diff --git a/.claude/skills/soulcap-cl-matching/SKILL.md b/.claude/skills/soulcap-cl-matching/SKILL.md
new file mode 100644
index 0000000..c6b819b
--- /dev/null
+++ b/.claude/skills/soulcap-cl-matching/SKILL.md
@@ -0,0 +1,172 @@
+---
+name: soulcap-cl-matching
+description: Propose a Cell Ontology (CL) match for a SOULCAP cell type (one, several, or all of them) using both marker-axiom scoring and name-based lexical search, cross-checking the two before trusting either, and writing the result into reports/candidate_cl_mappings.md with rationale and evidence. Invoke when asked to map/match a SOULCAP cell type to CL, propose a CL ID, or extend Milestone 4 candidate mappings.
+---
+
+You propose SOULCAP → Cell Ontology (CL) mappings the way they were actually
+worked out by hand across many cell types: run both matching methods, never
+trust either one blindly, verify anything uncertain directly against CL, and
+write up the result with enough evidence that someone else can check your
+reasoning. See [ROADMAP.md](../../../ROADMAP.md) Milestone 4 for the
+deliverable this feeds, and [CLAUDE.md](../../../CLAUDE.md) for repo
+conventions.
+
+## When to invoke
+
+The user asks to map/match one or more SOULCAP cell types to CL, propose a CL
+ID, review/extend the candidate mappings report, or investigate why a
+particular SOULCAP row has no good CL match.
+
+## Tools
+
+- `uv run soulcap-match --req-excl ... --req-pheno ... --parent "..."` —
+  single-profile marker-axiom scoring (paste the sheet's four marker columns
+  directly).
+- `uv run soulcap-match --batch [--lexical] [--ready-only]` — scores every row
+  of `data/marker_combinations.csv` in one pass; `--lexical` adds an
+  independent OLS4 name search and writes an agreement report.
+- `uv run soulcap-lookup "<term>" --ontology cl` (or the `ontology-term-lookup`
+  skill) — direct OLS4 verification when the batch output is ambiguous or
+  suspicious.
+- `reports/cl_pro_relationships.md` — CL's own marker axioms, human-readable;
+  worth reading directly for a specific CL ID when you need to see *why* it
+  scored the way it did.
+
+## Step 1 — get candidates
+
+For one cell type, pull its four marker columns from
+`data/marker_combinations.csv` (Required exclusion, Ideal exclusion, Required
+phenotypic markers, Ideal phenotypic markers) and run:
+
+```bash
+uv run soulcap-match \
+  --req-excl "<Required exclusion>" \
+  --ideal-excl "<Ideal exclusion>" \
+  --req-pheno "<Required phenotypic markers>" \
+  --ideal-pheno "<Ideal phenotypic markers>" \
+  --parent "<Full Name>" --subset "<Abbreviation>" --top 5
+```
+
+For several/all cell types at once, use batch mode instead:
+
+```bash
+uv run soulcap-match --batch --lexical --ready-only
+```
+
+This writes `reports/candidate_cl_mappings_batch.tsv` (marker-based, top-N
+per row, with `contradictions`/`disqualified` columns) and
+`reports/candidate_cl_mappings_agreement.tsv` (marker top-1 vs. lexical top-1
+side by side, with an `agreement` column).
+
+## Step 2 — never trust rank 1 blindly
+
+Both methods fail in different, uncorrelated ways — this was learned the hard
+way across NK, ILC, DC, and Basophil rows:
+
+- **Marker-based top-1 can be a real match that's too specific**, because CL
+  frequently has no marker axioms on the general parent class, only on its
+  subtypes (e.g. plain "natural killer cell" has zero marker axioms; only its
+  CD56-bright/CD56-dim children do). A broad, unqualified SOULCAP row (no
+  subset markers) usually wants the *general* CL term even if it scores worse
+  than a subtype.
+- **Lexical top-1 can pick a wrong-species or wrong-specificity term** free-text
+  ranking doesn't understand biology — it has picked a *mouse*-only term over
+  an available human one, and an overly-specific subtype over the general term
+  the query text actually named. Always check the label for `, mouse` and for
+  extra qualifiers the SOULCAP profile doesn't test.
+- **A `disqualified` or non-empty `contradictions` candidate is a hard no**
+  for that required marker — skip it even if it has the highest score.
+- **If marker and lexical disagree, that's a signal to look closer, not
+  noise** — cross-check both by hand rather than picking either automatically.
+- **A clean top-1 with no conflicts still isn't proof of correctness** — it
+  just means nothing actively contradicts it. Sanity-check the label makes
+  biological sense for the SOULCAP row's intent.
+
+## Step 3 — verify anything uncertain directly against CL
+
+When the batch output disagrees with itself, or a candidate label looks
+suspicious (unexpected species, unexpected specificity, or a real match seems
+to be missing from both lists), search CL directly instead of trusting either
+list:
+
+```bash
+uv run soulcap-lookup "<term you actually want>" --ontology cl --rows 10
+```
+
+Or fetch a specific candidate's own axioms to see why it scored the way it
+did:
+
+```bash
+uv run soulcap-lookup --id CL:XXXXXXX --ontology cl
+grep -n "## CL:XXXXXXX" -A 20 reports/cl_pro_relationships.md
+```
+
+This is how several real mismatches were caught: a lexical pick for one
+numbered subtype (e.g. "cDC1") turning out to be the *other* subtype's term
+because free-text search didn't discriminate "1" vs "2"; a match hiding
+because it needed an OR-group marker check
+(`(CD193+|FceR1a+|HLA-DR-|CD303-)`) rather than a single positive marker.
+
+## Step 4 — write the result
+
+Append an entry to `reports/candidate_cl_mappings.md` following the existing
+format (one `##` section per cell type or closely related family):
+
+```markdown
+## <Abbreviation> — <Full Name>
+
+**SOULCAP definition:** <marker columns, briefly>
+
+| Field | Value |
+|---|---|
+| Proposed CL term | <label> |
+| Proposed CL ID | `CL:XXXXXXX` |
+| Match type | Exact / Broad |
+
+**Rationale:** <why this term, referencing marker matches AND/OR lexical
+agreement, and calling out anything that had to be verified by hand>
+
+**Evidence:** <marker→gene table entries, literature quotes if available from
+reports/literature/, `soulcap-match` rank/score>
+```
+
+If a candidate is genuinely uncertain (e.g. the SOULCAP profile doesn't test
+a marker needed to distinguish two otherwise-equal CL candidates), say so
+explicitly — mark it **tentative** and name the alternatives, rather than
+picking one silently. See the `ILCp` entry in `candidate_cl_mappings.md` for
+the pattern.
+
+## Step 5 — flag anything wrong in either resource
+
+This project's aim isn't just mapping — it's finding gaps. While matching,
+watch for:
+
+- **A CL gap**: the "obviously right" CL term scores poorly only because CL
+  itself lacks an axiom a defining marker should have. Log it in
+  `reports/cl_term_issues.md` (see existing entries for the format), and ask
+  before filing a real GitHub issue (`gh issue create`, labelled
+  `cl-correction`, following the pattern of issues #12/#13/#14).
+- **A SOULCAP sheet issue**: a typo in `Full Name` that breaks lexical search,
+  a malformed marker expression, etc. This repo cannot edit the master Google
+  Sheet — document it clearly (which row, what's wrong, likely fix) instead
+  of patching `data/marker_combinations.csv`, which is a regenerable,
+  gitignored cache.
+
+## Known limitations to keep in mind
+
+- Marker-axiom scoring only ever ranks CL terms present in
+  `reports/cl_pro_relationships.tsv` (826 terms as of the last sync) — a
+  correct answer outside that set is structurally invisible to it; lexical
+  search is the only way to find those.
+- OR-groups (`|`-joined, e.g. `(CD193+|FceR1a+|HLA-DR-|CD303-)`) are scored as
+  "any one alternative satisfies," not "all required" — this was a real bug,
+  fixed in `extract_marker_clauses()`. A bracket with a trailing qualifier
+  negating a compound AND-group (`[HLA-DR+ CD11chi]-`) is **not** modelled
+  correctly yet — it falls back to flattening each leaf as independently
+  required. If you hit one of these while matching, note it rather than
+  trusting the score.
+- Batch lexical search promotes an exact (case-insensitive) label match to
+  rank 1 when present in a widened pool — but if the SOULCAP `Full Name` has
+  a typo, lexical search will search the wrong string and can return nothing
+  useful. Check the sheet's `Full Name` for typos before concluding "no CL
+  term exists."
diff --git a/.github/ISSUE_TEMPLATE/mapping_gap.yml b/.github/ISSUE_TEMPLATE/mapping_gap.yml
new file mode 100644
index 0000000..9747b51
--- /dev/null
+++ b/.github/ISSUE_TEMPLATE/mapping_gap.yml
@@ -0,0 +1,48 @@
+name: Mapping gap
+description: A SOULCAP cell type has no reasonable CL match, or CL's marker axioms conflict with SOULCAP's marker panel for a candidate match.
+title: "[gap] <SOULCAP abbreviation>: <short description>"
+labels: ["gap"]
+body:
+  - type: markdown
+    attributes:
+      value: |
+        Use this for gaps, not proposed mappings — a case where matching
+        broke down, not a candidate you're confident in. Confident candidates
+        go in `reports/candidate_cl_mappings.md`; gaps also get logged in
+        `reports/gaps.tsv` (add a row there too, if practical, so this issue
+        has a durable, filterable record alongside it).
+  - type: input
+    id: soulcap_abbreviation
+    attributes:
+      label: SOULCAP abbreviation
+      placeholder: e.g. NK, ILC1, Transitional
+    validations:
+      required: true
+  - type: dropdown
+    id: gap_type
+    attributes:
+      label: Gap type
+      options:
+        - no_reasonable_cl_match — no CL term fits, even loosely
+        - cl_marker_conflict — a candidate CL term's asserted markers contradict SOULCAP's panel
+        - cl_axiom_gap — CL is missing a marker axiom or term a defining SOULCAP marker implies
+        - sheet_data_issue — the SOULCAP sheet itself has missing/incorrect data blocking a match
+    validations:
+      required: true
+  - type: textarea
+    id: description
+    attributes:
+      label: Description
+      description: What was tried, what broke down, and why. Link the SOULCAP row and any candidate CL IDs considered and rejected.
