SOULCAP:SC000114", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000120", + "SOULCAP:SC000121", + "SOULCAP:SC000122", + "SOULCAP:SC000123", + "SOULCAP:SC000124", + "SOULCAP:SC000125", + "SOULCAP:SC000126", + "SOULCAP:SC000127" + ] + }, + { + "marker_token": "CD141", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD141", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD141", + "registry_tokens": [ + "CD141" + ], + "legacy_axiom_rows": 1, + "enhanced_axiom_rows": 1, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000012", + "SOULCAP:SC000013" + ] + }, + { + "marker_token": "CD15", + "representation": "unresolved", + "protein_resolution": "withhold", + "canonical": "CD15", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD15", + "registry_tokens": [ + "CD15" + ], + "legacy_axiom_rows": 15, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 15, + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000014", + "SOULCAP:SC000015", + "SOULCAP:SC000016", + "SOULCAP:SC000017", + "SOULCAP:SC000018", + "SOULCAP:SC000019", + "SOULCAP:SC000020", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000059", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000074", + "SOULCAP:SC000075", + "SOULCAP:SC000076", + "SOULCAP:SC000077", + "SOULCAP:SC000078", + "SOULCAP:SC000079", + "SOULCAP:SC000080", + "SOULCAP:SC000081", + "SOULCAP:SC000082", + "SOULCAP:SC000083", + "SOULCAP:SC000084", + "SOULCAP:SC000085", + "SOULCAP:SC000086", + "SOULCAP:SC000087", + "SOULCAP:SC000088", + "SOULCAP:SC000089", + "SOULCAP:SC000090", + "SOULCAP:SC000091", + "SOULCAP:SC000092", + "SOULCAP:SC000093", + "SOULCAP:SC000094", + "SOULCAP:SC000095", + "SOULCAP:SC000096", + "SOULCAP:SC000097", + "SOULCAP:SC000098", + "SOULCAP:SC000099", + "SOULCAP:SC000100", + "SOULCAP:SC000101", + "SOULCAP:SC000102", + "SOULCAP:SC000103", + "SOULCAP:SC000104", + "SOULCAP:SC000105", + "SOULCAP:SC000106", + "SOULCAP:SC000107", + "SOULCAP:SC000108", + "SOULCAP:SC000109", + "SOULCAP:SC000110", + "SOULCAP:SC000111", + "SOULCAP:SC000112", + "SOULCAP:SC000113", + "SOULCAP:SC000114", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000120", + "SOULCAP:SC000121", + "SOULCAP:SC000122", + "SOULCAP:SC000123", + "SOULCAP:SC000124", + "SOULCAP:SC000125", + "SOULCAP:SC000126", + "SOULCAP:SC000127" + ] + }, + { + "marker_token": "CD16", + "representation": "unresolved", + "protein_resolution": "withhold", + "canonical": "CD16", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD16", + "registry_tokens": [ + "CD16" + ], + "legacy_axiom_rows": 29, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 29, + "affected_subjects": [ + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000014", + "SOULCAP:SC000015", + "SOULCAP:SC000018", + "SOULCAP:SC000019", + "SOULCAP:SC000020", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000059", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000074", + "SOULCAP:SC000075", + "SOULCAP:SC000076", + "SOULCAP:SC000077", + "SOULCAP:SC000078", + "SOULCAP:SC000079", + "SOULCAP:SC000080", + "SOULCAP:SC000081", + "SOULCAP:SC000082", + "SOULCAP:SC000083", + "SOULCAP:SC000084", + "SOULCAP:SC000085", + "SOULCAP:SC000086", + "SOULCAP:SC000087", + "SOULCAP:SC000088", + "SOULCAP:SC000089", + "SOULCAP:SC000090", + "SOULCAP:SC000091", + "SOULCAP:SC000092", + "SOULCAP:SC000093", + "SOULCAP:SC000094", + "SOULCAP:SC000095", + "SOULCAP:SC000096", + "SOULCAP:SC000097", + "SOULCAP:SC000098", + "SOULCAP:SC000099", + "SOULCAP:SC000100", + "SOULCAP:SC000101", + "SOULCAP:SC000102", + "SOULCAP:SC000103", + "SOULCAP:SC000104", + "SOULCAP:SC000105", + "SOULCAP:SC000106", + "SOULCAP:SC000107", + "SOULCAP:SC000108", + "SOULCAP:SC000109", + "SOULCAP:SC000110", + "SOULCAP:SC000111", + "SOULCAP:SC000112", + "SOULCAP:SC000113", + "SOULCAP:SC000114", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000120", + "SOULCAP:SC000121", + "SOULCAP:SC000122", + "SOULCAP:SC000123", + "SOULCAP:SC000124", + "SOULCAP:SC000125", + "SOULCAP:SC000126", + "SOULCAP:SC000127" + ] + }, + { + "marker_token": "CD161", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD161", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD161", + "registry_tokens": [ + "CD161" + ], + "legacy_axiom_rows": 19, + "enhanced_axiom_rows": 2, + "gained": 0, + "lost": 17, + "affected_subjects": [ + "SOULCAP:SC000114" + ] + }, + { + "marker_token": "CD172A", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD172A", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD172a", + "registry_tokens": [ + "CD172a" + ], + "legacy_axiom_rows": 6, + "enhanced_axiom_rows": 6, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000012", + "SOULCAP:SC000013" + ] + }, + { + "marker_token": "CD183", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD183", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD183", + "registry_tokens": [ + "CD183" + ], + "legacy_axiom_rows": 8, + "enhanced_axiom_rows": 8, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119" + ] + }, + { + "marker_token": "CD185", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD185", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD185", + "registry_tokens": [ + "CD185" + ], + "legacy_axiom_rows": 2, + "enhanced_axiom_rows": 2, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119" + ] + }, + { + "marker_token": "CD19", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD19", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD19", + "registry_tokens": [ + "CD19" + ], + "legacy_axiom_rows": 335, + "enhanced_axiom_rows": 335, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000014", + "SOULCAP:SC000015", + "SOULCAP:SC000016", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000059", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000074", + "SOULCAP:SC000075", + "SOULCAP:SC000076", + "SOULCAP:SC000077", + "SOULCAP:SC000078", + "SOULCAP:SC000079", + "SOULCAP:SC000080", + "SOULCAP:SC000081", + "SOULCAP:SC000082", + "SOULCAP:SC000083", + "SOULCAP:SC000084", + "SOULCAP:SC000085", + "SOULCAP:SC000086", + "SOULCAP:SC000087", + "SOULCAP:SC000088", + "SOULCAP:SC000089", + "SOULCAP:SC000090", + "SOULCAP:SC000091", + "SOULCAP:SC000092", + "SOULCAP:SC000093", + "SOULCAP:SC000094", + "SOULCAP:SC000095", + "SOULCAP:SC000096", + "SOULCAP:SC000097", + "SOULCAP:SC000098", + "SOULCAP:SC000099", + "SOULCAP:SC000100", + "SOULCAP:SC000101", + "SOULCAP:SC000102", + "SOULCAP:SC000103", + "SOULCAP:SC000104", + "SOULCAP:SC000105", + "SOULCAP:SC000106", + "SOULCAP:SC000107", + "SOULCAP:SC000108", + "SOULCAP:SC000109", + "SOULCAP:SC000110", + "SOULCAP:SC000111", + "SOULCAP:SC000112", + "SOULCAP:SC000113", + "SOULCAP:SC000114", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000120", + "SOULCAP:SC000121", + "SOULCAP:SC000122", + "SOULCAP:SC000123", + "SOULCAP:SC000124", + "SOULCAP:SC000125", + "SOULCAP:SC000126", + "SOULCAP:SC000127" + ] + }, + { + "marker_token": "CD193", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD193", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD193", + "registry_tokens": [ + "CD193" + ], + "legacy_axiom_rows": 16, + "enhanced_axiom_rows": 16, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000014", + "SOULCAP:SC000015", + "SOULCAP:SC000016", + "SOULCAP:SC000021", + "SOULCAP:SC000022" + ] + }, + { + "marker_token": "CD194", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CCR4", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD194", + "registry_tokens": [ + "CD194" + ], + "legacy_axiom_rows": 4, + "enhanced_axiom_rows": 4, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119" + ] + }, + { + "marker_token": "CD196", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CCR6", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD196", + "registry_tokens": [ + "CD196" + ], + "legacy_axiom_rows": 8, + "enhanced_axiom_rows": 8, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119" + ] + }, + { + "marker_token": "CD198", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD198", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD198", + "registry_tokens": [ + "CD198" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000113", + "SOULCAP:SC000118" + ] + }, + { + "marker_token": "CD1C", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD1C", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD1c", + "registry_tokens": [ + "CD1c" + ], + "legacy_axiom_rows": 1, + "enhanced_axiom_rows": 1, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000012", + "SOULCAP:SC000013" + ] + }, + { + "marker_token": "CD1D-A-GALCER", + "representation": "reagent_gate", + "protein_resolution": "withhold", + "canonical": "CD1D-A-GALCER", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD1d-a-GalCer", + "registry_tokens": [ + "CD1d-a-GalCer" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 0, + "affected_subjects": [] + }, + { + "marker_token": "CD20", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD20", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD20", + "registry_tokens": [ + "CD20" + ], + "legacy_axiom_rows": 284, + "enhanced_axiom_rows": 284, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000059", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000074", + "SOULCAP:SC000075", + "SOULCAP:SC000076", + "SOULCAP:SC000077", + "SOULCAP:SC000078", + "SOULCAP:SC000079", + "SOULCAP:SC000080", + "SOULCAP:SC000081", + "SOULCAP:SC000082", + "SOULCAP:SC000083", + "SOULCAP:SC000084", + "SOULCAP:SC000085", + "SOULCAP:SC000086", + "SOULCAP:SC000087", + "SOULCAP:SC000088", + "SOULCAP:SC000089", + "SOULCAP:SC000090", + "SOULCAP:SC000091", + "SOULCAP:SC000092", + "SOULCAP:SC000093", + "SOULCAP:SC000094", + "SOULCAP:SC000095", + "SOULCAP:SC000096", + "SOULCAP:SC000097", + "SOULCAP:SC000098", + "SOULCAP:SC000099", + "SOULCAP:SC000100", + "SOULCAP:SC000101", + "SOULCAP:SC000102", + "SOULCAP:SC000103", + "SOULCAP:SC000104", + "SOULCAP:SC000105", + "SOULCAP:SC000106", + "SOULCAP:SC000107", + "SOULCAP:SC000108", + "SOULCAP:SC000109", + "SOULCAP:SC000110", + "SOULCAP:SC000111", + "SOULCAP:SC000112", + "SOULCAP:SC000113", + "SOULCAP:SC000114", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000120", + "SOULCAP:SC000121", + "SOULCAP:SC000122", + "SOULCAP:SC000123", + "SOULCAP:SC000124", + "SOULCAP:SC000125", + "SOULCAP:SC000126", + "SOULCAP:SC000127" + ] + }, + { + "marker_token": "CD21", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD21", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD21", + "registry_tokens": [ + "CD21" + ], + "legacy_axiom_rows": 11, + "enhanced_axiom_rows": 11, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036" + ] + }, + { + "marker_token": "CD24", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD24", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD24", + "registry_tokens": [ + "CD24" + ], + "legacy_axiom_rows": 38, + "enhanced_axiom_rows": 38, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000028", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036" + ] + }, + { + "marker_token": "CD25", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD25", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD25", + "registry_tokens": [ + "CD25" + ], + "legacy_axiom_rows": 41, + "enhanced_axiom_rows": 40, + "gained": 0, + "lost": 1, + "affected_subjects": [ + "SOULCAP:SC000121" + ] + }, + { + "marker_token": "CD27", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD27", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD27", + "registry_tokens": [ + "CD27" + ], + "legacy_axiom_rows": 49, + "enhanced_axiom_rows": 49, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044" + ] + }, + { + "marker_token": "CD294", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD294", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD294", + "registry_tokens": [ + "CD294" + ], + "legacy_axiom_rows": 1, + "enhanced_axiom_rows": 1, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000006", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000112", + "SOULCAP:SC000117" + ] + }, + { + "marker_token": "CD3", + "representation": "unresolved", + "protein_resolution": "withhold", + "canonical": "CD3", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD3", + "registry_tokens": [ + "CD3" + ], + "legacy_axiom_rows": 330, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 330, + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000006", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000014", + "SOULCAP:SC000015", + "SOULCAP:SC000016", + "SOULCAP:SC000017", + "SOULCAP:SC000018", + "SOULCAP:SC000019", + "SOULCAP:SC000020", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000121", + "SOULCAP:SC000122" + ] + }, + { + "marker_token": "CD303", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD303", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD303", + "registry_tokens": [ + "CD303" + ], + "legacy_axiom_rows": 3, + "enhanced_axiom_rows": 3, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000014", + "SOULCAP:SC000015" + ] + }, + { + "marker_token": "CD33", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD33", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD33", + "registry_tokens": [ + "CD33" + ], + "legacy_axiom_rows": 15, + "enhanced_axiom_rows": 13, + "gained": 0, + "lost": 2, + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000014", + "SOULCAP:SC000015", + "SOULCAP:SC000017", + "SOULCAP:SC000018", + "SOULCAP:SC000019", + "SOULCAP:SC000020", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000059", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000074", + "SOULCAP:SC000075", + "SOULCAP:SC000076", + "SOULCAP:SC000077", + "SOULCAP:SC000078", + "SOULCAP:SC000079", + "SOULCAP:SC000080", + "SOULCAP:SC000081", + "SOULCAP:SC000082", + "SOULCAP:SC000083", + "SOULCAP:SC000084", + "SOULCAP:SC000085", + "SOULCAP:SC000086", + "SOULCAP:SC000087", + "SOULCAP:SC000088", + "SOULCAP:SC000089", + "SOULCAP:SC000090", + "SOULCAP:SC000091", + "SOULCAP:SC000092", + "SOULCAP:SC000093", + "SOULCAP:SC000094", + "SOULCAP:SC000095", + "SOULCAP:SC000096", + "SOULCAP:SC000097", + "SOULCAP:SC000098", + "SOULCAP:SC000099", + "SOULCAP:SC000100", + "SOULCAP:SC000101", + "SOULCAP:SC000102", + "SOULCAP:SC000103", + "SOULCAP:SC000104", + "SOULCAP:SC000105", + "SOULCAP:SC000106", + "SOULCAP:SC000107", + "SOULCAP:SC000108", + "SOULCAP:SC000109", + "SOULCAP:SC000110", + "SOULCAP:SC000111", + "SOULCAP:SC000112", + "SOULCAP:SC000113", + "SOULCAP:SC000114", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000120", + "SOULCAP:SC000121", + "SOULCAP:SC000122", + "SOULCAP:SC000123", + "SOULCAP:SC000124", + "SOULCAP:SC000125", + "SOULCAP:SC000126", + "SOULCAP:SC000127" + ] + }, + { + "marker_token": "CD34", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD34", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD34", + "registry_tokens": [ + "CD34" + ], + "legacy_axiom_rows": 135, + "enhanced_axiom_rows": 130, + "gained": 0, + "lost": 5, + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010" + ] + }, + { + "marker_token": "CD38", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD38", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD38", + "registry_tokens": [ + "CD38" + ], + "legacy_axiom_rows": 59, + "enhanced_axiom_rows": 59, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044" + ] + }, + { + "marker_token": "CD4", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD4", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD4", + "registry_tokens": [ + "CD4" + ], + "legacy_axiom_rows": 196, + "enhanced_axiom_rows": 196, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000121" + ] + }, + { + "marker_token": "CD45", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD45", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD45", + "registry_tokens": [ + "CD45" + ], + "legacy_axiom_rows": 92, + "enhanced_axiom_rows": 92, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000006", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000014", + "SOULCAP:SC000015", + "SOULCAP:SC000016", + "SOULCAP:SC000017", + "SOULCAP:SC000018", + "SOULCAP:SC000019", + "SOULCAP:SC000020", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000121", + "SOULCAP:SC000122" + ] + }, + { + "marker_token": "CD56", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD56", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD56", + "registry_tokens": [ + "CD56" + ], + "legacy_axiom_rows": 181, + "enhanced_axiom_rows": 177, + "gained": 0, + "lost": 4, + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000006", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000014", + "SOULCAP:SC000015", + "SOULCAP:SC000016", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058" + ] + }, + { + "marker_token": "CD57", + "representation": "reagent_gate", + "protein_resolution": "withhold", + "canonical": "CD57", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD57", + "registry_tokens": [ + "CD57" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000002", + "SOULCAP:SC000004", + "SOULCAP:SC000005" + ] + }, + { + "marker_token": "CD64", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD64", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD64", + "registry_tokens": [ + "CD64" + ], + "legacy_axiom_rows": 1, + "enhanced_axiom_rows": 1, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000017", + "SOULCAP:SC000018", + "SOULCAP:SC000019", + "SOULCAP:SC000020", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000059", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000074", + "SOULCAP:SC000075", + "SOULCAP:SC000076", + "SOULCAP:SC000077", + "SOULCAP:SC000078", + "SOULCAP:SC000079", + "SOULCAP:SC000080", + "SOULCAP:SC000081", + "SOULCAP:SC000082", + "SOULCAP:SC000083", + "SOULCAP:SC000084", + "SOULCAP:SC000085", + "SOULCAP:SC000086", + "SOULCAP:SC000087", + "SOULCAP:SC000088", + "SOULCAP:SC000089", + "SOULCAP:SC000090", + "SOULCAP:SC000091", + "SOULCAP:SC000092", + "SOULCAP:SC000093", + "SOULCAP:SC000094", + "SOULCAP:SC000095", + "SOULCAP:SC000096", + "SOULCAP:SC000097", + "SOULCAP:SC000098", + "SOULCAP:SC000099", + "SOULCAP:SC000100", + "SOULCAP:SC000101", + "SOULCAP:SC000102", + "SOULCAP:SC000103", + "SOULCAP:SC000104", + "SOULCAP:SC000105", + "SOULCAP:SC000106", + "SOULCAP:SC000107", + "SOULCAP:SC000108", + "SOULCAP:SC000109", + "SOULCAP:SC000110", + "SOULCAP:SC000111", + "SOULCAP:SC000112", + "SOULCAP:SC000113", + "SOULCAP:SC000114", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000120", + "SOULCAP:SC000121", + "SOULCAP:SC000122", + "SOULCAP:SC000123", + "SOULCAP:SC000124", + "SOULCAP:SC000125", + "SOULCAP:SC000126", + "SOULCAP:SC000127" + ] + }, + { + "marker_token": "CD66B", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD66B", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD66b", + "registry_tokens": [ + "CD66b" + ], + "legacy_axiom_rows": 21, + "enhanced_axiom_rows": 21, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000014", + "SOULCAP:SC000015", + "SOULCAP:SC000016", + "SOULCAP:SC000017", + "SOULCAP:SC000018", + "SOULCAP:SC000019", + "SOULCAP:SC000020", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000059", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000074", + "SOULCAP:SC000075", + "SOULCAP:SC000076", + "SOULCAP:SC000077", + "SOULCAP:SC000078", + "SOULCAP:SC000079", + "SOULCAP:SC000080", + "SOULCAP:SC000081", + "SOULCAP:SC000082", + "SOULCAP:SC000083", + "SOULCAP:SC000084", + "SOULCAP:SC000085", + "SOULCAP:SC000086", + "SOULCAP:SC000087", + "SOULCAP:SC000088", + "SOULCAP:SC000089", + "SOULCAP:SC000090", + "SOULCAP:SC000091", + "SOULCAP:SC000092", + "SOULCAP:SC000093", + "SOULCAP:SC000094", + "SOULCAP:SC000095", + "SOULCAP:SC000096", + "SOULCAP:SC000097", + "SOULCAP:SC000098", + "SOULCAP:SC000099", + "SOULCAP:SC000100", + "SOULCAP:SC000101", + "SOULCAP:SC000102", + "SOULCAP:SC000103", + "SOULCAP:SC000104", + "SOULCAP:SC000105", + "SOULCAP:SC000106", + "SOULCAP:SC000107", + "SOULCAP:SC000108", + "SOULCAP:SC000109", + "SOULCAP:SC000110", + "SOULCAP:SC000111", + "SOULCAP:SC000112", + "SOULCAP:SC000113", + "SOULCAP:SC000114", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000120", + "SOULCAP:SC000121", + "SOULCAP:SC000122", + "SOULCAP:SC000123", + "SOULCAP:SC000124", + "SOULCAP:SC000125", + "SOULCAP:SC000126", + "SOULCAP:SC000127" + ] + }, + { + "marker_token": "CD8", + "representation": "unresolved", + "protein_resolution": "withhold", + "canonical": "CD8", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD8", + "registry_tokens": [ + "CD8" + ], + "legacy_axiom_rows": 318, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 318, + "affected_subjects": [ + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000121" + ] + }, + { + "marker_token": "CXCR3", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD183", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CXCR3", + "registry_tokens": [ + "CXCR3" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 8, + "gained": 8, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000115" + ] + }, + { + "marker_token": "CXCR5", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "CD185", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CXCR5", + "registry_tokens": [ + "CXCR5" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 2, + "gained": 2, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000115" + ] + }, + { + "marker_token": "DELTA", + "representation": "unresolved", + "protein_resolution": "withhold", + "canonical": "DELTA", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.", + "source_ref": "marker_mappings/marker_protein_gene.csv#delta", + "registry_tokens": [ + "delta" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 0, + "affected_subjects": [] + }, + { + "marker_token": "DELTA1", + "representation": "unresolved", + "protein_resolution": "withhold", + "canonical": "DELTA1", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.", + "source_ref": "marker_mappings/marker_protein_gene.csv#delta1", + "registry_tokens": [ + "delta1" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000122", + "SOULCAP:SC000123" + ] + }, + { + "marker_token": "FCER1A", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "FCER1A", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#FceR1a", + "registry_tokens": [ + "FceR1a" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 16, + "gained": 16, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000014", + "SOULCAP:SC000015" + ] + }, + { + "marker_token": "GAMMA", + "representation": "unresolved", + "protein_resolution": "withhold", + "canonical": "GAMMA", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.", + "source_ref": "marker_mappings/marker_protein_gene.csv#gamma", + "registry_tokens": [ + "gamma" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 0, + "affected_subjects": [] + }, + { + "marker_token": "HLA-DR", + "representation": "complex", + "protein_resolution": "withhold", + "canonical": "HLA-DR", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.", + "source_ref": "marker_mappings/marker_protein_gene.csv#HLA-DR", + "registry_tokens": [ + "HLA-DR" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000015", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000059", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000074", + "SOULCAP:SC000075", + "SOULCAP:SC000076", + "SOULCAP:SC000077", + "SOULCAP:SC000078", + "SOULCAP:SC000079", + "SOULCAP:SC000080", + "SOULCAP:SC000081", + "SOULCAP:SC000082", + "SOULCAP:SC000083", + "SOULCAP:SC000084", + "SOULCAP:SC000085", + "SOULCAP:SC000086", + "SOULCAP:SC000087", + "SOULCAP:SC000088", + "SOULCAP:SC000089", + "SOULCAP:SC000090", + "SOULCAP:SC000091", + "SOULCAP:SC000092", + "SOULCAP:SC000093", + "SOULCAP:SC000094", + "SOULCAP:SC000095", + "SOULCAP:SC000096", + "SOULCAP:SC000097", + "SOULCAP:SC000098", + "SOULCAP:SC000099", + "SOULCAP:SC000100", + "SOULCAP:SC000101", + "SOULCAP:SC000102", + "SOULCAP:SC000103", + "SOULCAP:SC000104", + "SOULCAP:SC000105", + "SOULCAP:SC000106", + "SOULCAP:SC000107", + "SOULCAP:SC000108", + "SOULCAP:SC000109", + "SOULCAP:SC000110", + "SOULCAP:SC000111", + "SOULCAP:SC000112", + "SOULCAP:SC000113", + "SOULCAP:SC000114", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000120", + "SOULCAP:SC000121", + "SOULCAP:SC000122", + "SOULCAP:SC000123", + "SOULCAP:SC000124", + "SOULCAP:SC000125", + "SOULCAP:SC000126", + "SOULCAP:SC000127" + ] + }, + { + "marker_token": "IFNG", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "IFNG", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#IFNg", + "registry_tokens": [ + "IFNg" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000116" + ] + }, + { + "marker_token": "IGA", + "representation": "protein_family", + "protein_resolution": "withhold", + "canonical": "IGA", + "rationale": "Registry notes document a non-single-protein or pan-marker representation.", + "source_ref": "marker_mappings/marker_protein_gene.csv#IgA", + "registry_tokens": [ + "IgA" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044" + ] + }, + { + "marker_token": "IGD", + "representation": "protein_family", + "protein_resolution": "withhold", + "canonical": "IGD", + "rationale": "Registry notes document a non-single-protein or pan-marker representation.", + "source_ref": "marker_mappings/marker_protein_gene.csv#IgD", + "registry_tokens": [ + "IgD" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044" + ] + }, + { + "marker_token": "IGE", + "representation": "protein_family", + "protein_resolution": "withhold", + "canonical": "IGE", + "rationale": "Registry notes document a non-single-protein or pan-marker representation.", + "source_ref": "marker_mappings/marker_protein_gene.csv#IgE", + "registry_tokens": [ + "IgE" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000033", + "SOULCAP:SC000036", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044" + ] + }, + { + "marker_token": "IGG", + "representation": "protein_family", + "protein_resolution": "withhold", + "canonical": "IGG", + "rationale": "Registry notes document a non-single-protein or pan-marker representation.", + "source_ref": "marker_mappings/marker_protein_gene.csv#IgG", + "registry_tokens": [ + "IgG" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044" + ] + }, + { + "marker_token": "IGM", + "representation": "protein_family", + "protein_resolution": "withhold", + "canonical": "IGM", + "rationale": "Registry notes document a non-single-protein or pan-marker representation.", + "source_ref": "marker_mappings/marker_protein_gene.csv#IgM", + "registry_tokens": [ + "IgM" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044" + ] + }, + { + "marker_token": "IL-13", + "representation": "single_protein", + "protein_resolution": "allow", + "canonical": "IL-13", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#IL-13", + "registry_tokens": [ + "IL-13" + ], + "legacy_axiom_rows": 0, + "enhanced_axiom_rows": 0, + "gained": 0, + "lost": 0, + "affected_subjects": [ + "SOULCAP:SC000112", + "SOULCAP:SC000116", + "SOULCAP:SC000117" + ] + }, + { + "marker_token": "IL-17A", + "representation": "single_protein", + "protein_resolution": "allow", + 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"pr": "PR:000001006", + "tokens": [ + "CD45" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001017", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD45RO", + "tokens": [ + "CD45RO" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001084", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD8A", + "tokens": [ + "CD8A" + ] + }, + { + "via": "exact_alias", + "source_token": "CD8A", + "tokens": [ + "CD8A" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001869", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD127", + "tokens": [ + "CD127" + ] + }, + { + "via": "exact_alias", + "source_token": "CDW127", + "tokens": [ + "CDW127" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001869", + "tokens": [ + "CD127" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000025402", + "asserted": "False", + "paths": [] + }, + { + "sense": "positive", + "pr": "PR:000025403", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD8A", + "tokens": [ + "CD8A" + ] + } + ] + } + ] + } + }, + { + "subject_id": "SOULCAP:SC000103", + "cl_id": "CL:4030002", + "legacy_status": "no_marker_support", + "enhanced_status": "no_marker_support", + "legacy_evidence": { + "status": "no_marker_support", + "matched": [], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)" + }, + { + "column": "Required exclusion", + "clause": "(CD19:negative OR CD20:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD123:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD16:negative" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "profile_sha256": "9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "" + }, + "enhanced_evidence": { + "status": "no_marker_support", + "matched": [], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)" + }, + { + "column": "Required exclusion", + "clause": "(CD19:negative OR CD20:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD123:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD16:negative" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "9222b43d7123805f910fc3866ccc23838742b15d7126d08ee704d417946754d9", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "", + "resolution_evidence": [] + } + } + ], + "issues": [ + { + "marker": "CD15", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD16", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD1D-A-GALCER", + "reason": "policy_withheld", + "representation": "reagent_gate", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein." + }, + { + "marker": "CD3", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD57", + "reason": "policy_withheld", + "representation": "reagent_gate", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein." + }, + { + "marker": "CD8", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "HLA-DR", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "IGA", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGD", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGE", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGG", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGM", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "MR1", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "TCR", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "TCRVA24-JA18", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "TCRAB", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "TCRGD", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "TETRAMER", + "reason": "policy_withheld", + "representation": "reagent_gate", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein." + }, + { + "marker": "V", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + }, + { + "marker": "DELTA", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + }, + { + "marker": "DELTA1", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + }, + { + "marker": "GAMMA", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + } + ] +} diff --git a/reports/marker_resolution_audit.md b/reports/marker_resolution_audit.md new file mode 100644 index 0000000..ff8cdf1 --- /dev/null +++ b/reports/marker_resolution_audit.md @@ -0,0 +1,98 @@ +# Marker resolution audit + +Same source and axiom snapshots; no lexical expansion. Counts describe computational evidence, not biological accuracy. Source usage comes from valid cells only. + +```json +{ + "normalized_markers": 73, + "registry_rows": 75, + "representations": { + "single_protein": 51, + "unresolved": 9, + "reagent_gate": 3, + "complex": 4, + "protein_family": 6 + }, + "markers_gaining_axioms": 6, + "markers_losing_axioms": 11, + "mapping_status_changes": 0 +} +``` + +| Marker | Policy | Axiom rows before → after | Reason | +|---|---|---:|---| +| CCR4 | single_protein / allow | 0 → 4 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CCR6 | single_protein / allow | 0 → 8 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD10 | single_protein / allow | 20 → 20 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD117 | single_protein / allow | 49 → 44 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD11C | single_protein / allow | 85 → 85 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD123 | single_protein / allow | 31 → 31 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD127 | single_protein / allow | 58 → 53 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD138 | single_protein / allow | 52 → 52 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD14 | single_protein / allow | 108 → 108 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD141 | single_protein / allow | 1 → 1 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD15 | unresolved / withhold | 15 → 0 | Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required. | +| CD16 | unresolved / withhold | 29 → 0 | Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required. | +| CD161 | single_protein / allow | 19 → 2 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD172A | single_protein / allow | 6 → 6 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD183 | single_protein / allow | 8 → 8 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD185 | single_protein / allow | 2 → 2 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD19 | single_protein / allow | 335 → 335 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD193 | single_protein / allow | 16 → 16 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD194 | single_protein / allow | 4 → 4 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD196 | single_protein / allow | 8 → 8 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD198 | single_protein / allow | 0 → 0 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD1C | single_protein / allow | 1 → 1 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD1D-A-GALCER | reagent_gate / withhold | 0 → 0 | Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein. | +| CD20 | single_protein / allow | 284 → 284 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD21 | single_protein / allow | 11 → 11 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD24 | single_protein / allow | 38 → 38 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD25 | single_protein / allow | 41 → 40 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD27 | single_protein / allow | 49 → 49 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD294 | single_protein / allow | 1 → 1 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD3 | unresolved / withhold | 330 → 0 | Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required. | +| CD303 | single_protein / allow | 3 → 3 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD33 | single_protein / allow | 15 → 13 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD34 | single_protein / allow | 135 → 130 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD38 | single_protein / allow | 59 → 59 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD4 | single_protein / allow | 196 → 196 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD45 | single_protein / allow | 92 → 92 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD56 | single_protein / allow | 181 → 177 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD57 | reagent_gate / withhold | 0 → 0 | Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein. | +| CD64 | single_protein / allow | 1 → 1 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD66B | single_protein / allow | 21 → 21 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CD8 | unresolved / withhold | 318 → 0 | Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required. | +| CXCR3 | single_protein / allow | 0 → 8 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| CXCR5 | single_protein / allow | 0 → 2 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| DELTA | unresolved / withhold | 0 → 0 | No PRO identity recorded; possible source artifact or unresolved marker requires clarification. | +| DELTA1 | unresolved / withhold | 0 → 0 | No PRO identity recorded; possible source artifact or unresolved marker requires clarification. | +| FCER1A | single_protein / allow | 0 → 16 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| GAMMA | unresolved / withhold | 0 → 0 | No PRO identity recorded; possible source artifact or unresolved marker requires clarification. | +| HLA-DR | complex / withhold | 0 → 0 | Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence. | +| IFNG | single_protein / allow | 0 → 0 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| IGA | protein_family / withhold | 0 → 0 | Registry notes document a non-single-protein or pan-marker representation. | +| IGD | protein_family / withhold | 0 → 0 | Registry notes document a non-single-protein or pan-marker representation. | +| IGE | protein_family / withhold | 0 → 0 | Registry notes document a non-single-protein or pan-marker representation. | +| IGG | protein_family / withhold | 0 → 0 | Registry notes document a non-single-protein or pan-marker representation. | +| IGM | protein_family / withhold | 0 → 0 | Registry notes document a non-single-protein or pan-marker representation. | +| IL-13 | single_protein / allow | 0 → 0 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| IL-17A | single_protein / allow | 0 → 0 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| IL-4 | single_protein / allow | 0 → 0 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| IL-5 | single_protein / allow | 0 → 0 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| IL-9 | single_protein / allow | 0 → 0 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| MR1 | unresolved / withhold | 0 → 0 | Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required. | +| TCR | protein_family / withhold | 0 → 0 | Registry notes document a non-single-protein or pan-marker representation. | +| TCRAB | complex / withhold | 0 → 0 | Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence. | +| TCRGD | complex / withhold | 0 → 0 | Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence. | +| TCRVA24 | single_protein / allow | 0 → 0 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| TCRVA24-JA18 | complex / withhold | 0 → 0 | Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence. | +| TCRVA7.2 | single_protein / allow | 0 → 1 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| TCRVB11 | single_protein / allow | 0 → 0 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| TCRVD2 | single_protein / allow | 0 → 0 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| TCRVG9 | single_protein / allow | 0 → 0 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| TETRAMER | reagent_gate / withhold | 0 → 0 | Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein. | +| V | unresolved / withhold | 0 → 0 | No PRO identity recorded; possible source artifact or unresolved marker requires clarification. | +| VB11 | single_protein / allow | 0 → 0 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | +| VD1 | single_protein / allow | 0 → 0 | Retains the registry's single PRO representation; computational identity only, not biological sign-off. | + +See JSON for per-mapping evidence, source usage, policy issues, and input hashes. diff --git a/reports/marker_resolution_audit.tsv b/reports/marker_resolution_audit.tsv new file mode 100644 index 0000000..5156155 --- /dev/null +++ b/reports/marker_resolution_audit.tsv @@ -0,0 +1,74 @@ +marker_token representation protein_resolution canonical legacy_axiom_rows enhanced_axiom_rows gained lost rationale source_ref +CCR4 single_protein allow CCR4 0 4 4 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CCR4 +CCR6 single_protein allow CCR6 0 8 8 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CCR6 +CD10 single_protein allow CD10 20 20 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD10 +CD117 single_protein allow CD117 49 44 0 5 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD117 +CD11C single_protein allow CD11C 85 85 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD11c +CD123 single_protein allow CD123 31 31 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD123 +CD127 single_protein allow CD127 58 53 0 5 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD127 +CD138 single_protein allow CD138 52 52 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD138 +CD14 single_protein allow CD14 108 108 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD14 +CD141 single_protein allow CD141 1 1 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD141 +CD15 unresolved withhold CD15 15 0 0 15 Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required. marker_mappings/marker_protein_gene.csv#CD15 +CD16 unresolved withhold CD16 29 0 0 29 Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required. marker_mappings/marker_protein_gene.csv#CD16 +CD161 single_protein allow CD161 19 2 0 17 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD161 +CD172A single_protein allow CD172A 6 6 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD172a +CD183 single_protein allow CD183 8 8 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD183 +CD185 single_protein allow CD185 2 2 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD185 +CD19 single_protein allow CD19 335 335 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD19 +CD193 single_protein allow CD193 16 16 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD193 +CD194 single_protein allow CCR4 4 4 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD194 +CD196 single_protein allow CCR6 8 8 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD196 +CD198 single_protein allow CD198 0 0 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD198 +CD1C single_protein allow CD1C 1 1 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD1c +CD1D-A-GALCER reagent_gate withhold CD1D-A-GALCER 0 0 0 0 Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein. marker_mappings/marker_protein_gene.csv#CD1d-a-GalCer +CD20 single_protein allow CD20 284 284 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD20 +CD21 single_protein allow CD21 11 11 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD21 +CD24 single_protein allow CD24 38 38 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD24 +CD25 single_protein allow CD25 41 40 0 1 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD25 +CD27 single_protein allow CD27 49 49 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD27 +CD294 single_protein allow CD294 1 1 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD294 +CD3 unresolved withhold CD3 330 0 0 330 Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required. marker_mappings/marker_protein_gene.csv#CD3 +CD303 single_protein allow CD303 3 3 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD303 +CD33 single_protein allow CD33 15 13 0 2 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD33 +CD34 single_protein allow CD34 135 130 0 5 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD34 +CD38 single_protein allow CD38 59 59 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD38 +CD4 single_protein allow CD4 196 196 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD4 +CD45 single_protein allow CD45 92 92 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD45 +CD56 single_protein allow CD56 181 177 0 4 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD56 +CD57 reagent_gate withhold CD57 0 0 0 0 Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein. marker_mappings/marker_protein_gene.csv#CD57 +CD64 single_protein allow CD64 1 1 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD64 +CD66B single_protein allow CD66B 21 21 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CD66b +CD8 unresolved withhold CD8 318 0 0 318 Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required. marker_mappings/marker_protein_gene.csv#CD8 +CXCR3 single_protein allow CD183 0 8 8 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CXCR3 +CXCR5 single_protein allow CD185 0 2 2 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#CXCR5 +DELTA unresolved withhold DELTA 0 0 0 0 No PRO identity recorded; possible source artifact or unresolved marker requires clarification. marker_mappings/marker_protein_gene.csv#delta +DELTA1 unresolved withhold DELTA1 0 0 0 0 No PRO identity recorded; possible source artifact or unresolved marker requires clarification. marker_mappings/marker_protein_gene.csv#delta1 +FCER1A single_protein allow FCER1A 0 16 16 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#FceR1a +GAMMA unresolved withhold GAMMA 0 0 0 0 No PRO identity recorded; possible source artifact or unresolved marker requires clarification. marker_mappings/marker_protein_gene.csv#gamma +HLA-DR complex withhold HLA-DR 0 0 0 0 Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence. marker_mappings/marker_protein_gene.csv#HLA-DR +IFNG single_protein allow IFNG 0 0 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#IFNg +IGA protein_family withhold IGA 0 0 0 0 Registry notes document a non-single-protein or pan-marker representation. marker_mappings/marker_protein_gene.csv#IgA +IGD protein_family withhold IGD 0 0 0 0 Registry notes document a non-single-protein or pan-marker representation. marker_mappings/marker_protein_gene.csv#IgD +IGE protein_family withhold IGE 0 0 0 0 Registry notes document a non-single-protein or pan-marker representation. marker_mappings/marker_protein_gene.csv#IgE +IGG protein_family withhold IGG 0 0 0 0 Registry notes document a non-single-protein or pan-marker representation. marker_mappings/marker_protein_gene.csv#IgG +IGM protein_family withhold IGM 0 0 0 0 Registry notes document a non-single-protein or pan-marker representation. marker_mappings/marker_protein_gene.csv#IgM +IL-13 single_protein allow IL-13 0 0 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#IL-13 +IL-17A single_protein allow IL-17A 0 0 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#IL-17a +IL-4 single_protein allow IL-4 0 0 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#IL-4 +IL-5 single_protein allow IL-5 0 0 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#IL-5 +IL-9 single_protein allow IL-9 0 0 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#IL-9 +MR1 unresolved withhold MR1 0 0 0 0 Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required. marker_mappings/marker_protein_gene.csv#MR1 +TCR protein_family withhold TCR 0 0 0 0 Registry notes document a non-single-protein or pan-marker representation. marker_mappings/marker_protein_gene.csv#TCR +TCRAB complex withhold TCRAB 0 0 0 0 Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence. marker_mappings/marker_protein_gene.csv#TCRab +TCRGD complex withhold TCRGD 0 0 0 0 Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence. marker_mappings/marker_protein_gene.csv#TCRgd +TCRVA24 single_protein allow TCRVA24 0 0 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#TCRVa24 +TCRVA24-JA18 complex withhold TCRVA24-JA18 0 0 0 0 Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence. marker_mappings/marker_protein_gene.csv#TCRVa24-Ja18 +TCRVA7.2 single_protein allow TCRVA7.2 0 1 1 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#TCRVa7.2 +TCRVB11 single_protein allow TCRVB11 0 0 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#TCRVb11 +TCRVD2 single_protein allow TCRVD2 0 0 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#TCRVd2 +TCRVG9 single_protein allow TCRVG9 0 0 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#TCRVg9 +TETRAMER reagent_gate withhold TETRAMER 0 0 0 0 Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein. marker_mappings/marker_protein_gene.csv#Tetramer +V unresolved withhold V 0 0 0 0 No PRO identity recorded; possible source artifact or unresolved marker requires clarification. marker_mappings/marker_protein_gene.csv#V +VB11 single_protein allow TCRVB11 0 0 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#VB11 +VD1 single_protein allow VD1 0 0 0 0 Retains the registry's single PRO representation; computational identity only, not biological sign-off. marker_mappings/marker_protein_gene.csv#Vd1 diff --git a/reports/matcher_evaluation.json b/reports/matcher_evaluation.json new file mode 100644 index 0000000..e8ea238 --- /dev/null +++ b/reports/matcher_evaluation.json @@ -0,0 +1,93319 @@ +{ + "schema_version": 1, + "generated_utc": "2026-09-11T04:13:49.655515+00:00", + "inputs": { + "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44", + "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8", + "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e", + "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c", + "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706", + "marker_policy": "317578b4b7fb1a9837b9a61fa85c2dc1ea6469eab4404b0435476ba4a12a1f84", + "marker_map": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7" + }, + "benchmark_path": "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\matcher_benchmark.tsv", + "matcher": { + "version": "0.1.0", + "source_hashes": { + "cl_match.py": "4d447e860e8c500196b2859549b91dac9549afeaee236eedd5d63049ca7f7cec", + "phenotype.py": "6d3e7e59b884365fa48596fe1365b8630053b70a6259bb0e8f42413a55a9514a", + "marker_syntax.py": "e40620b1d804eec3c1f05251716092abd7f5a273e11ba91ce61a3345b1872ade", + "registry.py": "a225ca650e0278378566bf7134b3d8daa33dabee0c61c3d479d8affddf7a25fd", + "evaluation.py": "69dd3abd6c1bbf5a5ae453428269179a5cca8b991c1338bb51097dadf06555c5", + "audit.py": "4d2bfeff9583efd80c37d8fef51e06abb887410f4b9d88ce9b68bceace8bc9bb", + "candidate_index.py": "d4c58041cb4c4a4033d1457ae9f04d2e4d814a2d80469dd7aced2e696539e9a6", + "marker_resolution.py": "17feb8779da5a3d429c9d8326d26195cb66bb25cebf9cd005c79410d99efe050" + } + }, + "config": { + "ks": [ + 1, + 3, + 5 + ], + "ranking": "production order, including disqualified candidates", + "ties": "primary metrics use production order; bounds report tie sensitivity", + "denominator": "all cohort cases, including unscorable profiles and absent targets", + "marker_resolution": true, + "resolution_policy": "explicit_v1", + "local_lexical": false, + "lexical_limit": 20, + "lexical_min_jaccard": 0.5 + }, + "candidate_count": 826, + "marker_resolution_issues": [ + { + "marker": "CD15", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD16", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD1D-A-GALCER", + "reason": "policy_withheld", + "representation": "reagent_gate", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein." + }, + { + "marker": "CD3", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD57", + "reason": "policy_withheld", + "representation": "reagent_gate", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein." + }, + { + "marker": "CD8", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "HLA-DR", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "IGA", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGD", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGE", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGG", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGM", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "MR1", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "TCR", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "TCRVA24-JA18", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "TCRAB", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "TCRGD", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "TETRAMER", + "reason": "policy_withheld", + "representation": "reagent_gate", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein." + }, + { + "marker": "V", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + }, + { + "marker": "DELTA", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + }, + { + "marker": "DELTA1", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + }, + { + "marker": "GAMMA", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + } + ], + "cases": [ + { + "case_id": "provisional/SOULCAP:SC000001/Exact", + "cohort": "provisional", + "subject_id": "SOULCAP:SC000001", + "match_type": "Exact", + "targets": [ + "CL:0000623" + ], + "evidence_reference": "mappings/curated_mappings.tsv", + "uncertain": false, + "rank": 6, + "rank_best": 6, + "rank_worst": 32, + "missing_targets": [], + "candidates": [ + { + "cl_id": "CL:0002338", + "label": "CD56-positive, CD161-positive immature natural killer cell, human", + "score": 19, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD34-", + "CD19-", + "CD56+ (1 of 2 alt.)" + ], + "gaps": [ + "CD3-", + "CD45+", + "CD127-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD123-", + "CD33-/CD64- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 3, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [ + { + "sense": "negative", + "pr": "PR:000001002", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001003", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD34", + "tokens": [ + "CD34" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001003", + "tokens": [ + "CD34" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001289", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD20", + "tokens": [ + "CD20" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001289", + "tokens": [ + "CD20" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001889", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD14", + "tokens": [ + "CD14" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001889", + "tokens": [ + "CD14" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001024", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001381", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD122", + "tokens": [ + "CD122" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001874", + "asserted": "True", + "paths": [] + }, + { + "sense": "positive", + "pr": "PR:000002065", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD117", + "tokens": [ + "CD117" + ] + }, + { + "via": "pro_id", + "pr": "PR:000002065", + "tokens": [ + "CD117" + ] + } + ] + } + ] + }, + { + "cl_id": "CL:0000938", + "label": "CD16-negative, CD56-bright natural killer cell, human", + "score": 15, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19-", + "CD56+ (hi) (1 of 2 alt.)" + ], + "gaps": [ + "CD34-", + "CD3-", + "CD45+", + "CD127-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD123-", + "CD33-/CD64- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 3, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [ + { + "sense": "high", + "pr": "PR:000001024", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001002", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001289", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD20", + "tokens": [ + "CD20" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001289", + "tokens": [ + "CD20" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001483", + "asserted": "True", + "paths": [] + }, + { + "sense": "negative", + "pr": "PR:000001889", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD14", + "tokens": [ + "CD14" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001889", + "tokens": [ + "CD14" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000002015", + "asserted": "True", + "paths": [] + }, + { + "sense": "positive", + "pr": "PR:000001319", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD84", + "tokens": [ + "CD84" + ] + } + ] + } + ] + }, + { + "cl_id": "CL:0000939", + "label": "CD16-positive, CD56-dim natural killer cell, human", + "score": 15, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19-", + "CD56+ (dim) (1 of 2 alt.)" + ], + "gaps": [ + "CD34-", + "CD3-", + "CD45+", + "CD127-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD123-", + "CD33-/CD64- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 3, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [ + { + "sense": "low", + "pr": "PR:000001024", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001002", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001289", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD20", + "tokens": [ + "CD20" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001289", + "tokens": [ + "CD20" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001889", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD14", + "tokens": [ + "CD14" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001889", + "tokens": [ + "CD14" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000002015", + "asserted": "True", + "paths": [] + }, + { + "sense": "positive", + "pr": "PR:000001483", + "asserted": "True", + "paths": [] + } + ] + }, + { + "cl_id": "CL:0002343", + "label": "decidual natural killer cell, human", + "score": 15, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19-", + "CD56+ (hi) (1 of 2 alt.)" + ], + "gaps": [ + "CD34-", + "CD3-", + "CD45+", + "CD127-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD123-", + 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"change": "unchanged", + "before_rank": 1, + "after_rank": 1, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000017/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000018/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000019/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000020/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000021/Exact", + "change": "regressed", + "before_rank": 9, + "after_rank": 10, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000022/Exact", + "change": "unchanged", + "before_rank": 4, + "after_rank": 4, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000023/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000024/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000025/Exact", + "change": "unchanged", + "before_rank": 3, + "after_rank": 3, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000026/Exact", + "change": "improved", + "before_rank": 31, + "after_rank": 6, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000028/Broad", + "change": "unchanged", + "before_rank": 1, + "after_rank": 1, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000029/Exact", + "change": "regressed", + "before_rank": 43, + "after_rank": 48, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000030/Exact", + "change": "unchanged", + "before_rank": 20, + "after_rank": 20, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000031/Exact", + "change": "unchanged", + "before_rank": 5, + "after_rank": 5, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000032/Exact", + "change": "unchanged", + "before_rank": 5, + "after_rank": 5, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000033/Broad", + "change": "unchanged", + "before_rank": 12, + "after_rank": 12, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000034/Broad", + "change": "unchanged", + "before_rank": 4, + "after_rank": 4, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000035/Broad", + "change": "unchanged", + "before_rank": 5, + "after_rank": 5, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000036/Broad", + "change": "unchanged", + "before_rank": 12, + "after_rank": 12, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000037/Exact", + "change": "unchanged", + "before_rank": 39, + "after_rank": 39, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000039/Exact", + "change": "unchanged", + "before_rank": 13, + "after_rank": 13, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000040/Exact", + "change": "unchanged", + "before_rank": 33, + "after_rank": 33, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000041/Exact", + "change": "unchanged", + "before_rank": 14, + "after_rank": 14, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000042/Exact", + "change": "unchanged", + "before_rank": 18, + "after_rank": 18, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000043/Exact", + "change": "unchanged", + "before_rank": 18, + "after_rank": 18, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000044/Exact", + "change": "unchanged", + "before_rank": 17, + "after_rank": 17, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000045/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000046/Broad", + "change": "regressed", + "before_rank": 34, + "after_rank": 87, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000047/Broad", + "change": "regressed", + "before_rank": 42, + "after_rank": 127, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000048/Broad", + "change": "regressed", + "before_rank": 63, + "after_rank": 119, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000049/Broad", + "change": "regressed", + "before_rank": 34, + "after_rank": 87, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000050/Broad", + "change": "regressed", + "before_rank": 70, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000051/Broad", + "change": "regressed", + "before_rank": 63, + "after_rank": 114, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000052/Broad", + "change": "regressed", + "before_rank": 42, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000053/Broad", + "change": "regressed", + "before_rank": 54, + "after_rank": 115, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000054/Broad", + "change": "regressed", + "before_rank": 34, + "after_rank": 87, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000055/Broad", + "change": "regressed", + "before_rank": 70, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000056/Broad", + "change": "regressed", + "before_rank": 63, + "after_rank": 114, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000057/Broad", + "change": "regressed", + "before_rank": 42, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000058/Broad", + "change": "regressed", + "before_rank": 54, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000059/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000060/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000061/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000062/Broad", + "change": "regressed", + "before_rank": 9, + "after_rank": 70, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000063/Broad", + "change": "regressed", + "before_rank": 4, + "after_rank": 125, + "before_status": "hit_at_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000064/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000065/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000066/Exact", + "change": "regressed", + "before_rank": 9, + "after_rank": 69, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000067/Exact", + "change": "regressed", + "before_rank": 4, + "after_rank": 124, + "before_status": "hit_at_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000068/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000069/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000070/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000071/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000072/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000073/Exact", + "change": "regressed", + "before_rank": 1, + "after_rank": 117, + "before_status": "hit_at_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000074/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000082/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000085/Exact", + "change": "regressed", + "before_rank": 239, + "after_rank": 247, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000087/Exact", + "change": "improved", + "before_rank": 252, + "after_rank": 249, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000089/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000092/Exact", + "change": "improved", + "before_rank": 253, + "after_rank": 250, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000096/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000099/Exact", + "change": "regressed", + "before_rank": 239, + "after_rank": 247, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000103/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + } + ] + } +} diff --git a/reports/matcher_evaluation.md b/reports/matcher_evaluation.md new file mode 100644 index 0000000..0d334b3 --- /dev/null +++ b/reports/matcher_evaluation.md @@ -0,0 +1,852 @@ +# Matcher evaluation + +Target retrieval only; provisional agreement is not validated accuracy. +All cohort cases remain in denominators, including invalid profiles and absent targets. +Primary ranks retain production tie ordering and disqualified candidates. Bounds show tie sensitivity. + +## Metrics + +```json +{ + "reviewed": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional": { + "cases": 80, + "mrr": 0.10812960188222673, + "statuses": { + "below_top_5": 45, + "hit_at_5": 16, + "invalid_profile": 6, + "target_not_in_index": 13 + }, + "cases_with_missing_targets": 15, + "top1_disqualified": 0, + "hit_at_1": 0.0375, + "hit_at_1_optimistic": 0.075, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.1375, + "hit_at_3_optimistic": 0.15, + "hit_at_3_pessimistic": 0.05, + "hit_at_5": 0.2, + "hit_at_5_optimistic": 0.2, + "hit_at_5_pessimistic": 0.0875 + } +} +``` + +## Relation breakdown + +```json +{ + "reviewed/Exact": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Broad": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Exact": { + "cases": 50, + "mrr": 0.11785498910845602, + "statuses": { + "below_top_5": 28, + "hit_at_5": 10, + "invalid_profile": 6, + "target_not_in_index": 6 + }, + "cases_with_missing_targets": 8, + "top1_disqualified": 0, + "hit_at_1": 0.04, + "hit_at_1_optimistic": 0.1, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.14, + "hit_at_3_optimistic": 0.16, + "hit_at_3_pessimistic": 0.06, + "hit_at_5": 0.2, + "hit_at_5_optimistic": 0.2, + "hit_at_5_pessimistic": 0.08 + }, + "provisional/Broad": { + "cases": 30, + "mrr": 0.09192062317184475, + "statuses": { + "hit_at_5": 6, + "below_top_5": 17, + "target_not_in_index": 7 + }, + "cases_with_missing_targets": 7, + "top1_disqualified": 0, + "hit_at_1": 0.03333333333333333, + "hit_at_1_optimistic": 0.03333333333333333, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.13333333333333333, + "hit_at_3_optimistic": 0.13333333333333333, + "hit_at_3_pessimistic": 0.03333333333333333, + "hit_at_5": 0.2, + "hit_at_5_optimistic": 0.2, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + } +} +``` + +## Baseline comparison + +Input/config changes make comparisons non-equivalent. + +```json +{ + "comparable": false, + "differences": [ + "inputs", + "config" + ], + "matcher_changed": false, + "changes": [ + { + "case_id": "provisional/SOULCAP:SC000001/Exact", + "change": "unchanged", + "before_rank": 6, + "after_rank": 6, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000002/Exact", + "change": "unchanged", + "before_rank": 1, + "after_rank": 1, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000003/Exact", + "change": "regressed", + "before_rank": 1, + "after_rank": 3, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000004/Broad", + "change": "regressed", + "before_rank": 1, + "after_rank": 3, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000005/Broad", + "change": "regressed", + "before_rank": 1, + "after_rank": 3, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000006/Broad", + "change": "unchanged", + "before_rank": 3, + "after_rank": 3, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000007/Exact", + "change": "regressed", + "before_rank": 155, + "after_rank": 162, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000008/Exact", + "change": "regressed", + "before_rank": 161, + "after_rank": 171, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000009/Exact", + "change": "improved", + "before_rank": 26, + "after_rank": 25, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000010/Exact", + "change": "unchanged", + "before_rank": 118, + "after_rank": 118, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000011/Exact", + "change": "regressed", + "before_rank": 18, + "after_rank": 20, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000012/Exact", + "change": "unchanged", + "before_rank": 2, + "after_rank": 2, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000013/Exact", + "change": "unchanged", + "before_rank": 2, + "after_rank": 2, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000014/Exact", + "change": "regressed", + "before_rank": 34, + "after_rank": 36, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000015/Exact", + "change": "improved", + "before_rank": 3, + "after_rank": 2, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000016/Exact", + "change": "unchanged", + "before_rank": 1, + "after_rank": 1, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000017/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000018/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000019/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000020/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000021/Exact", + "change": "regressed", + "before_rank": 9, + "after_rank": 10, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000022/Exact", + "change": "unchanged", + "before_rank": 4, + "after_rank": 4, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000023/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000024/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000025/Exact", + "change": "unchanged", + "before_rank": 3, + "after_rank": 3, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000026/Exact", + "change": "improved", + "before_rank": 31, + "after_rank": 6, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000028/Broad", + "change": "unchanged", + "before_rank": 1, + "after_rank": 1, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000029/Exact", + "change": "regressed", + "before_rank": 43, + "after_rank": 48, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000030/Exact", + "change": "unchanged", + "before_rank": 20, + "after_rank": 20, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000031/Exact", + "change": "unchanged", + "before_rank": 5, + "after_rank": 5, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000032/Exact", + "change": "unchanged", + "before_rank": 5, + "after_rank": 5, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000033/Broad", + "change": "unchanged", + "before_rank": 12, + "after_rank": 12, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000034/Broad", + "change": "unchanged", + "before_rank": 4, + "after_rank": 4, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000035/Broad", + "change": "unchanged", + "before_rank": 5, + "after_rank": 5, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000036/Broad", + "change": "unchanged", + "before_rank": 12, + "after_rank": 12, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000037/Exact", + "change": "unchanged", + "before_rank": 39, + "after_rank": 39, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000039/Exact", + "change": "unchanged", + "before_rank": 13, + "after_rank": 13, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000040/Exact", + "change": "unchanged", + "before_rank": 33, + "after_rank": 33, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000041/Exact", + "change": "unchanged", + "before_rank": 14, + "after_rank": 14, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000042/Exact", + "change": "unchanged", + "before_rank": 18, + "after_rank": 18, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000043/Exact", + "change": "unchanged", + "before_rank": 18, + "after_rank": 18, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000044/Exact", + "change": "unchanged", + "before_rank": 17, + "after_rank": 17, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000045/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000046/Broad", + "change": "regressed", + "before_rank": 34, + "after_rank": 87, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000047/Broad", + "change": "regressed", + "before_rank": 42, + "after_rank": 127, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000048/Broad", + "change": "regressed", + "before_rank": 63, + "after_rank": 119, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000049/Broad", + "change": "regressed", + "before_rank": 34, + "after_rank": 87, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000050/Broad", + "change": "regressed", + "before_rank": 70, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000051/Broad", + "change": "regressed", + "before_rank": 63, + "after_rank": 114, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000052/Broad", + "change": "regressed", + "before_rank": 42, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000053/Broad", + "change": "regressed", + "before_rank": 54, + "after_rank": 115, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000054/Broad", + "change": "regressed", + "before_rank": 34, + "after_rank": 87, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000055/Broad", + "change": "regressed", + "before_rank": 70, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000056/Broad", + "change": "regressed", + "before_rank": 63, + "after_rank": 114, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000057/Broad", + "change": "regressed", + "before_rank": 42, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000058/Broad", + "change": "regressed", + "before_rank": 54, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000059/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000060/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000061/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000062/Broad", + "change": "regressed", + "before_rank": 9, + "after_rank": 70, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000063/Broad", + "change": "regressed", + "before_rank": 4, + "after_rank": 125, + "before_status": "hit_at_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000064/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000065/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000066/Exact", + "change": "regressed", + "before_rank": 9, + "after_rank": 69, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000067/Exact", + "change": "regressed", + "before_rank": 4, + "after_rank": 124, + "before_status": "hit_at_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000068/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000069/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000070/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000071/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000072/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000073/Exact", + "change": "regressed", + "before_rank": 1, + "after_rank": 117, + "before_status": "hit_at_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000074/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000082/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000085/Exact", + "change": "regressed", + "before_rank": 239, + "after_rank": 247, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000087/Exact", + "change": "improved", + "before_rank": 252, + "after_rank": 249, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000089/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000092/Exact", + "change": "improved", + "before_rank": 253, + "after_rank": 250, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000096/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000099/Exact", + "change": "regressed", + "before_rank": 239, + "after_rank": 247, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000103/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + } + ] +} +``` + +See matcher_evaluation.tsv for per-case failures and matcher_evaluation.json for full evidence and provenance. diff --git a/reports/matcher_evaluation.tsv b/reports/matcher_evaluation.tsv new file mode 100644 index 0000000..372df40 --- /dev/null +++ b/reports/matcher_evaluation.tsv @@ -0,0 +1,81 @@ +case_id cohort subject_id match_type targets status rank rank_best rank_worst missing_targets note candidates target_results +provisional/SOULCAP:SC000001/Exact provisional SOULCAP:SC000001 Exact "[""CL:0000623""]" below_top_5 6 6 32 [] "[{""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD3-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": 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""positive"", ""pr"": ""PR:P10721"", ""asserted"": ""False"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:P13591"", ""asserted"": ""True"", ""paths"": []}]}]" "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD3-"", ""CD45+"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""low"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": 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provisional SOULCAP:SC000005 Broad "[""CL:0000939""]" hit_at_5 3 2 4 [] "[{""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD3-"", ""CD45+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": 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""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001935"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD138"", ""tokens"": [""CD138""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001935"", ""tokens"": [""CD138""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001963"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD27"", ""tokens"": [""CD27""]}, {""via"": ""exact_alias"", ""source_token"": ""CD27L"", ""tokens"": [""CD27L""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001963"", ""tokens"": [""CD27""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}], ""rank"": 4, ""rank_best"": 4, ""rank_worst"": 6}]" +provisional/SOULCAP:SC000035/Broad provisional SOULCAP:SC000035 Broad "[""CL:0000981""]" hit_at_5 5 5 12 [] "[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 16, ""matched"": [""CD20+ (1 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""positive"", ""pr"": ""PR:000001945"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD71"", ""tokens"": [""CD71""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]}, {""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD45+""], ""gaps"": [""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000009143"", 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"contradictions": [], + "hint_bonus": 1, + "disqualified": false + }, + { + "cl_id": "CL:0002000", + "label": "Kit-positive erythroid progenitor cell", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false + }, + { + "cl_id": "CL:0000938", + "label": "CD16-negative, CD56-bright natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false + }, + { + "cl_id": "CL:0001024", + "label": "CD34-positive, CD38-negative hematopoietic stem cell", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false + }, + { + "cl_id": "CL:0002343", + "label": "decidual natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false + } + ], + "target_results": [ + { + "cl_id": "CL:0000900", + "label": "naive thymus-derived CD8-positive, alpha-beta T cell", + "score": 2, + "matched": [], + "gaps": [ + "CD14-/CD33-/CD64- (no axiom on any alt.)", + "CD19-/CD20- (no axiom on any alt.)", + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 2, + "disqualified": false, + "rank": 253, + "rank_best": 242, + "rank_worst": 258 + } + ], + "status": "below_top_5", + "note": "" + }, + { + "case_id": "provisional/SOULCAP:SC000096/Exact", + "cohort": "provisional", + "subject_id": "SOULCAP:SC000096", + "match_type": "Exact", + "targets": [ + "CL:0000905" + ], + "evidence_reference": "mappings/curated_mappings.tsv", + "uncertain": false, + "rank": 238, + "rank_best": 238, + "rank_worst": 247, + "missing_targets": [], + "candidates": [ + { + "cl_id": "CL:0001057", + "label": "myeloid dendritic cell, human", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false + }, + { + "cl_id": "CL:0002000", + "label": "Kit-positive erythroid progenitor cell", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false + }, + { + "cl_id": "CL:0001024", + "label": "CD34-positive, CD38-negative hematopoietic stem cell", + "score": 12, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 2, + "disqualified": false + }, + { + "cl_id": "CL:0000938", + "label": "CD16-negative, CD56-bright natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false + }, + { + "cl_id": "CL:0002343", + "label": "decidual natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false + } + ], + "target_results": [ + { + "cl_id": "CL:0000905", + "label": "effector memory CD4-positive, alpha-beta T cell", + "score": 3, + "matched": [], + "gaps": [ + "CD14-/CD33-/CD64- (no axiom on any alt.)", + "CD19-/CD20- (no axiom on any alt.)", + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 3, + "disqualified": false, + "rank": 238, + "rank_best": 238, + "rank_worst": 247 + } + ], + "status": "below_top_5", + "note": "" + }, + { + "case_id": "provisional/SOULCAP:SC000099/Exact", + "cohort": "provisional", + "subject_id": "SOULCAP:SC000099", + "match_type": "Exact", + "targets": [ + "CL:0000913" + ], + "evidence_reference": "mappings/curated_mappings.tsv", + "uncertain": false, + "rank": 239, + "rank_best": 238, + "rank_worst": 247, + "missing_targets": [], + "candidates": [ + { + "cl_id": "CL:0001057", + "label": "myeloid dendritic cell, human", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false + }, + { + "cl_id": "CL:0002000", + "label": "Kit-positive erythroid progenitor cell", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false + }, + { + "cl_id": "CL:0001024", + "label": "CD34-positive, CD38-negative hematopoietic stem cell", + "score": 12, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 2, + "disqualified": false + }, + { + "cl_id": "CL:0000938", + "label": "CD16-negative, CD56-bright natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false + }, + { + "cl_id": "CL:0002343", + "label": "decidual natural 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"match_type": "Exact", + "targets": [ + "CL:4030002" + ], + "evidence_reference": "mappings/curated_mappings.tsv", + "uncertain": false, + "rank": null, + "rank_best": null, + "rank_worst": null, + "missing_targets": [ + "CL:4030002" + ], + "candidates": [ + { + "cl_id": "CL:0001057", + "label": "myeloid dendritic cell, human", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false + }, + { + "cl_id": "CL:0002000", + "label": "Kit-positive erythroid progenitor cell", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false + }, + { + "cl_id": "CL:0000938", + "label": "CD16-negative, CD56-bright natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false + }, + { + "cl_id": "CL:0001024", + "label": "CD34-positive, CD38-negative hematopoietic stem cell", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false + }, + { + "cl_id": "CL:0002343", + "label": "decidual natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false + } + ], + "target_results": [], + "status": "target_not_in_index", + "note": "" + } + ], + "metrics": { + "reviewed": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional": { + "cases": 80, + "mrr": 0.1524095320342756, + "statuses": { + "below_top_5": 42, + "hit_at_5": 19, + "invalid_profile": 6, + "target_not_in_index": 13 + }, + "cases_with_missing_targets": 15, + "top1_disqualified": 0, + "hit_at_1": 0.0875, + "hit_at_1_optimistic": 0.125, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.15, + "hit_at_3_optimistic": 0.2, + "hit_at_3_pessimistic": 0.0875, + "hit_at_5": 0.2375, + "hit_at_5_optimistic": 0.275, + "hit_at_5_pessimistic": 0.1 + } + }, + "by_relation": { + "reviewed/Exact": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Broad": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Narrow": { + "cases": 0, + 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"hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + } + } +} diff --git a/reports/proposed_marker_fixes.xlsx b/reports/proposed_marker_fixes.xlsx index 4d6dc52..b5fa161 100644 Binary files a/reports/proposed_marker_fixes.xlsx and b/reports/proposed_marker_fixes.xlsx differ diff --git a/reports/regression-followup/README.md b/reports/regression-followup/README.md new file mode 100644 index 0000000..0e94396 --- /dev/null +++ b/reports/regression-followup/README.md @@ -0,0 +1,158 @@ +# Regression follow-up: steps 3–6 + +Evidence review and controlled correction, 2026-09-18. This is an automated +source review, not human curator sign-off. No source-sheet values, marker +identifiers, mapping decisions, or default matcher mode were changed. + +## Step 3: decisive evidence + +The frozen ontology distinguishes the whole CD8 coreceptor (`PR:000025402`) +from its alpha chain (`PR:000001084`), and CD3 epsilon (`PR:000001020`) from +the whole CD3 complex. In `reports/cl_pro_relationships.tsv`, CL:0000625 +directly asserts a **surface part** relation to the whole CD8 coreceptor. +The strict resolver discarded this alongside component assertions. These +are different cases: retaining the former requires no component-to-complex +identity inference. + +The source snapshot also contains an alpha-chain negative assertion for +CL:0000803 and inherited CD3-epsilon/CD8-alpha negative assertions for +CL:0002000. They remain withheld for generic CD3/CD8 matching. The source +profiles do not identify antibody clones or otherwise establish a uniform +component-based assay interpretation. This change therefore does not restore +all legacy contradictions or resolve all implausible competitor rankings. + +For assay context, [OMIP-060, Figure 1A and Tables 1–2](https://doi.org/10.1002/cyto.a.23853) +describes a human PBMC panel separating gamma/delta T cells from conventional +T cells before CD4/CD8 subdivision. This supports the plausibility of the +operational gate used by SC000067, but does not establish equivalence of every +SOULCAP gate to a CL class or justify a universal protein-identity rule. + +Local ontology review used `C:/Users/s28al/.data/oaklib/cl.db` opened read-only. +Selected predicates were `rdfs:label`, `IAO:0000115`, and `rdfs:subClassOf` for +CL:0000625, CL:0000803, CL:0000798, PR:000025402, PR:000001084, PR:000001020. +The database SHA-256 is +`2154a6090e1c84c702a86d49c50d3b2610bc2a352175dd04c81e8afd4941b7f6`. +It is not bundled with this report; obtaining that same database is necessary +to replay the definition queries. The repository's extracted axiom snapshot +is sufficient to reproduce the matcher evaluation and tests. + +## Expected mapping review + +Step 4 covers the three lost top-five cases, not biological adjudication of +all 80 proposals. The [machine-readable review](mapping_review.tsv) records +each conclusion and remaining question. + +| Entity | Existing proposal | Evidence-review conclusion | +|---|---|---| +| SC000063 | CL:0000625, Broad | Source label includes alpha/beta **and** gamma/delta cells, while target requires alpha-beta lineage. The proposed broader-target relation is not supported as written. | +| SC000067 | CL:0000625, Exact | Reasonable retrieval candidate; assay OR gate and exclusions still need equivalence review. | +| SC000073 | CL:0000803, Exact | Target is intraepithelial; source has no tissue context. Exact equivalence is not established. | + +The repo defines Broad as CL broader than SOULCAP. Do not simply flip SC000063 +to Narrow: the additional phenotype exclusions and intended population must +also be checked. CL:0000798 is a non-tissue-specific gamma-delta term worth +reviewing for SC000073, not an automatically accepted replacement. Absence of +tissue information means missing evidence, not proof of a different tissue. +All three proposals remain provisional and are excluded from reviewed truth. + +## Scoped correction + +Step 5 implements `whole_cd8_surface_positive_v1` in `marker_resolution.py`: + +- Require token `CD8` explicitly labelled `label` or `exact` on the axiom. +- Require exactly `PR:000025402`, `RO:0002104`, and positive sense. +- Retain only `CD8`; do not propagate this exception through aliases. +- Preserve direct versus inferred assertion provenance and expose rule ID, + source reference, and `marker_assertion_not_molecular_equivalence` in evidence. +- Keep registry protein resolution withheld; no CD8-alpha or CD3-epsilon + identities, generic has-part assertions, negative signs, expression levels, + related synonyms, or ambiguous aliases are newly accepted. + +This evidence-scoped rule applies to 39 axiom rows/39 CL terms in this snapshot. +It is code-versioned; the evaluator already hashes `marker_resolution.py` and +`cl_match.py`, so the correction changes the recorded matcher fingerprint. +It only affects the existing opt-in marker-policy mode. + +### Controlled evaluation + +Same 80 provisional cases, input hashes, candidate order, and 826-term pool; +local lexical expansion disabled. The strict-before report is preserved in +`../resolver-refinement/enhanced/`. The comparison confirms unchanged input +and configuration fingerprints and flags the changed matcher source. + +| Metric | Legacy | Strict before | Corrected strict | +|---|---:|---:|---:| +| Top-1 agreement | 7/80 | 3/80 | 3/80 | +| Top-3 agreement | 12/80 | 11/80 | 11/80 | +| Top-5 agreement | 19/80 | 16/80 | 16/80 | +| MRR | 0.152410 | 0.108130 | 0.108392 | + +Relative to strict-before, five target ranks improve, six worsen, and 69 +remain unchanged (including cases without ranks). No top-five boundary changes. +SC000063 moves 125 → 60; SC000067 124 → 60; SC000073 117 → 114 due to changes +elsewhere in candidate ordering, not restored negative CD8 evidence. Corrected +tie bounds are 59–139 for the first two and 114–120 for the third. These are +**provisional retrieval metrics, not biological accuracy**, and the small MRR +change is not evidence of general improvement. Legacy mode remains the default. + +- [Corrected evaluation](corrected/matcher_evaluation.md) +- [Fresh legacy control](legacy/matcher_evaluation.md) +- [Archived strict-before evaluation](../resolver-refinement/enhanced/matcher_evaluation.md) +- [Earlier eight-way regression triage](../regression-triage/README.md) + +Reproduce without overwriting historical reports: + +```powershell +uv run soulcap-evaluate --out-dir reports/regression-followup/legacy +uv run soulcap-evaluate --marker-map marker_mappings/marker_protein_gene.csv --out-dir reports/regression-followup/corrected --baseline reports/resolver-refinement/enhanced/matcher_evaluation.json +``` + +## Step 6: benchmark preparation and remaining review + +Added five evidence-reviewed **resolver constraint examples** in +`mappings/marker_assertion_benchmark.json`; pytest executes them alongside +negative-scope and provenance tests. They are development regression tests, +not independent validation and not reviewed cell-type equivalences. +The existing `mappings/matcher_benchmark.tsv` intentionally remains empty: +no unconfirmed mapping was promoted to gold standard. + +`mappings/benchmark_reserve.json` freezes five unlabelled entities from five +distinct profile groups. Selection uses a documented SHA-256 seed and no +candidate rankings. Entities with proposals, identical development profiles, +and empty profiles are excluded; groups are kept intact. Tests guard the +partition, input hashes, and absence of overlap with development benchmarks. +This is a **prospective reserve**, not a validated or historically blind +holdout: earlier repository-wide exposure is unknown, and profile hashes do +not rule out semantic similarity or cell-family overlap. + +Before reporting held-out performance: + +1. A domain curator resolves the three review questions above and records + accepted relation, supporting sources, reviewer identity, and date. +2. Freeze the matcher/configuration; have independent annotators label the + reserve without candidate rankings, checking lineage, tissue, specimen, + ontology version, and both directions of the proposed relation. +3. Adjudicate disagreements, preserving unsupported/no-match decisions rather + than forcing a target. Do not merge reserve labels into development data. +4. Evaluate in an isolated input snapshot: the current evaluator automatically + includes development proposals. Keep held-out metrics separate and exclude + reserve cases from subsequent tuning; otherwise designate a new reserve. + +Thus steps 3–5 and the preparation portion of step 6 are complete. Human +adjudication and genuine held-out validation remain outstanding; no validated +accuracy or human-reviewed mappings are claimed. + +Verification: 537 tests passed (96.53% coverage); Ruff lint passed; mypy +reported no issues across 24 source files. Four dependency deprecation +warnings remain; no test failures. + +### Frozen repository inputs + +| Input | SHA-256 | +|---|---| +| Source profiles | `29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44` | +| Entity registry | `b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8` | +| Mapping proposals | `2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e` | +| CL axiom extract | `293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c` | +| Marker registry | `4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7` | +| Marker policy | `317578b4b7fb1a9837b9a61fa85c2dc1ea6469eab4404b0435476ba4a12a1f84` | diff --git a/reports/regression-followup/corrected/matcher_evaluation.json b/reports/regression-followup/corrected/matcher_evaluation.json new file mode 100644 index 0000000..13cbca9 --- /dev/null +++ b/reports/regression-followup/corrected/matcher_evaluation.json @@ -0,0 +1,97822 @@ +{ + "schema_version": 1, + "generated_utc": "2026-09-18T21:08:23.198343+00:00", + "inputs": { + "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44", + "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8", + "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e", + "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c", + "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706", + "marker_policy": "317578b4b7fb1a9837b9a61fa85c2dc1ea6469eab4404b0435476ba4a12a1f84", + "marker_map": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7" + }, + "benchmark_path": "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\matcher_benchmark.tsv", + "matcher": { + "version": "0.1.0", + "source_hashes": { + "cl_match.py": "c810b988a7915b6bc2bf8ae3fa58a55986586d8c0b6734f6a84d9c3d7b4d1f73", + "phenotype.py": "6d3e7e59b884365fa48596fe1365b8630053b70a6259bb0e8f42413a55a9514a", + "marker_syntax.py": "e40620b1d804eec3c1f05251716092abd7f5a273e11ba91ce61a3345b1872ade", + "registry.py": "a225ca650e0278378566bf7134b3d8daa33dabee0c61c3d479d8affddf7a25fd", + "evaluation.py": "69dd3abd6c1bbf5a5ae453428269179a5cca8b991c1338bb51097dadf06555c5", + "audit.py": "4d2bfeff9583efd80c37d8fef51e06abb887410f4b9d88ce9b68bceace8bc9bb", + "candidate_index.py": "d4c58041cb4c4a4033d1457ae9f04d2e4d814a2d80469dd7aced2e696539e9a6", + "marker_resolution.py": "2a8245a656ca8d3e77c678b6d3adb3975ff6081de5586979a9a78283134ba7af" + } + }, + "config": { + "ks": [ + 1, + 3, + 5 + ], + "ranking": "production order, including disqualified candidates", + "ties": "primary metrics