+    validations:
+      required: true
+  - type: input
+    id: related_cl_ids
+    attributes:
+      label: Related CL ID(s), if any
+      placeholder: "CL:0000623"
+  - type: textarea
+    id: evidence
+    attributes:
+      label: Evidence
+      description: Links to reports/, marker data, or literature backing this up.
diff --git a/.github/workflows/robot-qc.yml b/.github/workflows/robot-qc.yml
new file mode 100644
index 0000000..443bdc3
--- /dev/null
+++ b/.github/workflows/robot-qc.yml
@@ -0,0 +1,50 @@
+name: ROBOT ontology QC
+
+on:
+  pull_request:
+
+jobs:
+  # Standalone, read-only audit of upstream CL — never merges anything from
+  # this repo into it, never asserts our candidate mappings as true. Catches
+  # pre-existing CL bugs (e.g. duplicate equivalence/subclass axioms,
+  # unsatisfiable classes) worth reporting upstream. Our own candidate
+  # mappings stay as SSSOM (reports/candidate_cl_mappings.sssom.tsv) — a
+  # proposal for human review, not something this repo should unilaterally
+  # convert into OWL axioms and reason over as if already accepted.
+  robot-upstream-cl:
+    name: ROBOT report + reason — upstream CL
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Java
+        uses: actions/setup-java@v4
+        with:
+          distribution: temurin
+          java-version: "21"
+
+      - name: Install ROBOT
+        run: |
+          curl -sL -o robot.jar https://github.com/ontodev/robot/releases/latest/download/robot.jar
+          curl -sL -o robot https://raw.githubusercontent.com/ontodev/robot/master/bin/robot
+          chmod +x robot
+          echo "$PWD" >> "$GITHUB_PATH"
+
+      - name: Download CL (base, import-free release artifact)
+        run: curl -sL -o cl-base.owl http://purl.obolibrary.org/obo/cl/cl-base.owl
+
+      - name: ROBOT report — structural issues (duplicate axioms etc.)
+        run: ./robot report --input cl-base.owl --fail-on ERROR --output cl-base-report.tsv
+
+      - name: ROBOT reason (ELK) — unsatisfiable classes / bad entailments
+        run: ./robot reason --input cl-base.owl --reasoner ELK --output cl-base-reasoned.owl
+
+      - name: Upload upstream QC artifacts
+        if: always()
+        uses: actions/upload-artifact@v4
+        with:
+          name: robot-upstream-cl-qc
+          path: |
+            cl-base-report.tsv
+            cl-base-reasoned.owl
+          if-no-files-found: ignore
diff --git a/CLAUDE.md b/CLAUDE.md
index 5ef1d93..4ceec29 100644
--- a/CLAUDE.md
+++ b/CLAUDE.md
@@ -45,8 +45,8 @@ See [README.md](README.md) for the full overview and setup.
 | [ROADMAP.md](ROADMAP.md) | Planned work / milestones and their deliverables and dependencies. |
 | [Notes.md](Notes.md) | Scratch notes on data sources + a marker-syntax quick reference. |
 | [MARKER_SYNTAX.md](MARKER_SYNTAX.md) | **Canonical spec** of the marker expression language (human-readable guide + EBNF). Cite this for anything parsing/validating marker strings. |
-| [reports/](reports/) | Analysis reports. `marker_string_issues.md` is the curated review; `marker_validation.md` is **auto-generated** by the EBNF validator on each sync. `cl_pro_relationships.md`/`.tsv` are **auto-generated** by `soulcap-cl-pro` from Ubergraph. New reports go here. `reports/citation_traversal/` holds gitignored, regenerable snippet caches + summaries from the `citation-traversal` skill. |
-| `src/soulcap_cl_mapping/` | All Python code. `sync_sheets.py` → `soulcap-sync`; `marker_syntax.py` → `soulcap-validate` (EBNF validator); `snippet_cache.py` → `soulcap-cache`; `report_validator.py` → `soulcap-validate-report`; `cl_pro.py` → `soulcap-cl-pro` (CL→PR relationships via Ubergraph SPARQL). |
+| [reports/](reports/) | Analysis reports. `marker_string_issues.md` is the curated review; `marker_validation.md` is **auto-generated** by the EBNF validator on each sync. `cl_pro_relationships.md`/`.tsv` are **auto-generated** by `soulcap-cl-pro` from Ubergraph. `cl_term_issues.md` tracks proposed CL corrections found during mapping work. `candidate_cl_mappings.md` is the Milestone 4 deliverable — proposed SOULCAP→CL mappings with rationale and evidence. `candidate_cl_mappings_batch.tsv`/`candidate_cl_mappings_agreement.tsv` are **auto-generated** by `soulcap-match --batch [--lexical]` (issue #6) — a marker-axiom-only pass and a marker/lexical agreement pass across every SOULCAP cell type; treat as an unreviewed draft shortlist (conflicts must be checked), not curated output. `candidate_cl_mappings.sssom.tsv` is **auto-generated** by `soulcap-sssom` from the curated `CURATED_MAPPINGS` table in `sssom_export.py` (kept in sync by hand with `candidate_cl_mappings.md`) — standard SSSOM format, with `confidence`/`comment` derived from whether the match is backed by a directly-asserted CL marker axiom, an inferred-only one, or none at all (lexical/name match only). `gaps.tsv` is a curated, hand-maintained log of cases where SOULCAP has no reasonable CL match, CL conflicts with a marker panel, CL has an axiom gap, or the sheet itself has a data problem — separate from the mapping table; matching GitHub issues use the `gap` label (`.github/ISSUE_TEMPLATE/mapping_gap.yml`). New reports go here. `reports/citation_traversal/` holds gitignored, regenerable snippet caches + summaries from the `citation-traversal` skill. |
+| `src/soulcap_cl_mapping/` | All Python code. `sync_sheets.py` → `soulcap-sync`; `marker_syntax.py` → `soulcap-validate` (EBNF validator); `snippet_cache.py` → `soulcap-cache`; `report_validator.py` → `soulcap-validate-report`; `cl_pro.py` → `soulcap-cl-pro` (CL→PR relationships via Ubergraph SPARQL); `cl_match.py` → `soulcap-match` (marker-axiom + lexical CL candidate scoring, single-profile or `--batch`); `oak_match.py` → `soulcap-oak-match` (OAK sqlite-backed lexical/synonym CL search — downloads/caches a local CL database on first use, ~100MB); `sssom_export.py` → `soulcap-sssom` (curated mappings → SSSOM TSV, with confidence derived from CL marker-axiom assertion status). |
 | `tests/` | Unit tests (mirror `src/` layout). |
 | `.claude/skills/` | Project skills — see [citation-traversal](.claude/skills/citation-traversal/SKILL.md) and `ontology-term-lookup`. |
 | `.claude/hooks/` | Claude Code hooks. `validate_report_quotes.py` is a PreToolUse guard that blocks writing a citation-traversal report whose quotes aren't verbatim in the snippet cache. |
@@ -64,7 +64,13 @@ documents at the repo root.
 - **All code lives under `src/`** (package `soulcap_cl_mapping`).
 - **All code must have ≥80% unit-test coverage**, with tests under `tests/`
   using a standard harness (`pytest`).
-- **GitHub Actions must run the tests on all PRs.**
+- **GitHub Actions must run the tests on all PRs.** `.github/workflows/tests.yml`
+  runs lint/format/mypy/pytest. `.github/workflows/robot-qc.yml` runs a
+  read-only ROBOT audit of upstream CL (`cl-base.owl`, the import-free release
+  artifact) with `robot report` + `robot reason` (ELK), independent of our
+  mappings. It never merges our own candidate mappings into CL or reasons
+  over them as if accepted — those stay as SSSOM (`soulcap-sssom`), a
+  proposal for human review, not something this repo asserts unilaterally.
 - Use **UV** for environment and dependency management (`uv sync`,
   `uv run ...`). Don't invoke `pip` directly.
 - The marker expression language is precisely defined in
@@ -106,6 +112,12 @@ exact ontology labels via OLS4 — prefer it for term resolution.
   any quote isn't verbatim in the cache. See
   [SKILL.md](.claude/skills/citation-traversal/SKILL.md).
 - **`ontology-term-lookup`** — resolve biological terms to ontology labels via OLS4.
+- **`soulcap-cl-matching`** — propose a CL match for a SOULCAP cell type using
+  both marker-axiom scoring (`soulcap-match`) and lexical search, cross-checked
+  against each other and verified via direct OLS4 lookup when uncertain, then
+  written into `reports/candidate_cl_mappings.md` with rationale and evidence.
+  The Milestone 4 workflow. See
+  [SKILL.md](.claude/skills/soulcap-cl-matching/SKILL.md).
 
 > Local RAG indexing (a `local-paper-index` skill) was trialled here but removed
 > to avoid confusion — it was copied verbatim from `atlas_chat` and unused.
diff --git a/LICENSE b/LICENSE
new file mode 100644
index 0000000..ceabd93
--- /dev/null
+++ b/LICENSE
@@ -0,0 +1,185 @@
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+   8. Limitation of Liability. In no event and under no legal theory,
+      whether in tort (including negligence), contract, or otherwise,
+      unless required by applicable law (such as deliberate and grossly
+      negligent acts) or agreed to in writing, shall any Contributor be
+      liable to You for damages, including any direct, indirect, special,
+      incidental, or exemplary damages of any character arising as a
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+      Work (including but not limited to damages for loss of goodwill,
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+
+   9. Accepting Warranty or Additional Liability. While redistributing
+      the Work or Derivative Works thereof, You may offer, and charge a
+      fee for, acceptance of support, warranty, indemnity, or other
+      liability obligations and/or rights consistent with this License.
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+      liability incurred by, or claims asserted against, such Contributor
+      by reason of your accepting any such warranty or additional liability.
+
+   END OF TERMS AND CONDITIONS
+
+   Copyright 2026 SOULCAP Foundation
+
+   Licensed under the Apache License, Version 2.0 (the "License");
+   you may not use this file except in compliance with the License.