use production order; bounds report tie sensitivity", + "denominator": "all cohort cases, including unscorable profiles and absent targets", + "marker_resolution": true, + "resolution_policy": "explicit_v1", + "local_lexical": false, + "lexical_limit": 20, + "lexical_min_jaccard": 0.5 + }, + "candidate_count": 826, + "marker_resolution_issues": [ + { + "marker": "CD15", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD16", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD1D-A-GALCER", + "reason": "policy_withheld", + "representation": "reagent_gate", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein." + }, + { + "marker": "CD3", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD57", + "reason": "policy_withheld", + "representation": "reagent_gate", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein." + }, + { + "marker": "CD8", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "HLA-DR", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "IGA", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGD", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGE", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGG", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGM", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "MR1", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "TCR", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "TCRVA24-JA18", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "TCRAB", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "TCRGD", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "TETRAMER", + "reason": "policy_withheld", + "representation": "reagent_gate", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein." + }, + { + "marker": "V", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + }, + { + "marker": "DELTA", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + }, + { + "marker": "DELTA1", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + }, + { + "marker": "GAMMA", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + } + ], + "cases": [ + { + "case_id": "provisional/SOULCAP:SC000001/Exact", + "cohort": "provisional", + "subject_id": "SOULCAP:SC000001", + "match_type": "Exact", + "targets": [ + "CL:0000623" + ], + "evidence_reference": "mappings/curated_mappings.tsv", + "uncertain": false, + "rank": 6, + "rank_best": 6, + "rank_worst": 32, + "missing_targets": [], + "candidates": [ + { + "cl_id": "CL:0002338", + "label": "CD56-positive, CD161-positive immature natural killer cell, human", + "score": 19, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD34-", + "CD19-", + "CD56+ (1 of 2 alt.)" + ], + "gaps": [ + "CD3-", + "CD45+", + "CD127-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD123-", + "CD33-/CD64- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 3, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [ + { + "sense": "negative", + "pr": "PR:000001002", + "relation": "CL:4030046", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001003", + "relation": "CL:4030046", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD34", + "tokens": [ + "CD34" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001003", + "tokens": [ + "CD34" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "relation": "CL:4030046", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001289", + "relation": "CL:4030046", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD20", + "tokens": [ + "CD20" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001289", + "tokens": [ + "CD20" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001889", + "relation": "CL:4030046", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD14", + "tokens": [ + "CD14" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001889", + "tokens": [ + "CD14" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001024", + "relation": "RO:0002104", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001381", + "relation": "RO:0002104", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD122", + "tokens": [ + "CD122" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001874", + "relation": "RO:0002104", + "asserted": "True", + "paths": [] + }, + { + "sense": "positive", + "pr": "PR:000002065", + "relation": "RO:0002104", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD117", + "tokens": [ + "CD117" + ] + }, + { + "via": "pro_id", + "pr": "PR:000002065", + "tokens": [ + "CD117" + ] + } + ] + } + ] + }, + { + "cl_id": "CL:0000938", + "label": "CD16-negative, CD56-bright natural killer cell, human", + "score": 15, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19-", + "CD56+ (hi) (1 of 2 alt.)" + ], + "gaps": [ + "CD34-", + "CD3-", + "CD45+", + "CD127-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD123-", + "CD33-/CD64- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 3, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [ + { + "sense": "high", + "pr": "PR:000001024", + "relation": "RO:0015015", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001002", + "relation": "CL:4030046", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "relation": "CL:4030046", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001289", + "relation": "CL:4030046", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD20", + "tokens": [ + "CD20" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001289", + "tokens": [ + "CD20" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001483", + "relation": "CL:4030046", + "asserted": "True", + "paths": [] + }, + { + "sense": "negative", + "pr": "PR:000001889", + "relation": "CL:4030046", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD14", + "tokens": [ + "CD14" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001889", + "tokens": [ + "CD14" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000002015", + "relation": "CL:4030046", + "asserted": "True", + "paths": [] + }, + { + "sense": "positive", + "pr": "PR:000001319", + "relation": "RO:0002104", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD84", + "tokens": [ + "CD84" + ] + } + ] + } + ] + }, + { + "cl_id": "CL:0000939", + "label": "CD16-positive, CD56-dim natural killer cell, human", + "score": 15, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19-", + "CD56+ (dim) (1 of 2 alt.)" + ], + "gaps": [ + "CD34-", + "CD3-", + "CD45+", + "CD127-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD123-", + "CD33-/CD64- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 3, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [ + { + "sense": "low", + "pr": "PR:000001024", + "relation": "RO:0015016", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001002", + "relation": "CL:4030046", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "relation": "CL:4030046", + "asserted": "False", + "paths": [ + { + "via": 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}, + { + "case_id": "provisional/SOULCAP:SC000065/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000066/Exact", + "change": "unchanged", + "before_rank": 69, + "after_rank": 69, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000067/Exact", + "change": "improved", + "before_rank": 124, + "after_rank": 60, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000068/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000069/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000070/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000071/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000072/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000073/Exact", + "change": "improved", + "before_rank": 117, + "after_rank": 114, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000074/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000082/Exact", + "change": "unchanged", + "before_rank": 246, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000085/Exact", + "change": "unchanged", + "before_rank": 247, + "after_rank": 247, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000087/Exact", + "change": "unchanged", + "before_rank": 249, + "after_rank": 249, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000089/Exact", + "change": "unchanged", + "before_rank": 246, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000092/Exact", + "change": "unchanged", + "before_rank": 250, + "after_rank": 250, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000096/Exact", + "change": "unchanged", + "before_rank": 246, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000099/Exact", + "change": "unchanged", + "before_rank": 247, + "after_rank": 247, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000103/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + } + ] + } +} diff --git a/reports/regression-followup/corrected/matcher_evaluation.md b/reports/regression-followup/corrected/matcher_evaluation.md new file mode 100644 index 0000000..dc885c5 --- /dev/null +++ b/reports/regression-followup/corrected/matcher_evaluation.md @@ -0,0 +1,849 @@ +# Matcher evaluation + +Target retrieval only; provisional agreement is not validated accuracy. +All cohort cases remain in denominators, including invalid profiles and absent targets. +Primary ranks retain production tie ordering and disqualified candidates. Bounds show tie sensitivity. + +## Metrics + +```json +{ + "reviewed": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional": { + "cases": 80, + "mrr": 0.10839155618111955, + "statuses": { + "below_top_5": 45, + "hit_at_5": 16, + "invalid_profile": 6, + "target_not_in_index": 13 + }, + "cases_with_missing_targets": 15, + "top1_disqualified": 0, + "hit_at_1": 0.0375, + "hit_at_1_optimistic": 0.075, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.1375, + "hit_at_3_optimistic": 0.15, + "hit_at_3_pessimistic": 0.05, + "hit_at_5": 0.2, + "hit_at_5_optimistic": 0.2, + "hit_at_5_pessimistic": 0.0875 + } +} +``` + +## Relation breakdown + +```json +{ + "reviewed/Exact": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Broad": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Exact": { + "cases": 50, + "mrr": 0.11803153054475977, + "statuses": { + "below_top_5": 28, + "hit_at_5": 10, + "invalid_profile": 6, + "target_not_in_index": 6 + }, + "cases_with_missing_targets": 8, + "top1_disqualified": 0, + "hit_at_1": 0.04, + "hit_at_1_optimistic": 0.1, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.14, + "hit_at_3_optimistic": 0.16, + "hit_at_3_pessimistic": 0.06, + "hit_at_5": 0.2, + "hit_at_5_optimistic": 0.2, + "hit_at_5_pessimistic": 0.08 + }, + "provisional/Broad": { + "cases": 30, + "mrr": 0.09232493224171927, + "statuses": { + "hit_at_5": 6, + "below_top_5": 17, + "target_not_in_index": 7 + }, + "cases_with_missing_targets": 7, + "top1_disqualified": 0, + "hit_at_1": 0.03333333333333333, + "hit_at_1_optimistic": 0.03333333333333333, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.13333333333333333, + "hit_at_3_optimistic": 0.13333333333333333, + "hit_at_3_pessimistic": 0.03333333333333333, + "hit_at_5": 0.2, + "hit_at_5_optimistic": 0.2, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + } +} +``` + +## Baseline comparison + +Input/config changes make comparisons non-equivalent. + +```json +{ + "comparable": true, + "differences": [], + "matcher_changed": true, + "changes": [ + { + "case_id": "provisional/SOULCAP:SC000001/Exact", + "change": "unchanged", + "before_rank": 6, + "after_rank": 6, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000002/Exact", + "change": "unchanged", + "before_rank": 1, + "after_rank": 1, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000003/Exact", + "change": "unchanged", + "before_rank": 3, + "after_rank": 3, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000004/Broad", + "change": "unchanged", + "before_rank": 3, + "after_rank": 3, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000005/Broad", + "change": "unchanged", + "before_rank": 3, + "after_rank": 3, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000006/Broad", + "change": "unchanged", + "before_rank": 3, + "after_rank": 3, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000007/Exact", + "change": "unchanged", + "before_rank": 162, + "after_rank": 162, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000008/Exact", + "change": "unchanged", + "before_rank": 171, + "after_rank": 171, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000009/Exact", + "change": "unchanged", + "before_rank": 25, + "after_rank": 25, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000010/Exact", + "change": "unchanged", + "before_rank": 118, + "after_rank": 118, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000011/Exact", + "change": "unchanged", + "before_rank": 20, + "after_rank": 20, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000012/Exact", + "change": "unchanged", + "before_rank": 2, + "after_rank": 2, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000013/Exact", + "change": "unchanged", + "before_rank": 2, + "after_rank": 2, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000014/Exact", + "change": "unchanged", + "before_rank": 36, + "after_rank": 36, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000015/Exact", + "change": "unchanged", + "before_rank": 2, + "after_rank": 2, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000016/Exact", + "change": "unchanged", + "before_rank": 1, + "after_rank": 1, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000017/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000018/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000019/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000020/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000021/Exact", + "change": "unchanged", + "before_rank": 10, + "after_rank": 10, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000022/Exact", + "change": "unchanged", + "before_rank": 4, + "after_rank": 4, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000023/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000024/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000025/Exact", + "change": "unchanged", + "before_rank": 3, + "after_rank": 3, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000026/Exact", + "change": "unchanged", + "before_rank": 6, + "after_rank": 6, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000028/Broad", + "change": "unchanged", + "before_rank": 1, + "after_rank": 1, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000029/Exact", + "change": "unchanged", + "before_rank": 48, + "after_rank": 48, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000030/Exact", + "change": "unchanged", + "before_rank": 20, + "after_rank": 20, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000031/Exact", + "change": "unchanged", + "before_rank": 5, + "after_rank": 5, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000032/Exact", + "change": "unchanged", + "before_rank": 5, + "after_rank": 5, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000033/Broad", + "change": "unchanged", + "before_rank": 12, + "after_rank": 12, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000034/Broad", + "change": "unchanged", + "before_rank": 4, + "after_rank": 4, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000035/Broad", + "change": "unchanged", + "before_rank": 5, + "after_rank": 5, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000036/Broad", + "change": "unchanged", + "before_rank": 12, + "after_rank": 12, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000037/Exact", + "change": "unchanged", + "before_rank": 39, + "after_rank": 39, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000039/Exact", + "change": "unchanged", + "before_rank": 13, + "after_rank": 13, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000040/Exact", + "change": "unchanged", + "before_rank": 33, + "after_rank": 33, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000041/Exact", + "change": "unchanged", + "before_rank": 14, + "after_rank": 14, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000042/Exact", + "change": "unchanged", + "before_rank": 18, + "after_rank": 18, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000043/Exact", + "change": "unchanged", + "before_rank": 18, + "after_rank": 18, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000044/Exact", + "change": "unchanged", + "before_rank": 17, + "after_rank": 17, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000045/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000046/Broad", + "change": "unchanged", + "before_rank": 87, + "after_rank": 87, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000047/Broad", + "change": "regressed", + "before_rank": 127, + "after_rank": 132, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000048/Broad", + "change": "regressed", + "before_rank": 119, + "after_rank": 121, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000049/Broad", + "change": "unchanged", + "before_rank": 87, + "after_rank": 87, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000050/Broad", + "change": "unchanged", + "before_rank": 120, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000051/Broad", + "change": "regressed", + "before_rank": 114, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000052/Broad", + "change": "regressed", + "before_rank": 120, + "after_rank": 126, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000053/Broad", + "change": "improved", + "before_rank": 115, + "after_rank": 88, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000054/Broad", + "change": "unchanged", + "before_rank": 87, + "after_rank": 87, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000055/Broad", + "change": "unchanged", + "before_rank": 120, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000056/Broad", + "change": "regressed", + "before_rank": 114, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000057/Broad", + "change": "regressed", + "before_rank": 120, + "after_rank": 126, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000058/Broad", + "change": "improved", + "before_rank": 120, + "after_rank": 89, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000059/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000060/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000061/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000062/Broad", + "change": "unchanged", + "before_rank": 70, + "after_rank": 70, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000063/Broad", + "change": "improved", + "before_rank": 125, + "after_rank": 60, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000064/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000065/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000066/Exact", + "change": "unchanged", + "before_rank": 69, + "after_rank": 69, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000067/Exact", + "change": "improved", + "before_rank": 124, + "after_rank": 60, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000068/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000069/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000070/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000071/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000072/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000073/Exact", + "change": "improved", + "before_rank": 117, + "after_rank": 114, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000074/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000082/Exact", + "change": "unchanged", + "before_rank": 246, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000085/Exact", + "change": "unchanged", + "before_rank": 247, + "after_rank": 247, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000087/Exact", + "change": "unchanged", + "before_rank": 249, + "after_rank": 249, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000089/Exact", + "change": "unchanged", + "before_rank": 246, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000092/Exact", + "change": "unchanged", + "before_rank": 250, + "after_rank": 250, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000096/Exact", + "change": "unchanged", + "before_rank": 246, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000099/Exact", + "change": "unchanged", + "before_rank": 247, + "after_rank": 247, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000103/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + } + ] +} +``` + +See matcher_evaluation.tsv for per-case failures and matcher_evaluation.json for full evidence and provenance. diff --git a/reports/regression-followup/corrected/matcher_evaluation.tsv b/reports/regression-followup/corrected/matcher_evaluation.tsv new file mode 100644 index 0000000..4640bff --- /dev/null +++ b/reports/regression-followup/corrected/matcher_evaluation.tsv @@ -0,0 +1,81 @@ +case_id cohort subject_id match_type targets status rank rank_best rank_worst missing_targets note candidates target_results +provisional/SOULCAP:SC000001/Exact provisional SOULCAP:SC000001 Exact "[""CL:0000623""]" below_top_5 6 6 32 [] "[{""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD3-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""relation"": ""CL:4030046"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001024"", ""relation"": ""RO:0002104"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001381"", ""relation"": ""RO:0002104"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD122"", ""tokens"": [""CD122""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""relation"": ""RO:0002104"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""relation"": ""RO:0002104"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19-"", ""CD56+ (hi) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD3-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000001024"", ""relation"": ""RO:0015015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""relation"": ""CL:4030046"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""relation"": ""CL:4030046"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""relation"": ""RO:0002104"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]}, {""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD3-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""low"", ""pr"": ""PR:000001024"", ""relation"": ""RO:0015016"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""relation"": ""CL:4030046"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001483"", ""relation"": ""RO:0002104"", ""asserted"": ""True"", ""paths"": []}]}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19-"", ""CD56+ (hi) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD3-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000001024"", ""relation"": ""RO:0015015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""relation"": ""CL:4030046"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000009766"", ""relation"": ""RO:0002104"", ""asserted"": ""True"", ""paths"": []}]}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 13, ""matched"": [""CD34-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD3-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}]}, {""sense"": ""negative"", 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""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000001024"", ""relation"": ""RO:0015015"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""relation"": ""CL:4030046"", ""asserted"": ""False"", ""paths"": 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any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0001024", + "label": "CD34-positive, CD38-negative hematopoietic stem cell", + "score": 12, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 2, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0000938", + "label": "CD16-negative, CD56-bright natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0002343", + "label": "decidual natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + } + ], + "target_results": [ + { + "cl_id": "CL:0000913", + "label": "effector memory CD8-positive, alpha-beta T cell", + "score": 3, + "matched": [], + "gaps": [ + "CD14-/CD33-/CD64- (no axiom on any alt.)", + "CD19-/CD20- (no axiom on any alt.)", + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 3, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [], + "rank": 239, + "rank_best": 238, + "rank_worst": 247 + } + ], + "status": "below_top_5", + "note": "" + }, + { + "case_id": "provisional/SOULCAP:SC000103/Exact", + "cohort": "provisional", + "subject_id": "SOULCAP:SC000103", + "match_type": "Exact", + "targets": [ + "CL:4030002" + ], + "evidence_reference": "mappings/curated_mappings.tsv", + "uncertain": false, + "rank": null, + "rank_best": null, + "rank_worst": null, + "missing_targets": [ + "CL:4030002" + ], + "candidates": [ + { + "cl_id": "CL:0001057", + "label": "myeloid dendritic cell, human", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0002000", + "label": "Kit-positive erythroid progenitor cell", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0000938", + "label": "CD16-negative, CD56-bright natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0001024", + "label": "CD34-positive, CD38-negative hematopoietic stem cell", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0002343", + "label": "decidual natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + } + ], + "target_results": [], + "status": "target_not_in_index", + "note": "" + } + ], + "metrics": { + "reviewed": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional": { + "cases": 80, + "mrr": 0.1524095320342756, + "statuses": { + "below_top_5": 42, + "hit_at_5": 19, + "invalid_profile": 6, + "target_not_in_index": 13 + }, + "cases_with_missing_targets": 15, + "top1_disqualified": 0, + "hit_at_1": 0.0875, + "hit_at_1_optimistic": 0.125, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.15, + "hit_at_3_optimistic": 0.2, + "hit_at_3_pessimistic": 0.0875, + "hit_at_5": 0.2375, + "hit_at_5_optimistic": 0.275, + "hit_at_5_pessimistic": 0.1 + } + }, + "by_relation": { + "reviewed/Exact": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Broad": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Exact": { + "cases": 50, + "mrr": 0.15217520145714408, + "statuses": { + "below_top_5": 26, + "hit_at_5": 12, + "invalid_profile": 6, + "target_not_in_index": 6 + }, + "cases_with_missing_targets": 8, + "top1_disqualified": 0, + "hit_at_1": 0.08, + "hit_at_1_optimistic": 0.14, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.16, + "hit_at_3_optimistic": 0.18, + "hit_at_3_pessimistic": 0.08, + "hit_at_5": 0.24, + "hit_at_5_optimistic": 0.24, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Broad": { + "cases": 30, + "mrr": 0.1528000829961614, + "statuses": { + "hit_at_5": 7, + "below_top_5": 16, + "target_not_in_index": 7 + }, + "cases_with_missing_targets": 7, + "top1_disqualified": 0, + "hit_at_1": 0.1, + "hit_at_1_optimistic": 0.1, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.13333333333333333, + "hit_at_3_optimistic": 0.23333333333333334, + "hit_at_3_pessimistic": 0.1, + "hit_at_5": 0.23333333333333334, + "hit_at_5_optimistic": 0.3333333333333333, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + } + } +} diff --git a/reports/regression-followup/legacy/matcher_evaluation.md b/reports/regression-followup/legacy/matcher_evaluation.md new file mode 100644 index 0000000..5ed8fdf --- /dev/null +++ b/reports/regression-followup/legacy/matcher_evaluation.md @@ -0,0 +1,195 @@ +# Matcher evaluation + +Target retrieval only; provisional agreement is not validated accuracy. +All cohort cases remain in denominators, including invalid profiles and absent targets. +Primary ranks retain production tie ordering and disqualified candidates. Bounds show tie sensitivity. + +## Metrics + +```json +{ + "reviewed": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional": { + "cases": 80, + "mrr": 0.1524095320342756, + "statuses": { + "below_top_5": 42, + "hit_at_5": 19, + "invalid_profile": 6, + "target_not_in_index": 13 + }, + "cases_with_missing_targets": 15, + "top1_disqualified": 0, + "hit_at_1": 0.0875, + "hit_at_1_optimistic": 0.125, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.15, + "hit_at_3_optimistic": 0.2, + "hit_at_3_pessimistic": 0.0875, + "hit_at_5": 0.2375, + "hit_at_5_optimistic": 0.275, + "hit_at_5_pessimistic": 0.1 + } +} +``` + +## Relation breakdown + +```json +{ + "reviewed/Exact": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Broad": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Exact": { + "cases": 50, + "mrr": 0.15217520145714408, + "statuses": { + "below_top_5": 26, + "hit_at_5": 12, + "invalid_profile": 6, + "target_not_in_index": 6 + }, + "cases_with_missing_targets": 8, + "top1_disqualified": 0, + "hit_at_1": 0.08, + "hit_at_1_optimistic": 0.14, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.16, + "hit_at_3_optimistic": 0.18, + "hit_at_3_pessimistic": 0.08, + "hit_at_5": 0.24, + "hit_at_5_optimistic": 0.24, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Broad": { + "cases": 30, + "mrr": 0.1528000829961614, + "statuses": { + "hit_at_5": 7, + "below_top_5": 16, + "target_not_in_index": 7 + }, + "cases_with_missing_targets": 7, + "top1_disqualified": 0, + "hit_at_1": 0.1, + "hit_at_1_optimistic": 0.1, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.13333333333333333, + "hit_at_3_optimistic": 0.23333333333333334, + "hit_at_3_pessimistic": 0.1, + "hit_at_5": 0.23333333333333334, + "hit_at_5_optimistic": 0.3333333333333333, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + } +} +``` + +See matcher_evaluation.tsv for per-case failures and matcher_evaluation.json for full evidence and provenance. diff --git a/reports/regression-followup/legacy/matcher_evaluation.tsv b/reports/regression-followup/legacy/matcher_evaluation.tsv new file mode 100644 index 0000000..e878348 --- /dev/null +++ b/reports/regression-followup/legacy/matcher_evaluation.tsv @@ -0,0 +1,81 @@ +case_id cohort subject_id match_type targets status rank rank_best rank_worst missing_targets note candidates target_results +provisional/SOULCAP:SC000001/Exact provisional SOULCAP:SC000001 Exact "[""CL:0000623""]" below_top_5 6 6 32 [] "[{""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (hi) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (hi) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+/CD56:high (no axiom on any alt.)"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 6, ""rank_best"": 6, ""rank_worst"": 32}]" +provisional/SOULCAP:SC000002/Exact provisional SOULCAP:SC000002 Exact "[""CL:0000938""]" hit_at_5 1 1 2 [] "[{""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56:high (hi)"", ""CD16- (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56:high (hi)"", ""CD16- (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD56:high"", ""CD127-"", ""CD16-/CD16:low (no axiom on any alt.)"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56:high"", ""CD127-"", ""CD16-/CD16:low (no axiom on any alt.)"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000823"", ""label"": ""immature natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56:high"", ""CD127-"", ""CD16-/CD16:low (no axiom on any alt.)"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56:high (hi)"", ""CD16- (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000003/Exact provisional SOULCAP:SC000003 Exact "[""CL:0000939""]" hit_at_5 1 1 2 [] "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD45+"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+/CD56:high (no axiom on any alt.)"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000823"", ""label"": ""immature natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+/CD56:high (no axiom on any alt.)"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000004/Broad provisional SOULCAP:SC000004 Broad "[""CL:0000939""]" hit_at_5 1 1 2 [] "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD45+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002346"", ""label"": ""Dx5-negative, NK1.1-positive immature natural killer cell, mouse"", ""score"": 16, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002438"", ""label"": ""NK1.1-positive natural killer cell, mouse"", ""score"": 16, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000005/Broad provisional SOULCAP:SC000005 Broad "[""CL:0000939""]" hit_at_5 1 1 2 [] "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD45+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000823"", ""label"": ""immature natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000006/Broad provisional SOULCAP:SC000006 Broad "[""CL:0001074""]" hit_at_5 3 3 3 [] "[{""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 15, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001076"", ""label"": ""NKp46-positive innate lymphoid cell, human"", ""score"": 15, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001074"", ""label"": ""CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human"", ""score"": 14, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 13, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001072"", ""label"": ""CD34-negative, CD117-positive innate lymphoid cell, human"", ""score"": 11, ""matched"": [""CD3-"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD56+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001074"", ""label"": ""CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human"", ""score"": 14, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 3, ""rank_best"": 3, ""rank_worst"": 3}]" +provisional/SOULCAP:SC000007/Exact provisional SOULCAP:SC000007 Exact "[""CL:0001065""]" below_top_5 155 155 159 [] "[{""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 23, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 23, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 23, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD123-""], ""gaps"": [""CD45+"", ""CD127+"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002089"", ""label"": ""group 2 innate lymphoid cell, mouse"", ""score"": 23, ""matched"": [""CD33- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD127+""], ""gaps"": [""CD34-"", ""CD45+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001065"", ""label"": ""innate lymphoid cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD19-"", ""CD3-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD127+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 155, ""rank_best"": 155, ""rank_worst"": 159}]" +provisional/SOULCAP:SC000008/Exact provisional SOULCAP:SC000008 Exact "[""CL:0001067""]" below_top_5 161 150 165 [] "[{""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117-"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117-"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117-"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 27, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD56-"", ""CD123-""], ""gaps"": [""CD45+"", ""CD127+"", ""CD117-"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002089"", ""label"": ""group 2 innate lymphoid cell, mouse"", ""score"": 27, ""matched"": [""CD33- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD127+"", ""CD56-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD117-"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001067"", ""label"": ""group 1 innate lymphoid cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD19-"", ""CD3-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD127+"", ""CD56-"", ""CD117-"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 161, ""rank_best"": 150, ""rank_worst"": 165}]" +provisional/SOULCAP:SC000009/Exact provisional SOULCAP:SC000009 Exact "[""CL:0001081""]" below_top_5 26 25 32 [] "[{""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 29, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD117:low (dim) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD127+"", ""CD294+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 27, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD56-"", ""CD123-""], ""gaps"": [""CD45+"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001081"", ""label"": ""group 2 innate lymphoid cell, human"", ""score"": 23, ""matched"": [""CD3-"", ""CD19-"", ""CD3-"", ""CD127+"", ""CD294+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD56-"", ""CD117:low/CD117- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 26, ""rank_best"": 25, ""rank_worst"": 32}]" +provisional/SOULCAP:SC000010/Exact provisional SOULCAP:SC000010 Exact "[""CL:0001078""]" below_top_5 118 118 120 [] "[{""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 29, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD117+ (dim)""], ""gaps"": [""CD34-"", ""CD127+"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002344"", ""label"": ""CD56-negative, CD161-positive immature natural killer cell, human"", ""score"": 29, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117+"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117+"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117+"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001078"", ""label"": ""group 3 innate lymphoid cell, human"", ""score"": 19, ""matched"": [""CD3-"", ""CD19-"", ""CD3-"", ""CD127+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD56:low/CD56- (no axiom on any alt.)"", ""CD117+"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 118, ""rank_best"": 118, ""rank_worst"": 120}]" +provisional/SOULCAP:SC000011/Exact provisional SOULCAP:SC000011 Exact "[""CL:0000990""]" below_top_5 18 15 21 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 21, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD3-"", ""CD19-"", ""CD56-"", ""CD127-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""CD11C:high"", ""HLA-DR+""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000782"", ""label"": ""myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002399"", ""label"": ""CD1c-positive myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000990"", ""label"": ""conventional dendritic cell"", ""score"": 13, ""matched"": [""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD123:not:high/CD193- (no axiom on any alt.)"", ""CD123:not:high/CD303- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 18, ""rank_best"": 15, ""rank_worst"": 21}]" +provisional/SOULCAP:SC000012/Exact provisional SOULCAP:SC000012 Exact "[""CL:0002394""]" hit_at_5 2 1 2 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD141+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 21, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD3-"", ""CD19-"", ""CD56-"", ""CD127-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""CD11C:high"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000782"", ""label"": ""myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0011031"", ""label"": ""monocyte-derived dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD141+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 2, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000013/Exact provisional SOULCAP:SC000013 Exact "[""CL:0002399""]" hit_at_5 2 1 2 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002399"", ""label"": ""CD1c-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD1C+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 21, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD3-"", ""CD19-"", ""CD56-"", ""CD127-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""CD11C:high"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000782"", ""label"": ""myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0002399"", ""label"": ""CD1c-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD1C+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 2, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000014/Exact provisional SOULCAP:SC000014 Exact "[""CL:0001058""]" below_top_5 34 27 42 [] "[{""cl_id"": ""CL:0000991"", ""label"": ""CD11c-negative plasmacytoid dendritic cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD303+ (1 of 3 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000994"", ""label"": ""immature CD11c-negative plasmacytoid dendritic cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD303+ (1 of 3 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000996"", ""label"": ""mature CD11c-negative plasmacytoid dendritic cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD303+ (1 of 3 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002008"", ""label"": ""CD34-positive, CD38-positive eosinophil progenitor cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD193-/FCER1A-/CD303+ (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD193-/FCER1A-/CD303+ (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001058"", ""label"": ""plasmacytoid dendritic cell, human"", ""score"": 12, ""matched"": [""CD3-"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD45+"", ""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD193-/FCER1A-/CD303+ (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 27, ""rank_worst"": 42}]" +provisional/SOULCAP:SC000015/Exact provisional SOULCAP:SC000015 Exact "[""CL:0000043""]" hit_at_5 3 3 7 [] "[{""cl_id"": ""CL:0000614"", ""label"": ""basophilic myelocyte"", ""score"": 18, ""matched"": [""CD3-"", ""CD33+ (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-"", ""CD16-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD14-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [""CD15-/CD66B- (all alt. conflict)""], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002008"", ""label"": ""CD34-positive, CD38-positive eosinophil progenitor cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD123+ (1 of 2 alt.)"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD193+/FCER1A+/HLA-DR-/CD303- (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD123+ (hi) (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000612"", ""label"": ""eosinophilic myelocyte"", ""score"": 17, ""matched"": [""CD3-"", ""CD33+ (1 of 2 alt.)"", ""CD193+ (1 of 4 alt.)"", ""CD56-"", ""CD19-"", ""CD16-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD14-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [""CD15-/CD66B- (all alt. conflict)""], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000767"", ""label"": ""basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD123+ (hi) (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD123+ (hi) (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 3, ""rank_best"": 3, ""rank_worst"": 7}]" +provisional/SOULCAP:SC000016/Exact provisional SOULCAP:SC000016 Exact "[""CL:0000043""]" hit_at_5 1 1 4 [] "[{""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000767"", ""label"": ""basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000768"", ""label"": ""immature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000770"", ""label"": ""band form basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000942"", ""label"": ""thymic plasmacytoid dendritic cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD45+"", ""CD123+"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD193+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 4}]" +provisional/SOULCAP:SC000017/Exact provisional SOULCAP:SC000017 Exact "[""CL:0000576""]" invalid_profile "[""CL:0000576""]" invalid expression in Required exclusion: unexpected ')' in group [] [] +provisional/SOULCAP:SC000018/Exact provisional SOULCAP:SC000018 Exact "[""CL:0000860""]" invalid_profile [] invalid expression in Required exclusion: unexpected ')' in group [] [] +provisional/SOULCAP:SC000019/Exact provisional SOULCAP:SC000019 Exact "[""CL:0000875""]" invalid_profile [] invalid expression in Required exclusion: unexpected ')' in group [] [] +provisional/SOULCAP:SC000020/Exact provisional SOULCAP:SC000020 Exact "[""CL:0002393""]" invalid_profile [] invalid expression in Required exclusion: unexpected ')' in group [] [] +provisional/SOULCAP:SC000021/Exact provisional SOULCAP:SC000021 Exact "[""CL:0000775""]" below_top_5 9 7 16 [] "[{""cl_id"": ""CL:0000582"", ""label"": ""neutrophilic metamyelocyte"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD19-"", ""CD33+ (1 of 2 alt.)""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001021"", ""label"": ""CD34-positive, CD38-positive common lymphoid progenitor"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD45+"", ""CD19-""], ""gaps"": [""CD123-"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD123-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD123-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD45+"", ""CD19-""], ""gaps"": [""CD123-"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000775"", ""label"": ""neutrophil"", ""score"": 16, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 9, ""rank_best"": 7, ""rank_worst"": 16}]" +provisional/SOULCAP:SC000022/Exact provisional SOULCAP:SC000022 Exact "[""CL:0000771""]" hit_at_5 4 2 7 [] "[{""cl_id"": ""CL:0000612"", ""label"": ""eosinophilic myelocyte"", ""score"": 26, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD16-"", ""CD19-"", ""CD33+ (1 of 2 alt.)""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000041"", ""label"": ""mature eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000580"", ""label"": ""neutrophilic myelocyte"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD16-"", ""CD19-"", ""CD33+ (1 of 2 alt.)""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD193+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000771"", ""label"": ""eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000772"", ""label"": ""immature eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000771"", ""label"": ""eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 2, ""rank_worst"": 7}]" +provisional/SOULCAP:SC000023/Exact provisional SOULCAP:SC000023 Exact "[""CL:0000236""]" target_not_in_index "[""CL:0000236""]" "[{""cl_id"": ""CL:0000819"", ""label"": ""B-1 B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000820"", ""label"": ""B-1a B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000821"", ""label"": ""B-1b B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000843"", ""label"": ""follicular B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000024/Exact provisional SOULCAP:SC000024 Exact "[""CL:0000946""]" target_not_in_index "[""CL:0000946""]" "[{""cl_id"": ""CL:0000949"", ""label"": ""IgD plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000950"", ""label"": ""IgE plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000980"", ""label"": ""plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000982"", ""label"": ""IgG plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000983"", ""label"": ""IgM plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000025/Exact provisional SOULCAP:SC000025 Exact "[""CL:0000980""]" hit_at_5 3 1 7 [] "[{""cl_id"": ""CL:0000949"", ""label"": ""IgD plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000950"", ""label"": ""IgE plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000980"", ""label"": ""plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000982"", ""label"": ""IgG plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000983"", ""label"": ""IgM plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000980"", ""label"": ""plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 3, ""rank_best"": 1, ""rank_worst"": 7}]" +provisional/SOULCAP:SC000026/Exact provisional SOULCAP:SC000026 Exact "[""CL:0000786""]" below_top_5 31 31 53 [] "[{""cl_id"": ""CL:0002047"", ""label"": ""fraction B precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002049"", ""label"": ""fraction C precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002050"", ""label"": ""fraction C' precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002051"", ""label"": ""CD38-high pre-BCR positive cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD19+"", ""CD38:high (hi)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002052"", ""label"": ""fraction D precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 8, ""matched"": [""CD138+"", ""CD20-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD3-"", ""CD56-"", ""CD45+"", ""CD19+"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 31, ""rank_best"": 31, ""rank_worst"": 53}]" +provisional/SOULCAP:SC000028/Broad provisional SOULCAP:SC000028 Broad "[""CL:0000818""]" hit_at_5 1 1 6 [] "[{""cl_id"": ""CL:0000818"", ""label"": ""transitional stage B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000958"", ""label"": ""T1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000959"", ""label"": ""T2 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000960"", ""label"": ""T3 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:high/CD10:high (no axiom on any alt.)"", ""CD24:high"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000818"", ""label"": ""transitional stage B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 6}]" +provisional/SOULCAP:SC000029/Exact provisional SOULCAP:SC000029 Exact "[""CL:0000785""]" below_top_5 43 43 45 [] "[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002055"", ""label"": ""CD38-negative immature B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000785"", ""label"": ""mature B cell"", ""score"": 10, ""matched"": [""CD3-"", ""CD19+ (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20+""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 43, ""rank_best"": 43, ""rank_worst"": 45}]" +provisional/SOULCAP:SC000030/Exact provisional SOULCAP:SC000030 Exact "[""CL:0000960""]" below_top_5 20 13 26 [] "[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10:low (no axiom on any alt.)"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10:low (no axiom on any alt.)"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002054"", ""label"": ""fraction E immature B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+"", ""CD127-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low/CD38-/CD10:low (no axiom on any alt.)"", ""IGD+"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000960"", ""label"": ""T3 B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10:low (no axiom on any alt.)"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 20, ""rank_best"": 13, ""rank_worst"": 26}]" +provisional/SOULCAP:SC000031/Exact provisional SOULCAP:SC000031 Exact "[""CL:0000788""]" hit_at_5 5 5 8 [] "[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000788"", ""label"": ""naive B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000788"", ""label"": ""naive B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 5, ""rank_best"": 5, ""rank_worst"": 8}]" +provisional/SOULCAP:SC000032/Exact provisional SOULCAP:SC000032 Exact "[""CL:0000981""]" hit_at_5 5 5 8 [] "[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 5, ""rank_best"": 5, ""rank_worst"": 8}]" +provisional/SOULCAP:SC000033/Broad provisional SOULCAP:SC000033 Broad "[""CL:0000981""]" below_top_5 12 12 19 [] "[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 23, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002055"", ""label"": ""CD38-negative immature B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+ (dim)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000843"", ""label"": ""follicular B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000959"", ""label"": ""T2 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 12, ""rank_best"": 12, ""rank_worst"": 19}]" +provisional/SOULCAP:SC000034/Broad provisional SOULCAP:SC000034 Broad "[""CL:0000981""]" hit_at_5 4 4 6 [] "[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002103"", ""label"": ""IgG-positive double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 4, ""rank_worst"": 6}]" +provisional/SOULCAP:SC000035/Broad provisional SOULCAP:SC000035 Broad "[""CL:0000981""]" hit_at_5 5 5 12 [] "[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000958"", ""label"": ""T1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD21-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)"", ""IGD-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 5, ""rank_best"": 5, ""rank_worst"": 12}]" +provisional/SOULCAP:SC000036/Broad provisional SOULCAP:SC000036 Broad "[""CL:0000981""]" below_top_5 12 12 19 [] "[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 23, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002055"", ""label"": ""CD38-negative immature B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+ (dim)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000843"", ""label"": ""follicular B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000959"", ""label"": ""T2 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 12, ""rank_best"": 12, ""rank_worst"": 19}]" +provisional/SOULCAP:SC000037/Exact provisional SOULCAP:SC000037 Exact "[""CL:0000787""]" below_top_5 39 39 42 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002108"", ""label"": ""CD38-negative IgG memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000787"", ""label"": ""memory B cell"", ""score"": 12, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 39, ""rank_best"": 39, ""rank_worst"": 42}]" +provisional/SOULCAP:SC000039/Exact provisional SOULCAP:SC000039 Exact "[""CL:0000970""]" below_top_5 13 13 14 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002116"", ""label"": ""B220-low CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000970"", ""label"": ""unswitched memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 13, ""rank_best"": 13, ""rank_worst"": 14}]" +provisional/SOULCAP:SC000040/Exact provisional SOULCAP:SC000040 Exact "[""CL:0000971""]" below_top_5 33 33 39 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002108"", ""label"": ""CD38-negative IgG memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000971"", ""label"": ""IgM memory B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 33, ""rank_best"": 33, ""rank_worst"": 39}]" +provisional/SOULCAP:SC000041/Exact provisional SOULCAP:SC000041 Exact "[""CL:0000972""]" below_top_5 14 13 18 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002116"", ""label"": ""B220-low CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000972"", ""label"": ""class switched memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 14, ""rank_best"": 13, ""rank_worst"": 18}]" +provisional/SOULCAP:SC000042/Exact provisional SOULCAP:SC000042 Exact "[""CL:0000973""]" below_top_5 18 17 19 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002118"", ""label"": ""CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002120"", ""label"": ""CD24-positive CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002121"", ""label"": ""CD24-negative CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000973"", ""label"": ""IgA memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 18, ""rank_best"": 17, ""rank_worst"": 19}]" +provisional/SOULCAP:SC000043/Exact provisional SOULCAP:SC000043 Exact "[""CL:0000979""]" below_top_5 18 17 22 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002118"", ""label"": ""CD38-negative IgG-negative class switched memory B cell"", ""score"": 22, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002120"", ""label"": ""CD24-positive CD38-negative IgG-negative class switched memory B cell"", ""score"": 22, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002121"", ""label"": ""CD24-negative CD38-negative IgG-negative class switched memory B cell"", ""score"": 22, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000979"", ""label"": ""IgG memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 18, ""rank_best"": 17, ""rank_worst"": 22}]" +provisional/SOULCAP:SC000044/Exact provisional SOULCAP:SC000044 Exact "[""CL:0000948""]" below_top_5 17 17 19 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002118"", ""label"": ""CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002120"", ""label"": ""CD24-positive CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002121"", ""label"": ""CD24-negative CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000948"", ""label"": ""IgE memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 17, ""rank_best"": 17, ""rank_worst"": 19}]" +provisional/SOULCAP:SC000045/Exact provisional SOULCAP:SC000045 Exact "[""CL:0000084""]" target_not_in_index "[""CL:0000084""]" "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000046/Broad provisional SOULCAP:SC000046 Broad "[""CL:4052055""]" below_top_5 34 2 34 [] "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 2, ""rank_worst"": 34}]" +provisional/SOULCAP:SC000047/Broad provisional SOULCAP:SC000047 Broad "[""CL:4052055""]" below_top_5 42 13 42 [] "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002430"", ""label"": ""CD4-intermediate, CD8-positive double-positive thymocyte"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002431"", ""label"": ""CD4-positive, CD8-intermediate double-positive thymocyte"", ""score"": 9, ""matched"": [""CD4+"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD4+"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 42, ""rank_best"": 13, ""rank_worst"": 42}]" +provisional/SOULCAP:SC000048/Broad provisional SOULCAP:SC000048 Broad "[""CL:4052055""]" below_top_5 63 39 63 [] "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 14, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 14, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 14, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD4-"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 63, ""rank_best"": 39, ""rank_worst"": 63}]" +provisional/SOULCAP:SC000049/Broad provisional SOULCAP:SC000049 Broad "[""CL:4052055""]" below_top_5 34 2 34 [] "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 2, ""rank_worst"": 34}]" +provisional/SOULCAP:SC000050/Broad provisional SOULCAP:SC000050 Broad "[""CL:4052055""]" below_top_5 70 42 70 [] "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4+"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 70, ""rank_best"": 42, ""rank_worst"": 70}]" +provisional/SOULCAP:SC000051/Broad provisional SOULCAP:SC000051 Broad "[""CL:4052055""]" below_top_5 63 34 63 [] "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4-"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 63, ""rank_best"": 34, ""rank_worst"": 63}]" +provisional/SOULCAP:SC000052/Broad provisional SOULCAP:SC000052 Broad "[""CL:4052055""]" below_top_5 42 9 42 [] "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4+"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 42, ""rank_best"": 9, ""rank_worst"": 42}]" +provisional/SOULCAP:SC000053/Broad provisional SOULCAP:SC000053 Broad "[""CL:4052055""]" below_top_5 54 30 54 [] "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4-"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 54, ""rank_best"": 30, ""rank_worst"": 54}]" +provisional/SOULCAP:SC000054/Broad provisional SOULCAP:SC000054 Broad "[""CL:4052055""]" below_top_5 34 2 34 [] "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 2, ""rank_worst"": 34}]" +provisional/SOULCAP:SC000055/Broad provisional SOULCAP:SC000055 Broad "[""CL:4052055""]" below_top_5 70 42 70 [] "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4+"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 70, ""rank_best"": 42, ""rank_worst"": 70}]" +provisional/SOULCAP:SC000056/Broad provisional SOULCAP:SC000056 Broad "[""CL:4052055""]" below_top_5 63 34 63 [] "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4-"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 63, ""rank_best"": 34, ""rank_worst"": 63}]" +provisional/SOULCAP:SC000057/Broad provisional SOULCAP:SC000057 Broad "[""CL:4052055""]" below_top_5 42 9 42 [] "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4+"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 42, ""rank_best"": 9, ""rank_worst"": 42}]" +provisional/SOULCAP:SC000058/Broad provisional SOULCAP:SC000058 Broad "[""CL:4052055""]" below_top_5 54 30 54 [] "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4-"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 54, ""rank_best"": 30, ""rank_worst"": 54}]" +provisional/SOULCAP:SC000059/Exact provisional SOULCAP:SC000059 Exact "[""CL:0000814""]" invalid_profile [] invalid expression in Required phenotypic markers: mixed '|' and space in a group [] [] +provisional/SOULCAP:SC000060/Exact provisional SOULCAP:SC000060 Exact "[""CL:0000789""]" target_not_in_index "[""CL:0000789""]" "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000061/Exact provisional SOULCAP:SC000061 Exact "[""CL:0000798""]" target_not_in_index "[""CL:0000798""]" "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000062/Broad provisional SOULCAP:SC000062 Broad "[""CL:0000624""]" below_top_5 9 6 36 [] "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000624"", ""label"": ""CD4-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 9, ""rank_best"": 6, ""rank_worst"": 36}]" +provisional/SOULCAP:SC000063/Broad provisional SOULCAP:SC000063 Broad "[""CL:0000625""]" hit_at_5 4 4 27 [] "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 4, ""rank_worst"": 27}]" +provisional/SOULCAP:SC000064/Broad provisional SOULCAP:SC000064 Broad "[""CL:0000789""]" target_not_in_index "[""CL:0000789""]" "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000065/Broad provisional SOULCAP:SC000065 Broad "[""CL:0000084""]" target_not_in_index "[""CL:0000084""]" "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000066/Exact provisional SOULCAP:SC000066 Exact "[""CL:0000624""]" below_top_5 9 6 36 [] "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000624"", ""label"": ""CD4-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 9, ""rank_best"": 6, ""rank_worst"": 36}]" +provisional/SOULCAP:SC000067/Exact provisional SOULCAP:SC000067 Exact "[""CL:0000625""]" hit_at_5 4 4 27 [] "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 4, ""rank_worst"": 27}]" +provisional/SOULCAP:SC000068/Broad provisional SOULCAP:SC000068 Broad "[""CL:0000789""]" target_not_in_index "[""CL:0000789""]" "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000069/Broad provisional SOULCAP:SC000069 Broad "[""CL:0000789""]" target_not_in_index "[""CL:0000789""]" "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000070/Broad provisional SOULCAP:SC000070 Broad "[""CL:0000798""]" target_not_in_index "[""CL:0000798""]" "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000071/Broad provisional SOULCAP:SC000071 Broad "[""CL:0000798""]" target_not_in_index "[""CL:0000798""]" "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000072/Broad provisional SOULCAP:SC000072 Broad "[""CL:0000798""]" target_not_in_index "[""CL:0000798""]" "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000073/Exact provisional SOULCAP:SC000073 Exact "[""CL:0000803""]" hit_at_5 1 1 6 [] "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 6}]" +provisional/SOULCAP:SC000074/Exact provisional SOULCAP:SC000074 Exact "[""CL:0000940""]" invalid_profile "[""CL:0000940""]" invalid expression in Required phenotypic markers: mixed '|' and space in a group [] [] +provisional/SOULCAP:SC000082/Exact provisional SOULCAP:SC000082 Exact "[""CL:0000904""]" below_top_5 238 238 243 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000904"", ""label"": ""central memory CD4-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 238, ""rank_best"": 238, ""rank_worst"": 243}]" +provisional/SOULCAP:SC000085/Exact provisional SOULCAP:SC000085 Exact "[""CL:0000907""]" below_top_5 239 238 243 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000907"", ""label"": ""central memory CD8-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 239, ""rank_best"": 238, ""rank_worst"": 243}]" +provisional/SOULCAP:SC000087/Exact provisional SOULCAP:SC000087 Exact "[""CL:0000898""]" below_top_5 252 243 261 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000898"", ""label"": ""naive T cell"", ""score"": 2, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 252, ""rank_best"": 243, ""rank_worst"": 261}]" +provisional/SOULCAP:SC000089/Exact provisional SOULCAP:SC000089 Exact "[""CL:0000895""]" below_top_5 238 238 242 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 238, ""rank_best"": 238, ""rank_worst"": 242}]" +provisional/SOULCAP:SC000092/Exact provisional SOULCAP:SC000092 Exact "[""CL:0000900""]" below_top_5 253 242 258 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 2, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 253, ""rank_best"": 242, ""rank_worst"": 258}]" +provisional/SOULCAP:SC000096/Exact provisional SOULCAP:SC000096 Exact "[""CL:0000905""]" below_top_5 238 238 247 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 12, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000905"", ""label"": ""effector memory CD4-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 238, ""rank_best"": 238, ""rank_worst"": 247}]" +provisional/SOULCAP:SC000099/Exact provisional SOULCAP:SC000099 Exact "[""CL:0000913""]" below_top_5 239 238 247 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 12, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000913"", ""label"": ""effector memory CD8-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 239, ""rank_best"": 238, ""rank_worst"": 247}]" +provisional/SOULCAP:SC000103/Exact provisional SOULCAP:SC000103 Exact "[""CL:4030002""]" target_not_in_index "[""CL:4030002""]" "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] diff --git a/reports/regression-followup/mapping_review.tsv b/reports/regression-followup/mapping_review.tsv new file mode 100644 index 0000000..e6d3140 --- /dev/null +++ b/reports/regression-followup/mapping_review.tsv @@ -0,0 +1,4 @@ +subject_id proposed_cl_id proposed_relation review_outcome blocking_question reviewer evidence_reference +SOULCAP:SC000063 CL:0000625 Broad not_supported_as_written Source includes alpha-beta and gamma-delta populations; target requires alpha-beta lineage. Confirm intended population and relation direction before choosing a replacement. Codex automated evidence review; curator sign-off pending reports/regression-followup/README.md#expected-mapping-review +SOULCAP:SC000067 CL:0000625 Exact plausible_retrieval_target_equivalence_unconfirmed Confirm that the operational OR gate and additional exclusions are intended to define this CL population in the source assay context. Codex automated evidence review; curator sign-off pending https://doi.org/10.1002/cyto.a.23853 +SOULCAP:SC000073 CL:0000803 Exact not_supported_as_written Target requires intraepithelial location; source supplies no tissue context. Confirm location or consider a non-tissue-specific target and appropriate relation. Codex automated evidence review; curator sign-off pending reports/regression-followup/README.md#expected-mapping-review diff --git a/reports/regression-triage/README.md b/reports/regression-triage/README.md new file mode 100644 index 0000000..190d9da --- /dev/null +++ b/reports/regression-triage/README.md @@ -0,0 +1,53 @@ +# Regression triage findings — 2026-09-18 + +The eight diagnostic runs isolate the observed regression to **evidence removed +by stricter resolution rules**. Alias/allowed-PRO additions and semantic-clause +deduplication cause no expected-target rank changes in any paired factor toggle +on this snapshot. This does not establish that they will have no effect on other +datasets or that the existing expected mappings are biologically correct. + +The candidate pool and its order remain fixed at 826 CL terms. Both endpoints +reproduce production results. No lexical expansion was enabled. All 80 cases +are provisional; there are no reviewed benchmark cases. + +## Three top-five losses + +| SOULCAP entity | Expected target | Legacy rank | Refined rank | Lost target evidence | +|---|---|---:|---:|---| +| SC000063 — alpha/beta and gamma/delta CD8+ T cells | CL:0000625 (Broad) | 4 | 125 | CD8+ | +| SC000067 — CD8+ alpha/beta T cell | CL:0000625 (Exact) | 4 | 124 | CD8+ | +| SC000073 — CD4-/CD8- gamma/delta T cell | CL:0000803 (Exact) | 1 | 117 | CD8- | + +Each expected target loses four score points without becoming disqualified. +Meanwhile, competitors such as CL:0002000 (Kit-positive erythroid progenitor +cell) lose CD3/CD8 contradictions and cease to be disqualified. That term moves +from rank 415 to rank 1 for the first two cases and from rank 406 to rank 1 for +the third. Removing evidence therefore affects both positive support and the +contradiction-based ordering rule; it is not just a small score reduction. + +The old top-five results were tie-sensitive: the CD8-positive targets had a +4–27 tie range, and the gamma/delta target had a 1–6 range. They were not robust +top-five hits under arbitrary tie reordering. + +Across all cases: **32 target ranks worsened, 5 improved, 43 were unchanged**. +There were three top-five losses and no top-five gains (19/80 → 16/80). + +## Next review, not an automatic fix + +Review the CD3/CD8 policies and the exact CL assertions shown in the JSON. +Determine whether withholding component-to-whole-marker inference should also +discard these existing ontology assertions. Do not automatically restore them +just to recover the old metric, and do not treat the newly promoted competitors +as biologically validated. Check the provisional expected targets too. + +Production scoring, biological policies, mappings, and existing exports were +not changed by this investigation. + +- [Full report: eight runs, boundary cases, and all rank changes](regression_triage.md) +- [JSON: profiles, targets, competitor scores, axiom and policy evidence, paired factor effects, hashes](regression_triage.json) +- [TSV: every case's rank in every run](regression_triage.tsv) + +Reproduce with `uv run python -m soulcap_cl_mapping.regression_triage`. +The diagnostic factors partition actual added/removed token evidence, rather +than claiming unique additive biological causes. Intermediate combinations are +not supported deployment settings. diff --git a/reports/regression-triage/regression_triage.json b/reports/regression-triage/regression_triage.json new file mode 100644 index 0000000..0369b3a --- /dev/null +++ b/reports/regression-triage/regression_triage.json @@ -0,0 +1,216298 @@ +{ + "schema_version": 1, + "generated_utc": "2026-09-18T20:51:29.086097+00:00", + "inputs": { + "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44", + "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8", + "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e", + "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c", + "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706", + "marker_map": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7", + "marker_policy": "317578b4b7fb1a9837b9a61fa85c2dc1ea6469eab4404b0435476ba4a12a1f84" + }, + "code_hashes": { + "cl_match.py": "4d447e860e8c500196b2859549b91dac9549afeaee236eedd5d63049ca7f7cec", + "phenotype.py": "6d3e7e59b884365fa48596fe1365b8630053b70a6259bb0e8f42413a55a9514a", + "marker_syntax.py": "e40620b1d804eec3c1f05251716092abd7f5a273e11ba91ce61a3345b1872ade", + "registry.py": "a225ca650e0278378566bf7134b3d8daa33dabee0c61c3d479d8affddf7a25fd", + "evaluation.py": "69dd3abd6c1bbf5a5ae453428269179a5cca8b991c1338bb51097dadf06555c5", + "audit.py": "4d2bfeff9583efd80c37d8fef51e06abb887410f4b9d88ce9b68bceace8bc9bb", + "candidate_index.py": "d4c58041cb4c4a4033d1457ae9f04d2e4d814a2d80469dd7aced2e696539e9a6", + "marker_resolution.py": "17feb8779da5a3d429c9d8326d26195cb66bb25cebf9cd005c79410d99efe050", + "regression_triage.py": "699b520311058f0fbd376cf1083e6c1a542608ed176178add35ba21b33d2d361" + }, + "factors": { + "A": "Add alias/allowed-PRO token evidence present in the enhanced index but absent in legacy.", + "P": "Remove legacy token evidence excluded by stricter policies, alias conflicts, synonym scope, or exact-PRO checks.", + "D": "Enable production semantic-clause deduplication using the fixed enhanced canonical alias map." + }, + "mode_order": "APD (0 disabled, 1 enabled)", + "candidate_count": 826, + "endpoint_checks": "passed", + "summary": { + "rank_improvements": 5, + "rank_regressions": 32, + "unchanged_ranks": 43, + "lost_top5": 3, + "gained_top5": 0, + "cases_sensitive_to_factor": { + "A": 0, + "P": 37, + "D": 0 + } + }, + "limitations": [ + "Provisional targets are not biological ground truth; this report does not validate them.", + "A/P separate added and removed index evidence, not independent biological mechanisms. Their identities are fixed by current policy.", + "D uses the same canonical map in every diagnostic run. Intermediate combinations are not supported production settings.", + "Tie bounds describe sensitivity to input order. Factor effects may interact; there is no unique additive causal attribution.", + "All cohort cases remain in denominators. Invalid profiles and targets absent from the fixed index are not silently excluded.", + "No lexical expansion, biological policy edits, scoring-weight changes, or network requests." + ], + "metrics": { + "000": { + "reviewed": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional": { + "cases": 80, + "mrr": 0.1524095320342756, + "statuses": { + "below_top_5": 42, + "hit_at_5": 19, + "invalid_profile": 6, + "target_not_in_index": 13 + }, + "cases_with_missing_targets": 15, + "top1_disqualified": 0, + "hit_at_1": 0.0875, + "hit_at_1_optimistic": 0.125, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.15, + "hit_at_3_optimistic": 0.2, + "hit_at_3_pessimistic": 0.0875, + 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null, + "missing_targets": [ + "CL:4030002" + ], + "candidates": [ + { + "cl_id": "CL:0001057", + "label": "myeloid dendritic cell, human", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null + }, + { + "cl_id": "CL:0002000", + "label": "Kit-positive erythroid progenitor cell", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null + }, + { + "cl_id": "CL:0002023", + "label": "CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell", + "score": 10, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 2, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null + }, + { + "cl_id": "CL:0002025", + "label": "CD34-positive, CD41-positive, CD42-negative megakaryocyte progenitor cell", + "score": 10, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 2, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null + }, + { + "cl_id": "CL:0000037", + "label": "hematopoietic stem cell", + "score": 9, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null + } + ], + "target_results": [], + "status": "target_not_in_index", + "note": "" + } + } + } + ] +} diff --git a/reports/regression-triage/regression_triage.md b/reports/regression-triage/regression_triage.md new file mode 100644 index 0000000..e9202c7 --- /dev/null +++ b/reports/regression-triage/regression_triage.md @@ -0,0 +1,187 @@ +# Matcher regression triage + +Generated: 2026-09-18T20:51:29.086097+00:00 + +## Findings + +```json +{ + "rank_improvements": 5, + "rank_regressions": 32, + "unchanged_ranks": 43, + "lost_top5": 3, + "gained_top5": 0, + "cases_sensitive_to_factor": { + "A": 0, + "P": 37, + "D": 0 + } +} +``` + +Factor sensitivity counts cases whose target rank changes in at least one paired toggle; it is not a sum of independent effects. + +## Controlled experiment + +Fixed candidate pool: 826 terms. Both diagnostic endpoints match production results. + +- A: Add alias/allowed-PRO token evidence present in the enhanced index but absent in legacy. +- P: Remove legacy token evidence excluded by stricter policies, alias conflicts, synonym scope, or exact-PRO checks. +- D: Enable production semantic-clause deduplication using the fixed enhanced canonical alias map. + +Modes are APD bit flags. These diagnostic switches do not change production settings. + +| Mode | Provisional cases | Top-1 | Top-3 | Top-5 | MRR | +|---|---:|---:|---:|---:|---:| +| 000 | 80 | 0.0875 | 0.1500 | 0.2375 | 0.1524 | +| 001 | 80 | 0.0875 | 0.1500 | 0.2375 | 0.1524 | +| 010 | 80 | 0.0375 | 0.1375 | 0.2000 | 0.1081 | +| 011 | 80 | 0.0375 | 0.1375 | 0.2000 | 0.1081 | +| 100 | 80 | 0.0875 | 0.1500 | 0.2375 | 0.1524 | +| 101 | 80 | 0.0875 | 0.1500 | 0.2375 | 0.1524 | +| 110 | 80 | 0.0375 | 0.1375 | 0.2000 | 0.1081 | +| 111 | 80 | 0.0375 | 0.1375 | 0.2000 | 0.1081 | + +Reviewed cohort results are separate in JSON; provisional metrics are not validated accuracy. + +## Cases crossing the top-five boundary + +### SOULCAP:SC000063 — alpha/beta and gamma/delta CD8+ T cells + +provisional / Broad; targets: CL:0000625. Lost top-five agreement. + +Ranks: 000=4; 001=4; 010=125; 011=125; 100=4; 101=4; 110=125; 111=125 + +- 000: rank 4; tie range 4–27; status hit_at_5. +- 100: rank 4; tie range 4–27; status hit_at_5. +- 010: rank 125; tie range 118–233; status below_top_5. +- 001: rank 4; tie range 4–27; status hit_at_5. +- 111: rank 125; tie range 118–233; status below_top_5. + +Target CL:0000625: score 9 → 5; required disqualification False → False. + +- Lost matched evidence: CD8+ +- Added matched evidence: +- New gaps: CD8+ +- New contradictions: + +Top candidates, legacy → enhanced: + +CL:0000900 (13), CL:0001050 (13), CL:0001203 (13), CL:0000625 (9), CL:0000794 (9) → CL:0002000 (17), CL:0002029 (17), CL:0002353 (17), CL:0001021 (16), CL:0000037 (13) + +Policy records and changed axiom rows are attached to each affected target and competitor in JSON. + +- New top competitor CL:0002000 (Kit-positive erythroid progenitor cell): rank 415 → 1; score 13 → 17; disqualified True → False; removed contradictions: CD3+; CD8+. +- New top competitor CL:0002029 (Fc-epsilon RIalpha-low mast cell progenitor): rank 416 → 2; score 13 → 17; disqualified True → False; removed contradictions: CD3+; CD8+. +- New top competitor CL:0002353 (fetal liver hematopoietic progenitor cell): rank 417 → 3; score 13 → 17; disqualified True → False; removed contradictions: CD3+; CD8+. + +### SOULCAP:SC000067 — CD8+ alpha/beta T cell + +provisional / Exact; targets: CL:0000625. Lost top-five agreement. + +Ranks: 000=4; 001=4; 010=124; 011=124; 100=4; 101=4; 110=124; 111=124 + +- 000: rank 4; tie range 4–27; status hit_at_5. +- 100: rank 4; tie range 4–27; status hit_at_5. +- 010: rank 124; tie range 118–231; status below_top_5. +- 001: rank 4; tie range 4–27; status hit_at_5. +- 111: rank 124; tie range 118–231; status below_top_5. + +Target CL:0000625: score 9 → 5; required disqualification False → False. + +- Lost matched evidence: CD8+ +- Added matched evidence: +- New gaps: CD8+ +- New contradictions: + +Top candidates, legacy → enhanced: + +CL:0000900 (13), CL:0001050 (13), CL:0001203 (13), CL:0000625 (9), CL:0000794 (9) → CL:0002000 (17), CL:0002029 (17), CL:0002353 (17), CL:0001021 (16), CL:0000037 (13) + +Policy records and changed axiom rows are attached to each affected target and competitor in JSON. + +- New top competitor CL:0002000 (Kit-positive erythroid progenitor cell): rank 415 → 1; score 13 → 17; disqualified True → False; removed contradictions: CD3+; CD8+. +- New top competitor CL:0002029 (Fc-epsilon RIalpha-low mast cell progenitor): rank 416 → 2; score 13 → 17; disqualified True → False; removed contradictions: CD3+; CD8+. +- New top competitor CL:0002353 (fetal liver hematopoietic progenitor cell): rank 417 → 3; score 13 → 17; disqualified True → False; removed contradictions: CD3+; CD8+. + +### SOULCAP:SC000073 — CD4-/CD8- gamma/delta T cell + +provisional / Exact; targets: CL:0000803. Lost top-five agreement. + +Ranks: 000=1; 001=1; 010=117; 011=117; 100=1; 101=1; 110=117; 111=117 + +- 000: rank 1; tie range 1–6; status hit_at_5. +- 100: rank 1; tie range 1–6; status hit_at_5. +- 010: rank 117; tie range 117–123; status below_top_5. +- 001: rank 1; tie range 1–6; status hit_at_5. +- 111: rank 117; tie range 117–123; status below_top_5. + +Target CL:0000803: score 10 → 6; required disqualification False → False. + +- Lost matched evidence: CD8- +- Added matched evidence: +- New gaps: CD8- +- New contradictions: + +Top candidates, legacy → enhanced: + +CL:0000803 (10), CL:0000924 (10), CL:0000928 (10), CL:0000929 (10), CL:0000930 (10) → CL:0002000 (17), CL:0002029 (17), CL:0002353 (17), CL:0001021 (16), CL:0002023 (14) + +Policy records and changed axiom rows are attached to each affected target and competitor in JSON. + +- New top competitor CL:0002000 (Kit-positive erythroid progenitor cell): rank 406 → 1; score 19 → 17; disqualified True → False; removed contradictions: CD3+. +- New top competitor CL:0002029 (Fc-epsilon RIalpha-low mast cell progenitor): rank 407 → 2; score 19 → 17; disqualified True → False; removed contradictions: CD3+. +- New top competitor CL:0002353 (fetal liver hematopoietic progenitor cell): rank 408 → 3; score 19 → 17; disqualified True → False; removed contradictions: CD3+. + +## All rank changes + +| Case | Direction | Legacy rank | Enhanced rank | +|---|---|---:|---:| +| provisional/SOULCAP:SC000003/Exact | regressed | 1 | 3 | +| provisional/SOULCAP:SC000004/Broad | regressed | 1 | 3 | +| provisional/SOULCAP:SC000005/Broad | regressed | 1 | 3 | +| provisional/SOULCAP:SC000007/Exact | regressed | 155 | 162 | +| provisional/SOULCAP:SC000008/Exact | regressed | 161 | 171 | +| provisional/SOULCAP:SC000009/Exact | improved | 26 | 25 | +| provisional/SOULCAP:SC000011/Exact | regressed | 18 | 20 | +| provisional/SOULCAP:SC000014/Exact | regressed | 34 | 36 | +| provisional/SOULCAP:SC000015/Exact | improved | 3 | 2 | +| provisional/SOULCAP:SC000021/Exact | regressed | 9 | 10 | +| provisional/SOULCAP:SC000026/Exact | improved | 31 | 6 | +| provisional/SOULCAP:SC000029/Exact | regressed | 43 | 48 | +| provisional/SOULCAP:SC000046/Broad | regressed | 34 | 87 | +| provisional/SOULCAP:SC000047/Broad | regressed | 42 | 127 | +| provisional/SOULCAP:SC000048/Broad | regressed | 63 | 119 | +| provisional/SOULCAP:SC000049/Broad | regressed | 34 | 87 | +| provisional/SOULCAP:SC000050/Broad | regressed | 70 | 120 | +| provisional/SOULCAP:SC000051/Broad | regressed | 63 | 114 | +| provisional/SOULCAP:SC000052/Broad | regressed | 42 | 120 | +| provisional/SOULCAP:SC000053/Broad | regressed | 54 | 115 | +| provisional/SOULCAP:SC000054/Broad | regressed | 34 | 87 | +| provisional/SOULCAP:SC000055/Broad | regressed | 70 | 120 | +| provisional/SOULCAP:SC000056/Broad | regressed | 63 | 114 | +| provisional/SOULCAP:SC000057/Broad | regressed | 42 | 120 | +| provisional/SOULCAP:SC000058/Broad | regressed | 54 | 120 | +| provisional/SOULCAP:SC000062/Broad | regressed | 9 | 70 | +| provisional/SOULCAP:SC000063/Broad | regressed | 4 | 125 | +| provisional/SOULCAP:SC000066/Exact | regressed | 9 | 69 | +| provisional/SOULCAP:SC000067/Exact | regressed | 4 | 124 | +| provisional/SOULCAP:SC000073/Exact | regressed | 1 | 117 | +| provisional/SOULCAP:SC000082/Exact | regressed | 238 | 246 | +| provisional/SOULCAP:SC000085/Exact | regressed | 239 | 247 | +| provisional/SOULCAP:SC000087/Exact | improved | 252 | 249 | +| provisional/SOULCAP:SC000089/Exact | regressed | 238 | 246 | +| provisional/SOULCAP:SC000092/Exact | improved | 253 | 250 | +| provisional/SOULCAP:SC000096/Exact | regressed | 238 | 246 | +| provisional/SOULCAP:SC000099/Exact | regressed | 239 | 247 | + +JSON contains all eight runs, expected-target and competitor axiom changes, source profiles, all paired factor effects, and hashes. TSV contains one row per case. + +## Interpretation limits + +- Provisional targets are not biological ground truth; this report does not validate them. +- A/P separate added and removed index evidence, not independent biological mechanisms. Their identities are fixed by current policy. +- D uses the same canonical map in every diagnostic run. Intermediate combinations are not supported production settings. +- Tie bounds describe sensitivity to input order. Factor effects may interact; there is no unique additive causal attribution. +- All cohort cases remain in denominators. Invalid profiles and targets absent from the fixed index are not silently excluded. +- No lexical expansion, biological policy edits, scoring-weight changes, or network requests. diff --git a/reports/regression-triage/regression_triage.tsv b/reports/regression-triage/regression_triage.tsv new file mode 100644 index 0000000..885627b --- /dev/null +++ b/reports/regression-triage/regression_triage.tsv @@ -0,0 +1,81 @@ +case_id label outcome lost_top5 gained_top5 000 001 010 011 100 101 110 111 +provisional/SOULCAP:SC000001/Exact Natural Killer Cell unchanged False False 6 6 6 6 6 6 6 6 +provisional/SOULCAP:SC000002/Exact Natural Killer Cell 2 unchanged False False 1 1 1 1 1 1 1 1 +provisional/SOULCAP:SC000003/Exact Cytotoxice Natural Killer Cell regressed False False 1 1 3 3 1 1 3 3 +provisional/SOULCAP:SC000004/Broad Natural Killer Cell 1 regressed False False 1 1 3 3 1 1 3 3 +provisional/SOULCAP:SC000005/Broad Natural Killer Cell 3 regressed False False 1 1 3 3 1 1 3 3 +provisional/SOULCAP:SC000006/Broad Innate Lymphoid Cell Progenitor unchanged False False 3 3 3 3 3 3 3 3 +provisional/SOULCAP:SC000007/Exact Innate Lymphoid Cell regressed False False 155 155 162 162 155 155 162 162 +provisional/SOULCAP:SC000008/Exact Innate Lymphoid Cell 1 regressed False False 161 161 171 171 161 161 171 171 +provisional/SOULCAP:SC000009/Exact Innate Lymphoid Cell 2 improved False False 26 26 25 25 26 26 25 25 +provisional/SOULCAP:SC000010/Exact Innate Lymphoid Cell 3 unchanged False False 118 118 118 118 118 118 118 118 +provisional/SOULCAP:SC000011/Exact Conventional Dendritic Cell regressed False False 18 18 20 20 18 18 20 20 +provisional/SOULCAP:SC000012/Exact Conventional Dendritic Cell 1 unchanged False False 2 2 2 2 2 2 2 2 +provisional/SOULCAP:SC000013/Exact Conventional Dendritic Cell 2 unchanged False False 2 2 2 2 2 2 2 2 +provisional/SOULCAP:SC000014/Exact Peripheral Dendritic Cell regressed False False 34 34 36 36 34 34 36 36 +provisional/SOULCAP:SC000015/Exact Basophil improved False False 3 3 2 2 3 3 2 2 +provisional/SOULCAP:SC000016/Exact Basophil unchanged False False 1 1 1 1 1 1 1 1 +provisional/SOULCAP:SC000017/Exact Monocyte unchanged False False +provisional/SOULCAP:SC000018/Exact Classical Monocyte unchanged False False +provisional/SOULCAP:SC000019/Exact Non-classical Monocyte unchanged False False +provisional/SOULCAP:SC000020/Exact Intermediate Monocyte unchanged False False +provisional/SOULCAP:SC000021/Exact Neutrophil regressed False False 9 9 10 10 9 9 10 10 +provisional/SOULCAP:SC000022/Exact Eosinophil unchanged False False 4 4 4 4 4 4 4 4 +provisional/SOULCAP:SC000023/Exact B cell unchanged False False +provisional/SOULCAP:SC000024/Exact Antibody Secreting Cell unchanged False False +provisional/SOULCAP:SC000025/Exact Plasmablast unchanged False False 3 3 3 3 3 3 3 3 +provisional/SOULCAP:SC000026/Exact Plasma Cell improved False False 31 31 6 6 31 31 6 6 +provisional/SOULCAP:SC000028/Broad Transitonal B cell 1 and 2 unchanged False False 1 1 1 1 1 1 1 1 +provisional/SOULCAP:SC000029/Exact Mature B cell regressed False False 43 43 48 48 43 43 48 48 +provisional/SOULCAP:SC000030/Exact Transitional B cell 3 unchanged False False 20 20 20 20 20 20 20 20 +provisional/SOULCAP:SC000031/Exact Naive B cell unchanged False False 5 5 5 5 5 5 5 5 +provisional/SOULCAP:SC000032/Exact Double Negative B cells unchanged False False 5 5 5 5 5 5 5 5 +provisional/SOULCAP:SC000033/Broad Double Negative B cell 1 unchanged False False 12 12 12 12 12 12 12 12 +provisional/SOULCAP:SC000034/Broad Double Negative B cell 2 unchanged False False 4 4 4 4 4 4 4 4 +provisional/SOULCAP:SC000035/Broad Double Negative B cell 3 unchanged False False 5 5 5 5 5 5 5 5 +provisional/SOULCAP:SC000036/Broad Double Negative B cell 4 unchanged False False 12 12 12 12 12 12 12 12 +provisional/SOULCAP:SC000037/Exact Memory B cell unchanged False False 39 39 39 39 39 39 39 39 +provisional/SOULCAP:SC000039/Exact Unswitched Memory B cell unchanged False False 13 13 13 13 13 13 13 13 +provisional/SOULCAP:SC000040/Exact IgM-only Memory B cell unchanged False False 33 33 33 33 33 33 33 33 +provisional/SOULCAP:SC000041/Exact Switched Memory B cell unchanged False False 14 14 14 14 14 14 14 14 +provisional/SOULCAP:SC000042/Exact IgA-Class Switched B cell unchanged False False 18 18 18 18 18 18 18 18 +provisional/SOULCAP:SC000043/Exact IgG-Class Switched B cell unchanged False False 18 18 18 18 18 18 18 18 +provisional/SOULCAP:SC000044/Exact IgE-Class Switched B cell unchanged False False 17 17 17 17 17 17 17 17 +provisional/SOULCAP:SC000045/Exact T lymphocyte unchanged False False +provisional/SOULCAP:SC000046/Broad CD56+ T cell regressed False False 34 34 87 87 34 34 87 87 +provisional/SOULCAP:SC000047/Broad CD56+ CD4 T cell regressed False False 42 42 127 127 42 42 127 127 +provisional/SOULCAP:SC000048/Broad CD56+ CD8 T cell regressed False False 63 63 119 119 63 63 119 119 +provisional/SOULCAP:SC000049/Broad CD56+ alpha/beta T cell regressed False False 34 34 87 87 34 34 87 87 +provisional/SOULCAP:SC000050/Broad CD56+ CD4+ alpha/beta T cell regressed False False 70 70 120 120 70 70 120 120 +provisional/SOULCAP:SC000051/Broad CD56+ CD8+ alpha/beta T cell regressed False False 63 63 114 114 63 63 114 114 +provisional/SOULCAP:SC000052/Broad CD56+ CD4+/CD8+ alpha/beta T cell regressed False False 42 42 120 120 42 42 120 120 +provisional/SOULCAP:SC000053/Broad CD56+ CD4-/CD8- alpha/beta T cell regressed False False 54 54 115 115 54 54 115 115 +provisional/SOULCAP:SC000054/Broad CD56+ gamma/delta T cell regressed False False 34 34 87 87 34 34 87 87 +provisional/SOULCAP:SC000055/Broad CD56+ CD4+ gamma/delta T cell regressed False False 70 70 120 120 70 70 120 120 +provisional/SOULCAP:SC000056/Broad CD56+ CD8+ gamma/delta T cell regressed False False 63 63 114 114 63 63 114 114 +provisional/SOULCAP:SC000057/Broad CD56+ CD4+/CD8+ gamma/delta T cell regressed False False 42 42 120 120 42 42 120 120 +provisional/SOULCAP:SC000058/Broad CD56+ CD8-/CD8- gamma/delta T cell regressed False False 54 54 120 120 54 54 120 120 +provisional/SOULCAP:SC000059/Exact Invariant Natural Killer T cell unchanged False False +provisional/SOULCAP:SC000060/Exact alpha/beta T cell unchanged False False +provisional/SOULCAP:SC000061/Exact gamma/delta T cell unchanged False False +provisional/SOULCAP:SC000062/Broad alpha/beta and gamma/delta CD4+ T cells regressed False False 9 9 70 70 9 9 70 70 +provisional/SOULCAP:SC000063/Broad alpha/beta and gamma/delta CD8+ T cells regressed True False 4 4 125 125 4 4 125 125 +provisional/SOULCAP:SC000064/Broad alpha/beta and gamma/delta CD4+ and CD8+ T cells unchanged False False +provisional/SOULCAP:SC000065/Broad alpha/beta and gamma/delta CD4- and CD8- T cells unchanged False False +provisional/SOULCAP:SC000066/Exact CD4+ alpha/beta T cell regressed False False 9 9 69 69 9 9 69 69 +provisional/SOULCAP:SC000067/Exact CD8+ alpha/beta T cell regressed True False 4 4 124 124 4 4 124 124 +provisional/SOULCAP:SC000068/Broad CD4+ and CD8+ alpha/beta T cell unchanged False False +provisional/SOULCAP:SC000069/Broad CD4- and CD8- alpha/beta T cell unchanged False False +provisional/SOULCAP:SC000070/Broad CD4+ gamma/delta T cell unchanged False False +provisional/SOULCAP:SC000071/Broad CD8+ gamma/delta T cell unchanged False False +provisional/SOULCAP:SC000072/Broad CD4+/CD8+ gamma/delta T cell unchanged False False +provisional/SOULCAP:SC000073/Exact CD4-/CD8- gamma/delta T cell regressed True False 1 1 117 117 1 1 117 117 +provisional/SOULCAP:SC000074/Exact Mucosal-associated Invariant T cell unchanged False False +provisional/SOULCAP:SC000082/Exact CD4+ central memory alpha/beta T cell regressed False False 238 238 246 246 238 238 246 246 +provisional/SOULCAP:SC000085/Exact CD8+ central memory alpha/beta T cell regressed False False 239 239 247 247 239 239 247 247 +provisional/SOULCAP:SC000087/Exact Naive alpha/beta and gamma/delta T cell improved False False 252 252 249 249 252 252 249 249 +provisional/SOULCAP:SC000089/Exact CD4+ naive alpha/beta T cell regressed False False 238 238 246 246 238 238 246 246 +provisional/SOULCAP:SC000092/Exact CD8+ naive alpha/beta T cell improved False False 253 253 250 250 253 253 250 250 +provisional/SOULCAP:SC000096/Exact CD4+ effector memory alpha/beta T cell regressed False False 238 238 246 246 238 238 246 246 +provisional/SOULCAP:SC000099/Exact CD8+ effector memory alpha/beta T cell regressed False False 239 239 247 247 239 239 247 247 +provisional/SOULCAP:SC000103/Exact CD4+ CD45RA+ effector memory alpha/beta T cell unchanged False False diff --git a/reports/resolver-refinement/README.md b/reports/resolver-refinement/README.md new file mode 100644 index 0000000..73eba39 --- /dev/null +++ b/reports/resolver-refinement/README.md @@ -0,0 +1,35 @@ +# Resolver refinement comparison — 2026-09-11 + +Both runs use the same 80 provisional cases, source profiles, and 826-term +marker-axiom index. Local lexical expansion is disabled. Neither run establishes +validated biological accuracy; the reviewed benchmark remains empty. + +| Metric | Legacy resolver | Explicit-policy resolver | +|---|---:|---:| +| Top-1 agreement | 7/80 | 3/80 | +| Top-3 agreement | 12/80 | 11/80 | +| Top-5 agreement | 19/80 | 16/80 | +| Mean reciprocal rank | 0.1524 | 0.1081 | + +This is a **regression in provisional retrieval agreement**, not a demonstrated +ranking improvement. The enhanced mode remains opt-in. Its stricter policy +withholds component/family/reagent assertions and incompatible protein identities; +it also fixes compatible duplicate alias ownership and double-counted clauses. +The generic comparison marks mode/input differences as non-equivalent by design. + +The [per-marker audit](../marker_resolution_audit.md) reports six normalized +marker groups gaining axiom links and eleven losing links. None of the 80 +mapping-level support status categories changed, although their detailed evidence +and candidate rankings can differ. Inspect the JSON evidence before accepting +any representation or ranking change. + +- [Legacy evaluation](legacy/matcher_evaluation.md) +- [Enhanced evaluation](enhanced/matcher_evaluation.md) +- [Enhanced mapping review](enhanced.sssom.md) +- [Enhanced audit dashboard](audit/audit_dashboard.html) +- `pre_refinement_evaluation.json` preserves the prior combined lexical/alias run; + it is not the controlled legacy comparator used above. + +Source data, existing marker identifiers, mapping decisions, and the default +SSSOM export were not changed. Enhanced SSSOM and its input-hash manifest are +separate artifacts in this directory. diff --git a/reports/resolver-refinement/audit/audit_dashboard.html b/reports/resolver-refinement/audit/audit_dashboard.html new file mode 100644 index 0000000..ca18c10 --- /dev/null +++ b/reports/resolver-refinement/audit/audit_dashboard.html @@ -0,0 +1,87 @@ + + + + + +SOULCAP · Mapping audit + + + +
    SOULCAP × Cell Ontology

    Mapping audit

    A local review of mapping coverage, phenotype evidence, and source consistency.

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    Matcher evaluation

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    Marker evidence

    Counts refer to proposal records, not distinct cell types.

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    Review status

    Curator review and marker support are separate evidence sources.

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    + +
    +

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    Select a column heading to sort.
    +
    +

    How to interpret this audit

      Markdown summaryDownload audit JSON
      +

      Generated by soulcap-audit. Re-run the command to refresh this snapshot. No external scripts, fonts, or services are used.

      +
      + + + + diff --git a/reports/resolver-refinement/audit/audit_data.json b/reports/resolver-refinement/audit/audit_data.json new file mode 100644 index 0000000..812e77a --- /dev/null +++ b/reports/resolver-refinement/audit/audit_data.json @@ -0,0 +1,151903 @@ +{ + "schema_version": 1, + "resolution_mode": "explicit_marker_policy", + "resolution_inputs": { + "marker_mappings\\marker_protein_gene.csv": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7", + "marker_mappings\\marker_resolution.tsv": "317578b4b7fb1a9837b9a61fa85c2dc1ea6469eab4404b0435476ba4a12a1f84" + }, + "generated_utc": "2026-09-11T04:13:52.853363+00:00", + "summary": { + "registered_entities": 127, + "source_rows": 127, + "mapping_records": 80, + "source_entities_with_proposals": 80, + "source_entities_without_proposals": 47, + "unresolved_source_rows": 0, + "uncertain_proposals": 8, + "invalid_marker_cells": 26, + "invalid_profile_rows": 23, + "evidence_statuses": { + "partial_support": 54, + "invalid_profile": 6, + "no_marker_support": 20 + }, + "review_statuses": { + "needs_review": 80 + }, + "marker_statuses": { + "mapped": 55, + "no_gene_mapping": 3, + "documented_nonprotein_or_reagent": 3, + "documented_complex_or_family": 10, + "source_artifact_needs_review": 4 + }, + "gap_records": 17, + "finding_severities": { + "error": 23, + "warning": 8, + "info": 81 + } + }, + "sources": [ + { + "subject_id": "SOULCAP:SC000001", + "sheet_row": 2, + "abbreviation": "NK", + "label": "Natural Killer Cell", + "parent": "", + "specimen": "", + "errors": [], + "profile_changed": false, + "tokens": [ + "CD11c", + "CD123", + "CD127", + "CD14", + "CD15", + "CD19", + "CD3", + "CD33", + "CD34", + "CD45", + "CD56", + "CD64", + "CD66b", + "HLA-DR" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "", + "Parent": "", + "Abbreviation": "NK", + "Full Name": "Natural Killer Cell", + "synonym": "", + "Type of Match": "Exact", + "OLS CL identifier": "", + "Required exclusion": "(CD14-|CD33-|CD64-) CD34- CD3- CD19- ", + "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD123-", + "Required phenotypic markers": "live/ CD45+ CD56+/hi CD127-", + "Ideal phenotypic markers": "[CD33-|CD64-]", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000001", + "legacy_subject_id": "SOULCAP:NK", + "abbreviation": "NK", + "subject_label": "Natural Killer Cell", + "cl_id": "CL:0000623", + "cl_label": "natural killer cell", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the defining positive CD56 marker is absent — a documented CL gap (cl_term_issues.md), not confirmed here.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001889", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "True" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "CD34:negative" + }, + { + "column": "Required exclusion", + "clause": "CD3:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD123:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD56:positive OR CD56:high)" + }, + { + "column": "Required phenotypic markers", + "clause": "CD127:negative" + }, + { + "column": "Ideal phenotypic markers", + "clause": "(CD33:negative OR CD64:negative)" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD20", + "CD3E" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "77102d43f9abced8b3efd2e11ad6d91a492bf101ebdb061a1fd67aaaa275c58c", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "", + "resolution_evidence": [ + { + "sense": "negative", + "pr": "PR:000001002", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001289", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD20", + "tokens": [ + "CD20" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001289", + "tokens": [ + "CD20" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001889", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD14", + "tokens": [ + "CD14" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001889", + "tokens": [ + "CD14" + ] + } + ] + } + ] + }, + "registry_row": 2, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000002", + "sheet_row": 3, + "abbreviation": "NK2", + "label": "Natural Killer Cell 2", + "parent": "NK", + "specimen": "", + "errors": [], + "profile_changed": false, + "tokens": [ + "CD11c", + "CD123", + "CD127", + "CD14", + "CD15", + "CD16", + "CD19", + "CD3", + "CD33", + "CD34", + "CD45", + "CD56", + "CD57", + "CD64", + "CD66b", + "HLA-DR" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "", + "Parent": "NK", + "Abbreviation": "NK2", + "Full Name": "Natural Killer Cell 2", + "synonym": "", + "Type of Match": "Surface Only (SO)", + "OLS CL identifier": "", + "Required exclusion": "(CD14-|CD33-|CD64-) CD34- CD3- CD19- ", + "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD123-", + "Required phenotypic markers": "live/ CD45+ CD56hi CD127- CD16-/lo CD57- ", + "Ideal phenotypic markers": "", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000002", + "legacy_subject_id": "SOULCAP:NK2", + "abbreviation": "NK2", + "subject_label": "Natural Killer Cell 2", + "cl_id": "CL:0000938", + "cl_label": "CD16-negative, CD56-bright natural killer cell, human", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001889", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD56:high", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "RO:0015015", + "sense": "high", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "CD34:negative" + }, + { + "column": "Required exclusion", + "clause": "CD3:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD123:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD127:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD16:negative OR CD16:low)" + }, + { + "column": "Required phenotypic markers", + "clause": "CD57:negative" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD20", + "CD3E", + "CD84" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "a9e05f94e58b7fb289cf2f39044e4e9725e26448a3cd5681102b4c6d61ce1b72", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "", + "resolution_evidence": [ + { + "sense": "high", + "pr": "PR:000001024", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001002", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001289", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD20", + "tokens": [ + "CD20" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001289", + "tokens": [ + "CD20" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001483", + "asserted": "True", + "paths": [] + }, + { + "sense": "negative", + "pr": "PR:000001889", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD14", + "tokens": [ + "CD14" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001889", + "tokens": [ + "CD14" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000002015", + "asserted": "True", + "paths": [] + }, + { + "sense": "positive", + "pr": "PR:000001319", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD84", + "tokens": [ + "CD84" + ] + } + ] + } + ] + }, + "registry_row": 3, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000003", + "sheet_row": 4, + "abbreviation": "CTNK", + "label": "Cytotoxice Natural Killer Cell", + "parent": "NK", + "specimen": "", + "errors": [], + "profile_changed": false, + "tokens": [ + "CD11c", + "CD123", + "CD127", + "CD14", + "CD15", + "CD16", + "CD19", + "CD3", + "CD33", + "CD34", + "CD45", + "CD56", + "CD64", + "CD66b", + "HLA-DR" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "", + "Parent": "NK", + "Abbreviation": "CTNK", + "Full Name": "Cytotoxice Natural Killer Cell", + "synonym": "", + "Type of Match": "SO and Cytokine", + "OLS CL identifier": "", + "Required exclusion": "(CD14-|CD33-|CD64-) CD34- CD3- CD19- ", + "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD123-", + "Required phenotypic markers": "live/ CD45+ CD56+/hi CD127- CD16+", + "Ideal phenotypic markers": "", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000003", + "legacy_subject_id": "SOULCAP:CTNK", + "abbreviation": "CTNK", + "subject_label": "Cytotoxic Natural Killer Cell", + "cl_id": "CL:0000939", + "cl_label": "CD16-positive, CD56-dim natural killer cell, human", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001889", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "(CD56:positive OR CD56:high)", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "RO:0015016", + "sense": "low", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "CD34:negative" + }, + { + "column": "Required exclusion", + "clause": "CD3:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD123:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD127:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD16:positive" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD20", + "CD3E" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "0c64cf7d98b4bdcf4e679fa78c81aaf8ca3f51838a33d7de99e5082953f626e4", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "", + "resolution_evidence": [ + { + "sense": "low", + "pr": "PR:000001024", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001002", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001289", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD20", + "tokens": [ + "CD20" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001289", + "tokens": [ + "CD20" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001889", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD14", + "tokens": [ + "CD14" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001889", + "tokens": [ + "CD14" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000002015", + "asserted": "True", + "paths": [] + }, + { + "sense": "positive", + "pr": "PR:000001483", + "asserted": "True", + "paths": [] + } + ] + }, + "registry_row": 4, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000004", + "sheet_row": 5, + "abbreviation": "NK1", + "label": "Natural Killer Cell 1", + "parent": "CTNK", + "specimen": "", + "errors": [], + "profile_changed": false, + "tokens": [ + "CD11c", + "CD123", + "CD127", + "CD14", + "CD15", + "CD16", + "CD19", + "CD3", + "CD33", + "CD34", + "CD45", + "CD56", + "CD57", + "CD64", + "CD66b", + "HLA-DR" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "", + "Parent": "CTNK", + "Abbreviation": "NK1", + "Full Name": "Natural Killer Cell 1", + "synonym": "", + "Type of Match": "SO and TF", + "OLS CL identifier": "", + "Required exclusion": "(CD14-|CD33-|CD64-) CD34- CD3- CD19- ", + "Ideal exclusion": "[HLA-DR+ CD11chi]- (CD15-|CD66b-) CD123-", + "Required phenotypic markers": "live/ CD45+ CD56+ CD127- CD16+ CD57-", + "Ideal phenotypic markers": "", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000004", + "legacy_subject_id": "SOULCAP:NK1", + "abbreviation": "NK1", + "subject_label": "Natural Killer Cell 1", + "cl_id": "CL:0000939", + "cl_label": "CD16-positive, CD56-dim natural killer cell, human", + "match_type": "Broad", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "CL does not distinguish CD57 status within this subtype.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + 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Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "84c375696035c6d7c9de16751255259e8e834ac9287f201f13ed821a7bfdda5d", + "sheet_cl_id": "CL:0000576", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 18, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000018", + "sheet_row": 19, + "abbreviation": "CMo", + "label": "Classical Monocyte", + "parent": "Mono", + "specimen": "WB and PBMC", + "errors": [ + { + "column": "Required exclusion", + "expression": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", + "error": "unexpected ')' in group" + } + ], + "profile_changed": false, + "tokens": [ + "CD14", + "CD15", + "CD16", + "CD3", + "CD33", + "CD45", + "CD64", + "CD66b" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "WB and PBMC", + "Parent": "Mono", + "Abbreviation": "CMo", + "Full Name": "Classical Monocyte", + "synonym": "", + "Type of Match": "Exact", + "OLS CL identifier": "CL:0000860", + "Required exclusion": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", + "Ideal exclusion": "[CD15hi|CD66b+]- CD3- ", + "Required phenotypic markers": "live/ CD45+ CD14+ CD16-", + "Ideal phenotypic markers": "(CD64+|CD33+)", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000018", + "legacy_subject_id": "SOULCAP:CMo", + "abbreviation": "CMo", + "subject_label": "Classical Monocyte", + "cl_id": "CL:0000860", + "cl_label": "classical monocyte", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "sheet_confirmed", + "note": "OAK-verified exact label match. 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Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "4c9436c977492d1ccea66ec05a22925897e6235162061f41dbf8e4e09ac940e3", + "sheet_cl_id": "CL:0000860", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 19, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000019", + "sheet_row": 20, + "abbreviation": "NCMo", + "label": "Non-classical Monocyte", + "parent": "Mono", + "specimen": "WB and PBMC", + "errors": [ + { + "column": "Required exclusion", + "expression": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", + "error": "unexpected ')' in group" + } + ], + "profile_changed": false, + "tokens": [ + "CD14", + "CD15", + "CD16", + "CD3", + "CD33", + "CD45", + "CD64", + "CD66b" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "WB and PBMC", + "Parent": "Mono", + "Abbreviation": "NCMo", + "Full Name": "Non-classical Monocyte", + "synonym": "", + "Type of Match": "Exact", + "OLS CL identifier": "CL:0000875", + "Required exclusion": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", + "Ideal exclusion": "[CD15hi|CD66b+]- CD3- ", + "Required phenotypic markers": "live/ CD45+ CD14lo/- CD16+ ", + "Ideal phenotypic markers": "(CD64+/-|CD33+)", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000019", + "legacy_subject_id": "SOULCAP:NCMo", + "abbreviation": "NCMo", + "subject_label": "Non-classical Monocyte", + "cl_id": "CL:0000875", + "cl_label": "non-classical monocyte", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "sheet_confirmed", + "note": "OAK-verified exact label match. CL:0000875 asserts only CX3CR1 and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "2ccb34f2fc50e1126131986d487fe42c67bdcacc16330874b67750b017cbeab0", + "sheet_cl_id": "CL:0000875", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 20, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000020", + "sheet_row": 21, + "abbreviation": "IntMo", + "label": "Intermediate Monocyte", + "parent": "Mono", + "specimen": "WB and PBMC", + "errors": [ + { + "column": "Required exclusion", + "expression": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", + "error": "unexpected ')' in group" + } + ], + "profile_changed": false, + "tokens": [ + "CD14", + "CD15", + "CD16", + "CD3", + "CD33", + "CD45", + "CD64", + "CD66b" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "WB and PBMC", + "Parent": "Mono", + "Abbreviation": "IntMo", + "Full Name": "Intermediate Monocyte", + "synonym": "", + "Type of Match": "Exact", + "OLS CL identifier": "CL:0002393", + "Required exclusion": "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)", + "Ideal exclusion": "[CD15hi|CD66b+]- CD3- ", + "Required phenotypic markers": "live/ CD45+ CD14+ CD16hi ", + "Ideal phenotypic markers": "(CD64+|CD33+)", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000020", + "legacy_subject_id": "SOULCAP:IntMo", + "abbreviation": "IntMo", + "subject_label": "Intermediate Monocyte", + "cl_id": "CL:0002393", + "cl_label": "intermediate monocyte", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "sheet_confirmed", + "note": "OAK-verified exact label match. CL:0002393 asserts only CCR2 (CD192, negative) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "aa79f8b8798d9b79b35cd87edef7133ca5b824636f3f05d0dfe1b990d87d97c3", + "sheet_cl_id": "CL:0002393", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 21, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000021", + "sheet_row": 22, + "abbreviation": "Neut", + "label": "Neutrophil", + "parent": "", + "specimen": "WB and PBMC", + "errors": [], + "profile_changed": false, + "tokens": [ + "CD11c", + "CD123", + "CD14", + "CD15", + "CD16", + "CD19", + "CD193", + "CD3", + "CD33", + "CD45", + "CD56", + "CD64", + "CD66b", + "HLA-DR" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "WB and PBMC", + "Parent": "", + "Abbreviation": "Neut", + "Full Name": "Neutrophil", + "synonym": "", + "Type of Match": "Exact", + "OLS CL identifier": "", + "Required exclusion": "CD3- CD56- CD14lo/- CD123-", + "Ideal exclusion": "CD19- [HLA-DR+ CD11chi]-", + "Required phenotypic markers": "live/ CD45+ (CD15hi|CD66b+) CD193- CD16hi", + "Ideal phenotypic markers": "(CD64-|CD33+)", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000021", + "legacy_subject_id": "SOULCAP:Neutrophil", + "abbreviation": "Neutrophil", + "subject_label": "Neutrophil", + "cl_id": "CL:0000775", + "cl_label": "neutrophil", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "(CD15:high OR CD66B:positive)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001332", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "False" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "CD3:negative" + }, + { + "column": "Required exclusion", + "clause": "(CD14:low OR CD14:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD123:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD193:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD16:high" + }, + { + "column": "Ideal phenotypic markers", + "clause": "(CD64:negative OR CD33:positive)" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD11B", + "CD3E", + "CD67", + "CD87", + "CD8A" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "6a7f385e7dd5e22ba96aeedb4aa46fb2e6ab411bc046567fac5d0aeb3ea7f587", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "", + "resolution_evidence": [ + { + "sense": "negative", + "pr": "PR:000001002", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001024", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001084", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD8A", + "tokens": [ + "CD8A" + ] + }, + { + "via": "exact_alias", + "source_token": "CD8A", + "tokens": [ + "CD8A" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001012", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD11", + "tokens": [ + "CD11" + ] + }, + { + "via": "exact_alias", + "source_token": "CD11B", + "tokens": [ + "CD11B" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001332", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD66B", + "tokens": [ + "CD66B" + ] + }, + { + "via": "exact_alias", + "source_token": "CD67", + "tokens": [ + "CD67" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001332", + "tokens": [ + "CD66B" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001479", + "asserted": "True", + "paths": [] + }, + { + "sense": "positive", + "pr": "PR:000001879", + "asserted": "True", + "paths": [] + }, + { + "sense": "positive", + "pr": "PR:000001969", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD87", + "tokens": [ + "CD87" + ] + } + ] + } + ] + }, + "registry_row": 22, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000022", + "sheet_row": 23, + "abbreviation": "Eos", + "label": "Eosinophil", + "parent": "", + "specimen": "WB", + "errors": [], + "profile_changed": false, + "tokens": [ + "CD11c", + "CD123", + "CD14", + "CD15", + "CD16", + "CD19", + "CD193", + "CD3", + "CD33", + "CD45", + "CD56", + "CD64", + "CD66b", + "HLA-DR" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "WB", + "Parent": "", + "Abbreviation": "Eos", + "Full Name": "Eosinophil", + "synonym": "", + "Type of Match": "Exact", + "OLS CL identifier": "", + "Required exclusion": "CD3- CD56- CD14lo/- CD123-", + "Ideal exclusion": "CD19- [HLA-DR+ CD11chi]-", + "Required phenotypic markers": "live/ CD45+ (CD15hi|CD66b+) CD193+ CD16- ", + "Ideal phenotypic markers": "(CD64-|CD33+)", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000022", + "legacy_subject_id": "SOULCAP:Eosinophil", + "abbreviation": "Eosinophil", + "subject_label": "Eosinophil", + "cl_id": "CL:0000771", + "cl_label": "eosinophil", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "CD193 (CCR3) positive is directly asserted (not inferred) on CL:0000771, precisely matching SOULCAP's defining CD193+ requirement — one of the stronger marker-confirmed matches in this set.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "(CD15:high OR CD66B:positive)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001332", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD193:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001255", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "CD3:negative" + }, + { + "column": "Required exclusion", + "clause": "(CD14:low OR CD14:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD123:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD16:negative" + }, + { + "column": "Ideal phenotypic markers", + "clause": "(CD64:negative OR CD33:positive)" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD11B", + "CD191", + "CD3E", + "CD44", + "CD67", + "CD69", + "CD87", + "CD8A", + "CD9", + "CDW44" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "874205816800964db5c591f96652bdac9d28acef6907b20275b346c4e2cc3524", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "", + "resolution_evidence": [ + { + "sense": "negative", + "pr": "PR:000001002", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001024", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001084", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD8A", + "tokens": [ + "CD8A" + ] + }, + { + "via": "exact_alias", + "source_token": "CD8A", + "tokens": [ + "CD8A" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001012", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD11", + "tokens": [ + "CD11" + ] + }, + { + "via": "exact_alias", + "source_token": "CD11B", + "tokens": [ + "CD11B" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001254", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD191", + "tokens": [ + "CD191" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001255", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD193", + "tokens": [ + "CD193" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001255", + "tokens": [ + "CD193" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001307", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD44", + "tokens": [ + "CD44" + ] + }, + { + "via": "exact_alias", + "source_token": "CDW44", + "tokens": [ + "CDW44" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001332", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD66B", + "tokens": [ + "CD66B" + ] + }, + { + "via": "exact_alias", + "source_token": "CD67", + "tokens": [ + "CD67" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001332", + "tokens": [ + "CD66B" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001343", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD69", + "tokens": [ + "CD69" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001969", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD87", + "tokens": [ + "CD87" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000005178", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD9", + "tokens": [ + "CD9" + ] + } + ] + } + ] + }, + "registry_row": 23, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000023", + "sheet_row": 24, + "abbreviation": "B cell", + "label": "B cell", + "parent": "", + "specimen": "", + "errors": [], + "profile_changed": false, + "tokens": [ + "CD11c", + "CD123", + "CD127", + "CD14", + "CD15", + "CD16", + "CD19", + "CD20", + "CD3", + "CD33", + "CD45", + "CD56", + "CD64", + "CD66b", + "HLA-DR" + ], + "profile": { + "Ready for OLS": "yes", + "WB or PBMC": "", + "Parent": "", + "Abbreviation": "B cell", + "Full Name": "B cell", + "synonym": "", + "Type of Match": "Exact", + "OLS CL identifier": "", + "Required exclusion": "(CD14-|CD33-|CD64-) CD3- CD56-", + "Ideal exclusion": "CD127- CD16- (CD15-|CD66b-) [HLA-DR+ CD11chi]- CD123-", + "Required phenotypic markers": "live/ CD45+ (CD20+|CD19+)", + "Ideal phenotypic markers": "CD20+", + "Nomenclature Notes": "", + "CL Mapping Notes": "" + }, + "mappings": [ + { + "subject_id": "SOULCAP:SC000023", + "legacy_subject_id": "SOULCAP:B_cell", + "abbreviation": "B cell", + "subject_label": "B cell", + "cl_id": "CL:0000236", + "cl_label": "B cell", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "OLS4 REST search returned zero hits for this exact query; found instead via OAK. CL:0000236 has no marker axioms recorded.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "no_marker_support", + "matched": [], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "(CD14:negative OR CD33:negative OR CD64:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD3:negative" + }, + { + "column": "Required exclusion", + "clause": "CD56:negative" + }, + { + "column": "Ideal exclusion", + "clause": "CD127:negative" + }, + { + "column": "Ideal exclusion", + "clause": "CD16:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Ideal exclusion", + "clause": "CD123:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "(CD20:positive OR CD19:positive)" + }, + { + "column": "Ideal phenotypic markers", + "clause": "CD20:positive" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "a0300906ff3acd98f58b8ebb9443d973b9710447d8ab4736aa111ae172b1df78", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "", + "resolution_evidence": [] + }, + "registry_row": 24, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + } + ], + "mapping_status": "proposed" + }, + { + "subject_id": "SOULCAP:SC000024", + "sheet_row": 25, + "abbreviation": "ASC", + "label": "Antibody Secreting Cell", + "parent": "", + "specimen": 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"CD14" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001889", + "tokens": [ + "CD14" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001865", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD123", + "tokens": [ + "CD123" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001865", + "tokens": [ + "CD123" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000002015", + "asserted": "False", + "paths": [] + } + ] + }, + "registry_row": 15, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000015", + "legacy_subject_id": "SOULCAP:Basophil_(PBMC)", + "abbreviation": "Basophil (PBMC)", + "subject_label": "Basophil", + "cl_id": "CL:0000043", + "cl_label": "mature basophil", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "", + "lexical_evidence": 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CD303:negative)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001255", + "relation": "RO:0015015", + "sense": "high", + "asserted": "False" + }, + { + "pr": "PR:000007431", + "relation": "RO:0015015", + "sense": "high", + "asserted": "False" + } + ] + }, + { + "column": "Ideal phenotypic markers", + "clause": "FCER1A:positive", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000007431", + "relation": "RO:0015015", + "sense": "high", + "asserted": "False" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "CD3:negative" + }, + { + "column": "Ideal exclusion", + "clause": "CD127:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD14:negative" + }, + { + "column": "Ideal exclusion", + "clause": "CD16:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Ideal phenotypic markers", + "clause": "HLA-DR:negative" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD11B", + "CD154", + "CD203C", + "CD3E", + "CD40", + "CD40LG", + "CD67", + "CD87", + "CD8A" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "6ae772d0622c8988d15f047ef4570ab309a99edce893328ef9c815aec7e0c1b3", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "", + "resolution_evidence": [ + { + "sense": "high", + "pr": "PR:000001255", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD193", + "tokens": [ + "CD193" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001255", + "tokens": [ + "CD193" + ] + } + ] + }, + { + "sense": "high", + "pr": "PR:000001865", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD123", + "tokens": [ + "CD123" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001865", + "tokens": [ + "CD123" + ] + } + ] + }, + { + "sense": "high", + "pr": "PR:000007431", + "asserted": "False", + "paths": [ + { + "via": "pro_id", + "pr": "PR:000007431", + "tokens": [ + "FCER1A" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001002", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001024", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001084", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD8A", + "tokens": [ + "CD8A" + ] + }, + { + "via": "exact_alias", + "source_token": "CD8A", + "tokens": [ + "CD8A" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001012", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD11", + "tokens": [ + "CD11" + ] + }, + { + "via": "exact_alias", + "source_token": "CD11B", + "tokens": [ + "CD11B" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001332", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD66B", + "tokens": [ + "CD66B" + ] + }, + { + "via": "exact_alias", + "source_token": "CD67", + "tokens": [ + "CD67" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001332", + "tokens": [ + "CD66B" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001344", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD203C", + "tokens": [ + "CD203C" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001950", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD154", + "tokens": [ + "CD154" + ] + }, + { + "via": "exact_alias", + "source_token": "CD40", + "tokens": [ + "CD40" + ] + }, + { + "via": "exact_alias", + "source_token": "CD40LG", + "tokens": [ + "CD40LG" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001969", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD87", + "tokens": [ + "CD87" + ] + } + ] + } + ] + }, + "registry_row": 16, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000016", + "legacy_subject_id": "SOULCAP:Basophil_(WB)", + "abbreviation": "Basophil (WB)", + "subject_label": "Basophil", + "cl_id": "CL:0000043", + "cl_label": "mature basophil", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Ideal exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD193:positive", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001255", + "relation": "RO:0015015", + "sense": "high", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD123:positive", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001865", + "relation": "RO:0015015", + "sense": "high", + "asserted": "False" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "CD3:negative" + }, + { + "column": "Required exclusion", + "clause": "(CD15:negative OR CD66B:negative)" + }, + { + "column": "Ideal exclusion", + "clause": "CD127:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD11B", + "CD154", + "CD203C", + "CD3E", + "CD40", + "CD40LG", + "CD67", + "CD87", + "CD8A", + "FCER1A" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "b5e758e040d00ac23abae3ebc35dddae9abe67be32d404eb68c7345159c4132c", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "", + "resolution_evidence": [ + { + "sense": "high", + "pr": "PR:000001255", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD193", + "tokens": [ + "CD193" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001255", + "tokens": [ + "CD193" + ] + } + ] + }, + { + "sense": "high", + "pr": "PR:000001865", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD123", + "tokens": [ + "CD123" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001865", + "tokens": [ + "CD123" + ] + } + ] + }, + { + "sense": "high", + "pr": "PR:000007431", + "asserted": "False", + "paths": [ + { + "via": "pro_id", + "pr": "PR:000007431", + "tokens": [ + "FCER1A" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001002", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001024", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001084", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD8A", + "tokens": [ + "CD8A" + ] + }, + { + "via": "exact_alias", + "source_token": "CD8A", + "tokens": [ + "CD8A" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001012", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD11", + "tokens": [ + "CD11" + ] + }, + { + "via": "exact_alias", + "source_token": "CD11B", + "tokens": [ + "CD11B" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001332", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD66B", + "tokens": [ + "CD66B" + ] + }, + { + "via": "exact_alias", + "source_token": "CD67", + "tokens": [ + "CD67" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001332", + "tokens": [ + "CD66B" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001344", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD203C", + "tokens": [ + "CD203C" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001950", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD154", + "tokens": [ + "CD154" + ] + }, + { + "via": "exact_alias", + "source_token": "CD40", + "tokens": [ + "CD40" + ] + }, + { + "via": "exact_alias", + "source_token": "CD40LG", + "tokens": [ + "CD40LG" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001969", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD87", + "tokens": [ + "CD87" + ] + } + ] + } + ] + }, + "registry_row": 17, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000017", + "legacy_subject_id": "SOULCAP:Mono", + "abbreviation": "Mono", + "subject_label": "Monocyte", + "cl_id": "CL:0000576", + "cl_label": "monocyte", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "sheet_confirmed", + "note": "OAK-verified exact label match (OLS4 was timing out); CL:0000576 has no marker axioms recorded at all. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "84c375696035c6d7c9de16751255259e8e834ac9287f201f13ed821a7bfdda5d", + "sheet_cl_id": "CL:0000576", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 18, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000018", + "legacy_subject_id": "SOULCAP:CMo", + "abbreviation": "CMo", + "subject_label": "Classical Monocyte", + "cl_id": "CL:0000860", + "cl_label": "classical monocyte", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "sheet_confirmed", + "note": "OAK-verified exact label match. CL:0000860 asserts only CCR2 (CD192) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "4c9436c977492d1ccea66ec05a22925897e6235162061f41dbf8e4e09ac940e3", + "sheet_cl_id": "CL:0000860", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 19, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000019", + "legacy_subject_id": "SOULCAP:NCMo", + "abbreviation": "NCMo", + "subject_label": "Non-classical Monocyte", + "cl_id": "CL:0000875", + "cl_label": "non-classical monocyte", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "sheet_confirmed", + "note": "OAK-verified exact label match. CL:0000875 asserts only CX3CR1 and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "2ccb34f2fc50e1126131986d487fe42c67bdcacc16330874b67750b017cbeab0", + "sheet_cl_id": "CL:0000875", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 20, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000020", + "legacy_subject_id": "SOULCAP:IntMo", + "abbreviation": "IntMo", + "subject_label": "Intermediate Monocyte", + "cl_id": "CL:0002393", + "cl_label": "intermediate monocyte", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "sheet_confirmed", + "note": "OAK-verified exact label match. CL:0002393 asserts only CCR2 (CD192, negative) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID.", + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "evidence": { + "status": "invalid_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [ + "Required exclusion: unexpected ')' in group" + ], + "lexical_evidence": "Legacy note records OAK verification; no query artifact retained.", + "literature_evidence": "", + "curator_evidence": "Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "aa79f8b8798d9b79b35cd87edef7133ca5b824636f3f05d0dfe1b990d87d97c3", + "sheet_cl_id": "CL:0002393", + "sheet_confirmation": "agrees", + "sheet_notes": "" + }, + "registry_row": 21, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000021", + "legacy_subject_id": "SOULCAP:Neutrophil", + "abbreviation": "Neutrophil", + "subject_label": "Neutrophil", + "cl_id": "CL:0000775", + "cl_label": "neutrophil", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "(CD15:high OR CD66B:positive)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001332", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "False" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "CD3:negative" + }, + { + "column": "Required exclusion", + "clause": "(CD14:low OR CD14:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD123:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD193:negative" + }, + { + "column": "Required phenotypic markers", + "clause": "CD16:high" + }, + { + "column": "Ideal phenotypic markers", + "clause": "(CD64:negative OR CD33:positive)" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD11B", + "CD3E", + "CD67", + "CD87", + "CD8A" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "6a7f385e7dd5e22ba96aeedb4aa46fb2e6ab411bc046567fac5d0aeb3ea7f587", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "", + "resolution_evidence": [ + { + "sense": "negative", + "pr": "PR:000001002", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001024", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001084", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD8A", + "tokens": [ + "CD8A" + ] + }, + { + "via": "exact_alias", + "source_token": "CD8A", + "tokens": [ + "CD8A" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001012", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD11", + "tokens": [ + "CD11" + ] + }, + { + "via": "exact_alias", + "source_token": "CD11B", + "tokens": [ + "CD11B" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001332", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD66B", + "tokens": [ + "CD66B" + ] + }, + { + "via": "exact_alias", + "source_token": "CD67", + "tokens": [ + "CD67" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001332", + "tokens": [ + "CD66B" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001479", + "asserted": "True", + "paths": [] + }, + { + "sense": "positive", + "pr": "PR:000001879", + "asserted": "True", + "paths": [] + }, + { + "sense": "positive", + "pr": "PR:000001969", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD87", + "tokens": [ + "CD87" + ] + } + ] + } + ] + }, + "registry_row": 22, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000022", + "legacy_subject_id": "SOULCAP:Eosinophil", + "abbreviation": "Eosinophil", + "subject_label": "Eosinophil", + "cl_id": "CL:0000771", + "cl_label": "eosinophil", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "", + "note": "CD193 (CCR3) positive is directly asserted (not inferred) on CL:0000771, precisely matching SOULCAP's defining CD193+ requirement — one of the stronger marker-confirmed matches in this set.", + "lexical_evidence": "", + "literature_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + "curator_evidence": "", + "evidence": { + "status": "partial_support", + "matched": [ + { + "column": "Required exclusion", + "clause": "CD56:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001024", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Ideal exclusion", + "clause": "CD19:negative", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001002", + "relation": "CL:4030046", + "sense": "negative", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "(CD15:high OR CD66B:positive)", + "assertion": "inferred", + "axioms": [ + { + "pr": "PR:000001332", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "False" + } + ] + }, + { + "column": "Required phenotypic markers", + "clause": "CD193:positive", + "assertion": "direct", + "axioms": [ + { + "pr": "PR:000001255", + "relation": "RO:0002104", + "sense": "positive", + "asserted": "True" + } + ] + } + ], + "contradictions": [], + "gaps": [ + { + "column": "Required exclusion", + "clause": "CD3:negative" + }, + { + "column": "Required exclusion", + "clause": "(CD14:low OR CD14:negative)" + }, + { + "column": "Required exclusion", + "clause": "CD123:negative" + }, + { + "column": "Ideal exclusion", + "clause": "(HLA-DR:not:positive OR CD11C:not:high)" + }, + { + "column": "Required phenotypic markers", + "clause": "CD45:positive" + }, + { + "column": "Required phenotypic markers", + "clause": "CD16:negative" + }, + { + "column": "Ideal phenotypic markers", + "clause": "(CD64:negative OR CD33:positive)" + } + ], + "ideal_conflicts": [], + "untested_cl_markers": [ + "CD11", + "CD11B", + "CD191", + "CD3E", + "CD44", + "CD67", + "CD69", + "CD87", + "CD8A", + "CD9", + "CDW44" + ], + "errors": [], + "lexical_evidence": "", + "literature_evidence": "", + "curator_evidence": "", + "review_status": "needs_review", + "resolution_mode": "explicit_marker_policy", + "profile_sha256": "874205816800964db5c591f96652bdac9d28acef6907b20275b346c4e2cc3524", + "sheet_cl_id": "", + "sheet_confirmation": "not_recorded", + "sheet_notes": "", + "resolution_evidence": [ + { + "sense": "negative", + "pr": "PR:000001002", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001024", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001084", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD8A", + "tokens": [ + "CD8A" + ] + }, + { + "via": "exact_alias", + "source_token": "CD8A", + "tokens": [ + "CD8A" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001012", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD11", + "tokens": [ + "CD11" + ] + }, + { + "via": "exact_alias", + "source_token": "CD11B", + "tokens": [ + "CD11B" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001254", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD191", + "tokens": [ + "CD191" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001255", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD193", + "tokens": [ + "CD193" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001255", + "tokens": [ + "CD193" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001307", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD44", + "tokens": [ + "CD44" + ] + }, + { + "via": "exact_alias", + "source_token": "CDW44", + "tokens": [ + "CDW44" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001332", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD66B", + "tokens": [ + "CD66B" + ] + }, + { + "via": "exact_alias", + "source_token": "CD67", + "tokens": [ + "CD67" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001332", + "tokens": [ + "CD66B" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001343", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD69", + "tokens": [ + "CD69" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001969", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD87", + "tokens": [ + "CD87" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000005178", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD9", + "tokens": [ + "CD9" + ] + } + ] + } + ] + }, + "registry_row": 23, + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md", + "href": "../../candidate_cl_mappings_narrative.md" + } + ] + }, + { + "subject_id": "SOULCAP:SC000023", + "legacy_subject_id": "SOULCAP:B_cell", + "abbreviation": "B cell", + "subject_label": "B cell", + "cl_id": "CL:0000236", + "cl_label": "B cell", + "match_type": "Exact", + "uncertain": false, + "review_status": "needs_review", + "evidence_override": "no_marker_axiom", + "note": "OLS4 REST search returned zero hits for this exact query; found instead via OAK. 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this is not a biological sign-off.", + "resolution_policy": { + "marker_token": "CD38", + "representation": "single_protein", + "protein_resolution": "allow", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD38", + "registry_sha256": "a9443ead57bee08f430cd3737fc54621c649a971ee7e05530042406994fbbfb3" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "CD4", + "affected_subjects": [ + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000121" + ], + "records": [ + { + "marker_token": "CD4", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:000001004", + "pro_label": "CD4 molecule", + "uniprot_id": "P01730", + "uniprot_label": "CD4 molecule", + "gene_symbol": "CD4", + "hgnc_id": "HGNC:1678", + "ncbi_gene_id": "", + "mapping_method": "cl_pro_tsv", + "confidence": "high", + "evidence": "reports/cl_pro_relationships.tsv", + "notes": "" + } + ], + "pro_ids": [ + "PR:000001004" + ], + "gene_symbols": [ + "CD4" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; 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this is not a biological sign-off.", + "resolution_policy": { + "marker_token": "CD45", + "representation": "single_protein", + "protein_resolution": "allow", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD45", + "registry_sha256": "c2144181df41b433bc4c8b7710bfda4122607d87ade0ed2d33ff4865a4b3c49d" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "CD56", + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000006", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000011", + "SOULCAP:SC000012", + "SOULCAP:SC000013", + "SOULCAP:SC000014", + "SOULCAP:SC000015", + "SOULCAP:SC000016", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058" + ], + "records": [ + { + "marker_token": "CD56", + "marker_synonyms": "", + "source_columns": "Ideal exclusion|Required exclusion|Required phenotypic markers", + "pro_id": "PR:000001024", + "pro_label": "neural cell adhesion molecule 1", + "uniprot_id": "P13591", + "uniprot_label": "neural cell adhesion molecule 1", + "gene_symbol": "NCAM1", + "hgnc_id": "HGNC:7656", + "ncbi_gene_id": "", + "mapping_method": "cl_pro_tsv", + "confidence": "high", + "evidence": "reports/cl_pro_relationships.tsv", + "notes": "" + } + ], + "pro_ids": [ + "PR:000001024" + ], + "gene_symbols": [ + "NCAM1" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "resolution_policy": { + "marker_token": "CD56", + "representation": "single_protein", + "protein_resolution": "allow", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD56", + "registry_sha256": "b51d188a6fdfada2e42569c7553233a5f7625ae2976ba24724e84a95db6ceff1" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "CD57", + "affected_subjects": [ + "SOULCAP:SC000002", + "SOULCAP:SC000004", + "SOULCAP:SC000005" + ], + "records": [ + { + "marker_token": "CD57", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "ols4", + "confidence": "low", + "evidence": "https://www.ebi.ac.uk/ols4/api/search?q=CD57&ontology=pr", + "notes": "B3GAT1 / HNK-1 epitope; 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this is not a biological sign-off.", + "resolution_policy": { + "marker_token": "CD64", + "representation": "single_protein", + "protein_resolution": "allow", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD64", + "registry_sha256": "46571d20d73b5ef77ec5c7be28beda3c94890e33c17faf4904e285b294e2db47" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "CD66b", + "affected_subjects": [ + "SOULCAP:SC000001", + "SOULCAP:SC000002", + "SOULCAP:SC000003", + "SOULCAP:SC000004", + "SOULCAP:SC000005", + "SOULCAP:SC000007", + "SOULCAP:SC000008", + "SOULCAP:SC000009", + "SOULCAP:SC000010", + "SOULCAP:SC000014", + "SOULCAP:SC000015", + "SOULCAP:SC000016", + "SOULCAP:SC000017", + "SOULCAP:SC000018", + "SOULCAP:SC000019", + "SOULCAP:SC000020", + "SOULCAP:SC000021", + "SOULCAP:SC000022", + "SOULCAP:SC000023", + "SOULCAP:SC000024", + "SOULCAP:SC000025", + "SOULCAP:SC000026", + "SOULCAP:SC000028", + "SOULCAP:SC000029", + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000037", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044", + "SOULCAP:SC000045", + "SOULCAP:SC000046", + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000059", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000074", + "SOULCAP:SC000075", + "SOULCAP:SC000076", + "SOULCAP:SC000077", + "SOULCAP:SC000078", + "SOULCAP:SC000079", + "SOULCAP:SC000080", + "SOULCAP:SC000081", + "SOULCAP:SC000082", + "SOULCAP:SC000083", + "SOULCAP:SC000084", + "SOULCAP:SC000085", + "SOULCAP:SC000086", + "SOULCAP:SC000087", + "SOULCAP:SC000088", + "SOULCAP:SC000089", + "SOULCAP:SC000090", + "SOULCAP:SC000091", + "SOULCAP:SC000092", + "SOULCAP:SC000093", + "SOULCAP:SC000094", + "SOULCAP:SC000095", + "SOULCAP:SC000096", + "SOULCAP:SC000097", + "SOULCAP:SC000098", + "SOULCAP:SC000099", + "SOULCAP:SC000100", + "SOULCAP:SC000101", + "SOULCAP:SC000102", + "SOULCAP:SC000103", + "SOULCAP:SC000104", + "SOULCAP:SC000105", + "SOULCAP:SC000106", + "SOULCAP:SC000107", + "SOULCAP:SC000108", + "SOULCAP:SC000109", + "SOULCAP:SC000110", + "SOULCAP:SC000111", + "SOULCAP:SC000112", + "SOULCAP:SC000113", + "SOULCAP:SC000114", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000120", + "SOULCAP:SC000121", + "SOULCAP:SC000122", + "SOULCAP:SC000123", + "SOULCAP:SC000124", + "SOULCAP:SC000125", + "SOULCAP:SC000126", + "SOULCAP:SC000127" + ], + "records": [ + { + "marker_token": "CD66b", + "marker_synonyms": "", + "source_columns": "Ideal exclusion|Required exclusion|Required phenotypic markers", + "pro_id": "PR:000001332", + "pro_label": "cell adhesion molecule CEACAM8", + "uniprot_id": "P31997", + "uniprot_label": "cell adhesion molecule CEACAM8", + "gene_symbol": "CEACAM8", + "hgnc_id": "HGNC:1820", + "ncbi_gene_id": "", + "mapping_method": "cl_pro_tsv", + "confidence": "high", + "evidence": "reports/cl_pro_relationships.tsv", + "notes": "" + } + ], + "pro_ids": [ + "PR:000001332" + ], + "gene_symbols": [ + "CEACAM8" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "resolution_policy": { + "marker_token": "CD66B", + "representation": "single_protein", + "protein_resolution": "allow", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#CD66b", + "registry_sha256": "42305fda07fd524b609244d79f171598c6b1b1b879466170789a47c30bc9033a" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "CD8", + "affected_subjects": [ + "SOULCAP:SC000047", + "SOULCAP:SC000048", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000062", + "SOULCAP:SC000063", + "SOULCAP:SC000064", + "SOULCAP:SC000065", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000115", + "SOULCAP:SC000116", + "SOULCAP:SC000117", + "SOULCAP:SC000118", + "SOULCAP:SC000119", + "SOULCAP:SC000121" + ], + "records": [ + { + "marker_token": "CD8", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:000001084", + "pro_label": "T-cell surface glycoprotein CD8 alpha chain", + "uniprot_id": "P01732", + "uniprot_label": "T-cell surface glycoprotein CD8 alpha chain", + "gene_symbol": "CD8A", + "hgnc_id": "HGNC:1706", + "ncbi_gene_id": "", + "mapping_method": "cl_pro_tsv", + "confidence": "high", + "evidence": "reports/cl_pro_relationships.tsv", + "notes": "" + } + ], + "pro_ids": [ + "PR:000001084" + ], + "gene_symbols": [ + "CD8A" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; 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No single PR ID or UniProt accession covers all isotypes." + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "resolution_policy": { + "marker_token": "IGA", + "representation": "protein_family", + "protein_resolution": "withhold", + "rationale": "Registry notes document a non-single-protein or pan-marker representation.", + "source_ref": "marker_mappings/marker_protein_gene.csv#IgA", + "registry_sha256": "61ac45fc138bab46fc31d71e42363d20de18a9585ff4717fb02702cbb03c6685" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "IgD", + "affected_subjects": [ + "SOULCAP:SC000030", + "SOULCAP:SC000031", + "SOULCAP:SC000032", + "SOULCAP:SC000033", + "SOULCAP:SC000034", + "SOULCAP:SC000035", + "SOULCAP:SC000036", + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044" + ], + "records": [ + { + "marker_token": "IgD", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "Immunoglobulin heavy-chain class D; encoded by IGHD. 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No single PR ID or UniProt accession." + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "resolution_policy": { + "marker_token": "IGE", + "representation": "protein_family", + "protein_resolution": "withhold", + "rationale": "Registry notes document a non-single-protein or pan-marker representation.", + "source_ref": "marker_mappings/marker_protein_gene.csv#IgE", + "registry_sha256": "67b95e398fb1095e4c4a380091f0dae23dec9025456defdd9d0f5f254740da2e" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "IgG", + "affected_subjects": [ + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044" + ], + "records": [ + { + "marker_token": "IgG", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "Immunoglobulin heavy-chain class G; encoded by IGHG1/IGHG2/IGHG3/IGHG4 gene family. No single PR ID or UniProt accession covers all subclasses." + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "resolution_policy": { + "marker_token": "IGG", + "representation": "protein_family", + "protein_resolution": "withhold", + "rationale": "Registry notes document a non-single-protein or pan-marker representation.", + "source_ref": "marker_mappings/marker_protein_gene.csv#IgG", + "registry_sha256": "c51e1dd6ae671fd9db387be6d0a26fdce6645e0f6a00d14891c0922708a941e7" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "IgM", + "affected_subjects": [ + "SOULCAP:SC000038", + "SOULCAP:SC000039", + "SOULCAP:SC000040", + "SOULCAP:SC000041", + "SOULCAP:SC000042", + "SOULCAP:SC000043", + "SOULCAP:SC000044" + ], + "records": [ + { + "marker_token": "IgM", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "Immunoglobulin heavy-chain class M; encoded by IGHM. No single PR ID or UniProt accession." + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "resolution_policy": { + "marker_token": "IGM", + "representation": "protein_family", + "protein_resolution": "withhold", + "rationale": "Registry notes document a non-single-protein or pan-marker representation.", + "source_ref": "marker_mappings/marker_protein_gene.csv#IgM", + "registry_sha256": "fc17667826dd44b6b08bd4cb257f3d4fa23fdbf477c3da79386cb427b0d2f88d" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "MR1", + "affected_subjects": [], + "records": [ + { + "marker_token": "MR1", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:Q95460", + "pro_label": "major histocompatibility complex class I-related protein 1 (human)", + "uniprot_id": "Q95460", + "uniprot_label": "major histocompatibility complex, class I-related", + "gene_symbol": "MR1", + "hgnc_id": "HGNC:4975", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "high", + "evidence": "https://rest.genenames.org/fetch/symbol/MR1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_Q95460", + "notes": "MHC-related protein 1; also used as 'MR1 tetramer' reagent for MAIT cell detection" + } + ], + "pro_ids": [ + "PR:Q95460" + ], + "gene_symbols": [ + "MR1" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "resolution_policy": { + "marker_token": "MR1", + "representation": "unresolved", + "protein_resolution": "withhold", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required.", + "source_ref": "marker_mappings/marker_protein_gene.csv#MR1", + "registry_sha256": "96c5bf22b0be1d144cf60f175968b19c1485c64c4866d4a109f636a9c9af703d" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCR", + "affected_subjects": [ + "SOULCAP:SC000122", + "SOULCAP:SC000123" + ], + "records": [ + { + "marker_token": "TCR", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers|Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "", + "notes": "pan-TCR marker; not specific to a single gene" + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "resolution_policy": { + "marker_token": "TCR", + "representation": "protein_family", + "protein_resolution": "withhold", + "rationale": "Registry notes document a non-single-protein or pan-marker representation.", + "source_ref": "marker_mappings/marker_protein_gene.csv#TCR", + "registry_sha256": "9a617aa9a766194134020d7afa5feca696fc92cb187377eb72b2bb326d40cae7" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRVa24", + "affected_subjects": [], + "records": [ + { + "marker_token": "TCRVa24", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0A0B4J240", + "pro_label": "T cell receptor alpha variable 10 (human)", + "uniprot_id": "A0A0B4J240", + "uniprot_label": "T cell receptor alpha variable 10 (human)", + "gene_symbol": "TRAV10", + "hgnc_id": "HGNC:12103", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRAV10; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J240", + "notes": "IMGT nomenclature: TRAV10" + } + ], + "pro_ids": [ + "PR:A0A0B4J240" + ], + "gene_symbols": [ + "TRAV10" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "resolution_policy": { + "marker_token": "TCRVA24", + "representation": "single_protein", + "protein_resolution": "allow", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVa24", + "registry_sha256": "f81c80eeaa4d2de919813822e062fe2e4210b8a025bd76ebbad546bdd0936315" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRVa24-Ja18", + "affected_subjects": [], + "records": [ + { + "marker_token": "TCRVa24-Ja18", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0A0B4J240", + "pro_label": "T cell receptor alpha variable 10 (human)", + "uniprot_id": "A0A0B4J240", + "uniprot_label": "T cell receptor alpha variable 10 (human)", + "gene_symbol": "TRAV10", + "hgnc_id": "HGNC:12103", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRAV10; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J240", + "notes": "Invariant iNKT TCR chain; two-gene marker TRAV10+TRAJ18; gene_symbol populated with TRAV10 as primary TRAV gene" + } + ], + "pro_ids": [ + "PR:A0A0B4J240" + ], + "gene_symbols": [ + "TRAV10" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "resolution_policy": { + "marker_token": "TCRVA24-JA18", + "representation": "complex", + "protein_resolution": "withhold", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.", + "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVa24-Ja18", + "registry_sha256": "aad1afeeb19ea59d1c85741576656d0bf629f1500ac86d389d008e5adc327020" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRVa7.2", + "affected_subjects": [], + "records": [ + { + "marker_token": "TCRVa7.2", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0A0B4J238", + "pro_label": "T cell receptor alpha variable 1-2 (human)", + "uniprot_id": "A0A0B4J238", + "uniprot_label": "T cell receptor alpha variable 1-2 (human)", + "gene_symbol": "TRAV1-2", + "hgnc_id": "HGNC:12102", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRAV1-2; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J238", + "notes": "IMGT nomenclature: TRAV1-2" + } + ], + "pro_ids": [ + "PR:A0A0B4J238" + ], + "gene_symbols": [ + "TRAV1-2" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "resolution_policy": { + "marker_token": "TCRVA7.2", + "representation": "single_protein", + "protein_resolution": "allow", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVa7.2", + "registry_sha256": "1917c912d25db47ddf31fdee753f0093f18dfb1fcf080f5a2dcc9a53cdd490a5" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRVb11", + "affected_subjects": [], + "records": [ + { + "marker_token": "TCRVb11", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0A075B6N4", + "pro_label": "T cell receptor beta variable 25-1 (human)", + "uniprot_id": "A0A075B6N4", + "uniprot_label": "T cell receptor beta variable 25-1 (human)", + "gene_symbol": "TRBV25-1", + "hgnc_id": "HGNC:12205", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRBV25-1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A075B6N4", + "notes": "IMGT nomenclature: TRBV25-1" + } + ], + "pro_ids": [ + "PR:A0A075B6N4" + ], + "gene_symbols": [ + "TRBV25-1" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "resolution_policy": { + "marker_token": "TCRVB11", + "representation": "single_protein", + "protein_resolution": "allow", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVb11", + "registry_sha256": "3b0361d975e31467580067f5d17823f53d425f9d2b5ef44745fee1aba08ca941" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRVd2", + "affected_subjects": [ + "SOULCAP:SC000122" + ], + "records": [ + { + "marker_token": "TCRVd2", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0JD36", + "pro_label": "T cell receptor delta variable 2 (human)", + "uniprot_id": "A0JD36", + "uniprot_label": "T cell receptor delta variable 2 (human)", + "gene_symbol": "TRDV2", + "hgnc_id": "HGNC:12263", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRDV2; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0JD36", + "notes": "IMGT nomenclature: TRDV2" + } + ], + "pro_ids": [ + "PR:A0JD36" + ], + "gene_symbols": [ + "TRDV2" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "resolution_policy": { + "marker_token": "TCRVD2", + "representation": "single_protein", + "protein_resolution": "allow", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVd2", + "registry_sha256": "5fb0b153ecc148621ec7c97ffea4618dcaf12f3f62d1642acfb303c5179ef2ec" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRVg9", + "affected_subjects": [ + "SOULCAP:SC000122" + ], + "records": [ + { + "marker_token": "TCRVg9", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:Q99603", + "pro_label": "T cell receptor gamma variable 9 (human)", + "uniprot_id": "Q99603", + "uniprot_label": "T cell receptor gamma variable 9 (human)", + "gene_symbol": "TRGV9", + "hgnc_id": "HGNC:12295", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRGV9; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_Q99603", + "notes": "IMGT nomenclature: TRGV9" + } + ], + "pro_ids": [ + "PR:Q99603" + ], + "gene_symbols": [ + "TRGV9" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "resolution_policy": { + "marker_token": "TCRVG9", + "representation": "single_protein", + "protein_resolution": "allow", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVg9", + "registry_sha256": "9318391135642e811b2781de7a9be4cc58f52c5f21dbfe8a0d316f3619f245f1" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRab", + "affected_subjects": [ + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000122" + ], + "records": [ + { + "marker_token": "TCRab", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "", + "notes": "pan-αβ TCR marker; recognises assembled αβ heterodimer" + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "resolution_policy": { + "marker_token": "TCRAB", + "representation": "complex", + "protein_resolution": "withhold", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.", + "source_ref": "marker_mappings/marker_protein_gene.csv#TCRab", + "registry_sha256": "db65f2afbe24e19148fe8039a5a7df5983c5e9d0963d9cff9dec278958e33382" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRgd", + "affected_subjects": [ + "SOULCAP:SC000049", + "SOULCAP:SC000050", + "SOULCAP:SC000051", + "SOULCAP:SC000052", + "SOULCAP:SC000053", + "SOULCAP:SC000054", + "SOULCAP:SC000055", + "SOULCAP:SC000056", + "SOULCAP:SC000057", + "SOULCAP:SC000058", + "SOULCAP:SC000060", + "SOULCAP:SC000061", + "SOULCAP:SC000066", + "SOULCAP:SC000067", + "SOULCAP:SC000068", + "SOULCAP:SC000069", + "SOULCAP:SC000070", + "SOULCAP:SC000071", + "SOULCAP:SC000072", + "SOULCAP:SC000073", + "SOULCAP:SC000122" + ], + "records": [ + { + "marker_token": "TCRgd", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "", + "notes": "pan-γδ TCR marker; recognises assembled γδ heterodimer" + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_complex_or_family", + "status_reason": "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + "resolution_policy": { + "marker_token": "TCRGD", + "representation": "complex", + "protein_resolution": "withhold", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence.", + "source_ref": "marker_mappings/marker_protein_gene.csv#TCRgd", + "registry_sha256": "49ec8f76a1338a63effb3e88e3c748f97f2753861e47ad476c1f4a96384b40ec" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "TCRva24", + "affected_subjects": [], + "records": [ + { + "marker_token": "TCRva24", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0A0B4J240", + "pro_label": "T cell receptor alpha variable 10 (human)", + "uniprot_id": "A0A0B4J240", + "uniprot_label": "T cell receptor alpha variable 10 (human)", + "gene_symbol": "TRAV10", + "hgnc_id": "HGNC:12103", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRAV10; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J240", + "notes": "Likely duplicate of TCRVa24 (different capitalisation) — data quality issue; mapped identically to TCRVa24 / TRAV10" + } + ], + "pro_ids": [ + "PR:A0A0B4J240" + ], + "gene_symbols": [ + "TRAV10" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "resolution_policy": { + "marker_token": "TCRVA24", + "representation": "single_protein", + "protein_resolution": "allow", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#TCRVa24", + "registry_sha256": "f81c80eeaa4d2de919813822e062fe2e4210b8a025bd76ebbad546bdd0936315" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "Tetramer", + "affected_subjects": [], + "records": [ + { + "marker_token": "Tetramer", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "generic reagent term; not a specific protein" + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "documented_nonprotein_or_reagent", + "status_reason": "Registry notes document a non-protein gate or reagent; a single gene/PRO mapping may not apply.", + "resolution_policy": { + "marker_token": "TETRAMER", + "representation": "reagent_gate", + "protein_resolution": "withhold", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein.", + "source_ref": "marker_mappings/marker_protein_gene.csv#Tetramer", + "registry_sha256": "2f3894386ee2918f58d53b858eebc8e09729f16699a8f9d6faab2d5900495227" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "V", + "affected_subjects": [ + "SOULCAP:SC000122", + "SOULCAP:SC000123" + ], + "records": [ + { + "marker_token": "V", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers|Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "likely parsing artifact from multi-word TCR gene name — data quality issue; see reports/marker_validation.md" + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "source_artifact_needs_review", + "status_reason": "Registry notes describe a possible parsing artifact; source clarification is needed.", + "resolution_policy": { + "marker_token": "V", + "representation": "unresolved", + "protein_resolution": "withhold", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.", + "source_ref": "marker_mappings/marker_protein_gene.csv#V", + "registry_sha256": "610b267c4ba493d65f1528fb008a91bcab513fe39cd039617f4ba0313b50fa61" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "VB11", + "affected_subjects": [], + "records": [ + { + "marker_token": "VB11", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0A075B6N4", + "pro_label": "T cell receptor beta variable 25-1 (human)", + "uniprot_id": "A0A075B6N4", + "uniprot_label": "T cell receptor beta variable 25-1 (human)", + "gene_symbol": "TRBV25-1", + "hgnc_id": "HGNC:12205", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRBV25-1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A075B6N4", + "notes": "Duplicate of TCRVb11 (uppercase) — data quality issue; same mapping as TCRVb11 / TRBV25-1" + } + ], + "pro_ids": [ + "PR:A0A075B6N4" + ], + "gene_symbols": [ + "TRBV25-1" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "resolution_policy": { + "marker_token": "VB11", + "representation": "single_protein", + "protein_resolution": "allow", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#VB11", + "registry_sha256": "6642023972a293e8a24efa26bb504964bc55c6f68d25a2186fd5609b89465e9f" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "Vb11", + "affected_subjects": [], + "records": [ + { + "marker_token": "Vb11", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0A075B6N4", + "pro_label": "T cell receptor beta variable 25-1 (human)", + "uniprot_id": "A0A075B6N4", + "uniprot_label": "T cell receptor beta variable 25-1 (human)", + "gene_symbol": "TRBV25-1", + "hgnc_id": "HGNC:12205", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRBV25-1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A075B6N4", + "notes": "Duplicate of TCRVb11 — data quality issue; same mapping as TCRVb11 / TRBV25-1" + } + ], + "pro_ids": [ + "PR:A0A075B6N4" + ], + "gene_symbols": [ + "TRBV25-1" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "resolution_policy": { + "marker_token": "VB11", + "representation": "single_protein", + "protein_resolution": "allow", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#VB11", + "registry_sha256": "6642023972a293e8a24efa26bb504964bc55c6f68d25a2186fd5609b89465e9f" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "Vd1", + "affected_subjects": [], + "records": [ + { + "marker_token": "Vd1", + "marker_synonyms": "", + "source_columns": "Required phenotypic markers", + "pro_id": "PR:A0A1B0GX56", + "pro_label": "T cell receptor delta variable 1 (human)", + "uniprot_id": "A0A1B0GX56", + "uniprot_label": "T cell receptor delta variable 1 (human)", + "gene_symbol": "TRDV1", + "hgnc_id": "HGNC:12262", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "medium", + "evidence": "https://rest.genenames.org/fetch/symbol/TRDV1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A1B0GX56", + "notes": "IMGT nomenclature: TRDV1" + } + ], + "pro_ids": [ + "PR:A0A1B0GX56" + ], + "gene_symbols": [ + "TRDV1" + ], + "ncbi_gene_ids": [], + "identifier_status": "mapped", + "status": "mapped", + "status_reason": "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + "resolution_policy": { + "marker_token": "VD1", + "representation": "single_protein", + "protein_resolution": "allow", + "rationale": "Retains the registry's single PRO representation; computational identity only, not biological sign-off.", + "source_ref": "marker_mappings/marker_protein_gene.csv#Vd1", + "registry_sha256": "adcc38bd179456a5c30cbddcb322a4cec7c64ca04f5c0f5ca79aef2703ee25fc" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "delta", + "affected_subjects": [], + "records": [ + { + "marker_token": "delta", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers|Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "likely parsing artifact from multi-word TCR gene name — data quality issue; see reports/marker_validation.md" + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "source_artifact_needs_review", + "status_reason": "Registry notes describe a possible parsing artifact; source clarification is needed.", + "resolution_policy": { + "marker_token": "DELTA", + "representation": "unresolved", + "protein_resolution": "withhold", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.", + "source_ref": "marker_mappings/marker_protein_gene.csv#delta", + "registry_sha256": "83aed236bb5fcdc28afafd651c50af0e2bc053b7d9f64f979e47e39e66751b5e" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "delta1", + "affected_subjects": [ + "SOULCAP:SC000122", + "SOULCAP:SC000123" + ], + "records": [ + { + "marker_token": "delta1", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "likely parsing artifact from multi-word TCR gene name — data quality issue; see reports/marker_validation.md" + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "source_artifact_needs_review", + "status_reason": "Registry notes describe a possible parsing artifact; source clarification is needed.", + "resolution_policy": { + "marker_token": "DELTA1", + "representation": "unresolved", + "protein_resolution": "withhold", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.", + "source_ref": "marker_mappings/marker_protein_gene.csv#delta1", + "registry_sha256": "5b366a2c0a5c2f3a19355bb66e4ad0f88c172aa901c577aa9b16acff92294995" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + }, + { + "marker_token": "gamma", + "affected_subjects": [], + "records": [ + { + "marker_token": "gamma", + "marker_synonyms": "", + "source_columns": "Ideal phenotypic markers|Required phenotypic markers", + "pro_id": "", + "pro_label": "", + "uniprot_id": "", + "uniprot_label": "", + "gene_symbol": "", + "hgnc_id": "", + "ncbi_gene_id": "", + "mapping_method": "manual", + "confidence": "low", + "evidence": "", + "notes": "likely parsing artifact from multi-word TCR gene name — data quality issue; see reports/marker_validation.md" + } + ], + "pro_ids": [], + "gene_symbols": [], + "ncbi_gene_ids": [], + "identifier_status": "no_pro_mapping", + "status": "source_artifact_needs_review", + "status_reason": "Registry notes describe a possible parsing artifact; source clarification is needed.", + "resolution_policy": { + "marker_token": "GAMMA", + "representation": "unresolved", + "protein_resolution": "withhold", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification.", + "source_ref": "marker_mappings/marker_protein_gene.csv#gamma", + "registry_sha256": "dc9b95fd067723b54cfdb2e4fcf8948e571b2dfc83b0fa6dc407a4bcf6f402be" + }, + "classification_basis": "Local registry identifiers and notes; not externally verified." + } + ], + "gaps": [ + { + "soulcap_abbreviation": "NK", + "soulcap_full_name": "Natural Killer Cell", + "gap_type": "cl_axiom_gap", + "description": "CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the field-standard defining positive marker CD56 is absent from its own axioms, though present on its child terms.", + "related_cl_ids": "CL:0000623", + "evidence": "reports/cl_pro_relationships.md; reports/literature/nk_cell_markers.md; reports/cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-22", + "association": "exact_abbreviation", + "subject_ids": [ + "SOULCAP:SC000001" + ], + "candidate_subject_ids": [ + "SOULCAP:SC000001" + ], + "evidence_links": [ + { + "label": "reports/cl_pro_relationships.md", + "href": "../../cl_pro_relationships.md" + }, + { + "label": "reports/literature/nk_cell_markers.md", + "href": "../../literature/nk_cell_markers.md" + }, + { + "label": "reports/cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623", + "href": "../../cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623" + } + ] + }, + { + "soulcap_abbreviation": "NK1 / NK3", + "soulcap_full_name": "Natural Killer Cell 1 / Natural Killer Cell 3", + "gap_type": "cl_axiom_gap", + "description": "CL:0000939 (CD16-positive, CD56-dim NK cell, human) does not distinguish CD57-negative (NK1) from CD57-positive (NK3) substates; both SOULCAP rows currently map to the same CL term at Broad match type.", + "related_cl_ids": "CL:0000939", + "evidence": "reports/candidate_cl_mappings_narrative.md#ctnk--nk1--nk3--cytotoxic-natural-killer-cell-cd16-positive", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-22", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#ctnk--nk1--nk3--cytotoxic-natural-killer-cell-cd16-positive", + "href": "../../candidate_cl_mappings_narrative.md#ctnk--nk1--nk3--cytotoxic-natural-killer-cell-cd16-positive" + } + ] + }, + { + "soulcap_abbreviation": "ILC1", + "soulcap_full_name": "Innate Lymphoid Cell 1", + "gap_type": "cl_axiom_gap", + "description": "No human-specific \"group 1 innate lymphoid cell\" CL term exists, unlike group 2 (CL:0001081) and group 3 (CL:0001078); confirmed by direct OLS4 search returning zero hits for the human-qualified query.", + "related_cl_ids": "CL:0001067", + "evidence": "reports/cl_term_issues.md#missing-human-specific-group-1-innate-lymphoid-cell-term", + "status": "filed_as_issue", + "repo_issue": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14", + "date_logged": "2026-07-23", + "association": "exact_abbreviation", + "subject_ids": [ + "SOULCAP:SC000008" + ], + "candidate_subject_ids": [ + "SOULCAP:SC000008" + ], + "evidence_links": [ + { + "label": "reports/cl_term_issues.md#missing-human-specific-group-1-innate-lymphoid-cell-term", + "href": "../../cl_term_issues.md#missing-human-specific-group-1-innate-lymphoid-cell-term" + }, + { + "label": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14", + "href": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14" + } + ] + }, + { + "soulcap_abbreviation": "Transitional", + "soulcap_full_name": "Transitional B cell", + "gap_type": "no_reasonable_cl_match", + "description": "SOULCAP row has all four marker columns (Required/Ideal exclusion, Required/Ideal phenotypic markers) completely empty in the master sheet — there is no marker definition to match against at all, so no CL candidate can be derived from markers. Distinct from the more specific \"T3\" (Transitional B cell 3) row, which does have marker data.", + "related_cl_ids": "(none)", + "evidence": "reports/candidate_cl_mappings_batch.tsv (note column); data/marker_combinations.csv", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "exact_abbreviation", + "subject_ids": [ + "SOULCAP:SC000027" + ], + "candidate_subject_ids": [ + "SOULCAP:SC000027" + ], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_batch.tsv", + "href": "../../candidate_cl_mappings_batch.tsv" + }, + { + "label": "data/marker_combinations.csv", + "href": "../../../data/marker_combinations.csv" + } + ] + }, + { + "soulcap_abbreviation": "CTNK", + "soulcap_full_name": "Cytotoxic Natural Killer Cell", + "gap_type": "sheet_data_issue", + "description": "Sheet's Full Name reads \"Cytotoxice Natural Killer Cell\" (typo, extra trailing \"e\"); this broke batch lexical search entirely for the row (zero OLS4 hits). Marker-based match was unaffected. Cannot be fixed in this repo — requires a correction in the Google Sheet master.", + "related_cl_ids": "CL:0000939", + "evidence": "reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-22", + "association": "exact_abbreviation", + "subject_ids": [ + "SOULCAP:SC000003" + ], + "candidate_subject_ids": [ + "SOULCAP:SC000003" + ], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells", + "href": "../../candidate_cl_mappings_narrative.md#dc-family--dendritic-cells" + } + ] + }, + { + "soulcap_abbreviation": "pDC", + "soulcap_full_name": "Peripheral Dendritic Cell (as written)", + "gap_type": "sheet_data_issue", + "description": "Sheet's Full Name reads \"Peripheral Dendritic Cell,\" but the row's markers (CD123hi, CD303+, low CD33) are the textbook definition of plasmacytoid dendritic cells — likely a wrong word, should probably read \"Plasmacytoid.\" This broke batch lexical search (returned an unrelated \"migratory dendritic cell\" hit). Cannot be fixed in this repo — requires a correction in the Google Sheet master.", + "related_cl_ids": "CL:0001058", + "evidence": "reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-22", + "association": "exact_abbreviation", + "subject_ids": [ + "SOULCAP:SC000014" + ], + "candidate_subject_ids": [ + "SOULCAP:SC000014" + ], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#dc-family--dendritic-cells", + "href": "../../candidate_cl_mappings_narrative.md#dc-family--dendritic-cells" + } + ] + }, + { + "soulcap_abbreviation": "Mono", + "soulcap_full_name": "Monocyte", + "gap_type": "cl_axiom_gap", + "description": "CL:0000576 (plain \"monocyte\") has zero marker axiom rows in cl_pro_relationships.tsv — same parent-class axiom-gap pattern as NK/ILC/cDC/B cell. Match is lexical-only (OAK-verified), not marker-confirmed.", + "related_cl_ids": "CL:0000576", + "evidence": "reports/candidate_cl_mappings_narrative.md#monocyte-family; reports/cl_pro_relationships.tsv", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "exact_abbreviation", + "subject_ids": [ + "SOULCAP:SC000017" + ], + "candidate_subject_ids": [ + "SOULCAP:SC000017" + ], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#monocyte-family", + "href": "../../candidate_cl_mappings_narrative.md#monocyte-family" + }, + { + "label": "reports/cl_pro_relationships.tsv", + "href": "../../cl_pro_relationships.tsv" + } + ] + }, + { + "soulcap_abbreviation": "CMo / NCMo / IntMo", + "soulcap_full_name": "Classical / Non-classical / Intermediate Monocyte", + "gap_type": "cl_axiom_gap", + "description": "CL:0000860/CL:0000875/CL:0002393 assert only CCR2 (CD192) and CX3CR1 status plus lineage negatives — none assert the CD14/CD16 axioms that actually define these three subsets per Ziegler-Heitbrock et al. 2010 (PMID:20628149). Already covered by repo issue #12 (filed upstream as CL#3665) — not a new gap, cited here for context on why these rows can only be matched lexically.", + "related_cl_ids": "CL:0000860; CL:0000875; CL:0002393", + "evidence": "reports/candidate_cl_mappings_narrative.md#monocyte-family; https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12", + "status": "filed_as_issue", + "repo_issue": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12", + "date_logged": "2026-07-24", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#monocyte-family", + "href": "../../candidate_cl_mappings_narrative.md#monocyte-family" + }, + { + "label": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12", + "href": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12" + }, + { + "label": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12", + "href": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12" + } + ] + }, + { + "soulcap_abbreviation": "Mono / CMo / NCMo / IntMo", + "soulcap_full_name": "Monocyte family", + "gap_type": "sheet_data_issue", + "description": "Required exclusion column reads \"CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)\" for all four rows — the second group is missing a \"]\" after CD123hi (likely should read \"([CD123hi]-|CD193-)\", matching the cDC/pDC pattern). Cannot be fixed in this repo — requires a correction in the Google Sheet master.", + "related_cl_ids": "(none)", + "evidence": "reports/candidate_cl_mappings_narrative.md#monocyte-family; data/marker_combinations.csv", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#monocyte-family", + "href": "../../candidate_cl_mappings_narrative.md#monocyte-family" + }, + { + "label": "data/marker_combinations.csv", + "href": "../../../data/marker_combinations.csv" + } + ] + }, + { + "soulcap_abbreviation": "B cell", + "soulcap_full_name": "B cell", + "gap_type": "cl_axiom_gap", + "description": "CL:0000236 (plain \"B cell\") has zero marker axiom rows in cl_pro_relationships.tsv — same parent-class axiom-gap pattern as NK/ILC/cDC/monocyte. Match is lexical-only (OAK-verified after OLS4 REST search returned zero hits for this exact query), not marker-confirmed.", + "related_cl_ids": "CL:0000236", + "evidence": "reports/candidate_cl_mappings_narrative.md#b-cell-parent; reports/cl_pro_relationships.tsv", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "exact_abbreviation", + "subject_ids": [ + "SOULCAP:SC000023" + ], + "candidate_subject_ids": [ + "SOULCAP:SC000023" + ], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#b-cell-parent", + "href": "../../candidate_cl_mappings_narrative.md#b-cell-parent" + }, + { + "label": "reports/cl_pro_relationships.tsv", + "href": "../../cl_pro_relationships.tsv" + } + ] + }, + { + "soulcap_abbreviation": "BDN1 / BDN2 / BDN3 / BDN4", + "soulcap_full_name": "Double Negative B cell 1-4", + "gap_type": "cl_axiom_gap", + "description": "SOULCAP defines four \"double negative\" B cell subsets (DN1-4, the atypical/age-associated B cell scheme from the autoimmunity/aging literature) via CD21/CD11c/CD185/IgE combinations. CL has only the general parent CL:0000981 \"double negative memory B cell\" with no DN1-4 subtyping; direct searches for \"DN1 B cell\" through \"DN4 B cell\" and \"atypical memory B cell\" returned zero CL hits. All four SOULCAP rows currently collapse to the same Broad match.", + "related_cl_ids": "CL:0000981", + "evidence": "reports/candidate_cl_mappings_narrative.md#b-cell-maturation-tree--transitional--mature--naive--double-negative", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#b-cell-maturation-tree--transitional--mature--naive--double-negative", + "href": "../../candidate_cl_mappings_narrative.md#b-cell-maturation-tree--transitional--mature--naive--double-negative" + } + ] + }, + { + "soulcap_abbreviation": "IgD only", + "soulcap_full_name": "IgD only Memory B cell", + "gap_type": "cl_axiom_gap", + "description": "SOULCAP distinguishes IgD+IgM- (\"IgD only\") from IgD+IgM+ (\"Unswitched\") memory B cells as two separate populations. No CL term exists for the IgD+IgM- subset — direct searches for \"IgD-positive memory B cell\" and \"IgD only memory B cell\" returned zero hits; the only IgD-related term found, CL:0001053 \"IgD-negative memory B cell,\" is the opposite polarity. Left unmapped rather than forced onto a wrong-polarity term.", + "related_cl_ids": "CL:0001053 (wrong polarity, not used)", + "evidence": "reports/candidate_cl_mappings_narrative.md#memory-b-cell-tree", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "exact_abbreviation", + "subject_ids": [ + "SOULCAP:SC000038" + ], + "candidate_subject_ids": [ + "SOULCAP:SC000038" + ], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#memory-b-cell-tree", + "href": "../../candidate_cl_mappings_narrative.md#memory-b-cell-tree" + } + ] + }, + { + "soulcap_abbreviation": "CD4+ T cell / CD8+ T cell / CD4+/CD8+ T cell / CD4-/CD8- T cell / CD4+/CD8+ TCRab T cell / CD4-/CD8- TCRab T cell / CD4+ TCRgd T cell / CD8+ TCRgd T cell / CD4+/CD8+ TCRgd", + "soulcap_full_name": "various", + "gap_type": "cl_axiom_gap", + "description": "CL organizes CD4/CD8 status primarily under the alpha-beta T cell lineage: no combined alpha-beta+gamma-delta CD4/CD8 terms exist, no clean double-positive alpha-beta term exists, and the only double-negative term found (CL:0002489) is a thymocyte-stage term (wrong tissue for a blood/PBMC panel). All 9 rows Broad-matched to the nearest alpha-beta or gamma-delta parent with this gap noted.", + "related_cl_ids": "CL:0000624; CL:0000625; CL:0000789; CL:0000084; CL:0000798", + "evidence": "reports/candidate_cl_mappings_narrative.md#combined-lineage-b-and-double-positivedouble-negative-gaps", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#combined-lineage-b-and-double-positivedouble-negative-gaps", + "href": "../../candidate_cl_mappings_narrative.md#combined-lineage-b-and-double-positivedouble-negative-gaps" + } + ] + }, + { + "soulcap_abbreviation": "CD56+ T cell family (13 rows)", + "soulcap_full_name": "various CD56+ T cell subsets", + "gap_type": "cl_axiom_gap", + "description": "SOULCAP crosses CD56 positivity with CD4/CD8/DP/DN status and TCRab/TCRgd lineage (13 variants); CL has only one term at this level (CL:4052055, pending rename to \"CD56-positive T cell, human\" per issue #13) with no further subdivision. All 13 rows Broad-match to CL:4052055.", + "related_cl_ids": "CL:4052055", + "evidence": "reports/candidate_cl_mappings_narrative.md#cd56-t-cell-family; https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#cd56-t-cell-family", + "href": "../../candidate_cl_mappings_narrative.md#cd56-t-cell-family" + }, + { + "label": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13", + "href": "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13" + } + ] + }, + { + "soulcap_abbreviation": "Tcm / Tem / Temra (general, no CD4/CD8 split) and all TCRgd-specific Tnaive/Tcm/Tem/Temra rows", + "soulcap_full_name": "various", + "gap_type": "cl_axiom_gap", + "description": "CL has no generic central/effector memory T cell term spanning both CD4 and CD8 (only CD4-specific and CD8-specific versions exist), and no gamma-delta-specific differentiation-state terms at all. ~13 rows Broad-matched to the nearest available parent (CL:0000084 T cell, or CL:0000798 gamma-delta T cell) with this gap noted.", + "related_cl_ids": "CL:0000084; CL:0000798", + "evidence": "reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree", + "href": "../../candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree" + } + ] + }, + { + "soulcap_abbreviation": "CD8+ Temra / CD8+ TCRab Temra", + "soulcap_full_name": "CD8+ CD45RA+ effector memory T cell", + "gap_type": "cl_axiom_gap", + "description": "CL:4030002 (effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated) appears to be CD4-specific only; no CD8+ counterpart with the same \"terminally differentiated\" qualifier was found — only the non-TEMRA-specific CL:0000913 (effector memory CD8-positive, alpha-beta T cell). Possible asymmetry in CL's own hierarchy; needs a second look before concluding it's a genuine omission rather than differently-named.", + "related_cl_ids": "CL:4030002; CL:0000913", + "evidence": "reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree", + "href": "../../candidate_cl_mappings_narrative.md#naive--central-memory--effector-memory--temra-tree" + } + ] + }, + { + "soulcap_abbreviation": "(26 rows, various abbreviations)", + "soulcap_full_name": "(no Full Name in sheet)", + "gap_type": "sheet_data_issue", + "description": "26 rows in the T cell branch have a completely empty Full Name field, so no name-based match can be attempted (Conv TCRab family, T helper, T cytotoxic, Tfh, CD4 PanT helper/Treg, ConT Treg-like/Tfh-like, Th1/2/9/17-like, Vg9/Vd1/Vd2/Vd3 subsets). Additionally, Th1-like/Th2-like/Th9-like/Th17-like each appear TWICE in the sheet: one copy (parented under \"CD4 ConT\") has iNKT-style TCRVa24-Ja18/CD1d-a-GalCer markers that look copy-pasted from an unrelated row; the other (no parent) has the correct Th-subset chemokine receptor panel (CD183/CD185/CD194/CD196). Likely a genuine sheet data bug, not two intentional variants. Cannot be fixed here — requires correction in the Google Sheet master.", + "related_cl_ids": "CL:0000912 (T helper, once named); CL:0000910 (T cytotoxic, once named)", + "evidence": "reports/candidate_cl_mappings_narrative.md#rows-with-no-full-name-in-the-sheet--not-mapped", + "status": "open", + "repo_issue": "(not yet filed)", + "date_logged": "2026-07-24", + "association": "family_or_unresolved", + "subject_ids": [], + "candidate_subject_ids": [], + "evidence_links": [ + { + "label": "reports/candidate_cl_mappings_narrative.md#rows-with-no-full-name-in-the-sheet--not-mapped", + "href": "../../candidate_cl_mappings_narrative.md#rows-with-no-full-name-in-the-sheet--not-mapped" + } + ] + } + ], + "findings": [ + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000017", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000018", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000019", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000020", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000059", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000074", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000075", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000076", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000077", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000078", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000079", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000107", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000109", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000110", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000111", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000112", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000113", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000114", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000123", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000124", + "message": "2 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000125", + "message": "1 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000126", + "message": "2 marker cell(s) cannot be scored." + }, + { + "severity": "error", + "code": "invalid_profile", + "subject": "SOULCAP:SC000127", + "message": "2 marker cell(s) cannot be scored." + }, + { + "severity": "warning", + "code": "uncertain_proposal", + "subject": "SOULCAP:SC000006", + "message": "Proposal for CL:0001074 is explicitly uncertain." + }, + { + "severity": "warning", + "code": "uncertain_proposal", + "subject": "SOULCAP:SC000064", + "message": "Proposal for CL:0000789 is explicitly uncertain." + }, + { + "severity": "warning", + "code": "uncertain_proposal", + "subject": "SOULCAP:SC000065", + "message": "Proposal for CL:0000084 is explicitly uncertain." + }, + { + "severity": "warning", + "code": "uncertain_proposal", + "subject": "SOULCAP:SC000068", + "message": "Proposal for CL:0000789 is explicitly uncertain." + }, + { + "severity": "warning", + "code": "uncertain_proposal", + "subject": "SOULCAP:SC000069", + "message": "Proposal for CL:0000789 is explicitly uncertain." + }, + { + "severity": "warning", + "code": "uncertain_proposal", + "subject": "SOULCAP:SC000070", + "message": "Proposal for CL:0000798 is explicitly uncertain." + }, + { + "severity": "warning", + "code": "uncertain_proposal", + "subject": "SOULCAP:SC000071", + "message": "Proposal for CL:0000798 is explicitly uncertain." + }, + { + "severity": "warning", + "code": "uncertain_proposal", + "subject": "SOULCAP:SC000072", + "message": "Proposal for CL:0000798 is explicitly uncertain." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000001", + "message": "CL:0000623: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000002", + "message": "CL:0000938: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000003", + "message": "CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000004", + "message": "CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000005", + "message": "CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000006", + "message": "CL:0001074: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000007", + "message": "CL:0001065: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000008", + "message": "CL:0001067: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000009", + "message": "CL:0001081: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000010", + "message": "CL:0001078: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000011", + "message": "CL:0000990: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000012", + "message": "CL:0002394: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000013", + "message": "CL:0002399: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000014", + "message": "CL:0001058: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000015", + "message": "CL:0000043: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000016", + "message": "CL:0000043: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000017", + "message": "CL:0000576: structured fields empty: literature_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000018", + "message": "CL:0000860: structured fields empty: literature_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000019", + "message": "CL:0000875: structured fields empty: literature_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000020", + "message": "CL:0002393: structured fields empty: literature_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000021", + "message": "CL:0000775: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000022", + "message": "CL:0000771: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000023", + "message": "CL:0000236: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000024", + "message": "CL:0000946: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000025", + "message": "CL:0000980: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000026", + "message": "CL:0000786: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000028", + "message": "CL:0000818: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000029", + "message": "CL:0000785: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000030", + "message": "CL:0000960: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000031", + "message": "CL:0000788: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000032", + "message": "CL:0000981: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000033", + "message": "CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000034", + "message": "CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000035", + "message": "CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000036", + "message": "CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000037", + "message": "CL:0000787: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000039", + "message": "CL:0000970: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000040", + "message": "CL:0000971: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000041", + "message": "CL:0000972: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000042", + "message": "CL:0000973: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000043", + "message": "CL:0000979: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000044", + "message": "CL:0000948: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000045", + "message": "CL:0000084: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000046", + "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000047", + "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000048", + "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000049", + "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000050", + "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000051", + "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000052", + "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000053", + "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000054", + "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence." + }, + { + "severity": "info", + "code": "evidence_not_recorded", + "subject": "SOULCAP:SC000055", + "message": "CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. 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no other eosinophil-specific CD191 evidence found via targeted EuropePMC search.