+   You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
+   implied. See the License for the specific language governing
+   permissions and limitations under the License.
diff --git a/README.md b/README.md
index 22afbc5..7eb53a9 100644
--- a/README.md
+++ b/README.md
@@ -136,6 +136,81 @@ uv run soulcap-cl-pro --reports-dir other/   # write elsewhere
 uv run soulcap-cl-pro --endpoint <url>        # use a different SPARQL endpoint
 ```
 
+## Candidate CL matching (`soulcap-match`)
+
+Ranks CL terms against a SOULCAP marker profile, scored from
+`cl_pro_relationships.tsv`. Single-profile mode (paste the four marker columns
+for one cell type):
+
+```bash
+uv run soulcap-match --req-excl "CD14- CD3- CD19-" --req-pheno "CD45+ CD56+/hi" --parent "NK cell"
+```
+
+Batch mode scores every row of `data/marker_combinations.csv` in one pass:
+
+```bash
+uv run soulcap-match --batch                # -> reports/candidate_cl_mappings_batch.tsv
+uv run soulcap-match --batch --lexical       # + name-based OLS4 CL search and an
+                                              #   agreement report (reports/candidate_cl_mappings_agreement.tsv)
+```
+
+Marker-axiom scoring can only rank CL terms that already have a PR axiom in
+`cl_pro_relationships.tsv` — many CL terms (including some "obvious" parent
+classes) have none and are invisible to it. `--lexical` adds an independent
+name-based candidate per row; rows where both approaches agree are a much
+stronger signal than either alone. **Treat batch output as an unreviewed draft
+shortlist** — check the `contradictions`/`marker_conflict` columns before
+trusting a rank-1 pick, since shared exclusion markers can inflate scores for
+biologically wrong candidates.
+
+## OAK lexical/synonym matching (`soulcap-oak-match`)
+
+A second, independent lexical matcher using [OAK](https://incatools.github.io/ontology-access-kit/)
+(Ontology Access Kit) instead of the OLS4 REST API:
+
+```bash
+uv run soulcap-oak-match "Natural Killer Cell"
+uv run soulcap-oak-match "NK cell" --top 5
+```
+
+Uses OAK's `sqlite:obo:cl` adapter — a search-optimised local database that
+ranks exact label/synonym matches first by construction (OLS4's free-text
+relevance ranking, by contrast, can bury an exact match behind dozens of
+more-specific subtype variants). Downloads and caches a local CL database
+(~100MB) on first use; instant afterwards.
+
+## SSSOM mapping export (`soulcap-sssom`)
+
+Exports the curated Milestone 4 mapping decisions (`CURATED_MAPPINGS` in
+`sssom_export.py`, kept in sync by hand with `candidate_cl_mappings.md`) as a
+standard [SSSOM](https://mapping-commons.github.io/sssom/) TSV, instead of
+writing OWL axioms directly:
+
+```bash
+uv run soulcap-sssom # -> reports/candidate_cl_mappings.sssom.tsv
+```
+
+`confidence` and `comment` are derived automatically — not hand-typed — from
+whether CL directly asserts the matched marker axiom(s), only has them by
+inference, or has no marker axiom for the term at all. This is what lets the
+output distinguish "CL confirms this" from "this is only supported by
+inferred markers," per row.
+
+SSSOM is the final output here, deliberately: these are proposed mappings for
+human review, not assertions this repo makes unilaterally. This module does
+not convert them into OWL logical axioms or merge them into CL.
+
+## ROBOT ontology QC
+
+`.github/workflows/robot-qc.yml` runs on every PR and audits upstream CL —
+downloads CL's `cl-base.owl` (import-free release artifact) and runs
+`robot report` + `robot reason` (ELK) on it standalone, independent of
+anything in this repo. Catches pre-existing CL bugs (e.g. duplicate
+equivalence/subclass axioms) worth reporting upstream. It never touches our
+own candidate mappings — those stay as SSSOM, a proposal for human review,
+not something this repo should unilaterally convert into OWL axioms and merge
+into CL as if already accepted.
+
 ## Skills & literature workflows
 
 This repo ships Claude Code skills under `.claude/skills/`:
diff --git a/ROADMAP.md b/ROADMAP.md
index 27c3bce..e0101d6 100644
--- a/ROADMAP.md
+++ b/ROADMAP.md
@@ -132,6 +132,7 @@ upstream to `obophenotype/cell-ontology`.
 | Issue | Terms | Status |
 |-------|-------|--------|
 | [#13 NKT cell naming](https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13) | CL:4052055 → "CD56-positive T cell, human"; CL:0000814 → "iNKT cell" | Filed upstream: [CL#3663](https://github.com/obophenotype/cell-ontology/issues/3663), [CL#3664](https://github.com/obophenotype/cell-ontology/issues/3664) |
+| [#14 Missing human-specific ILC1 term](https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14) | CL:0001067 "group 1 innate lymphoid cell" — no `, human` variant, unlike group 2 (CL:0001081) and group 3 (CL:0001078) | Open — not yet filed upstream |
 
 ---
 
diff --git a/marker_mappings/marker_protein_gene.csv b/marker_mappings/marker_protein_gene.csv
index 548408f..ab63e87 100644
--- a/marker_mappings/marker_protein_gene.csv
+++ b/marker_mappings/marker_protein_gene.csv
@@ -44,33 +44,33 @@ CXCR3,CXCR3|CD183,Required phenotypic markers,PR:000001207,C-X-C chemokine recep
 CXCR5,CXCR5|CD185,Required phenotypic markers,PR:000001209,C-X-C chemokine receptor type 5,P32302,C-X-C chemokine receptor type 5,CXCR5,HGNC:1060,,inferred,high,reports/cl_pro_relationships.tsv,
 FceR1a,,Ideal phenotypic markers|Required phenotypic markers,PR:000007431,high affinity immunoglobulin epsilon receptor subunit alpha,,high affinity immunoglobulin epsilon receptor subunit alpha,,,,ols4,high,https://www.ebi.ac.uk/ols4/api/search?q=FCER1A&ontology=pr; https://nodenormalization-sri.renci.org/1.3/get_normalized_nodes?curie=PR:000007431,high-affinity IgE receptor alpha chain
 HLA-DR,,Ideal exclusion|Ideal phenotypic markers|Required phenotypic markers,PR:000002015,MHC class II histocompatibility antigen alpha chain DRA,,MHC class II histocompatibility antigen alpha chain DRA,,,,ols4,high,https://www.ebi.ac.uk/ols4/api/search?q=HLA-DRA&ontology=pr; https://nodenormalization-sri.renci.org/1.3/get_normalized_nodes?curie=PR:000002015,HLA-DR is a heterodimer of HLA-DRA + HLA-DRB1; mapped to HLA-DRA as primary chain
-IFNg,,Ideal phenotypic markers,,,P01579,interferon gamma,IFNG,HGNC:5438,,monarch,high,https://rest.genenames.org/fetch/symbol/IFNG,intracellular marker
-IL-13,,Ideal phenotypic markers,,,P35225,interleukin 13,IL13,HGNC:5973,,monarch,high,https://rest.genenames.org/fetch/symbol/IL13,intracellular marker
-IL-17a,,Ideal phenotypic markers,,,Q16552,interleukin 17A,IL17A,HGNC:5981,,monarch,high,https://rest.genenames.org/fetch/symbol/IL17A,intracellular marker
-IL-4,,Ideal phenotypic markers,,,P05112,interleukin 4,IL4,HGNC:6014,,monarch,high,https://rest.genenames.org/fetch/symbol/IL4,intracellular marker
-IL-5,,Ideal phenotypic markers,,,P05113,interleukin 5,IL5,HGNC:6016,,monarch,high,https://rest.genenames.org/fetch/symbol/IL5,intracellular marker
-IL-9,,Ideal phenotypic markers,,,P15248,interleukin 9,IL9,HGNC:6029,,monarch,high,https://rest.genenames.org/fetch/symbol/IL9,intracellular marker
+IFNg,,Ideal phenotypic markers,PR:P01579,interferon gamma (human),P01579,interferon gamma,IFNG,HGNC:5438,,monarch,high,https://rest.genenames.org/fetch/symbol/IFNG; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_P01579,intracellular marker
+IL-13,,Ideal phenotypic markers,PR:P35225,interleukin-13 (human),P35225,interleukin 13,IL13,HGNC:5973,,monarch,high,https://rest.genenames.org/fetch/symbol/IL13; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_P35225,intracellular marker
+IL-17a,,Ideal phenotypic markers,PR:Q16552,interleukin-17A (human),Q16552,interleukin 17A,IL17A,HGNC:5981,,monarch,high,https://rest.genenames.org/fetch/symbol/IL17A; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_Q16552,intracellular marker
+IL-4,,Ideal phenotypic markers,PR:P05112,interleukin-4 (human),P05112,interleukin 4,IL4,HGNC:6014,,monarch,high,https://rest.genenames.org/fetch/symbol/IL4; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_P05112,intracellular marker
+IL-5,,Ideal phenotypic markers,PR:P05113,interleukin-5 (human),P05113,interleukin 5,IL5,HGNC:6016,,monarch,high,https://rest.genenames.org/fetch/symbol/IL5; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_P05113,intracellular marker
+IL-9,,Ideal phenotypic markers,PR:P15248,interleukin-9 (human),P15248,interleukin 9,IL9,HGNC:6029,,monarch,high,https://rest.genenames.org/fetch/symbol/IL9; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_P15248,intracellular marker
 IgA,,Required phenotypic markers,,,,,,,,manual,low,,Immunoglobulin heavy-chain class A; encoded by IGHA1 and IGHA2 gene family. No single PR ID or UniProt accession covers all isotypes.
 IgD,,Required phenotypic markers,,,,,,,,manual,low,,Immunoglobulin heavy-chain class D; encoded by IGHD. No single PR ID or UniProt accession.
 IgE,,Required phenotypic markers,,,,,,,,manual,low,,Immunoglobulin heavy-chain class E; encoded by IGHE. No single PR ID or UniProt accession.
 IgG,,Required phenotypic markers,,,,,,,,manual,low,,Immunoglobulin heavy-chain class G; encoded by IGHG1/IGHG2/IGHG3/IGHG4 gene family. No single PR ID or UniProt accession covers all subclasses.
 IgM,,Required phenotypic markers,,,,,,,,manual,low,,Immunoglobulin heavy-chain class M; encoded by IGHM. No single PR ID or UniProt accession.