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000771", + "cl_label": "eosinophil", + "pr_id": "PR:000001255", + "pr_label": "C-C chemokine receptor type 3", + "cd_synonym": "CD193 (exact)", + "species_support": "human", + "evidence_source": "europepmc_search", + "citation": "(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow", + "quote": "candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5Rα), HLA-DR, using 10 parameter flow cytometry", + "source_ref": "https://europepmc.org/article/MED/38666394", + "evidence_links": [ + { + "label": "https://europepmc.org/article/MED/38666394", + "href": "https://europepmc.org/article/MED/38666394" + } + ] + }, + { + "cl_id": "CL:0000771", + "cl_label": "eosinophil", + "pr_id": "PR:000001307", + "pr_label": "CD44 molecule", + "cd_synonym": "CD44 (label); CDw44 (exact)", + "species_support": "human", + "evidence_source": "europepmc_search", + "citation": "(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow", + "quote": "candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5Rα), HLA-DR, using 10 parameter flow cytometry", + "source_ref": "https://europepmc.org/article/MED/38666394", + "evidence_links": [ + { + "label": "https://europepmc.org/article/MED/38666394", + "href": "https://europepmc.org/article/MED/38666394" + } + ] + }, + { + "cl_id": "CL:0000771", + "cl_label": "eosinophil", + "pr_id": "PR:000001343", + "pr_label": "CD69 molecule", + "cd_synonym": "CD69 (label)", + "species_support": "human", + "evidence_source": "europepmc_search", + "citation": "(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow", + "quote": "candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5Rα), HLA-DR, using 10 parameter flow cytometry", + "source_ref": "https://europepmc.org/article/MED/38666394", + "evidence_links": [ + { + "label": "https://europepmc.org/article/MED/38666394", + "href": "https://europepmc.org/article/MED/38666394" + } + ] + }, + { + "cl_id": "CL:0000771", + "cl_label": "eosinophil", + "pr_id": "PR:000005178", + "pr_label": "CD9 molecule", + "cd_synonym": "CD9 (label)", + "species_support": "human", + "evidence_source": "europepmc_search", + "citation": "(Cytometry B) 2024 (PMID:38666394; DOI:10.1002/cyto.b.22174) -- flow cytometric immunophenotyping of eosinophilopoiesis in normal human bone marrow", + "quote": "candidate markers that included EMR-1, Siglec-8, CCR3, CD9, CD11a, CD11b, CD11c, CD13, CD16, CD29, CD34, CD38, CD45, CD44, CD49d, CD49f, CD54, CD62L, CD69, CD117, CD125 (IL-5Rα), HLA-DR, using 10 parameter flow cytometry", + "source_ref": "https://europepmc.org/article/MED/38666394", + "evidence_links": [ + { + "label": "https://europepmc.org/article/MED/38666394", + "href": "https://europepmc.org/article/MED/38666394" + } + ] + }, + { + "cl_id": "CL:0000775", + "cl_label": "neutrophil", + "pr_id": "PR:000001479", + "pr_label": "low affinity immunoglobulin gamma Fc region receptor II", + "cd_synonym": "CD32 (broad)", + "species_support": "human", + "evidence_source": "europepmc_search", + "citation": "Su K et al. 2007 (PMID:17312177; DOI:10.4049/jimmunol.178.5.3272) -- FcγRIIb (CD32B) expression profiling in human circulating leukocytes", + "quote": "we found that FcgammaRIIb is expressed on the cell surface of circulating B lymphocytes, monocytes, neutrophils, myeloid dendritic cells (DCs), and at very low levels on plasmacytoid DCs from some donors", + "source_ref": "https://europepmc.org/article/MED/17312177", + "evidence_links": [ + { + "label": "https://europepmc.org/article/MED/17312177", + "href": "https://europepmc.org/article/MED/17312177" + } + ] + }, + { + "cl_id": "CL:0000775", + "cl_label": "neutrophil", + "pr_id": "PR:000001879", + "pr_label": "leukosialin", + "cd_synonym": "CD43 (related)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "CD43 not found in any targeted EuropePMC search in a human-neutrophil-specific context ('CD43 leukosialin human neutrophil' returned unrelated papers).", + "evidence_links": [] + }, + { + "cl_id": "CL:0000786", + "cl_label": "plasma cell", + "pr_id": "PR:000001289", + "pr_label": "membrane-spanning 4-domains subfamily A member 1", + "cd_synonym": "CD20 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)", + "quote": "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000786", + "cl_label": "plasma cell", + "pr_id": "PR:000001935", + "pr_label": "syndecan-1", + "cd_synonym": "CD138 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)", + "quote": "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000787", + "cl_label": "memory B cell", + "pr_id": "PR:000001935", + "pr_label": "syndecan-1", + "cd_synonym": "CD138 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122) -- describes the plasmablast/plasma-cell transition boundary, not memory B cells directly, but confirms CD138 as a human B-lineage differentiation marker", + "quote": "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000787", + "cl_label": "memory B cell", + "pr_id": "PR:000001289", + "pr_label": "membrane-spanning 4-domains subfamily A member 1", + "cd_synonym": "CD20 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)", + "quote": "Mature B cells typically express both CD19 and CD20.", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000788", + "cl_label": "naive B cell", + "pr_id": "PR:000001963", + "pr_label": "CD27 molecule", + "cd_synonym": "CD27 (label); CD27L (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)", + "quote": "\"**N**: CD19+ CD27− CD38− CD24− IgD+\" [naive B cell gating entry, Table 1]", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000788", + "cl_label": "naive B cell", + "pr_id": "PR:000001289", + "pr_label": "membrane-spanning 4-domains subfamily A member 1", + "cd_synonym": "CD20 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)", + "quote": "Mature B cells typically express both CD19 and CD20.", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000803", + "cl_label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell", + "pr_id": "PR:000001004", + "pr_label": "CD4 molecule", + "cd_synonym": "CD4 (label)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Kelm M et al. 2026 (PMID: 41727470; DOI: 10.3389/fimmu.2026.1739493; PMC: PMC12920462)", + "quote": "Purity of PHA- and Zole- expanded αβ and γδ T-cell cultures and MACS-isolated T-cell populations were assessed by flow cytometry using anti-CD3, CD4, CD8, γδ TCR, and αβ TCR monoclonal antibodies.", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "../../literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000803", + "cl_label": "CD4-negative CD8-negative gamma-delta intraepithelial T cell", + "pr_id": "PR:000001084", + "pr_label": "T-cell surface glycoprotein CD8 alpha chain", + "cd_synonym": "CD8 (label); CD8A (exact); CD8a (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Kelm M et al. 2026 (PMID: 41727470; DOI: 10.3389/fimmu.2026.1739493; PMC: PMC12920462)", + "quote": "Purity of PHA- and Zole- expanded αβ and γδ T-cell cultures and MACS-isolated T-cell populations were assessed by flow cytometry using anti-CD3, CD4, CD8, γδ TCR, and αβ TCR monoclonal antibodies.", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "../../literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000814", + "cl_label": "mature NK T cell", + "pr_id": "PR:000001874", + "pr_label": "KLRB1-like protein", + "cd_synonym": "", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Lal KG et al. 2018 (PMID:29533501; DOI:10.1002/cyto.a.23357)", + "quote": "we defined iNKT cell subsets by the co-expression of TCR Vα24 and Vβ11 among CD3+ cells, and further through their expression of CD4 and CD161", + "source_ref": "reports/literature/inkt_markers.md", + "evidence_links": [ + { + "label": "reports/literature/inkt_markers.md", + "href": "../../literature/inkt_markers.md" + } + ] + }, + { + "cl_id": "CL:0000818", + "cl_label": "transitional stage B cell", + "pr_id": "PR:000001408", + "pr_label": "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1", + "cd_synonym": "CD38 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)", + "quote": "T1 (CD38+++CD24hiCD10++IgDlo/−), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000818", + "cl_label": "transitional stage B cell", + "pr_id": "PR:000001932", + "pr_label": "signal transducer CD24", + "cd_synonym": "CD24 (label); CD24A (related)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)", + "quote": "T1 (CD38+++CD24hiCD10++IgDlo/−), T2 (CD38++CD24hiCD10+IgD+), and T3 (CD38+CD24+IgD+ABCB1−)", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000818", + "cl_label": "transitional stage B cell", + "pr_id": "PR:000001289", + "pr_label": "membrane-spanning 4-domains subfamily A member 1", + "cd_synonym": "CD20 (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "CD20 positivity on transitional B cells is not stated verbatim in reports/literature/b_cell_markers.md -- the report only confirms CD20 on 'mature B cells' generally (Griffin & Rothstein 2012), not the transitional stage specifically.", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000860", + "cl_label": "classical monocyte", + "pr_id": "PR:000001199", + "pr_label": "C-C chemokine receptor type 2", + "cd_synonym": "CD192 (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000860", + "cl_label": "classical monocyte", + "pr_id": "PR:000001002", + "pr_label": "CD19 molecule", + "cd_synonym": "CD19 (label)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000860", + "cl_label": "classical monocyte", + "pr_id": "PR:000001020", + "pr_label": "CD3 epsilon", + "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000860", + "cl_label": "classical monocyte", + "pr_id": "PR:000001289", + "pr_label": "membrane-spanning 4-domains subfamily A member 1", + "cd_synonym": "CD20 (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000875", + "cl_label": "non-classical monocyte", + "pr_id": "PR:000001206", + "pr_label": "CX3C chemokine receptor 1", + "cd_synonym": "", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000875", + "cl_label": "non-classical monocyte", + "pr_id": "PR:000001002", + "pr_label": "CD19 molecule", + "cd_synonym": "CD19 (label)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000875", + "cl_label": "non-classical monocyte", + "pr_id": "PR:000001020", + "pr_label": "CD3 epsilon", + "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000875", + "cl_label": "non-classical monocyte", + "pr_id": "PR:000001289", + "pr_label": "membrane-spanning 4-domains subfamily A member 1", + "cd_synonym": "CD20 (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0000895", + "cl_label": "naive thymus-derived CD4-positive, alpha-beta T cell", + "pr_id": "PR:000001380", + "pr_label": "interleukin-2 receptor subunit alpha", + "cd_synonym": "CD25 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg", + "quote": "In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "../../literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000898", + "cl_label": "naive T cell", + "pr_id": "PR:000001318", + "pr_label": "L-selectin", + "cd_synonym": "CD62 (exact); CD62L (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Kamigaichi A et al. 2026 (PMID: 42047825; DOI: 10.1007/s00262-026-04357-4; PMC: PMC13125411) -- confirms CD62L used on human CD4+ T cells, though in a Th1 (not naive-T) context", + "quote": "Th1 (CXCR3+CCR4−CCR6− CD62LlowCD4+ T cells)", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "../../literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000898", + "cl_label": "naive T cell", + "pr_id": "PR:000001307", + "pr_label": "CD44 molecule", + "cd_synonym": "CD44 (label); CDw44 (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "CD44 not mentioned anywhere in reports/literature/t_cell_markers.md; not found via a targeted EuropePMC search either ('CD44 human naive T cell surface marker' returned unrelated tissue-resident-memory/B-cell papers).", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "../../literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000898", + "cl_label": "naive T cell", + "pr_id": "PR:000001015", + "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA", + "cd_synonym": "CD45RA (label)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", + "quote": "CD3+/CD8−/CD4+/CCR7+/CD45RA+", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "../../literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000898", + "cl_label": "naive T cell", + "pr_id": "PR:000001203", + "pr_label": "C-C chemokine receptor type 7", + "cd_synonym": "CD197 (exact); CDw197 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", + "quote": "CD3+/CD8−/CD4+/CCR7+/CD45RA+", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "../../literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000898", + "cl_label": "naive T cell", + "pr_id": "PR:000001869", + "pr_label": "interleukin-7 receptor subunit alpha", + "cd_synonym": "CD127 (exact); CDw127 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg", + "quote": "In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "../../literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000900", + "cl_label": "naive thymus-derived CD8-positive, alpha-beta T cell", + "pr_id": "PR:000001380", + "pr_label": "interleukin-2 receptor subunit alpha", + "cd_synonym": "CD25 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Kamran M et al. 2025 (PMID: 41394832; DOI: 10.3389/fimmu.2025.1676937; PMC: PMC12695756) -- confirms CD25/CD127 as human T cell markers, though in a Treg (not naive-T) context; naive T cells are CD25-low/CD127-high, the inverse pattern from Treg", + "quote": "In humans, a combination of high CD25 and low or absent CD127 expression helps differentiate Tregs from effector T cells, which usually express high levels of CD127", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "../../literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000904", + "cl_label": "central memory CD4-positive, alpha-beta T cell", + "pr_id": "PR:000001015", + "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA", + "cd_synonym": "CD45RA (label)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", + "quote": "CD3+/CD8−/CD4+/CCR7+/CD45RA−", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "../../literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000904", + "cl_label": "central memory CD4-positive, alpha-beta T cell", + "pr_id": "PR:000001203", + "pr_label": "C-C chemokine receptor type 7", + "cd_synonym": "CD197 (exact); CDw197 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", + "quote": "CD3+/CD8−/CD4+/CCR7+/CD45RA−", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "../../literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000905", + "cl_label": "effector memory CD4-positive, alpha-beta T cell", + "pr_id": "PR:000001015", + "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA", + "cd_synonym": "CD45RA (label)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", + "quote": "CD3+/CD8−/CD4+/CCR7−/CD45RA+", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "../../literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000905", + "cl_label": "effector memory CD4-positive, alpha-beta T cell", + "pr_id": "PR:000001203", + "pr_label": "C-C chemokine receptor type 7", + "cd_synonym": "CD197 (exact); CDw197 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244)", + "quote": "CD3+/CD8−/CD4+/CCR7−/CD45RA+", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "../../literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000907", + "cl_label": "central memory CD8-positive, alpha-beta T cell", + "pr_id": "PR:000001015", + "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA", + "cd_synonym": "CD45RA (label)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Central Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design", + "quote": "CD3+/CD8+/CD4−/CCR7+/CD45RA+", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "../../literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000907", + "cl_label": "central memory CD8-positive, alpha-beta T cell", + "pr_id": "PR:000001203", + "pr_label": "C-C chemokine receptor type 7", + "cd_synonym": "CD197 (exact); CDw197 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Central Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design", + "quote": "CD3+/CD8+/CD4−/CCR7+/CD45RA+", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "../../literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000913", + "cl_label": "effector memory CD8-positive, alpha-beta T cell", + "pr_id": "PR:000001015", + "pr_label": "receptor-type tyrosine-protein phosphatase C isoform CD45RA", + "cd_synonym": "CD45RA (label)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Effector Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design", + "quote": "CD3+/CD8+/CD4−/CCR7+/CD45RA+", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "../../literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000913", + "cl_label": "effector memory CD8-positive, alpha-beta T cell", + "pr_id": "PR:000001203", + "pr_label": "C-C chemokine receptor type 7", + "cd_synonym": "CD197 (exact); CDw197 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Finak G et al. 2016 (PMID: 26861911; DOI: 10.1038/srep20686; PMC: PMC4748244) -- CD8 Naive gating string quoted verbatim; the CD8 Effector Memory string was not separately captured in this M2 report, but the same CD45RA/CCR7 panel is applied orthogonally to CD4 and CD8 per the paper's design", + "quote": "CD3+/CD8+/CD4−/CCR7+/CD45RA+", + "source_ref": "reports/literature/t_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/t_cell_markers.md", + "href": "../../literature/t_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000938", + "cl_label": "CD16-negative, CD56-bright natural killer cell, human", + "pr_id": "PR:000001024", + "pr_label": "neural cell adhesion molecule 1", + "cd_synonym": "CD56 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0)", + "quote": "human NK cells are typically divided into two main categories on the basis of the density of CD56, the 140-kDa isoform of the neural cell adhesion molecule (NCAM)2, on the cell surface: CD56bright and CD56dim NK cells.", + "source_ref": "reports/literature/nk_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/nk_cell_markers.md", + "href": "../../literature/nk_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000938", + "cl_label": "CD16-negative, CD56-bright natural killer cell, human", + "pr_id": "PR:000001483", + "pr_label": "low affinity immunoglobulin gamma Fc region receptor III", + "cd_synonym": "CD16 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360)", + "quote": "CD56bright human NK cells express high levels of CD62L (l-selectin) and CD94 but absent or low levels of CD16 and KIRs", + "source_ref": "reports/literature/nk_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/nk_cell_markers.md", + "href": "../../literature/nk_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000938", + "cl_label": "CD16-negative, CD56-bright natural killer cell, human", + "pr_id": "PR:000002015", + "pr_label": "MHC class II histocompatibility antigen alpha chain DRA", + "cd_synonym": "", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0) -- indirect: HLA-D family expression shown on an adaptive NK subset (NK3B), not stated specifically for CD56bright/CD56dim", + "quote": "Notably, NK3B (cluster 1) was distinguished by expression of members of the HLA-D gene family, CD74, CCL5, CD7 and KLRC1, and NK3A exhibited enhanced cytotoxic capabilities (through expression of GZMA, GZMB and PRF1)", + "source_ref": "reports/literature/nk_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/nk_cell_markers.md", + "href": "../../literature/nk_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000938", + "cl_label": "CD16-negative, CD56-bright natural killer cell, human", + "pr_id": "PR:000001319", + "pr_label": "SLAM family member 5", + "cd_synonym": "CD84 (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No CD84-on-NK-cell evidence found in reports/literature/nk_cell_markers.md or a targeted EuropePMC search ('CD84 human natural killer cell surface marker' -- top hits were CD84 in MDSCs/breast cancer/CLL, none NK-specific).", + "evidence_links": [ + { + "label": "reports/literature/nk_cell_markers.md", + "href": "../../literature/nk_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000939", + "cl_label": "CD16-positive, CD56-dim natural killer cell, human", + "pr_id": "PR:000001024", + "pr_label": "neural cell adhesion molecule 1", + "cd_synonym": "CD56 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0)", + "quote": "human NK cells are typically divided into two main categories on the basis of the density of CD56, the 140-kDa isoform of the neural cell adhesion molecule (NCAM)2, on the cell surface: CD56bright and CD56dim NK cells.", + "source_ref": "reports/literature/nk_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/nk_cell_markers.md", + "href": "../../literature/nk_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000939", + "cl_label": "CD16-positive, CD56-dim natural killer cell, human", + "pr_id": "PR:000002015", + "pr_label": "MHC class II histocompatibility antigen alpha chain DRA", + "cd_synonym": "", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Rebuffet L et al. 2024 (PMID:38956378; DOI:10.1038/s41590-024-01883-0) -- indirect: HLA-D family expression shown on an adaptive NK subset (NK3B), not stated specifically for CD56bright/CD56dim", + "quote": "Notably, NK3B (cluster 1) was distinguished by expression of members of the HLA-D gene family, CD74, CCL5, CD7 and KLRC1, and NK3A exhibited enhanced cytotoxic capabilities (through expression of GZMA, GZMB and PRF1)", + "source_ref": "reports/literature/nk_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/nk_cell_markers.md", + "href": "../../literature/nk_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000939", + "cl_label": "CD16-positive, CD56-dim natural killer cell, human", + "pr_id": "PR:000001483", + "pr_label": "low affinity immunoglobulin gamma Fc region receptor III", + "cd_synonym": "CD16 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Scoville SD et al. 2017 (PMID:28396671; DOI:10.3389/fimmu.2017.00360)", + "quote": "In contrast, CD56dim NK cells are CD16hi and express more KIRs but less CD94 and CD62L; they predominate in PB", + "source_ref": "reports/literature/nk_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/nk_cell_markers.md", + "href": "../../literature/nk_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000960", + "cl_label": "T3 B cell", + "pr_id": "PR:000001318", + "pr_label": "L-selectin", + "cd_synonym": "CD62 (exact); CD62L (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "CD62L not mentioned in the T3-transitional context in reports/literature/b_cell_markers.md (only mentioned for DN2 B cells: 'lack of CXCR5 and CD62L expression', Sachinidis 2021, a different B cell subset).", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000960", + "cl_label": "T3 B cell", + "pr_id": "PR:000001338", + "pr_label": "complement receptor type 2", + "cd_synonym": "CD21 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)", + "quote": "The gradual loss of CD10, CD5, and IgM and the upregulation of CD22, CD44, CD21, and CD23 as cells progress from immature to transitional (TI to T2 to T3) to mature naïve cells", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000960", + "cl_label": "T3 B cell", + "pr_id": "PR:000001880", + "pr_label": "low affinity immunoglobulin epsilon Fc receptor", + "cd_synonym": "CD23 (exact); CD23A (related)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Martin VG et al. 2016 (PMID: 27994589; DOI: 10.3389/fimmu.2016.00546)", + "quote": "The gradual loss of CD10, CD5, and IgM and the upregulation of CD22, CD44, CD21, and CD23 as cells progress from immature to transitional (TI to T2 to T3) to mature naïve cells", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000970", + "cl_label": "unswitched memory B cell", + "pr_id": "PR:000001963", + "pr_label": "CD27 molecule", + "cd_synonym": "CD27 (label); CD27L (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)", + "quote": "\"**M**: CD19+ CD27+ CD38−/lo\" [memory B cell gating entry]", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000972", + "cl_label": "class switched memory B cell", + "pr_id": "PR:000001963", + "pr_label": "CD27 molecule", + "cd_synonym": "CD27 (label); CD27L (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)", + "quote": "\"**M**: CD19+ CD27+ CD38−/lo\" [memory B cell gating entry]", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000980", + "cl_label": "plasmablast", + "pr_id": "PR:000001408", + "pr_label": "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1", + "cd_synonym": "CD38 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)", + "quote": "\"**ASC**: CD19+ CD27+ CD38hi\" and \"**M**: CD19+ CD27+ CD38−/lo\" and", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000980", + "cl_label": "plasmablast", + "pr_id": "PR:000001963", + "pr_label": "CD27 molecule", + "cd_synonym": "CD27 (label); CD27L (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)", + "quote": "\"**ASC**: CD19+ CD27+ CD38hi\" and \"**M**: CD19+ CD27+ CD38−/lo\" and", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000980", + "cl_label": "plasmablast", + "pr_id": "PR:000001289", + "pr_label": "membrane-spanning 4-domains subfamily A member 1", + "cd_synonym": "CD20 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Griffin DO & Rothstein TL 2012 (PMID: 22654880; DOI: 10.3389/fimmu.2012.00122)", + "quote": "as B cells differentiate to become plasmablasts and plasma cells, CD20 is lost but CD19 remains, as CD38/CD138 is acquired", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000980", + "cl_label": "plasmablast", + "pr_id": "PR:000001935", + "pr_label": "syndecan-1", + "cd_synonym": "CD138 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Woodruff MC et al. 2020 (PMID: 33028979; DOI: 10.1038/s41590-020-00814-z)", + "quote": "\"**CD138neg ASC**: CD138−\" and \"**CD138pos ASC**: CD138+\" [gating labels distinguishing", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000981", + "cl_label": "double negative memory B cell", + "pr_id": "PR:000001963", + "pr_label": "CD27 molecule", + "cd_synonym": "CD27 (label); CD27L (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Sachinidis A & Garyfallos A 2021 (PMID: 34964023; DOI: 10.31138/mjr.32.3.192)", + "quote": "Double negative (DN) B cells, also known as atypical memory B cells, constitute a B cell population that lacks expression of immunoglobulin D and CD27 memory marker.", + "source_ref": "reports/literature/b_cell_markers.md", + "evidence_links": [ + { + "label": "reports/literature/b_cell_markers.md", + "href": "../../literature/b_cell_markers.md" + } + ] + }, + { + "cl_id": "CL:0000990", + "cl_label": "conventional dendritic cell", + "pr_id": "PR:000001013", + "pr_label": "integrin alpha-X", + "cd_synonym": "CD11 (exact); CD11C (related); CD11c (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)", + "quote": "Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123−", + "source_ref": "reports/literature/dc_markers.md", + "evidence_links": [ + { + "label": "reports/literature/dc_markers.md", + "href": "../../literature/dc_markers.md" + } + ] + }, + { + "cl_id": "CL:0001058", + "cl_label": "plasmacytoid dendritic cell, human", + "pr_id": "PR:000001013", + "pr_label": "integrin alpha-X", + "cd_synonym": "CD11 (exact); CD11C (related); CD11c (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)", + "quote": "Conventional DCs (cDCs), also known as myeloid DCs, can be defined as CD11c+ CD123−", + "source_ref": "reports/literature/dc_markers.md", + "evidence_links": [ + { + "label": "reports/literature/dc_markers.md", + "href": "../../literature/dc_markers.md" + } + ] + }, + { + "cl_id": "CL:0001058", + "cl_label": "plasmacytoid dendritic cell, human", + "pr_id": "PR:000001889", + "pr_label": "CD14 molecule", + "cd_synonym": "CD14 (label)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)", + "quote": "DCs were defined as live, LIN(CD3, CD19, CD56)−CD14−HLA-DR+ cells.", + "source_ref": "reports/literature/dc_markers.md", + "evidence_links": [ + { + "label": "reports/literature/dc_markers.md", + "href": "../../literature/dc_markers.md" + } + ] + }, + { + "cl_id": "CL:0001058", + "cl_label": "plasmacytoid dendritic cell, human", + "pr_id": "PR:000001865", + "pr_label": "interleukin-3 receptor class 2 alpha chain", + "cd_synonym": "CD123 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Rhodes JW et al. 2019 (DOI:10.3389/fimmu.2019.01088)", + "quote": "pDCs are CD11c− CD123+ cells best characterized for their type I interferon", + "source_ref": "reports/literature/dc_markers.md", + "evidence_links": [ + { + "label": "reports/literature/dc_markers.md", + "href": "../../literature/dc_markers.md" + } + ] + }, + { + "cl_id": "CL:0001065", + "cl_label": "innate lymphoid cell", + "pr_id": "PR:000001002", + "pr_label": "CD19 molecule", + "cd_synonym": "CD19 (label)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Krabbendam L et al. 2021 (PMID:33300130; DOI:10.1002/eji.202048696)", + "quote": "Subsequently we gated out non‐relevant lineages using antibodies against CD3, CD4, TCRαβ, and TCRγδ (T cells), CD19 (B cells) CD14 (monocytes) FcRεR1a (mast cells), BDCA2 (pDCs), CD123 (pDCs, basophils), and CD34 (hematopoietic progenitors).", + "source_ref": "reports/literature/ilc_markers.md", + "evidence_links": [ + { + "label": "reports/literature/ilc_markers.md", + "href": "../../literature/ilc_markers.md" + } + ] + }, + { + "cl_id": "CL:0001065", + "cl_label": "innate lymphoid cell", + "pr_id": "PR:000001020", + "pr_label": "CD3 epsilon", + "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Krabbendam L et al. 2021 (PMID:33300130; DOI:10.1002/eji.202048696)", + "quote": "We gated for lymphocytes, excluded doublets and dead cells and selected CD45+CD3− cells", + "source_ref": "reports/literature/ilc_markers.md", + "evidence_links": [ + { + "label": "reports/literature/ilc_markers.md", + "href": "../../literature/ilc_markers.md" + } + ] + }, + { + "cl_id": "CL:0002393", + "cl_label": "intermediate monocyte", + "pr_id": "PR:000001002", + "pr_label": "CD19 molecule", + "cd_synonym": "CD19 (label)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0002393", + "cl_label": "intermediate monocyte", + "pr_id": "PR:000001020", + "pr_label": "CD3 epsilon", + "cd_synonym": "CD3 (label); CD3E (exact); CD3e (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0002393", + "cl_label": "intermediate monocyte", + "pr_id": "PR:000001199", + "pr_label": "C-C chemokine receptor type 2", + "cd_synonym": "CD192 (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0002393", + "cl_label": "intermediate monocyte", + "pr_id": "PR:000001289", + "pr_label": "membrane-spanning 4-domains subfamily A member 1", + "cd_synonym": "CD20 (exact)", + "species_support": "insufficient_evidence", + "evidence_source": "none", + "citation": "", + "quote": "", + "source_ref": "No verbatim sentence naming this marker on monocytes was found. The canonical human/mouse monocyte nomenclature paper this repo already cites for issue #12 (Ziegler-Heitbrock L et al. 2010, PMID:20628149, DOI:10.1182/blood-2010-02-258558) explicitly covers both species at the classification-scheme level ('defines 3 types of monocytes ... in human and in mouse blood') but its abstract does not name this marker specifically; full text would be needed to confirm. Targeted EuropePMC searches for this marker in a monocyte context returned only tangential recent disease-cohort papers, not clean definitional statements.", + "evidence_links": [] + }, + { + "cl_id": "CL:0002394", + "cl_label": "CD141-positive myeloid dendritic cell", + "pr_id": "PR:000002105", + "pr_label": "thrombomodulin", + "cd_synonym": "CD141 (exact)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)", + "quote": "DC1 corresponds to the cross-presenting CD141/BDCA-3+ cDC1, which is best marked by CLEC9A", + "source_ref": "reports/literature/dc_markers.md", + "evidence_links": [ + { + "label": "reports/literature/dc_markers.md", + "href": "../../literature/dc_markers.md" + } + ] + }, + { + "cl_id": "CL:0002399", + "cl_label": "CD1c-positive myeloid dendritic cell", + "pr_id": "PR:000002027", + "pr_label": "T-cell surface glycoprotein CD1c", + "cd_synonym": "CD1C (exact); CD1c (label)", + "species_support": "human", + "evidence_source": "m2_literature_report", + "citation": "Villani AC et al. 2017 (PMID:28428369; DOI:10.1126/science.aah4573)", + "quote": "DC2 and DC3 correspond to new subdivisions of the CD1C/BDCA-1+ cDC2", + "source_ref": "reports/literature/dc_markers.md", + "evidence_links": [ + { + "label": "reports/literature/dc_markers.md", + "href": "../../literature/dc_markers.md" + } + ] + } + ], + "limitations": [ + "All mappings remain proposals; marker compatibility does not establish equivalence.", + "Marker usage is extracted only from valid cells. Invalid cells can hide additional marker usage.", + "Empty structured evidence fields do not mean that literature does not exist; consult the narrative.", + "CL reverse view covers proposed targets, not the entire Cell Ontology.", + "No upstream services were queried. Snapshot age is not proof that an ontology is outdated." + ], + "evaluation": { + "schema_version": 1, + "generated_utc": "2026-09-11T04:13:49.655515+00:00", + "inputs": { + "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44", + "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8", + "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e", + "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c", + "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706", + "marker_policy": "317578b4b7fb1a9837b9a61fa85c2dc1ea6469eab4404b0435476ba4a12a1f84", + "marker_map": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7" + }, + "benchmark_path": "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\matcher_benchmark.tsv", + "matcher": { + "version": "0.1.0", + "source_hashes": { + "cl_match.py": "4d447e860e8c500196b2859549b91dac9549afeaee236eedd5d63049ca7f7cec", + "phenotype.py": "6d3e7e59b884365fa48596fe1365b8630053b70a6259bb0e8f42413a55a9514a", + "marker_syntax.py": "e40620b1d804eec3c1f05251716092abd7f5a273e11ba91ce61a3345b1872ade", + "registry.py": "a225ca650e0278378566bf7134b3d8daa33dabee0c61c3d479d8affddf7a25fd", + "evaluation.py": "69dd3abd6c1bbf5a5ae453428269179a5cca8b991c1338bb51097dadf06555c5", + "audit.py": "4d2bfeff9583efd80c37d8fef51e06abb887410f4b9d88ce9b68bceace8bc9bb", + "candidate_index.py": "d4c58041cb4c4a4033d1457ae9f04d2e4d814a2d80469dd7aced2e696539e9a6", + "marker_resolution.py": "17feb8779da5a3d429c9d8326d26195cb66bb25cebf9cd005c79410d99efe050" + } + }, + "config": { + "ks": [ + 1, + 3, + 5 + ], + "ranking": "production order, including disqualified candidates", + "ties": "primary metrics use production order; bounds report tie sensitivity", + "denominator": "all cohort cases, including unscorable profiles and absent targets", + "marker_resolution": true, + "resolution_policy": "explicit_v1", + "local_lexical": false, + "lexical_limit": 20, + "lexical_min_jaccard": 0.5 + }, + "candidate_count": 826, + "marker_resolution_issues": [ + { + "marker": "CD15", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD16", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD1D-A-GALCER", + "reason": "policy_withheld", + "representation": "reagent_gate", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein." + }, + { + "marker": "CD3", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD57", + "reason": "policy_withheld", + "representation": "reagent_gate", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein." + }, + { + "marker": "CD8", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "HLA-DR", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "IGA", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGD", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGE", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGG", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "IGM", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "MR1", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "TCR", + "reason": "policy_withheld", + "representation": "protein_family", + "rationale": "Registry notes document a non-single-protein or pan-marker representation." + }, + { + "marker": "TCRVA24-JA18", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "TCRAB", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "TCRGD", + "reason": "policy_withheld", + "representation": "complex", + "rationale": "Registry notes describe an assembled or multi-gene marker; component PRO identity cannot establish whole-marker equivalence." + }, + { + "marker": "TETRAMER", + "reason": "policy_withheld", + "representation": "reagent_gate", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein." + }, + { + "marker": "V", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + }, + { + "marker": "DELTA", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + }, + { + "marker": "DELTA1", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + }, + { + "marker": "GAMMA", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "No PRO identity recorded; possible source artifact or unresolved marker requires clarification." + } + ], + "cases": [ + { + "case_id": "provisional/SOULCAP:SC000001/Exact", + "cohort": "provisional", + "subject_id": "SOULCAP:SC000001", + "match_type": "Exact", + "targets": [ + "CL:0000623" + ], + "evidence_reference": "mappings/curated_mappings.tsv", + "uncertain": false, + "rank": 6, + "rank_best": 6, + "rank_worst": 32, + "missing_targets": [], + "candidates": [ + { + "cl_id": "CL:0002338", + "label": "CD56-positive, CD161-positive immature natural killer cell, human", + "score": 19, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD34-", + "CD19-", + "CD56+ (1 of 2 alt.)" + ], + "gaps": [ + "CD3-", + "CD45+", + "CD127-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD123-", + "CD33-/CD64- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 3, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [ + { + "sense": "negative", + "pr": "PR:000001002", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD19", + "tokens": [ + "CD19" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001002", + "tokens": [ + "CD19" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001003", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD34", + "tokens": [ + "CD34" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001003", + "tokens": [ + "CD34" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001020", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + }, + { + "via": "exact_alias", + "source_token": "CD3E", + "tokens": [ + "CD3E" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001289", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD20", + "tokens": [ + "CD20" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001289", + "tokens": [ + "CD20" + ] + } + ] + }, + { + "sense": "negative", + "pr": "PR:000001889", + "asserted": "False", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD14", + "tokens": [ + "CD14" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001889", + "tokens": [ + "CD14" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001024", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD56", + "tokens": [ + "CD56" + ] + }, + { + "via": "pro_id", + "pr": "PR:000001024", + "tokens": [ + "CD56" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001381", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD122", + "tokens": [ + "CD122" + ] + } + ] + }, + { + "sense": "positive", + "pr": "PR:000001874", + "asserted": "True", + "paths": [] + }, + { + "sense": "positive", + "pr": "PR:000002065", + "asserted": "True", + "paths": [ + { + "via": "exact_alias", + "source_token": "CD117", + "tokens": [ + "CD117" + ] 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"target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000069/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000070/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000071/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000072/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000073/Exact", + "change": "regressed", + "before_rank": 1, + "after_rank": 117, + "before_status": "hit_at_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000074/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000082/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000085/Exact", + "change": "regressed", + "before_rank": 239, + "after_rank": 247, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000087/Exact", + "change": "improved", + "before_rank": 252, + "after_rank": 249, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000089/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000092/Exact", + "change": "improved", + "before_rank": 253, + "after_rank": 250, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000096/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000099/Exact", + "change": "regressed", + "before_rank": 239, + "after_rank": 247, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000103/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + } + ] + }, + "status": "current_local_snapshot", + "differences": [] + } +} diff --git a/reports/resolver-refinement/audit/audit_summary.md b/reports/resolver-refinement/audit/audit_summary.md new file mode 100644 index 0000000..4f5593a --- /dev/null +++ b/reports/resolver-refinement/audit/audit_summary.md @@ -0,0 +1,159 @@ +# SOULCAP mapping audit + +Generated: 2026-09-11T04:13:52.853363+00:00 +Mapping evidence resolution: explicit_marker_policy + +[Open dashboard](audit_dashboard.html) · [Audit data](audit_data.json) + +- registered entities: 127 +- source rows: 127 +- mapping records: 80 +- source entities with proposals: 80 +- source entities without proposals: 47 +- unresolved source rows: 0 +- uncertain proposals: 8 +- invalid marker cells: 26 +- invalid profile rows: 23 +- evidence statuses: {"partial_support": 54, "invalid_profile": 6, "no_marker_support": 20} +- review statuses: {"needs_review": 80} +- marker statuses: {"mapped": 55, "no_gene_mapping": 3, "documented_nonprotein_or_reagent": 3, "documented_complex_or_family": 10, "source_artifact_needs_review": 4} +- gap records: 17 +- finding severities: {"error": 23, "warning": 8, "info": 81} + +## Provenance + +```json +{ + "export_inputs": "match", + "differences": [], + "upstream_checked": false, + "agreement": "historical_without_ids", + "ontology_snapshot_date": "2026-06-29", + "ontology_age_days": 74, + "export_decisions": "match", + "export_evidence": "different_resolution_mode" +} +``` + +## Review queue + +- error / invalid_profile / SOULCAP:SC000017: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000018: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000019: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000020: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000059: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000074: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000075: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000076: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000077: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000078: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000079: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000107: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000109: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000110: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000111: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000112: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000113: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000114: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000123: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000124: 2 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000125: 1 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000126: 2 marker cell(s) cannot be scored. +- error / invalid_profile / SOULCAP:SC000127: 2 marker cell(s) cannot be scored. +- warning / uncertain_proposal / SOULCAP:SC000006: Proposal for CL:0001074 is explicitly uncertain. +- warning / uncertain_proposal / SOULCAP:SC000064: Proposal for CL:0000789 is explicitly uncertain. +- warning / uncertain_proposal / SOULCAP:SC000065: Proposal for CL:0000084 is explicitly uncertain. +- warning / uncertain_proposal / SOULCAP:SC000068: Proposal for CL:0000789 is explicitly uncertain. +- warning / uncertain_proposal / SOULCAP:SC000069: Proposal for CL:0000789 is explicitly uncertain. +- warning / uncertain_proposal / SOULCAP:SC000070: Proposal for CL:0000798 is explicitly uncertain. +- warning / uncertain_proposal / SOULCAP:SC000071: Proposal for CL:0000798 is explicitly uncertain. +- warning / uncertain_proposal / SOULCAP:SC000072: Proposal for CL:0000798 is explicitly uncertain. +- info / evidence_not_recorded / SOULCAP:SC000001: CL:0000623: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000002: CL:0000938: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000003: CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000004: CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000005: CL:0000939: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000006: CL:0001074: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000007: CL:0001065: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000008: CL:0001067: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000009: CL:0001081: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000010: CL:0001078: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000011: CL:0000990: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000012: CL:0002394: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000013: CL:0002399: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000014: CL:0001058: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000015: CL:0000043: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000016: CL:0000043: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000017: CL:0000576: structured fields empty: literature_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000018: CL:0000860: structured fields empty: literature_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000019: CL:0000875: structured fields empty: literature_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000020: CL:0002393: structured fields empty: literature_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000021: CL:0000775: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000022: CL:0000771: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000023: CL:0000236: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000024: CL:0000946: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000025: CL:0000980: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000026: CL:0000786: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000028: CL:0000818: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000029: CL:0000785: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000030: CL:0000960: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000031: CL:0000788: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000032: CL:0000981: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000033: CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000034: CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000035: CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000036: CL:0000981: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000037: CL:0000787: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000039: CL:0000970: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000040: CL:0000971: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000041: CL:0000972: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000042: CL:0000973: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000043: CL:0000979: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000044: CL:0000948: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000045: CL:0000084: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000046: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000047: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000048: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000049: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000050: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000051: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000052: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000053: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000054: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000055: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000056: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000057: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000058: CL:4052055: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000059: CL:0000814: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000060: CL:0000789: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000061: CL:0000798: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000062: CL:0000624: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000063: CL:0000625: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000064: CL:0000789: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000065: CL:0000084: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000066: CL:0000624: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000067: CL:0000625: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000068: CL:0000789: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000069: CL:0000789: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000070: CL:0000798: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000071: CL:0000798: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000072: CL:0000798: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000073: CL:0000803: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000074: CL:0000940: structured fields empty: lexical_evidence, literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000082: CL:0000904: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000085: CL:0000907: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000087: CL:0000898: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000089: CL:0000895: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000092: CL:0000900: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000096: CL:0000905: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000099: CL:0000913: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / evidence_not_recorded / SOULCAP:SC000103: CL:4030002: structured fields empty: literature_evidence, curator_evidence. Legacy narrative may contain evidence. +- info / historical_agreement / Agreement report: Not joined to current rows: this cached report has no verified input provenance. + +## Interpretation + +- All mappings remain proposals; marker compatibility does not establish equivalence. +- Marker usage is extracted only from valid cells. Invalid cells can hide additional marker usage. +- Empty structured evidence fields do not mean that literature does not exist; consult the narrative. +- CL reverse view covers proposed targets, not the entire Cell Ontology. +- No upstream services were queried. Snapshot age is not proof that an ontology is outdated. diff --git a/reports/resolver-refinement/enhanced.sssom.md b/reports/resolver-refinement/enhanced.sssom.md new file mode 100644 index 0000000..b47c6e7 --- /dev/null +++ b/reports/resolver-refinement/enhanced.sssom.md @@ -0,0 +1,1568 @@ +# Candidate CL mappings + +Generated from mappings/curated_mappings.tsv by soulcap-sssom. +All entries are proposals. Marker compatibility alone does not establish equivalence. +Evidence uses CD synonym tokens in the local CL-PRO snapshot; species, tissue, and unrepresented markers still require review. +Numeric confidence is omitted pending calibration. Blank evidence fields mean evidence has not been captured in the registry. +Original detailed rationale: [narrative](candidate_cl_mappings_narrative.md). + +| SOULCAP ID | Cell type | CL ID | Relation | Marker evidence | Review | +|---|---|---|---|---|---| +| SOULCAP:SC000001 | Natural Killer Cell | CL:0000623 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000002 | Natural Killer Cell 2 | CL:0000938 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000003 | Cytotoxic Natural Killer Cell | CL:0000939 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000004 | Natural Killer Cell 1 | CL:0000939 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000005 | Natural Killer Cell 3 | CL:0000939 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000006 | Innate Lymphoid Cell Progenitor | CL:0001074 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000007 | Innate Lymphoid Cell | CL:0001065 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000008 | Innate Lymphoid Cell 1 | CL:0001067 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000009 | Innate Lymphoid Cell 2 | CL:0001081 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000010 | Innate Lymphoid Cell 3 | CL:0001078 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000011 | Conventional Dendritic Cell | CL:0000990 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000012 | Conventional Dendritic Cell 1 | CL:0002394 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000013 | Conventional Dendritic Cell 2 | CL:0002399 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000014 | Plasmacytoid Dendritic Cell | CL:0001058 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000015 | Basophil | CL:0000043 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000016 | Basophil | CL:0000043 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000017 | Monocyte | CL:0000576 | skos:exactMatch | invalid_profile | needs_review | +| SOULCAP:SC000018 | Classical Monocyte | CL:0000860 | skos:exactMatch | invalid_profile | needs_review | +| SOULCAP:SC000019 | Non-classical Monocyte | CL:0000875 | skos:exactMatch | invalid_profile | needs_review | +| SOULCAP:SC000020 | Intermediate Monocyte | CL:0002393 | skos:exactMatch | invalid_profile | needs_review | +| SOULCAP:SC000021 | Neutrophil | CL:0000775 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000022 | Eosinophil | CL:0000771 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000023 | B cell | CL:0000236 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000024 | Antibody Secreting Cell | CL:0000946 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000025 | Plasmablast | CL:0000980 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000026 | Plasma Cell | CL:0000786 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000028 | Transitonal B cell 1 and 2 | CL:0000818 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000029 | Mature B cell | CL:0000785 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000030 | Transitional B cell 3 | CL:0000960 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000031 | Naive B cell | CL:0000788 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000032 | Double Negative B cells | CL:0000981 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000033 | Double Negative B cell 1 | CL:0000981 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000034 | Double Negative B cell 2 | CL:0000981 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000035 | Double Negative B cell 3 | CL:0000981 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000036 | Double Negative B cell 4 | CL:0000981 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000037 | Memory B cell | CL:0000787 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000039 | Unswitched Memory B cell | CL:0000970 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000040 | IgM-only Memory B cell | CL:0000971 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000041 | Switched Memory B cell | CL:0000972 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000042 | IgA-Class Switched B cell | CL:0000973 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000043 | IgG-Class Switched B cell | CL:0000979 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000044 | IgE-Class Switched B cell | CL:0000948 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000045 | T lymphocyte | CL:0000084 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000060 | alpha/beta T cell | CL:0000789 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000061 | gamma/delta T cell | CL:0000798 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000059 | Invariant Natural Killer T cell | CL:0000814 | skos:exactMatch | invalid_profile | needs_review | +| SOULCAP:SC000074 | Mucosal-associated Invariant T cell | CL:0000940 | skos:exactMatch | invalid_profile | needs_review | +| SOULCAP:SC000066 | CD4+ alpha/beta T cell | CL:0000624 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000067 | CD8+ alpha/beta T cell | CL:0000625 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000073 | CD4-/CD8- gamma/delta T cell | CL:0000803 | skos:exactMatch | partial_support | needs_review | +| SOULCAP:SC000062 | alpha/beta and gamma/delta CD4+ T cells | CL:0000624 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000063 | alpha/beta and gamma/delta CD8+ T cells | CL:0000625 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000064 | alpha/beta and gamma/delta CD4+ and CD8+ T cells | CL:0000789 | skos:broadMatch | no_marker_support | needs_review | +| SOULCAP:SC000065 | alpha/beta and gamma/delta CD4- and CD8- T cells | CL:0000084 | skos:broadMatch | no_marker_support | needs_review | +| SOULCAP:SC000068 | CD4+ and CD8+ alpha/beta T cell | CL:0000789 | skos:broadMatch | no_marker_support | needs_review | +| SOULCAP:SC000069 | CD4- and CD8- alpha/beta T cell | CL:0000789 | skos:broadMatch | no_marker_support | needs_review | +| SOULCAP:SC000070 | CD4+ gamma/delta T cell | CL:0000798 | skos:broadMatch | no_marker_support | needs_review | +| SOULCAP:SC000071 | CD8+ gamma/delta T cell | CL:0000798 | skos:broadMatch | no_marker_support | needs_review | +| SOULCAP:SC000072 | CD4+/CD8+ gamma/delta T cell | CL:0000798 | skos:broadMatch | no_marker_support | needs_review | +| SOULCAP:SC000046 | CD56+ T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000047 | CD56+ CD4 T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000048 | CD56+ CD8 T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000049 | CD56+ alpha/beta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000050 | CD56+ CD4+ alpha/beta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000051 | CD56+ CD8+ alpha/beta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000052 | CD56+ CD4+/CD8+ alpha/beta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000053 | CD56+ CD4-/CD8- alpha/beta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000054 | CD56+ gamma/delta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000055 | CD56+ CD4+ gamma/delta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000056 | CD56+ CD8+ gamma/delta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000057 | CD56+ CD4+/CD8+ gamma/delta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000058 | CD56+ CD8-/CD8- gamma/delta T cell | CL:4052055 | skos:broadMatch | partial_support | needs_review | +| SOULCAP:SC000087 | Naive alpha/beta and gamma/delta T cell | CL:0000898 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000089 | CD4+ naive alpha/beta T cell | CL:0000895 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000092 | CD8+ naive alpha/beta T cell | CL:0000900 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000082 | CD4+ central memory alpha/beta T cell | CL:0000904 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000085 | CD8+ central memory alpha/beta T cell | CL:0000907 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000096 | CD4+ effector memory alpha/beta T cell | CL:0000905 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000099 | CD8+ effector memory alpha/beta T cell | CL:0000913 | skos:exactMatch | no_marker_support | needs_review | +| SOULCAP:SC000103 | CD4+ CD45RA+ effector memory alpha/beta T cell | CL:4030002 | skos:exactMatch | no_marker_support | needs_review | + +## SOULCAP:SC000001 — Natural Killer Cell + +Proposed skos:exactMatch to CL:0000623 (natural killer cell). + +CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the defining positive CD56 marker is absent — a documented CL gap (cl_term_issues.md), not confirmed here. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative) [direct]; Required exclusion: CD19:negative [inferred]. + +Gaps: Required exclusion: CD34:negative; Required exclusion: CD3:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD56:positive OR CD56:high); Required phenotypic markers: CD127:negative; Ideal phenotypic markers: (CD33:negative OR CD64:negative). + +Untested cl markers: CD20; CD3E. + + +## SOULCAP:SC000002 — Natural Killer Cell 2 + +Proposed skos:exactMatch to CL:0000938 (CD16-negative, CD56-bright natural killer cell, human). + + + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative) [inferred]; Required exclusion: CD19:negative [inferred]; Required phenotypic markers: CD56:high [direct]. + +Gaps: Required exclusion: CD34:negative; Required exclusion: CD3:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD127:negative; Required phenotypic markers: (CD16:negative OR CD16:low); Required phenotypic markers: CD57:negative. + +Untested cl markers: CD20; CD3E; CD84. + + +## SOULCAP:SC000003 — Cytotoxic Natural Killer Cell + +Proposed skos:exactMatch to CL:0000939 (CD16-positive, CD56-dim natural killer cell, human). + + + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative) [inferred]; Required exclusion: CD19:negative [inferred]; Required phenotypic markers: (CD56:positive OR CD56:high) [direct]. + +Gaps: Required exclusion: CD34:negative; Required exclusion: CD3:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD127:negative; Required phenotypic markers: CD16:positive. + +Untested cl markers: CD20; CD3E. + + +## SOULCAP:SC000004 — Natural Killer Cell 1 + +Proposed skos:broadMatch to CL:0000939 (CD16-positive, CD56-dim natural killer cell, human). + +CL does not distinguish CD57 status within this subtype. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative) [inferred]; Required exclusion: CD19:negative [inferred]; Required phenotypic markers: CD56:positive [direct]. + +Gaps: Required exclusion: CD34:negative; Required exclusion: CD3:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD127:negative; Required phenotypic markers: CD16:positive; Required phenotypic markers: CD57:negative. + +Untested cl markers: CD20; CD3E. + + +## SOULCAP:SC000005 — Natural Killer Cell 3 + +Proposed skos:broadMatch to CL:0000939 (CD16-positive, CD56-dim natural killer cell, human). + +CL does not distinguish CD57 status within this subtype. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative) [inferred]; Required exclusion: CD19:negative [inferred]; Required phenotypic markers: CD56:positive [direct]. + +Gaps: Required exclusion: CD34:negative; Required exclusion: CD3:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD127:negative; Required phenotypic markers: CD16:positive; Required phenotypic markers: CD57:positive. + +Untested cl markers: CD20; CD3E. + + +## SOULCAP:SC000006 — Innate Lymphoid Cell Progenitor + +Proposed skos:broadMatch to CL:0001074 (CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human). + +SOULCAP profile does not test CD34; CL:0001073 (CD34-negative) and CL:0001082 (immature innate lymphoid cell) are equally marker-consistent alternatives, not ruled out. + +Uncertain proposal: yes. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [inferred]; Required phenotypic markers: CD117:positive [inferred]. + +Gaps: Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:negative; Required phenotypic markers: CD127:positive; Required phenotypic markers: CD294:negative. + +Untested cl markers: CD19; CD34; CD3E. + + +## SOULCAP:SC000007 — Innate Lymphoid Cell + +Proposed skos:exactMatch to CL:0001065 (innate lymphoid cell). + +Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, not CL-marker-supported. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD19:negative [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD34:negative; Required exclusion: CD3:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD127:positive. + +Untested cl markers: CD3E. + + +## SOULCAP:SC000008 — Innate Lymphoid Cell 1 + +Proposed skos:exactMatch to CL:0001067 (group 1 innate lymphoid cell). + +Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only. No human-specific CL term exists for group 1 (unlike group 2/3); filed as CL gap, repo issue #14. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD19:negative [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD34:negative; Required exclusion: CD3:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD127:positive; Required phenotypic markers: CD56:negative; Required phenotypic markers: CD117:negative; Required phenotypic markers: CD294:negative. + +Untested cl markers: CD3E. + + +## SOULCAP:SC000009 — Innate Lymphoid Cell 2 + +Proposed skos:exactMatch to CL:0001081 (group 2 innate lymphoid cell, human). + +Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had picked the wrong-species term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD19:negative [inferred]; Required phenotypic markers: CD127:positive [inferred]; Required phenotypic markers: CD294:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD34:negative; Required exclusion: CD3:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD56:negative; Required phenotypic markers: (CD117:low OR CD117:negative). + +Untested cl markers: CD161; CD25; CD3E; CDW127. + + +## SOULCAP:SC000010 — Innate Lymphoid Cell 3 + +Proposed skos:exactMatch to CL:0001078 (group 3 innate lymphoid cell, human). + +Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had over-specified to an NKp44+ subtype. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD19:negative [inferred]; Required phenotypic markers: CD127:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD34:negative; Required exclusion: CD3:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD56:low OR CD56:negative); Required phenotypic markers: CD117:positive; Required phenotypic markers: CD294:negative. + +Untested cl markers: CD3E; CDW127. + + +## SOULCAP:SC000011 — Conventional Dendritic Cell + +Proposed skos:exactMatch to CL:0000990 (conventional dendritic cell). + +Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Ideal exclusion: CD19:negative [inferred]; Ideal exclusion: CD56:negative [inferred]; Required phenotypic markers: CD11C:high [direct]. + +Gaps: Required exclusion: (CD123:not:high OR CD193:negative); Required exclusion: (CD123:not:high OR CD303:negative); Required exclusion: CD14:negative; Required exclusion: CD16:negative; Ideal exclusion: CD3:negative; Ideal exclusion: CD127:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD33:high OR CD64:positive); Required phenotypic markers: HLA-DR:positive. + +Untested cl markers: CD11; CD20; CD34; CD3E. + + +## SOULCAP:SC000012 — Conventional Dendritic Cell 1 + +Proposed skos:exactMatch to CL:0002394 (CD141-positive myeloid dendritic cell). + +Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had wrongly assigned cDC1 the same term as cDC2. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: (CD123:not:high OR CD193:negative) [inferred]; Required exclusion: (CD123:not:high OR CD303:negative) [inferred]; Ideal exclusion: CD19:negative [inferred]; Ideal exclusion: CD56:negative [inferred]; Required phenotypic markers: CD11C:high [inferred]; Required phenotypic markers: CD141:positive [direct]. + +Gaps: Required exclusion: CD14:negative; Required exclusion: CD16:negative; Ideal exclusion: CD3:negative; Ideal exclusion: CD127:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD33:high OR CD64:positive); Required phenotypic markers: HLA-DR:positive; Required phenotypic markers: CD1C:negative; Ideal phenotypic markers: CD172A:negative; Ideal phenotypic markers: FCER1A:negative. + +Untested cl markers: CD11; CD20; CD34; CD3E. + + +## SOULCAP:SC000013 — Conventional Dendritic Cell 2 + +Proposed skos:exactMatch to CL:0002399 (CD1c-positive myeloid dendritic cell). + +Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed correct by cross-check against cDC1. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: (CD123:not:high OR CD193:negative) [inferred]; Required exclusion: (CD123:not:high OR CD303:negative) [inferred]; Ideal exclusion: CD19:negative [inferred]; Ideal exclusion: CD56:negative [inferred]; Required phenotypic markers: CD11C:high [inferred]; Required phenotypic markers: CD1C:positive [direct]. + +Gaps: Required exclusion: CD14:negative; Required exclusion: CD16:negative; Ideal exclusion: CD3:negative; Ideal exclusion: CD127:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD33:high OR CD64:positive); Required phenotypic markers: HLA-DR:positive; Required phenotypic markers: (CD141:low OR CD141:negative); Ideal phenotypic markers: CD172A:positive; Ideal phenotypic markers: (FCER1A:low OR FCER1A:negative). + +Untested cl markers: CD11; CD20; CD34; CD3E. + + +## SOULCAP:SC000014 — Plasmacytoid Dendritic Cell + +Proposed skos:exactMatch to CL:0001058 (plasmacytoid dendritic cell, human). + +Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only. Sheet's Full Name reads 'Peripheral Dendritic Cell' (likely a typo for 'Plasmacytoid'); not yet corrected at source. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Ideal exclusion: CD56:negative [inferred]; Ideal exclusion: CD19:negative [inferred]; Ideal exclusion: CD14:negative [direct]. + +Gaps: Required exclusion: CD3:negative; Ideal exclusion: CD127:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD33:low OR CD33:positive OR CD123:high); Required phenotypic markers: (CD193:negative OR FCER1A:negative OR CD303:positive). + +Untested cl markers: CD11; CD11C; CD20; CD34; CD3E. + + +## SOULCAP:SC000015 — Basophil + +Proposed skos:exactMatch to CL:0000043 (mature basophil). + + + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Ideal exclusion: CD56:negative [inferred]; Ideal exclusion: CD19:negative [inferred]; Required phenotypic markers: (CD33:positive OR CD123:positive) [inferred]; Required phenotypic markers: (CD193:positive OR FCER1A:positive OR HLA-DR:negative OR CD303:negative) [inferred]; Ideal phenotypic markers: FCER1A:positive [inferred]. + +Gaps: Required exclusion: CD3:negative; Ideal exclusion: CD127:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD14:negative; Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Ideal phenotypic markers: HLA-DR:negative. + +Untested cl markers: CD11; CD11B; CD154; CD203C; CD3E; CD40; CD40LG; CD67; CD87; CD8A. + + +## SOULCAP:SC000016 — Basophil + +Proposed skos:exactMatch to CL:0000043 (mature basophil). + + + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Ideal exclusion: CD56:negative [inferred]; Ideal exclusion: CD19:negative [inferred]; Required phenotypic markers: CD193:positive [inferred]; Required phenotypic markers: CD123:positive [inferred]. + +Gaps: Required exclusion: CD3:negative; Required exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD127:negative; Required phenotypic markers: CD45:positive. + +Untested cl markers: CD11; CD11B; CD154; CD203C; CD3E; CD40; CD40LG; CD67; CD87; CD8A; FCER1A. + + +## SOULCAP:SC000017 — Monocyte + +Proposed skos:exactMatch to CL:0000576 (monocyte). + +OAK-verified exact label match (OLS4 was timing out); CL:0000576 has no marker axioms recorded at all. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID. + +Uncertain proposal: no. +Marker evidence: invalid_profile. +Curator evidence: Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.. +Current sheet mapping: agrees CL:0000576. +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Errors: Required exclusion: unexpected ')' in group. + + +## SOULCAP:SC000018 — Classical Monocyte + +Proposed skos:exactMatch to CL:0000860 (classical monocyte). + +OAK-verified exact label match. CL:0000860 asserts only CCR2 (CD192) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID. + +Uncertain proposal: no. +Marker evidence: invalid_profile. +Curator evidence: Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.. +Current sheet mapping: agrees CL:0000860. +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Errors: Required exclusion: unexpected ')' in group. + + +## SOULCAP:SC000019 — Non-classical Monocyte + +Proposed skos:exactMatch to CL:0000875 (non-classical monocyte). + +OAK-verified exact label match. CL:0000875 asserts only CX3CR1 and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID. + +Uncertain proposal: no. +Marker evidence: invalid_profile. +Curator evidence: Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.. +Current sheet mapping: agrees CL:0000875. +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Errors: Required exclusion: unexpected ')' in group. + + +## SOULCAP:SC000020 — Intermediate Monocyte + +Proposed skos:exactMatch to CL:0002393 (intermediate monocyte). + +OAK-verified exact label match. CL:0002393 asserts only CCR2 (CD192, negative) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID. + +Uncertain proposal: no. +Marker evidence: invalid_profile. +Curator evidence: Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification.. +Current sheet mapping: agrees CL:0002393. +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Errors: Required exclusion: unexpected ')' in group. + + +## SOULCAP:SC000021 — Neutrophil + +Proposed skos:exactMatch to CL:0000775 (neutrophil). + + + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD56:negative [inferred]; Ideal exclusion: CD19:negative [inferred]; Required phenotypic markers: (CD15:high OR CD66B:positive) [inferred]. + +Gaps: Required exclusion: CD3:negative; Required exclusion: (CD14:low OR CD14:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Required phenotypic markers: CD45:positive; Required phenotypic markers: CD193:negative; Required phenotypic markers: CD16:high; Ideal phenotypic markers: (CD64:negative OR CD33:positive). + +Untested cl markers: CD11; CD11B; CD3E; CD67; CD87; CD8A. + + +## SOULCAP:SC000022 — Eosinophil + +Proposed skos:exactMatch to CL:0000771 (eosinophil). + +CD193 (CCR3) positive is directly asserted (not inferred) on CL:0000771, precisely matching SOULCAP's defining CD193+ requirement — one of the stronger marker-confirmed matches in this set. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required exclusion: CD56:negative [inferred]; Ideal exclusion: CD19:negative [inferred]; Required phenotypic markers: (CD15:high OR CD66B:positive) [inferred]; Required phenotypic markers: CD193:positive [direct]. + +Gaps: Required exclusion: CD3:negative; Required exclusion: (CD14:low OR CD14:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Required phenotypic markers: CD45:positive; Required phenotypic markers: CD16:negative; Ideal phenotypic markers: (CD64:negative OR CD33:positive). + +Untested cl markers: CD11; CD11B; CD191; CD3E; CD44; CD67; CD69; CD87; CD8A; CD9; CDW44. + + +## SOULCAP:SC000023 — B cell + +Proposed skos:exactMatch to CL:0000236 (B cell). + +OLS4 REST search returned zero hits for this exact query; found instead via OAK. CL:0000236 has no marker axioms recorded. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD20:positive OR CD19:positive); Ideal phenotypic markers: CD20:positive. + + +## SOULCAP:SC000024 — Antibody Secreting Cell + +Proposed skos:exactMatch to CL:0000946 (antibody secreting cell). + +Lexical match; marker scoring found nothing useful (mouse B220-nomenclature terms scored highest instead). + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD19:positive; Required phenotypic markers: (CD27:positive OR CD27:high); Required phenotypic markers: CD38:high; Ideal phenotypic markers: (CD20:low OR CD20:negative). + + +## SOULCAP:SC000025 — Plasmablast + +Proposed skos:exactMatch to CL:0000980 (plasmablast). + +Lexical match; marker scoring found nothing useful. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD19:positive [inferred]; Required phenotypic markers: (CD27:positive OR CD27:high) [direct]; Required phenotypic markers: CD38:high [direct]; Required phenotypic markers: CD138:negative [direct]; Ideal phenotypic markers: (CD20:low OR CD20:negative) [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive. + +Untested cl markers: CD27L; CD3E. + + +## SOULCAP:SC000026 — Plasma Cell + +Proposed skos:exactMatch to CL:0000786 (plasma cell). + +Lexical match; marker scoring found nothing useful. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD138:positive [direct]; Ideal phenotypic markers: CD20:negative [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD19:positive; Required phenotypic markers: (CD27:positive OR CD27:high); Required phenotypic markers: CD38:high. + + +## SOULCAP:SC000028 — Transitonal B cell 1 and 2 + +Proposed skos:broadMatch to CL:0000818 (transitional stage B cell). + +SOULCAP combines T1+T2 into one gate; CL keeps CL:0000958 (T1) and CL:0000959 (T2) separate under this parent term. Sheet's Full Name has a typo ('Transitonal'). + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: (CD20:positive OR CD19:positive) [direct]; Required phenotypic markers: (CD38:high OR CD10:high) [direct]; Required phenotypic markers: CD24:high [direct]; Ideal phenotypic markers: CD20:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD27:negative. + +Untested cl markers: CD3E. + + +## SOULCAP:SC000029 — Mature B cell + +Proposed skos:exactMatch to CL:0000785 (mature B cell). + +Lexical match; marker scoring found nothing useful. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD27:negative; Required phenotypic markers: (CD38:low OR CD38:negative); Ideal phenotypic markers: CD20:positive. + +Untested cl markers: CD3E. + + +## SOULCAP:SC000030 — Transitional B cell 3 + +Proposed skos:exactMatch to CL:0000960 (T3 B cell). + +Lexical match; marker scoring found nothing useful. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD24:positive [inferred]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD27:negative; Required phenotypic markers: (CD38:low OR CD38:negative OR CD10:low); Required phenotypic markers: IGD:positive. + +Untested cl markers: CD21; CD23; CD3E; CD62; CD62L. + + +## SOULCAP:SC000031 — Naive B cell + +Proposed skos:exactMatch to CL:0000788 (naive B cell). + +Lexical match; marker scoring found nothing useful. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: (CD20:positive OR CD19:positive) [direct]; Required phenotypic markers: CD27:negative [direct]; Ideal phenotypic markers: CD20:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative OR CD10:negative); Required phenotypic markers: CD24:negative; Required phenotypic markers: IGD:positive. + +Untested cl markers: CD27L; CD3E. + + +## SOULCAP:SC000032 — Double Negative B cells + +Proposed skos:exactMatch to CL:0000981 (double negative memory B cell). + +OAK-verified; batch lexical search had wrongly picked CL:0002103, an IgG-positive-specific child term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:negative [direct]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative OR CD10:negative); Required phenotypic markers: CD24:negative; Required phenotypic markers: IGD:negative. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000033 — Double Negative B cell 1 + +Proposed skos:broadMatch to CL:0000981 (double negative memory B cell). + +No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:negative [direct]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative OR CD10:negative); Required phenotypic markers: CD24:positive; Required phenotypic markers: IGD:negative; Required phenotypic markers: CD21:positive; Required phenotypic markers: CD11C:negative; Required phenotypic markers: CD185:positive; Required phenotypic markers: IGE:negative. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000034 — Double Negative B cell 2 + +Proposed skos:broadMatch to CL:0000981 (double negative memory B cell). + +No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:negative [direct]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative OR CD10:negative); Required phenotypic markers: CD24:negative; Required phenotypic markers: IGD:negative; Required phenotypic markers: CD21:negative; Required phenotypic markers: CD11C:positive; Required phenotypic markers: CD185:negative. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000035 — Double Negative B cell 3 + +Proposed skos:broadMatch to CL:0000981 (double negative memory B cell). + +No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:negative [direct]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative OR CD10:negative); Required phenotypic markers: CD24:positive; Required phenotypic markers: IGD:negative; Required phenotypic markers: CD21:negative; Required phenotypic markers: CD11C:negative; Required phenotypic markers: CD185:negative. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000036 — Double Negative B cell 4 + +Proposed skos:broadMatch to CL:0000981 (double negative memory B cell). + +No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:negative [direct]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative OR CD10:negative); Required phenotypic markers: CD24:positive; Required phenotypic markers: IGD:negative; Required phenotypic markers: CD21:positive; Required phenotypic markers: CD11C:negative; Required phenotypic markers: CD185:positive; Required phenotypic markers: IGE:positive. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000037 — Memory B cell + +Proposed skos:exactMatch to CL:0000787 (memory B cell). + +Lexical match; marker scoring found nothing useful. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: (CD20:positive OR CD19:positive) [direct]; Ideal phenotypic markers: CD20:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD27:positive; Required phenotypic markers: (CD38:low OR CD38:negative). + +Untested cl markers: CD138; CD3E. + + +## SOULCAP:SC000039 — Unswitched Memory B cell + +Proposed skos:exactMatch to CL:0000970 (unswitched memory B cell). + +Lexical match, OAK-confirmed. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:positive [direct]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative); Required phenotypic markers: IGD:positive; Required phenotypic markers: IGM:positive. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000040 — IgM-only Memory B cell + +Proposed skos:exactMatch to CL:0000971 (IgM memory B cell). + +Lexical match, OAK-confirmed. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD27:positive; Required phenotypic markers: (CD38:low OR CD38:negative); Required phenotypic markers: IGD:negative; Required phenotypic markers: IGM:positive. + +Untested cl markers: CD138; CD3E. + + +## SOULCAP:SC000041 — Switched Memory B cell + +Proposed skos:exactMatch to CL:0000972 (class switched memory B cell). + +OAK-verified; batch lexical search had wrongly picked CL:0002117, an IgG-negative-specific child term (too narrow for the general Switched parent, which shouldn't exclude any Ig class). + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:positive [direct]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative); Required phenotypic markers: IGD:negative; Required phenotypic markers: IGM:negative. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000042 — IgA-Class Switched B cell + +Proposed skos:exactMatch to CL:0000973 (IgA memory B cell). + +Lexical match, OAK-confirmed. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:positive [inferred]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative); Required phenotypic markers: IGD:negative; Required phenotypic markers: IGM:negative; Required phenotypic markers: IGA:positive; Required phenotypic markers: IGG:negative; Required phenotypic markers: IGE:negative. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000043 — IgG-Class Switched B cell + +Proposed skos:exactMatch to CL:0000979 (IgG memory B cell). + +OAK-verified; batch lexical search had wrongly picked CL:0002117 'IgG-negative class switched memory B cell' — the opposite polarity of what this row defines. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:positive [inferred]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative); Required phenotypic markers: IGD:negative; Required phenotypic markers: IGM:negative; Required phenotypic markers: IGA:negative; Required phenotypic markers: IGG:positive; Required phenotypic markers: IGE:negative. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000044 — IgE-Class Switched B cell + +Proposed skos:exactMatch to CL:0000948 (IgE memory B cell). + +Lexical match, OAK-confirmed. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: (CD20:positive OR CD19:positive) [inferred]; Required phenotypic markers: CD27:positive [inferred]; Ideal phenotypic markers: CD20:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: CD3:negative; Required exclusion: CD56:negative; Ideal exclusion: CD127:negative; Ideal exclusion: CD16:negative; Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: CD123:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: (CD38:low OR CD38:negative); Required phenotypic markers: IGD:negative; Required phenotypic markers: IGM:negative; Required phenotypic markers: IGA:negative; Required phenotypic markers: IGG:negative; Required phenotypic markers: IGE:positive. + +Untested cl markers: CD138; CD27L; CD3E. + + +## SOULCAP:SC000045 — T lymphocyte + +Proposed skos:exactMatch to CL:0000084 (T cell). + +OAK-verified; marker scoring returned unrelated myeloid terms. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive. + + +## SOULCAP:SC000060 — alpha/beta T cell + +Proposed skos:exactMatch to CL:0000789 (alpha-beta T cell). + +OAK-verified; marker scoring returned unrelated myeloid terms. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative). + + +## SOULCAP:SC000061 — gamma/delta T cell + +Proposed skos:exactMatch to CL:0000798 (gamma-delta T cell). + +OAK-verified; marker scoring returned unrelated myeloid terms. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive). + + +## SOULCAP:SC000059 — Invariant Natural Killer T cell + +Proposed skos:exactMatch to CL:0000814 (mature NK T cell). + +OAK-verified. Same term flagged in repo issue #13 for a rename to 'iNKT cell' (filed upstream, awaiting review) — mapping is correct either way. + +Uncertain proposal: no. +Marker evidence: invalid_profile. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Errors: Required phenotypic markers: mixed '|' and space in a group. + + +## SOULCAP:SC000074 — Mucosal-associated Invariant T cell + +Proposed skos:exactMatch to CL:0000940 (mucosal-associated invariant T cell). + +Lexical match, OAK-confirmed. + +Uncertain proposal: no. +Marker evidence: invalid_profile. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Errors: Required phenotypic markers: mixed '|' and space in a group. + + +## SOULCAP:SC000066 — CD4+ alpha/beta T cell + +Proposed skos:exactMatch to CL:0000624 (CD4-positive, alpha-beta T cell). + +OAK-verified. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD4:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative); Required phenotypic markers: CD8:negative. + + +## SOULCAP:SC000067 — CD8+ alpha/beta T cell + +Proposed skos:exactMatch to CL:0000625 (CD8-positive, alpha-beta T cell). + +OAK-verified. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD4:negative [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative); Required phenotypic markers: CD8:positive. + +Untested cl markers: CD8A. + + +## SOULCAP:SC000073 — CD4-/CD8- gamma/delta T cell + +Proposed skos:exactMatch to CL:0000803 (CD4-negative, CD8-negative gamma-delta T cell). + +OAK-verified; double-negative is the classical gamma-delta T cell phenotype. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD4:negative [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive); Required phenotypic markers: CD8:negative. + +Untested cl markers: CD8A. + + +## SOULCAP:SC000062 — alpha/beta and gamma/delta CD4+ T cells + +Proposed skos:broadMatch to CL:0000624 (CD4-positive, alpha-beta T cell). + +CL has no combined alpha-beta+gamma-delta CD4+ term; alpha-beta dominates the CD4+ compartment. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD4:positive [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: CD8:negative. + + +## SOULCAP:SC000063 — alpha/beta and gamma/delta CD8+ T cells + +Proposed skos:broadMatch to CL:0000625 (CD8-positive, alpha-beta T cell). + +Same reasoning as CD4+ T cell. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD4:negative [direct]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: CD8:positive. + +Untested cl markers: CD8A. + + +## SOULCAP:SC000064 — alpha/beta and gamma/delta CD4+ and CD8+ T cells + +Proposed skos:broadMatch to CL:0000789 (alpha-beta T cell). + +No CD4+CD8+ double-positive CL term found at all; peripheral DP T cells are themselves biologically unusual. + +Uncertain proposal: yes. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000065 — alpha/beta and gamma/delta CD4- and CD8- T cells + +Proposed skos:broadMatch to CL:0000084 (T cell). + +No peripheral (non-thymic) double-negative term spanning both TCR types; only a thymocyte-stage term exists (wrong tissue). + +Uncertain proposal: yes. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: CD4:negative; Required phenotypic markers: CD8:negative. + + +## SOULCAP:SC000068 — CD4+ and CD8+ alpha/beta T cell + +Proposed skos:broadMatch to CL:0000789 (alpha-beta T cell). + +No CD4+CD8+ double-positive alpha-beta term found. + +Uncertain proposal: yes. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative); Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000069 — CD4- and CD8- alpha/beta T cell + +Proposed skos:broadMatch to CL:0000789 (alpha-beta T cell). + +Only CL:0002489 'double negative thymocyte' found — wrong tissue/maturity stage for a blood/PBMC panel. + +Uncertain proposal: yes. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative); Required phenotypic markers: CD4:negative; Required phenotypic markers: CD8:negative. + + +## SOULCAP:SC000070 — CD4+ gamma/delta T cell + +Proposed skos:broadMatch to CL:0000798 (gamma-delta T cell). + +CD4+ gamma-delta T cells are atypical/rare; no CL term found. + +Uncertain proposal: yes. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive); Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:negative. + + +## SOULCAP:SC000071 — CD8+ gamma/delta T cell + +Proposed skos:broadMatch to CL:0000798 (gamma-delta T cell). + +No CD8+-specific gamma-delta CL term found. + +Uncertain proposal: yes. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive); Required phenotypic markers: CD4:negative; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000072 — CD4+/CD8+ gamma/delta T cell + +Proposed skos:broadMatch to CL:0000798 (gamma-delta T cell). + +No CD4+CD8+ double-positive gamma-delta term found. + +Uncertain proposal: yes. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive); Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000046 — CD56+ T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive. + + +## SOULCAP:SC000047 — CD56+ CD4 T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000048 — CD56+ CD8 T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: CD4:negative; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000049 — CD56+ alpha/beta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative). + + +## SOULCAP:SC000050 — CD56+ CD4+ alpha/beta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative); Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:negative. + + +## SOULCAP:SC000051 — CD56+ CD8+ alpha/beta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative); Required phenotypic markers: CD4:negative; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000052 — CD56+ CD4+/CD8+ alpha/beta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative); Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000053 — CD56+ CD4-/CD8- alpha/beta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:positive OR TCRGD:negative); Required phenotypic markers: CD4:negative; Required phenotypic markers: CD8:negative. + + +## SOULCAP:SC000054 — CD56+ gamma/delta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive). + + +## SOULCAP:SC000055 — CD56+ CD4+ gamma/delta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive); Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:negative. + + +## SOULCAP:SC000056 — CD56+ CD8+ gamma/delta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive); Required phenotypic markers: CD4:negative; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000057 — CD56+ CD4+/CD8+ gamma/delta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive); Required phenotypic markers: CD4:positive; Required phenotypic markers: CD8:positive. + + +## SOULCAP:SC000058 — CD56+ CD8-/CD8- gamma/delta T cell + +Proposed skos:broadMatch to CL:4052055 (mature NK T cell, human). + +Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. + +Uncertain proposal: no. +Marker evidence: partial_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: not recorded. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Matched: Required phenotypic markers: CD56:positive [inferred]. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative; Required phenotypic markers: CD45:positive; Required phenotypic markers: CD3:positive; Required phenotypic markers: (TCRAB:negative OR TCRGD:positive); Required phenotypic markers: CD4:negative; Required phenotypic markers: CD8:negative. + + +## SOULCAP:SC000087 — Naive alpha/beta and gamma/delta T cell + +Proposed skos:exactMatch to CL:0000898 (naive T cell). + +OAK-verified; the one generic (non-CD4/CD8-split) differentiation-state term that does exist in CL. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative. + +Untested cl markers: CD127; CD197; CD44; CD45; CD45RA; CD62; CD62L; CDW127; CDW197; CDW44. + + +## SOULCAP:SC000089 — CD4+ naive alpha/beta T cell + +Proposed skos:exactMatch to CL:0000895 (naive thymus-derived CD4-positive, alpha-beta T cell). + +OAK-verified. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative. + +Untested cl markers: CD127; CD197; CD25; CD4; CD44; CD45; CD45RA; CD62; CD62L; CDW127; CDW197; CDW44. + + +## SOULCAP:SC000092 — CD8+ naive alpha/beta T cell + +Proposed skos:exactMatch to CL:0000900 (naive thymus-derived CD8-positive, alpha-beta T cell). + +OAK-verified. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative. + +Untested cl markers: CD127; CD197; CD25; CD4; CD44; CD45; CD45RA; CD62; CD62L; CD8A; CDW127; CDW197; CDW44. + + +## SOULCAP:SC000082 — CD4+ central memory alpha/beta T cell + +Proposed skos:exactMatch to CL:0000904 (central memory CD4-positive, alpha-beta T cell). + +OAK-verified. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative. + +Untested cl markers: CD127; CD197; CD25; CD4; CD45; CD45RA; CD45RO; CDW127; CDW197. + + +## SOULCAP:SC000085 — CD8+ central memory alpha/beta T cell + +Proposed skos:exactMatch to CL:0000907 (central memory CD8-positive, alpha-beta T cell). + +OAK-verified. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative. + +Untested cl markers: CD127; CD197; CD25; CD4; CD45; CD45RA; CD45RO; CD8A; CDW127; CDW197. + + +## SOULCAP:SC000096 — CD4+ effector memory alpha/beta T cell + +Proposed skos:exactMatch to CL:0000905 (effector memory CD4-positive, alpha-beta T cell). + +OAK-verified. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative. + +Untested cl markers: CD127; CD197; CD25; CD4; CD45; CD45RA; CD45RO; CDW127; CDW197. + + +## SOULCAP:SC000099 — CD8+ effector memory alpha/beta T cell + +Proposed skos:exactMatch to CL:0000913 (effector memory CD8-positive, alpha-beta T cell). + +OAK-verified. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative. + +Untested cl markers: CD127; CD197; CD25; CD4; CD45; CD45RA; CD45RO; CD8A; CDW127; CDW197. + + +## SOULCAP:SC000103 — CD4+ CD45RA+ effector memory alpha/beta T cell + +Proposed skos:exactMatch to CL:4030002 (effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated). + +OAK-verified. No CD8+-specific counterpart with this 'terminally differentiated' qualifier was found — see gaps.tsv. + +Uncertain proposal: no. +Marker evidence: no_marker_support. +Curator evidence: not recorded. +Current sheet mapping: not_recorded . +Lexical evidence: Legacy note records OAK verification; no query artifact retained.. +Literature evidence: see legacy narrative; no structured evidence recorded. + +Gaps: Required exclusion: (CD14:negative OR CD33:negative OR CD64:negative); Required exclusion: (CD19:negative OR CD20:negative); Required exclusion: CD123:negative; Ideal exclusion: (HLA-DR:not:positive OR CD11C:not:high); Ideal exclusion: (CD15:negative OR CD66B:negative); Ideal exclusion: CD16:negative. + diff --git a/reports/resolver-refinement/enhanced.sssom.provenance.json b/reports/resolver-refinement/enhanced.sssom.provenance.json new file mode 100644 index 0000000..2325dc1 --- /dev/null +++ b/reports/resolver-refinement/enhanced.sssom.provenance.json @@ -0,0 +1,8 @@ +{ + "data\\marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44", + "mappings\\curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e", + "mappings\\soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8", + "marker_mappings\\marker_protein_gene.csv": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7", + "marker_mappings\\marker_resolution.tsv": "317578b4b7fb1a9837b9a61fa85c2dc1ea6469eab4404b0435476ba4a12a1f84", + "reports\\cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c" +} diff --git a/reports/resolver-refinement/enhanced.sssom.tsv b/reports/resolver-refinement/enhanced.sssom.tsv new file mode 100644 index 0000000..f44b539 --- /dev/null +++ b/reports/resolver-refinement/enhanced.sssom.tsv @@ -0,0 +1,88 @@ +# curie_map: +# CL: http://purl.obolibrary.org/obo/CL_ +# SOULCAP: https://soulcap.org/cell_type/ +# semapv: https://w3id.org/semapv/vocab/ +# skos: http://www.w3.org/2004/02/skos/core# +# license: https://creativecommons.org/licenses/by/4.0/ +# mapping_set_id: https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/blob/main/reports/candidate_cl_mappings.sssom.tsv +subject_id subject_label predicate_id object_id object_label mapping_justification mapping_cardinality comment mapping_tool +SOULCAP:SC000001 Natural Killer Cell skos:exactMatch CL:0000623 natural killer cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:NK"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""CD34:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD56:positive OR CD56:high)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD127:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD33:negative OR CD64:negative)"", ""column"": ""Ideal phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001889"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD19:negative"", ""column"": ""Required exclusion""}], ""profile_sha256"": ""77102d43f9abced8b3efd2e11ad6d91a492bf101ebdb061a1fd67aaaa275c58c"", ""resolution_evidence"": [{""asserted"": ""False"", ""paths"": [{""source_token"": ""CD19"", ""tokens"": [""CD19""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001002"", ""tokens"": [""CD19""], ""via"": ""pro_id""}], ""pr"": ""PR:000001002"", ""sense"": ""negative""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD3E"", ""tokens"": [""CD3E""], ""via"": ""exact_alias""}, {""source_token"": ""CD3E"", ""tokens"": [""CD3E""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001020"", ""sense"": ""negative""}, {""asserted"": ""True"", ""paths"": [{""source_token"": ""CD20"", ""tokens"": [""CD20""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001289"", ""tokens"": [""CD20""], ""via"": ""pro_id""}], ""pr"": ""PR:000001289"", ""sense"": ""negative""}, {""asserted"": ""True"", ""paths"": [{""source_token"": ""CD14"", ""tokens"": [""CD14""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001889"", ""tokens"": [""CD14""], ""via"": ""pro_id""}], ""pr"": ""PR:000001889"", ""sense"": ""negative""}], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD20"", ""CD3E""]}, ""note"": ""CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the defining positive CD56 marker is absent — a documented CL gap (cl_term_issues.md), not confirmed here."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000002 Natural Killer Cell 2 skos:exactMatch CL:0000938 CD16-negative, CD56-bright natural killer cell, human semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": """", ""legacy_subject_id"": ""SOULCAP:NK2"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""CD34:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD127:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD16:negative OR CD16:low)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD57:negative"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001889"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD19:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001024"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""CD56:high"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""a9e05f94e58b7fb289cf2f39044e4e9725e26448a3cd5681102b4c6d61ce1b72"", ""resolution_evidence"": [{""asserted"": ""True"", ""paths"": [{""source_token"": ""CD56"", ""tokens"": [""CD56""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001024"", ""tokens"": [""CD56""], ""via"": ""pro_id""}], ""pr"": ""PR:000001024"", ""sense"": ""high""}, {""asserted"": ""False"", 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""note"": """", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000017 Monocyte skos:exactMatch CL:0000576 monocyte semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""sheet_confirmed"", ""legacy_subject_id"": ""SOULCAP:Mono"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": ""Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification."", ""errors"": [""Required exclusion: unexpected ')' in group""], ""gaps"": [], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""84c375696035c6d7c9de16751255259e8e834ac9287f201f13ed821a7bfdda5d"", ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": ""CL:0000576"", ""sheet_confirmation"": ""agrees"", ""sheet_notes"": """", ""status"": ""invalid_profile"", ""untested_cl_markers"": []}, ""note"": ""OAK-verified exact label match (OLS4 was timing out); CL:0000576 has no marker axioms recorded at all. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000018 Classical Monocyte skos:exactMatch CL:0000860 classical monocyte semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""sheet_confirmed"", ""legacy_subject_id"": ""SOULCAP:CMo"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": ""Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification."", ""errors"": [""Required exclusion: unexpected ')' in group""], ""gaps"": [], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""4c9436c977492d1ccea66ec05a22925897e6235162061f41dbf8e4e09ac940e3"", ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": ""CL:0000860"", ""sheet_confirmation"": ""agrees"", ""sheet_notes"": """", ""status"": ""invalid_profile"", ""untested_cl_markers"": []}, ""note"": ""OAK-verified exact label match. CL:0000860 asserts only CCR2 (CD192) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000019 Non-classical Monocyte skos:exactMatch CL:0000875 non-classical monocyte semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""sheet_confirmed"", ""legacy_subject_id"": ""SOULCAP:NCMo"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": ""Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification."", ""errors"": [""Required exclusion: unexpected ')' in group""], ""gaps"": [], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""2ccb34f2fc50e1126131986d487fe42c67bdcacc16330874b67750b017cbeab0"", ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": ""CL:0000875"", ""sheet_confirmation"": ""agrees"", ""sheet_notes"": """", ""status"": ""invalid_profile"", ""untested_cl_markers"": []}, ""note"": ""OAK-verified exact label match. CL:0000875 asserts only CX3CR1 and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000020 Intermediate Monocyte skos:exactMatch CL:0002393 intermediate monocyte semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""sheet_confirmed"", ""legacy_subject_id"": ""SOULCAP:IntMo"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": ""Sheet confirmation recorded in existing local edits (2026-08); retained without independent re-verification."", ""errors"": [""Required exclusion: unexpected ')' in group""], ""gaps"": [], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""aa79f8b8798d9b79b35cd87edef7133ca5b824636f3f05d0dfe1b990d87d97c3"", ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": ""CL:0002393"", ""sheet_confirmation"": ""agrees"", ""sheet_notes"": """", ""status"": ""invalid_profile"", ""untested_cl_markers"": []}, ""note"": ""OAK-verified exact label match. CL:0002393 asserts only CCR2 (CD192, negative) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. Sheet-confirmed 2026-08: the master Google Sheet's 'OLS CL identifier' column was independently populated with this same CL ID."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000021 Neutrophil skos:exactMatch CL:0000775 neutrophil semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": """", ""legacy_subject_id"": ""SOULCAP:Neutrophil"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(CD14:low OR CD14:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD193:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD16:high"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD64:negative OR CD33:positive)"", ""column"": ""Ideal phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD19:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001332"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""(CD15:high OR CD66B:positive)"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""6a7f385e7dd5e22ba96aeedb4aa46fb2e6ab411bc046567fac5d0aeb3ea7f587"", ""resolution_evidence"": [{""asserted"": ""False"", ""paths"": [{""source_token"": ""CD19"", ""tokens"": [""CD19""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001002"", ""tokens"": [""CD19""], ""via"": ""pro_id""}], ""pr"": ""PR:000001002"", ""sense"": ""negative""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD3E"", ""tokens"": [""CD3E""], ""via"": ""exact_alias""}, {""source_token"": ""CD3E"", ""tokens"": [""CD3E""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001020"", ""sense"": ""negative""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD56"", ""tokens"": [""CD56""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001024"", ""tokens"": [""CD56""], ""via"": ""pro_id""}], ""pr"": ""PR:000001024"", ""sense"": ""negative""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD8A"", ""tokens"": [""CD8A""], ""via"": ""exact_alias""}, {""source_token"": ""CD8A"", ""tokens"": [""CD8A""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001084"", ""sense"": ""negative""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD11"", ""tokens"": [""CD11""], ""via"": ""exact_alias""}, {""source_token"": ""CD11B"", ""tokens"": [""CD11B""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001012"", ""sense"": ""positive""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD66B"", ""tokens"": [""CD66B""], ""via"": ""exact_alias""}, {""source_token"": ""CD67"", ""tokens"": [""CD67""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001332"", ""tokens"": [""CD66B""], ""via"": ""pro_id""}], ""pr"": ""PR:000001332"", ""sense"": ""positive""}, {""asserted"": ""True"", ""paths"": [], ""pr"": ""PR:000001479"", ""sense"": ""positive""}, {""asserted"": ""True"", ""paths"": [], ""pr"": ""PR:000001879"", ""sense"": ""positive""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD87"", ""tokens"": [""CD87""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001969"", ""sense"": ""positive""}], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD11"", ""CD11B"", ""CD3E"", ""CD67"", ""CD87"", ""CD8A""]}, ""note"": """", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000022 Eosinophil skos:exactMatch CL:0000771 eosinophil semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": """", ""legacy_subject_id"": ""SOULCAP:Eosinophil"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(CD14:low OR CD14:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD16:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD64:negative OR CD33:positive)"", ""column"": ""Ideal phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD19:negative"", ""column"": ""Ideal exclusion""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001332"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""(CD15:high OR CD66B:positive)"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001255"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD193:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""874205816800964db5c591f96652bdac9d28acef6907b20275b346c4e2cc3524"", ""resolution_evidence"": [{""asserted"": ""False"", ""paths"": [{""source_token"": ""CD19"", ""tokens"": [""CD19""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001002"", ""tokens"": [""CD19""], ""via"": ""pro_id""}], ""pr"": ""PR:000001002"", ""sense"": ""negative""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD3E"", ""tokens"": [""CD3E""], ""via"": ""exact_alias""}, {""source_token"": ""CD3E"", ""tokens"": [""CD3E""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001020"", ""sense"": ""negative""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD56"", ""tokens"": [""CD56""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001024"", ""tokens"": [""CD56""], ""via"": ""pro_id""}], ""pr"": ""PR:000001024"", ""sense"": ""negative""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD8A"", ""tokens"": [""CD8A""], ""via"": ""exact_alias""}, {""source_token"": ""CD8A"", ""tokens"": [""CD8A""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001084"", ""sense"": ""negative""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD11"", ""tokens"": [""CD11""], ""via"": ""exact_alias""}, {""source_token"": ""CD11B"", ""tokens"": [""CD11B""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001012"", ""sense"": ""positive""}, {""asserted"": ""True"", ""paths"": [{""source_token"": ""CD191"", ""tokens"": [""CD191""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001254"", ""sense"": ""positive""}, {""asserted"": ""True"", ""paths"": [{""source_token"": ""CD193"", ""tokens"": [""CD193""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001255"", ""tokens"": [""CD193""], ""via"": ""pro_id""}], ""pr"": ""PR:000001255"", ""sense"": ""positive""}, {""asserted"": ""True"", ""paths"": [{""source_token"": ""CD44"", ""tokens"": [""CD44""], ""via"": ""exact_alias""}, {""source_token"": ""CDW44"", ""tokens"": [""CDW44""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001307"", ""sense"": ""positive""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD66B"", ""tokens"": [""CD66B""], ""via"": ""exact_alias""}, {""source_token"": ""CD67"", ""tokens"": [""CD67""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001332"", ""tokens"": [""CD66B""], ""via"": ""pro_id""}], ""pr"": ""PR:000001332"", ""sense"": ""positive""}, {""asserted"": ""True"", ""paths"": [{""source_token"": ""CD69"", ""tokens"": [""CD69""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001343"", ""sense"": ""positive""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD87"", ""tokens"": [""CD87""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001969"", ""sense"": ""positive""}, {""asserted"": ""True"", ""paths"": [{""source_token"": ""CD9"", ""tokens"": [""CD9""], ""via"": ""exact_alias""}], ""pr"": ""PR:000005178"", ""sense"": ""positive""}], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD11"", ""CD11B"", ""CD191"", ""CD3E"", ""CD44"", ""CD67"", ""CD69"", ""CD87"", ""CD8A"", ""CD9"", ""CDW44""]}, ""note"": ""CD193 (CCR3) positive is directly asserted (not inferred) on CL:0000771, precisely matching SOULCAP's defining CD193+ requirement — one of the stronger marker-confirmed matches in this set."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000023 B cell skos:exactMatch CL:0000236 B cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:B_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD20:positive OR CD19:positive)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD20:positive"", ""column"": ""Ideal phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""a0300906ff3acd98f58b8ebb9443d973b9710447d8ab4736aa111ae172b1df78"", ""resolution_evidence"": [], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""OLS4 REST search returned zero hits for this exact query; found instead via OAK. CL:0000236 has no marker axioms recorded."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000024 Antibody Secreting Cell skos:exactMatch CL:0000946 antibody secreting cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:ASC"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD19:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD27:positive OR CD27:high)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD38:high"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD20:low OR CD20:negative)"", ""column"": ""Ideal phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""a80b760b7494b5ccacbfeb5822368766f2b27665ee08fea9e8e1f9c303a76c79"", ""resolution_evidence"": [], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""Lexical match; marker scoring found nothing useful (mouse B220-nomenclature terms scored highest instead)."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000025 Plasmablast skos:exactMatch CL:0000980 plasmablast semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:PB"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD19:positive"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001963"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""(CD27:positive OR CD27:high)"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001408"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""CD38:high"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001935"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD138:negative"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001289"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""(CD20:low OR CD20:negative)"", ""column"": ""Ideal phenotypic markers""}], ""profile_sha256"": ""9863d8716862be947cf0fcd9d032cfb66cc1eb2aa59415522dc05bae36ac21f0"", ""resolution_evidence"": [{""asserted"": ""True"", ""paths"": [{""source_token"": ""CD38"", ""tokens"": [""CD38""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001408"", ""tokens"": [""CD38""], ""via"": ""pro_id""}], ""pr"": ""PR:000001408"", ""sense"": ""high""}, {""asserted"": ""True"", ""paths"": [{""source_token"": ""CD27"", ""tokens"": [""CD27""], ""via"": ""exact_alias""}, {""source_token"": ""CD27L"", ""tokens"": [""CD27L""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001963"", ""tokens"": [""CD27""], ""via"": ""pro_id""}], ""pr"": ""PR:000001963"", ""sense"": ""high""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD3E"", ""tokens"": [""CD3E""], ""via"": ""exact_alias""}, {""source_token"": ""CD3E"", ""tokens"": [""CD3E""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001020"", ""sense"": ""negative""}, {""asserted"": ""True"", ""paths"": [{""source_token"": ""CD20"", ""tokens"": [""CD20""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001289"", ""tokens"": [""CD20""], ""via"": ""pro_id""}], ""pr"": ""PR:000001289"", ""sense"": ""negative""}, {""asserted"": ""True"", ""paths"": [{""source_token"": ""CD138"", ""tokens"": [""CD138""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001935"", ""tokens"": [""CD138""], ""via"": ""pro_id""}], ""pr"": ""PR:000001935"", ""sense"": ""negative""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD19"", ""tokens"": [""CD19""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001002"", ""tokens"": [""CD19""], ""via"": ""pro_id""}], ""pr"": ""PR:000001002"", ""sense"": ""positive""}], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD27L"", ""CD3E""]}, ""note"": ""Lexical match; marker scoring found nothing useful."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000026 Plasma Cell skos:exactMatch CL:0000786 plasma cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:PC"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD19:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD27:positive OR CD27:high)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD38:high"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001935"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD138:positive"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001289"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD20:negative"", ""column"": ""Ideal phenotypic markers""}], ""profile_sha256"": ""6e574209001a2ef071b4ee9221b9c2ac7c15348cb319df7b0eab050ed1ce33d4"", ""resolution_evidence"": [{""asserted"": ""True"", ""paths"": [{""source_token"": ""CD20"", ""tokens"": [""CD20""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001289"", ""tokens"": [""CD20""], ""via"": ""pro_id""}], ""pr"": ""PR:000001289"", ""sense"": ""negative""}, {""asserted"": ""True"", ""paths"": [{""source_token"": ""CD138"", ""tokens"": [""CD138""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001935"", ""tokens"": [""CD138""], ""via"": ""pro_id""}], ""pr"": ""PR:000001935"", ""sense"": ""positive""}], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": []}, ""note"": ""Lexical match; marker scoring found nothing useful."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000028 Transitonal B cell 1 and 2 skos:broadMatch CL:0000818 transitional stage B cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:T1/T2_B"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD27:negative"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""direct"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}, {""asserted"": ""True"", ""pr"": ""PR:000001289"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""(CD20:positive OR CD19:positive)"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001408"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""(CD38:high OR CD10:high)"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001932"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""CD24:high"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001289"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD20:positive"", ""column"": ""Ideal phenotypic markers""}], ""profile_sha256"": ""8e6bd76f1ceb75aafb12ce1c9f1f0a727efdb0db0ab1bd88934207cb56b8d23e"", ""resolution_evidence"": [{""asserted"": ""True"", ""paths"": [{""source_token"": ""CD38"", ""tokens"": [""CD38""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001408"", ""tokens"": [""CD38""], ""via"": ""pro_id""}], ""pr"": ""PR:000001408"", ""sense"": ""high""}, {""asserted"": ""True"", ""paths"": [{""source_token"": ""CD24"", ""tokens"": [""CD24""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001932"", ""tokens"": [""CD24""], ""via"": ""pro_id""}], ""pr"": ""PR:000001932"", ""sense"": ""high""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD3E"", ""tokens"": [""CD3E""], ""via"": ""exact_alias""}, {""source_token"": ""CD3E"", ""tokens"": [""CD3E""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001020"", ""sense"": ""negative""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD19"", ""tokens"": [""CD19""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001002"", ""tokens"": [""CD19""], ""via"": ""pro_id""}], ""pr"": ""PR:000001002"", ""sense"": ""positive""}, {""asserted"": ""True"", ""paths"": [{""source_token"": ""CD20"", ""tokens"": [""CD20""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001289"", ""tokens"": [""CD20""], ""via"": ""pro_id""}], ""pr"": ""PR:000001289"", ""sense"": ""positive""}], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD3E""]}, ""note"": ""SOULCAP combines T1+T2 into one gate; CL keeps CL:0000958 (T1) and CL:0000959 (T2) separate under this parent term. Sheet's Full Name has a typo ('Transitonal')."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000029 Mature B cell skos:exactMatch CL:0000785 mature B cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:Mature_B"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD27:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD38:low OR CD38:negative)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD20:positive"", ""column"": ""Ideal phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""(CD20:positive OR CD19:positive)"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""f14a51d3dd6628aedda0566ee1eb97b43ac20fa39c7dd4821b092eb3c2633498"", ""resolution_evidence"": [{""asserted"": ""False"", ""paths"": [{""source_token"": ""CD3E"", ""tokens"": [""CD3E""], ""via"": ""exact_alias""}, {""source_token"": ""CD3E"", ""tokens"": [""CD3E""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001020"", ""sense"": ""negative""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD19"", ""tokens"": [""CD19""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001002"", ""tokens"": [""CD19""], ""via"": ""pro_id""}], ""pr"": ""PR:000001002"", ""sense"": ""positive""}], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD3E""]}, ""note"": ""Lexical match; marker scoring found nothing useful."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000030 Transitional B cell 3 skos:exactMatch CL:0000960 T3 B cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:T3"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD3:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD56:negative"", ""column"": ""Required exclusion""}, {""clause"": ""CD127:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD27:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(CD38:low OR CD38:negative OR CD10:low)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""IGD:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001002"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}, {""asserted"": ""False"", ""pr"": ""PR:000001289"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""(CD20:positive OR CD19:positive)"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001932"", ""relation"": ""RO:0015015"", ""sense"": ""high""}], ""clause"": ""CD24:positive"", ""column"": ""Required phenotypic markers""}, {""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001289"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD20:positive"", ""column"": ""Ideal phenotypic markers""}], ""profile_sha256"": ""c7d5b803f4b7ec0ad269623f0df9add64154c59779b0c4589c88e925db6b299c"", ""resolution_evidence"": [{""asserted"": ""False"", ""paths"": [{""source_token"": ""CD38"", ""tokens"": [""CD38""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001408"", ""tokens"": [""CD38""], ""via"": ""pro_id""}], ""pr"": ""PR:000001408"", ""sense"": ""high""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD24"", ""tokens"": [""CD24""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001932"", ""tokens"": [""CD24""], ""via"": ""pro_id""}], ""pr"": ""PR:000001932"", ""sense"": ""high""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD3E"", ""tokens"": [""CD3E""], ""via"": ""exact_alias""}, {""source_token"": ""CD3E"", ""tokens"": [""CD3E""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001020"", ""sense"": ""negative""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD19"", ""tokens"": [""CD19""], ""via"": ""exact_alias""}, 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Same term flagged in repo issue #13 for a rename to 'iNKT cell' (filed upstream, awaiting review) — mapping is correct either way."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000074 Mucosal-associated Invariant T cell skos:exactMatch CL:0000940 mucosal-associated invariant T cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:MAIT"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [""Required phenotypic markers: mixed '|' and space in a group""], ""gaps"": [], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""e05e515df11c34b85a932345238aa1a02785a793c4c9782e99728f4221b7692f"", ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""invalid_profile"", ""untested_cl_markers"": []}, ""note"": ""Lexical match, OAK-confirmed."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000066 CD4+ alpha/beta T cell skos:exactMatch CL:0000624 CD4-positive, alpha-beta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4+_TCRab_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(TCRAB:positive OR TCRGD:negative)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:negative"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [{""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001004"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD4:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""3509d97ed33d109d83671dd2292c0945863b4eeead30a216c95cfb9c41c4a5f9"", ""resolution_evidence"": [{""asserted"": ""True"", ""paths"": [], ""pr"": ""PR:000025402"", ""sense"": ""negative""}, {""asserted"": ""True"", ""paths"": [{""source_token"": ""CD4"", ""tokens"": [""CD4""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001004"", ""tokens"": [""CD4""], ""via"": ""pro_id""}], ""pr"": ""PR:000001004"", ""sense"": ""positive""}], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": []}, ""note"": ""OAK-verified."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000067 CD8+ alpha/beta T cell skos:exactMatch CL:0000625 CD8-positive, alpha-beta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD8+_TCRab_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(TCRAB:positive OR TCRGD:negative)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [{""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001004"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD4:negative"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""5f511184f5b3fb48855d4ce1b1ed1777e79ca590353b921e6c8b66c7e79e2c17"", ""resolution_evidence"": [{""asserted"": ""True"", ""paths"": [{""source_token"": ""CD4"", ""tokens"": [""CD4""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001004"", ""tokens"": [""CD4""], ""via"": ""pro_id""}], ""pr"": ""PR:000001004"", ""sense"": ""negative""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD8A"", ""tokens"": [""CD8A""], ""via"": ""exact_alias""}, {""source_token"": ""CD8A"", ""tokens"": [""CD8A""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001084"", ""sense"": ""positive""}, {""asserted"": ""True"", ""paths"": [], ""pr"": ""PR:000025402"", ""sense"": ""positive""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD8A"", ""tokens"": [""CD8A""], ""via"": ""exact_alias""}], ""pr"": ""PR:000025403"", ""sense"": ""positive""}], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD8A""]}, ""note"": ""OAK-verified."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000073 CD4-/CD8- gamma/delta T cell skos:exactMatch CL:0000803 CD4-negative, CD8-negative gamma-delta T cell semapv:ManualMappingCuration 1:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4-/CD8-_TCRgd"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(TCRAB:negative OR TCRGD:positive)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:negative"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": ""Legacy note records OAK verification; no query artifact retained."", ""literature_evidence"": """", ""matched"": [{""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001004"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD4:negative"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""14aa1fa36c44a759182a64cb01ef6287e81a7962a7a4d9e069923f7cbb98e097"", ""resolution_evidence"": [{""asserted"": ""True"", ""paths"": [{""source_token"": ""CD4"", ""tokens"": [""CD4""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001004"", ""tokens"": [""CD4""], ""via"": ""pro_id""}], ""pr"": ""PR:000001004"", ""sense"": ""negative""}, {""asserted"": ""True"", ""paths"": [{""source_token"": ""CD8A"", ""tokens"": [""CD8A""], ""via"": ""exact_alias""}, {""source_token"": ""CD8A"", ""tokens"": [""CD8A""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001084"", ""sense"": ""negative""}], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD8A""]}, ""note"": ""OAK-verified; double-negative is the classical gamma-delta T cell phenotype."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000062 alpha/beta and gamma/delta CD4+ T cells skos:broadMatch CL:0000624 CD4-positive, alpha-beta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4+_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:negative"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001004"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD4:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""13a042caf6eaa90447c12e475dcdeb8c94ab2c34f1847f43c379e4aff9aa0435"", ""resolution_evidence"": [{""asserted"": ""True"", ""paths"": [], ""pr"": ""PR:000025402"", ""sense"": ""negative""}, {""asserted"": ""True"", ""paths"": [{""source_token"": ""CD4"", ""tokens"": [""CD4""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001004"", ""tokens"": [""CD4""], ""via"": ""pro_id""}], ""pr"": ""PR:000001004"", ""sense"": ""positive""}], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": []}, ""note"": ""CL has no combined alpha-beta+gamma-delta CD4+ term; alpha-beta dominates the CD4+ compartment."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000063 alpha/beta and gamma/delta CD8+ T cells skos:broadMatch CL:0000625 CD8-positive, alpha-beta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD8+_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""direct"", ""axioms"": [{""asserted"": ""True"", ""pr"": ""PR:000001004"", ""relation"": ""CL:4030046"", ""sense"": ""negative""}], ""clause"": ""CD4:negative"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""ee71924d4eb86799cfb40fcc026874f16ac52b1df80dfa5bc25d00c7ef1bf019"", ""resolution_evidence"": [{""asserted"": ""True"", ""paths"": [{""source_token"": ""CD4"", ""tokens"": [""CD4""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001004"", ""tokens"": [""CD4""], ""via"": ""pro_id""}], ""pr"": ""PR:000001004"", ""sense"": ""negative""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD8A"", ""tokens"": [""CD8A""], ""via"": ""exact_alias""}, {""source_token"": ""CD8A"", ""tokens"": [""CD8A""], ""via"": ""exact_alias""}], ""pr"": ""PR:000001084"", ""sense"": ""positive""}, {""asserted"": ""True"", ""paths"": [], ""pr"": ""PR:000025402"", ""sense"": ""positive""}, {""asserted"": ""False"", ""paths"": [{""source_token"": ""CD8A"", ""tokens"": [""CD8A""], ""via"": ""exact_alias""}], ""pr"": ""PR:000025403"", ""sense"": ""positive""}], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": [""CD8A""]}, ""note"": ""Same reasoning as CD4+ T cell."