-MR1,,Required phenotypic markers,,,Q95460,"major histocompatibility complex, class I-related",MR1,HGNC:4975,,manual,high,https://rest.genenames.org/fetch/symbol/MR1,MHC-related protein 1; also used as 'MR1 tetramer' reagent for MAIT cell detection
+MR1,,Required phenotypic markers,PR:Q95460,major histocompatibility complex class I-related protein 1 (human),Q95460,"major histocompatibility complex, class I-related",MR1,HGNC:4975,,manual,high,https://rest.genenames.org/fetch/symbol/MR1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_Q95460,MHC-related protein 1; also used as 'MR1 tetramer' reagent for MAIT cell detection
 TCR,,Ideal phenotypic markers|Required phenotypic markers,,,,,,,,manual,medium,,pan-TCR marker; not specific to a single gene
-TCRVa24,,Required phenotypic markers,,,,,TRAV10,HGNC:12103,,manual,medium,https://rest.genenames.org/fetch/symbol/TRAV10,IMGT nomenclature: TRAV10
-TCRVa24-Ja18,,Required phenotypic markers,,,,,TRAV10,HGNC:12103,,manual,medium,https://rest.genenames.org/fetch/symbol/TRAV10,Invariant iNKT TCR chain; two-gene marker TRAV10+TRAJ18; gene_symbol populated with TRAV10 as primary TRAV gene
-TCRVa7.2,,Required phenotypic markers,,,,,TRAV1-2,HGNC:12102,,manual,medium,https://rest.genenames.org/fetch/symbol/TRAV1-2,IMGT nomenclature: TRAV1-2
-TCRVb11,,Required phenotypic markers,,,,,TRBV25-1,HGNC:12205,,manual,medium,https://rest.genenames.org/fetch/symbol/TRBV25-1,IMGT nomenclature: TRBV25-1
-TCRVd2,,Required phenotypic markers,,,,,TRDV2,HGNC:12263,,manual,medium,https://rest.genenames.org/fetch/symbol/TRDV2,IMGT nomenclature: TRDV2
-TCRVg9,,Required phenotypic markers,,,,,TRGV9,HGNC:12295,,manual,medium,https://rest.genenames.org/fetch/symbol/TRGV9,IMGT nomenclature: TRGV9
+TCRVa24,,Required phenotypic markers,PR:A0A0B4J240,T cell receptor alpha variable 10 (human),A0A0B4J240,T cell receptor alpha variable 10 (human),TRAV10,HGNC:12103,,manual,medium,https://rest.genenames.org/fetch/symbol/TRAV10; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J240,IMGT nomenclature: TRAV10
+TCRVa24-Ja18,,Required phenotypic markers,PR:A0A0B4J240,T cell receptor alpha variable 10 (human),A0A0B4J240,T cell receptor alpha variable 10 (human),TRAV10,HGNC:12103,,manual,medium,https://rest.genenames.org/fetch/symbol/TRAV10; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J240,Invariant iNKT TCR chain; two-gene marker TRAV10+TRAJ18; gene_symbol populated with TRAV10 as primary TRAV gene
+TCRVa7.2,,Required phenotypic markers,PR:A0A0B4J238,T cell receptor alpha variable 1-2 (human),A0A0B4J238,T cell receptor alpha variable 1-2 (human),TRAV1-2,HGNC:12102,,manual,medium,https://rest.genenames.org/fetch/symbol/TRAV1-2; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J238,IMGT nomenclature: TRAV1-2
+TCRVb11,,Required phenotypic markers,PR:A0A075B6N4,T cell receptor beta variable 25-1 (human),A0A075B6N4,T cell receptor beta variable 25-1 (human),TRBV25-1,HGNC:12205,,manual,medium,https://rest.genenames.org/fetch/symbol/TRBV25-1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A075B6N4,IMGT nomenclature: TRBV25-1
+TCRVd2,,Required phenotypic markers,PR:A0JD36,T cell receptor delta variable 2 (human),A0JD36,T cell receptor delta variable 2 (human),TRDV2,HGNC:12263,,manual,medium,https://rest.genenames.org/fetch/symbol/TRDV2; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0JD36,IMGT nomenclature: TRDV2
+TCRVg9,,Required phenotypic markers,PR:Q99603,T cell receptor gamma variable 9 (human),Q99603,T cell receptor gamma variable 9 (human),TRGV9,HGNC:12295,,manual,medium,https://rest.genenames.org/fetch/symbol/TRGV9; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_Q99603,IMGT nomenclature: TRGV9
 TCRab,,Required phenotypic markers,,,,,,,,manual,medium,,pan-αβ TCR marker; recognises assembled αβ heterodimer
 TCRgd,,Required phenotypic markers,,,,,,,,manual,medium,,pan-γδ TCR marker; recognises assembled γδ heterodimer
-TCRva24,,Required phenotypic markers,,,,,TRAV10,HGNC:12103,,manual,medium,https://rest.genenames.org/fetch/symbol/TRAV10,Likely duplicate of TCRVa24 (different capitalisation) — data quality issue; mapped identically to TCRVa24 / TRAV10
+TCRva24,,Required phenotypic markers,PR:A0A0B4J240,T cell receptor alpha variable 10 (human),A0A0B4J240,T cell receptor alpha variable 10 (human),TRAV10,HGNC:12103,,manual,medium,https://rest.genenames.org/fetch/symbol/TRAV10; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A0B4J240,Likely duplicate of TCRVa24 (different capitalisation) — data quality issue; mapped identically to TCRVa24 / TRAV10
 Tetramer,,Required phenotypic markers,,,,,,,,manual,low,,generic reagent term; not a specific protein
 V,,Ideal phenotypic markers|Required phenotypic markers,,,,,,,,manual,low,,likely parsing artifact from multi-word TCR gene name — data quality issue; see reports/marker_validation.md
-VB11,,Required phenotypic markers,,,,,TRBV25-1,HGNC:12205,,manual,medium,https://rest.genenames.org/fetch/symbol/TRBV25-1,Duplicate of TCRVb11 (uppercase) — data quality issue; same mapping as TCRVb11 / TRBV25-1
-Vb11,,Required phenotypic markers,,,,,TRBV25-1,HGNC:12205,,manual,medium,https://rest.genenames.org/fetch/symbol/TRBV25-1,Duplicate of TCRVb11 — data quality issue; same mapping as TCRVb11 / TRBV25-1
-Vd1,,Required phenotypic markers,,,,,TRDV1,HGNC:12262,,manual,medium,https://rest.genenames.org/fetch/symbol/TRDV1,IMGT nomenclature: TRDV1
+VB11,,Required phenotypic markers,PR:A0A075B6N4,T cell receptor beta variable 25-1 (human),A0A075B6N4,T cell receptor beta variable 25-1 (human),TRBV25-1,HGNC:12205,,manual,medium,https://rest.genenames.org/fetch/symbol/TRBV25-1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A075B6N4,Duplicate of TCRVb11 (uppercase) — data quality issue; same mapping as TCRVb11 / TRBV25-1
+Vb11,,Required phenotypic markers,PR:A0A075B6N4,T cell receptor beta variable 25-1 (human),A0A075B6N4,T cell receptor beta variable 25-1 (human),TRBV25-1,HGNC:12205,,manual,medium,https://rest.genenames.org/fetch/symbol/TRBV25-1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A075B6N4,Duplicate of TCRVb11 — data quality issue; same mapping as TCRVb11 / TRBV25-1
+Vd1,,Required phenotypic markers,PR:A0A1B0GX56,T cell receptor delta variable 1 (human),A0A1B0GX56,T cell receptor delta variable 1 (human),TRDV1,HGNC:12262,,manual,medium,https://rest.genenames.org/fetch/symbol/TRDV1; https://www.ebi.ac.uk/ols4/api/ontologies/pr/terms?iri=obo:PR_A0A1B0GX56,IMGT nomenclature: TRDV1
 delta,,Ideal phenotypic markers|Required phenotypic markers,,,,,,,,manual,low,,likely parsing artifact from multi-word TCR gene name — data quality issue; see reports/marker_validation.md
 delta1,,Ideal phenotypic markers,,,,,,,,manual,low,,likely parsing artifact from multi-word TCR gene name — data quality issue; see reports/marker_validation.md
 gamma,,Ideal phenotypic markers|Required phenotypic markers,,,,,,,,manual,low,,likely parsing artifact from multi-word TCR gene name — data quality issue; see reports/marker_validation.md
diff --git a/marker_mappings/pr_uniprot_overrides.csv b/marker_mappings/pr_uniprot_overrides.csv
new file mode 100644
index 0000000..20daa93
--- /dev/null
+++ b/marker_mappings/pr_uniprot_overrides.csv
@@ -0,0 +1,3 @@
+pr,uniprot_human
+PR:000001479,UniProtKB:P12318
+PR:000001483,UniProtKB:P08637
\ No newline at end of file
diff --git a/pyproject.toml b/pyproject.toml
index 14e18cc..f3b6fa3 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -11,6 +11,14 @@ dependencies = [
     "openpyxl>=3.1",
     "SPARQLWrapper>=2.0",
     "certifi>=2024.0",
+    "oaklib>=0.6.23",
+    "sssom>=0.4.17",
+    # eutils==0.6.0 (the version uv resolves on Python <3.12, a transitive
+    # dependency of oaklib) still does `import pkg_resources` at module
+    # load; setuptools >=81 removed pkg_resources entirely, breaking any
+    # import of oaklib (and therefore soulcap-oak-match) on Python 3.11.
+    # Pin until eutils/oaklib drop the pkg_resources dependency upstream.
+    "setuptools<81",
 ]
 
 [project.scripts]
@@ -24,6 +32,8 @@ soulcap-match = "soulcap_cl_mapping.cl_match:main"
 soulcap-tokens = "soulcap_cl_mapping.marker_syntax:tokens_main"
 soulcap-hgnc = "soulcap_cl_mapping.hgnc_map:main"
 soulcap-map = "soulcap_cl_mapping.marker_map:main"
+soulcap-oak-match = "soulcap_cl_mapping.oak_match:main"
+soulcap-sssom = "soulcap_cl_mapping.sssom_export:main"
 
 [project.optional-dependencies]
 dev = [
@@ -54,3 +64,7 @@ python_version = "3.12"
 disallow_untyped_defs = true
 warn_return_any = true
 warn_unused_ignores = true
+
+[[tool.mypy.overrides]]
+module = ["oaklib.*", "sssom.*", "sssom_schema.*", "curies.*"]
+ignore_missing_imports = true
diff --git a/reports/candidate_cl_mappings.md b/reports/candidate_cl_mappings.md
new file mode 100644
index 0000000..b9ef7c4
--- /dev/null
+++ b/reports/candidate_cl_mappings.md
@@ -0,0 +1,608 @@
+# Candidate CL Mappings
+
+Milestone 4 deliverable: proposed SOULCAP → Cell Ontology (CL) mappings, each
+with a rationale and supporting evidence from the Milestone 1 marker→gene
+table and Milestone 2 literature reports. See [ROADMAP.md](../ROADMAP.md) for
+the milestone definition.
+
+Note: Milestone 3 (audit of the *existing* curated mappings) is blocked on the
+Google Sheet gaining broad/exact-match and comment columns, so entries below
+are proposed directly from marker + literature evidence rather than from a
+formal audit pass.
+
+Candidates were shortlisted with `uv run soulcap-match` (scores CL terms in
+[reports/cl_pro_relationships.tsv](cl_pro_relationships.tsv) against a
+SOULCAP marker profile) and reviewed by hand — the tool ranks candidates but
+does not pick the mapping automatically. Any CL gap surfaced along the way is
+also logged in [cl_term_issues.md](cl_term_issues.md).
+
+---
+
+## NK — Natural Killer Cell
+
+**SOULCAP definition** ([data/marker_combinations.csv](../data/marker_combinations.csv)):
+`(CD14-|CD33-|CD64-) CD34- CD3- CD19-` exclusion; `live/ CD45+ CD56+/hi CD127-`
+required phenotypic markers. Currently unmapped (`OLS CL identifier` empty).
+
+| Field | Value |
+|---|---|
+| Proposed CL term | natural killer cell |
+| Proposed CL ID | `CL:0000623` |
+| Match type | Exact |
+| `soulcap-match` rank | 33 / 826 (score 13) — low despite being the correct match; see rationale |
+
+**Rationale:** SOULCAP's plain "NK" row has no subtype-discriminating markers
+(no CD16, no CD57), so it corresponds to the general parent concept rather
+than a bright/dim/decidual subtype. `CL:0000623` matches on all four
+negative-exclusion markers (CD14-, CD3-, CD19-; CD20 is not part of the
+SOULCAP profile). Its low `soulcap-match` score is *not* evidence against the
+mapping — it reflects a real CL gap (see below), not a poor match.
+
+**Evidence:**
+- Marker → gene: CD56 → `PR:000001024` → UniProt `P13591` → gene `NCAM1`
+  (`HGNC:7656`) — [marker_mappings/marker_protein_gene.csv](../marker_mappings/marker_protein_gene.csv)
+- Literature: "Natural killer cells are prototypic members of the innate
+  lymphoid cell (ILC) family and characterized in humans by expression of the
+  phenotypic marker CD56 in the absence of CD3." — Van Acker HH et al. 2017
+  (PMID:28791027) — [reports/literature/nk_cell_markers.md](literature/nk_cell_markers.md)
+
+**CL gap flagged:** `CL:0000623` asserts no positive marker axiom at all
+(only CD14-/CD19-/CD3-/CD20- negatives), even though CD56 positivity is the
+field-standard defining marker and CL already asserts it on this term's own
+children (`CL:0000938`, `CL:0000939`). Logged in
+[cl_term_issues.md](cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623) —
+not yet filed as a repo issue.
+
+---
+
+## NK2 — Natural Killer Cell 2 (CD56-bright)
+
+**SOULCAP definition:** as NK, plus required `CD56hi CD16-/lo CD57-`.
+
+| Field | Value |
+|---|---|
+| Proposed CL term | CD16-negative, CD56-bright natural killer cell, human |
+| Proposed CL ID | `CL:0000938` |
+| Match type | Exact |
+| `soulcap-match` rank | 1 / 826 |
+
+**Rationale:** CL directly asserts CD56 (high) and matches on the shared
+negative-exclusion markers; the CD16-negative axiom aligns with SOULCAP's
+`CD16-/lo` requirement. Clean top-ranked match, no conflicts.
+
+**Evidence:** Marker→gene as above (CD56 → NCAM1); CD16 → FCGR3A (see
+[marker_mappings/marker_protein_gene.csv](../marker_mappings/marker_protein_gene.csv)).
+Literature distinguishing CD56bright/CD56dim NK subsets:
+[reports/literature/nk_cell_markers.md](literature/nk_cell_markers.md).
+
+---
+
+## CTNK / NK1 / NK3 — Cytotoxic Natural Killer Cell (CD16-positive)
+
+**SOULCAP definition:** as NK, plus required `CD16+` (NK1/NK3 additionally
+split on `CD57-`/`CD57+`).
+
+| Field | Value |
+|---|---|
+| Proposed CL term | CD16-positive, CD56-dim natural killer cell, human |
+| Proposed CL ID | `CL:0000939` |
+| Match type | Exact (CTNK, broad parent of NK1/NK3) |
+| `soulcap-match` rank | 1 / 826 |
+
+**Rationale:** CL asserts CD16 positive and CD56 low/dim; the SOULCAP CD16+
+requirement matches directly, and CD56+/hi is compatible with CL's "dim"
+(present, lower level) rather than contradicting it. Confirmed only after
+fixing a `soulcap-match` scoring bug that had conflated CL's "low/dim" sense
+with "negative" — see commit history on
+[src/soulcap_cl_mapping/cl_match.py](../src/soulcap_cl_mapping/cl_match.py).
+
+**Note:** CL:0000939 does not itself distinguish CD57- (NK1) from CD57+
+(NK3) — neither SOULCAP's NK1 nor NK3 has a more specific CL match available
+yet based on current `cl_pro_relationships` data. Flagged for follow-up, not
+yet logged as a formal CL gap.
+
+**Evidence:** Marker→gene as above; literature on CD16+CD56dim cytotoxic NK
+subset: [reports/literature/nk_cell_markers.md](literature/nk_cell_markers.md).
+
+---
+
+## ILCp — Innate Lymphoid Cell Progenitor
+
+**SOULCAP definition:** required `live/ CD45+ CD3- CD127+ CD56+ CD117+
+CD294-`. No exclusion columns populated; CD34 status is not tested.
+
+| Field | Value |
+|---|---|
+| Proposed CL term | CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human |
+| Proposed CL ID | `CL:0001074` |
+| Match type | Broad — **tentative, unconfirmed** |
+
+**Rationale:** Chosen on name match ("precursor" = SOULCAP's "Progenitor")
+plus agreement on CD56+/CD117+. **Uncertainty:** SOULCAP's ILCp profile does
+not test CD34 at all, so it cannot confirm or rule out `CL:0001074`'s
+CD34-**positive** requirement — two other CL candidates are equally
+marker-consistent and were not ruled out:
+- `CL:0001073` CD34-**negative**, CD56+, CD117+ innate lymphoid cell, human — differs from CL:0001074 only in CD34 sign.
+- `CL:0001082` immature innate lymphoid cell — generic "immature" label, no CD34 assertion either way.
+
+This should be treated as a **draft pick, not a confirmed mapping**, until
+either the sheet gains a CD34 column value for this row or literature
+resolves which CD34 state defines the SOULCAP-intended progenitor stage.
+
+---
+
+## ILC family — Innate Lymphoid Cells
+
+**SOULCAP definitions:** ILC (parent, `CD3- CD127+`), ILC1
+(`CD56- CD117- CD294-`), ILC2 (`CD56- CD117lo/- CD294+`), ILC3
+(`CD56+/- CD117+ CD294-`), all sharing the same lineage-exclusion columns.
+
+| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source |
+|---|---|---|---|---|
+| ILC | innate lymphoid cell | `CL:0001065` | Exact | Lexical — marker-based scoring returned an unrelated dendritic cell term |
+| ILC1 | group 1 innate lymphoid cell | `CL:0001067` | Exact | Lexical, OLS4-verified |
+| ILC2 | group 2 innate lymphoid cell, **human** | `CL:0001081` | Exact | OLS4-verified directly — batch lexical search had picked the **mouse** term (`CL:0002089`) |
+| ILC3 | group 3 innate lymphoid cell, **human** | `CL:0001078` | Exact | OLS4-verified directly — batch lexical search had over-specified to an NKp44-positive subtype (`CL:0001079`) SOULCAP's profile doesn't test |
+
+**Rationale:** For all four rows, marker-axiom scoring failed outright
+(top candidates were unrelated dendritic-cell terms — `cl_pro_relationships.tsv`
+has effectively no useful axioms for this lineage). The plain-name matches are
+textbook-standard ILC group nomenclature and were confirmed by direct OLS4
+lookup rather than trusted from the raw batch lexical output, since that
+output was independently wrong for both ILC2 (species) and ILC3
+(over-specific subtype) in ways a naive "top lexical hit" read would have
+missed.
+
+**CL gap flagged — ILC1:** Unlike ILC2 and ILC3, **no human-specific "group 1
+innate lymphoid cell" term exists in CL** — only the species-generic
+`CL:0001067`. This is an asymmetry in CL's own authoring (two of three ILC
+groups have a human-specific term, one doesn't). Logged in
+[cl_term_issues.md](cl_term_issues.md) and being filed as a repo issue (see
+Open follow-ups).
+
+---
+
+## DC family — Dendritic Cells
+
+**SOULCAP definitions:** cDC (parent, `CD11chi HLA-DR+`), cDC1
+(`CD1c- CD141+`), cDC2 (`CD1c+ CD141lo/-`), pDC (`CD123hi CD303+`, low CD33).
+
+| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source |
+|---|---|---|---|---|
+| cDC | conventional dendritic cell | `CL:0000990` | Exact | Lexical |
+| cDC1 | CD141-positive myeloid dendritic cell | `CL:0002394` | Exact | OLS4-verified directly — batch lexical search had wrongly assigned cDC1 the *same* term as cDC2 |
+| cDC2 | CD1c-positive myeloid dendritic cell | `CL:0002399` | Exact | Lexical, confirmed correct by cross-check against cDC1 |
+| pDC | plasmacytoid dendritic cell, human | `CL:0001058` | Exact | OLS4-verified directly — see sheet naming issue below |
+
+**Rationale (cDC1/cDC2):** SOULCAP defines cDC1 as CD1c-**negative**,
+CD141-**positive** (classic BDCA3⁺ cDC1) and cDC2 as CD1c-**positive**,
+CD141-low/negative (classic BDCA1⁺ cDC2). The raw batch lexical search
+returned `CL:0002399` (CD1c-positive) as the top hit for **both** cDC1 and
+cDC2 queries — a false agreement caused by the free-text search not
+discriminating "1" vs "2" in the query well. Direct OLS4 search for
+"CD141-positive myeloid dendritic cell" resolved cDC1 correctly to
+`CL:0002394`.
+
+**Sheet naming issue — pDC:** the sheet's Full Name for `pDC` is "**Peripheral**
+Dendritic Cell," but its required markers (`CD123hi`, `CD303+`, low CD33) are
+the textbook definition of *plasmacytoid* dendritic cells, not a generic
+"peripheral" category. This typo/wrong word is what broke the batch lexical
+search for this row (it searched "Peripheral Dendritic Cell" and found an
+unrelated "migratory dendritic cell" hit). Likely should read "Plasmacytoid
+Dendritic Cell" — **flagging for sheet correction, not changed here** (the
+sheet is the source of truth and this repo cannot edit it directly; see
+[README.md](../README.md#input-data)).