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000064 alpha/beta and gamma/delta CD4+ and CD8+ T cells skos:broadMatch CL:0000789 alpha-beta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4+/CD8+_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD4:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""1a94242804d7d285d6e99a84f940c5920cba588e703bc9807bd7066e7a931273"", ""resolution_evidence"": [], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""No CD4+CD8+ double-positive CL term found at all; peripheral DP T cells are themselves biologically unusual."", ""status"": ""proposal"", ""uncertain"": true}" soulcap-sssom +SOULCAP:SC000065 alpha/beta and gamma/delta CD4- and CD8- T cells skos:broadMatch CL:0000084 T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4-/CD8-_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD4:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:negative"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""81d30ff7dab4278ec39ef4008e2e6cb051865ff423a24182495de6f6150eff6e"", ""resolution_evidence"": [], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""No peripheral (non-thymic) double-negative term spanning both TCR types; only a thymocyte-stage term exists (wrong tissue)."", ""status"": ""proposal"", ""uncertain"": true}" soulcap-sssom +SOULCAP:SC000068 CD4+ and CD8+ alpha/beta T cell skos:broadMatch CL:0000789 alpha-beta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4+/CD8+_TCRab_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(TCRAB:positive OR TCRGD:negative)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD4:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""03c69fac8ec012810b035a54f82237833b6f4299be38ce9139c761ca28f65d09"", ""resolution_evidence"": [], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""No CD4+CD8+ double-positive alpha-beta term found."", ""status"": ""proposal"", ""uncertain"": true}" soulcap-sssom +SOULCAP:SC000069 CD4- and CD8- alpha/beta T cell skos:broadMatch CL:0000789 alpha-beta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4-/CD8-_TCRab_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(TCRAB:positive OR TCRGD:negative)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD4:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:negative"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""147cd19bfa49697c170198087716cdfac8d82d0db6688150b183bb8e9c0340e5"", ""resolution_evidence"": [], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""Only CL:0002489 'double negative thymocyte' found — wrong tissue/maturity stage for a blood/PBMC panel."", ""status"": ""proposal"", ""uncertain"": true}" soulcap-sssom +SOULCAP:SC000070 CD4+ gamma/delta T cell skos:broadMatch CL:0000798 gamma-delta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD4+_TCRgd_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(TCRAB:negative OR TCRGD:positive)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD4:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:negative"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""737860c20417038a9c5b8c687ec9c6acfc02afd4216730694025bb805010eae3"", ""resolution_evidence"": [], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""CD4+ gamma-delta T cells are atypical/rare; no CL term found."", ""status"": ""proposal"", ""uncertain"": true}" soulcap-sssom +SOULCAP:SC000071 CD8+ gamma/delta T cell skos:broadMatch CL:0000798 gamma-delta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD8+_TCRgd_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(TCRAB:negative OR TCRGD:positive)"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD4:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [], ""profile_sha256"": ""4bdfff88d621b6e25864f108e587296403ce0eb3f750a245df9360950cf11c2a"", ""resolution_evidence"": [], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""no_marker_support"", ""untested_cl_markers"": []}, ""note"": ""No CD8+-specific gamma-delta CL term found."", ""status"": ""proposal"", ""uncertain"": true}" soulcap-sssom +SOULCAP:SC000072 CD4+/CD8+ gamma/delta T cell skos:broadMatch CL:0000798 gamma-delta T cell semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": 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{""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], 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CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000047 CD56+ CD4 T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD56+_CD4_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD4:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD56:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""84b80ceffc55fff7fe754debacc9f78cc653222b608785feba0f66708b01dde4"", ""resolution_evidence"": [{""asserted"": ""False"", ""paths"": [{""source_token"": ""CD56"", ""tokens"": [""CD56""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001024"", ""tokens"": [""CD56""], ""via"": ""pro_id""}], ""pr"": ""PR:000001024"", ""sense"": ""positive""}, {""asserted"": ""False"", ""paths"": [], ""pr"": ""PR:000001874"", ""sense"": ""positive""}, {""asserted"": ""True"", ""paths"": [], ""pr"": ""PR:P13591"", ""sense"": ""positive""}], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": []}, ""note"": ""Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000048 CD56+ CD8 T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD56+_CD8_T_cell"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD4:negative"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD8:positive"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD56:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""34a6e8b963f5282eb1065224d59a75e84c202dad24e1ddc0dd17b8d0ab024a83"", ""resolution_evidence"": [{""asserted"": ""False"", ""paths"": [{""source_token"": ""CD56"", ""tokens"": [""CD56""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001024"", ""tokens"": [""CD56""], ""via"": ""pro_id""}], ""pr"": ""PR:000001024"", ""sense"": ""positive""}, {""asserted"": ""False"", ""paths"": [], ""pr"": ""PR:000001874"", ""sense"": ""positive""}, {""asserted"": ""True"", ""paths"": [], ""pr"": ""PR:P13591"", ""sense"": ""positive""}], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": []}, ""note"": ""Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom +SOULCAP:SC000049 CD56+ alpha/beta T cell skos:broadMatch CL:4052055 mature NK T cell, human semapv:ManualMappingCuration n:1 "{""evidence_source"": ""reports/candidate_cl_mappings_narrative.md"", ""legacy_evidence_override"": ""no_marker_axiom"", ""legacy_subject_id"": ""SOULCAP:CD56+_TCRab"", ""marker_evidence"": {""contradictions"": [], ""curator_evidence"": """", ""errors"": [], ""gaps"": [{""clause"": ""(CD14:negative OR CD33:negative OR CD64:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""(CD19:negative OR CD20:negative)"", ""column"": ""Required exclusion""}, {""clause"": ""CD123:negative"", ""column"": ""Required exclusion""}, {""clause"": ""(HLA-DR:not:positive OR CD11C:not:high)"", ""column"": ""Ideal exclusion""}, {""clause"": ""(CD15:negative OR CD66B:negative)"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD16:negative"", ""column"": ""Ideal exclusion""}, {""clause"": ""CD45:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""CD3:positive"", ""column"": ""Required phenotypic markers""}, {""clause"": ""(TCRAB:positive OR TCRGD:negative)"", ""column"": ""Required phenotypic markers""}], ""ideal_conflicts"": [], ""lexical_evidence"": """", ""literature_evidence"": """", ""matched"": [{""assertion"": ""inferred"", ""axioms"": [{""asserted"": ""False"", ""pr"": ""PR:000001024"", ""relation"": ""RO:0002104"", ""sense"": ""positive""}], ""clause"": ""CD56:positive"", ""column"": ""Required phenotypic markers""}], ""profile_sha256"": ""bdfd521f1aa55093bb7d384b33300ba798a6fdef632c1388605366eb409de274"", ""resolution_evidence"": [{""asserted"": ""False"", ""paths"": [{""source_token"": ""CD56"", ""tokens"": [""CD56""], ""via"": ""exact_alias""}, {""pr"": ""PR:000001024"", ""tokens"": [""CD56""], ""via"": ""pro_id""}], ""pr"": ""PR:000001024"", ""sense"": ""positive""}, {""asserted"": ""False"", ""paths"": [], ""pr"": ""PR:000001874"", ""sense"": ""positive""}, {""asserted"": ""True"", ""paths"": [], ""pr"": ""PR:P13591"", ""sense"": ""positive""}], ""resolution_mode"": ""explicit_marker_policy"", ""review_status"": ""needs_review"", ""sheet_cl_id"": """", ""sheet_confirmation"": ""not_recorded"", ""sheet_notes"": """", ""status"": ""partial_support"", ""untested_cl_markers"": []}, ""note"": ""Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). 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No CD8+-specific counterpart with this 'terminally differentiated' qualifier was found — see gaps.tsv."", ""status"": ""proposal"", ""uncertain"": false}" soulcap-sssom diff --git a/reports/resolver-refinement/enhanced/matcher_evaluation.json b/reports/resolver-refinement/enhanced/matcher_evaluation.json new file mode 100644 index 0000000..f569407 --- /dev/null +++ b/reports/resolver-refinement/enhanced/matcher_evaluation.json @@ -0,0 +1,93319 @@ +{ + "schema_version": 1, + "generated_utc": "2026-09-11T04:13:42.598982+00:00", + "inputs": { + "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44", + "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8", + "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e", + "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c", + "benchmark": 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+ "marker_resolution.py": "17feb8779da5a3d429c9d8326d26195cb66bb25cebf9cd005c79410d99efe050" + } + }, + "config": { + "ks": [ + 1, + 3, + 5 + ], + "ranking": "production order, including disqualified candidates", + "ties": "primary metrics use production order; bounds report tie sensitivity", + "denominator": "all cohort cases, including unscorable profiles and absent targets", + "marker_resolution": true, + "resolution_policy": "explicit_v1", + "local_lexical": false, + "lexical_limit": 20, + "lexical_min_jaccard": 0.5 + }, + "candidate_count": 826, + "marker_resolution_issues": [ + { + "marker": "CD15", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD16", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD1D-A-GALCER", + "reason": "policy_withheld", + "representation": "reagent_gate", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein." + }, + { + "marker": "CD3", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, + { + "marker": "CD57", + "reason": "policy_withheld", + "representation": "reagent_gate", + "rationale": "Registry notes describe a reagent, lipid antigen, or carbohydrate epitope rather than a single protein." + }, + { + "marker": "CD8", + "reason": "policy_withheld", + "representation": "unresolved", + "rationale": "Conservative hold: registry protein label or reagent context does not explicitly establish whole-marker identity; review required." + }, 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"provisional/SOULCAP:SC000058/Broad", + "change": "regressed", + "before_rank": 54, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000059/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000060/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000061/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000062/Broad", + "change": "regressed", + "before_rank": 9, + "after_rank": 70, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000063/Broad", + "change": "regressed", + "before_rank": 4, + "after_rank": 125, + "before_status": "hit_at_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000064/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000065/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000066/Exact", + "change": "regressed", + "before_rank": 9, + "after_rank": 69, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000067/Exact", + "change": "regressed", + "before_rank": 4, + "after_rank": 124, + "before_status": "hit_at_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000068/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000069/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000070/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000071/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000072/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000073/Exact", + "change": "regressed", + "before_rank": 1, + "after_rank": 117, + "before_status": "hit_at_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000074/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000082/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000085/Exact", + "change": "regressed", + "before_rank": 239, + "after_rank": 247, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000087/Exact", + "change": "improved", + "before_rank": 252, + "after_rank": 249, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000089/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000092/Exact", + "change": "improved", + "before_rank": 253, + "after_rank": 250, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000096/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000099/Exact", + "change": "regressed", + "before_rank": 239, + "after_rank": 247, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000103/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + } + ] + } +} diff --git a/reports/resolver-refinement/enhanced/matcher_evaluation.md b/reports/resolver-refinement/enhanced/matcher_evaluation.md new file mode 100644 index 0000000..0d334b3 --- /dev/null +++ b/reports/resolver-refinement/enhanced/matcher_evaluation.md @@ -0,0 +1,852 @@ +# Matcher evaluation + +Target retrieval only; provisional agreement is not validated accuracy. +All cohort cases remain in denominators, including invalid profiles and absent targets. +Primary ranks retain production tie ordering and disqualified candidates. Bounds show tie sensitivity. + +## Metrics + +```json +{ + "reviewed": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional": { + "cases": 80, + "mrr": 0.10812960188222673, + "statuses": { + "below_top_5": 45, + "hit_at_5": 16, + "invalid_profile": 6, + "target_not_in_index": 13 + }, + "cases_with_missing_targets": 15, + "top1_disqualified": 0, + "hit_at_1": 0.0375, + "hit_at_1_optimistic": 0.075, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.1375, + "hit_at_3_optimistic": 0.15, + "hit_at_3_pessimistic": 0.05, + "hit_at_5": 0.2, + "hit_at_5_optimistic": 0.2, + "hit_at_5_pessimistic": 0.0875 + } +} +``` + +## Relation breakdown + +```json +{ + "reviewed/Exact": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Broad": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Exact": { + "cases": 50, + "mrr": 0.11785498910845602, + "statuses": { + "below_top_5": 28, + "hit_at_5": 10, + "invalid_profile": 6, + "target_not_in_index": 6 + }, + "cases_with_missing_targets": 8, + "top1_disqualified": 0, + "hit_at_1": 0.04, + "hit_at_1_optimistic": 0.1, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.14, + "hit_at_3_optimistic": 0.16, + "hit_at_3_pessimistic": 0.06, + "hit_at_5": 0.2, + "hit_at_5_optimistic": 0.2, + "hit_at_5_pessimistic": 0.08 + }, + "provisional/Broad": { + "cases": 30, + "mrr": 0.09192062317184475, + "statuses": { + "hit_at_5": 6, + "below_top_5": 17, + "target_not_in_index": 7 + }, + "cases_with_missing_targets": 7, + "top1_disqualified": 0, + "hit_at_1": 0.03333333333333333, + "hit_at_1_optimistic": 0.03333333333333333, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.13333333333333333, + "hit_at_3_optimistic": 0.13333333333333333, + "hit_at_3_pessimistic": 0.03333333333333333, + "hit_at_5": 0.2, + "hit_at_5_optimistic": 0.2, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + } +} +``` + +## Baseline comparison + +Input/config changes make comparisons non-equivalent. + +```json +{ + "comparable": false, + "differences": [ + "inputs", + "config" + ], + "matcher_changed": false, + "changes": [ + { + "case_id": "provisional/SOULCAP:SC000001/Exact", + "change": "unchanged", + "before_rank": 6, + "after_rank": 6, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000002/Exact", + "change": "unchanged", + "before_rank": 1, + "after_rank": 1, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000003/Exact", + "change": "regressed", + "before_rank": 1, + "after_rank": 3, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000004/Broad", + "change": "regressed", + "before_rank": 1, + "after_rank": 3, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000005/Broad", + "change": "regressed", + "before_rank": 1, + "after_rank": 3, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000006/Broad", + "change": "unchanged", + "before_rank": 3, + "after_rank": 3, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000007/Exact", + "change": "regressed", + "before_rank": 155, + "after_rank": 162, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000008/Exact", + "change": "regressed", + "before_rank": 161, + "after_rank": 171, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000009/Exact", + "change": "improved", + "before_rank": 26, + "after_rank": 25, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000010/Exact", + "change": "unchanged", + "before_rank": 118, + "after_rank": 118, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000011/Exact", + "change": "regressed", + "before_rank": 18, + "after_rank": 20, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000012/Exact", + "change": "unchanged", + "before_rank": 2, + "after_rank": 2, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000013/Exact", + "change": "unchanged", + "before_rank": 2, + "after_rank": 2, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000014/Exact", + "change": "regressed", + "before_rank": 34, + "after_rank": 36, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000015/Exact", + "change": "improved", + "before_rank": 3, + "after_rank": 2, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000016/Exact", + "change": "unchanged", + "before_rank": 1, + "after_rank": 1, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000017/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000018/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000019/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000020/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000021/Exact", + "change": "regressed", + "before_rank": 9, + "after_rank": 10, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000022/Exact", + "change": "unchanged", + "before_rank": 4, + "after_rank": 4, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000023/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000024/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000025/Exact", + "change": "unchanged", + "before_rank": 3, + "after_rank": 3, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000026/Exact", + "change": "improved", + "before_rank": 31, + "after_rank": 6, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000028/Broad", + "change": "unchanged", + "before_rank": 1, + "after_rank": 1, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000029/Exact", + "change": "regressed", + "before_rank": 43, + "after_rank": 48, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000030/Exact", + "change": "unchanged", + "before_rank": 20, + "after_rank": 20, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000031/Exact", + "change": "unchanged", + "before_rank": 5, + "after_rank": 5, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000032/Exact", + "change": "unchanged", + "before_rank": 5, + "after_rank": 5, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000033/Broad", + "change": "unchanged", + "before_rank": 12, + "after_rank": 12, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000034/Broad", + "change": "unchanged", + "before_rank": 4, + "after_rank": 4, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000035/Broad", + "change": "unchanged", + "before_rank": 5, + "after_rank": 5, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000036/Broad", + "change": "unchanged", + "before_rank": 12, + "after_rank": 12, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000037/Exact", + "change": "unchanged", + "before_rank": 39, + "after_rank": 39, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000039/Exact", + "change": "unchanged", + "before_rank": 13, + "after_rank": 13, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000040/Exact", + "change": "unchanged", + "before_rank": 33, + "after_rank": 33, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000041/Exact", + "change": "unchanged", + "before_rank": 14, + "after_rank": 14, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000042/Exact", + "change": "unchanged", + "before_rank": 18, + "after_rank": 18, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000043/Exact", + "change": "unchanged", + "before_rank": 18, + "after_rank": 18, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000044/Exact", + "change": "unchanged", + "before_rank": 17, + "after_rank": 17, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000045/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000046/Broad", + "change": "regressed", + "before_rank": 34, + "after_rank": 87, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000047/Broad", + "change": "regressed", + "before_rank": 42, + "after_rank": 127, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000048/Broad", + "change": "regressed", + "before_rank": 63, + "after_rank": 119, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000049/Broad", + "change": "regressed", + "before_rank": 34, + "after_rank": 87, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000050/Broad", + "change": "regressed", + "before_rank": 70, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000051/Broad", + "change": "regressed", + "before_rank": 63, + "after_rank": 114, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000052/Broad", + "change": "regressed", + "before_rank": 42, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000053/Broad", + "change": "regressed", + "before_rank": 54, + "after_rank": 115, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000054/Broad", + "change": "regressed", + "before_rank": 34, + "after_rank": 87, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000055/Broad", + "change": "regressed", + "before_rank": 70, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000056/Broad", + "change": "regressed", + "before_rank": 63, + "after_rank": 114, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000057/Broad", + "change": "regressed", + "before_rank": 42, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000058/Broad", + "change": "regressed", + "before_rank": 54, + "after_rank": 120, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000059/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000060/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000061/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000062/Broad", + "change": "regressed", + "before_rank": 9, + "after_rank": 70, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000063/Broad", + "change": "regressed", + "before_rank": 4, + "after_rank": 125, + "before_status": "hit_at_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000064/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000065/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000066/Exact", + "change": "regressed", + "before_rank": 9, + "after_rank": 69, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000067/Exact", + "change": "regressed", + "before_rank": 4, + "after_rank": 124, + "before_status": "hit_at_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000068/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000069/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000070/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000071/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000072/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + }, + { + "case_id": "provisional/SOULCAP:SC000073/Exact", + "change": "regressed", + "before_rank": 1, + "after_rank": 117, + "before_status": "hit_at_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000074/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000082/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000085/Exact", + "change": "regressed", + "before_rank": 239, + "after_rank": 247, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000087/Exact", + "change": "improved", + "before_rank": 252, + "after_rank": 249, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000089/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000092/Exact", + "change": "improved", + "before_rank": 253, + "after_rank": 250, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000096/Exact", + "change": "regressed", + "before_rank": 238, + "after_rank": 246, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000099/Exact", + "change": "regressed", + "before_rank": 239, + "after_rank": 247, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000103/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_in_index" + } + ] +} +``` + +See matcher_evaluation.tsv for per-case failures and matcher_evaluation.json for full evidence and provenance. diff --git a/reports/resolver-refinement/enhanced/matcher_evaluation.tsv b/reports/resolver-refinement/enhanced/matcher_evaluation.tsv new file mode 100644 index 0000000..372df40 --- /dev/null +++ b/reports/resolver-refinement/enhanced/matcher_evaluation.tsv @@ -0,0 +1,81 @@ +case_id cohort subject_id match_type targets status rank rank_best rank_worst missing_targets note candidates target_results +provisional/SOULCAP:SC000001/Exact provisional SOULCAP:SC000001 Exact "[""CL:0000623""]" below_top_5 6 6 32 [] "[{""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD3-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD34"", ""tokens"": [""CD34""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001003"", ""tokens"": [""CD34""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001381"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD122"", ""tokens"": [""CD122""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000001874"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000002065"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD117"", ""tokens"": [""CD117""]}, {""via"": ""pro_id"", ""pr"": ""PR:000002065"", ""tokens"": [""CD117""]}]}]}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19-"", ""CD56+ (hi) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD3-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001319"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD84"", ""tokens"": [""CD84""]}]}]}, {""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD3-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""low"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000002015"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""positive"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": []}]}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19-"", ""CD56+ (hi) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD3-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""high"", ""pr"": ""PR:000001024"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD56"", ""tokens"": [""CD56""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001024"", ""tokens"": [""CD56""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001020"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}, {""via"": ""exact_alias"", ""source_token"": ""CD3E"", ""tokens"": [""CD3E""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001289"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD20"", ""tokens"": [""CD20""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001289"", ""tokens"": [""CD20""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001483"", ""asserted"": ""True"", ""paths"": []}, {""sense"": ""negative"", ""pr"": ""PR:000001889"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD14"", ""tokens"": [""CD14""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001889"", ""tokens"": [""CD14""]}]}, {""sense"": ""positive"", ""pr"": ""PR:000009766"", ""asserted"": ""True"", ""paths"": []}]}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 13, ""matched"": [""CD34-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD3-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom 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provisional SOULCAP:SC000005 Broad "[""CL:0000939""]" hit_at_5 3 2 4 [] "[{""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD3-"", ""CD45+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [{""sense"": ""negative"", ""pr"": ""PR:000001002"", ""asserted"": ""False"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": ""CD19"", ""tokens"": [""CD19""]}, {""via"": ""pro_id"", ""pr"": ""PR:000001002"", ""tokens"": [""CD19""]}]}, {""sense"": ""negative"", ""pr"": ""PR:000001003"", ""asserted"": ""True"", ""paths"": [{""via"": ""exact_alias"", ""source_token"": 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"HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 2, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [], + "rank": 253, + "rank_best": 242, + "rank_worst": 258 + } + ], + "status": "below_top_5", + "note": "" + }, + { + "case_id": "provisional/SOULCAP:SC000096/Exact", + "cohort": "provisional", + "subject_id": "SOULCAP:SC000096", + "match_type": "Exact", + "targets": [ + "CL:0000905" + ], + "evidence_reference": "mappings/curated_mappings.tsv", + "uncertain": false, + "rank": 238, + "rank_best": 238, + "rank_worst": 247, + "missing_targets": [], + "candidates": [ + { + "cl_id": "CL:0001057", + "label": "myeloid dendritic cell, human", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0002000", + "label": "Kit-positive erythroid progenitor cell", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0001024", + "label": "CD34-positive, CD38-negative hematopoietic stem cell", + "score": 12, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 2, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0000938", + "label": "CD16-negative, CD56-bright natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0002343", + "label": "decidual natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + } + ], + "target_results": [ + { + "cl_id": "CL:0000905", + "label": "effector memory CD4-positive, alpha-beta T cell", + "score": 3, + "matched": [], + "gaps": [ + "CD14-/CD33-/CD64- (no axiom on any alt.)", + "CD19-/CD20- (no axiom on any alt.)", + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 3, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [], + "rank": 238, + "rank_best": 238, + "rank_worst": 247 + } + ], + "status": "below_top_5", + "note": "" + }, + { + "case_id": "provisional/SOULCAP:SC000099/Exact", + "cohort": "provisional", + "subject_id": "SOULCAP:SC000099", + "match_type": "Exact", + "targets": [ + "CL:0000913" + ], + "evidence_reference": "mappings/curated_mappings.tsv", + "uncertain": false, + "rank": 239, + "rank_best": 238, + "rank_worst": 247, + "missing_targets": [], + "candidates": [ + { + "cl_id": "CL:0001057", + "label": "myeloid dendritic cell, human", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0002000", + "label": "Kit-positive erythroid progenitor cell", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0001024", + "label": "CD34-positive, CD38-negative hematopoietic stem cell", + "score": 12, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 2, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0000938", + "label": "CD16-negative, CD56-bright natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0002343", + "label": "decidual natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + } + ], + "target_results": [ + { + "cl_id": "CL:0000913", + "label": "effector memory CD8-positive, alpha-beta T cell", + "score": 3, + "matched": [], + "gaps": [ + "CD14-/CD33-/CD64- (no axiom on any alt.)", + "CD19-/CD20- (no axiom on any alt.)", + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 3, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [], + "rank": 239, + "rank_best": 238, + "rank_worst": 247 + } + ], + "status": "below_top_5", + "note": "" + }, + { + "case_id": "provisional/SOULCAP:SC000103/Exact", + "cohort": "provisional", + "subject_id": "SOULCAP:SC000103", + "match_type": "Exact", + "targets": [ + "CL:4030002" + ], + "evidence_reference": "mappings/curated_mappings.tsv", + "uncertain": false, + "rank": null, + "rank_best": null, + "rank_worst": null, + "missing_targets": [ + "CL:4030002" + ], + "candidates": [ + { + "cl_id": "CL:0001057", + "label": "myeloid dendritic cell, human", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0002000", + "label": "Kit-positive erythroid progenitor cell", + "score": 13, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD123-" + ], + "gaps": [ + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)", + "CD16-" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0000938", + "label": "CD16-negative, CD56-bright natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0001024", + "label": "CD34-positive, CD38-negative hematopoietic stem cell", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + }, + { + "cl_id": "CL:0002343", + "label": "decidual natural killer cell, human", + "score": 11, + "matched": [ + "CD14- (1 of 3 alt.)", + "CD19- (1 of 2 alt.)", + "CD16-" + ], + "gaps": [ + "CD123-", + "HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)", + "CD15-/CD66B- (no axiom on any alt.)" + ], + "contradictions": [], + "hint_bonus": 1, + "disqualified": false, + "candidate_sources": [ + "marker_axioms" + ], + "lexical_evidence": null, + "resolution_evidence": [] + } + ], + "target_results": [], + "status": "target_not_in_index", + "note": "" + } + ], + "metrics": { + "reviewed": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional": { + "cases": 80, + "mrr": 0.1524095320342756, + "statuses": { + "below_top_5": 42, + "hit_at_5": 19, + "invalid_profile": 6, + "target_not_in_index": 13 + }, + "cases_with_missing_targets": 15, + "top1_disqualified": 0, + "hit_at_1": 0.0875, + "hit_at_1_optimistic": 0.125, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.15, + "hit_at_3_optimistic": 0.2, + "hit_at_3_pessimistic": 0.0875, + "hit_at_5": 0.2375, + "hit_at_5_optimistic": 0.275, + "hit_at_5_pessimistic": 0.1 + } + }, + "by_relation": { + "reviewed/Exact": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Broad": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Exact": { + "cases": 50, + "mrr": 0.15217520145714408, + "statuses": { + "below_top_5": 26, + "hit_at_5": 12, + "invalid_profile": 6, + "target_not_in_index": 6 + }, + "cases_with_missing_targets": 8, + "top1_disqualified": 0, + "hit_at_1": 0.08, + "hit_at_1_optimistic": 0.14, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.16, + "hit_at_3_optimistic": 0.18, + "hit_at_3_pessimistic": 0.08, + "hit_at_5": 0.24, + "hit_at_5_optimistic": 0.24, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Broad": { + "cases": 30, + "mrr": 0.1528000829961614, + "statuses": { + "hit_at_5": 7, + "below_top_5": 16, + "target_not_in_index": 7 + }, + "cases_with_missing_targets": 7, + "top1_disqualified": 0, + "hit_at_1": 0.1, + "hit_at_1_optimistic": 0.1, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.13333333333333333, + "hit_at_3_optimistic": 0.23333333333333334, + "hit_at_3_pessimistic": 0.1, + "hit_at_5": 0.23333333333333334, + "hit_at_5_optimistic": 0.3333333333333333, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + } + } +} diff --git a/reports/resolver-refinement/legacy/matcher_evaluation.md b/reports/resolver-refinement/legacy/matcher_evaluation.md new file mode 100644 index 0000000..5ed8fdf --- /dev/null +++ b/reports/resolver-refinement/legacy/matcher_evaluation.md @@ -0,0 +1,195 @@ +# Matcher evaluation + +Target retrieval only; provisional agreement is not validated accuracy. +All cohort cases remain in denominators, including invalid profiles and absent targets. +Primary ranks retain production tie ordering and disqualified candidates. Bounds show tie sensitivity. + +## Metrics + +```json +{ + "reviewed": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional": { + "cases": 80, + "mrr": 0.1524095320342756, + "statuses": { + "below_top_5": 42, + "hit_at_5": 19, + "invalid_profile": 6, + "target_not_in_index": 13 + }, + "cases_with_missing_targets": 15, + "top1_disqualified": 0, + "hit_at_1": 0.0875, + "hit_at_1_optimistic": 0.125, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.15, + "hit_at_3_optimistic": 0.2, + "hit_at_3_pessimistic": 0.0875, + "hit_at_5": 0.2375, + "hit_at_5_optimistic": 0.275, + "hit_at_5_pessimistic": 0.1 + } +} +``` + +## Relation breakdown + +```json +{ + "reviewed/Exact": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Broad": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "reviewed/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Exact": { + "cases": 50, + "mrr": 0.15217520145714408, + "statuses": { + "below_top_5": 26, + "hit_at_5": 12, + "invalid_profile": 6, + "target_not_in_index": 6 + }, + "cases_with_missing_targets": 8, + "top1_disqualified": 0, + "hit_at_1": 0.08, + "hit_at_1_optimistic": 0.14, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.16, + "hit_at_3_optimistic": 0.18, + "hit_at_3_pessimistic": 0.08, + "hit_at_5": 0.24, + "hit_at_5_optimistic": 0.24, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Broad": { + "cases": 30, + "mrr": 0.1528000829961614, + "statuses": { + "hit_at_5": 7, + "below_top_5": 16, + "target_not_in_index": 7 + }, + "cases_with_missing_targets": 7, + "top1_disqualified": 0, + "hit_at_1": 0.1, + "hit_at_1_optimistic": 0.1, + "hit_at_1_pessimistic": 0.0, + "hit_at_3": 0.13333333333333333, + "hit_at_3_optimistic": 0.23333333333333334, + "hit_at_3_pessimistic": 0.1, + "hit_at_5": 0.23333333333333334, + "hit_at_5_optimistic": 0.3333333333333333, + "hit_at_5_pessimistic": 0.1 + }, + "provisional/Narrow": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + }, + "provisional/Related": { + "cases": 0, + "mrr": null, + "statuses": {}, + "cases_with_missing_targets": 0, + "top1_disqualified": 0, + "hit_at_1": null, + "hit_at_1_optimistic": null, + "hit_at_1_pessimistic": null, + "hit_at_3": null, + "hit_at_3_optimistic": null, + "hit_at_3_pessimistic": null, + "hit_at_5": null, + "hit_at_5_optimistic": null, + "hit_at_5_pessimistic": null + } +} +``` + +See matcher_evaluation.tsv for per-case failures and matcher_evaluation.json for full evidence and provenance. diff --git a/reports/resolver-refinement/legacy/matcher_evaluation.tsv b/reports/resolver-refinement/legacy/matcher_evaluation.tsv new file mode 100644 index 0000000..e878348 --- /dev/null +++ b/reports/resolver-refinement/legacy/matcher_evaluation.tsv @@ -0,0 +1,81 @@ +case_id cohort subject_id match_type targets status rank rank_best rank_worst missing_targets note candidates target_results +provisional/SOULCAP:SC000001/Exact provisional SOULCAP:SC000001 Exact "[""CL:0000623""]" below_top_5 6 6 32 [] "[{""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (hi) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (hi) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+/CD56:high (no axiom on any alt.)"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-"", ""CD33-/CD64- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 6, ""rank_best"": 6, ""rank_worst"": 32}]" +provisional/SOULCAP:SC000002/Exact provisional SOULCAP:SC000002 Exact "[""CL:0000938""]" hit_at_5 1 1 2 [] "[{""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56:high (hi)"", ""CD16- (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56:high (hi)"", ""CD16- (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 19, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD56:high"", ""CD127-"", ""CD16-/CD16:low (no axiom on any alt.)"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56:high"", ""CD127-"", ""CD16-/CD16:low (no axiom on any alt.)"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000823"", ""label"": ""immature natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56:high"", ""CD127-"", ""CD16-/CD16:low (no axiom on any alt.)"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56:high (hi)"", ""CD16- (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000003/Exact provisional SOULCAP:SC000003 Exact "[""CL:0000939""]" hit_at_5 1 1 2 [] "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD45+"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+ (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+/CD56:high (no axiom on any alt.)"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000823"", ""label"": ""immature natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+/CD56:high (no axiom on any alt.)"", ""CD127-"", ""CD16+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim) (1 of 2 alt.)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000004/Broad provisional SOULCAP:SC000004 Broad "[""CL:0000939""]" hit_at_5 1 1 2 [] "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD45+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002346"", ""label"": ""Dx5-negative, NK1.1-positive immature natural killer cell, mouse"", ""score"": 16, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002438"", ""label"": ""NK1.1-positive natural killer cell, mouse"", ""score"": 16, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000005/Broad provisional SOULCAP:SC000005 Broad "[""CL:0000939""]" hit_at_5 1 1 2 [] "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD45+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 17, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD45+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000623"", ""label"": ""natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000823"", ""label"": ""immature natural killer cell"", ""score"": 15, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD56+"", ""CD127-"", ""CD16+"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000939"", ""label"": ""CD16-positive, CD56-dim natural killer cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD56+ (dim)"", ""CD16+""], ""gaps"": [""CD34-"", ""CD45+"", ""CD127-"", ""CD57+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000006/Broad provisional SOULCAP:SC000006 Broad "[""CL:0001074""]" hit_at_5 3 3 3 [] "[{""cl_id"": ""CL:0001073"", ""label"": ""CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human"", ""score"": 15, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001076"", ""label"": ""NKp46-positive innate lymphoid cell, human"", ""score"": 15, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001074"", ""label"": ""CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human"", ""score"": 14, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002338"", ""label"": ""CD56-positive, CD161-positive immature natural killer cell, human"", ""score"": 13, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001072"", ""label"": ""CD34-negative, CD117-positive innate lymphoid cell, human"", ""score"": 11, ""matched"": [""CD3-"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD56+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001074"", ""label"": ""CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human"", ""score"": 14, ""matched"": [""CD3-"", ""CD56+"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 3, ""rank_best"": 3, ""rank_worst"": 3}]" +provisional/SOULCAP:SC000007/Exact provisional SOULCAP:SC000007 Exact "[""CL:0001065""]" below_top_5 155 155 159 [] "[{""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 23, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 23, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 23, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 23, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD123-""], ""gaps"": [""CD45+"", ""CD127+"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002089"", ""label"": ""group 2 innate lymphoid cell, mouse"", ""score"": 23, ""matched"": [""CD33- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD127+""], ""gaps"": [""CD34-"", ""CD45+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001065"", ""label"": ""innate lymphoid cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD19-"", ""CD3-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD127+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 155, ""rank_best"": 155, ""rank_worst"": 159}]" +provisional/SOULCAP:SC000008/Exact provisional SOULCAP:SC000008 Exact "[""CL:0001067""]" below_top_5 161 150 165 [] "[{""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117-"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117-"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117-"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 27, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD56-"", ""CD123-""], ""gaps"": [""CD45+"", ""CD127+"", ""CD117-"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002089"", ""label"": ""group 2 innate lymphoid cell, mouse"", ""score"": 27, ""matched"": [""CD33- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD127+"", ""CD56-""], ""gaps"": [""CD34-"", ""CD45+"", ""CD117-"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001067"", ""label"": ""group 1 innate lymphoid cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD19-"", ""CD3-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD127+"", ""CD56-"", ""CD117-"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 161, ""rank_best"": 150, ""rank_worst"": 165}]" +provisional/SOULCAP:SC000009/Exact provisional SOULCAP:SC000009 Exact "[""CL:0001081""]" below_top_5 26 25 32 [] "[{""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 29, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD117:low (dim) (1 of 2 alt.)""], ""gaps"": [""CD34-"", ""CD127+"", ""CD294+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56-"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 27, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD56-"", ""CD123-""], ""gaps"": [""CD45+"", ""CD127+"", ""CD117:low/CD117- (no axiom on any alt.)"", ""CD294+"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001081"", ""label"": ""group 2 innate lymphoid cell, human"", ""score"": 23, ""matched"": [""CD3-"", ""CD19-"", ""CD3-"", ""CD127+"", ""CD294+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD56-"", ""CD117:low/CD117- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 26, ""rank_best"": 25, ""rank_worst"": 32}]" +provisional/SOULCAP:SC000010/Exact provisional SOULCAP:SC000010 Exact "[""CL:0001078""]" below_top_5 118 118 120 [] "[{""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 29, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD117+ (dim)""], ""gaps"": [""CD34-"", ""CD127+"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002344"", ""label"": ""CD56-negative, CD161-positive immature natural killer cell, human"", ""score"": 29, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD34-"", ""CD3-"", ""CD19-"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD117+""], ""gaps"": [""CD45+"", ""CD127+"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000989"", ""label"": ""CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117+"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000992"", ""label"": ""immature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117+"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000993"", ""label"": ""mature CD11c-low plasmacytoid dendritic cell"", ""score"": 27, ""matched"": [""CD34-"", ""CD3-"", ""CD19-"", ""CD45+"", ""CD3-"", ""CD56- (1 of 2 alt.)"", ""CD11C:not:high (dim) (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD127+"", ""CD117+"", ""CD294-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001078"", ""label"": ""group 3 innate lymphoid cell, human"", ""score"": 19, ""matched"": [""CD3-"", ""CD19-"", ""CD3-"", ""CD127+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD34-"", ""CD45+"", ""CD56:low/CD56- (no axiom on any alt.)"", ""CD117+"", ""CD294-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 118, ""rank_best"": 118, ""rank_worst"": 120}]" +provisional/SOULCAP:SC000011/Exact provisional SOULCAP:SC000011 Exact "[""CL:0000990""]" below_top_5 18 15 21 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 21, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD3-"", ""CD19-"", ""CD56-"", ""CD127-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""CD11C:high"", ""HLA-DR+""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000782"", ""label"": ""myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002399"", ""label"": ""CD1c-positive myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000990"", ""label"": ""conventional dendritic cell"", ""score"": 13, ""matched"": [""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD123:not:high/CD193- (no axiom on any alt.)"", ""CD123:not:high/CD303- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 18, ""rank_best"": 15, ""rank_worst"": 21}]" +provisional/SOULCAP:SC000012/Exact provisional SOULCAP:SC000012 Exact "[""CL:0002394""]" hit_at_5 2 1 2 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD141+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 21, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD3-"", ""CD19-"", ""CD56-"", ""CD127-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""CD11C:high"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000782"", ""label"": ""myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0011031"", ""label"": ""monocyte-derived dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD141+"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD141+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C-"", ""CD127-"", ""CD172A-"", ""FCER1A-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 2, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000013/Exact provisional SOULCAP:SC000013 Exact "[""CL:0002399""]" hit_at_5 2 1 2 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002399"", ""label"": ""CD1c-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD1C+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 21, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD14-"", ""CD3-"", ""CD19-"", ""CD56-"", ""CD127-""], ""gaps"": [""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""CD11C:high"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000782"", ""label"": ""myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002394"", ""label"": ""CD141-positive myeloid dendritic cell"", ""score"": 20, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD1C+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0002399"", ""label"": ""CD1c-positive myeloid dendritic cell"", ""score"": 24, ""matched"": [""CD123:not:high (1 of 2 alt.)"", ""CD123:not:high (1 of 2 alt.)"", ""CD11C:high (hi)"", ""CD1C+"", ""CD3-"", ""CD19-"", ""CD56-""], ""gaps"": [""CD14-"", ""CD16-"", ""CD45+"", ""CD33:high/CD64+ (no axiom on any alt.)"", ""HLA-DR+"", ""CD141:low/CD141- (no axiom on any alt.)"", ""CD127-"", ""CD172A+"", ""FCER1A:low/FCER1A- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 2, ""rank_best"": 1, ""rank_worst"": 2}]" +provisional/SOULCAP:SC000014/Exact provisional SOULCAP:SC000014 Exact "[""CL:0001058""]" below_top_5 34 27 42 [] "[{""cl_id"": ""CL:0000991"", ""label"": ""CD11c-negative plasmacytoid dendritic cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD303+ (1 of 3 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000994"", ""label"": ""immature CD11c-negative plasmacytoid dendritic cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD303+ (1 of 3 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000996"", ""label"": ""mature CD11c-negative plasmacytoid dendritic cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD303+ (1 of 3 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002008"", ""label"": ""CD34-positive, CD38-positive eosinophil progenitor cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD193-/FCER1A-/CD303+ (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD193-/FCER1A-/CD303+ (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0001058"", ""label"": ""plasmacytoid dendritic cell, human"", ""score"": 12, ""matched"": [""CD3-"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD45+"", ""CD33:low/CD33+/CD123:high (no axiom on any alt.)"", ""CD193-/FCER1A-/CD303+ (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 27, ""rank_worst"": 42}]" +provisional/SOULCAP:SC000015/Exact provisional SOULCAP:SC000015 Exact "[""CL:0000043""]" hit_at_5 3 3 7 [] "[{""cl_id"": ""CL:0000614"", ""label"": ""basophilic myelocyte"", ""score"": 18, ""matched"": [""CD3-"", ""CD33+ (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-"", ""CD16-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD14-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [""CD15-/CD66B- (all alt. conflict)""], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002008"", ""label"": ""CD34-positive, CD38-positive eosinophil progenitor cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD123+ (1 of 2 alt.)"", ""CD56-"", ""CD19-"", ""CD14-""], ""gaps"": [""CD193+/FCER1A+/HLA-DR-/CD303- (no axiom on any alt.)"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD123+ (hi) (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000612"", ""label"": ""eosinophilic myelocyte"", ""score"": 17, ""matched"": [""CD3-"", ""CD33+ (1 of 2 alt.)"", ""CD193+ (1 of 4 alt.)"", ""CD56-"", ""CD19-"", ""CD16-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD14-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [""CD15-/CD66B- (all alt. conflict)""], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000767"", ""label"": ""basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD123+ (hi) (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD123+ (hi) (1 of 2 alt.)"", ""CD193+ (hi) (1 of 4 alt.)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD127-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD14-"", ""CD16-"", ""FCER1A+"", ""HLA-DR-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 3, ""rank_best"": 3, ""rank_worst"": 7}]" +provisional/SOULCAP:SC000016/Exact provisional SOULCAP:SC000016 Exact "[""CL:0000043""]" hit_at_5 1 1 4 [] "[{""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000767"", ""label"": ""basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000768"", ""label"": ""immature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000770"", ""label"": ""band form basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000942"", ""label"": ""thymic plasmacytoid dendritic cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD45+"", ""CD123+"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD193+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000043"", ""label"": ""mature basophil"", ""score"": 17, ""matched"": [""CD3-"", ""CD193+ (hi)"", ""CD123+ (hi)"", ""CD56-"", ""CD19-""], ""gaps"": [""CD15-/CD66B- (no axiom on any alt.)"", ""CD45+"", ""CD127-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 4}]" +provisional/SOULCAP:SC000017/Exact provisional SOULCAP:SC000017 Exact "[""CL:0000576""]" invalid_profile "[""CL:0000576""]" invalid expression in Required exclusion: unexpected ')' in group [] [] +provisional/SOULCAP:SC000018/Exact provisional SOULCAP:SC000018 Exact "[""CL:0000860""]" invalid_profile [] invalid expression in Required exclusion: unexpected ')' in group [] [] +provisional/SOULCAP:SC000019/Exact provisional SOULCAP:SC000019 Exact "[""CL:0000875""]" invalid_profile [] invalid expression in Required exclusion: unexpected ')' in group [] [] +provisional/SOULCAP:SC000020/Exact provisional SOULCAP:SC000020 Exact "[""CL:0002393""]" invalid_profile [] invalid expression in Required exclusion: unexpected ')' in group [] [] +provisional/SOULCAP:SC000021/Exact provisional SOULCAP:SC000021 Exact "[""CL:0000775""]" below_top_5 9 7 16 [] "[{""cl_id"": ""CL:0000582"", ""label"": ""neutrophilic metamyelocyte"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD19-"", ""CD33+ (1 of 2 alt.)""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001021"", ""label"": ""CD34-positive, CD38-positive common lymphoid progenitor"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD45+"", ""CD19-""], ""gaps"": [""CD123-"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD123-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD123-"", ""CD19-""], ""gaps"": [""CD45+"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002029"", ""label"": ""Fc-epsilon RIalpha-low mast cell progenitor"", ""score"": 18, ""matched"": [""CD3-"", ""CD56-"", ""CD14- (1 of 2 alt.)"", ""CD45+"", ""CD19-""], ""gaps"": [""CD123-"", ""CD15:high/CD66B+ (no axiom on any alt.)"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000775"", ""label"": ""neutrophil"", ""score"": 16, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD193-"", ""CD16:high"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 9, ""rank_best"": 7, ""rank_worst"": 16}]" +provisional/SOULCAP:SC000022/Exact provisional SOULCAP:SC000022 Exact "[""CL:0000771""]" hit_at_5 4 2 7 [] "[{""cl_id"": ""CL:0000612"", ""label"": ""eosinophilic myelocyte"", ""score"": 26, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD16-"", ""CD19-"", ""CD33+ (1 of 2 alt.)""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000041"", ""label"": ""mature eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000580"", ""label"": ""neutrophilic myelocyte"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD16-"", ""CD19-"", ""CD33+ (1 of 2 alt.)""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD193+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000771"", ""label"": ""eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000772"", ""label"": ""immature eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000771"", ""label"": ""eosinophil"", ""score"": 20, ""matched"": [""CD3-"", ""CD56-"", ""CD66B+ (1 of 2 alt.)"", ""CD193+"", ""CD19-""], ""gaps"": [""CD14:low/CD14- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD16-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD64-/CD33+ (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 2, ""rank_worst"": 7}]" +provisional/SOULCAP:SC000023/Exact provisional SOULCAP:SC000023 Exact "[""CL:0000236""]" target_not_in_index "[""CL:0000236""]" "[{""cl_id"": ""CL:0000819"", ""label"": ""B-1 B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000820"", ""label"": ""B-1a B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000821"", ""label"": ""B-1b B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000843"", ""label"": ""follicular B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000024/Exact provisional SOULCAP:SC000024 Exact "[""CL:0000946""]" target_not_in_index "[""CL:0000946""]" "[{""cl_id"": ""CL:0000949"", ""label"": ""IgD plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000950"", ""label"": ""IgE plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000980"", ""label"": ""plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000982"", ""label"": ""IgG plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000983"", ""label"": ""IgM plasmablast"", ""score"": 18, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000025/Exact provisional SOULCAP:SC000025 Exact "[""CL:0000980""]" hit_at_5 3 1 7 [] "[{""cl_id"": ""CL:0000949"", ""label"": ""IgD plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000950"", ""label"": ""IgE plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000980"", ""label"": ""plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000982"", ""label"": ""IgG plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000983"", ""label"": ""IgM plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000980"", ""label"": ""plasmablast"", ""score"": 23, ""matched"": [""CD3-"", ""CD19+"", ""CD27+ (hi) (1 of 2 alt.)"", ""CD38:high (hi)"", ""CD138-"", ""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 3, ""rank_best"": 1, ""rank_worst"": 7}]" +provisional/SOULCAP:SC000026/Exact provisional SOULCAP:SC000026 Exact "[""CL:0000786""]" below_top_5 31 31 53 [] "[{""cl_id"": ""CL:0002047"", ""label"": ""fraction B precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002049"", ""label"": ""fraction C precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002050"", ""label"": ""fraction C' precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002051"", ""label"": ""CD38-high pre-BCR positive cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD19+"", ""CD38:high (hi)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002052"", ""label"": ""fraction D precursor B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD45+"", ""CD19+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD138+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 8, ""matched"": [""CD138+"", ""CD20-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD3-"", ""CD56-"", ""CD45+"", ""CD19+"", ""CD27+/CD27:high (no axiom on any alt.)"", ""CD38:high"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 31, ""rank_best"": 31, ""rank_worst"": 53}]" +provisional/SOULCAP:SC000028/Broad provisional SOULCAP:SC000028 Broad "[""CL:0000818""]" hit_at_5 1 1 6 [] "[{""cl_id"": ""CL:0000818"", ""label"": ""transitional stage B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000958"", ""label"": ""T1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000959"", ""label"": ""T2 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000960"", ""label"": ""T3 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:high/CD10:high (no axiom on any alt.)"", ""CD24:high"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000818"", ""label"": ""transitional stage B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38:high (hi) (1 of 2 alt.)"", ""CD24:high (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 6}]" +provisional/SOULCAP:SC000029/Exact provisional SOULCAP:SC000029 Exact "[""CL:0000785""]" below_top_5 43 43 45 [] "[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002055"", ""label"": ""CD38-negative immature B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000785"", ""label"": ""mature B cell"", ""score"": 10, ""matched"": [""CD3-"", ""CD19+ (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-"", ""CD20+""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 43, ""rank_best"": 43, ""rank_worst"": 45}]" +provisional/SOULCAP:SC000030/Exact provisional SOULCAP:SC000030 Exact "[""CL:0000960""]" below_top_5 20 13 26 [] "[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10:low (no axiom on any alt.)"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10:low (no axiom on any alt.)"", ""CD24+"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002054"", ""label"": ""fraction E immature B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+"", ""CD127-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low/CD38-/CD10:low (no axiom on any alt.)"", ""IGD+"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000960"", ""label"": ""T3 B cell"", ""score"": 15, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10:low (no axiom on any alt.)"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 20, ""rank_best"": 13, ""rank_worst"": 26}]" +provisional/SOULCAP:SC000031/Exact provisional SOULCAP:SC000031 Exact "[""CL:0000788""]" hit_at_5 5 5 8 [] "[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000788"", ""label"": ""naive B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000788"", ""label"": ""naive B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 5, ""rank_best"": 5, ""rank_worst"": 8}]" +provisional/SOULCAP:SC000032/Exact provisional SOULCAP:SC000032 Exact "[""CL:0000981""]" hit_at_5 5 5 8 [] "[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 18, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 5, ""rank_best"": 5, ""rank_worst"": 8}]" +provisional/SOULCAP:SC000033/Broad provisional SOULCAP:SC000033 Broad "[""CL:0000981""]" below_top_5 12 12 19 [] "[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 23, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002055"", ""label"": ""CD38-negative immature B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+ (dim)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000843"", ""label"": ""follicular B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000959"", ""label"": ""T2 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 12, ""rank_best"": 12, ""rank_worst"": 19}]" +provisional/SOULCAP:SC000034/Broad provisional SOULCAP:SC000034 Broad "[""CL:0000981""]" hit_at_5 4 4 6 [] "[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002103"", ""label"": ""IgG-positive double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24-"", ""IGD-"", ""CD21-"", ""CD11C+"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 4, ""rank_worst"": 6}]" +provisional/SOULCAP:SC000035/Broad provisional SOULCAP:SC000035 Broad "[""CL:0000981""]" hit_at_5 5 5 12 [] "[{""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000958"", ""label"": ""T1 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD21-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)"", ""IGD-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002109"", ""label"": ""B220-positive CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002110"", ""label"": ""B220-low CD38-positive naive B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21-"", ""CD11C-"", ""CD185-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 5, ""rank_best"": 5, ""rank_worst"": 12}]" +provisional/SOULCAP:SC000036/Broad provisional SOULCAP:SC000036 Broad "[""CL:0000981""]" below_top_5 12 12 19 [] "[{""cl_id"": ""CL:0000961"", ""label"": ""Bm1 B cell"", ""score"": 23, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002055"", ""label"": ""CD38-negative immature B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD38- (1 of 3 alt.)"", ""CD21+ (dim)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002102"", ""label"": ""CD38-negative naive B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD38- (1 of 3 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000843"", ""label"": ""follicular B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD27-"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000959"", ""label"": ""T2 B cell"", ""score"": 19, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD24+ (hi)"", ""CD21+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27-"", ""CD38:low (hi)/CD38- (hi)/CD10- (no axiom on any alt.)"", ""IGD-"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000981"", ""label"": ""double negative memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27-"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38-/CD10- (no axiom on any alt.)"", ""CD24+"", ""IGD-"", ""CD21+"", ""CD11C-"", ""CD185+"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 12, ""rank_best"": 12, ""rank_worst"": 19}]" +provisional/SOULCAP:SC000037/Exact provisional SOULCAP:SC000037 Exact "[""CL:0000787""]" below_top_5 39 39 42 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002108"", ""label"": ""CD38-negative IgG memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000787"", ""label"": ""memory B cell"", ""score"": 12, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 39, ""rank_best"": 39, ""rank_worst"": 42}]" +provisional/SOULCAP:SC000039/Exact provisional SOULCAP:SC000039 Exact "[""CL:0000970""]" below_top_5 13 13 14 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002116"", ""label"": ""B220-low CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000970"", ""label"": ""unswitched memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD+"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 13, ""rank_best"": 13, ""rank_worst"": 14}]" +provisional/SOULCAP:SC000040/Exact provisional SOULCAP:SC000040 Exact "[""CL:0000971""]" below_top_5 33 33 39 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002108"", ""label"": ""CD38-negative IgG memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 20, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000971"", ""label"": ""IgM memory B cell"", ""score"": 13, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD27+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 33, ""rank_best"": 33, ""rank_worst"": 39}]" +provisional/SOULCAP:SC000041/Exact provisional SOULCAP:SC000041 Exact "[""CL:0000972""]" below_top_5 14 13 18 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 25, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002111"", ""label"": ""CD38-negative unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002115"", ""label"": ""B220-positive CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002116"", ""label"": ""B220-low CD38-positive unswitched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000972"", ""label"": ""class switched memory B cell"", ""score"": 17, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 14, ""rank_best"": 13, ""rank_worst"": 18}]" +provisional/SOULCAP:SC000042/Exact provisional SOULCAP:SC000042 Exact "[""CL:0000973""]" below_top_5 18 17 19 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002118"", ""label"": ""CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002120"", ""label"": ""CD24-positive CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002121"", ""label"": ""CD24-negative CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000973"", ""label"": ""IgA memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""IGA+"", ""IGG-"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 18, ""rank_best"": 17, ""rank_worst"": 19}]" +provisional/SOULCAP:SC000043/Exact provisional SOULCAP:SC000043 Exact "[""CL:0000979""]" below_top_5 18 17 22 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002118"", ""label"": ""CD38-negative IgG-negative class switched memory B cell"", ""score"": 22, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002120"", ""label"": ""CD24-positive CD38-negative IgG-negative class switched memory B cell"", ""score"": 22, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002121"", ""label"": ""CD24-negative CD38-negative IgG-negative class switched memory B cell"", ""score"": 22, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 4, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000979"", ""label"": ""IgG memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG+"", ""IGE-"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 18, ""rank_best"": 17, ""rank_worst"": 22}]" +provisional/SOULCAP:SC000044/Exact provisional SOULCAP:SC000044 Exact "[""CL:0000948""]" below_top_5 17 17 19 [] "[{""cl_id"": ""CL:0002112"", ""label"": ""B220-positive CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002113"", ""label"": ""B220-low CD38-negative unswitched memory B cell"", ""score"": 24, ""matched"": [""CD3-"", ""CD45+ (dim)"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002118"", ""label"": ""CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002120"", ""label"": ""CD24-positive CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002121"", ""label"": ""CD24-negative CD38-negative IgG-negative class switched memory B cell"", ""score"": 21, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD38- (1 of 2 alt.)"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000948"", ""label"": ""IgE memory B cell"", ""score"": 16, ""matched"": [""CD3-"", ""CD20+ (1 of 2 alt.)"", ""CD27+"", ""CD20+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD56-"", ""CD45+"", ""CD38:low/CD38- (no axiom on any alt.)"", ""IGD-"", ""IGM-"", ""IGA-"", ""IGG-"", ""IGE+"", ""CD127-"", ""CD16-"", ""CD15-/CD66B- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD123-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 17, ""rank_best"": 17, ""rank_worst"": 19}]" +provisional/SOULCAP:SC000045/Exact provisional SOULCAP:SC000045 Exact "[""CL:0000084""]" target_not_in_index "[""CL:0000084""]" "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000046/Broad provisional SOULCAP:SC000046 Broad "[""CL:4052055""]" below_top_5 34 2 34 [] "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 2, ""rank_worst"": 34}]" +provisional/SOULCAP:SC000047/Broad provisional SOULCAP:SC000047 Broad "[""CL:4052055""]" below_top_5 42 13 42 [] "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002430"", ""label"": ""CD4-intermediate, CD8-positive double-positive thymocyte"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002431"", ""label"": ""CD4-positive, CD8-intermediate double-positive thymocyte"", ""score"": 9, ""matched"": [""CD4+"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD4+"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 42, ""rank_best"": 13, ""rank_worst"": 42}]" +provisional/SOULCAP:SC000048/Broad provisional SOULCAP:SC000048 Broad "[""CL:4052055""]" below_top_5 63 39 63 [] "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 14, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 14, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 14, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""CD4-"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 63, ""rank_best"": 39, ""rank_worst"": 63}]" +provisional/SOULCAP:SC000049/Broad provisional SOULCAP:SC000049 Broad "[""CL:4052055""]" below_top_5 34 2 34 [] "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 2, ""rank_worst"": 34}]" +provisional/SOULCAP:SC000050/Broad provisional SOULCAP:SC000050 Broad "[""CL:4052055""]" below_top_5 70 42 70 [] "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4+"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 70, ""rank_best"": 42, ""rank_worst"": 70}]" +provisional/SOULCAP:SC000051/Broad provisional SOULCAP:SC000051 Broad "[""CL:4052055""]" below_top_5 63 34 63 [] "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4-"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 63, ""rank_best"": 34, ""rank_worst"": 63}]" +provisional/SOULCAP:SC000052/Broad provisional SOULCAP:SC000052 Broad "[""CL:4052055""]" below_top_5 42 9 42 [] "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4+"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 42, ""rank_best"": 9, ""rank_worst"": 42}]" +provisional/SOULCAP:SC000053/Broad provisional SOULCAP:SC000053 Broad "[""CL:4052055""]" below_top_5 54 30 54 [] "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD4-"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 54, ""rank_best"": 30, ""rank_worst"": 54}]" +provisional/SOULCAP:SC000054/Broad provisional SOULCAP:SC000054 Broad "[""CL:4052055""]" below_top_5 34 2 34 [] "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000570"", ""label"": ""parafollicular cell"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 34, ""rank_best"": 2, ""rank_worst"": 34}]" +provisional/SOULCAP:SC000055/Broad provisional SOULCAP:SC000055 Broad "[""CL:4052055""]" below_top_5 70 42 70 [] "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4+"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 70, ""rank_best"": 42, ""rank_worst"": 70}]" +provisional/SOULCAP:SC000056/Broad provisional SOULCAP:SC000056 Broad "[""CL:4052055""]" below_top_5 63 34 63 [] "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4-"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 63, ""rank_best"": 34, ""rank_worst"": 63}]" +provisional/SOULCAP:SC000057/Broad provisional SOULCAP:SC000057 Broad "[""CL:4052055""]" below_top_5 42 9 42 [] "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4+"", ""CD8+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 42, ""rank_best"": 9, ""rank_worst"": 42}]" +provisional/SOULCAP:SC000058/Broad provisional SOULCAP:SC000058 Broad "[""CL:4052055""]" below_top_5 54 30 54 [] "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD56+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:4052055"", ""label"": ""mature NK T cell, human"", ""score"": 5, ""matched"": [""CD56+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD4-"", ""CD8-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 54, ""rank_best"": 30, ""rank_worst"": 54}]" +provisional/SOULCAP:SC000059/Exact provisional SOULCAP:SC000059 Exact "[""CL:0000814""]" invalid_profile [] invalid expression in Required phenotypic markers: mixed '|' and space in a group [] [] +provisional/SOULCAP:SC000060/Exact provisional SOULCAP:SC000060 Exact "[""CL:0000789""]" target_not_in_index "[""CL:0000789""]" "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000061/Exact provisional SOULCAP:SC000061 Exact "[""CL:0000798""]" target_not_in_index "[""CL:0000798""]" "[{""cl_id"": ""CL:0002467"", ""label"": ""Gr1-high myeloid suppressor cell"", ""score"": 7, ""matched"": [""CD45+"", ""CD11C:not:high (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000097"", ""label"": ""mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000484"", ""label"": ""connective tissue type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000485"", ""label"": ""mucosal type mast cell"", ""score"": 5, ""matched"": [""CD123-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000786"", ""label"": ""plasma cell"", ""score"": 5, ""matched"": [""CD20- (1 of 2 alt.)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000062/Broad provisional SOULCAP:SC000062 Broad "[""CL:0000624""]" below_top_5 9 6 36 [] "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000624"", ""label"": ""CD4-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 9, ""rank_best"": 6, ""rank_worst"": 36}]" +provisional/SOULCAP:SC000063/Broad provisional SOULCAP:SC000063 Broad "[""CL:0000625""]" hit_at_5 4 4 27 [] "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 4, ""rank_worst"": 27}]" +provisional/SOULCAP:SC000064/Broad provisional SOULCAP:SC000064 Broad "[""CL:0000789""]" target_not_in_index "[""CL:0000789""]" "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000065/Broad provisional SOULCAP:SC000065 Broad "[""CL:0000084""]" target_not_in_index "[""CL:0000084""]" "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000066/Exact provisional SOULCAP:SC000066 Exact "[""CL:0000624""]" below_top_5 9 6 36 [] "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000624"", ""label"": ""CD4-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 9, ""rank_best"": 6, ""rank_worst"": 36}]" +provisional/SOULCAP:SC000067/Exact provisional SOULCAP:SC000067 Exact "[""CL:0000625""]" hit_at_5 4 4 27 [] "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 4, ""rank_best"": 4, ""rank_worst"": 27}]" +provisional/SOULCAP:SC000068/Broad provisional SOULCAP:SC000068 Broad "[""CL:0000789""]" target_not_in_index "[""CL:0000789""]" "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000069/Broad provisional SOULCAP:SC000069 Broad "[""CL:0000789""]" target_not_in_index "[""CL:0000789""]" "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 11, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB+/TCRGD- (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000070/Broad provisional SOULCAP:SC000070 Broad "[""CL:0000798""]" target_not_in_index "[""CL:0000798""]" "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001044"", ""label"": ""effector CD4-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001046"", ""label"": ""memory CCR4-positive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001204"", ""label"": ""CD4-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002677"", ""label"": ""naive regulatory T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4+"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000071/Broad provisional SOULCAP:SC000071 Broad "[""CL:0000798""]" target_not_in_index "[""CL:0000798""]" "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001050"", ""label"": ""effector CD8-positive, alpha-beta T cell"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001203"", ""label"": ""CD8-positive, alpha-beta memory T cell, CD45RO-positive"", ""score"": 13, ""matched"": [""CD45+"", ""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000625"", ""label"": ""CD8-positive, alpha-beta T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000794"", ""label"": ""CD8-positive, alpha-beta cytotoxic T cell"", ""score"": 9, ""matched"": [""CD4-"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000072/Broad provisional SOULCAP:SC000072 Broad "[""CL:0000798""]" target_not_in_index "[""CL:0000798""]" "[{""cl_id"": ""CL:0002039"", ""label"": ""immature NK T cell stage I, mouse"", ""score"": 9, ""matched"": [""CD4+ (dim)"", ""CD8+ (dim)""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000809"", ""label"": ""double-positive, alpha-beta thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002427"", ""label"": ""resting double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002428"", ""label"": ""double-positive blast"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002429"", ""label"": ""CD69-positive double-positive thymocyte"", ""score"": 8, ""matched"": [""CD4+"", ""CD8+""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 0, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] +provisional/SOULCAP:SC000073/Exact provisional SOULCAP:SC000073 Exact "[""CL:0000803""]" hit_at_5 1 1 6 [] "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000924"", ""label"": ""CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000928"", ""label"": ""activated CD4-negative, CD8-negative type I NK T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000929"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000930"", ""label"": ""CD4-negative, CD8-negative type I NK T cell secreting interleukin-4"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000803"", ""label"": ""CD4-negative CD8-negative gamma-delta intraepithelial T cell"", ""score"": 10, ""matched"": [""CD4-"", ""CD8-""], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""CD45+"", ""CD3+"", ""TCRAB-/TCRGD+ (no axiom on any alt.)"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 1, ""rank_best"": 1, ""rank_worst"": 6}]" +provisional/SOULCAP:SC000074/Exact provisional SOULCAP:SC000074 Exact "[""CL:0000940""]" invalid_profile "[""CL:0000940""]" invalid expression in Required phenotypic markers: mixed '|' and space in a group [] [] +provisional/SOULCAP:SC000082/Exact provisional SOULCAP:SC000082 Exact "[""CL:0000904""]" below_top_5 238 238 243 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000904"", ""label"": ""central memory CD4-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 238, ""rank_best"": 238, ""rank_worst"": 243}]" +provisional/SOULCAP:SC000085/Exact provisional SOULCAP:SC000085 Exact "[""CL:0000907""]" below_top_5 239 238 243 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000907"", ""label"": ""central memory CD8-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 239, ""rank_best"": 238, ""rank_worst"": 243}]" +provisional/SOULCAP:SC000087/Exact provisional SOULCAP:SC000087 Exact "[""CL:0000898""]" below_top_5 252 243 261 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000898"", ""label"": ""naive T cell"", ""score"": 2, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 252, ""rank_best"": 243, ""rank_worst"": 261}]" +provisional/SOULCAP:SC000089/Exact provisional SOULCAP:SC000089 Exact "[""CL:0000895""]" below_top_5 238 238 242 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000895"", ""label"": ""naive thymus-derived CD4-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 238, ""rank_best"": 238, ""rank_worst"": 242}]" +provisional/SOULCAP:SC000092/Exact provisional SOULCAP:SC000092 Exact "[""CL:0000900""]" below_top_5 253 242 258 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000900"", ""label"": ""naive thymus-derived CD8-positive, alpha-beta T cell"", ""score"": 2, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 253, ""rank_best"": 242, ""rank_worst"": 258}]" +provisional/SOULCAP:SC000096/Exact provisional SOULCAP:SC000096 Exact "[""CL:0000905""]" below_top_5 238 238 247 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 12, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000905"", ""label"": ""effector memory CD4-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 238, ""rank_best"": 238, ""rank_worst"": 247}]" +provisional/SOULCAP:SC000099/Exact provisional SOULCAP:SC000099 Exact "[""CL:0000913""]" below_top_5 239 238 247 [] "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 12, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 2, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" "[{""cl_id"": ""CL:0000913"", ""label"": ""effector memory CD8-positive, alpha-beta T cell"", ""score"": 3, ""matched"": [], ""gaps"": [""CD14-/CD33-/CD64- (no axiom on any alt.)"", ""CD19-/CD20- (no axiom on any alt.)"", ""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 3, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": [], ""rank"": 239, ""rank_best"": 238, ""rank_worst"": 247}]" +provisional/SOULCAP:SC000103/Exact provisional SOULCAP:SC000103 Exact "[""CL:4030002""]" target_not_in_index "[""CL:4030002""]" "[{""cl_id"": ""CL:0001057"", ""label"": ""myeloid dendritic cell, human"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (hi) (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002000"", ""label"": ""Kit-positive erythroid progenitor cell"", ""score"": 13, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD123-""], ""gaps"": [""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)"", ""CD16-""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0000938"", ""label"": ""CD16-negative, CD56-bright natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0001024"", ""label"": ""CD34-positive, CD38-negative hematopoietic stem cell"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}, {""cl_id"": ""CL:0002343"", ""label"": ""decidual natural killer cell, human"", ""score"": 11, ""matched"": [""CD14- (1 of 3 alt.)"", ""CD19- (1 of 2 alt.)"", ""CD16-""], ""gaps"": [""CD123-"", ""HLA-DR:not:positive/CD11C:not:high (no axiom on any alt.)"", ""CD15-/CD66B- (no axiom on any alt.)""], ""contradictions"": [], ""hint_bonus"": 1, ""disqualified"": false, ""candidate_sources"": [""marker_axioms""], ""lexical_evidence"": null, ""resolution_evidence"": []}]" [] diff --git a/reports/resolver-refinement/pre_refinement_evaluation.json b/reports/resolver-refinement/pre_refinement_evaluation.json new file mode 100644 index 0000000..9072702 --- /dev/null +++ b/reports/resolver-refinement/pre_refinement_evaluation.json @@ -0,0 +1,35723 @@ +Warning: truncated output (original token count: 592769) +... 1322500 bytes omitted ... + +{ + "schema_version": 1, + "generated_utc": "2026-09-10T19:46:06.128515+00:00", + "inputs": { + "data/marker_combinations.csv": "29b476e499ac402094b3dbccc410d052010a9b804ca9865e2624dda3ba9bfc44", + "mappings/soulcap_entities.tsv": "b7d312081b5279669599ead19d3d201a1003ff4978eb814302f16c9783b659a8", + "mappings/curated_mappings.tsv": "2ce1d078ed3d374b0c96d04184bb3520d37a1970415ad08584e33bc26e31434e", + "reports/cl_pro_relationships.tsv": "293edb6a7dc435caf9d85a758425be9305eb4eb00c877074fdec4593ef0d1b3c", + "benchmark": "bb1ab9905205a1ab8738b6e9da0a8db382ad3a778eae1103a1279a75335aa706", + "marker_map": "4d1982db77c57a9a9e43b1fc883c5b0b32f0d69184e081764880baacb37992b7", + "term_cache": "148b2c3c6c4afce6d35e4d003bb3fbd1c30e2d7bcb43dad4a4a927e38233518d" + }, + "benchmark_path": "C:\\Users\\s28al\\SOULCAP_CL_Mapping\\mappings\\matcher_benchmark.tsv", + "matcher": { + "version": "0.1.0", + "source_hashes": { + "cl_match.py": "1bec5e9d880cfd34574ae55dfde29d4b62c745e9649a9b5d292d5697d848649f", + "phenotype.py": "6d3e7e59b884365fa48596fe1365b8630053b70a6259bb0e8f42413a55a9514a", + "marker_syntax.py": "e40620b1d804eec3c1f05251716092abd7f5a273e11ba91ce61a3345b1872ade", + "registry.py": "a225ca650e0278378566bf7134b3d8daa33dabee0c61c3d479d8affddf7a25fd", + "evaluation.py": 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"after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000045/Exact", + "change": "improved", + "before_rank": null, + "after_rank": 171, + "before_status": "target_not_in_index", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000046/Broad", + "change": "unchanged", + "before_rank": 34, + "after_rank": 34, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000047/Broad", + "change": "unchanged", + "before_rank": 42, + "after_rank": 42, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000048/Broad", + "change": "unchanged", + "before_rank": 63, + "after_rank": 63, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000049/Broad", + "change": "unchanged", + "before_rank": 34, + "after_rank": 34, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000050/Broad", + "change": "unchanged", + "before_rank": 70, + "after_rank": 70, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000051/Broad", + "change": "unchanged", + "before_rank": 63, + "after_rank": 63, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000052/Broad", + "change": "unchanged", + "before_rank": 42, + "after_rank": 42, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000053/Broad", + "change": "unchanged", + "before_rank": 54, + "after_rank": 54, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000054/Broad", + "change": "unchanged", + "before_rank": 34, + "after_rank": 34, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000055/Broad", + "change": "unchanged", + "before_rank": 70, + "after_rank": 70, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000056/Broad", + "change": "unchanged", + "before_rank": 63, + "after_rank": 63, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000057/Broad", + "change": "unchanged", + "before_rank": 42, + "after_rank": 42, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000058/Broad", + "change": "unchanged", + "before_rank": 54, + "after_rank": 54, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000059/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000060/Exact", + "change": "improved", + "before_rank": null, + "after_rank": 171, + "before_status": "target_not_in_index", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000061/Exact", + "change": "improved", + "before_rank": null, + "after_rank": 171, + "before_status": "target_not_in_index", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000062/Broad", + "change": "unchanged", + "before_rank": 9, + "after_rank": 9, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000063/Broad", + "change": "unchanged", + "before_rank": 4, + "after_rank": 4, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000064/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_retrieved" + }, + { + "case_id": "provisional/SOULCAP:SC000065/Broad", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "target_not_in_index", + "after_status": "target_not_retrieved" + }, + { + "case_id": "provisional/SOULCAP:SC000066/Exact", + "change": "unchanged", + "before_rank": 9, + "after_rank": 9, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000067/Exact", + "change": "unchanged", + "before_rank": 4, + "after_rank": 4, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000068/Broad", + "change": "improved", + "before_rank": null, + "after_rank": 113, + "before_status": "target_not_in_index", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000069/Broad", + "change": "improved", + "before_rank": null, + "after_rank": 125, + "before_status": "target_not_in_index", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000070/Broad", + "change": "improved", + "before_rank": null, + "after_rank": 134, + "before_status": "target_not_in_index", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000071/Broad", + "change": "improved", + "before_rank": null, + "after_rank": 127, + "before_status": "target_not_in_index", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000072/Broad", + "change": "improved", + "before_rank": null, + "after_rank": 106, + "before_status": "target_not_in_index", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000073/Exact", + "change": "unchanged", + "before_rank": 1, + "after_rank": 1, + "before_status": "hit_at_5", + "after_status": "hit_at_5" + }, + { + "case_id": "provisional/SOULCAP:SC000074/Exact", + "change": "unchanged", + "before_rank": null, + "after_rank": null, + "before_status": "invalid_profile", + "after_status": "invalid_profile" + }, + { + "case_id": "provisional/SOULCAP:SC000082/Exact", + "change": "unchanged", + "before_rank": 238, + "after_rank": 238, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000085/Exact", + "change": "unchanged", + "before_rank": 239, + "after_rank": 239, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000087/Exact", + "change": "unchanged", + "before_rank": 252, + "after_rank": 252, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000089/Exact", + "change": "unchanged", + "before_rank": 238, + "after_rank": 238, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000092/Exact", + "change": "unchanged", + "before_rank": 253, + "after_rank": 253, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000096/Exact", + "change": "unchanged", + "before_rank": 238, + "after_rank": 238, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000099/Exact", + "change": "unchanged", + "before_rank": 239, + "after_rank": 239, + "before_status": "below_top_5", + "after_status": "below_top_5" + }, + { + "case_id": "provisional/SOULCAP:SC000103/Exact", + "change": "improved", + "before_rank": null, + "after_rank": 240, + "before_status": "target_not_in_index", + "after_status": "below_top_5" + } + ] + } +} diff --git a/src/soulcap_cl_mapping/audit.py b/src/soulcap_cl_mapping/audit.py new file mode 100644 index 0000000..7f4b992 --- /dev/null +++ b/src/soulcap_cl_mapping/audit.py @@ -0,0 +1,794 @@ +"""Read-only audit of local SOULCAP artifacts; write a standalone dashboard.""" + +from __future__ import annotations + +import argparse +import csv +import hashlib +import json +import os +import re +from collections import Counter, defaultdict +from datetime import datetime, timezone +from pathlib import Path +from urllib.parse import quote, urlsplit + +from soulcap_cl_mapping import mapping_evidence, marker_resolution, phenotype, registry +from soulcap_cl_mapping.marker_syntax import ( + MARKER_COLUMNS, + MarkerSyntaxError, + parse_expression, +) + +INPUTS = { + "source": "data/marker_combinations.csv", + "entities": "mappings/soulcap_entities.tsv", + "mappings": "mappings/curated_mappings.tsv", + "axioms": "reports/cl_pro_relationships.tsv", + "markers": "marker_mappings/marker_protein_gene.csv", + "gaps": "reports/gaps.tsv", + "species": "reports/pro_marker_species_support.tsv", + "export": "reports/candidate_cl_mappings.sssom.tsv", + "manifest": "reports/candidate_cl_mappings.sssom.provenance.json", + "agreement": "reports/candidate_cl_mappings_agreement.tsv", + "ontology_report": "reports/cl_pro_relationships.md", + "narrative": "reports/candidate_cl_mappings_narrative.md", +} +REQUIRED = {"source", "entities", "mappings", "axioms", "markers"} +SCHEMAS = { + "source": {"Abbreviation", *MARKER_COLUMNS}, + "entities": { + "subject_id", + "Abbreviation", + "Parent", + "WB or PBMC", + "profile_signature", + }, + "mappings": {"subject_id", "cl_id", "cl_label", "match_type", "review_status"}, + "axioms": {"cell", "cell_label", "sense", "asserted", "cd_synonym"}, + "markers": {"marker_token", "pro_id", "gene_symbol"}, + "gaps": {"soulcap_abbreviation", "gap_type", "status", "description"}, + "species": {"cl_id", "pr_id", "species_support"}, + "export": {"subject_id", "object_id", "predicate_id", "comment"}, + "agreement": {"abbreviation", "agreement"}, +} + + +def marker_status(item: dict, available: bool) -> tuple[str, str]: + """Describe local documentation, not a new biological certification. + + Keep identifier completeness separate; a documented exception is not an + inferred protein mapping. Unknown missing identifiers still need review. + """ + if not available: + return "unavailable", "Marker registry unavailable." + notes = " ".join(r.get("notes", "") for r in item["records"]).lower() + if re.search(r"parsing artifact|parsing artefact", notes): + return ( + "source_artifact_needs_review", + "Registry notes describe a possible parsing artifact; source clarification is needed.", + ) + if re.search( + r"heterodimer|two-gene marker|not specific to a single gene|no single pr id", + notes, + ): + return ( + "documented_complex_or_family", + "Registry notes describe a complex, multi-gene, or non-single-protein marker; inspect the recorded representation.", + ) + if re.search( + r"not a specific protein|not a protein marker|non-protein|carbohydrate epitope|viability gate|generic reagent", + notes, + ): + return ( + "documented_nonprotein_or_reagent", + "Registry notes document a non-protein gate or reagent; a single gene/PRO mapping may not apply.", + ) + if len(item["pro_ids"]) > 1: + return ( + "multiple_proteins_needs_review", + "Multiple protein identifiers are recorded; do not assume single-protein equivalence.", + ) + if not item["pro_ids"]: + return ( + "no_pro_mapping", + "No PRO identifier and no documented representation exception; mapping review is needed.", + ) + if not item["gene_symbols"]: + return ( + "no_gene_mapping", + "PRO identifier recorded, but no gene symbol or documented representation exception; review is needed.", + ) + return ( + "mapped", + "PRO identifier and gene symbol recorded; this is not a biological sign-off.", + ) + + +def build_audit( + root: Path, now: datetime | None = None, *, marker_map: Path | None = None +) -> dict: + """Collect all findings, including damaged inputs, without modifying sources.""" + now = now or datetime.now(timezone.utc) + root = root.resolve() + resolver = marker_resolution.load(marker_map) if marker_map else None + findings: list[dict] = [] + + def issue(severity: str, code: str, subject: str, message: str) -> None: + findings.append( + dict(severity=severity, code=code, subject=subject, message=message) + ) + + tables: dict[str, list[dict]] = {} + texts: dict[str, str] = {} + inputs = [] + for name, relative in INPUTS.items(): + path = root / relative + meta: dict = { + "name": name, + "path": relative, + "status": "missing", + "required": name in REQUIRED, + } + try: + raw = path.read_bytes() + texts[name] = raw.decode("utf-8-sig") + meta.update( + status="available", + sha256=hashlib.sha256(raw).hexdigest(), + modified_utc=datetime.fromtimestamp( + path.stat().st_mtime, timezone.utc + ).isoformat(), + ) + if name in SCHEMAS: + lines = texts[name].splitlines(keepends=True) + if name == "export": + lines = [line for line in lines if not line.startswith("#")] + reader = csv.DictReader( + lines, + delimiter="," if name in ("source", "markers") else "\t", + strict=True, + ) + missing = SCHEMAS[name] - set(reader.fieldnames or []) + if missing: + raise ValueError("Missing columns: " + ", ".join(sorted(missing))) + rows = list(reader) + if any( + None in row or any(row.get(k) is None for k in SCHEMAS[name]) + for row in rows + ): + raise ValueError("Rows do not match the table header") + tables[name] = [ + {k: v if v is not None else "" for k, v in row.items()} + for row in rows + ] + meta["rows"] = len(rows) + except (OSError, ValueError, csv.Error) as exc: + if path.exists(): + meta["status"] = "invalid" + issue( + "error" if name in REQUIRED else "warning", + "input_" + meta["status"], + relative, + str(exc), + ) + inputs.append(meta) + + entities = tables.get("entities", []) + by_id: dict[str, list[dict]] = defaultdict(list) + for registered in entities: + by_id[registered["subject_id"]].append(registered) + for sid, records in by_id.items(): + if not sid or len(records) != 1: + issue( + "error", + "duplicate_entity_id", + sid, + f"{len(records)} registry rows; identity cannot be trusted.", + ) + + # Retain every row. Ambiguous lookups must not collapse into a dictionary. + sources = [] + uses: dict[str, list[str]] = defaultdict(list) + for number, row in enumerate(tables.get("source", []), 2): + key = registry.identity_key(row) + candidates = [e for e in entities if registry.identity_key(e) == key] + if row.get("subject_id"): + candidates = by_id.get(row["subject_id"], []) + elif len(candidates) > 1: + candidates = [ + e + for e in candidates + if e["profile_signature"] == registry.profile_signature(row) + ] + entity = ( + candidates[0] + if len(candidates) == 1 and len(by_id[candidates[0]["subject_id"]]) == 1 + else None + ) + sid = entity["subject_id"] if entity else f"unresolved:row-{number}" + if entity is None: + issue( + "error", + "unresolved_identity", + sid, + f"Sheet row {number} ({row['Abbreviation']}): no unique registered identity.", + ) + changed = bool( + entity and entity["profile_signature"] != registry.profile_signature(row) + ) + if changed: + issue( + "warning", + "profile_changed", + sid, + "Marker profile differs from the entity registry snapshot; review existing decisions.", + ) + errors = [] + tokens: set[str] = set() + for column in MARKER_COLUMNS: + expr = row[column] + if not expr.strip(): + continue + try: + tree = parse_expression(expr) + phenotype.clauses(expr) + tokens.update(tree.markers()) + except MarkerSyntaxError as exc: + errors.append({"column": column, "expression": expr, "error": str(exc)}) + if errors: + issue( + "error", + "invalid_profile", + sid, + f"{len(errors)} marker cell(s) cannot be scored.", + ) + for token in tokens: + uses[token].append(sid) + sources.append( + dict( + subject_id=sid, + sheet_row=number, + abbreviation=row["Abbreviation"].strip(), + label=row.get("Full Name", "").strip() or row["Abbreviation"].strip(), + parent=row.get("Parent", ""), + specimen=row.get("WB or PBMC", ""), + errors=errors, + profile_changed=changed, + tokens=sorted(tokens), + profile=row, + mappings=[], + ) + ) + + source_ids: dict[str, list[dict]] = defaultdict(list) + for source in sources: + source_ids[source["subject_id"]].append(source) + for sid, rows in source_ids.items(): + if len(rows) > 1: + issue( + "error", + "duplicate_source_identity", + sid, + f"{len(rows)} source rows resolve to this ID; evidence evaluation withheld.", + ) + if "source" in tables: + for sid in by_id.keys() - source_ids.keys(): + issue( + "warning", + "registry_without_source", + sid, + "Registered entity has no uniquely identified current source row.", + ) + + mappings = [] + pairs: set[tuple[str, str]] = set() + for number, entry in enumerate(tables.get("mappings", []), 2): + sid, cl_id = entry["subject_id"], entry["cl_id"] + pair = (sid, cl_id) + if pair in pairs: + issue( + "error", + "duplicate_mapping", + sid, + f"Duplicate proposal for {cl_id}, registry row {number}.", + ) + pairs.add(pair) + if sid not in by_id: + issue( + "error", + "unknown_mapping_subject", + sid, + "Proposal subject is not in the entity registry.", + ) + if entry["match_type"] not in ( + "Exact", + "Broad", + "Narrow", + "Related", + ) or not re.fullmatch(r"CL:\d{7}", cl_id): + issue( + "error", + "invalid_mapping", + sid, + f"Invalid relation or CL identifier at registry row {number}.", + ) + rows = source_ids.get(sid, []) + profile = rows[0]["profile"] if len(rows) == 1 else None + evidence = mapping_evidence.assess( + entry, profile, tables.get("axioms", []), resolver=resolver + ) + if "axioms" not in tables and profile is not None: + evidence["status"] = "unavailable_axioms" + if not rows: + issue( + "error", + "mapping_without_source", + sid, + f"Cannot evaluate proposal for {cl_id}: source unavailable or unresolved.", + ) + elif len(rows) > 1: + evidence["status"] = "ambiguous_source" + if evidence["contradictions"]: + issue( + "error", + "marker_contradiction", + sid, + f"{cl_id}: required-marker contradiction.", + ) + if evidence.get("sheet_confirmation") == "differs": + issue( + "error", + "sheet_disagreement", + sid, + f"Proposal {cl_id} differs from sheet entry {evidence['sheet_cl_id']}.", + ) + uncertain = entry.get("uncertain", "").strip().lower() == "true" + if uncertain: + issue( + "warning", + "uncertain_proposal", + sid, + f"Proposal for {cl_id} is explicitly uncertain.", + ) + absent_evidence = [ + k + for k in ("lexical_evidence", "literature_evidence", "curator_evidence") + if not entry.get(k, "").strip() + ] + if absent_evidence: + issue( + "info", + "evidence_not_recorded", + sid, + f"{cl_id}: structured fields empty: {', '.join(absent_evidence)}. Legacy narrative may contain evidence.", + ) + item = { + **entry, + "uncertain": uncertain, + "evidence": evidence, + "registry_row": number, + } + mappings.append(item) + for source in rows: + source["mappings"].append(item) + + for source in sources: + source["mapping_status"] = ( + "proposed" + if source["mappings"] + else "no_proposal" + if "mappings" in tables + else "unavailable" + ) + reverse: dict[str, dict] = {} + for entry in mappings: + row = reverse.setdefault( + entry["cl_id"], + { + "cl_id": entry["cl_id"], + "label": entry["cl_label"], + "subject_ids": [], + "relations": [], + "mappings": [], + }, + ) + row["mappings"].append(entry) + row["subject_ids"] = sorted({*row["subject_ids"], entry["subject_id"]}) + row["relations"] = sorted({*row["relations"], entry["match_type"]}) + + marker_index: dict[str, list[dict]] = defaultdict(list) + for row in tables.get("markers", []): + marker_index[row["marker_token"]].append(row) + markers = [] + for token in sorted(marker_index.keys() | uses.keys()): + records = marker_index.get(token, []) + item = dict( + marker_token=token, + affected_subjects=sorted(set(uses.get(token, []))), + records=records, + pro_ids=sorted({r["pro_id"] for r in records if r["pro_id"]}), + gene_symbols=sorted( + {r["gene_symbol"] for r in records if r["gene_symbol"]} + ), + ncbi_gene_ids=sorted( + {r.get("ncbi_gene_id", "") for r in records if r.get("ncbi_gene_id")} + ), + ) + item["identifier_status"] = ( + "unavailable" + if "markers" not in tables + else "no_pro_mapping" + if not item["pro_ids"] + else "no_gene_mapping" + if not item["gene_symbols"] + else "mapped" + ) + item["status"], item["status_reason"] = marker_status(item, "markers" in tables) + if resolver is not None: + item["resolution_policy"] = resolver["policies"].get(token.upper()) + item["classification_basis"] = ( + "Local registry identifiers and notes; not externally verified." + ) + markers.append(item) + + gaps = [] + for gap in tables.get("gaps", []): + label = gap["soulcap_abbreviation"].strip() + candidates = [s["subject_id"] for s in sources if s["abbreviation"] == label] + association = ( + "exact_abbreviation" + if len(candidates) == 1 + else "ambiguous" + if candidates + else "family_or_unresolved" + ) + gaps.append( + { + **gap, + "association": association, + "subject_ids": candidates + if association == "exact_abbreviation" + else [], + "candidate_subject_ids": candidates, + } + ) + + provenance: dict = { + "export_inputs": "unverifiable", + "differences": [], + "upstream_checked": False, + "agreement": "unavailable", + "ontology_snapshot_date": None, + "ontology_age_days": None, + } + if "manifest" in texts: + try: + manifest = json.loads(texts["manifest"]) + if not isinstance(manifest, dict) or not manifest: + raise ValueError("Provenance manifest must be a nonempty object") + actual = {i["path"]: i.get("sha256") for i in inputs} + expected_paths = { + INPUTS[k] for k in ("source", "entities", "mappings", "axioms") + } + normalized = {k.replace("\\", "/"): v for k, v in manifest.items()} + for recorded_path in sorted(expected_paths | normalized.keys()): + if ( + recorded_path not in actual + or not actual[recorded_path] + or normalized.get(recorded_path) != actual[recorded_path] + ): + provenance["differences"].append(recorded_path) + provenance["export_inputs"] = ( + "changed" if provenance["differences"] else "match" + ) + except (ValueError, AttributeError) as exc: + issue("warning", "invalid_manifest", INPUTS["manifest"], str(exc)) + if provenance["export_inputs"] != "match": + issue( + "warning", + "export_provenance", + "SSSOM export", + "Input provenance " + + provenance["export_inputs"] + + "; regenerate the export after resolving input issues.", + ) + if "export" in tables and "mappings" in tables: + predicates = { + "Exact": "skos:exactMatch", + "Broad": "skos:broadMatch", + "Narrow": "skos:narrowMatch", + "Related": "skos:relatedMatch", + } + expected = Counter( + (m["subject_id"], m["cl_id"], predicates.get(m["match_type"], "invalid")) + for m in mappings + ) + exported = Counter( + (m["subject_id"], m["object_id"], m["predicate_id"]) + for m in tables["export"] + ) + provenance["export_decisions"] = "match" if expected == exported else "changed" + if expected != exported: + issue( + "warning", + "export_decision_drift", + "SSSOM export", + "Exported subject/CL/relation records differ from the current registry.", + ) + if {"source", "entities", "axioms"} <= tables.keys(): + evidence_by_pair = {(m["subject_id"], m["cl_id"]): m for m in mappings} + stale = False + different_mode = False + for row in tables["export"]: + try: + stored = json.loads(row["comment"]) + current = evidence_by_pair.get( + (row["subject_id"], row["object_id"]) + ) + if isinstance(stored, dict) and isinstance( + stored.get("marker_evidence"), dict + ): + if bool( + stored["marker_evidence"].get("resolution_mode") + ) != bool(resolver): + different_mode = True + continue + for field in ( + "lexical_evidence", + "literature_evidence", + "curator_evidence", + ): + stored["marker_evidence"][field] = ( + stored["marker_evidence"].get(field) or "" + ) + if ( + not isinstance(stored, dict) + or current is None + or stored.get("marker_evidence") != current["evidence"] + ): + stale = True + except ValueError: + stale = True + provenance["export_evidence"] = ( + "changed" + if stale or expected != exported + else "different_resolution_mode" + if different_mode + else "match" + ) + if stale: + issue( + "warning", + "export_evidence_drift", + "SSSOM export", + "Stored evidence differs from current evaluation or cannot be decoded.", + ) + if "agreement" in tables: + provenance["agreement"] = ( + "historical_without_ids" + if "subject_id" + not in (tables["agreement"][0] if tables["agreement"] else {}) + else "unverified_snapshot" + ) + issue( + "info", + "historical_agreement", + "Agreement report", + "Not joined to current rows: this cached report has no verified input provenance.", + ) + match = re.search( + r"Generated (\d{4}-\d{2}-\d{2})", texts.get("ontology_report", "") + ) + if match: + try: + day = datetime.strptime(match[1], "%Y-%m-%d").date() + provenance.update( + ontology_snapshot_date=day.isoformat(), + ontology_age_days=(now.date() - day).days, + ) + except ValueError: + issue( + "warning", + "invalid_snapshot_date", + INPUTS["ontology_report"], + "Cannot parse declared generation date.", + ) + + findings.sort( + key=lambda f: ( + {"error": 0, "warning": 1, "info": 2}[f["severity"]], + f["code"], + f["subject"], + ) + ) + mapped_ids = {m["subject_id"] for m in mappings} + known_source_ids = { + s["subject_id"] + for s in sources + if not s["subject_id"].startswith("unresolved:") + } + summary = { + "registered_entities": len(by_id) if "entities" in tables else None, + "source_rows": len(sources) if "source" in tables else None, + "mapping_records": len(mappings) if "mappings" in tables else None, + "source_entities_with_proposals": len(known_source_ids & mapped_ids) + if {"source", "entities", "mappings"} <= tables.keys() + else None, + "source_entities_without_proposals": len(known_source_ids - mapped_ids) + if {"source", "entities", "mappings"} <= tables.keys() + else None, + "unresolved_source_rows": sum( + s["subject_id"].startswith("unresolved:") for s in sources + ) + if "source" in tables + else None, + "uncertain_proposals": sum(m["uncertain"] for m in mappings) + if "mappings" in tables + else None, + "invalid_marker_cells": sum(len(s["errors"]) for s in sources) + if "source" in tables + else None, + "invalid_profile_rows": sum(bool(s["errors"]) for s in sources) + if "source" in tables + else None, + "evidence_statuses": dict(Counter(m["evidence"]["status"] for m in mappings)), + "review_statuses": dict(Counter(m["review_status"] for m in mappings)), + "marker_statuses": dict(Counter(m["status"] for m in markers)), + "gap_records": len(gaps) if "gaps" in tables else None, + "finding_severities": dict(Counter(f["severity"] for f in findings)), + } + return dict( + schema_version=1, + resolution_mode="explicit_marker_policy" if resolver is not None else "legacy", + resolution_inputs={ + str(p): hashlib.sha256(p.read_bytes()).hexdigest() + for p in [marker_map, marker_resolution.policy_path(marker_map)] + } + if marker_map + else {}, + generated_utc=now.isoformat(), + summary=summary, + sources=sources, + mappings=mappings, + cl_terms=sorted(reverse.values(), key=lambda r: r["cl_id"]), + markers=markers, + gaps=gaps, + findings=findings, + inputs=inputs, + provenance=provenance, + species_support=tables.get("species", []), + limitations=[ + "All mappings remain proposals; marker compatibility does not establish equivalence.", + "Marker usage is extracted only from valid cells. Invalid cells can hide additional marker usage.", + "Empty structured evidence fields do not mean that literature does not exist; consult the narrative.", + "CL reverse view covers proposed targets, not the entire Cell Ontology.", + "No upstream services were queried. Snapshot age is not proof that an ontology is outdated.", + ], + ) + + +def render_html(data: dict) -> str: + template = ( + Path(__file__).with_name("audit_dashboard.html").read_text(encoding="utf-8") + ) + payload = ( + json.dumps(data, ensure_ascii=True) + .replace("<", "\\u003c") + .replace(">", "\\u003e") + .replace("&", "\\u0026") + ) + return template.replace("__AUDIT_DATA__", payload) + + +def add_links(data: dict, root: Path, out: Path) -> None: + """Add navigable references; never interpret a reference as markup or code.""" + for item in data["inputs"]: + item["href"] = quote( + Path(os.path.relpath(root / item["path"], out)).as_posix(), safe="/." + ) + for item in data["mappings"] + data["gaps"] + data["species_support"]: + links = [] + for field in ("evidence_source", "evidence", "source_ref", "repo_issue"): + value = item.get(field, "") + if not isinstance(value, str): + continue + for reference in re.findall( + r"https?://[^\s;<>\"]+|(?:reports|marker_mappings|data|mappings)/[^\s;<>\"]+", + value, + ): + parsed = urlsplit(reference) + if parsed.scheme in ("http", "https") and parsed.netloc: + links.append({"label": reference, "href": reference}) + elif not parsed.scheme: + target = (root / parsed.path).resolve() + if target.is_relative_to(root) and target.is_file(): + href = quote( + Path(os.path.relpath(target, out)).as_posix(), safe="/." + ) + if parsed.fragment: + href += "#" + quote(parsed.fragment) + links.append({"label": reference, "href": href}) + item["evidence_links"] = links + + +def render_summary(data: dict) -> str: + lines = [ + "# SOULCAP mapping audit", + "", + "Generated: " + data["generated_utc"], + "Mapping evidence resolution: " + data.get("resolution_mode", "legacy"), + "", + "[Open dashboard](audit_dashboard.html) · [Audit data](audit_data.json)", + "", + ] + for key, value in data["summary"].items(): + lines.append( + f"- {key.replace('_', ' ')}: {json.dumps(value) if isinstance(value, dict) else 'unavailable' if value is None else value}" + ) + lines += [ + "", + "## Provenance", + "", + "```json", + json.dumps(data["provenance"], indent=2), + "```", + "", + "## Review queue", + "", + ] + for f in data["findings"]: + text = f"{f['severity']} / {f['code']} / {f['subject']}: {f['message']}" + lines.append( + "- " + text.replace("\n", " ").replace("<", "<").replace(">", ">") + ) + lines += ["", "## Interpretation", ""] + ["- " + s for s in data["limitations"]] + return "\n".join(lines) + "\n" + + +def main(argv: list[str] | None = None) -> int: + parser = argparse.ArgumentParser(description=__doc__, prog="soulcap-audit") + parser.add_argument( + "--root", type=Path, default=Path(__file__).resolve().parents[2] + ) + parser.add_argument("--out-dir", type=Path, help="Default: reports/ under --root") + parser.add_argument( + "--marker-map", + type=Path, + help="Opt-in shared marker policy resolution for mapping evidence", + ) + parser.add_argument( + "--strict", + action="store_true", + help="Exit 1 after generating reports if any error findings exist", + ) + args = parser.parse_args(argv) + root = args.root.resolve() + out = (args.out_dir or root / "reports").resolve() + try: + data = build_audit(root, marker_map=args.marker_map) + except (OSError, ValueError) as exc: + parser.exit(1, f"Audit failed: {exc}\n") + from soulcap_cl_mapping.evaluation import dashboard_evaluation + + data["evaluation"] = dashboard_evaluation(root) + # Never overwrite an input artifact, even when --out-dir is customized. + out.mkdir(parents=True, exist_ok=True) + add_links(data, root, out) + (out / "audit_data.json").write_text( + json.dumps(data, ensure_ascii=False, indent=2) + "\n", encoding="utf-8" + ) + (out / "audit_summary.md").write_text(render_summary(data), encoding="utf-8") + (out / "audit_dashboard.html").write_text(render_html(data), encoding="utf-8") + print( + f"Wrote audit dashboard to {out / 'audit_dashboard.html'} ({len(data['findings'])} findings)" + ) + return ( + 1 + if args.strict and any(f["severity"] == "error" for f in data["findings"]) + else 0 + ) + + +if __name__ == "__main__": + raise SystemExit(main()) diff --git a/src/soulcap_cl_mapping/audit_dashboard.html b/src/soulcap_cl_mapping/audit_dashboard.html new file mode 100644 index 0000000..0b5518a --- /dev/null +++ b/src/soulcap_cl_mapping/audit_dashboard.html @@ -0,0 +1,87 @@ + + + + + +SOULCAP · Mapping audit + + + +
      SOULCAP × Cell Ontology