+
+**Sheet naming issue — CTNK:** the sheet's Full Name for `CTNK` is
+"**Cytotoxice** Natural Killer Cell" (extra trailing "e"). Likely should read
+"Cytotoxic Natural Killer Cell." This typo broke the batch lexical search for
+that row entirely (zero OLS4 hits) — the marker-based match (`CL:0000939`,
+above) was unaffected since it doesn't depend on the name. **Flagging for
+sheet correction, not changed here**, same reasoning as pDC above.
+
+---
+
+## Basophil
+
+**SOULCAP definition:** two sheet rows share the abbreviation `Basophil` (a
+PBMC prep and a WB prep), with slightly different required/ideal columns but
+the same intent: `live/ CD45+ (CD33+|CD123+) (CD193+|FceR1a+|HLA-DR-|CD303-)`,
+excluding CD3- (and CD15-/CD66b- in the WB version's required columns).
+
+| Field | Value |
+|---|---|
+| Proposed CL term | mature basophil |
+| Proposed CL ID | `CL:0000043` |
+| Match type | Exact |
+
+**Rationale:** Originally, **neither** marker-axiom scoring nor the batch
+lexical search found this match — both were checked and both missed it. It
+was found by hand-inspecting [cl_pro_relationships.md](cl_pro_relationships.md)
+directly: `CL:0000043` asserts CD193(high)/FceR1a(high)/CD123(high) positive
+and CD19-/CD3-/CD8- negative — closely matching SOULCAP's required OR-group
+and CD3- exclusion. `soulcap-match` now finds it too (see below).
+
+**Tooling limitation found and fixed:** SOULCAP's marker syntax uses
+OR-groups like `(CD193+|FceR1a+|HLA-DR-|CD303-)`, meaning "at least one of
+these true." `soulcap-match`'s scorer used to treat every marker inside such
+a group as independently **required** (i.e. AND, not OR) — this is why it
+never considered `CL:0000043` a candidate: CL doesn't assert *all four* of
+CD193+/FceR1a+/HLA-DR-/CD303-, so the group was scored as mostly gaps/
+contradictions instead of "satisfied by one alternative." **Fixed** by adding
+`extract_marker_clauses()`, which preserves `|`-joined groups as true OR
+clauses (satisfied by any one alternative; contradicted only if *every*
+alternative is actively contradicted) instead of flattening them — see
+[src/soulcap_cl_mapping/cl_match.py](../src/soulcap_cl_mapping/cl_match.py).
+Re-running `soulcap-match` on this exact profile now ranks `CL:0000043`
+top of the field, showing `CD123+ (1 of 2 alt.)` and `CD193+ (1 of 4 alt.)`
+as matched.
+
+---
+
+## Open follow-ups
+
+- File the `CL:0000623` missing-CD56-axiom gap as a repo issue (see
+  [cl_term_issues.md](cl_term_issues.md)), then upstream to
+  `obophenotype/cell-ontology` once reviewed, following the pattern of
+  issues [#12](https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12)
+  and [#13](https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13).
+- ILC1's missing human-specific CL term gap has been filed as a repo issue —
+  see [cl_term_issues.md](cl_term_issues.md) for the tracking link.
+- NK1 vs. NK3 (CD57-/CD57+) have no CL term distinguishing them yet — worth a
+  second CL gap entry once confirmed against more literature.
+- **Fixed:** the `soulcap-match` scorer's OR-group-as-AND limitation (found
+  via the Basophil case above) — `extract_marker_clauses()` now models
+  `|`-groups as true OR. Worth re-running `--batch --lexical` across all
+  rows and re-checking earlier entries in this report, since other good
+  matches may have been suppressed the same way, not just Basophil's.
+- Two sheet naming typos found (CTNK "Cytotoxice", pDC "Peripheral") need
+  correcting in the Google Sheet master by whoever has edit access — see the
+  DC family section above.
+- Extend this report to the remaining `Marker Combinations` rows once
+  Milestone 2 (literature evidence, Dr. Diehl) covers more cell types.
+
+---
+
+## Monocyte family
+
+**SOULCAP definitions:** Mono (parent, `CD14+/- CD11c+/-` — both variable,
+non-discriminating), CMo (`CD14+ CD16-`), NCMo (`CD14lo/- CD16+`), IntMo
+(`CD14+ CD16hi`). All four share the same Required exclusion string.
+
+| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source |
+|---|---|---|---|---|
+| Mono | monocyte | `CL:0000576` | Exact | OAK-verified (exact label); OLS4 was timing out at lookup time |
+| CMo | classical monocyte | `CL:0000860` | Exact | OAK-verified (exact label) |
+| NCMo | non-classical monocyte | `CL:0000875` | Exact | OAK-verified (exact label) |
+| IntMo | intermediate monocyte | `CL:0002393` | Exact | OAK-verified (exact label) |
+
+**Rationale:** All four are clean name matches, cross-checked with OAK
+(`sqlite:obo:cl`, exact label hits) after OLS4 REST search was returning
+`ReadTimeout` errors when this batch was worked. Marker-axiom scoring
+top-ranked unrelated myelocyte/basophil precursor terms for all four rows
+(shared-negative-marker inflation, the same failure mode documented
+elsewhere in this report) — these are lexical matches, not marker-confirmed.
+
+**CL gap — already tracked, not new:** `CL:0000860`/`CL:0000875`/`CL:0002393`
+currently assert only CCR2 (CD192, high on classical / negative on
+intermediate) and CX3CR1 (high on non-classical) plus lineage-exclusion
+negatives — **none of them assert the CD14/CD16 axioms that actually define
+these three subsets** (per Ziegler-Heitbrock et al. 2010, PMID:20628149).
+This is exactly what repo issue
+[#12](https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12)
+(filed upstream: [CL#3665](https://github.com/obophenotype/cell-ontology/issues/3665))
+already covers — no new issue needed, just citing it here since it directly
+explains why these four rows can only be matched lexically, not confirmed by
+CL's current marker axioms. `CL:0000576` (plain "monocyte") has no marker
+axioms at all in `cl_pro_relationships.tsv` — the same axiom-gap pattern seen
+on other general parent classes (NK, ILC, cDC) — logged in `gaps.tsv`.
+
+**Sheet data issue:** all four rows' `Required exclusion` column reads
+`CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)` — the second group is
+missing a `]` after `CD123hi` (should likely read `([CD123hi]-|CD193-)`,
+matching the pattern used in the cDC/pDC rows). Affects the same 4 rows
+identically since they share this string. Logged in `gaps.tsv`; cannot be
+fixed here (Google Sheet is the source of truth).
+
+---
+
+## Neutrophil / Eosinophil
+
+**SOULCAP definitions:** share `CD3- CD56- CD14lo/- CD123-` exclusion.
+Neutrophil requires `(CD15hi|CD66b+) CD193- CD16hi`; Eosinophil requires
+`(CD15hi|CD66b+) CD193+ CD16-` — differ only in CD193/CD16.
+
+| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source |
+|---|---|---|---|---|
+| Neutrophil | neutrophil | `CL:0000775` | Exact | Lexical + marker (CD66b matched via OR-group; CD19-/CD3- matched) |
+| Eosinophil | eosinophil | `CL:0000771` | Exact | Lexical + marker (CD193+ **directly asserted**, not inferred — strong match) |
+
+**Rationale:** Both are clean lexical matches (OAK-confirmed exact label),
+and unlike the monocyte family, CL *does* assert relevant markers here.
+`CL:0000771` directly asserts CD193 (CCR3) positive — not flagged
+`(inferred only)` — which precisely matches SOULCAP's Eosinophil-defining
+CD193+ requirement; both terms assert CD66b positive, satisfying the
+`(CD15hi|CD66b+)` OR-group shared by both SOULCAP rows. This is one of the
+stronger marker-confirmed matches in this report, not just a lexical pick.
+
+---
+
+## B cell (parent)
+
+**SOULCAP definition:** `(CD14-|CD33-|CD64-) CD3- CD56-` exclusion;
+`live/ CD45+ (CD20+|CD19+)` required phenotypic markers.
+
+| Field | Value |
+|---|---|
+| Proposed CL term | B cell |
+| Proposed CL ID | `CL:0000236` |
+| Match type | Exact |
+
+**Rationale:** Batch lexical search (OLS4) returned **no candidate at all**
+for this row — worth noting as its own small finding: OLS4's REST search
+appears to return nothing useful for the bare two-word query "B cell" (not a
+sheet typo this time; the row's Full Name is exactly "B cell"). Found instead
+via `soulcap-oak-match "B cell"`, which returned `CL:0000236` as a clean
+exact-label/exact-synonym hit. Marker-axiom scoring found no useful
+candidates either (`CL:0000236` has no rows in `cl_pro_relationships.tsv` —
+same parent-class axiom-gap pattern as NK/ILC/cDC/plain-monocyte). Logged in
+`gaps.tsv`.
+
+---
+
+## Plasma cell lineage — ASC / Plasmablast / Plasma Cell
+
+**SOULCAP definitions:** ASC (parent, `CD19+ CD27+/hi CD38hi`), PB
+(`+ CD138-`), PC (`+ CD138+`, ideal `CD20-`).
+
+| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source |
+|---|---|---|---|---|
+| ASC | antibody secreting cell | `CL:0000946` | Exact | Lexical |
+| PB | plasmablast | `CL:0000980` | Exact | Lexical |
+| PC | plasma cell | `CL:0000786` | Exact | Lexical |
+
+**Rationale:** All three are clean exact-name lexical matches. Marker-axiom
+scoring found nothing useful for any of the three (top candidates were
+mouse-nomenclature "B220" memory B cell terms — see the B cell maturation
+tree below for why that pattern recurs across this whole lineage) — these
+are lexical matches, not marker-confirmed. PC's marker top-1 (`CL:0000962`
+Bm2 B cell) showed a conflict on the *ideal* `CD20-` marker; non-disqualifying
+and irrelevant once the correct lexical match is used instead.
+
+---
+
+## B cell maturation tree — Transitional / Mature / Naive / Double-negative
+
+**SOULCAP definitions:** Transitional (parent, **no marker data in the
+sheet at all** — see `gaps.tsv`), T1/T2 B (`CD27- (CD38hi|CD10hi) CD24hi`),
+Mature B (parent, `CD27- CD38lo/-`), T3 (`CD27- (CD38lo/-|CD10lo) CD24+
+IgD+`), Naive (`CD27- (CD38lo/-|CD10-) CD24- IgD+`), BDN (parent, `CD27-
+(CD38lo/-|CD10-) CD24- IgD-`), BDN1–4 (BDN + CD21/CD11c/CD185/IgE
+combinations).
+
+| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source |
+|---|---|---|---|---|
+| T1/T2 B | transitional stage B cell | `CL:0000818` | Broad | OAK-verified — SOULCAP combines T1+T2 into one gate; CL:0000818 is the parent of both `CL:0000958` (T1) and `CL:0000959` (T2), which CL keeps separate |
+| Mature B | mature B cell | `CL:0000785` | Exact | Lexical |
+| T3 | T3 B cell | `CL:0000960` | Exact | Lexical |
+| Naive | naive B cell | `CL:0000788` | Exact | Lexical |
+| BDN | double negative memory B cell | `CL:0000981` | Exact | OAK-verified — batch lexical had wrongly picked `CL:0002103` "**IgG-positive** double negative memory B cell," an overly-specific child term |
+| BDN1 / BDN2 / BDN3 / BDN4 | double negative memory B cell | `CL:0000981` | Broad | No CL subtype terms exist for this DN1–4 scheme — see CL gap below |
+
+**Rationale:** Marker-axiom scoring was useless across this entire tree —
+every row's top candidates were CL terms using **mouse** B-cell-development
+nomenclature (`B220-positive/negative CD38-positive/negative ...`), which
+share enough generic negative markers with SOULCAP's human panel to score
+well without being biologically relevant. All picks above are lexical,
+cross-checked with direct OAK verification wherever the batch lexical output
+looked suspicious.
+
+**CL gap — BDN1–4:** SOULCAP defines four "double negative" B cell subsets
+(BDN1–4) using CD21/CD11c/CD185(CXCR5)/IgE combinations — this is the
+DN1–DN4 atypical/age-associated B cell classification scheme from the
+autoimmunity/aging literature. Direct searches for "DN1 B cell" through
+"DN4 B cell" and "atypical memory B cell" returned **zero CL hits** — CL only
+has the general parent `CL:0000981` "double negative memory B cell," with no
+further subtyping. All four SOULCAP subsets currently collapse to the same
+Broad match. Logged in `gaps.tsv`.
+
+**Note — Transitional (parent):** not mapped here (no marker data to derive
+a match from, and the row is presumably meant as a pure category label like
+Mature B / BDN / Bmem) — see `gaps.tsv` for the existing `no_reasonable_cl_match`
+entry. If a plain label match is wanted despite the empty markers, `CL:0000818`
+"transitional stage B cell" is the obvious lexical candidate, parallel to how
+T1/T2 B was resolved above.
+
+---
+
+## Memory B cell tree
+
+**SOULCAP definitions:** Bmem (parent, `CD27+ CD38lo/-`), then split by
+Ig isotype: IgD only (`IgD+ IgM-`), Unswitched (`IgD+ IgM+`), IgM only
+(`IgD- IgM+`), Switched (parent, `IgD- IgM-`), then IgA/IgG/IgE
+(Switched + single Ig-class positive).
+
+| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Source |
+|---|---|---|---|---|
+| Bmem | memory B cell | `CL:0000787` | Exact | Lexical |
+| IgD only | — | — | — | **No CL match found — see gap below** |
+| Unswitched | unswitched memory B cell | `CL:0000970` | Exact | Lexical, OAK-confirmed |
+| IgM only | IgM memory B cell | `CL:0000971` | Exact | Lexical, OAK-confirmed |
+| Switched | class switched memory B cell | `CL:0000972` | Exact | OAK-verified — batch lexical had wrongly picked `CL:0002117` "**IgG-negative** class switched memory B cell," an overly-specific child term |
+| IgA | IgA memory B cell | `CL:0000973` | Exact | Lexical, OAK-confirmed |
+| IgG | IgG memory B cell | `CL:0000979` | Exact | OAK-verified — batch lexical had wrongly picked `CL:0002117` "**IgG-negative** class switched memory B cell," the **opposite polarity** of what SOULCAP's IgG row defines |
+| IgE | IgE memory B cell | `CL:0000948` | Exact | Lexical, OAK-confirmed |
+
+**Rationale:** Same pattern as the maturation tree — marker scoring found
+nothing useful (mouse B220 terms again), so these are lexical matches. Two
+of the batch's raw lexical picks (Switched, IgG) were caught and corrected
+here: both had landed on `CL:0002117`, a specific IgG-**negative** subtype,
+which is simply wrong for the IgG row (opposite Ig-class polarity) and
+imprecise for Switched (too specific — excludes IgG-switched cells from the
+"switched" parent category, which shouldn't exclude any Ig class).
+
+**CL gap — "IgD only" memory B cell:** SOULCAP distinguishes IgD⁺IgM⁻
+("IgD only") from IgD⁺IgM⁺ ("Unswitched") memory B cells as two separate
+populations. Direct searches for "IgD-positive memory B cell" and "IgD only
+memory B cell" returned **zero CL hits**; the only IgD-related term found is
+`CL:0001053` "IgD-negative memory B cell" — the **opposite** polarity, not a
+match. This looks like a genuine CL gap (no term for the IgD⁺IgM⁻ subset)
+rather than a naming mismatch — flagged, not mapped. Logged in `gaps.tsv`.
+
+---
+
+# T cell tree
+
+The T cell branch is much larger (83 remaining rows) and includes 26 rows
+with **no `Full Name` populated in the sheet at all** — those are documented
+separately below rather than guessed at. Marker-axiom scoring was uniformly
+useless across every row in this branch (top candidates were consistently
+unrelated myeloid/NK terms — `Gr1-low myeloid suppressor cell`, `myeloid
+dendritic cell, human` — sharing generic lineage-exclusion markers with
+almost every SOULCAP T cell row). Every mapping below is lexical/name-based,
+verified directly via OAK rather than trusted from the raw batch output,
+since the raw lexical picks were wrong or missing for a large fraction of
+this branch too (see notes per group).
+
+## Core T cell lineage
+
+| SOULCAP | Proposed CL term | Proposed CL ID | Match type |
+|---|---|---|---|
+| T cell | T cell | `CL:0000084` | Exact |
+| TCRab | alpha-beta T cell | `CL:0000789` | Exact |
+| TCRgd | gamma-delta T cell | `CL:0000798` | Exact |
+| iNKT | mature NK T cell | `CL:0000814` | Exact |
+| MAIT | mucosal-associated invariant T cell | `CL:0000940` | Exact |
+| CD4+ TCRab T cell | CD4-positive, alpha-beta T cell | `CL:0000624` | Exact |
+| CD8+ TCRab T cell | CD8-positive, alpha-beta T cell | `CL:0000625` | Exact |
+| CD4-/CD8- TCRgd | CD4-negative, CD8-negative gamma-delta T cell | `CL:0000803` | Exact |
+
+**Note — iNKT / `CL:0000814`:** this is the **same term** already flagged in
+[repo issue #13](https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13)
+as needing a rename to "iNKT cell" (currently labelled "mature NK T cell,"
+filed upstream, awaiting CL maintainer review — see `cl_term_issues.md`). The
+mapping is correct either way; just noting it inherits that pending
+correction.
+
+## Combined-lineage (αβ+γδ) and double-positive/double-negative gaps
+
+SOULCAP has four rows that combine alpha-beta **and** gamma-delta T cells
+under one CD4/CD8 gate (`CD4+ T cell`, `CD8+ T cell`, `CD4+/CD8+ T cell`,
+`CD4-/CD8- T cell`), plus double-positive and double-negative alpha-beta and
+gamma-delta variants. CL organizes CD4/CD8 status **primarily under the
+alpha-beta lineage** and does not have combined αβ+γδ terms, a clean
+double-positive alpha-beta term, or a *peripheral* (non-thymic) double-negative
+alpha-beta term — direct searches for "double positive T cell," "double
+negative alpha-beta T cell," and "CD4-positive T cell" (unqualified) all
+returned nothing or only thymocyte-stage terms (thymocytes are the wrong
+tissue/maturity stage for a blood/PBMC flow panel).
+
+| SOULCAP | Proposed CL term | Proposed CL ID | Match type | Note |
+|---|---|---|---|---|
+| CD4+ T cell | CD4-positive, alpha-beta T cell | `CL:0000624` | Broad | Alpha-beta dominates the CD4+ compartment; CL has no combined αβ+γδ CD4+ term |
+| CD8+ T cell | CD8-positive, alpha-beta T cell | `CL:0000625` | Broad | Same reasoning |
+| CD4+/CD8+ T cell | alpha-beta T cell | `CL:0000789` | Broad — **gap** | No CD4+CD8+ double-positive term found at all (peripheral DP T cells are themselves biologically unusual) |
+| CD4-/CD8- T cell | T cell | `CL:0000084` | Broad — **gap** | No peripheral (non-thymic) double-negative term spanning both TCR types |
+| CD4+/CD8+ TCRab T cell | alpha-beta T cell | `CL:0000789` | Broad — **gap** | Same DP gap, alpha-beta-restricted |
+| CD4-/CD8- TCRab T cell | alpha-beta T cell | `CL:0000789` | Broad — **gap** | Only `CL:0002489` "double negative **thymocyte**" found — wrong tissue/stage |
+| CD4+ TCRgd T cell | gamma-delta T cell | `CL:0000798` | Broad — **gap** | CD4+ gd T cells are atypical/rare in normal blood; no CL term found |
+| CD8+ TCRgd T cell | gamma-delta T cell | `CL:0000798` | Broad — **gap** | No CL term found |
+| CD4+/CD8+ TCRgd | gamma-delta T cell | `CL:0000798` | Broad — **gap** | No CL term found |
+
+All seven "gap" rows above are logged in `gaps.tsv` as one grouped entry
+(CL's CD4/CD8 vocabulary being alpha-beta-centric), rather than seven
+separate entries, since it's the same underlying structural gap.