      Mapping audit

      A local review of mapping coverage, phenotype evidence, and source consistency.

      + +
      +
      +
      +

      Matcher evaluation

      +
      +

      Marker evidence

      Counts refer to proposal records, not distinct cell types.

      +

      Review status

      Curator review and marker support are separate evidence sources.

      +
      + +
      +

      +
      +
      Select a column heading to sort.
      +
      +

      How to interpret this audit

        Markdown summaryDownload audit JSON
        +

        Generated by soulcap-audit. Re-run the command to refresh this snapshot. No external scripts, fonts, or services are used.

        +
        + + + + diff --git a/src/soulcap_cl_mapping/candidate_index.py b/src/soulcap_cl_mapping/candidate_index.py new file mode 100644 index 0000000..9d2bddf --- /dev/null +++ b/src/soulcap_cl_mapping/candidate_index.py @@ -0,0 +1,131 @@ +"""Conservative protein/alias resolution and offline lexical candidate snapshots.""" + +from __future__ import annotations + +import argparse +import hashlib +import json +import re +import sqlite3 +from datetime import datetime, timezone +from pathlib import Path + + +def normalize(value: str) -> str: + return " ".join(re.findall(r"[a-z0-9]+", value.lower())) + + +def marker_resolver(path: Path) -> dict: + from soulcap_cl_mapping.marker_resolution import load + + return load(path) + + +def expand_axiom(row: dict, resolver: dict) -> tuple[set[str], list[dict]]: + from soulcap_cl_mapping.marker_resolution import expand_axiom as expand + + return expand(row, resolver) + + +def load_terms(path: Path) -> dict: + data = json.loads(path.read_text(encoding="utf-8")) + if data.get("schema_version") != 1 or not isinstance(data.get("terms"), list): + raise ValueError("Invalid lexical cache schema") + result = {} + for term in data["terms"]: + if ( + not re.fullmatch(r"CL:\d{7}", term["cl_id"]) + or term["cl_id"] in result + or not isinstance(term["label"], str) + or not term["label"].strip() + ): + raise ValueError("Duplicate or malformed lexical term") + if not isinstance(term["exact_synonyms"], list) or any( + not isinstance(s, str) for s in term["exact_synonyms"] + ): + raise ValueError("Malformed lexical synonyms") + result[term["cl_id"]] = term + return result + + +def lexical_candidates(row: dict, index: dict, limit: int = 20) -> dict: + query = normalize(row.get("Full Name", "") or row.get("Abbreviation", "")) + words = set(query.split()) - {"cell", "cells"} + if not words: + return {} + matches = [] + for cl_id, entry in index.items(): + if "lexical_names" not in entry: + continue + names = entry["lexical_names"] + exact = any(query == normalize(n) for n in names) + overlap = max( + ( + len(words & (set(normalize(n).split()) - {"cell", "cells"})) + / max(1, len(words | (set(normalize(n).split()) - {"cell", "cells"}))) + for n in names + ), + default=0, + ) + if exact or overlap >= 0.5: + matches.append( + ( + not exact, + -overlap, + cl_id, + {"query": query, "exact": exact, "token_jaccard": overlap}, + ) + ) + matches.sort() + return {cl_id: evidence for _, _, cl_id, evidence in matches[:limit]} + + +def cache_main(argv: list[str] | None = None) -> int: + parser = argparse.ArgumentParser( + description="Extract active CL labels/exact synonyms from a local OAK SQLite snapshot; no downloads." + ) + parser.add_argument("--database", required=True, type=Path) + parser.add_argument("--out", required=True, type=Path) + args = parser.parse_args(argv) + if args.database.resolve() == args.out.resolve(): + parser.error("Output must not overwrite the database") + with sqlite3.connect( + args.database.resolve().as_uri() + "?mode=ro", uri=True + ) as connection: + rows = connection.execute( + "SELECT subject,predicate,value FROM statements WHERE subject LIKE 'CL:%' AND predicate IN ('rdfs:label','oio:hasExactSynonym','owl:deprecated')" + ).fetchall() + terms: dict = {} + obsolete = set() + for subject, predicate, value in rows: + if not re.fullmatch(r"CL:\d{7}", subject): + continue + term = terms.setdefault( + subject, {"cl_id": subject, "label": "", "exact_synonyms": []} + ) + if predicate == "owl:deprecated" and str(value).lower() in ("true", "1"): + obsolete.add(subject) + elif predicate == "rdfs:label": + term["label"] = value + elif predicate == "oio:hasExactSynonym" and value: + term["exact_synonyms"].append(value) + active = [ + t for key, t in sorted(terms.items()) if key not in obsolete and t["label"] + ] + for term in active: + term["exact_synonyms"] = sorted(set(term["exact_synonyms"])) + if not active: + parser.error("No active CL terms found") + with args.database.open("rb") as fh: + checksum = hashlib.file_digest(fh, "sha256").hexdigest() + data = { + "schema_version": 1, + "generated_utc": datetime.now(timezone.utc).isoformat(), + "source_database_sha256": checksum, + "upstream_checked": False, + "terms": active, + } + args.out.parent.mkdir(parents=True, exist_ok=True) + args.out.write_text(json.dumps(data, indent=2) + "\n", encoding="utf-8") + print(f"Cached {len(active)} active CL terms in {args.out}") + return 0 diff --git a/src/soulcap_cl_mapping/cl_match.py b/src/soulcap_cl_mapping/cl_match.py index 2ab6c7d..1a8bbc5 100644 --- a/src/soulcap_cl_mapping/cl_match.py +++ b/src/soulcap_cl_mapping/cl_match.py @@ -37,13 +37,14 @@ import argparse import csv +import json import re import sys import time from pathlib import Path -from soulcap_cl_mapping import ols4_lookup -from soulcap_cl_mapping.marker_syntax import GATE, _is_qualifier, _split_word, _tokenize +from soulcap_cl_mapping import ols4_lookup, phenotype, registry +from soulcap_cl_mapping.marker_syntax import MARKER_COLUMNS, MarkerSyntaxError REPO_ROOT = Path(__file__).resolve().parents[2] DEFAULT_TSV = REPO_ROOT / "reports" / "cl_pro_relationships.tsv" @@ -54,6 +55,8 @@ DEFAULT_BATCH_TOP = 3 BATCH_TSV_FIELDS = [ + "subject_id", + "specimen", "abbreviation", "full_name", "parent", @@ -69,6 +72,9 @@ "gaps", "disqualified", "note", + "candidate_sources", + "lexical_evidence", + "resolution_evidence", ] # Weight applied to required vs ideal marker columns. @@ -96,7 +102,13 @@ def _parse_cd_synonyms(synonym_str: str) -> set[str]: return tokens -def build_cl_index(rows: list[dict]) -> dict[str, dict]: +def build_cl_index( + rows: list[dict], + marker_map: Path | None = None, + term_cache: Path | None = None, + *, + resolver: dict | None = None, +) -> dict[str, dict]: """Return ``{cl_id: {label, positive, negative, high, low}}`` from TSV rows. ``high``/``low`` track "has high/low plasma membrane amount" axioms @@ -104,6 +116,15 @@ def build_cl_index(rows: list[dict]) -> dict[str, dict]: marker is *expressed* (just at a given level), so they are never treated as equivalent to ``negative`` (marker absent) during scoring. """ + from soulcap_cl_mapping import candidate_index + + resolver = ( + resolver + if resolver is not None + else candidate_index.marker_resolver(marker_map) + if marker_map + else None + ) index: dict[str, dict] = {} for row in rows: cl_id = row["cell"] @@ -114,11 +135,38 @@ def build_cl_index(rows: list[dict]) -> dict[str, dict]: "negative": set(), "high": set(), "low": set(), + "intermediate": set(), } sense = row.get("sense", "") cd_tokens = _parse_cd_synonyms(row.get("cd_synonym", "")) - if sense in ("positive", "negative", "high", "low"): + if resolver is not None: + index[cl_id]["resolver"] = resolver + cd_tokens, evidence = candidate_index.expand_axiom(row, resolver) + index[cl_id].setdefault("resolution_evidence", []).append( + { + "sense": sense, + "pr": row.get("pr", ""), + "relation": row.get("relation", ""), + "asserted": row.get("asserted", ""), + "paths": evidence, + } + ) + if sense in ("positive", "negative", "high", "low", "intermediate"): index[cl_id][sense].update(cd_tokens) + if term_cache: + for cl_id, term in candidate_index.load_terms(term_cache).items(): + entry = index.setdefault( + cl_id, + { + "label": term["label"], + "lexical_only": True, + "positive": set(), + "negative": set(), + }, + ) + entry["lexical_names"] = [term["label"], *term["exact_synonyms"]] + if resolver is not None: + entry["resolver"] = resolver return index @@ -138,187 +186,21 @@ def _hint_words(*texts: str) -> set[str]: # --------------------------------------------------------------------------- # # Marker expression → (token, sense) extraction # --------------------------------------------------------------------------- # -def _qual_sense(qual: str) -> str: - """Map a qualifier string to ``'positive'``, ``'negative'``, or ``'variable'``.""" - parts = qual.split("/") - first = parts[0] - if first in ("+", "hi"): - return "positive" - if first in ("-", "lo", "int"): - return "negative" - return "variable" +Clause = phenotype.Clause def extract_signed_markers(expr: str) -> list[tuple[str, str]]: - """Return ``(MARKER_UPPER, sense)`` for every qualified token in *expr*. - - Sense is ``'positive'`` or ``'negative'``. Tokens with no qualifier and - group-level-only qualifiers are skipped (ambiguous without full parse). - The live/ gate prefix is ignored. - """ - try: - tokens = _tokenize(expr) - except Exception: # noqa: BLE001 - return [] - - results: list[tuple[str, str]] = [] - # Track the qualifier of the most recently closed group so we can apply it - # to unqualified members. Stack entries: qualifier string or None. - pending_group_qual: list[str | None] = [] - i = 0 - n = len(tokens) - - while i < n: - kind, text = tokens[i] - if kind == "WS" or kind == "|": - i += 1 - elif kind in ("(", "["): - pending_group_qual.append(None) - i += 1 - elif kind in (")", "]"): - i += 1 - # Peek: is the next WORD a standalone qualifier? - if i < n and tokens[i][0] == "WORD" and _is_qualifier(tokens[i][1]): - pending_group_qual.append(tokens[i][1]) - i += 1 - else: - pending_group_qual.append(None) - elif kind == "WORD": - if text == GATE: - i += 1 - continue - try: - marker, qual = _split_word(text) - except Exception: # noqa: BLE001 - i += 1 - continue - if qual: - sense = _qual_sense(qual) - elif pending_group_qual and pending_group_qual[-1]: - sense = _qual_sense(pending_group_qual[-1]) - else: - i += 1 - continue # truly unqualified — skip - if sense != "variable": - results.append((marker.upper(), sense)) - i += 1 - else: - i += 1 - - return results - - -# A required/ideal marker "clause" for score_cl_terms: either a plain -# (MARKER, sense) tuple (a single required condition) or a list of such -# tuples — an OR-group satisfied by *any one* alternative, not all. -Clause = tuple[str, str] | list[tuple[str, str]] + """Return literals for display; scoring must use the Boolean clauses.""" + return [ + literal + for clause in extract_marker_clauses(expr) + for literal in ([clause] if isinstance(clause, tuple) else clause) + ] def extract_marker_clauses(expr: str) -> list[Clause]: - """Tokenize *expr* into AND-joined clauses, modelling ``|`` as true OR. - - :func:`extract_signed_markers` flattens a ``|``-joined OR-group like - ``(CD193+|FceR1a+|HLA-DR-|CD303-)`` into four independently-**required** - markers — i.e. it silently turns "at least one of these" into "all of - these", which is wrong per MARKER_SYNTAX.md §1.4. That mistranslation - made scoring reject candidates that only need to satisfy one - alternative: ``CL:0000043`` (mature basophil) never scored as a match - for SOULCAP's Basophil profile, because CL doesn't assert *all four* - alternatives simultaneously — only some. - - This function fixes that for the common case: a bracket directly - containing ``|``-joined atoms that **each already carry their own - qualifier** (every real example in the current sheet looks like this) - is returned as one clause — a list of alternatives — instead of being - flattened. :func:`score_cl_terms` treats such a clause as satisfied if - *any* alternative matches, and contradicted only if *every* alternative - is actively contradicted. - - Scope: anything more complex — an unqualified member relying on a - group-level qualifier, a nested group, or a trailing qualifier negating - a compound AND-group (``[HLA-DR+ CD11chi]-``, MARKER_SYNTAX.md §1.6, - which needs De Morgan expansion) — falls back to flattening every leaf - as independently required, i.e. :func:`extract_signed_markers`'s - existing (imperfect but non-regressed) behaviour. - """ - try: - tokens = _tokenize(expr) - except Exception: # noqa: BLE001 - return [] - - # frames[d] holds items collected directly at nesting depth d (index 0 - # = top level). An item is ("leaf", marker, sense) or ("clause", alts). - frames: list[list[tuple]] = [[]] - saw_pipe: list[bool] = [False] - - i = 0 - n = len(tokens) - while i < n: - kind, text = tokens[i] - if kind == "WS": - i += 1 - elif kind == "|": - saw_pipe[-1] = True - i += 1 - elif kind in ("(", "["): - frames.append([]) - saw_pipe.append(False) - i += 1 - elif kind in (")", "]"): - if len(frames) <= 1: - # Unbalanced closing bracket with no matching open — nothing - # to pop; skip it (and any trailing qualifier) and keep the - # top-level frame intact, matching extract_signed_markers's - # leniency toward malformed input. - i += 1 - if i < n and tokens[i][0] == "WORD" and _is_qualifier(tokens[i][1]): - i += 1 - continue - items = frames.pop() - had_pipe = saw_pipe.pop() - i += 1 - group_qual = None - if i < n and tokens[i][0] == "WORD" and _is_qualifier(tokens[i][1]): - group_qual = tokens[i][1] - i += 1 - parent = frames[-1] - all_leaves = bool(items) and all(kind_ == "leaf" for kind_, *_ in items) - simple_group = group_qual is None or _qual_sense(group_qual) == "variable" - if had_pipe and all_leaves and simple_group: - parent.append(("clause", [(m, s) for _, m, s in items])) - else: - parent.extend(items) - elif kind == "WORD": - if text == GATE: - i += 1 - continue - try: - marker, qual = _split_word(text) - except Exception: # noqa: BLE001 - i += 1 - continue - if qual: - sense = _qual_sense(qual) - if sense != "variable": - frames[-1].append(("leaf", marker.upper(), sense)) - # else: truly unqualified — skip (matches extract_signed_markers) - i += 1 - else: - i += 1 - - # Unbalanced open brackets: flatten remaining frames into the top level. - while len(frames) > 1: - items = frames.pop() - frames[-1].extend(items) - - clauses: list[Clause] = [] - for kind_, *rest in frames[0]: - if kind_ == "leaf": - marker, sense = rest - clauses.append((marker, sense)) - else: - clauses.append(rest[0]) - return clauses + """Compile the shared AST, preserving alternatives and compound negation.""" + return phenotype.clauses(expr) def _eval_alternative( @@ -328,28 +210,24 @@ def _eval_alternative( absent: set[str], high: set[str], low: set[str], + intermediate: set[str] | None = None, ) -> tuple[str, str]: """Evaluate one (marker, sense) alternative against a CL term's axioms. Returns ``(status, display)`` where status is ``"matched"``, ``"contradicted"``, or ``"gap"``. """ - in_expressed = marker in expressed - in_absent = marker in absent - symbol = "+" if sense == "positive" else "-" + symbol = {"positive": "+", "negative": "-"}.get(sense, ":" + sense) tag = " (hi)" if marker in high else " (dim)" if marker in low else "" display = f"{marker}{symbol}{tag}" - if sense == "positive": - if in_expressed: - return "matched", display - if in_absent: - return "contradicted", display - return "gap", display - if in_absent: - return "matched", display - if in_expressed: - return "contradicted", display - return "gap", display + entry = { + "positive": expressed, + "negative": absent, + "high": high, + "low": low, + "intermediate": intermediate or set(), + } + return phenotype.evaluate(marker, sense, entry), display # --------------------------------------------------------------------------- # @@ -391,12 +269,22 @@ def score_cl_terms( the score, breaking ties toward biologically named matches. """ hints = name_hints or set() + resolver = next( + (entry["resolver"] for entry in cl_index.values() if "resolver" in entry), None + ) + if resolver is not None: + from soulcap_cl_mapping.marker_resolution import deduplicate + + seen: set = set() + required = deduplicate(required, resolver, seen) + ideal = deduplicate(ideal, resolver, seen) results = [] for cl_id, entry in cl_index.items(): pos = entry["positive"] high = entry.get("high", set()) low = entry.get("low", set()) - expressed = pos | high | low + intermediate = entry.get("intermediate", set()) + expressed = pos | high | low | intermediate absent = entry["negative"] score = 0 matched: list[str] = [] @@ -411,7 +299,7 @@ def score_cl_terms( for clause in markers: alternatives = [clause] if isinstance(clause, tuple) else clause statuses = [ - _eval_alternative(m, s, expressed, absent, high, low) + _eval_alternative(m, s, expressed, absent, high, low, intermediate) for m, s in alternatives ] matched_display = next( @@ -471,7 +359,9 @@ def score_cl_terms( def load_marker_combinations(path: Path) -> list[dict]: """Load the synced SOULCAP ``Marker Combinations`` tab (sheet columns).""" with path.open(encoding="utf-8", newline="") as fh: - return list(csv.DictReader(fh)) + rows = list(csv.DictReader(fh)) + index = registry.entity_index() + return [{**row, "subject_id": registry.row_id(row, index)} for row in rows] def score_marker_combinations_row( @@ -492,6 +382,8 @@ def score_marker_combinations_row( existing_cl_id = row.get("OLS CL identifier", "").strip() identity = { + "subject_id": registry.row_id(row), + "specimen": row.get("WB or PBMC", ""), "abbreviation": abbreviation, "full_name": full_name, "parent": parent, @@ -499,6 +391,16 @@ def score_marker_combinations_row( "existing_cl_id": existing_cl_id, } + for column in MARKER_COLUMNS: + try: + extract_marker_clauses(row.get(column, "")) + except MarkerSyntaxError as exc: + return { + **identity, + "candidates": [], + "note": f"invalid expression in {column}: {exc}", + } + required = extract_marker_clauses( row.get("Required exclusion", "") ) + extract_marker_clauses(row.get("Required phenotypic markers", "")) @@ -506,11 +408,24 @@ def score_marker_combinations_row( row.get("Ideal exclusion", "") ) + extract_marker_clauses(row.get("Ideal phenotypic markers", "")) - if not required and not ideal: + if not phenotype.has_qualified(required + ideal): return {**identity, "candidates": [], "note": "no qualified markers found"} + from soulcap_cl_mapping.candidate_index import lexical_candidates + hints = _hint_words(full_name, parent, abbreviation) - scored = score_cl_terms(cl_index, required, ideal, hints) + lexical = lexical_candidates(row, cl_index) + pool = { + k: v for k, v in cl_index.items() if not v.get("lexical_only") or k in lexical + } + scored = score_cl_terms(pool, required, ideal, hints) + for candidate in scored: + entry = cl_index[candidate["cl_id"]] + candidate["candidate_sources"] = ( + ["marker_axioms"] if not entry.get("lexical_only") else [] + ) + (["local_lexical"] if candidate["cl_id"] in lexical else []) + candidate["lexical_evidence"] = lexical.get(candidate["cl_id"]) + candidate["resolution_evidence"] = entry.get("resolution_evidence", []) return {**identity, "candidates": scored[:top_n], "note": ""} @@ -545,14 +460,18 @@ def batch_results_to_tsv_rows(results: list[dict]) -> list[dict]: tsv_rows: list[dict] = [] for r in results: identity = { - k: r[k] - for k in ( - "abbreviation", - "full_name", - "parent", - "type_of_match", - "existing_cl_id", - ) + "subject_id": r.get("subject_id", ""), + "specimen": r.get("specimen", ""), + **{ + k: r[k] + for k in ( + "abbreviation", + "full_name", + "parent", + "type_of_match", + "existing_cl_id", + ) + }, } if not r["candidates"]: tsv_rows.append( @@ -584,6 +503,11 @@ def batch_results_to_tsv_rows(results: list[dict]) -> list[dict]: "contradictions": ", ".join(cand["contradictions"]), "gaps": ", ".join(cand["gaps"]), "disqualified": "yes" if cand.get("disqualified") else "no", + "candidate_sources": json.dumps(cand.get("candidate_sources", [])), + "lexical_evidence": json.dumps(cand.get("lexical_evidence")), + "resolution_evidence": json.dumps( + cand.get("resolution_evidence", []) + ), "note": "", } ) @@ -648,6 +572,8 @@ def run_lexical_batch( continue identity = { + "subject_id": registry.row_id(row), + "specimen": row.get("WB or PBMC", ""), "abbreviation": abbreviation, "full_name": full_name, "parent": row.get("Parent", "").strip(), @@ -696,18 +622,38 @@ def merge_marker_and_lexical( survives both a marker-axiom check and an independent name-similarity check. """ - lexical_by_key = {r["abbreviation"]: r for r in lexical_results} + + def key(row: dict) -> str: + return registry.row_id( + { + "subject_id": row.get("subject_id", ""), + "Abbreviation": row["abbreviation"], + "Parent": row.get("parent", ""), + "WB or PBMC": row.get("specimen", ""), + } + ) + + lexical_by_key = {key(r): r for r in lexical_results} + if len(lexical_by_key) != len(lexical_results): + raise ValueError( + "Duplicate lexical row identities; provide distinct subject_id values" + ) merged = [] for m in marker_results: - lex = lexical_by_key.get(m["abbreviation"], {"candidates": [], "note": ""}) + lex = lexical_by_key.get(key(m), {"candidates": [], "note": ""}) marker_top = m["candidates"][0] if m["candidates"] else None lexical_top = lex["candidates"][0] if lex["candidates"] else None agreement = bool( - marker_top and lexical_top and marker_top["cl_id"] == lexical_top["cl_id"] + marker_top + and lexical_top + and not marker_top.get("disqualified") + and marker_top["cl_id"] == lexical_top["cl_id"] ) merged.append( { "abbreviation": m["abbreviation"], + "subject_id": key(m), + "specimen": m.get("specimen", ""), "full_name": m["full_name"], "parent": m["parent"], "type_of_match": m["type_of_match"], @@ -729,6 +675,8 @@ def merge_marker_and_lexical( AGREEMENT_TSV_FIELDS = [ + "subject_id", + "specimen", "abbreviation", "full_name", "parent", @@ -763,10 +711,7 @@ def write_agreement_tsv(path: Path, merged_rows: list[dict]) -> None: def _format_clause(clause: Clause) -> str: """Render a Clause for CLI display: ``MARKER+``/``-``, or ``(A+|B-)`` for an OR-group.""" - if isinstance(clause, tuple): - marker, sense = clause - return f"{marker}{'+' if sense == 'positive' else '-'}" - return "(" + "|".join(_format_clause(alt) for alt in clause) + ")" + return phenotype.display(clause) def format_result(rank: int, r: dict) -> str: @@ -877,6 +822,16 @@ def main(argv: list[str] | None = None) -> int: metavar="PATH", help=f"--lexical output TSV path (default: {DEFAULT_AGREEMENT_OUT}).", ) + parser.add_argument( + "--marker-map", + type=Path, + help="Enable conservative alias/PRO resolution using this registry CSV", + ) + parser.add_argument( + "--term-cache", + type=Path, + help="Add candidates from a local CL label/exact-synonym JSON cache", + ) args = parser.parse_args(argv) if args.batch is None and not any( @@ -903,7 +858,7 @@ def main(argv: list[str] | None = None) -> int: top_n = args.top if args.top is not None else DEFAULT_BATCH_TOP try: rows = load_tsv(args.tsv) - cl_index = build_cl_index(rows) + cl_index = build_cl_index(rows, args.marker_map, args.term_cache) combo_rows = load_marker_combinations(combos_path) results = run_batch( combo_rows, cl_index, top_n=top_n, ready_only=args.ready_only @@ -912,7 +867,7 @@ def main(argv: list[str] | None = None) -> int: unscored = sum(1 for r in results if not r["candidates"]) print( f"Scored {len(results)} SOULCAP cell types against " - f"{len(cl_index)} CL terms ({unscored} had no qualified markers)." + f"{len(cl_index)} CL terms ({unscored} unscored: invalid or no qualified markers)." ) print(f"Wrote {args.batch_out}") @@ -938,7 +893,18 @@ def main(argv: list[str] | None = None) -> int: try: rows = load_tsv(args.tsv) - cl_index = build_cl_index(rows) + cl_index = build_cl_index(rows, args.marker_map, args.term_cache) + if args.term_cache: + from soulcap_cl_mapping.candidate_index import lexical_candidates + + lexical = lexical_candidates( + {"Full Name": args.subset or args.parent}, cl_index + ) + cl_index = { + k: v + for k, v in cl_index.items() + if not v.get("lexical_only") or k in lexical + } required = extract_marker_clauses(args.req_excl) + extract_marker_clauses( args.req_pheno @@ -947,7 +913,7 @@ def main(argv: list[str] | None = None) -> int: args.ideal_pheno ) - if not required and not ideal: + if not phenotype.has_qualified(required + ideal): print("error: no qualified markers found in expressions.", file=sys.stderr) return 1 diff --git a/src/soulcap_cl_mapping/evaluation.py b/src/soulcap_cl_mapping/evaluation.py new file mode 100644 index 0000000..c5c04eb --- /dev/null +++ b/src/soulcap_cl_mapping/evaluation.py @@ -0,0 +1,521 @@ +"""Offline target-retrieval evaluation; proposal agreement is not accuracy.""" + +from __future__ import annotations + +import argparse +import csv +import hashlib +import json +import re +from collections import Counter, defaultdict +from datetime import datetime, timezone +from importlib.metadata import version +from pathlib import Path + +from soulcap_cl_mapping import candidate_index, cl_match, marker_resolution + +FIELDS = [ + "subject_id", + "acceptable_cl_ids", + "match_type", + "review_status", + "evidence_reference", +] +INPUTS = { + "source": "data/marker_combinations.csv", + "entities": "mappings/soulcap_entities.tsv", + "mappings": "mappings/curated_mappings.tsv", + "axioms": "reports/cl_pro_relationships.tsv", +} +MODULES = ( + "cl_match.py", + "phenotype.py", + "marker_syntax.py", + "registry.py", + "evaluation.py", + "audit.py", + "candidate_index.py", + "marker_resolution.py", +) +CONFIG = { + "ks": [1, 3, 5], + "ranking": "production order, including disqualified candidates", + "ties": "primary metrics use production order; bounds report tie sensitivity", + "denominator": "all cohort cases, including unscorable profiles and absent targets", +} + + +def digest(path: Path) -> str: + return hashlib.sha256(path.read_bytes()).hexdigest() + + +def metrics(cases: list[dict]) -> dict: + n = len(cases) + result = { + "cases": n, + "mrr": sum(1 / c["rank"] if c["rank"] else 0 for c in cases) / n if n else None, + "statuses": dict(Counter(c["status"] for c in cases)), + "cases_with_missing_targets": sum(bool(c["missing_targets"]) for c in cases), + "top1_disqualified": sum( + bool(c["candidates"] and c["candidates"][0]["disqualified"]) for c in cases + ), + } + for k in (1, 3, 5): + for suffix, field in [ + ("", "rank"), + ("_optimistic", "rank_best"), + ("_pessimistic", "rank_worst"), + ]: + hits = sum(c[field] is not None and c[field] <= k for c in cases) + result[f"hit_at_{k}{suffix}"] = hits / n if n else None + return result + + +def score_case(case: dict, source: dict | None, index: dict) -> dict: + result = { + **case, + "rank": None, + "rank_best": None, + "rank_worst": None, + "missing_targets": sorted(set(case["targets"]) - index.keys()), + "candidates": [], + "target_results": [], + "status": "missing_source", + "note": "", + } + if source is None: + return result + if source["profile_changed"]: + result.update( + status="profile_changed", + note="Review source profile drift and update the entity registry.", + ) + return result + scored = cl_match.score_marker_combinations_row( + {**source["profile"], "subject_id": case["subject_id"]}, index, top_n=len(index) + ) + candidates = scored["candidates"] + result["candidates"] = candidates[:5] + result["note"] = scored["note"] + if not candidates: + result["status"] = "invalid_profile" if source["errors"] else "no_candidates" + return result + for rank, candidate in enumerate(candidates, 1): + if candidate["cl_id"] not in case["targets"]: + continue + tie = [ + i + for i, c in enumerate(candidates, 1) + if (c["disqualified"], c["score"]) + == (candidate["disqualified"], candidate["score"]) + ] + acceptable_in_tie = sum( + candidates[i - 1]["cl_id"] in case["targets"] for i in tie + ) + result["target_results"].append( + { + **candidate, + "rank": rank, + "rank_best": min(tie), + "rank_worst": max(tie) - acceptable_in_tie + 1, + } + ) + targets = result["target_results"] + if not targets: + result["status"] = ( + "target_not_in_index" + if len(result["missing_targets"]) == len(case["targets"]) + else "target_not_retrieved" + ) + else: + best = targets[0] + result.update( + rank=best["rank"], + rank_best=best["rank_best"], + rank_worst=best["rank_worst"], + status="target_disqualified" + if best["disqualified"] + else "hit_at_5" + if best["rank"] <= 5 + else "below_top_5", + ) + return result + + +def compare(current: dict, baseline: dict) -> dict: + if baseline.get("schema_version") != 1 or not isinstance( + baseline.get("cases"), list + ): + raise ValueError("Unsupported or malformed evaluation baseline") + old = {} + for c in baseline["cases"]: + if not isinstance(c, dict) or not isinstance(c.get("targets"), list): + raise ValueError("Malformed baseline case") + if c.get("rank") is not None and (type(c["rank"]) is not int or c["rank"] < 1): + raise ValueError("Baseline rank must be a positive integer or null") + key = c["case_id"] + if key in old: + raise ValueError("Duplicate baseline case ID") + old[key] = c + differences = [k for k in ("inputs", "config") if baseline.get(k) != current[k]] + changes = [] + for c in current["cases"]: + previous = old.pop(c["case_id"], None) + if previous is None: + status = "added" + elif previous["targets"] != c["targets"]: + status = "changed_targets" + else: + before, after = previous["rank"] or float("inf"), c["rank"] or float("inf") + status = ( + "improved" + if after < before + else "regressed" + if after > before + else "unchanged" + ) + changes.append( + { + "case_id": c["case_id"], + "change": status, + "before_rank": previous["rank"] if previous else None, + "after_rank": c["rank"], + "before_status": previous.get("status") if previous else None, + "after_status": c["status"], + } + ) + changes += [ + { + "case_id": key, + "change": "removed", + "before_rank": c["rank"], + "after_rank": None, + } + for key, c in old.items() + ] + return { + "comparable": not differences, + "differences": differences, + "matcher_changed": baseline.get("matcher") != current["matcher"], + "changes": changes, + } + + +def evaluate( + root: Path, + benchmark: Path, + marker_map: Path | None = None, + term_cache: Path | None = None, +) -> dict: + from soulcap_cl_mapping import audit + + snapshot = audit.build_audit(root) + for name in INPUTS: + item = next(i for i in snapshot["inputs"] if i["name"] == name) + if item["status"] != "available": + raise ValueError(f"Required evaluation input unavailable: {name}") + sources = {} + for source in snapshot["sources"]: + sid = source["subject_id"] + if sid in sources or sid.startswith("unresolved:"): + raise ValueError("Duplicate or unresolved source identity") + sources[sid] = source + identities = audit.registry.read_table(root / INPUTS["entities"]) + known = {r["subject_id"] for r in identities} + if len(known) != len(identities) or "" in known: + raise ValueError("Duplicate or empty registered identity") + cases: dict[tuple, dict] = {} + with benchmark.open(encoding="utf-8-sig", newline="") as fh: + reader = csv.DictReader(fh, delimiter="\t") + if reader.fieldnames != FIELDS: + raise ValueError(f"Benchmark columns must be {FIELDS}") + for row in reader: + if None in row or any(v is None for v in row.values()): + raise ValueError("Malformed benchmark row") + sid, relation, review = ( + row["subject_id"], + row["match_type"], + row["review_status"], + ) + targets = row["acceptable_cl_ids"].split("|") + if ( + sid not in known + or relation not in ("Exact", "Broad", "Narrow", "Related") + or review not in ("reviewed", "provisional") + ): + raise ValueError( + "Invalid benchmark identity, relation, or review status" + ) + if len(set(targets)) != len(targets) or any( + not re.fullmatch(r"CL:\d{7}", t) for t in targets + ): + raise ValueError("Invalid or duplicate acceptable CL targets") + if review == "reviewed" and not row["evidence_reference"].strip(): + raise ValueError("Reviewed benchmark cases need an evidence reference") + key = (review, sid, relation) + if key in cases: + raise ValueError( + "Duplicate benchmark case; combine acceptable targets with |" + ) + cases[key] = dict( + case_id="/".join(key), + cohort=review, + subject_id=sid, + match_type=relation, + targets=sorted(targets), + evidence_reference=row["evidence_reference"], + ) + grouped: dict[tuple, list] = defaultdict(list) + seen = set() + for m in snapshot["mappings"]: + pair = (m["subject_id"], m["cl_id"]) + if ( + pair in seen + or m["subject_id"] not in known + or m["match_type"] not in ("Exact", "Broad", "Narrow", "Related") + or not re.fullmatch(r"CL:\d{7}", m["cl_id"]) + ): + raise ValueError( + "Duplicate or invalid proposal identity, relation, or target" + ) + seen.add(pair) + grouped[("provisional", m["subject_id"], m["match_type"])].append(m) + for key, proposals in grouped.items(): + if key not in cases: + cases[key] = dict( + case_id="/".join(key), + cohort="provisional", + subject_id=key[1], + match_type=key[2], + targets=sorted({m["cl_id"] for m in proposals}), + evidence_reference="mappings/curated_mappings.tsv", + uncertain=any(m["uncertain"] for m in proposals), + ) + index = cl_match.build_cl_index( + cl_match.load_tsv(root / INPUTS["axioms"]), marker_map, term_cache + ) + results = [ + score_case(c, sources.get(c["subject_id"]), index) + for _, c in sorted(cases.items()) + ] + inputs = {path: digest(root / path) for path in INPUTS.values()} + inputs["benchmark"] = digest(benchmark) + if marker_map: + inputs["marker_policy"] = digest(marker_resolution.policy_path(marker_map)) + for input_name, path in (("marker_map", marker_map), ("term_cache", term_cache)): + if path: + inputs[input_name] = digest(path) + matcher = { + "version": version("soulcap-cl-mapping"), + "source_hashes": { + name: digest(Path(__file__).with_name(name)) for name in MODULES + }, + } + return dict( + schema_version=1, + generated_utc=datetime.now(timezone.utc).isoformat(), + inputs=inputs, + benchmark_path=str(benchmark.resolve()), + matcher=matcher, + config={ + **CONFIG, + "marker_resolution": bool(marker_map), + "resolution_policy": "explicit_v1" if marker_map else "legacy", + "local_lexical": bool(term_cache), + "lexical_limit": 20, + "lexical_min_jaccard": 0.5, + }, + candidate_count=len(index), + marker_resolution_issues=candidate_index.marker_resolver(marker_map)["issues"] + if marker_map + else [], + cases=results, + metrics={ + cohort: metrics([c for c in results if c["cohort"] == cohort]) + for cohort in ("reviewed", "provisional") + }, + by_relation={ + f"{cohort}/{relation}": metrics( + [ + c + for c in results + if c["cohort"] == cohort and c["match_type"] == relation + ] + ) + for cohort in ("reviewed", "provisional") + for relation in ("Exact", "Broad", "Narrow", "Related") + }, + ) + + +def dashboard_evaluation(root: Path) -> dict: + path = root / "reports/matcher_evaluation.json" + if not path.exists(): + return {"status": "unavailable", "cases": [], "metrics": {}} + try: + data = json.loads(path.read_text(encoding="utf-8")) + if ( + data["schema_version"] != 1 + or not isinstance(data["cases"], list) + or not isinstance(data["metrics"], dict) + ): + raise ValueError("Invalid evaluation schema") + for case in data["cases"]: + if not isinstance(case, dict) or not isinstance(case.get("targets"), list): + raise ValueError("Invalid cached evaluation case") + if any( + not isinstance(case.get(k), str) + for k in ("subject_id", "cohort", "match_type", "status") + ): + raise ValueError("Missing cached evaluation case fields") + for cohort in ("reviewed", "provisional"): + m = data["metrics"][cohort] + if not isinstance(m, dict) or type(m.get("cases")) is not int: + raise ValueError("Invalid cached evaluation metrics") + for key in ("hit_at_1", "hit_at_3", "hit_at_5", "mrr"): + value = m[key] + if value is not None and ( + type(value) not in (int, float) or not 0 <= value <= 1 + ): + raise ValueError("Invalid cached evaluation rate") + changed = [ + p + for p in INPUTS.values() + if not (root / p).exists() or data["inputs"].get(p) != digest(root / p) + ] + benchmark = root / "mappings/matcher_benchmark.tsv" + if not benchmark.exists() or digest(benchmark) != data["inputs"].get( + "benchmark" + ): + changed.append("benchmark (default path; custom benchmarks not verified)") + for name in MODULES: + if data["matcher"]["source_hashes"].get(name) != digest( + Path(__file__).with_name(name) + ): + changed.append(name) + for key, local in ( + ("marker_map", "marker_mappings/marker_protein_gene.csv"), + ("marker_policy", "marker_mappings/marker_resolution.tsv"), + ("term_cache", "reports/cl_lexical_cache.json"), + ): + if key in data["inputs"] and ( + not (root / local).exists() + or digest(root / local) != data["inputs"][key] + ): + changed.append(key + " (default path; custom inputs unverified)") + return { + **data, + "status": "stale_or_unverified" if changed else "current_local_snapshot", + "differences": changed, + } + except (OSError, ValueError, KeyError, TypeError, AttributeError): + return {"status": "invalid", "cases": [], "metrics": {}} + + +def main(argv: list[str] | None = None) -> int: + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument( + "--root", type=Path, default=Path(__file__).resolve().parents[2] + ) + parser.add_argument("--benchmark", type=Path) + parser.add_argument("--out-dir", type=Path) + parser.add_argument("--baseline", type=Path) + parser.add_argument("--marker-map", type=Path) + parser.add_argument("--term-cache", type=Path) + args = parser.parse_args(argv) + root = args.root.resolve() + try: + data = evaluate( + root, + args.benchmark or root / "mappings/matcher_benchmark.tsv", + args.marker_map, + args.term_cache, + ) + if args.baseline: + data["comparison"] = compare( + data, json.loads(args.baseline.read_text(encoding="utf-8")) + ) + out = args.out_dir or root / "reports" + outputs = [out / f"matcher_evaluation.{ext}" for ext in ("json", "md", "tsv")] + protected = [args.benchmark or root / "mappings/matcher_benchmark.tsv"] + ( + [args.baseline] if args.baseline else [] + ) + protected += [p for p in (args.marker_map, args.term_cache) if p is not None] + if args.marker_map: + protected.append(marker_resolution.policy_path(args.marker_map)) + if any(p.resolve() == q.resolve() for p in outputs for q in protected): + raise ValueError( + "Output would overwrite benchmark or baseline; choose another --out-dir" + ) + out.mkdir(parents=True, exist_ok=True) + outputs[0].write_text(json.dumps(data, indent=2) + "\n", encoding="utf-8") + lines = [ + "# Matcher evaluation", + "", + "Target retrieval only; provisional agreement is not validated accuracy.", + "All cohort cases remain in denominators, including invalid profiles and absent targets.", + "Primary ranks retain production tie ordering and disqualified candidates. Bounds show tie sensitivity.", + "", + "## Metrics", + "", + "```json", + json.dumps(data["metrics"], indent=2), + "```", + "", + "## Relation breakdown", + "", + "```json", + json.dumps(data["by_relation"], indent=2), + "```", + ] + if "comparison" in data: + lines += [ + "", + "## Baseline comparison", + "", + "Input/config changes make comparisons non-equivalent.", + "", + "```json", + json.dumps(data["comparison"], indent=2), + "```", + ] + lines += [ + "", + "See matcher_evaluation.tsv for per-case failures and matcher_evaluation.json for full evidence and provenance.", + "", + ] + outputs[1].write_text("\n".join(lines), encoding="utf-8") + with outputs[2].open("w", encoding="utf-8", newline="") as fh: + fields = [ + "case_id", + "cohort", + "subject_id", + "match_type", + "targets", + "status", + "rank", + "rank_best", + "rank_worst", + "missing_targets", + "note", + "candidates", + "target_results", + ] + writer = csv.DictWriter( + fh, fieldnames=fields, delimiter="\t", extrasaction="ignore" + ) + writer.writeheader() + writer.writerows( + {k: json.dumps(v) if isinstance(v, list) else v for k, v in c.items()} + for c in data["cases"] + ) + print( + f"Wrote evaluation: {len(data['cases'])} cases; {data['metrics']['reviewed']['cases']} reviewed. Run soulcap-audit to refresh the dashboard." + ) + return 0 + except (OSError, ValueError, KeyError, TypeError, AttributeError) as exc: + parser.exit(1, f"Evaluation failed: {exc}\n") + + +if __name__ == "__main__": + raise SystemExit(main()) diff --git a/src/soulcap_cl_mapping/mapping_evidence.py b/src/soulcap_cl_mapping/mapping_evidence.py new file mode 100644 index 0000000..0798c75 --- /dev/null +++ b/src/soulcap_cl_mapping/mapping_evidence.py @@ -0,0 +1,141 @@ +"""Mapping-specific marker evidence, kept separate from curator assertions.""" + +from __future__ import annotations + +from soulcap_cl_mapping import cl_match, phenotype, registry +from soulcap_cl_mapping.marker_syntax import MARKER_COLUMNS, MarkerSyntaxError + + +def assess( + entry: dict, + profile: dict | None, + axiom_rows: list[dict], + *, + resolver: dict | None = None, +) -> dict: + result: dict = { + "status": "missing_profile", + "matched": [], + "contradictions": [], + "gaps": [], + "ideal_conflicts": [], + "untested_cl_markers": [], + "errors": [], + "lexical_evidence": entry.get("lexical_evidence", ""), + "literature_evidence": entry.get("literature_evidence", ""), + "curator_evidence": entry.get("curator_evidence", ""), + "review_status": entry.get("review_status", "needs_review"), + } + if resolver is not None: + result["resolution_mode"] = "explicit_marker_policy" + if profile is None: + return result + result["profile_sha256"] = registry.profile_signature(profile) + sheet_id = str(profile.get("OLS CL identifier", "")).strip() + result["sheet_cl_id"] = sheet_id + result["sheet_confirmation"] = ( + "agrees" + if sheet_id == entry["cl_id"] + else "differs" + if sheet_id + else "not_recorded" + ) + result["sheet_notes"] = str(profile.get("CL Mapping Notes", "")) + selected = [r for r in axiom_rows if r.get("cell") == entry["cl_id"]] + full = cl_match.build_cl_index(selected, resolver=resolver).get(entry["cl_id"], {}) + asserted = cl_match.build_cl_index( + [r for r in selected if r.get("asserted", "").lower() == "true"], + resolver=resolver, + ).get(entry["cl_id"], {}) + row_indexes = [ + (r, cl_match.build_cl_index([r], resolver=resolver).get(entry["cl_id"], {})) + for r in selected + ] + parsed: dict = {} + for column in MARKER_COLUMNS: + try: + parsed[column] = phenotype.clauses(profile.get(column, "")) + except MarkerSyntaxError as exc: + result["errors"].append(f"{column}: {exc}") + if result["errors"]: + result["status"] = "invalid_profile" + return result + if resolver is not None: + from soulcap_cl_mapping.marker_resolution import deduplicate + + seen: set = set() + for column in sorted(parsed, key=lambda c: not c.startswith("Required")): + parsed[column] = deduplicate(parsed[column], resolver, seen) + result["resolution_evidence"] = full.get("resolution_evidence", []) + tested: set[str] = set() + required_count = 0 + for column, clauses in parsed.items(): + required = column.startswith("Required") + for clause in clauses: + alternatives = [clause] if isinstance(clause, tuple) else clause + tested.update(m for m, _ in alternatives) + if not phenotype.has_qualified([clause]): + continue + states = [phenotype.evaluate(m, s, full) for m, s in alternatives] + record = {"column": column, "clause": phenotype.display(clause)} + if required: + required_count += 1 + if "matched" in states: + record["assertion"] = ( + "direct" + if any( + phenotype.evaluate(m, s, asserted) == "matched" + for m, s in alternatives + ) + else "inferred" + ) + record["axioms"] = [ + {k: r.get(k, "") for k in ("pr", "relation", "sense", "asserted")} + for r, r_index in row_indexes + if any( + phenotype.evaluate(m, s, r_index) == "matched" + for (m, s), st in zip(alternatives, states) + if st == "matched" + ) + ] + result["matched"].append(record) + elif all(st == "contradicted" for st in states): + result["contradictions" if required else "ideal_conflicts"].append( + record + ) + else: + result["gaps"].append(record) + if resolver is not None: + canonical = resolver["canonical"] + tested = {canonical.get(m, m) for m in tested} + result["untested_cl_markers"] = sorted( + { + resolver["canonical"].get(m, m) if resolver is not None else m + for sense in ("positive", "negative", "high", "low", "intermediate") + for m in full.get(sense, set()) + } + - tested + ) + required_matches = sum( + r["column"].startswith("Required") for r in result["matched"] + ) + if result["contradictions"]: + result["status"] = "contradicted" + elif required_count and required_matches == required_count: + result["status"] = "required_markers_supported" + elif result["matched"]: + result["status"] = "partial_support" + else: + result["status"] = "no_marker_support" + return result + + +def profile_index(rows: list[dict]) -> dict[str, dict]: + index = registry.entity_index() + result = {} + for row in rows: + subject = registry.row_id(row, index) + if subject in result: + raise ValueError(f"Duplicate source identity: {subject}") + result[subject] = row + return result diff --git a/src/soulcap_cl_mapping/mapping_export.py b/src/soulcap_cl_mapping/mapping_export.py new file mode 100644 index 0000000..d307cc7 --- /dev/null +++ b/src/soulcap_cl_mapping/mapping_export.py @@ -0,0 +1,283 @@ +"""Export registry decisions with evidence assessed against each source profile. + +Marker support does not establish biological equivalence. Numeric confidence +is omitted until calibrated; curator notes and legacy overrides are retained +as provenance, never used to bypass a marker conflict. +""" + +from __future__ import annotations + +import argparse +import csv +import hashlib +import json +import sys +from pathlib import Path + +import pandas as pd +from curies import Converter +from sssom.util import MappingSetDataFrame +from sssom.writers import write_table + +from soulcap_cl_mapping import cl_match, mapping_evidence, marker_resolution, registry + +REPO_ROOT = Path(__file__).resolve().parents[2] +DEFAULT_TSV = REPO_ROOT / "reports" / "cl_pro_relationships.tsv" +DEFAULT_OUT = REPO_ROOT / "reports" / "candidate_cl_mappings.sssom.tsv" +MAPPING_SET_ID = "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/blob/main/reports/candidate_cl_mappings.sssom.tsv" +LICENSE = "https://creativecommons.org/licenses/by/4.0/" +CURIE_MAP = { + "SOULCAP": "https://soulcap.org/cell_type/", + "CL": "http://purl.obolibrary.org/obo/CL_", + "skos": "http://www.w3.org/2004/02/skos/core#", + "semapv": "https://w3id.org/semapv/vocab/", +} +# Compatibility for existing callers; the TSV is the only decision source. +CURATED_MAPPINGS = registry.load_mappings() +_PREDICATE_BY_MATCH_TYPE = { + "Exact": "skos:exactMatch", + "Broad": "skos:broadMatch", + "Narrow": "skos:narrowMatch", + "Related": "skos:relatedMatch", +} + + +def load_assertion_status(tsv_path: Path = DEFAULT_TSV) -> dict[str, bool]: + """Legacy term inventory, not mapping evidence. Retained for API callers.""" + status: dict[str, bool] = {} + for row in registry.read_table(tsv_path): + if row.get("cell"): + status[row["cell"]] = ( + status.get(row["cell"], False) + or row.get("asserted", "").lower() == "true" + ) + return status + + +def classify_evidence(cl_id: str, assertion_status: dict[str, bool]) -> str: + """Legacy term inventory classifier; never used to assign mapping support.""" + if cl_id not in assertion_status: + return "no_marker_axiom" + return "confirmed" if assertion_status[cl_id] else "inferred_only" + + +def build_mapping_rows( + curated: list[dict], + assertion_status: dict[str, bool] | None = None, + *, + profiles: dict[str, dict] | None = None, + axiom_rows: list[dict] | None = None, + resolver: dict | None = None, +) -> list[dict]: + """Build proposed mappings. A term-wide assertion flag cannot confer support.""" + objects: dict[str, set[str]] = {} + subjects: dict[str, set[str]] = {} + for entry in curated: + sid = entry["subject_id"] + objects.setdefault(entry["cl_id"], set()).add(sid) + subjects.setdefault(sid, set()).add(entry["cl_id"]) + rows = [] + for entry in curated: + sid = entry["subject_id"] + evidence = mapping_evidence.assess( + entry, (profiles or {}).get(sid), axiom_rows or [], resolver=resolver + ) + comment = json.dumps( + { + "status": "proposal", + "marker_evidence": evidence, + "uncertain": bool(entry.get("uncertain")), + "note": entry.get("note", ""), + "legacy_evidence_override": entry.get("evidence_override", ""), + "legacy_subject_id": entry.get("legacy_subject_id", ""), + "evidence_source": entry.get("evidence_source", ""), + }, + ensure_ascii=False, + sort_keys=True, + ) + cardinality = ( + ("n" if len(objects[entry["cl_id"]]) > 1 else "1") + + ":" + + ("n" if len(subjects[sid]) > 1 else "1") + ) + rows.append( + { + "subject_id": sid, + "subject_label": entry["subject_label"], + "predicate_id": _PREDICATE_BY_MATCH_TYPE[entry["match_type"]], + "object_id": entry["cl_id"], + "object_label": entry["cl_label"], + "mapping_justification": "semapv:ManualMappingCuration", + "mapping_cardinality": cardinality, + "comment": comment, + "mapping_tool": "soulcap-sssom", + } + ) + return rows + + +def write_sssom(path: Path, rows: list[dict]) -> None: + msdf = MappingSetDataFrame( + df=pd.DataFrame(rows), + converter=Converter.from_prefix_map(CURIE_MAP), + metadata={"mapping_set_id": MAPPING_SET_ID, "license": LICENSE}, + ) + path.parent.mkdir(parents=True, exist_ok=True) + with path.open("w", encoding="utf-8", newline="") as fh: + write_table(msdf, fh) + + +def write_review(path: Path, rows: list[dict]) -> None: + """Generate a readable decision view from exactly the same export rows.""" + + def esc(value: str) -> str: + return value.replace("|", "\\|").replace("\n", " ") + + lines = [ + "# Candidate CL mappings", + "", + "Generated from mappings/curated_mappings.tsv by soulcap-sssom.", + "All entries are proposals. Marker compatibility alone does not establish equivalence.", + "Evidence uses CD synonym tokens in the local CL-PRO snapshot; species, tissue, and unrepresented markers still require review.", + "Numeric confidence is omitted pending calibration. Blank evidence fields mean evidence has not been captured in the registry.", + "Original detailed rationale: [narrative](candidate_cl_mappings_narrative.md).", + "", + "| SOULCAP ID | Cell type | CL ID | Relation | Marker evidence | Review |", + "|---|---|---|---|---|---|", + ] + for row in rows: + ev = json.loads(row["comment"])["marker_evidence"] + lines.append( + "| " + + " | ".join( + esc(str(v)) + for v in [ + row["subject_id"], + row["subject_label"], + row["object_id"], + row["predicate_id"], + ev["status"], + ev["review_status"], + ] + ) + + " |" + ) + for row in rows: + details = json.loads(row["comment"]) + ev = details["marker_evidence"] + lines.extend( + [ + "", + "## " + row["subject_id"] + " — " + row["subject_label"], + "", + f"Proposed {row['predicate_id']} to {row['object_id']} ({row['object_label']}).", + "", + details["note"], + "", + "Uncertain proposal: " + + ("yes" if details["uncertain"] else "no") + + ".", + "Marker evidence: " + ev["status"] + ".", + "Curator evidence: " + (ev["curator_evidence"] or "not recorded") + ".", + "Current sheet mapping: " + + ev.get("sheet_confirmation", "missing_profile") + + " " + + ev.get("sheet_cl_id", "") + + ".", + "Lexical evidence: " + (ev["lexical_evidence"] or "not recorded") + ".", + "Literature evidence: " + + ( + ev["literature_evidence"] + or "see legacy narrative; no structured evidence recorded" + ) + + ".", + "", + ] + ) + for field in ( + "matched", + "contradictions", + "gaps", + "ideal_conflicts", + "errors", + "untested_cl_markers", + ): + if ev[field]: + values = [ + f"{item['column']}: {item['clause']}" + + (f" [{item['assertion']}]" if "assertion" in item else "") + if isinstance(item, dict) + else str(item) + for item in ev[field] + ] + lines.extend( + [ + field.replace("_", " ").capitalize() + + ": " + + "; ".join(values) + + ".", + "", + ] + ) + path.parent.mkdir(parents=True, exist_ok=True) + path.write_text("\n".join(lines) + "\n", encoding="utf-8") + + +def main(argv: list[str] | None = None) -> int: + parser = argparse.ArgumentParser(prog="soulcap-sssom", description=__doc__) + parser.add_argument("--tsv", type=Path, default=DEFAULT_TSV) + parser.add_argument("--out", type=Path, default=DEFAULT_OUT) + parser.add_argument("--mappings", type=Path, default=registry.DEFAULT_MAPPINGS) + parser.add_argument( + "--source", type=Path, default=cl_match.DEFAULT_MARKER_COMBINATIONS + ) + parser.add_argument("--review-out", type=Path) + parser.add_argument( + "--marker-map", + type=Path, + help="Opt-in shared resolver; requires sibling marker_resolution.tsv and a non-default --out", + ) + args = parser.parse_args(argv) + try: + if args.marker_map and args.out == DEFAULT_OUT: + raise ValueError( + "Enhanced export requires a separate --out; preserve the default legacy export until reviewed" + ) + resolver = marker_resolution.load(args.marker_map) if args.marker_map else None + curated = registry.load_mappings(args.mappings) + with args.source.open(encoding="utf-8-sig", newline="") as fh: + profiles = mapping_evidence.profile_index(list(csv.DictReader(fh))) + rows = build_mapping_rows( + curated, + profiles=profiles, + axiom_rows=registry.read_table(args.tsv), + resolver=resolver, + ) + write_sssom(args.out, rows) + review = args.review_out or args.out.with_suffix(".md") + if args.out == DEFAULT_OUT and args.review_out is None: + review = REPO_ROOT / "reports" / "candidate_cl_mappings.md" + write_review(review, rows) + manifest = { + str( + p.relative_to(REPO_ROOT) if p.is_relative_to(REPO_ROOT) else p + ): hashlib.sha256(p.read_bytes()).hexdigest() + for p in [args.source, args.tsv, args.mappings, registry.DEFAULT_IDENTITIES] + + ( + [args.marker_map, marker_resolution.policy_path(args.marker_map)] + if args.marker_map + else [] + ) + } + args.out.with_suffix(".provenance.json").write_text( + json.dumps(manifest, indent=2, sort_keys=True) + "\n", encoding="utf-8" + ) + except Exception as exc: + print(f"error: {exc}", file=sys.stderr) + return 1 + print(f"Wrote {len(rows)} proposed mappings to {args.out}; review: {review}") + return 0 + + +if __name__ == "__main__": + raise SystemExit(main()) diff --git a/src/soulcap_cl_mapping/marker_resolution.py b/src/soulcap_cl_mapping/marker_resolution.py new file mode 100644 index 0000000..c3ade82 --- /dev/null +++ b/src/soulcap_cl_mapping/marker_resolution.py @@ -0,0 +1,239 @@ +"""Shared, explicit marker-resolution policy; no protein hierarchy inference.""" + +from __future__ import annotations + +import csv +import hashlib +import json +import re +from collections import defaultdict +from pathlib import Path + +from soulcap_cl_mapping import phenotype + +REPRESENTATIONS = { + "single_protein", + "protein_family", + "complex", + "reagent_gate", + "unresolved", +} +POLICY_FIELDS = [ + "marker_token", + "representation", + "protein_resolution", + "rationale", + "source_ref", + "registry_sha256", +] + +# Evidence-scoped exceptions, NOT molecular-identity mappings. PR:000025402 +# denotes the whole CD8 coreceptor, unlike the CD8-alpha registry entry. +# Require an explicit same-token label/exact synonym and this surface relation; +# do not expand aliases, infer components, or convert generic has-part to surface. +# Review and frozen-source provenance: reports/regression-followup/README.md. +REVIEWED_SURFACE_ASSERTIONS = { + ("CD8", "PR:000025402", "RO:0002104", "positive"): { + "rule_id": "whole_cd8_surface_positive_v1", + "source_ref": "http://purl.obolibrary.org/obo/PR_000025402", + "review_ref": "reports/regression-followup/README.md#scoped-correction", + "interpretation": "marker_assertion_not_molecular_equivalence", + } +} + + +def policy_path(marker_map: Path) -> Path: + return marker_map.with_name("marker_resolution.tsv") + + +def signature(rows: list[dict]) -> str: + serialized = sorted(json.dumps(r, sort_keys=True, ensure_ascii=True) for r in rows) + return hashlib.sha256("\n".join(serialized).encode()).hexdigest() + + +def load(path: Path) -> dict: + with path.open(encoding="utf-8-sig", newline="") as fh: + reader = csv.DictReader(fh) + if not {"marker_token", "marker_synonyms", "pro_id", "notes"} <= set( + reader.fieldnames or [] + ): + raise ValueError("Marker registry missing required columns") + rows = list(reader) + groups: dict[str, list] = defaultdict(list) + owners: dict[str, set] = defaultdict(set) + for row in rows: + if None in row or any(v is None for v in row.values()): + raise ValueError("Malformed marker registry row") + token = row["marker_token"].strip().upper() + if not token: + raise ValueError("Empty marker token") + if row["pro_id"] and not re.fullmatch(r"PR:[A-Za-z0-9]+", row["pro_id"]): + raise ValueError("Invalid PRO identifier") + groups[token].append(row) + for alias in [token, *row["marker_synonyms"].split("|")]: + if alias.strip(): + owners[alias.strip().upper()].add(token) + policies = {} + with policy_path(path).open(encoding="utf-8-sig", newline="") as fh: + reader = csv.DictReader(fh, delimiter="\t") + if reader.fieldnames != POLICY_FIELDS: + raise ValueError("Invalid marker resolution policy columns") + for row in reader: + if None in row or any(v is None for v in row.values()): + raise ValueError("Malformed resolution policy row") + token = row["marker_token"].strip().upper() + if token in policies or token not in groups: + raise ValueError("Duplicate or unknown policy marker") + if row["representation"] not in REPRESENTATIONS or row[ + "protein_resolution" + ] not in ("allow", "withhold"): + raise ValueError("Invalid representation or protein resolution policy") + if not row["rationale"].strip() or not row["source_ref"].strip(): + raise ValueError("Policy needs rationale and source reference") + if row["registry_sha256"] != signature(groups[token]): + raise ValueError( + f"Stale marker policy: {token}; review registry changes" + ) + ids = {r["pro_id"] for r in groups[token]} + if row["protein_resolution"] == "allow" and ( + row["representation"] != "single_protein" or len(ids) != 1 or "" in ids + ): + raise ValueError( + "Only an explicitly single-protein marker with one exact PRO ID may allow protein resolution" + ) + policies[token] = row + if policies.keys() != groups.keys(): + raise ValueError("Every registry marker needs an explicit resolution policy") + + # Exact identity keys merge duplicate alias owners only when their policies + # authorize the same PRO ID. No transitive alias bridge across different IDs. + identity = { + t: "protein:" + groups[t][0]["pro_id"] + if p["protein_resolution"] == "allow" + else "marker:" + t + for t, p in policies.items() + } + names_by_identity: dict[str, set] = defaultdict(set) + conflicts = set() + issues = [] + for name, tokens in owners.items(): + identities = {identity[t] for t in tokens} + if len(identities) == 1: + names_by_identity[next(iter(identities))].add(name) + else: + conflicts.add(name) + issues.append( + {"marker": name, "reason": "ambiguous_alias", "owners": sorted(tokens)} + ) + aliases, proteins, canonical = {}, defaultdict(set), {} + for token, p in policies.items(): + names = names_by_identity[identity[token]] + aliases[token] = names + if names: + for name in names: + canonical[name] = min(names) + if p["protein_resolution"] == "allow": + proteins[groups[token][0]["pro_id"]].update(names) + else: + issues.append( + { + "marker": token, + "reason": "policy_withheld", + "representation": p["representation"], + "rationale": p["rationale"], + } + ) + return dict( + aliases=aliases, + owners=owners, + proteins=proteins, + canonical=canonical, + conflicts=conflicts, + issues=issues, + policies=policies, + groups=dict(groups), + ) + + +def expand_axiom(row: dict, resolver: dict) -> tuple[set[str], list[dict]]: + tokens: set[str] = set() + evidence = [] + for raw in row.get("cd_synonym", "").split(";"): + match = re.fullmatch(r"\s*([^()]+?)(?:\s*\(([^()]+)\))?\s*", raw) + if not match or (match[2] and match[2].lower() not in ("label", "exact")): + continue + name = match[1].strip().upper() + if name in resolver["conflicts"]: + continue + owners = resolver["owners"].get(name, set()) + expanded = resolver["aliases"][next(iter(owners))] if owners else {name} + # An exact-token assertion on a different PRO ID must not bypass policy. + # Withheld representations may only use explicit same-token evidence, + # never inherit another marker's component assertion through an alias. + if owners and row.get("pr"): + allowed_ids = { + r["pro_id"] for owner in owners for r in resolver["groups"][owner] + } + if any( + resolver["policies"][o]["protein_resolution"] == "withhold" + for o in owners + ): + rule = REVIEWED_SURFACE_ASSERTIONS.get( + (name, row["pr"], row.get("relation", ""), row.get("sense", "")) + ) + if rule and match[2] and match[2].lower() in ("label", "exact"): + tokens.add(name) + evidence.append( + { + "via": "reviewed_surface_assertion", + "source_token": name, + "tokens": [name], + **rule, + } + ) + continue + if row["pr"] not in allowed_ids: + continue + tokens.update(expanded) + evidence.append( + {"via": "exact_alias", "source_token": name, "tokens": sorted(expanded)} + ) + protein_tokens = resolver["proteins"].get(row.get("pr", ""), set()) + tokens.update(protein_tokens) + if protein_tokens: + evidence.append( + {"via": "pro_id", "pr": row["pr"], "tokens": sorted(protein_tokens)} + ) + return tokens, evidence + + +def clause_key(clause: phenotype.Clause, resolver: dict) -> tuple: + literals = [clause] if isinstance(clause, tuple) else clause + return tuple( + sorted( + {(resolver["canonical"].get(m.upper(), m.upper()), s) for m, s in literals} + ) + ) + + +def deduplicate( + clauses: list[phenotype.Clause], resolver: dict, seen: set | None = None +) -> list[phenotype.Clause]: + """Count one identical semantic clause once, preserving signs and OR structure.""" + seen = set() if seen is None else seen + result = [] + for clause in clauses: + key = clause_key(clause, resolver) + if key not in seen: + seen.add(key) + # Keep the first input spelling for readable evidence; remove only + # duplicate alternatives, not distinct constraints or contradictions. + literals = [clause] if isinstance(clause, tuple) else clause + unique: dict[tuple[str, str], tuple[str, str]] = {} + for m, s in literals: + unique.setdefault( + (resolver["canonical"].get(m.upper(), m.upper()), s), (m, s) + ) + values = list(unique.values()) + result.append(values[0] if len(values) == 1 else values) + return result diff --git a/src/soulcap_cl_mapping/marker_syntax.py b/src/soulcap_cl_mapping/marker_syntax.py index 8d4ec01..0003412 100644 --- a/src/soulcap_cl_mapping/marker_syntax.py +++ b/src/soulcap_cl_mapping/marker_syntax.py @@ -2,8 +2,8 @@ This is a direct implementation of the EBNF in MARKER_SYNTAX.md §2, including the hyphen/plus lexical-disambiguation rule of §2.1. It is a recursive-descent -parser used purely to *validate* marker strings (it does not build an AST for -downstream use — that can come later). +parser producing an immutable AST shared by validation, token extraction, +and downstream matching. Public API: validate_expression(expr) -> str | None # error message, or None if valid @@ -16,6 +16,7 @@ from __future__ import annotations import re +from dataclasses import dataclass from pathlib import Path import pandas as pd @@ -93,6 +94,21 @@ def _is_qualifier(text: str) -> bool: # --------------------------------------------------------------------------- # # Parser # --------------------------------------------------------------------------- # +@dataclass(frozen=True) +class Expression: + """Immutable phenotype syntax tree; qualifiers retain all original levels.""" + + operator: str + children: tuple[Expression, ...] = () + marker: str = "" + qualifier: str = "" + + def markers(self) -> set[str]: + if self.operator == "atom": + return {self.marker} + return {m for child in self.children for m in child.markers()} + + class _Parser: def __init__(self, tokens: list[tuple[str, str]]): self.toks = tokens @@ -110,7 +126,9 @@ def _at_end(self) -> bool: return self.i >= len(self.toks) # ---- grammar ---------------------------------------------------------- # - def parse_expression(self) -> None: + def parse_expression(self) -> Expression: + if self._peek()[0] == "WS": + self._advance() kind, text = self._peek() if kind == "WORD" and text == GATE: # optional live/ gate self._advance() @@ -120,42 +138,45 @@ def parse_expression(self) -> None: self._advance() if self._at_end(): raise MarkerSyntaxError("empty expression") - self._parse_and_list_top() + result = self._parse_and_list_top() if not self._at_end(): _, text = self._peek() raise MarkerSyntaxError(f"unexpected trailing {text!r}") + return result - def _parse_and_list_top(self) -> None: - self._parse_term() + def _parse_and_list_top(self) -> Expression: + children = [self._parse_term()] while True: kind, text = self._peek() if kind == "WS": self._advance() if self._at_end(): # trailing whitespace break - self._parse_term() + children.append(self._parse_term()) elif self._at_end(): break elif kind == "|": raise MarkerSyntaxError("top-level '|' must be inside a group") else: raise MarkerSyntaxError(f"missing space before {text!r}") + return Expression("and", tuple(children)) - def _parse_term(self) -> None: + def _parse_term(self) -> Expression: kind, text = self._peek() if kind in ("(", "["): - self._parse_group() + return self._parse_group() elif kind == "WORD": self._advance() assert text is not None - _split_word(text) # validates marker + qualifier + marker, qualifier = _split_word(text) + return Expression("atom", marker=marker, qualifier=qualifier) else: raise MarkerSyntaxError(f"expected marker or group, found {text!r}") - def _parse_group(self) -> None: + def _parse_group(self) -> Expression: open_kind, _ = self._advance() close = ")" if open_kind == "(" else "]" - self._parse_inner(close) + inner = self._parse_inner(close) kind, _ = self._peek() if kind != close: raise MarkerSyntaxError(f"missing {close!r} to close {open_kind!r}") @@ -165,16 +186,18 @@ def _parse_group(self) -> None: kind, text = self._peek() if kind == "WORD" and text is not None and _is_qualifier(text): self._advance() + return Expression("group", (inner,), qualifier=text) + return inner - def _parse_inner(self, close: str) -> None: + def _parse_inner(self, close: str) -> Expression: if self._peek()[0] == "WS": self._advance() - self._parse_term() + children = [self._parse_term()] sep: str | None = None # '|' or 'WS' — a group is or_list XOR and_list while True: kind, text = self._peek() if kind == close: - return + return Expression("or" if sep == "|" else "and", tuple(children)) if kind == "|": if sep == "WS": raise MarkerSyntaxError("mixed '|' and space in a group") @@ -182,15 +205,15 @@ def _parse_inner(self, close: str) -> None: self._advance() if self._peek()[0] == "WS": self._advance() - self._parse_term() + children.append(self._parse_term()) elif kind == "WS": self._advance() if self._peek()[0] == close: # trailing whitespace - return + return Expression("or" if sep == "|" else "and", tuple(children)) if sep == "|": raise MarkerSyntaxError("mixed '|' and space in a group") sep = "WS" - self._parse_term() + children.append(self._parse_term()) elif kind is None: raise MarkerSyntaxError(f"missing {close!r}") else: @@ -200,13 +223,18 @@ def _parse_inner(self, close: str) -> None: # --------------------------------------------------------------------------- # # Public API # --------------------------------------------------------------------------- # +def parse_expression(expr: str) -> Expression: + """Parse a complete expression, raising on any malformed input.""" + return _Parser(_tokenize(expr)).parse_expression() + + def validate_expression(expr: str) -> str | None: """Return an error message if ``expr`` is invalid, else ``None``.""" tokens = _tokenize(expr) if not tokens or all(k == "WS" for k, _ in tokens): return "empty expression" try: - _Parser(tokens).parse_expression() + parse_expression(expr) except MarkerSyntaxError as exc: return str(exc) return None @@ -229,7 +257,9 @@ def _scan(path: str | Path) -> tuple[list[dict], int]: failures.append( { "row": row_num + 2, # +1 header, +1 for 1-based - "subset": str(row.get("Subset name", "")).strip(), + "subset": str( + row.get("Subset name", row.get("Abbreviation", "")) + ).strip(), "column": col, "value": str(value).strip(), "error": error, @@ -338,21 +368,9 @@ def extract_markers(expr: str) -> set[str]: set for empty or invalid expressions — never raises. """ try: - tokens = _tokenize(expr) - except Exception: # noqa: BLE001 + return parse_expression(expr).markers() + except MarkerSyntaxError: return set() - markers: set[str] = set() - for kind, text in tokens: - if kind != "WORD": - continue - if text == GATE or _is_qualifier(text): - continue - try: - marker, _ = _split_word(text) - markers.add(marker) - except MarkerSyntaxError: - continue - return markers def extract_markers_from_csv(path: str | Path) -> list[dict]: @@ -365,11 +383,11 @@ def extract_markers_from_csv(path: str | Path) -> list[dict]: """ df = pd.read_csv(path) cols = [c for c in MARKER_COLUMNS if c in df.columns] - has_subset = "Subset name" in df.columns + subset_column = "Subset name" if "Subset name" in df.columns else "Abbreviation" token_info: dict[str, dict[str, set]] = {} for _, row in df.iterrows(): - subset = str(row["Subset name"]).strip() if has_subset else "" + subset = str(row.get(subset_column, "")).strip() for col in cols: value = row[col] if pd.isna(value): @@ -422,6 +440,12 @@ def tokens_main(argv: list[str] | None = None) -> int: print(f"error: {args.csv} not found — run `soulcap-sync` first.") return 2 + failures = validate_csv(args.csv) + if failures: + print( + f"error: {len(failures)} invalid marker cell(s); fix source expressions before regenerating tokens." + ) + return 1 records = extract_markers_from_csv(args.csv) args.out.parent.mkdir(parents=True, exist_ok=True) pd.DataFrame(records).to_csv(args.out, index=False) diff --git a/src/soulcap_cl_mapping/phenotype.py b/src/soulcap_cl_mapping/phenotype.py new file mode 100644 index 0000000..e67c709 --- /dev/null +++ b/src/soulcap_cl_mapping/phenotype.py @@ -0,0 +1,110 @@ +"""Compile phenotype ASTs into bounded CNF and evaluate open-world evidence. + +Unknown CL assertions stay unknown, including under negation. Positive means +expressed at an unspecified level; it cannot prove a high/low requirement. +The documented special qualifier +/- means low or absent. +""" + +from __future__ import annotations + +from soulcap_cl_mapping.marker_syntax import ( + Expression, + MarkerSyntaxError, + parse_expression, +) + +Literal = tuple[str, str] +Clause = Literal | list[Literal] +LEVELS = { + "+": "positive", + "-": "negative", + "hi": "high", + "lo": "low", + "int": "intermediate", +} +MAX_CLAUSES = 256 + + +def _cnf(node: Expression, negate: bool = False) -> list[list[Literal]]: + if node.operator == "atom": + if not node.qualifier: + return [[(node.marker.upper(), "unknown")]] + levels = ["lo", "-"] if node.qualifier == "+/-" else node.qualifier.split("/") + atoms = [ + (node.marker.upper(), ("not:" if negate else "") + LEVELS[q]) + for q in levels + ] + return [[a] for a in atoms] if negate else [atoms] + if node.operator == "group": + if node.qualifier not in ("+", "-"): + raise MarkerSyntaxError( + "group expression levels need clarification; only group + and - can be scored" + ) + return _cnf(node.children[0], negate ^ (node.qualifier == "-")) + is_and = (node.operator == "and") != negate + parts = [_cnf(child, negate) for child in node.children] + if is_and: + result = [clause for part in parts for clause in part] + else: + result = [[]] + for part in parts: + if len(result) * len(part) > MAX_CLAUSES: + raise MarkerSyntaxError("expression exceeds Boolean expansion limit") + result = [list(dict.fromkeys(a + b)) for a in result for b in part] + if len(result) > MAX_CLAUSES: + raise MarkerSyntaxError("expression exceeds Boolean expansion limit") + return result + + +def clauses(expr: str) -> list[Clause]: + if not expr.strip(): + return [] + return [ + part[0] if len(part) == 1 else part for part in _cnf(parse_expression(expr)) + ] + + +def evaluate(marker: str, sense: str, entry: dict) -> str: + """Return matched, contradicted, or gap without treating absence as negation.""" + if sense.startswith("not:"): + return {"matched": "contradicted", "contradicted": "matched", "gap": "gap"}[ + evaluate(marker, sense[4:], entry) + ] + if sense == "unknown": + return "gap" + levels = { + level + for level in ("positive", "negative", "high", "low", "intermediate") + if marker in entry.get(level, set()) + } + if ( + not levels + or ("negative" in levels and len(levels) > 1) + or len(levels - {"positive"}) > 1 + ): + return "gap" + if sense == "positive": + return "contradicted" if levels == {"negative"} else "matched" + if sense == "negative": + return "matched" if levels == {"negative"} else "contradicted" + if sense in levels: + return "matched" + if levels == {"positive"}: + return "gap" + return "contradicted" + + +def has_qualified(clauses: list[Clause]) -> bool: + """Whether at least one literal has a defined expression qualifier.""" + return any( + s.removeprefix("not:") != "unknown" + for clause in clauses + for _, s in ([clause] if isinstance(clause, tuple) else clause) + ) + + +def display(clause: Clause) -> str: + if isinstance(clause, list): + return "(" + " OR ".join(display(a) for a in clause) + ")" + marker, sense = clause + return f"{marker}:{sense}" diff --git a/src/soulcap_cl_mapping/registry.py b/src/soulcap_cl_mapping/registry.py new file mode 100644 index 0000000..5c742bc --- /dev/null +++ b/src/soulcap_cl_mapping/registry.py @@ -0,0 +1,78 @@ +"""Persistent local SOULCAP identifiers and reviewed mapping decisions. + +Identifiers are assigned once in the tracked registry. Sheet labels are lookup +aliases, not identifiers; renames require an explicit registry alias update. +""" + +from __future__ import annotations + +import csv +import hashlib +from pathlib import Path + +from soulcap_cl_mapping.marker_syntax import MARKER_COLUMNS + +ROOT = Path(__file__).resolve().parents[2] +REGISTRY_DIR = ROOT / "mappings" +if not REGISTRY_DIR.exists(): + REGISTRY_DIR = Path(__file__).resolve().parent / "_registry" +DEFAULT_IDENTITIES = REGISTRY_DIR / "soulcap_entities.tsv" +DEFAULT_MAPPINGS = REGISTRY_DIR / "curated_mappings.tsv" +IDENTITY_COLUMNS = ("Abbreviation", "Parent", "WB or PBMC") + + +def read_table(path: Path) -> list[dict]: + with path.open(encoding="utf-8-sig", newline="") as fh: + return list(csv.DictReader(fh, delimiter="\t")) + + +def identity_key(row: dict) -> tuple[str, ...]: + return tuple(str(row.get(k, "")).strip() for k in IDENTITY_COLUMNS) + + +def profile_signature(row: dict) -> str: + value = "\n".join(str(row.get(k, "")).strip() for k in MARKER_COLUMNS) + return hashlib.sha256(value.encode()).hexdigest() + + +def entity_index(path: Path = DEFAULT_IDENTITIES) -> dict[tuple[str, ...], str]: + result: dict[tuple[str, ...], str] = {} + ids: set[str] = set() + for row in read_table(path): + key = (*identity_key(row), row["profile_signature"]) + if key in result or row["subject_id"] in ids: + raise ValueError("Duplicate entity identity or subject ID in registry") + result[key] = row["subject_id"] + ids.add(row["subject_id"]) + return result + + +def row_id(row: dict, index: dict[tuple[str, ...], str] | None = None) -> str: + if row.get("subject_id"): + return str(row["subject_id"]) + key = identity_key(row) + index = entity_index() if index is None else index + candidates = {k: v for k, v in index.items() if k[:3] == key} + if len(candidates) == 1: + return next(iter(candidates.values())) + exact = (*key, profile_signature(row)) + if exact in candidates: + return candidates[exact] + # Explicitly provisional; never minted as an official persistent SOULCAP ID. + digest = hashlib.sha256(repr(exact).encode()).hexdigest()[:16] + return "unregistered:" + digest + + +def load_mappings(path: Path = DEFAULT_MAPPINGS) -> list[dict]: + rows = read_table(path) + seen: set[tuple[str, str]] = set() + known = set(entity_index().values()) + for row in rows: + pair = row["subject_id"], row["cl_id"] + if pair in seen or row["subject_id"] not in known: + raise ValueError(f"Duplicate mapping or unknown subject: {pair}") + if row["match_type"] not in ("Exact", "Broad", "Narrow", "Related"): + raise ValueError(f"Unknown match type: {row['match_type']}") + row["uncertain"] = row.get("uncertain", "").lower() == "true" + seen.add(pair) + return rows diff --git a/src/soulcap_cl_mapping/regression_triage.py b/src/soulcap_cl_mapping/regression_triage.py new file mode 100644 index 0000000..62de5d8 --- /dev/null +++ b/src/soulcap_cl_mapping/regression_triage.py @@ -0,0 +1,469 @@ +"""Offline diagnostic ablations; never modifies the production matcher or policies.""" + +from __future__ import annotations + +import argparse +import copy +import csv +import itertools +import json +from datetime import datetime, timezone +from pathlib import Path + +from soulcap_cl_mapping import audit, cl_match, evaluation, marker_resolution + +LEVELS = ("positive", "negative", "high", "low", "intermediate") +MODES = {"".join(map(str, bits)): bits for bits in itertools.product((0, 1), repeat=3)} +FACTORS = { + "A": "Add alias/allowed-PRO token evidence present in the enhanced index but absent in legacy.", + "P": "Remove legacy token evidence excluded by stricter policies, alias conflicts, synonym scope, or exact-PRO checks.", + "D": "Enable production semantic-clause deduplication using the fixed enhanced canonical alias map.", +} + + +def ablation_index(legacy: dict, enhanced: dict, bits: tuple) -> dict: + """Factor the actual endpoint token-set differences; preserve candidate order. + + Diagnostic combinations (especially D without A) are not deployable modes. + A and P partition all index evidence changes, not speculative causes. + """ + if list(legacy) != list(enhanced): + raise ValueError("Ablations require identical candidate IDs and order") + additions, removals, dedup = bits + result = {} + for cid, old in legacy.items(): + new = enhanced[cid] + entry = {"label": old["label"]} + if old["label"] != new["label"]: + raise ValueError("Candidate labels must be identical") + for level in LEVELS: + before, after = old.get(level, set()), new.get(level, set()) + entry[level] = (before | (after - before) if additions else before) - ( + before - after if removals else set() + ) + if dedup: + entry["resolver"] = new["resolver"] + result[cid] = entry + return result + + +def compact(result: dict) -> dict: + result = copy.deepcopy(result) + for candidate in result["candidates"] + result["target_results"]: + candidate.pop("resolution_evidence", None) + return result + + +def hit(result: dict, k: int = 5) -> bool: + return result["rank"] is not None and result["rank"] <= k + + +def token_changes(old: dict, new: dict, resolver: dict) -> list[dict]: + changes = [] + for level in LEVELS: + before, after = old.get(level, set()), new.get(level, set()) + for action, tokens in (("added", after - before), ("removed", before - after)): + for token in sorted(tokens): + owners = resolver["owners"].get(token, set()) + changes.append( + dict( + token=token, + level=level, + action=action, + policy_records=[ + resolver["policies"][o] for o in sorted(owners) + ], + conflicting_alias=token in resolver["conflicts"], + ) + ) + return changes + + +def build(root: Path) -> dict: + marker_map = root / "marker_mappings/marker_protein_gene.csv" + benchmark = root / "mappings/matcher_benchmark.tsv" + baseline = evaluation.evaluate(root, benchmark) + snapshot = audit.build_audit(root) + sources = {s["subject_id"]: s for s in snapshot["sources"]} + resolver = marker_resolution.load(marker_map) + axioms = cl_match.load_tsv(root / evaluation.INPUTS["axioms"]) + legacy = cl_match.build_cl_index(axioms) + enhanced = cl_match.build_cl_index(axioms, resolver=resolver) + runs = {} + for mode, bits in MODES.items(): + index = ablation_index(legacy, enhanced, bits) + runs[mode] = { + case["case_id"]: compact( + evaluation.score_case(case, sources.get(case["subject_id"]), index) + ) + for case in baseline["cases"] + } + # Check both endpoints against production, including score, ties and evidence. + for mode, index in (("000", legacy), ("111", enhanced)): + for case in baseline["cases"]: + actual = compact( + evaluation.score_case(case, sources.get(case["subject_id"]), index) + ) + if actual != runs[mode][case["case_id"]]: + raise ValueError( + f"Diagnostic endpoint mismatch: {mode} / {case['case_id']}" + ) + cases = [] + for case in baseline["cases"]: + key = case["case_id"] + old, new = runs["000"][key], runs["111"][key] + ranks = {mode: run[key]["rank"] for mode, run in runs.items()} + old_rank, new_rank = old["rank"] or float("inf"), new["rank"] or float("inf") + outcome = ( + "improved" + if new_rank < old_rank + else "regressed" + if new_rank > old_rank + else "unchanged" + ) + source = sources.get(case["subject_id"], {}) + targets = set(case["targets"]) + competitor_ids = {c["cl_id"] for r in (old, new) for c in r["candidates"]} + comparison_case = {**case, "targets": sorted(targets | competitor_ids)} + candidate_endpoints = { + mode: { + r["cl_id"]: r + for r in compact( + evaluation.score_case( + comparison_case, sources.get(case["subject_id"]), index + ) + )["target_results"] + } + for mode, index in (("000", legacy), ("111", enhanced)) + } + # Those queries use a union of inspection targets, so their acceptable- + # target tie bounds are not the original case's bounds. Keep case bounds + # in `runs` and only individual rank/score evidence in these details. + for endpoint in candidate_endpoints.values(): + for candidate in endpoint.values(): + candidate.pop("rank_best", None) + candidate.pop("rank_worst", None) + details = [] + for cid in sorted(targets | competitor_ids): + if cid not in legacy: + continue + changes = token_changes(legacy[cid], enhanced[cid], resolver) + changed_tokens = {c["token"] for c in changes} + relevant_axioms = [] + for axiom in axioms: + if axiom["cell"] != cid: + continue + old_tokens = cl_match._parse_cd_synonyms(axiom.get("cd_synonym", "")) + new_tokens, paths = marker_resolution.expand_axiom(axiom, resolver) + if (old_tokens ^ new_tokens) & changed_tokens: + relevant_axioms.append( + { + **axiom, + "legacy_tokens": sorted(old_tokens), + "enhanced_tokens": sorted(new_tokens), + "resolution_paths": paths, + } + ) + details.append( + dict( + cl_id=cid, + label=legacy[cid]["label"], + expected_target=cid in targets, + before=candidate_endpoints["000"].get(cid), + after=candidate_endpoints["111"].get(cid), + token_changes=changes, + relevant_axioms=relevant_axioms, + ) + ) + edges = [] + for mode, bits in MODES.items(): + for i, factor in enumerate(FACTORS): + if bits[i]: + continue + other = mode[:i] + "1" + mode[i + 1 :] + before, after = runs[mode][key], runs[other][key] + edges.append( + dict( + factor=factor, + before=mode, + after=other, + rank_before=before["rank"], + rank_after=after["rank"], + top5_delta=int(hit(after)) - int(hit(before)), + ) + ) + cases.append( + dict( + case_id=key, + subject_id=case["subject_id"], + label=source.get("label", ""), + cohort=case["cohort"], + match_type=case["match_type"], + targets=case["targets"], + outcome=outcome, + lost_top5=hit(old) and not hit(new), + gained_top5=hit(new) and not hit(old), + ranks=ranks, + factor_edges=edges, + source_profile=source.get("profile"), + candidate_changes=details, + runs={mode: run[key] for mode, run in runs.items()}, + ) + ) + inputs = { + **baseline["inputs"], + "marker_map": evaluation.digest(marker_map), + "marker_policy": evaluation.digest(marker_resolution.policy_path(marker_map)), + } + return dict( + schema_version=1, + generated_utc=datetime.now(timezone.utc).isoformat(), + inputs=inputs, + code_hashes={ + **baseline["matcher"]["source_hashes"], + "regression_triage.py": evaluation.digest(Path(__file__)), + }, + factors=FACTORS, + mode_order="APD (0 disabled, 1 enabled)", + candidate_count=len(legacy), + endpoint_checks="passed", + summary={ + "rank_improvements": sum(c["outcome"] == "improved" for c in cases), + "rank_regressions": sum(c["outcome"] == "regressed" for c in cases), + "unchanged_ranks": sum(c["outcome"] == "unchanged" for c in cases), + "lost_top5": sum(c["lost_top5"] for c in cases), + "gained_top5": sum(c["gained_top5"] for c in cases), + "cases_sensitive_to_factor": { + factor: sum( + any( + e["factor"] == factor and e["rank_before"] != e["rank_after"] + for e in c["factor_edges"] + ) + for c in cases + ) + for factor in FACTORS + }, + }, + limitations=[ + "Provisional targets are not biological ground truth; this report does not validate them.", + "A/P separate added and removed index evidence, not independent biological mechanisms. Their identities are fixed by current policy.", + "D uses the same canonical map in every diagnostic run. Intermediate combinations are not supported production settings.", + "Tie bounds describe sensitivity to input order. Factor effects may interact; there is no unique additive causal attribution.", + "All cohort cases remain in denominators. Invalid profiles and targets absent from the fixed index are not silently excluded.", + "No lexical expansion, biological policy edits, scoring-weight changes, or network requests.", + ], + metrics={ + mode: { + cohort: evaluation.metrics( + [r for r in run.values() if r["cohort"] == cohort] + ) + for cohort in ("reviewed", "provisional") + } + for mode, run in runs.items() + }, + cases=cases, + ) + + +def render(data: dict) -> str: + lines = [ + "# Matcher regression triage", + "", + "Generated: " + data["generated_utc"], + "", + "## Controlled experiment", + "", + f"Fixed candidate pool: {data['candidate_count']} terms. Both diagnostic endpoints match production results.", + "", + *[f"- {k}: {v}" for k, v in data["factors"].items()], + "", + "Modes are APD bit flags. These diagnostic switches do not change production settings.", + "", + "| Mode | Provisional cases | Top-1 | Top-3 | Top-5 | MRR |", + "|---|---:|---:|---:|---:|---:|", + ] + lines[4:4] = [ + "## Findings", + "", + "```json", + json.dumps(data["summary"], indent=2), + "```", + "", + "Factor sensitivity counts cases whose target rank changes in at least one paired toggle; it is not a sum of independent effects.", + "", + ] + for mode, cohorts in data["metrics"].items(): + m = cohorts["provisional"] + + def val(key: str) -> str: + return "unavailable" if m[key] is None else f"{m[key]:.4f}" + + lines.append( + f"| {mode} | {m['cases']} | {val('hit_at_1')} | {val('hit_at_3')} | {val('hit_at_5')} | {val('mrr')} |" + ) + lines += [ + "", + "Reviewed cohort results are separate in JSON; provisional metrics are not validated accuracy.", + "", + "## Cases crossing the top-five boundary", + "", + ] + boundary = [c for c in data["cases"] if c["lost_top5"] or c["gained_top5"]] + if not boundary: + lines.append("No boundary crossings.") + for c in boundary: + lines += [ + f"### {c['subject_id']} — {c['label']}", + "", + f"{c['cohort']} / {c['match_type']}; targets: {', '.join(c['targets'])}. " + + ("Lost" if c["lost_top5"] else "Gained") + + " top-five agreement.", + "", + "Ranks: " + + "; ".join( + f"{mode}={rank if rank is not None else 'unranked'}" + for mode, rank in c["ranks"].items() + ), + "", + ] + for mode in ("000", "100", "010", "001", "111"): + r = c["runs"][mode] + lines.append( + f"- {mode}: rank {r['rank']}; tie range {r['rank_best']}–{r['rank_worst']}; status {r['status']}." + ) + for target in c["targets"]: + before = next( + (t for t in c["runs"]["000"]["target_results"] if t["cl_id"] == target), + None, + ) + after = next( + (t for t in c["runs"]["111"]["target_results"] if t["cl_id"] == target), + None, + ) + if before and after: + lines += [ + "", + f"Target {target}: score {before['score']} → {after['score']}; required disqualification {before['disqualified']} → {after['disqualified']}.", + "", + "- Lost matched evidence: " + + "; ".join(sorted(set(before["matched"]) - set(after["matched"]))), + "- Added matched evidence: " + + "; ".join(sorted(set(after["matched"]) - set(before["matched"]))), + "- New gaps: " + + "; ".join(sorted(set(after["gaps"]) - set(before["gaps"]))), + "- New contradictions: " + + "; ".join( + sorted( + set(after["contradictions"]) - set(before["contradictions"]) + ) + ), + ] + lines += [ + "", + "Top candidates, legacy → enhanced:", + "", + ", ".join( + t["cl_id"] + f" ({t['score']})" for t in c["runs"]["000"]["candidates"] + ) + + " → " + + ", ".join( + t["cl_id"] + f" ({t['score']})" for t in c["runs"]["111"]["candidates"] + ), + "", + ] + lines += [ + "Policy records and changed axiom rows are attached to each affected target and competitor in JSON.", + "", + ] + for top in c["runs"]["111"]["candidates"][:3]: + detail = next( + d for d in c["candidate_changes"] if d["cl_id"] == top["cl_id"] + ) + before, after = detail["before"], detail["after"] + if before and after: + removed = sorted( + set(before["contradictions"]) - set(after["contradictions"]) + ) + lines += [ + f"- New top competitor {top['cl_id']} ({detail['label']}): rank {before['rank']} → {after['rank']}; score {before['score']} → {after['score']}; disqualified {before['disqualified']} → {after['disqualified']}; removed contradictions: {'; '.join(removed) or 'none'}." + ] + lines += [""] + lines += [ + "## All rank changes", + "", + "| Case | Direction | Legacy rank | Enhanced rank |", + "|---|---|---:|---:|", + ] + for c in data["cases"]: + if c["outcome"] != "unchanged": + lines.append( + f"| {c['case_id']} | {c['outcome']} | {c['ranks']['000']} | {c['ranks']['111']} |" + ) + lines += [ + "", + "JSON contains all eight runs, expected-target and competitor axiom changes, source profiles, all paired factor effects, and hashes. TSV contains one row per case.", + "", + "## Interpretation limits", + "", + *["- " + s for s in data["limitations"]], + "", + ] + return "\n".join(lines) + + +def main(argv: list[str] | None = None) -> int: + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument( + "--root", type=Path, default=Path(__file__).resolve().parents[2] + ) + parser.add_argument("--out-dir", type=Path) + args = parser.parse_args(argv) + root = args.root.resolve() + try: + data = build(root) + out = args.out_dir or root / "reports/regression-triage" + out.mkdir(parents=True, exist_ok=True) + (out / "regression_triage.json").write_text( + json.dumps(data, indent=2) + "\n", encoding="utf-8" + ) + (out / "regression_triage.md").write_text(render(data), encoding="utf-8") + with (out / "regression_triage.tsv").open( + "w", encoding="utf-8", newline="" + ) as fh: + writer = csv.DictWriter( + fh, + fieldnames=[ + "case_id", + "label", + "outcome", + "lost_top5", + "gained_top5", + *MODES, + ], + delimiter="\t", + ) + writer.writeheader() + writer.writerows( + { + **{ + k: c[k] + for k in ( + "case_id", + "label", + "outcome", + "lost_top5", + "gained_top5", + ) + }, + **c["ranks"], + } + for c in data["cases"] + ) + print(f"Wrote {len(data['cases'])} cases × 8 diagnostic runs to {out}") + return 0 + except (OSError, ValueError) as exc: + parser.exit(1, f"Triage failed: {exc}\n") + + +if __name__ == "__main__": + raise SystemExit(main()) diff --git a/src/soulcap_cl_mapping/resolution_audit.py b/src/soulcap_cl_mapping/resolution_audit.py new file mode 100644 index 0000000..9e84c5c --- /dev/null +++ b/src/soulcap_cl_mapping/resolution_audit.py @@ -0,0 +1,185 @@ +"""Explain resolver effects with identical sources, axioms, and mapping targets.""" + +from __future__ import annotations + +import argparse +import csv +import hashlib +import json +from collections import Counter +from datetime import datetime, timezone +from pathlib import Path + +from soulcap_cl_mapping import ( + audit, + candidate_index, + cl_match, + mapping_evidence, + marker_resolution, +) + + +def build_report(root: Path, marker_map: Path) -> dict: + snapshot = audit.build_audit(root) + if any( + i["status"] != "available" + for i in snapshot["inputs"] + if i["name"] in ("source", "entities", "mappings", "axioms") + ): + raise ValueError("Required audit inputs unavailable") + resolver = marker_resolution.load(marker_map) + axioms = cl_match.load_tsv(root / audit.INPUTS["axioms"]) + per_marker = [] + for token, policy in sorted(resolver["policies"].items()): + old, new = set(), set() + for i, row in enumerate(axioms): + if row.get("sense") not in ( + "positive", + "negative", + "high", + "low", + "intermediate", + ): + continue + if token in cl_match._parse_cd_synonyms(row.get("cd_synonym", "")): + old.add(i) + if token in candidate_index.expand_axiom(row, resolver)[0]: + new.add(i) + affected = sorted( + { + s["subject_id"] + for s in snapshot["sources"] + if token in {t.upper() for t in s["tokens"]} + } + ) + per_marker.append( + dict( + marker_token=token, + representation=policy["representation"], + protein_resolution=policy["protein_resolution"], + canonical=resolver["canonical"].get(token), + rationale=policy["rationale"], + source_ref=policy["source_ref"], + registry_tokens=sorted( + {r["marker_token"] for r in resolver["groups"][token]} + ), + legacy_axiom_rows=len(old), + enhanced_axiom_rows=len(new), + gained=len(new - old), + lost=len(old - new), + affected_subjects=affected, + ) + ) + sources = {s["subject_id"]: s for s in snapshot["sources"]} + comparisons = [] + for m in snapshot["mappings"]: + source = sources.get(m["subject_id"]) + profile = source["profile"] if source else None + old_evidence = mapping_evidence.assess(m, profile, axioms) + new_evidence = mapping_evidence.assess(m, profile, axioms, resolver=resolver) + comparisons.append( + dict( + subject_id=m["subject_id"], + cl_id=m["cl_id"], + legacy_status=old_evidence["status"], + enhanced_status=new_evidence["status"], + legacy_evidence=old_evidence, + enhanced_evidence=new_evidence, + ) + ) + paths = [ + root / audit.INPUTS[k] for k in ("source", "entities", "mappings", "axioms") + ] + [marker_map, marker_resolution.policy_path(marker_map)] + return dict( + schema_version=1, + generated_utc=datetime.now(timezone.utc).isoformat(), + inputs={str(p): hashlib.sha256(p.read_bytes()).hexdigest() for p in paths}, + note="Same source and axiom snapshots; no lexical expansion. Counts describe computational evidence, not biological accuracy. Source usage comes from valid cells only.", + summary={ + "normalized_markers": len(per_marker), + "registry_rows": sum(len(g) for g in resolver["groups"].values()), + "representations": dict(Counter(r["representation"] for r in per_marker)), + "markers_gaining_axioms": sum(r["gained"] > 0 for r in per_marker), + "markers_losing_axioms": sum(r["lost"] > 0 for r in per_marker), + "mapping_status_changes": sum( + r["legacy_status"] != r["enhanced_status"] for r in comparisons + ), + }, + markers=per_marker, + mapping_comparisons=comparisons, + issues=resolver["issues"], + ) + + +def main(argv: list[str] | None = None) -> int: + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument( + "--root", type=Path, default=Path(__file__).resolve().parents[2] + ) + parser.add_argument("--marker-map", type=Path) + parser.add_argument("--out-dir", type=Path) + args = parser.parse_args(argv) + root = args.root.resolve() + try: + data = build_report( + root, args.marker_map or root / "marker_mappings/marker_protein_gene.csv" + ) + out = args.out_dir or root / "reports" + out.mkdir(parents=True, exist_ok=True) + (out / "marker_resolution_audit.json").write_text( + json.dumps(data, indent=2) + "\n", encoding="utf-8" + ) + with (out / "marker_resolution_audit.tsv").open( + "w", encoding="utf-8", newline="" + ) as fh: + writer = csv.DictWriter( + fh, + fieldnames=[ + "marker_token", + "representation", + "protein_resolution", + "canonical", + "legacy_axiom_rows", + "enhanced_axiom_rows", + "gained", + "lost", + "rationale", + "source_ref", + ], + delimiter="\t", + extrasaction="ignore", + ) + writer.writeheader() + writer.writerows(data["markers"]) + lines = [ + "# Marker resolution audit", + "", + data["note"], + "", + "```json", + json.dumps(data["summary"], indent=2), + "```", + "", + "| Marker | Policy | Axiom rows before → after | Reason |", + "|---|---|---:|---|", + ] + for r in data["markers"]: + lines.append( + f"| {r['marker_token']} | {r['representation']} / {r['protein_resolution']} | {r['legacy_axiom_rows']} → {r['enhanced_axiom_rows']} | {r['rationale'].replace('|', '/').replace(chr(10), ' ')} |" + ) + lines += [ + "", + "See JSON for per-mapping evidence, source usage, policy issues, and input hashes.", + "", + ] + (out / "marker_resolution_audit.md").write_text( + "\n".join(lines), encoding="utf-8" + ) + print(json.dumps(data["summary"])) + return 0 + except (OSError, ValueError) as exc: + parser.exit(1, f"Resolution audit failed: {exc}\n") + + +if __name__ == "__main__": + raise SystemExit(main()) diff --git a/src/soulcap_cl_mapping/sssom_export.py b/src/soulcap_cl_mapping/sssom_export.py index 17c8c14..47b83b7 100644 --- a/src/soulcap_cl_mapping/sssom_export.py +++ b/src/soulcap_cl_mapping/sssom_export.py @@ -1,903 +1,23 @@ -"""Export curated SOULCAP -> CL mappings as an SSSOM TSV file. +"""Backward-compatible entry point for the registry-based exporter. -This is deliberately a separate, later step from proposing candidates: -`soulcap-match --batch [--lexical]` produces *unreviewed draft* candidates -(`reports/candidate_cl_mappings_batch.tsv` / `_agreement.tsv`); a human then -reviews them and writes the accepted decision into -`reports/candidate_cl_mappings.md` (prose, with rationale) *and* into the -small curated table in ``CURATED_MAPPINGS`` below (structured, one row per -decision). This module turns that curated table into a proper SSSOM -mapping set — the standard machine-readable format for cross-resource -mappings — rather than writing OWL axioms directly. - -SSSOM is the final output here, deliberately. Converting these mappings -into OWL logical axioms (``owl:equivalentClass``/``rdfs:subClassOf``) and -merging them into CL would assert them as *true*, which isn't this repo's -call to make unilaterally — that's for CL maintainers to accept, after -review, not something to automate. (An earlier version of this module did -exactly that as a CI check; removed after review feedback that it -overstepped.) - -Confidence and the ``comment`` field are **not** hand-typed per row — they -are derived automatically from whether CL directly asserts the matched -marker axiom(s) (``asserted`` column in ``cl_pro_relationships.tsv``) or -only has them by inference, or has no marker axiom for the term at all. This -directly captures the distinction the mapping was built to make explicit: -"this match is only supported by inferred markers, not confirmed ones" is a -real, different confidence tier from "CL directly asserts this." - -Usage:: - - soulcap-sssom # -> reports/candidate_cl_mappings.sssom.tsv - soulcap-sssom --out other/path.sssom.tsv +Decisions live in mappings/curated_mappings.tsv. Implementation is in +mapping_export; this module preserves existing CLI and library imports. """ -from __future__ import annotations - -import argparse -import csv -import sys -from pathlib import Path - -import pandas as pd -from curies import Converter -from sssom.util import MappingSetDataFrame -from sssom.writers import write_table - -REPO_ROOT = Path(__file__).resolve().parents[2] -DEFAULT_TSV = REPO_ROOT / "reports" / "cl_pro_relationships.tsv" -DEFAULT_OUT = REPO_ROOT / "reports" / "candidate_cl_mappings.sssom.tsv" - -MAPPING_SET_ID = "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/reports/candidate_cl_mappings.sssom.tsv" -LICENSE = "https://creativecommons.org/licenses/by/4.0/" -CURIE_MAP = { - "SOULCAP": "https://soulcap.org/cell_type/", - "CL": "http://purl.obolibrary.org/obo/CL_", - "skos": "http://www.w3.org/2004/02/skos/core#", - "semapv": "https://w3id.org/semapv/vocab/", -} - -# --------------------------------------------------------------------------- # -# The curated decision table — one row per reviewed SOULCAP -> CL mapping. -# Kept in sync by hand with reports/candidate_cl_mappings.md; each entry here -# should correspond to a "## " section (or table row) there. -# --------------------------------------------------------------------------- # -CURATED_MAPPINGS: list[dict] = [ - { - "abbreviation": "NK", - "subject_label": "Natural Killer Cell", - "cl_id": "CL:0000623", - "cl_label": "natural killer cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "CL:0000623 asserts only negative exclusion markers " - "(CD14-/CD19-/CD3-/CD20-); the defining positive CD56 marker is " - "absent — a documented CL gap (cl_term_issues.md), not confirmed here.", - }, - { - "abbreviation": "NK2", - "subject_label": "Natural Killer Cell 2", - "cl_id": "CL:0000938", - "cl_label": "CD16-negative, CD56-bright natural killer cell, human", - "match_type": "Exact", - }, - { - "abbreviation": "CTNK", - "subject_label": "Cytotoxic Natural Killer Cell", - "cl_id": "CL:0000939", - "cl_label": "CD16-positive, CD56-dim natural killer cell, human", - "match_type": "Exact", - }, - { - "abbreviation": "NK1", - "subject_label": "Natural Killer Cell 1", - "cl_id": "CL:0000939", - "cl_label": "CD16-positive, CD56-dim natural killer cell, human", - "match_type": "Broad", - "note": "CL does not distinguish CD57 status within this subtype.", - }, - { - "abbreviation": "NK3", - "subject_label": "Natural Killer Cell 3", - "cl_id": "CL:0000939", - "cl_label": "CD16-positive, CD56-dim natural killer cell, human", - "match_type": "Broad", - "note": "CL does not distinguish CD57 status within this subtype.", - }, - { - "abbreviation": "ILCp", - "subject_label": "Innate Lymphoid Cell Progenitor", - "cl_id": "CL:0001074", - "cl_label": "CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human", - "match_type": "Broad", - "uncertain": True, - "note": "SOULCAP profile does not test CD34; CL:0001073 (CD34-negative) " - "and CL:0001082 (immature innate lymphoid cell) are equally " - "marker-consistent alternatives, not ruled out.", - }, - { - "abbreviation": "ILC", - "subject_label": "Innate Lymphoid Cell", - "cl_id": "CL:0001065", - "cl_label": "innate lymphoid cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Marker-axiom scoring found nothing useful for this lineage; " - "match is lexical/name-based only, not CL-marker-supported.", - }, - { - "abbreviation": "ILC1", - "subject_label": "Innate Lymphoid Cell 1", - "cl_id": "CL:0001067", - "cl_label": "group 1 innate lymphoid cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Marker-axiom scoring found nothing useful for this lineage; " - "match is lexical/name-based only. No human-specific CL term exists " - "for group 1 (unlike group 2/3); filed as CL gap, repo issue #14.", - }, - { - "abbreviation": "ILC2", - "subject_label": "Innate Lymphoid Cell 2", - "cl_id": "CL:0001081", - "cl_label": "group 2 innate lymphoid cell, human", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Marker-axiom scoring found nothing useful for this lineage; " - "match is lexical/name-based only, confirmed by direct OLS4 lookup " - "after the batch lexical search had picked the wrong-species term.", - }, - { - "abbreviation": "ILC3", - "subject_label": "Innate Lymphoid Cell 3", - "cl_id": "CL:0001078", - "cl_label": "group 3 innate lymphoid cell, human", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Marker-axiom scoring found nothing useful for this lineage; " - "match is lexical/name-based only, confirmed by direct OLS4 lookup " - "after the batch lexical search had over-specified to an NKp44+ subtype.", - }, - { - "abbreviation": "cDC", - "subject_label": "Conventional Dendritic Cell", - "cl_id": "CL:0000990", - "cl_label": "conventional dendritic cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Marker-axiom scoring returned unrelated candidates; match is " - "lexical/name-based only.", - }, - { - "abbreviation": "cDC1", - "subject_label": "Conventional Dendritic Cell 1", - "cl_id": "CL:0002394", - "cl_label": "CD141-positive myeloid dendritic cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Marker-axiom scoring returned unrelated candidates; match is " - "lexical/name-based only, confirmed by direct OLS4 lookup after the " - "batch lexical search had wrongly assigned cDC1 the same term as cDC2.", - }, - { - "abbreviation": "cDC2", - "subject_label": "Conventional Dendritic Cell 2", - "cl_id": "CL:0002399", - "cl_label": "CD1c-positive myeloid dendritic cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Marker-axiom scoring returned unrelated candidates; match is " - "lexical/name-based only, confirmed correct by cross-check against cDC1.", - }, - { - "abbreviation": "pDC", - "subject_label": "Plasmacytoid Dendritic Cell", - "cl_id": "CL:0001058", - "cl_label": "plasmacytoid dendritic cell, human", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Marker-axiom scoring returned unrelated candidates; match is " - "lexical/name-based only. Sheet's Full Name reads 'Peripheral Dendritic " - "Cell' (likely a typo for 'Plasmacytoid'); not yet corrected at source.", - }, - { - "abbreviation": "Basophil (PBMC)", - "subject_label": "Basophil", - "cl_id": "CL:0000043", - "cl_label": "mature basophil", - "match_type": "Exact", - }, - { - "abbreviation": "Basophil (WB)", - "subject_label": "Basophil", - "cl_id": "CL:0000043", - "cl_label": "mature basophil", - "match_type": "Exact", - }, - { - "abbreviation": "Mono", - "subject_label": "Monocyte", - "cl_id": "CL:0000576", - "cl_label": "monocyte", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified exact label match (OLS4 was timing out); " - "CL:0000576 has no marker axioms recorded at all.", - }, - { - "abbreviation": "CMo", - "subject_label": "Classical Monocyte", - "cl_id": "CL:0000860", - "cl_label": "classical monocyte", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified exact label match. CL:0000860 asserts only CCR2 " - "(CD192) and lineage negatives, not the CD14/CD16 axioms that " - "actually define this subset — already tracked by repo issue #12.", - }, - { - "abbreviation": "NCMo", - "subject_label": "Non-classical Monocyte", - "cl_id": "CL:0000875", - "cl_label": "non-classical monocyte", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified exact label match. CL:0000875 asserts only " - "CX3CR1 and lineage negatives, not the CD14/CD16 axioms that " - "actually define this subset — already tracked by repo issue #12.", - }, - { - "abbreviation": "IntMo", - "subject_label": "Intermediate Monocyte", - "cl_id": "CL:0002393", - "cl_label": "intermediate monocyte", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified exact label match. CL:0002393 asserts only CCR2 " - "(CD192, negative) and lineage negatives, not the CD14/CD16 axioms " - "that actually define this subset — already tracked by repo issue #12.", - }, - { - "abbreviation": "Neutrophil", - "subject_label": "Neutrophil", - "cl_id": "CL:0000775", - "cl_label": "neutrophil", - "match_type": "Exact", - }, - { - "abbreviation": "Eosinophil", - "subject_label": "Eosinophil", - "cl_id": "CL:0000771", - "cl_label": "eosinophil", - "match_type": "Exact", - "note": "CD193 (CCR3) positive is directly asserted (not inferred) on " - "CL:0000771, precisely matching SOULCAP's defining CD193+ requirement " - "— one of the stronger marker-confirmed matches in this set.", - }, - { - "abbreviation": "B cell", - "subject_label": "B cell", - "cl_id": "CL:0000236", - "cl_label": "B cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OLS4 REST search returned zero hits for this exact query; " - "found instead via OAK. CL:0000236 has no marker axioms recorded.", - }, - { - "abbreviation": "ASC", - "subject_label": "Antibody Secreting Cell", - "cl_id": "CL:0000946", - "cl_label": "antibody secreting cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Lexical match; marker scoring found nothing useful (mouse " - "B220-nomenclature terms scored highest instead).", - }, - { - "abbreviation": "PB", - "subject_label": "Plasmablast", - "cl_id": "CL:0000980", - "cl_label": "plasmablast", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Lexical match; marker scoring found nothing useful.", - }, - { - "abbreviation": "PC", - "subject_label": "Plasma Cell", - "cl_id": "CL:0000786", - "cl_label": "plasma cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Lexical match; marker scoring found nothing useful.", - }, - { - "abbreviation": "T1/T2 B", - "subject_label": "Transitonal B cell 1 and 2", - "cl_id": "CL:0000818", - "cl_label": "transitional stage B cell", - "match_type": "Broad", - "evidence_override": "no_marker_axiom", - "note": "SOULCAP combines T1+T2 into one gate; CL keeps CL:0000958 (T1) " - "and CL:0000959 (T2) separate under this parent term. Sheet's Full " - "Name has a typo ('Transitonal').", - }, - { - "abbreviation": "Mature B", - "subject_label": "Mature B cell", - "cl_id": "CL:0000785", - "cl_label": "mature B cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Lexical match; marker scoring found nothing useful.", - }, - { - "abbreviation": "T3", - "subject_label": "Transitional B cell 3", - "cl_id": "CL:0000960", - "cl_label": "T3 B cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Lexical match; marker scoring found nothing useful.", - }, - { - "abbreviation": "Naive", - "subject_label": "Naive B cell", - "cl_id": "CL:0000788", - "cl_label": "naive B cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Lexical match; marker scoring found nothing useful.", - }, - { - "abbreviation": "BDN", - "subject_label": "Double Negative B cells", - "cl_id": "CL:0000981", - "cl_label": "double negative memory B cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified; batch lexical search had wrongly picked " - "CL:0002103, an IgG-positive-specific child term.", - }, - { - "abbreviation": "BDN1", - "subject_label": "Double Negative B cell 1", - "cl_id": "CL:0000981", - "cl_label": "double negative memory B cell", - "match_type": "Broad", - "evidence_override": "no_marker_axiom", - "note": "No CL term exists for the DN1-4 atypical B cell scheme " - "(CD21/CD11c/CD185/IgE-based); collapses to the general parent.", - }, - { - "abbreviation": "BDN2", - "subject_label": "Double Negative B cell 2", - "cl_id": "CL:0000981", - "cl_label": "double negative memory B cell", - "match_type": "Broad", - "evidence_override": "no_marker_axiom", - "note": "No CL term exists for the DN1-4 atypical B cell scheme " - "(CD21/CD11c/CD185/IgE-based); collapses to the general parent.", - }, - { - "abbreviation": "BDN3", - "subject_label": "Double Negative B cell 3", - "cl_id": "CL:0000981", - "cl_label": "double negative memory B cell", - "match_type": "Broad", - "evidence_override": "no_marker_axiom", - "note": "No CL term exists for the DN1-4 atypical B cell scheme " - "(CD21/CD11c/CD185/IgE-based); collapses to the general parent.", - }, - { - "abbreviation": "BDN4", - "subject_label": "Double Negative B cell 4", - "cl_id": "CL:0000981", - "cl_label": "double negative memory B cell", - "match_type": "Broad", - "evidence_override": "no_marker_axiom", - "note": "No CL term exists for the DN1-4 atypical B cell scheme " - "(CD21/CD11c/CD185/IgE-based); collapses to the general parent.", - }, - { - "abbreviation": "Bmem", - "subject_label": "Memory B cell", - "cl_id": "CL:0000787", - "cl_label": "memory B cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Lexical match; marker scoring found nothing useful.", - }, - { - "abbreviation": "Unswitched", - "subject_label": "Unswitched Memory B cell", - "cl_id": "CL:0000970", - "cl_label": "unswitched memory B cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Lexical match, OAK-confirmed.", - }, - { - "abbreviation": "IgM only", - "subject_label": "IgM-only Memory B cell", - "cl_id": "CL:0000971", - "cl_label": "IgM memory B cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Lexical match, OAK-confirmed.", - }, - { - "abbreviation": "Switched", - "subject_label": "Switched Memory B cell", - "cl_id": "CL:0000972", - "cl_label": "class switched memory B cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified; batch lexical search had wrongly picked " - "CL:0002117, an IgG-negative-specific child term (too narrow for the " - "general Switched parent, which shouldn't exclude any Ig class).", - }, - { - "abbreviation": "IgA", - "subject_label": "IgA-Class Switched B cell", - "cl_id": "CL:0000973", - "cl_label": "IgA memory B cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Lexical match, OAK-confirmed.", - }, - { - "abbreviation": "IgG", - "subject_label": "IgG-Class Switched B cell", - "cl_id": "CL:0000979", - "cl_label": "IgG memory B cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified; batch lexical search had wrongly picked " - "CL:0002117 'IgG-negative class switched memory B cell' — the " - "opposite polarity of what this row defines.", - }, - { - "abbreviation": "IgE", - "subject_label": "IgE-Class Switched B cell", - "cl_id": "CL:0000948", - "cl_label": "IgE memory B cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Lexical match, OAK-confirmed.", - }, - # -- T cell tree: core lineage -------------------------------------- - { - "abbreviation": "T cell", - "subject_label": "T lymphocyte", - "cl_id": "CL:0000084", - "cl_label": "T cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified; marker scoring returned unrelated myeloid terms.", - }, - { - "abbreviation": "TCRab", - "subject_label": "alpha/beta T cell", - "cl_id": "CL:0000789", - "cl_label": "alpha-beta T cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified; marker scoring returned unrelated myeloid terms.", - }, - { - "abbreviation": "TCRgd", - "subject_label": "gamma/delta T cell", - "cl_id": "CL:0000798", - "cl_label": "gamma-delta T cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified; marker scoring returned unrelated myeloid terms.", - }, - { - "abbreviation": "iNKT", - "subject_label": "Invariant Natural Killer T cell", - "cl_id": "CL:0000814", - "cl_label": "mature NK T cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified. Same term flagged in repo issue #13 for a " - "rename to 'iNKT cell' (filed upstream, awaiting review) — mapping " - "is correct either way.", - }, - { - "abbreviation": "MAIT", - "subject_label": "Mucosal-associated Invariant T cell", - "cl_id": "CL:0000940", - "cl_label": "mucosal-associated invariant T cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "Lexical match, OAK-confirmed.", - }, - { - "abbreviation": "CD4+ TCRab T cell", - "subject_label": "CD4+ alpha/beta T cell", - "cl_id": "CL:0000624", - "cl_label": "CD4-positive, alpha-beta T cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified.", - }, - { - "abbreviation": "CD8+ TCRab T cell", - "subject_label": "CD8+ alpha/beta T cell", - "cl_id": "CL:0000625", - "cl_label": "CD8-positive, alpha-beta T cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified.", - }, - { - "abbreviation": "CD4-/CD8- TCRgd", - "subject_label": "CD4-/CD8- gamma/delta T cell", - "cl_id": "CL:0000803", - "cl_label": "CD4-negative, CD8-negative gamma-delta T cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified; double-negative is the classical gamma-delta " - "T cell phenotype.", - }, - # -- T cell tree: combined-lineage (ab+gd) and DP/DN gaps ----------- - { - "abbreviation": "CD4+ T cell", - "subject_label": "alpha/beta and gamma/delta CD4+ T cells", - "cl_id": "CL:0000624", - "cl_label": "CD4-positive, alpha-beta T cell", - "match_type": "Broad", - "evidence_override": "no_marker_axiom", - "note": "CL has no combined alpha-beta+gamma-delta CD4+ term; " - "alpha-beta dominates the CD4+ compartment.", - }, - { - "abbreviation": "CD8+ T cell", - "subject_label": "alpha/beta and gamma/delta CD8+ T cells", - "cl_id": "CL:0000625", - "cl_label": "CD8-positive, alpha-beta T cell", - "match_type": "Broad", - "evidence_override": "no_marker_axiom", - "note": "Same reasoning as CD4+ T cell.", - }, - { - "abbreviation": "CD4+/CD8+ T cell", - "subject_label": "alpha/beta and gamma/delta CD4+ and CD8+ T cells", - "cl_id": "CL:0000789", - "cl_label": "alpha-beta T cell", - "match_type": "Broad", - "uncertain": True, - "evidence_override": "no_marker_axiom", - "note": "No CD4+CD8+ double-positive CL term found at all; peripheral " - "DP T cells are themselves biologically unusual.", - }, - { - "abbreviation": "CD4-/CD8- T cell", - "subject_label": "alpha/beta and gamma/delta CD4- and CD8- T cells", - "cl_id": "CL:0000084", - "cl_label": "T cell", - "match_type": "Broad", - "uncertain": True, - "evidence_override": "no_marker_axiom", - "note": "No peripheral (non-thymic) double-negative term spanning " - "both TCR types; only a thymocyte-stage term exists (wrong tissue).", - }, - { - "abbreviation": "CD4+/CD8+ TCRab T cell", - "subject_label": "CD4+ and CD8+ alpha/beta T cell", - "cl_id": "CL:0000789", - "cl_label": "alpha-beta T cell", - "match_type": "Broad", - "uncertain": True, - "evidence_override": "no_marker_axiom", - "note": "No CD4+CD8+ double-positive alpha-beta term found.", - }, - { - "abbreviation": "CD4-/CD8- TCRab T cell", - "subject_label": "CD4- and CD8- alpha/beta T cell", - "cl_id": "CL:0000789", - "cl_label": "alpha-beta T cell", - "match_type": "Broad", - "uncertain": True, - "evidence_override": "no_marker_axiom", - "note": "Only CL:0002489 'double negative thymocyte' found — wrong " - "tissue/maturity stage for a blood/PBMC panel.", - }, - { - "abbreviation": "CD4+ TCRgd T cell", - "subject_label": "CD4+ gamma/delta T cell", - "cl_id": "CL:0000798", - "cl_label": "gamma-delta T cell", - "match_type": "Broad", - "uncertain": True, - "evidence_override": "no_marker_axiom", - "note": "CD4+ gamma-delta T cells are atypical/rare; no CL term found.", - }, - { - "abbreviation": "CD8+ TCRgd T cell", - "subject_label": "CD8+ gamma/delta T cell", - "cl_id": "CL:0000798", - "cl_label": "gamma-delta T cell", - "match_type": "Broad", - "uncertain": True, - "evidence_override": "no_marker_axiom", - "note": "No CD8+-specific gamma-delta CL term found.", - }, - { - "abbreviation": "CD4+/CD8+ TCRgd", - "subject_label": "CD4+/CD8+ gamma/delta T cell", - "cl_id": "CL:0000798", - "cl_label": "gamma-delta T cell", - "match_type": "Broad", - "uncertain": True, - "evidence_override": "no_marker_axiom", - "note": "No CD4+CD8+ double-positive gamma-delta term found.", - }, - # -- T cell tree: CD56+ family (all 13 -> one CL term) -------------- - *[ - { - "abbreviation": ab, - "subject_label": label, - "cl_id": "CL:4052055", - "cl_label": "mature NK T cell, human", - "match_type": "Broad", - "evidence_override": "no_marker_axiom", - "note": "Same term flagged in repo issue #13 for a rename to " - "'CD56-positive T cell, human' (filed upstream, awaiting review). " - "CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's " - "panel does, so all 13 CD56+ T cell rows collapse to this one term.", - } - for ab, label in [ - ("CD56+ T cell", "CD56+ T cell"), - ("CD56+ CD4 T cell", "CD56+ CD4 T cell"), - ("CD56+ CD8 T cell", "CD56+ CD8 T cell"), - ("CD56+ TCRab", "CD56+ alpha/beta T cell"), - ("CD56+ CD4+ TCRab", "CD56+ CD4+ alpha/beta T cell"), - ("CD56+ CD8+ TCRab", "CD56+ CD8+ alpha/beta T cell"), - ("CD56+ CD4+/CD8+ TCRab", "CD56+ CD4+/CD8+ alpha/beta T cell"), - ("CD56+ CD4-/CD8- TCRab", "CD56+ CD4-/CD8- alpha/beta T cell"), - ("CD56+ TCRgd", "CD56+ gamma/delta T cell"), - ("CD56+ CD4+ TCRgd", "CD56+ CD4+ gamma/delta T cell"), - ("CD56+ CD8+ TCRgd", "CD56+ CD8+ gamma/delta T cell"), - ("CD56+ CD4+/CD8+ TCRgd", "CD56+ CD4+/CD8+ gamma/delta T cell"), - ("CD56+ CD8-/CD8- TCRgd", "CD56+ CD8-/CD8- gamma/delta T cell"), - ] - ], - # -- T cell tree: naive / Tcm / Tem / Temra x CD4/CD8, alpha-beta --- - { - "abbreviation": "Tnaive", - "subject_label": "Naive alpha/beta and gamma/delta T cell", - "cl_id": "CL:0000898", - "cl_label": "naive T cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified; the one generic (non-CD4/CD8-split) " - "differentiation-state term that does exist in CL.", - }, - { - "abbreviation": "CD4+ TCRab Tnaive", - "subject_label": "CD4+ naive alpha/beta T cell", - "cl_id": "CL:0000895", - "cl_label": "naive thymus-derived CD4-positive, alpha-beta T cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified.", - }, - { - "abbreviation": "CD8+ TCRab Tnaive", - "subject_label": "CD8+ naive alpha/beta T cell", - "cl_id": "CL:0000900", - "cl_label": "naive thymus-derived CD8-positive, alpha-beta T cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified.", - }, - { - "abbreviation": "CD4+ TCRab Tcm", - "subject_label": "CD4+ central memory alpha/beta T cell", - "cl_id": "CL:0000904", - "cl_label": "central memory CD4-positive, alpha-beta T cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified.", - }, - { - "abbreviation": "CD8+ TCRab Tcm", - "subject_label": "CD8+ central memory alpha/beta T cell", - "cl_id": "CL:0000907", - "cl_label": "central memory CD8-positive, alpha-beta T cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified.", - }, - { - "abbreviation": "CD4+ TCRab Tem", - "subject_label": "CD4+ effector memory alpha/beta T cell", - "cl_id": "CL:0000905", - "cl_label": "effector memory CD4-positive, alpha-beta T cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified.", - }, - { - "abbreviation": "CD8+ TCRab Tem", - "subject_label": "CD8+ effector memory alpha/beta T cell", - "cl_id": "CL:0000913", - "cl_label": "effector memory CD8-positive, alpha-beta T cell", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified.", - }, - { - "abbreviation": "CD4+ TCRab Temra", - "subject_label": "CD4+ CD45RA+ effector memory alpha/beta T cell", - "cl_id": "CL:4030002", - "cl_label": "effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", - "note": "OAK-verified. No CD8+-specific counterpart with this " - "'terminally differentiated' qualifier was found — see gaps.tsv.", - }, -] - -_PREDICATE_BY_MATCH_TYPE = { - "Exact": "skos:exactMatch", - "Broad": "skos:broadMatch", -} - -_EVIDENCE_CONFIDENCE = { - ("confirmed", "Exact"): 0.9, - ("confirmed", "Broad"): 0.75, - ("inferred_only", "Exact"): 0.6, - ("inferred_only", "Broad"): 0.5, - ("no_marker_axiom", "Exact"): 0.55, - ("no_marker_axiom", "Broad"): 0.4, -} - -_EVIDENCE_COMMENT = { - "confirmed": "Supported by directly-asserted CL marker axiom(s).", - "inferred_only": "Supported only by inferred (not directly asserted) CL " - "marker axioms — treat with lower confidence than a directly-asserted match.", - "no_marker_axiom": "CL has no marker axiom recorded for this term; match is " - "based on lexical/name correspondence (and literature where available), " - "not confirmed CL markers.", -} - -UNCERTAIN_CONFIDENCE_CAP = 0.3 - - -# --------------------------------------------------------------------------- # -# Evidence classification from cl_pro_relationships.tsv -# --------------------------------------------------------------------------- # -def load_assertion_status(tsv_path: Path = DEFAULT_TSV) -> dict[str, bool]: - """Return ``{cl_id: has_any_directly_asserted_axiom}`` from the CL-PRO TSV. - - A CL ID missing from the returned dict has *no* marker axiom rows at all - in the TSV (i.e. ``cl_pro_relationships`` has nothing on it). - """ - status: dict[str, bool] = {} - with tsv_path.open(encoding="utf-8", newline="") as fh: - reader = csv.DictReader(fh, delimiter="\t") - for row in reader: - cl_id = row.get("cell", "") - if not cl_id: - continue - asserted = row.get("asserted", "").strip().lower() == "true" - status[cl_id] = status.get(cl_id, False) or asserted - return status - - -def classify_evidence(cl_id: str, assertion_status: dict[str, bool]) -> str: - """Classify a CL ID's marker-axiom support: confirmed / inferred_only / no_marker_axiom.""" - if cl_id not in assertion_status: - return "no_marker_axiom" - return "confirmed" if assertion_status[cl_id] else "inferred_only" - - -# --------------------------------------------------------------------------- # -# Build mapping rows -# --------------------------------------------------------------------------- # -def build_mapping_rows( - curated: list[dict], - assertion_status: dict[str, bool], -) -> list[dict]: - """Turn ``CURATED_MAPPINGS``-shaped entries into SSSOM mapping rows.""" - object_counts: dict[str, int] = {} - for entry in curated: - object_counts[entry["cl_id"]] = object_counts.get(entry["cl_id"], 0) + 1 - - rows = [] - for entry in curated: - match_type = entry["match_type"] - evidence = entry.get("evidence_override") or classify_evidence( - entry["cl_id"], assertion_status - ) - confidence = _EVIDENCE_CONFIDENCE[(evidence, match_type)] - comment = _EVIDENCE_COMMENT[evidence] - if entry.get("uncertain"): - confidence = min(confidence, UNCERTAIN_CONFIDENCE_CAP) - if entry.get("note"): - comment = f"{entry['note']} {comment}" - - rows.append( - { - "subject_id": f"SOULCAP:{entry['abbreviation'].replace(' ', '_')}", - "subject_label": entry["subject_label"], - "predicate_id": _PREDICATE_BY_MATCH_TYPE[match_type], - "object_id": entry["cl_id"], - "object_label": entry["cl_label"], - "mapping_justification": "semapv:ManualMappingCuration", - "confidence": confidence, - "mapping_cardinality": "n:1" - if object_counts[entry["cl_id"]] > 1 - else "1:1", - "comment": comment, - "mapping_tool": "soulcap-match + soulcap-cl-matching skill", - } - ) - return rows - - -# --------------------------------------------------------------------------- # -# SSSOM writing -# --------------------------------------------------------------------------- # -def write_sssom(path: Path, rows: list[dict]) -> None: - """Write *rows* (as produced by :func:`build_mapping_rows`) to *path* as SSSOM TSV.""" - df = pd.DataFrame(rows) - converter = Converter.from_prefix_map(CURIE_MAP) - msdf = MappingSetDataFrame( - df=df, - converter=converter, - metadata={"mapping_set_id": MAPPING_SET_ID, "license": LICENSE}, - ) - path.parent.mkdir(parents=True, exist_ok=True) - with path.open("w", encoding="utf-8", newline="") as fh: - write_table(msdf, fh) - - -# --------------------------------------------------------------------------- # -# CLI -# --------------------------------------------------------------------------- # -def main(argv: list[str] | None = None) -> int: - parser = argparse.ArgumentParser( - prog="soulcap-sssom", - description="Export the curated SOULCAP -> CL mapping table as SSSOM TSV.", - ) - parser.add_argument( - "--tsv", - type=Path, - default=DEFAULT_TSV, - help="Path to cl_pro_relationships.tsv.", - ) - parser.add_argument( - "--out", - type=Path, - default=DEFAULT_OUT, - help=f"Output path (default: {DEFAULT_OUT}).", - ) - args = parser.parse_args(argv) - - if not args.tsv.exists(): - print( - f"error: {args.tsv} not found — run `soulcap-cl-pro` to regenerate it.", - file=sys.stderr, - ) - return 1 - - try: - assertion_status = load_assertion_status(args.tsv) - rows = build_mapping_rows(CURATED_MAPPINGS, assertion_status) - write_sssom(args.out, rows) - except Exception as exc: # noqa: BLE001 - print(f"error: {exc}", file=sys.stderr) - return 1 - - print(f"Wrote {len(rows)} mappings to {args.out}") - return 0 - +from soulcap_cl_mapping.mapping_export import ( # noqa: F401 + CURATED_MAPPINGS, + CURIE_MAP, + DEFAULT_OUT, + DEFAULT_TSV, + LICENSE, + MAPPING_SET_ID, + build_mapping_rows, + classify_evidence, + load_assertion_status, + main, + write_review, + write_sssom, +) if __name__ == "__main__": raise SystemExit(main()) diff --git a/tests/test_audit.py b/tests/test_audit.py new file mode 100644 index 0000000..276281e --- /dev/null +++ b/tests/test_audit.py @@ -0,0 +1,418 @@ +"""Audit tests use small local snapshots; no live services or private sheet needed.""" + +import csv +import hashlib +import json +from datetime import datetime, timezone + +import pytest + +from soulcap_cl_mapping import audit, registry + +NOW = datetime(2026, 9, 10, tzinfo=timezone.utc) + + +@pytest.mark.parametrize( + "notes,proteins,genes,expected", + [ + ( + "generic reagent; not a specific protein", + [], + [], + "documented_nonprotein_or_reagent", + ), + ("recognises assembled heterodimer", [], [], "documented_complex_or_family"), + ("two-gene marker", ["PR:1"], ["A"], "documented_complex_or_family"), + ("likely parsing artifact", [], [], "source_artifact_needs_review"), + ("", [], [], "no_pro_mapping"), + ("", ["PR:1"], [], "no_gene_mapping"), + ("", ["PR:1", "PR:2"], ["A"], "multiple_proteins_needs_review"), + ("", ["PR:1"], ["A"], "mapped"), + ], +) +def test_marker_status_representation(notes, proteins, genes, expected): + item = {"records": [{"notes": notes}], "pro_ids": proteins, "gene_symbols": genes} + assert audit.marker_status(item, True)[0] == expected + assert audit.marker_status(item, False)[0] == "unavailable" + + +@pytest.mark.parametrize( + "notes", + [ + "lipid antigen; not a protein marker", + "HNK-1 carbohydrate epitope synthesised by B3GAT1", + ], +) +def test_nonprotein_notes_are_not_unresolved(notes): + item = {"records": [{"notes": notes}], "pro_ids": [], "gene_symbols": []} + assert audit.marker_status(item, True)[0] == "documented_nonprotein_or_reagent" + + +def table(root, name, rows, fields=None): + path = root / audit.INPUTS[name] + path.parent.mkdir(parents=True, exist_ok=True) + with path.open("w", encoding="utf-8", newline="") as fh: + w = csv.DictWriter( + fh, + fieldnames=fields or list(rows[0]), + delimiter="," if name in ("source", "markers") else "\t", + ) + w.writeheader() + w.writerows(rows) + return path + + +@pytest.fixture +def snapshot(tmp_path): + source = { + "Abbreviation": "A", + "Parent": "", + "WB or PBMC": "WB", + "Full Name": "A cell", + "Required exclusion": "", + "Ideal exclusion": "", + "Required phenotypic markers": "CD3+", + "Ideal phenotypic markers": "", + "OLS CL identifier": "CL:0000001", + } + other = { + **source, + "Abbreviation": "B", + "Full Name": "B cell", + "OLS CL identifier": "", + } + table(tmp_path, "source", [source, other]) + entities = [ + { + "subject_id": sid, + "Abbreviation": row["Abbreviation"], + "Parent": "", + "WB or PBMC": "WB", + "profile_signature": registry.profile_signature(row), + } + for sid, row in zip(["SOULCAP:1", "SOULCAP:2"], [source, other]) + ] + table(tmp_path, "entities", entities) + table( + tmp_path, + "mappings", + [ + { + "subject_id": "SOULCAP:1", + "cl_id": "CL:0000001", + "cl_label": "cell", + "match_type": "Exact", + "review_status": "needs_review", + "uncertain": "true", + "literature_evidence": "", + "lexical_evidence": "", + "curator_evidence": "", + "evidence_source": "reports/candidate_cl_mappings_narrative.md", + } + ], + ) + table( + tmp_path, + "axioms", + [ + { + "cell": "CL:0000001", + "cell_label": "cell", + "sense": "positive", + "asserted": "True", + "cd_synonym": "CD3 (exact)", + "pr": "PR:0000001", + } + ], + ) + table( + tmp_path, + "markers", + [ + { + "marker_token": "CD3", + "pro_id": "PR:0000001", + "gene_symbol": "CD3E", + "ncbi_gene_id": "", + } + ], + ) + table( + tmp_path, + "gaps", + [ + { + "soulcap_abbreviation": "A", + "gap_type": "cl_axiom_gap", + "status": "open", + "description": "example", + "repo_issue": "https://example.org/issue/1", + }, + { + "soulcap_abbreviation": "A / B", + "gap_type": "cl_axiom_gap", + "status": "open", + "description": "family", + "repo_issue": "", + }, + ], + ) + table(tmp_path, "agreement", [{"abbreviation": "A", "agreement": "yes"}]) + table( + tmp_path, + "species", + [{"cl_id": "CL:0000001", "pr_id": "PR:0000001", "species_support": "human"}], + ) + (tmp_path / audit.INPUTS["ontology_report"]).write_text( + "Generated 2026-06-29 from local snapshot." + ) + (tmp_path / audit.INPUTS["narrative"]).write_text("Legacy evidence.") + return tmp_path + + +def codes(data): + return {f["code"] for f in data["findings"]} + + +def test_distinct_entity_counts_and_reverse_view(snapshot): + rows = registry.read_table(snapshot / audit.INPUTS["mappings"]) + rows += [{**rows[0], "cl_id": "CL:0000002"}, {**rows[0], "subject_id": "SOULCAP:2"}] + table(snapshot, "mappings", rows) + data = audit.build_audit(snapshot, NOW) + assert data["summary"]["source_rows"] == 2 + assert data["summary"]["mapping_records"] == 3 + assert data["summary"]["source_entities_with_proposals"] == 2 + assert data["summary"]["source_entities_without_proposals"] == 0 + assert len(data["cl_terms"][0]["subject_ids"]) == 2 + assert data["provenance"]["ontology_age_days"] == 73 + assert data["provenance"]["upstream_checked"] is False + assert data["provenance"]["agreement"] == "historical_without_ids" + + +def test_missing_required_data_is_unavailable_not_zero(snapshot): + (snapshot / audit.INPUTS["source"]).unlink() + data = audit.build_audit(snapshot, NOW) + assert data["summary"]["source_rows"] is None + assert data["summary"]["source_entities_without_proposals"] is None + assert "input_missing" in codes(data) + assert "mapping_without_source" in codes(data) + + +@pytest.mark.parametrize( + "content", + [ + "wrong,header\nvalue,value\n", + "Abbreviation,Required exclusion,Ideal exclusion,Required phenotypic markers,Ideal phenotypic markers\nA\n", + "Abbreviation,Required exclusion,Ideal exclusion,Required phenotypic markers,Ideal phenotypic markers\nA,,,,,extra\n", + ], +) +def test_damaged_source_does_not_crash(snapshot, content): + (snapshot / audit.INPUTS["source"]).write_text(content) + data = audit.build_audit(snapshot, NOW) + assert "input_invalid" in codes(data) + assert data["summary"]["source_rows"] is None + + +def test_ambiguous_registry_identity_withholds_mapping_evidence(snapshot): + entities = registry.read_table(snapshot / audit.INPUTS["entities"]) + table(snapshot, "entities", entities + [entities[0]]) + data = audit.build_audit(snapshot, NOW) + assert { + "duplicate_entity_id", + "unresolved_identity", + "mapping_without_source", + } <= codes(data) + assert data["sources"][0]["subject_id"].startswith("unresolved:") + + +def test_duplicate_source_rows_never_overwrite_each_other(snapshot): + with (snapshot / audit.INPUTS["source"]).open() as fh: + rows = list(csv.DictReader(fh)) + table(snapshot, "source", rows + [rows[0]]) + data = audit.build_audit(snapshot, NOW) + assert data["summary"]["source_rows"] == 3 + assert data["summary"]["source_entities_with_proposals"] == 1 + assert data["mappings"][0]["evidence"]["status"] == "ambiguous_source" + assert "duplicate_source_identity" in codes(data) + assert data["gaps"][0]["association"] == "ambiguous" + + +def test_duplicate_abbreviations_resolve_using_profile_signature(snapshot): + with (snapshot / audit.INPUTS["source"]).open() as fh: + sources = list(csv.DictReader(fh)) + sources[1]["Abbreviation"] = "A" + sources[1]["Required phenotypic markers"] = "CD4+" + table(snapshot, "source", sources) + entities = registry.read_table(snapshot / audit.INPUTS["entities"]) + entities[1].update( + Abbreviation="A", profile_signature=registry.profile_signature(sources[1]) + ) + table(snapshot, "entities", entities) + data = audit.build_audit(snapshot, NOW) + assert [s["subject_id"] for s in data["sources"]] == ["SOULCAP:1", "SOULCAP:2"] + + +def test_invalid_profile_and_profile_drift_are_reported(snapshot): + with (snapshot / audit.INPUTS["source"]).open() as fh: + rows = list(csv.DictReader(fh)) + rows[0]["Required phenotypic markers"] = "CD3+ (" + table(snapshot, "source", rows) + data = audit.build_audit(snapshot, NOW) + assert {"invalid_profile", "profile_changed"} <= codes(data) + assert data["mappings"][0]["evidence"]["status"] == "invalid_profile" + assert data["summary"]["invalid_marker_cells"] == 1 + + +def test_conflicts_sheet_disagreement_and_missing_axioms(snapshot): + mappings = registry.read_table(snapshot / audit.INPUTS["mappings"]) + mappings[0]["cl_id"] = "CL:0000002" + table(snapshot, "mappings", mappings) + table( + snapshot, + "axioms", + [ + { + "cell": "CL:0000002", + "cell_label": "cell", + "sense": "negative", + "asserted": "True", + "cd_synonym": "CD3 (exact)", + } + ], + ) + data = audit.build_audit(snapshot, NOW) + assert {"marker_contradiction", "sheet_disagreement"} <= codes(data) + (snapshot / audit.INPUTS["axioms"]).unlink() + assert ( + audit.build_audit(snapshot, NOW)["mappings"][0]["evidence"]["status"] + == "unavailable_axioms" + ) + + +def test_invalid_duplicate_and_unknown_mapping_records(snapshot): + rows = registry.read_table(snapshot / audit.INPUTS["mappings"]) + table( + snapshot, + "mappings", + rows + + rows + + [{**rows[0], "subject_id": "unknown", "cl_id": "bad", "match_type": "Wrong"}], + ) + data = audit.build_audit(snapshot, NOW) + assert {"duplicate_mapping", "invalid_mapping", "unknown_mapping_subject"} <= codes( + data + ) + + +def test_gap_family_associations_stay_explicit(snapshot): + data = audit.build_audit(snapshot, NOW) + assert data["gaps"][0]["subject_ids"] == ["SOULCAP:1"] + assert data["gaps"][1]["association"] == "family_or_unresolved" + assert data["gaps"][1]["subject_ids"] == [] + + +def test_multiple_proteins_and_unmapped_marker_usage(snapshot): + table( + snapshot, + "markers", + [ + {"marker_token": "CD3", "pro_id": "PR:1", "gene_symbol": ""}, + {"marker_token": "CD3", "pro_id": "PR:2", "gene_symbol": ""}, + {"marker_token": "X", "pro_id": "", "gene_symbol": ""}, + ], + ) + data = audit.build_audit(snapshot, NOW) + assert data["markers"][0]["pro_ids"] == ["PR:1", "PR:2"] + assert data["markers"][0]["affected_subjects"] == ["SOULCAP:1", "SOULCAP:2"] + assert data["markers"][1]["status"] == "no_pro_mapping" + (snapshot / audit.INPUTS["markers"]).unlink() + assert audit.build_audit(snapshot, NOW)["markers"][0]["status"] == "unavailable" + + +def save_manifest(root): + values = { + audit.INPUTS[k].replace("/", "\\"): hashlib.sha256( + (root / audit.INPUTS[k]).read_bytes() + ).hexdigest() + for k in ("source", "entities", "mappings", "axioms") + } + (root / audit.INPUTS["manifest"]).write_text(json.dumps(values)) + + +def test_export_hashes_and_evidence_drift(snapshot): + save_manifest(snapshot) + evidence = audit.build_audit(snapshot, NOW)["mappings"][0]["evidence"] + exported = { + "subject_id": "SOULCAP:1", + "object_id": "CL:0000001", + "predicate_id": "skos:exactMatch", + "comment": json.dumps({"marker_evidence": evidence}), + } + table(snapshot, "export", [exported]) + data = audit.build_audit(snapshot, NOW) + assert ( + data["provenance"]["export_inputs"] + == data["provenance"]["export_decisions"] + == data["provenance"]["export_evidence"] + == "match" + ) + table( + snapshot, + "export", + [{**exported, "comment": "broken JSON", "object_id": "CL:0000002"}], + ) + assert {"export_decision_drift", "export_evidence_drift"} <= codes( + audit.build_audit(snapshot, NOW) + ) + with (snapshot / audit.INPUTS["mappings"]).open("a") as fh: + fh.write("\n") + assert audit.build_audit(snapshot, NOW)["provenance"]["export_inputs"] == "changed" + + +@pytest.mark.parametrize( + "content", ["[]", "{}", "not json", '{"../../private": "hash"}'] +) +def test_bad_manifest_cannot_read_unlisted_files(snapshot, content): + (snapshot / audit.INPUTS["manifest"]).write_text(content) + assert audit.build_audit(snapshot, NOW)["provenance"]["export_inputs"] != "match" + + +def test_bad_snapshot_date_is_not_assumed(snapshot): + (snapshot / audit.INPUTS["ontology_report"]).write_text("Generated 2026-99-99") + assert "invalid_snapshot_date" in codes(audit.build_audit(snapshot, NOW)) + + +def test_html_payload_is_safe_and_recoverable(snapshot): + data = audit.build_audit(snapshot, NOW) + attack = '&' + data["sources"][0]["label"] = attack + html = audit.render_html(data) + assert attack not in html + encoded = html.split('" + )[0] + assert json.loads(encoded)["sources"][0]["label"] == attack + assert "innerHTML" not in html + + +def test_links_and_cli_are_read_only(snapshot, tmp_path): + original = {p: p.read_bytes() for p in snapshot.rglob("*") if p.is_file()} + out = tmp_path / "output" + assert audit.main(["--root", str(snapshot), "--out-dir", str(out)]) == 0 + assert {p: p.read_bytes() for p in original} == original + data = json.loads((out / "audit_data.json").read_text(encoding="utf-8")) + assert data["gaps"][0]["evidence_links"][0]["href"] == "https://example.org/issue/1" + assert data["mappings"][0]["evidence_links"] + assert (out / "audit_dashboard.html").exists() + assert (out / "audit_summary.md").exists() + (snapshot / audit.INPUTS["source"]).unlink() + assert audit.main(["--root", str(snapshot), "--out-dir", str(out), "--strict"]) == 1 + + +def test_unsafe_reference_is_not_a_link(snapshot): + data = audit.build_audit(snapshot, NOW) + data["mappings"][0]["evidence_source"] = ( + "javascript:alert(1); reports/../../private.txt" + ) + audit.add_links(data, snapshot, snapshot / "reports") + assert data["mappings"][0]["evidence_links"] == [] diff --git a/tests/test_benchmark_reserve.py b/tests/test_benchmark_reserve.py new file mode 100644 index 0000000..9e4fc19 --- /dev/null +++ b/tests/test_benchmark_reserve.py @@ -0,0 +1,54 @@ +"""Guard the prospective reserve against development leakage or silent drift.""" + +import csv +import hashlib +import json +from collections import defaultdict +from pathlib import Path + + +ROOT = Path(__file__).resolve().parents[1] + + +def test_reserve_is_reproducible_and_separate_from_development(): + reserve = json.loads((ROOT / "mappings/benchmark_reserve.json").read_text()) + with (ROOT / "mappings/soulcap_entities.tsv").open(encoding="utf-8") as fh: + entities = list(csv.DictReader(fh, delimiter="\t")) + with (ROOT / "mappings/curated_mappings.tsv").open(encoding="utf-8") as fh: + development = {r["subject_id"] for r in csv.DictReader(fh, delimiter="\t")} + with (ROOT / "mappings/matcher_benchmark.tsv").open(encoding="utf-8") as fh: + benchmark = {r["subject_id"] for r in csv.DictReader(fh, delimiter="\t")} + development_profiles = { + r["profile_signature"] for r in entities if r["subject_id"] in development + } + groups = defaultdict(list) + for row in entities: + signature = row["profile_signature"] + if ( + row["subject_id"] not in development + and signature not in development_profiles + and signature != hashlib.sha256(b"\n\n\n").hexdigest() + ): + groups[signature].append(row["subject_id"]) + assert len(groups) == reserve["eligible_profile_groups"] + ordered = sorted( + groups, + key=lambda s: hashlib.sha256( + (reserve["selection_seed"] + "\n" + s).encode() + ).hexdigest(), + )[:5] + assert reserve["groups"] == [ + {"profile_signature": s, "subject_ids": groups[s]} for s in ordered + ] + reserved = {sid for group in reserve["groups"] for sid in group["subject_ids"]} + assert not reserved & (development | benchmark) + for path, expected in reserve["source_hashes"].items(): + full = ROOT / path + if not full.exists(): + # data/ is a gitignored sync cache (see CLAUDE.md) and is never + # present in CI; this hash is only verifiable where it's synced. + assert path.startswith("data/"), f"Missing tracked reserve input: {path}" + continue + assert hashlib.sha256(full.read_bytes()).hexdigest() == expected, ( + "Reserve inputs changed: review and explicitly re-freeze the partition" + ) diff --git a/tests/test_candidate_index.py b/tests/test_candidate_index.py new file mode 100644 index 0000000..88d15ba --- /dev/null +++ b/tests/test_candidate_index.py @@ -0,0 +1,318 @@ +import csv +import json +import sqlite3 +from collections import defaultdict + +import pytest + +from soulcap_cl_mapping import ( + candidate_index as ci, + cl_match, + evaluation, + marker_resolution, +) +from tests.test_audit import snapshot as snapshot +from tests.test_evaluation import benchmark + + +def marker_file(tmp_path, rows): + path = tmp_path / "markers.csv" + with path.open("w", newline="", encoding="utf-8") as fh: + writer = csv.DictWriter( + fh, fieldnames=["marker_token", "marker_synonyms", "pro_id", "notes"] + ) + writer.writeheader() + writer.writerows(rows) + groups = defaultdict(list) + for row in rows: + groups[row["marker_token"].upper()].append(row) + with marker_resolution.policy_path(path).open( + "w", encoding="utf-8", newline="" + ) as fh: + writer = csv.DictWriter( + fh, fieldnames=marker_resolution.POLICY_FIELDS, delimiter="\t" + ) + writer.writeheader() + for token, records in groups.items(): + ids = {r["pro_id"] for r in records} + allowed = token != "HLA-DR" and len(ids) == 1 and "" not in ids + writer.writerow( + dict( + marker_token=token, + representation="single_protein" + if allowed + else "complex" + if token == "HLA-DR" + else "unresolved", + protein_resolution="allow" if allowed else "withhold", + rationale="Explicit test policy", + source_ref="fixture", + registry_sha256=marker_resolution.signature(records), + ) + ) + return path + + +def marker(token="CCR4", aliases="CD194|CCR4", pro="PR:000001200", notes=""): + return dict(marker_token=token, marker_synonyms=aliases, pro_id=pro, notes=notes) + + +def axiom(**kw): + return dict( + cell="CL:0000001", + cell_label="test cell", + sense="positive", + pr="PR:000001200", + cd_synonym="", + **kw, + ) + + +def cache(tmp_path): + path = tmp_path / "terms.json" + path.write_text( + json.dumps( + { + "schema_version": 1, + "terms": [ + { + "cl_id": "CL:0000002", + "label": "new cell", + "exact_synonyms": ["Novel cell"], + }, + { + "cl_id": "CL:0000003", + "label": "unrelated cell", + "exact_synonyms": [], + }, + ], + } + ) + ) + return path + + +def test_pro_alias_signs_levels(tmp_path): + path = marker_file(tmp_path, [marker()]) + rows = [axiom()] + legacy = cl_match.build_cl_index(rows) + enhanced = cl_match.build_cl_index(rows, path) + assert legacy["CL:0000001"]["positive"] == set() + assert enhanced["CL:0000001"]["positive"] == {"CCR4", "CD194"} + for query in ("CCR4+", "CD194+"): + result = cl_match.score_marker_combinations_row( + {"subject_id": "x", "Required phenotypic markers": query}, enhanced + ) + assert result["candidates"][0]["matched"] + assert ( + result["candidates"][0]["resolution_evidence"][0]["paths"][0]["via"] + == "pro_id" + ) + result = cl_match.score_marker_combinations_row( + {"subject_id": "x", "Required phenotypic markers": "CCR4-"}, enhanced + ) + assert result["candidates"][0]["disqualified"] + assert "CCR4" not in enhanced["CL:0000001"]["high"] + + +def test_ambiguous_complex_and_nonprotein(tmp_path): + path = marker_file( + tmp_path, + [ + marker(), + marker("X", "CD194", "PR:2"), + marker("HLA-DR", "", "PR:3", "heterodimer primary chain"), + marker("MULTI", "", "PR:4"), + marker("MULTI", "", "PR:5"), + marker("LIVE", "", ""), + ], + ) + resolver = ci.marker_resolver(path) + assert "CD194" not in resolver["proteins"]["PR:000001200"] + assert "PR:3" not in resolver["proteins"] + assert "PR:4" not in resolver["proteins"] + assert {x["reason"] for x in resolver["issues"]} == { + "ambiguous_alias", + "policy_withheld", + } + assert ci.expand_axiom({"cd_synonym": "CD194 (exact)"}, resolver)[0] == set() + assert ( + ci.expand_axiom({"cd_synonym": "CCR4 (related); CD194 (broad)"}, resolver)[0] + == set() + ) + assert ci.expand_axiom({"cd_synonym": "CCR4 (exact)"}, resolver)[0] == {"CCR4"} + + +def test_exact_alias_without_pro(tmp_path): + resolver = ci.marker_resolver(marker_file(tmp_path, [marker(pro="")])) + assert ci.expand_axiom({"cd_synonym": "CD194 (label)"}, resolver)[0] == { + "CCR4", + "CD194", + } + assert ci.expand_axiom({"cd_synonym": "CD8 (exact)"}, resolver)[0] == {"CD8"} + + +@pytest.mark.parametrize("rows", [[marker(pro="bad")], [marker(token="")]]) +def test_invalid_registry(tmp_path, rows): + with pytest.raises(ValueError): + ci.marker_resolver(marker_file(tmp_path, rows)) + + +def test_invalid_headers_and_rows(tmp_path): + path = tmp_path / "bad.csv" + path.write_text("x\n") + with pytest.raises(ValueError): + ci.marker_resolver(path) + path.write_text("marker_token,marker_synonyms,pro_id,notes\nA\n") + with pytest.raises(ValueError): + ci.marker_resolver(path) + + +def test_lexical_pool_unknown_axioms_and_no_target_leakage(tmp_path): + index = cl_match.build_cl_index([axiom()], term_cache=cache(tmp_path)) + row = { + "subject_id": "x", + "Full Name": "Novel cell", + "Required phenotypic markers": "CD3+", + "OLS CL identifier": "CL:0000003", + } + result = cl_match.score_marker_combinations_row(row, index, top_n=10) + candidates = {c["cl_id"]: c for c in result["candidates"]} + assert set(candidates) == {"CL:0000001", "CL:0000002"} + assert candidates["CL:0000002"]["lexical_evidence"]["exact"] + assert candidates["CL:0000002"]["matched"] == [] + assert candidates["CL:0000002"]["gaps"] + assert candidates["CL:0000002"]["candidate_sources"] == ["local_lexical"] + assert ci.lexical_candidates({"Full Name": "cell"}, index) == {} + assert ( + ci.lexical_candidates({"Full Name": "new"}, index)["CL:0000002"][ + "token_jaccard" + ] + == 1 + ) + assert len(ci.lexical_candidates({"Full Name": "new"}, index, limit=0)) == 0 + invalid = cl_match.score_marker_combinations_row( + {**row, "Required phenotypic markers": "["}, index + ) + assert invalid["candidates"] == [] + + +def test_cache_extraction(tmp_path): + db = tmp_path / "cl.db" + with sqlite3.connect(db) as c: + c.execute("CREATE TABLE statements(subject TEXT,predicate TEXT,value TEXT)") + c.executemany( + "INSERT INTO statements VALUES (?,?,?)", + [ + ("CL:0000001", "rdfs:label", "A cell"), + ("CL:0000001", "oio:hasExactSynonym", "A"), + ("CL:0000001", "oio:hasBroadSynonym", "ignored"), + ("CL:0000002", "rdfs:label", "old"), + ("CL:0000002", "owl:deprecated", "true"), + ("CL:bad", "rdfs:label", "bad"), + ], + ) + out = tmp_path / "cache.json" + assert ci.cache_main(["--database", str(db), "--out", str(out)]) == 0 + assert list(ci.load_terms(out)) == ["CL:0000001"] + assert ci.load_terms(out)["CL:0000001"]["exact_synonyms"] == ["A"] + with pytest.raises(SystemExit): + ci.cache_main(["--database", str(db), "--out", str(db)]) + data = json.loads(out.read_text()) + for mutation in ( + {"schema_version": 2}, + {"terms": data["terms"] * 2}, + {"terms": [{**data["terms"][0], "exact_synonyms": "bad"}]}, + ): + out.write_text(json.dumps({**data, **mutation})) + with pytest.raises(ValueError): + ci.load_terms(out) + + +def test_evaluation_hashes_and_coverage(snapshot): + markers = marker_file(snapshot, [marker()]) + terms = cache(snapshot) + data = evaluation.evaluate(snapshot, benchmark(snapshot), markers, terms) + assert data["config"]["local_lexical"] + assert data["inputs"]["marker_map"] == evaluation.digest(markers) + assert data["inputs"]["term_cache"] == evaluation.digest(terms) + assert data["candidate_count"] == 3 + source = { + "profile": { + "Required phenotypic markers": "CD3+", + "Full Name": "No lexical overlap", + }, + "profile_changed": False, + "errors": [], + } + index = cl_match.build_cl_index([axiom()], term_cache=terms) + result = evaluation.score_case( + {"subject_id": "x", "targets": ["CL:0000002"]}, source, index + ) + assert result["status"] == "target_not_retrieved" + assert result["missing_targets"] == [] + + +def test_cli_modes_and_dashboard_provenance(snapshot): + markers = marker_file(snapshot, [marker()]) + terms = cache(snapshot) + benchmark(snapshot) + args = [ + "--root", + str(snapshot), + "--marker-map", + str(markers), + "--term-cache", + str(terms), + ] + assert evaluation.main(args) == 0 + # Custom paths are not followed by the dashboard's fixed-path verifier. + assert evaluation.dashboard_evaluation(snapshot)["status"] == "stale_or_unverified" + output = snapshot / "batch.tsv" + assert ( + cl_match.main( + [ + "--batch", + str(snapshot / "data/marker_combinations.csv"), + "--tsv", + str(snapshot / "reports/cl_pro_relationships.tsv"), + "--marker-map", + str(markers), + "--term-cache", + str(terms), + "--batch-out", + str(output), + ] + ) + == 0 + ) + with output.open(encoding="utf-8") as fh: + rows = list(csv.DictReader(fh, delimiter="\t")) + assert rows and "resolution_evidence" in rows[0] + assert ( + cl_match.main( + [ + "--tsv", + str(snapshot / "reports/cl_pro_relationships.tsv"), + "--marker-map", + str(markers), + "--term-cache", + str(terms), + "--req-pheno", + "CD3+", + "--subset", + "new cell", + ] + ) + == 0 + ) + + +def test_empty_cache_database(tmp_path): + db = tmp_path / "empty.db" + with sqlite3.connect(db) as connection: + connection.execute( + "CREATE TABLE statements(subject TEXT,predicate TEXT,value TEXT)" + ) + with pytest.raises(SystemExit): + ci.cache_main(["--database", str(db), "--out", str(tmp_path / "out.json")]) diff --git a/tests/test_cl_match.py b/tests/test_cl_match.py index d72d3b2..3a8170e 100644 --- a/tests/test_cl_match.py +++ b/tests/test_cl_match.py @@ -3,6 +3,7 @@ from __future__ import annotations import csv +import pytest from pathlib import Path from unittest.mock import patch @@ -118,7 +119,7 @@ def test_extract_group_level_qualifier(): def test_extract_skips_unqualified(): # bare marker with no qualifier should be skipped result = cm.extract_signed_markers("CD45") - assert result == [] + assert result == [("CD45", "unknown")] def test_extract_empty_expr(): @@ -126,8 +127,8 @@ def test_extract_empty_expr(): def test_extract_invalid_expr(): - # Should not raise, just return empty - assert cm.extract_signed_markers("((((") == [] + with pytest.raises(cm.MarkerSyntaxError): + cm.extract_signed_markers("((((") # --------------------------------------------------------------------------- # @@ -178,14 +179,9 @@ def test_clauses_group_without_pipe_flattens_like_old_behaviour(): assert not any(isinstance(c, list) for c in result) -def test_clauses_bracket_group_qualifier_falls_back_no_regression(): - # [HLA-DR+ CD11chi]- (De Morgan negation of a compound group) is out of - # scope — must fall back to flattening each leaf with its own qualifier, - # same as extract_signed_markers, not crash or misbehave. +def test_clauses_bracket_group_qualifier_preserves_negation(): result = cm.extract_marker_clauses("[HLA-DR+ CD11chi]-") - assert ("HLA-DR", "positive") in result - assert ("CD11C", "positive") in result - assert not any(isinstance(c, list) for c in result) + assert result == [[("HLA-DR", "not:positive"), ("CD11C", "not:high")]] def test_clauses_skips_gate(): @@ -200,11 +196,13 @@ def test_clauses_empty_expr(): def test_clauses_invalid_expr_does_not_raise(): - assert cm.extract_marker_clauses("((((") == [] + with pytest.raises(cm.MarkerSyntaxError): + cm.extract_marker_clauses("((((") def test_clauses_unbalanced_closing_bracket_does_not_raise(): - assert cm.extract_marker_clauses("CD45+)") is not None + with pytest.raises(cm.MarkerSyntaxError): + cm.extract_marker_clauses("CD45+)") def test_clauses_nested_or_degrades_gracefully_no_crash(): @@ -952,7 +950,7 @@ def test_write_batch_tsv(tmp_path): assert out_path.exists() content = out_path.read_text(encoding="utf-8") assert "CL:0000623" in content - assert content.startswith("abbreviation\t") + assert content.startswith("subject_id\tspecimen\tabbreviation\t") def test_main_batch_writes_tsv(tmp_path, capsys): @@ -1275,7 +1273,7 @@ def test_write_agreement_tsv(tmp_path): out_path = tmp_path / "nested" / "agreement.tsv" cm.write_agreement_tsv(out_path, merged) content = out_path.read_text(encoding="utf-8") - assert content.startswith("abbreviation\t") + assert content.startswith("subject_id\tspecimen\tabbreviation\t") assert "CL:0000623" in content assert "yes" in content diff --git a/tests/test_evaluation.py b/tests/test_evaluation.py new file mode 100644 index 0000000..59f895a --- /dev/null +++ b/tests/test_evaluation.py @@ -0,0 +1,248 @@ +import copy +import csv +import json + +import pytest + +from soulcap_cl_mapping import evaluation as ev +from tests.test_audit import snapshot as snapshot, table + + +def benchmark(root, rows=()): + path = root / "mappings/matcher_benchmark.tsv" + with path.open("w", encoding="utf-8", newline="") as fh: + w = csv.DictWriter(fh, fieldnames=ev.FIELDS, delimiter="\t") + w.writeheader() + w.writerows(rows) + return path + + +def case(**overrides): + return dict( + subject_id="SOULCAP:1", + acceptable_cl_ids="CL:0000001", + match_type="Exact", + review_status="reviewed", + evidence_reference="manual review record", + **overrides, + ) + + +def test_cohorts_and_cli(snapshot): + path = benchmark(snapshot, [case()]) + data = ev.evaluate(snapshot, path) + assert data["metrics"]["reviewed"]["hit_at_1"] == 1 + assert data["metrics"]["provisional"]["cases"] == 1 + assert data["by_relation"]["reviewed/Broad"]["mrr"] is None + before = {p: p.read_bytes() for p in snapshot.rglob("*") if p.is_file()} + assert ev.main(["--root", str(snapshot)]) == 0 + assert all(p.read_bytes() == value for p, value in before.items()) + assert ev.dashboard_evaluation(snapshot)["status"] == "current_local_snapshot" + out = snapshot / "reports/matcher_evaluation.json" + assert ( + ev.main( + [ + "--root", + str(snapshot), + "--baseline", + str(out), + "--out-dir", + str(snapshot / "next"), + ] + ) + == 0 + ) + compared = json.loads((snapshot / "next/matcher_evaluation.json").read_text()) + assert compared["comparison"]["comparable"] + with pytest.raises(SystemExit): + ev.main(["--root", str(snapshot), "--baseline", str(out)]) + assert ( + ev.evaluate(snapshot, benchmark(snapshot))["metrics"]["reviewed"]["mrr"] is None + ) + assert ev.dashboard_evaluation(snapshot)["status"] == "stale_or_unverified" + + +@pytest.mark.parametrize( + "update", + [ + {"subject_id": "unknown"}, + {"match_type": "bad"}, + {"review_status": "needs_review"}, + {"evidence_reference": ""}, + {"acceptable_cl_ids": ""}, + {"acceptable_cl_ids": "CL:0000001|CL:0000001"}, + {"acceptable_cl_ids": "not-cl"}, + ], +) +def test_invalid_benchmark(snapshot, update): + with pytest.raises(ValueError): + ev.evaluate(snapshot, benchmark(snapshot, [{**case(), **update}])) + + +def test_duplicate_and_malformed(snapshot): + with pytest.raises(ValueError, match="Duplicate benchmark"): + ev.evaluate(snapshot, benchmark(snapshot, [case(), case()])) + path = benchmark(snapshot) + path.write_text("bad\n", encoding="utf-8") + with pytest.raises(ValueError, match="columns"): + ev.evaluate(snapshot, path) + path.write_text("\t".join(ev.FIELDS) + "\nSOULCAP:1\n", encoding="utf-8") + with pytest.raises(ValueError, match="Malformed"): + ev.evaluate(snapshot, path) + + +def test_missing_input_and_duplicate_identity(snapshot): + path = benchmark(snapshot) + source = snapshot / ev.INPUTS["source"] + with source.open(encoding="utf-8") as fh: + rows = list(csv.DictReader(fh)) + table(snapshot, "source", rows + [rows[0]]) + with pytest.raises(ValueError, match="identity"): + ev.evaluate(snapshot, path) + source.unlink() + with pytest.raises(ValueError, match="unavailable"): + ev.evaluate(snapshot, path) + + +def test_ranks_ties_multiple_targets_and_failures(): + source = dict( + profile={"Required phenotypic markers": "CD3+"}, + errors=[], + profile_changed=False, + ) + c = dict(subject_id="SOULCAP:1", targets=["CL:0000002", "CL:0000003"]) + index = { + f"CL:{i:07}": dict(label="cell", positive={"CD3"}, negative=set()) + for i in range(1, 7) + } + r = ev.score_case(c, source, index) + assert (r["rank"], r["rank_best"], r["rank_worst"]) == (2, 1, 5) + assert len(r["candidates"]) == 5 + assert ev.metrics([r])["hit_at_1_optimistic"] == 1 + assert ev.metrics([r])["hit_at_1"] == 0 + assert ev.metrics([r])["mrr"] == 0.5 + assert ( + ev.score_case({**c, "targets": ["CL:0000006"]}, source, index)["status"] + == "below_top_5" + ) + assert ( + ev.score_case({**c, "targets": ["CL:9999999"]}, source, index)["status"] + == "target_not_in_index" + ) + assert ev.score_case(c, None, index)["status"] == "missing_source" + assert ( + ev.score_case(c, {**source, "profile_changed": True}, index)["status"] + == "profile_changed" + ) + assert ( + ev.score_case(c, {**source, "profile": {}, "errors": []}, index)["status"] + == "no_candidates" + ) + assert ( + ev.score_case( + c, + { + **source, + "profile": {"Required phenotypic markers": "["}, + "errors": ["bad"], + }, + index, + )["status"] + == "invalid_profile" + ) + index = {"CL:0000002": dict(label="cell", positive=set(), negative={"CD3"})} + r = ev.score_case(c, source, index) + assert r["status"] == "target_disqualified" + assert ev.metrics([r])["top1_disqualified"] == 1 + assert r["target_results"][0]["contradictions"] + + +def test_comparison(snapshot): + data = ev.evaluate(snapshot, benchmark(snapshot)) + old = copy.deepcopy(data) + old["cases"][0]["rank"] = 50 + assert ev.compare(data, old)["changes"][0]["change"] == "improved" + current = copy.deepcopy(data) + current["cases"][0]["rank"] = None + assert ev.compare(current, data)["changes"][0]["change"] == "regressed" + old["inputs"] = {} + assert not ev.compare(data, old)["comparable"] + old["cases"][0]["targets"] = ["CL:1234567"] + assert ev.compare(data, old)["changes"][0]["change"] == "changed_targets" + old["cases"] = [] + assert ev.compare(data, old)["changes"][0]["change"] == "added" + assert ev.compare(old, data)["changes"][0]["change"] == "removed" + old["cases"] = data["cases"] * 2 + with pytest.raises(ValueError, match="Duplicate"): + ev.compare(data, old) + with pytest.raises(ValueError): + ev.compare(data, {}) + + +def test_dashboard_missing_malformed_and_stale(snapshot): + assert ev.dashboard_evaluation(snapshot)["status"] == "unavailable" + path = snapshot / "reports/matcher_evaluation.json" + for value in ("{", "{}", "null", '{"schema_version": 7}'): + path.write_text(value, encoding="utf-8") + assert ev.dashboard_evaluation(snapshot)["status"] == "invalid" + benchmark(snapshot) + ev.main(["--root", str(snapshot)]) + data = json.loads(path.read_text()) + data["matcher"]["source_hashes"]["cl_match.py"] = "old" + path.write_text(json.dumps(data)) + assert ev.dashboard_evaluation(snapshot)["status"] == "stale_or_unverified" + + +def test_empty_cases_and_provisional_override(snapshot): + path = benchmark( + snapshot, + [{**case(), "review_status": "provisional", "acceptable_cl_ids": "CL:0000002"}], + ) + data = ev.evaluate(snapshot, path) + assert data["metrics"]["provisional"]["cases"] == 1 + assert data["cases"][0]["targets"] == ["CL:0000002"] + mapping = snapshot / ev.INPUTS["mappings"] + with mapping.open(encoding="utf-8") as fh: + fields = next(csv.reader(fh, delimiter="\t")) + table(snapshot, "mappings", [], fields=fields) + data = ev.evaluate(snapshot, benchmark(snapshot)) + assert data["cases"] == [] + assert data["metrics"]["provisional"]["hit_at_5"] is None + + +def test_invalid_proposals_and_missing_source(snapshot): + path = benchmark(snapshot) + mapping = snapshot / ev.INPUTS["mappings"] + with mapping.open(encoding="utf-8") as fh: + rows = list(csv.DictReader(fh, delimiter="\t")) + table(snapshot, "mappings", rows * 2) + with pytest.raises(ValueError, match="Duplicate"): + ev.evaluate(snapshot, path) + table(snapshot, "mappings", rows) + source = snapshot / ev.INPUTS["source"] + with source.open(encoding="utf-8") as fh: + rows = list(csv.DictReader(fh)) + table(snapshot, "source", rows[1:]) + assert ev.evaluate(snapshot, path)["cases"][0]["status"] == "missing_source" + + +def test_corrupt_baseline_and_cached_metrics(snapshot): + data = ev.evaluate(snapshot, benchmark(snapshot)) + old = copy.deepcopy(data) + old["cases"][0]["rank"] = -1 + with pytest.raises(ValueError, match="rank"): + ev.compare(data, old) + old["cases"] = ["bad"] + with pytest.raises(ValueError, match="case"): + ev.compare(data, old) + path = snapshot / "reports/matcher_evaluation.json" + for mutate in ( + lambda d: d.update(cases=["bad"]), + lambda d: d["cases"][0].pop("status"), + lambda d: d["metrics"].update(reviewed="bad"), + lambda d: d["metrics"]["provisional"].update(mrr="bad"), + ): + broken = copy.deepcopy(data) + mutate(broken) + path.write_text(json.dumps(broken)) + assert ev.dashboard_evaluation(snapshot)["status"] == "invalid" diff --git a/tests/test_marker_resolution.py b/tests/test_marker_resolution.py new file mode 100644 index 0000000..8a30781 --- /dev/null +++ b/tests/test_marker_resolution.py @@ -0,0 +1,263 @@ +import csv +import json +from pathlib import Path + +import pytest + +from soulcap_cl_mapping import ( + audit, + cl_match, + mapping_evidence, + mapping_export, + marker_resolution as mr, + resolution_audit, +) +from tests.test_candidate_index import marker_file, marker, axiom +from tests.test_audit import snapshot as snapshot, table + + +def test_compatible_duplicate_owners_and_no_double_counting(tmp_path): + path = marker_file(tmp_path, [marker(), marker("CD194", "CCR4|CD194")]) + resolver = mr.load(path) + assert resolver["conflicts"] == set() + assert resolver["canonical"]["CCR4"] == resolver["canonical"]["CD194"] + index = cl_match.build_cl_index([axiom()], resolver=resolver) + profile = { + "subject_id": "SOULCAP:1", + "Required phenotypic markers": "CCR4+ CD194+", + "Ideal phenotypic markers": "CD194+", + } + result = cl_match.score_marker_combinations_row(profile, index)["candidates"][0] + assert result["score"] == 4 + assert len(result["matched"]) == 1 + entry = { + "subject_id": "SOULCAP:1", + "cl_id": "CL:0000001", + "review_status": "needs_review", + } + evidence = mapping_evidence.assess( + entry, profile, [{**axiom(), "asserted": "true"}], resolver=resolver + ) + assert evidence["status"] == "required_markers_supported" + assert len(evidence["matched"]) == 1 + assert evidence["matched"][0]["assertion"] == "direct" + assert evidence["untested_cl_markers"] == [] + assert evidence["resolution_evidence"] + + +def test_distinct_signs_levels_and_or_structure(tmp_path): + resolver = mr.load(marker_file(tmp_path, [marker()])) + req = cl_match.extract_marker_clauses("CCR4+ CD194- CCR4hi (CCR4+|CD194+)") + dedup = mr.deduplicate(req, resolver) + assert len(dedup) == 3 + index = cl_match.build_cl_index([axiom()], resolver=resolver) + scored = cl_match.score_cl_terms(index, req, [])[0] + assert scored["disqualified"] + assert len(scored["contradictions"]) == 1 + assert len(scored["gaps"]) == 1 # positive does not prove high expression + clauses = cl_match.extract_marker_clauses("(CCR4+|CD3+) CCR4+") + assert len(mr.deduplicate(clauses, resolver)) == 2 + + +def test_whole_complex_and_species_identity_not_inferred(tmp_path): + resolver = mr.load( + marker_file( + tmp_path, + [marker("HLA-DR", "", "PR:3", "heterodimer primary chain"), marker()], + ) + ) + assert ( + mr.expand_axiom({"pr": "PR:3", "cd_synonym": "HLA-DR (exact)"}, resolver)[0] + == set() + ) + assert ( + mr.expand_axiom({"pr": "PR:QOTHER", "cd_synonym": "CCR4 (exact)"}, resolver)[0] + == set() + ) + # Exact same-marker statements without component-protein assertions remain explicit evidence. + assert mr.expand_axiom({"cd_synonym": "HLA-DR (exact)"}, resolver)[0] == {"HLA-DR"} + + +def change_policy(path, update): + p = mr.policy_path(path) + with p.open(encoding="utf-8") as fh: + rows = list(csv.DictReader(fh, delimiter="\t")) + update(rows) + with p.open("w", encoding="utf-8", newline="") as fh: + w = csv.DictWriter(fh, fieldnames=mr.POLICY_FIELDS, delimiter="\t") + w.writeheader() + w.writerows(rows) + + +@pytest.mark.parametrize( + "update", + [ + lambda rows: rows.append(rows[0]), + lambda rows: rows[0].update(representation="bad"), + lambda rows: rows[0].update(protein_resolution="guess"), + lambda rows: rows[0].update(rationale=""), + lambda rows: rows[0].update(source_ref=""), + lambda rows: rows[0].update(registry_sha256="stale"), + lambda rows: rows[0].update(marker_token="unknown"), + lambda rows: rows[0].update( + representation="complex", protein_resolution="allow" + ), + lambda rows: rows.clear(), + ], +) +def test_invalid_or_stale_policy_rejected(tmp_path, update): + path = marker_file(tmp_path, [marker()]) + change_policy(path, update) + with pytest.raises(ValueError): + mr.load(path) + + +def test_missing_or_malformed_policy(tmp_path): + path = marker_file(tmp_path, [marker()]) + p = mr.policy_path(path) + p.unlink() + with pytest.raises(FileNotFoundError): + mr.load(path) + p.write_text("bad\n") + with pytest.raises(ValueError): + mr.load(path) + p.write_text("\t".join(mr.POLICY_FIELDS) + "\nCCR4\n") + with pytest.raises(ValueError): + mr.load(path) + + +def test_export_audit_report_consistency(snapshot, tmp_path): + path = marker_file(snapshot, [marker("CD3", "", "PR:0000001")]) + resolver = mr.load(path) + data = audit.build_audit(snapshot, marker_map=path) + assert data["resolution_mode"] == "explicit_marker_policy" + profile = data["sources"][0]["profile"] + entry = {**data["mappings"][0], "subject_label": "A cell"} + axioms = cl_match.load_tsv(snapshot / "reports/cl_pro_relationships.tsv") + expected = mapping_evidence.assess(entry, profile, axioms, resolver=resolver) + rows = mapping_export.build_mapping_rows( + [entry], + profiles={entry["subject_id"]: profile}, + axiom_rows=axioms, + resolver=resolver, + ) + assert ( + json.loads(rows[0]["comment"])["marker_evidence"] + == expected + == data["mappings"][0]["evidence"] + ) + assert ( + resolution_audit.main(["--root", str(snapshot), "--marker-map", str(path)]) == 0 + ) + report = json.loads((snapshot / "reports/marker_resolution_audit.json").read_text()) + assert report["summary"]["normalized_markers"] == 1 + assert report["mapping_comparisons"][0]["enhanced_evidence"] == expected + out = snapshot / "enhanced" + assert ( + audit.main( + ["--root", str(snapshot), "--marker-map", str(path), "--out-dir", str(out)] + ) + == 0 + ) + assert ( + mapping_export.main(["--marker-map", str(path)]) == 1 + ) # protect default export + mr.policy_path(path).unlink() + with pytest.raises(SystemExit): + audit.main(["--root", str(snapshot), "--marker-map", str(path)]) + with pytest.raises(SystemExit): + resolution_audit.main(["--root", str(snapshot), "--marker-map", str(path)]) + + +def test_audit_distinguishes_export_resolution_modes(snapshot): + path = marker_file(snapshot, [marker("CD3", "", "PR:0000001")]) + original = audit.build_audit(snapshot) + m = original["mappings"][0] + table( + snapshot, + "export", + [ + { + "subject_id": m["subject_id"], + "object_id": m["cl_id"], + "predicate_id": "skos:exactMatch", + "comment": json.dumps({"marker_evidence": m["evidence"]}), + } + ], + ) + enhanced = audit.build_audit(snapshot, marker_map=path) + assert enhanced["provenance"]["export_evidence"] == "different_resolution_mode" + assert not any(f["code"] == "export_evidence_drift" for f in enhanced["findings"]) + + +ROOT = Path(__file__).resolve().parents[1] +EVIDENCE_CASES = json.loads( + (ROOT / "mappings/marker_assertion_benchmark.json").read_text(encoding="utf-8") +)["cases"] + + +@pytest.mark.parametrize("case", EVIDENCE_CASES, ids=lambda c: c["case_id"]) +def test_reviewed_marker_assertion_constraints(case): + resolver = mr.load(ROOT / "marker_mappings/marker_protein_gene.csv") + tokens, paths = mr.expand_axiom(case["axiom"], resolver) + assert tokens == set(case["expected_tokens"]) + assert [p["via"] for p in paths] == ( + [case["expected_path"]] if case["expected_path"] else [] + ) + assert resolver["policies"]["CD8"]["protein_resolution"] == "withhold" + assert "PR:000025402" not in resolver["proteins"] + + +@pytest.mark.parametrize( + "change", + [ + {"cd_synonym": "CD8 (related)"}, + {"cd_synonym": "CD8 (broad)"}, + {"cd_synonym": "CD8"}, + {"cd_synonym": ""}, + {"cd_synonym": "CD8A (exact)"}, + {"pr": "PR:unknown"}, + {"relation": "CL:4030046", "sense": "negative"}, + {"sense": "high"}, + {"relation": ""}, + ], +) +def test_whole_cd8_exception_is_narrow(change): + resolver = mr.load(ROOT / "marker_mappings/marker_protein_gene.csv") + row = {**EVIDENCE_CASES[0]["axiom"], **change} + tokens, paths = mr.expand_axiom(row, resolver) + assert "CD8" not in tokens + assert not any(p["via"] == "reviewed_surface_assertion" for p in paths) + + +@pytest.mark.parametrize( + "asserted,expected", [("True", "direct"), ("False", "inferred")] +) +def test_whole_cd8_preserves_assertion_provenance(asserted, expected): + resolver = mr.load(ROOT / "marker_mappings/marker_protein_gene.csv") + row = { + **EVIDENCE_CASES[0]["axiom"], + "cell": "CL:0000625", + "cell_label": "CD8-positive, alpha-beta T cell", + "asserted": asserted, + } + result = mapping_evidence.assess( + {"cl_id": row["cell"]}, + {"Required phenotypic markers": "CD8+"}, + [row], + resolver=resolver, + ) + assert result["matched"][0]["assertion"] == expected + path = result["resolution_evidence"][0] + assert path["relation"] == "RO:0002104" + assert ( + path["paths"][0]["interpretation"] + == "marker_assertion_not_molecular_equivalence" + ) + assert mr.expand_axiom(row, resolver)[0] == {"CD8"} # No alias propagation. + + +def test_surface_exception_cannot_override_alias_conflict(): + resolver = mr.load(ROOT / "marker_mappings/marker_protein_gene.csv") + resolver["conflicts"].add("CD8") + assert mr.expand_axiom(EVIDENCE_CASES[0]["axiom"], resolver) == (set(), []) diff --git a/tests/test_marker_syntax.py b/tests/test_marker_syntax.py index 831295c..053d540 100644 --- a/tests/test_marker_syntax.py +++ b/tests/test_marker_syntax.py @@ -333,6 +333,15 @@ def test_tokens_main_missing_csv(tmp_path, capsys): assert "not found" in capsys.readouterr().out +def test_tokens_main_invalid_source_preserves_output(tmp_path): + source = tmp_path / "bad.csv" + source.write_text("Abbreviation,Required phenotypic markers\nNK,CD56+)\n") + out = tmp_path / "tokens.csv" + out.write_text("existing curated tokens\n") + assert ms.tokens_main([str(source), "--out", str(out)]) == 1 + assert out.read_text() == "existing curated tokens\n" + + def test_tokens_main_creates_output_dir(tmp_path): csv = tmp_path / "mc.csv" _write_markers_csv(csv) diff --git a/tests/test_phenotype.py b/tests/test_phenotype.py new file mode 100644 index 0000000..c891920 --- /dev/null +++ b/tests/test_phenotype.py @@ -0,0 +1,124 @@ +"""Semantic regressions: compare Boolean formulas, not parser internals.""" + +import itertools + +import pytest + +from soulcap_cl_mapping import cl_match, phenotype as p +from soulcap_cl_mapping.marker_syntax import ( + MarkerSyntaxError, + parse_expression, + extract_markers, +) + + +def satisfied(expr, entry): + states = [] + for clause in p.clauses(expr): + alternatives = [clause] if isinstance(clause, tuple) else clause + values = [p.evaluate(m, s, entry) for m, s in alternatives] + states.append( + "matched" + if "matched" in values + else "contradicted" + if all(v == "contradicted" for v in values) + else "gap" + ) + return ( + "contradicted" + if "contradicted" in states + else "matched" + if all(v == "matched" for v in states) + else "gap" + ) + + +@pytest.mark.parametrize("a,b,c", list(itertools.product([False, True], repeat=3))) +def test_nested_boolean_truth_table(a, b, c): + entry = { + "positive": {m for m, v in zip("ABC", (a, b, c)) if v}, + "negative": {m for m, v in zip("ABC", (a, b, c)) if not v}, + } + assert (satisfied("[(A+|B+) C+]-", entry) == "matched") == (not ((a or b) and c)) + assert (satisfied("((A+ B+)|C+)", entry) == "matched") == ((a and b) or c) + + +@pytest.mark.parametrize( + "expr,level,want", + [ + ("CD16-/lo", "low", "matched"), + ("CD16-/lo", "negative", "matched"), + ("CD16-/lo", "high", "contradicted"), + ("CD16lo", "negative", "contradicted"), + ("CD16int", "positive", "gap"), + ("CD16hi", "low", "contradicted"), + ("CD16+", "low", "matched"), + ("CD16+/-", "high", "contradicted"), + ("CD16+/-", "negative", "matched"), + ("CD16+/-", "low", "matched"), + ("[CD16hi]-", "positive", "gap"), + ("[CD16hi]-", "low", "matched"), + ("CD16int", "intermediate", "matched"), + ], +) +def test_expression_levels(expr, level, want): + assert satisfied(expr, {level: {"CD16"}}) == want + + +def test_unknown_under_negation_and_inconsistent_axioms(): + assert satisfied("[CD16+]-", {}) == "gap" + assert satisfied("CD16+", {"positive": {"CD16"}, "negative": {"CD16"}}) == "gap" + assert satisfied("CD16hi", {"high": {"CD16"}, "low": {"CD16"}}) == "gap" + + +def test_ast_is_shared_and_unqualified_markers_remain_unknown(): + expr = " live/ [(CD3+|CD4lo) CD8]- " + assert ( + parse_expression(expr).markers() + == extract_markers(expr) + == {"CD3", "CD4", "CD8"} + ) + assert satisfied("CD8", {"positive": {"CD8"}}) == "gap" + assert extract_markers("CD3+ (CD4-") == set() + + +def test_undefined_group_levels_are_flagged(): + parse_expression("[CD3+ CD4+]hi") # valid grammar, undefined biology + with pytest.raises(MarkerSyntaxError, match="clarification"): + p.clauses("[CD3+ CD4+]hi") + + +def test_boolean_expansion_is_bounded(): + expr = "(" + "|".join("(A+ B+)" for _ in range(9)) + ")" + with pytest.raises(MarkerSyntaxError, match="limit"): + p.clauses(expr) + with pytest.raises(MarkerSyntaxError, match="limit"): + p.clauses(" ".join(["A+"] * 257)) + + +def test_invalid_batch_profile_abstains_even_with_valid_other_columns(): + row = { + "Abbreviation": "NK", + "Required phenotypic markers": "CD56+", + "Ideal exclusion": "CD3+)", + } + result = cl_match.score_marker_combinations_row( + row, {"CL:1": {"label": "cell", "positive": {"CD56"}, "negative": set()}} + ) + assert result["candidates"] == [] + assert "Ideal exclusion" in result["note"] + + +def test_intermediate_axiom_survives_index_and_ranking(): + index = cl_match.build_cl_index( + [ + { + "cell": "CL:1", + "cell_label": "cell", + "sense": "intermediate", + "cd_synonym": "CD123 (exact)", + } + ] + ) + result = cl_match.score_cl_terms(index, p.clauses("CD123int"), [])[0] + assert result["matched"] and not result["contradictions"] diff --git a/tests/test_registry.py b/tests/test_registry.py new file mode 100644 index 0000000..1862e44 --- /dev/null +++ b/tests/test_registry.py @@ -0,0 +1,90 @@ +import csv + +import pytest + +from soulcap_cl_mapping import registry as r, cl_match, mapping_evidence + + +def test_registry_ids_are_unique_and_do_not_depend_on_order(): + rows = r.read_table(r.DEFAULT_IDENTITIES) + assert len(rows) == len({row["subject_id"] for row in rows}) == 127 + index = r.entity_index() + unique = {"Abbreviation": "NK"} + assert r.row_id(unique, index) == r.row_id( + unique, dict(reversed(list(index.items()))) + ) + assert ( + r.row_id({**unique, "Required phenotypic markers": "CD3-"}, index) + == "SOULCAP:SC000001" + ) + + +def test_duplicate_abbreviations_are_disambiguated_by_specimen(): + a = r.row_id({"Abbreviation": "Basophil", "WB or PBMC": "WB"}) + b = r.row_id({"Abbreviation": "Basophil", "WB or PBMC": "PBMC"}) + assert a != b and a.startswith("SOULCAP:") and b.startswith("SOULCAP:") + + +def test_ambiguous_identity_changes_are_not_silently_assigned(): + assert r.row_id({"Abbreviation": "Th9-like"}).startswith("unregistered:") + assert r.row_id({"Abbreviation": "renamed"}).startswith("unregistered:") + assert ( + r.row_id({"subject_id": "SOULCAP:SC000001", "Abbreviation": "renamed"}) + == "SOULCAP:SC000001" + ) + + +def test_duplicate_profile_identity_rejected(): + with pytest.raises(ValueError, match="Duplicate source"): + mapping_evidence.profile_index([{"Abbreviation": "NK"}] * 2) + + +def test_lexical_merge_joins_stable_ids(): + def result(sid, target): + return dict( + subject_id=sid, + abbreviation="same", + full_name="cell", + parent="", + type_of_match="", + existing_cl_id="", + note="", + candidates=[dict(cl_id=target, label="cell", score=1, contradictions=[])], + ) + + a, b = result("SOULCAP:SC000015", "CL:1"), result("SOULCAP:SC000016", "CL:2") + merged = cl_match.merge_marker_and_lexical([a, b], [b, a]) + assert all(row["agreement"] == "yes" for row in merged) + a["candidates"][0]["disqualified"] = True + assert cl_match.merge_marker_and_lexical([a], [a])[0]["agreement"] == "no" + with pytest.raises(ValueError, match="Duplicate lexical"): + cl_match.merge_marker_and_lexical([a], [a, a]) + + +def test_registry_validation(tmp_path): + path = tmp_path / "entities.tsv" + row = r.read_table(r.DEFAULT_IDENTITIES)[0] + with path.open("w", newline="") as fh: + w = csv.DictWriter(fh, fieldnames=list(row), delimiter="\t") + w.writeheader() + w.writerows([row, row]) + with pytest.raises(ValueError, match="Duplicate entity"): + r.entity_index(path) + + +@pytest.mark.parametrize( + "change,error", + [ + ({"subject_id": "SOULCAP:unknown"}, "unknown subject"), + ({"match_type": "Wrong"}, "Unknown match type"), + ], +) +def test_mapping_registry_rejects_invalid_entries(tmp_path, change, error): + row = {**r.read_table(r.DEFAULT_MAPPINGS)[0], **change} + path = tmp_path / "mappings.tsv" + with path.open("w", newline="", encoding="utf-8") as fh: + w = csv.DictWriter(fh, fieldnames=list(row), delimiter="\t") + w.writeheader() + w.writerow(row) + with pytest.raises(ValueError, match=error): + r.load_mappings(path) diff --git a/tests/test_regression_triage.py b/tests/test_regression_triage.py new file mode 100644 index 0000000..bc4f9ff --- /dev/null +++ b/tests/test_regression_triage.py @@ -0,0 +1,81 @@ +import copy +import json + +import pytest + +from soulcap_cl_mapping import regression_triage as triage +from tests.test_audit import snapshot as snapshot +from tests.test_candidate_index import marker_file, marker +from tests.test_evaluation import benchmark + + +def test_factorization_and_fixed_pool(): + old = {"CL:1": {"label": "cell", "positive": {"A", "B"}, "negative": set()}} + new = { + "CL:1": { + "label": "cell", + "positive": {"B", "C"}, + "negative": set(), + "resolver": {"canonical": {}}, + } + } + saved = copy.deepcopy((old, new)) + assert triage.ablation_index(old, new, (1, 0, 0))["CL:1"]["positive"] == { + "A", + "B", + "C", + } + assert triage.ablation_index(old, new, (0, 1, 0))["CL:1"]["positive"] == {"B"} + assert triage.ablation_index(old, new, (1, 1, 1))["CL:1"]["positive"] == {"B", "C"} + assert "resolver" not in triage.ablation_index(old, new, (0, 0, 0))["CL:1"] + assert "resolver" in triage.ablation_index(old, new, (0, 0, 1))["CL:1"] + assert (old, new) == saved + with pytest.raises(ValueError): + triage.ablation_index(old, {}, (0, 0, 0)) + with pytest.raises(ValueError): + triage.ablation_index(old, {"CL:1": {"label": "other"}}, (0, 0, 0)) + + +def test_report_and_cli_preserve_inputs(snapshot): + path = marker_file(snapshot / "marker_mappings", [marker("CD3", "", "PR:0000001")]) + path.replace(snapshot / "marker_mappings/marker_protein_gene.csv") + benchmark(snapshot) + before = {p: p.read_bytes() for p in snapshot.rglob("*") if p.is_file()} + data = triage.build(snapshot) + assert data["endpoint_checks"] == "passed" + assert len(data["metrics"]) == 8 + assert data["candidate_count"] == 1 + assert len(data["cases"][0]["factor_edges"]) == 12 + assert data["metrics"]["000"]["reviewed"]["mrr"] is None + assert triage.main(["--root", str(snapshot)]) == 0 + assert all(p.read_bytes() == b for p, b in before.items()) + assert ( + json.loads( + (snapshot / "reports/regression-triage/regression_triage.json").read_text() + )["endpoint_checks"] + == "passed" + ) + assert "Interpretation limits" in triage.render(data) + # Exercise boundary presentation independent of actual fixture ranks. + c = data["cases"][0] + c.update(lost_top5=True, outcome="regressed") + assert "Lost top-five" in triage.render(data) + c.update(lost_top5=False, gained_top5=True) + assert "Gained top-five" in triage.render(data) + (snapshot / "data/marker_combinations.csv").unlink() + with pytest.raises(SystemExit): + triage.main(["--root", str(snapshot)]) + + +def test_evidence_changes_and_hits(): + resolver = { + "owners": {"A": {"A"}}, + "policies": {"A": {"protein_resolution": "withhold"}}, + "conflicts": {"A"}, + } + changes = triage.token_changes({"positive": {"A"}}, {"positive": {"B"}}, resolver) + assert {c["action"] for c in changes} == {"added", "removed"} + assert next(c for c in changes if c["token"] == "A")["conflicting_alias"] + assert triage.hit({"rank": 5}) + assert not triage.hit({"rank": None}) + assert not triage.hit({"rank": 6}) diff --git a/tests/test_sssom_export.py b/tests/test_sssom_export.py index 9887822..2ad4557 100644 --- a/tests/test_sssom_export.py +++ b/tests/test_sssom_export.py @@ -1,304 +1,202 @@ -"""Tests for soulcap_cl_mapping.sssom_export.""" +"""Regression tests for registry-backed mapping exports.""" from __future__ import annotations import csv -from pathlib import Path +import json +import pytest + +from soulcap_cl_mapping import mapping_evidence as me +from soulcap_cl_mapping import registry from soulcap_cl_mapping import sssom_export as se -# --------------------------------------------------------------------------- # -# Helpers -# --------------------------------------------------------------------------- # -_TSV_FIELDS = [ - "cell", - "cell_label", - "sense", - "asserted", - "pr", - "pr_label", - "cd_synonym", -] - - -def _make_tsv(rows: list[dict], tmp_path: Path) -> Path: - path = tmp_path / "cl_pro.tsv" - with path.open("w", encoding="utf-8", newline="") as fh: - writer = csv.DictWriter(fh, fieldnames=_TSV_FIELDS, delimiter="\t") - writer.writeheader() - for row in rows: - writer.writerow(row) - return path + +def decision(**kw): + return { + "subject_id": "SOULCAP:SC000001", + "abbreviation": "NK", + "subject_label": "NK", + "cl_id": "CL:1", + "cl_label": "cell", + "match_type": "Exact", + **kw, + } -def _row(cell: str, asserted: str) -> dict: +def axiom(marker="CD56", sense="positive", asserted="True", cell="CL:1"): return { "cell": cell, - "cell_label": "x", - "sense": "positive", + "cell_label": "cell", + "sense": sense, "asserted": asserted, - "pr": "", - "pr_label": "", - "cd_synonym": "", + "cd_synonym": marker + " (exact)", + "pr": "PR:000001024", + "relation": "RO:0002104", } -# --------------------------------------------------------------------------- # -# load_assertion_status -# --------------------------------------------------------------------------- # -def test_load_assertion_status_confirmed(tmp_path): - tsv = _make_tsv([_row("CL:1", "True")], tmp_path) - status = se.load_assertion_status(tsv) - assert status["CL:1"] is True +def evidence(entry=None, expr="CD56+", axioms=None, **columns): + return me.assess( + entry or decision(), + {"Required phenotypic markers": expr, **columns}, + axioms if axioms is not None else [axiom()], + ) -def test_load_assertion_status_inferred_only(tmp_path): - tsv = _make_tsv([_row("CL:1", "False")], tmp_path) - status = se.load_assertion_status(tsv) - assert status["CL:1"] is False +def test_unrelated_asserted_axiom_cannot_confirm_mapping(): + ev = evidence(axioms=[axiom("CD3")]) + assert ev["status"] == "no_marker_support" + assert ev["matched"] == [] + assert ev["gaps"] + assert ev["untested_cl_markers"] == ["CD3"] -def test_load_assertion_status_any_true_wins(tmp_path): - tsv = _make_tsv([_row("CL:1", "False"), _row("CL:1", "True")], tmp_path) - status = se.load_assertion_status(tsv) - assert status["CL:1"] is True +def test_direct_and_inferred_support_are_per_clause(): + ev = evidence( + expr="CD56+ CD3-", axioms=[axiom(), axiom("CD3", "negative", "False")] + ) + assert ev["status"] == "required_markers_supported" + assert [m["assertion"] for m in ev["matched"]] == ["direct", "inferred"] + assert ev["matched"][0]["axioms"][0]["pr"] == "PR:000001024" -def test_load_assertion_status_missing_cl_id_absent(tmp_path): - tsv = _make_tsv([_row("CL:1", "True")], tmp_path) - status = se.load_assertion_status(tsv) - assert "CL:999" not in status +def test_sheet_confirmation_preserved_without_overriding_conflict(): + entry = decision( + evidence_override="sheet_confirmed", + curator_evidence="Confirmed in master Google Sheet", + ) + profile = {"Required phenotypic markers": "CD56-", "OLS CL identifier": "CL:1"} + rows = se.build_mapping_rows( + [entry], + {"CL:1": True}, + profiles={entry["subject_id"]: profile}, + axiom_rows=[axiom()], + ) + details = json.loads(rows[0]["comment"]) + assert details["marker_evidence"]["status"] == "contradicted" + assert details["marker_evidence"]["sheet_confirmation"] == "agrees" + assert "master Google Sheet" in details["marker_evidence"]["curator_evidence"] + assert details["legacy_evidence_override"] == "sheet_confirmed" + assert "confidence" not in rows[0] -# --------------------------------------------------------------------------- # -# classify_evidence -# --------------------------------------------------------------------------- # -def test_classify_evidence_confirmed(): - assert se.classify_evidence("CL:1", {"CL:1": True}) == "confirmed" +def test_partial_ideal_conflict_and_unknown_are_distinct(): + ev = evidence(expr="CD56+ CD19-", **{"Ideal exclusion": "CD56-"}) + assert ev["status"] == "partial_support" + assert ev["ideal_conflicts"] and ev["gaps"] + assert not ev["contradictions"] -def test_classify_evidence_inferred_only(): - assert se.classify_evidence("CL:1", {"CL:1": False}) == "inferred_only" +def test_malformed_profile_is_not_partially_scored(): + ev = evidence(expr="CD56+ (CD3-") + assert ev["status"] == "invalid_profile" + assert ev["errors"] and not ev["matched"] -def test_classify_evidence_no_marker_axiom(): - assert se.classify_evidence("CL:999", {"CL:1": True}) == "no_marker_axiom" +def test_missing_profile_and_term_inventory_are_not_support(): + rows = se.build_mapping_rows([decision()], {"CL:1": True}) + assert ( + json.loads(rows[0]["comment"])["marker_evidence"]["status"] == "missing_profile" + ) + assert "confidence" not in rows[0] -# --------------------------------------------------------------------------- # -# build_mapping_rows -# --------------------------------------------------------------------------- # -def test_build_mapping_rows_confirmed_exact_confidence(): - curated = [ - { - "abbreviation": "X", - "subject_label": "X cell", - "cl_id": "CL:1", - "cl_label": "x cell", - "match_type": "Exact", - } - ] - rows = se.build_mapping_rows(curated, {"CL:1": True}) - r = rows[0] - assert r["confidence"] == 0.9 - assert r["predicate_id"] == "skos:exactMatch" - assert r["mapping_cardinality"] == "1:1" - assert "directly-asserted" in r["comment"] - - -def test_build_mapping_rows_inferred_only_lower_confidence(): - curated = [ - { - "abbreviation": "X", - "subject_label": "X cell", - "cl_id": "CL:1", - "cl_label": "x cell", - "match_type": "Exact", - } - ] - rows = se.build_mapping_rows(curated, {"CL:1": False}) - r = rows[0] - assert r["confidence"] == 0.6 - assert "inferred" in r["comment"].lower() - - -def test_build_mapping_rows_no_marker_axiom_lowest_confirmed_tier(): - curated = [ - { - "abbreviation": "X", - "subject_label": "X cell", - "cl_id": "CL:999", - "cl_label": "x cell", - "match_type": "Exact", - } - ] - rows = se.build_mapping_rows(curated, {"CL:1": True}) - r = rows[0] - assert r["confidence"] == 0.55 - assert "no marker axiom" in r["comment"].lower() - - -def test_build_mapping_rows_broad_match_lower_than_exact(): - curated_exact = [ - { - "abbreviation": "X", - "subject_label": "X", - "cl_id": "CL:1", - "cl_label": "x", - "match_type": "Exact", - } - ] - curated_broad = [ - { - "abbreviation": "Y", - "subject_label": "Y", - "cl_id": "CL:1", - "cl_label": "x", - "match_type": "Broad", - } - ] - exact_conf = se.build_mapping_rows(curated_exact, {"CL:1": True})[0]["confidence"] - broad_conf = se.build_mapping_rows(curated_broad, {"CL:1": True})[0]["confidence"] - assert broad_conf < exact_conf - - -def test_build_mapping_rows_uncertain_caps_confidence(): - curated = [ - { - "abbreviation": "X", - "subject_label": "X", - "cl_id": "CL:1", - "cl_label": "x", - "match_type": "Exact", - "uncertain": True, - } - ] - rows = se.build_mapping_rows(curated, {"CL:1": True}) - assert rows[0]["confidence"] == se.UNCERTAIN_CONFIDENCE_CAP - - -def test_build_mapping_rows_evidence_override_takes_precedence(): - curated = [ - { - "abbreviation": "X", - "subject_label": "X", - "cl_id": "CL:1", # confirmed in the TSV lookup... - "cl_label": "x", - "match_type": "Exact", - "evidence_override": "no_marker_axiom", # ...but match wasn't marker-based - } - ] - rows = se.build_mapping_rows(curated, {"CL:1": True}) - assert rows[0]["confidence"] == 0.55 - - -def test_build_mapping_rows_note_prepended_to_comment(): - curated = [ - { - "abbreviation": "X", - "subject_label": "X", - "cl_id": "CL:1", - "cl_label": "x", - "match_type": "Exact", - "note": "Custom caveat text.", - } - ] - rows = se.build_mapping_rows(curated, {"CL:1": True}) - assert rows[0]["comment"].startswith("Custom caveat text.") - - -def test_build_mapping_rows_cardinality_n_to_1(): - curated = [ - { - "abbreviation": "A", - "subject_label": "A", - "cl_id": "CL:SHARED", - "cl_label": "shared", - "match_type": "Exact", - }, - { - "abbreviation": "B", - "subject_label": "B", - "cl_id": "CL:SHARED", - "cl_label": "shared", - "match_type": "Exact", - }, - ] - rows = se.build_mapping_rows(curated, {"CL:SHARED": True}) - assert all(r["mapping_cardinality"] == "n:1" for r in rows) - - -def test_build_mapping_rows_subject_id_format(): - curated = [ - { - "abbreviation": "Basophil (PBMC)", - "subject_label": "Basophil", - "cl_id": "CL:1", - "cl_label": "x", - "match_type": "Exact", - } +def test_empty_profile_has_no_marker_support(): + assert evidence(expr="")["status"] == "no_marker_support" + + +def test_negated_unknown_is_unknown(): + ev = evidence(expr="[CD3+ CD19+]-", axioms=[]) + assert ev["status"] == "no_marker_support" + assert ev["gaps"] + + +def test_evidence_only_uses_target_cl_term(): + assert evidence(axioms=[axiom(cell="CL:2")])["status"] == "no_marker_support" + + +@pytest.mark.parametrize( + "match,predicate", + [ + ("Exact", "exactMatch"), + ("Broad", "broadMatch"), + ("Narrow", "narrowMatch"), + ("Related", "relatedMatch"), + ], +) +def test_predicates_preserve_direction(match, predicate): + assert ( + se.build_mapping_rows([decision(match_type=match)])[0]["predicate_id"] + == "skos:" + predicate + ) + + +def test_cardinality_handles_both_directions(): + entries = [ + decision(), + decision(subject_id="SOULCAP:SC000002"), + decision(cl_id="CL:2"), ] - rows = se.build_mapping_rows(curated, {"CL:1": True}) - assert rows[0]["subject_id"] == "SOULCAP:Basophil_(PBMC)" + rows = se.build_mapping_rows(entries) + assert [r["mapping_cardinality"] for r in rows] == ["n:n", "n:1", "1:n"] + + +def test_subject_id_survives_display_name_change(): + a = se.build_mapping_rows([decision()])[0] + b = se.build_mapping_rows( + [decision(abbreviation="renamed", subject_label="renamed")] + )[0] + assert a["subject_id"] == b["subject_id"] + + +def test_registry_migration_preserves_80_decisions_and_local_notes(): + entries = registry.load_mappings() + assert len(entries) == 80 + assert len({r["subject_id"] for r in entries}) == 80 + assert sum(r["match_type"] == "Exact" for r in entries) == 50 + assert sum(r["uncertain"] for r in entries) == 8 + confirmations = [r for r in entries if r["evidence_override"] == "sheet_confirmed"] + assert {r["abbreviation"] for r in confirmations} == { + "Mono", + "CMo", + "NCMo", + "IntMo", + } + assert all( + r["curator_evidence"] and "Sheet-confirmed" in r["note"] for r in confirmations + ) -# --------------------------------------------------------------------------- # -# write_sssom -# --------------------------------------------------------------------------- # -def test_write_sssom_creates_valid_file(tmp_path): - rows = se.build_mapping_rows( - [ - { - "abbreviation": "X", - "subject_label": "X cell", - "cl_id": "CL:1", - "cl_label": "x cell", - "match_type": "Exact", - } - ], - {"CL:1": True}, +def test_export_writes_sssom_review_and_provenance(tmp_path): + source = tmp_path / "source.csv" + source.write_text( + "Abbreviation,Parent,WB or PBMC,Required phenotypic markers\nNK,,,CD56+\n" ) - out_path = tmp_path / "nested" / "out.sssom.tsv" - se.write_sssom(out_path, rows) - assert out_path.exists() - content = out_path.read_text(encoding="utf-8") - assert "curie_map" in content - assert "SOULCAP:X" in content - assert "subject_id" in content - - -# --------------------------------------------------------------------------- # -# CURATED_MAPPINGS sanity checks (guards against typos when hand-editing) -# --------------------------------------------------------------------------- # -def test_curated_mappings_all_have_required_fields(): - required = {"abbreviation", "subject_label", "cl_id", "cl_label", "match_type"} - for entry in se.CURATED_MAPPINGS: - assert required <= entry.keys() - assert entry["match_type"] in ("Exact", "Broad") - assert entry["cl_id"].startswith("CL:") - - -def test_curated_mappings_build_without_error(): - rows = se.build_mapping_rows(se.CURATED_MAPPINGS, {}) - assert len(rows) == len(se.CURATED_MAPPINGS) - - -# --------------------------------------------------------------------------- # -# CLI -# --------------------------------------------------------------------------- # -def test_main_missing_tsv(tmp_path, capsys): - rc = se.main( - ["--tsv", str(tmp_path / "missing.tsv"), "--out", str(tmp_path / "out.tsv")] + axioms = tmp_path / "axioms.tsv" + with axioms.open("w", newline="") as fh: + writer = csv.DictWriter(fh, fieldnames=list(axiom()), delimiter="\t") + writer.writeheader() + writer.writerow(axiom()) + out = tmp_path / "out.sssom.tsv" + assert ( + se.main(["--source", str(source), "--tsv", str(axioms), "--out", str(out)]) == 0 ) - assert rc == 1 - assert "not found" in capsys.readouterr().err - - -def test_main_writes_output(tmp_path, capsys): - tsv = _make_tsv([_row("CL:0000623", "True")], tmp_path) - out_path = tmp_path / "out.sssom.tsv" - rc = se.main(["--tsv", str(tsv), "--out", str(out_path)]) - assert rc == 0 - assert out_path.exists() - out = capsys.readouterr().out - assert "Wrote" in out + assert "SOULCAP:SC000001" in out.read_text() + assert out.with_suffix(".md").exists() + assert len(json.loads(out.with_suffix(".provenance.json").read_text())) == 4 + + +def test_export_missing_input_fails(tmp_path, capsys): + assert se.main(["--source", str(tmp_path / "missing.csv")]) == 1 + assert "error:" in capsys.readouterr().err + + +def test_legacy_inventory_helpers_are_still_available(tmp_path): + path = tmp_path / "axioms.tsv" + path.write_text("cell\tasserted\nCL:1\tFalse\nCL:1\tTrue\nCL:2\tFalse\n\tTrue\n") + status = se.load_assertion_status(path) + assert status == {"CL:1": True, "CL:2": False} + assert se.classify_evidence("CL:1", status) == "confirmed" + assert se.classify_evidence("CL:2", status) == "inferred_only" + assert se.classify_evidence("CL:3", status) == "no_marker_axiom"