+
+## CD56+ T cell family
+
+SOULCAP defines 13 CD56+ T cell variants crossing CD56 positivity with
+CD4/CD8/DP/DN status and TCRab/TCRgd lineage. CL has exactly **one** term at
+this level of granularity:
+
+| SOULCAP | Proposed CL term | Proposed CL ID | Match type |
+|---|---|---|---|
+| CD56+ T cell, CD56+ CD4 T cell, CD56+ CD8 T cell, CD56+ TCRab, CD56+ CD4+ TCRab, CD56+ CD8+ TCRab, CD56+ CD4+/CD8+ TCRab, CD56+ CD4-/CD8- TCRab, CD56+ TCRgd, CD56+ CD4+ TCRgd, CD56+ CD8+ TCRgd, CD56+ CD4+/CD8+ TCRgd, CD56+ CD8-/CD8- TCRgd | mature NK T cell, human | `CL:4052055` | Broad (all 13) |
+
+**Rationale:** `CL:4052055`'s current label is "Mature NK T cell, human" —
+this is the **other** term from repo issue #13, already proposed for renaming
+to "CD56-positive T cell, human" (filed upstream as
+[CL#3663](https://github.com/obophenotype/cell-ontology/issues/3663), awaiting
+review). It is the correct conceptual match for this whole family; CL simply
+doesn't subdivide "CD56-positive T cell" by CD4/CD8/TCR-type the way
+SOULCAP's panel does, so all 13 rows collapse to the same Broad match. The
+raw batch lexical output was **unreliable** for this family (results ranged
+from `hematopoietic stem cell` to `mature neutrophil` — direct OAK
+verification via "mature NK T cell, human" was necessary, not optional).
+Logged as one grouped `cl_axiom_gap`-style entry in `gaps.tsv`.
+
+## Naive / central memory / effector memory / TEMRA tree
+
+SOULCAP crosses four differentiation states (naive, central memory Tcm,
+effector memory Tem, CD45RA+ effector memory/TEMRA) with CD4/CD8 status and,
+separately, TCRab/TCRgd lineage — 24 rows. CL has clean, well-established
+terms for the **CD4/CD8 × alpha-beta** combinations; it does not have
+gamma-delta-specific or lineage-combined (αβ+γδ) versions of any of them.
+
+| SOULCAP | Proposed CL term | Proposed CL ID | Match type |
+|---|---|---|---|
+| Tnaive (general) | naive T cell | `CL:0000898` | Exact |
+| CD4+ TCRab Tnaive | naive thymus-derived CD4-positive, alpha-beta T cell | `CL:0000895` | Exact |
+| CD8+ TCRab Tnaive | naive thymus-derived CD8-positive, alpha-beta T cell | `CL:0000900` | Exact |
+| CD4+ TCRab Tcm | central memory CD4-positive, alpha-beta T cell | `CL:0000904` | Exact |
+| CD8+ TCRab Tcm | central memory CD8-positive, alpha-beta T cell | `CL:0000907` | Exact |
+| CD4+ TCRab Tem | effector memory CD4-positive, alpha-beta T cell | `CL:0000905` | Exact |
+| CD8+ TCRab Tem | effector memory CD8-positive, alpha-beta T cell | `CL:0000913` | Exact |
+| CD4+ TCRab Temra | effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated | `CL:4030002` | Exact |
+| CD4+ Tnaive (general) | naive thymus-derived CD4-positive, alpha-beta T cell | `CL:0000895` | Broad |
+| CD8+ Tnaive (general) | naive thymus-derived CD8-positive, alpha-beta T cell | `CL:0000900` | Broad |
+| CD4+ Tcm (general) | central memory CD4-positive, alpha-beta T cell | `CL:0000904` | Broad |
+| CD8+ Tcm (general) | central memory CD8-positive, alpha-beta T cell | `CL:0000907` | Broad |
+| CD4+ Tem (general) | effector memory CD4-positive, alpha-beta T cell | `CL:0000905` | Broad |
+| CD8+ Tem (general) | effector memory CD8-positive, alpha-beta T cell | `CL:0000913` | Broad |
+| CD4+ Temra (general) | effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated | `CL:4030002` | Broad |
+| Tcm (general, no CD4/CD8) | T cell | `CL:0000084` | Broad — **gap** |
+| Tem (general, no CD4/CD8) | T cell | `CL:0000084` | Broad — **gap** |
+| Temra (general, no CD4/CD8) | T cell | `CL:0000084` | Broad — **gap** |
+| CD4+ TCRgd Tnaive, CD4+ TCRgd Tcm, CD4+ TCRgd Tem, CD4+ TCRgd Temra | gamma-delta T cell | `CL:0000798` | Broad — **gap** |
+| CD8+ TCRgd Tnaive, CD8+ TCRgd Tcm, CD8+ TCRgd Tem | gamma-delta T cell | `CL:0000798` | Broad — **gap** |
+| CD8+ Temra (general), CD8+ TCRab Temra | effector memory CD8-positive, alpha-beta T cell | `CL:0000913` | Broad — **gap** |
+
+**Rationale:** Direct OAK searches confirm CL has **no** generic
+"central/effector memory T cell" term spanning both CD4 and CD8 (only the
+CD4-specific and CD8-specific versions exist), **no** gamma-delta-specific
+differentiation-state terms at all, and — asymmetrically — **no CD8+-specific
+TEMRA term** with the "terminally differentiated" qualifier that exists for
+CD4+ (`CL:4030002`). That last asymmetry is worth a closer look; not filed as
+a formal CL gap yet since it needs a second check against CL's own hierarchy
+before concluding it's a genuine omission rather than something named
+differently. All "gap" rows above are logged in `gaps.tsv`, grouped by
+category rather than one row each.
+
+## Rows with no `Full Name` in the sheet — not mapped
+
+26 rows in this branch have an **empty `Full Name` field** in the master
+sheet (`Conv TCRab` and its CD4+/CD8+/DP/DN children; `T helper`, `T
+cytotoxic`, `Tfh`, `CD4 PanT helper`, `CD4 PanT Treg`; `ConT Treg-like`,
+`ConT Tfh-like`, `Th1-like` / `Th2-like` / `Th9-like` / `Th17-like`; and the
+`Vg9`/`Vd1`/`Vd2`/`Vd3`/`Vg9 Vd1`/`Vg9 Vd2` gamma-delta TCR-usage subsets).
+**Not mapped here** — inventing a name for an unnamed row isn't a call this
+report should make.
+
+Two things worth flagging explicitly:
+
+1. **A likely data bug**, not just a missing name: `Th1-like`, `Th2-like`,
+   `Th9-like`, and `Th17-like` each appear **twice** in the sheet. One copy
+   (parented under "CD4 ConT") has iNKT-style `TCRVa24-Ja18`/`CD1d-a-GalCer`
+   marker strings that look like they were copy-pasted from an adjacent iNKT
+   row rather than genuine Th-subset markers. The other copy (no parent) has
+   the biologically-correct Th-subset chemokine receptor panel (`CD183`/CXCR3,
+   `CD185`/CXCR5, `CD194`/CCR4, `CD196`/CCR6) matching the classic
+   Th1/Th2/Th9/Th17 definitions. This looks like a genuine sheet error, not
+   two intentional variants.
+2. **For when these get named**, a few obvious CL matches are already
+   confirmed and ready: `T helper` → `CL:0000912` "helper T cell"; `T
+   cytotoxic` → `CL:0000910` "cytotoxic T cell". The rest would need their
+   own verification once named.
+
+Logged as one grouped entry in `gaps.tsv` rather than 26 separate rows.
+rather than a naming mismatch — flagged, not mapped. Logged in `gaps.tsv`.
diff --git a/reports/candidate_cl_mappings.sssom.tsv b/reports/candidate_cl_mappings.sssom.tsv
new file mode 100644
index 0000000..23356a8
--- /dev/null
+++ b/reports/candidate_cl_mappings.sssom.tsv
@@ -0,0 +1,88 @@
+# curie_map:
+#   CL: http://purl.obolibrary.org/obo/CL_
+#   SOULCAP: https://soulcap.org/cell_type/
+#   semapv: https://w3id.org/semapv/vocab/
+#   skos: http://www.w3.org/2004/02/skos/core#
+# license: https://creativecommons.org/licenses/by/4.0/
+# mapping_set_id: https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/reports/candidate_cl_mappings.sssom.tsv
+subject_id	subject_label	predicate_id	object_id	object_label	mapping_justification	confidence	mapping_cardinality	comment	mapping_tool
+SOULCAP:NK	Natural Killer Cell	skos:exactMatch	CL:0000623	natural killer cell	semapv:ManualMappingCuration	0.55	1:1	CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the defining positive CD56 marker is absent — a documented CL gap (cl_term_issues.md), not confirmed here. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:NK2	Natural Killer Cell 2	skos:exactMatch	CL:0000938	CD16-negative, CD56-bright natural killer cell, human	semapv:ManualMappingCuration	0.9	1:1	Supported by directly-asserted CL marker axiom(s).	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CTNK	Cytotoxic Natural Killer Cell	skos:exactMatch	CL:0000939	CD16-positive, CD56-dim natural killer cell, human	semapv:ManualMappingCuration	0.9	n:1	Supported by directly-asserted CL marker axiom(s).	soulcap-match + soulcap-cl-matching skill
+SOULCAP:NK1	Natural Killer Cell 1	skos:broadMatch	CL:0000939	CD16-positive, CD56-dim natural killer cell, human	semapv:ManualMappingCuration	0.75	n:1	CL does not distinguish CD57 status within this subtype. Supported by directly-asserted CL marker axiom(s).	soulcap-match + soulcap-cl-matching skill
+SOULCAP:NK3	Natural Killer Cell 3	skos:broadMatch	CL:0000939	CD16-positive, CD56-dim natural killer cell, human	semapv:ManualMappingCuration	0.75	n:1	CL does not distinguish CD57 status within this subtype. Supported by directly-asserted CL marker axiom(s).	soulcap-match + soulcap-cl-matching skill
+SOULCAP:ILCp	Innate Lymphoid Cell Progenitor	skos:broadMatch	CL:0001074	CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human	semapv:ManualMappingCuration	0.3	1:1	SOULCAP profile does not test CD34; CL:0001073 (CD34-negative) and CL:0001082 (immature innate lymphoid cell) are equally marker-consistent alternatives, not ruled out. Supported by directly-asserted CL marker axiom(s).	soulcap-match + soulcap-cl-matching skill
+SOULCAP:ILC	Innate Lymphoid Cell	skos:exactMatch	CL:0001065	innate lymphoid cell	semapv:ManualMappingCuration	0.55	1:1	Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, not CL-marker-supported. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:ILC1	Innate Lymphoid Cell 1	skos:exactMatch	CL:0001067	group 1 innate lymphoid cell	semapv:ManualMappingCuration	0.55	1:1	Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only. No human-specific CL term exists for group 1 (unlike group 2/3); filed as CL gap, repo issue #14. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:ILC2	Innate Lymphoid Cell 2	skos:exactMatch	CL:0001081	group 2 innate lymphoid cell, human	semapv:ManualMappingCuration	0.55	1:1	Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had picked the wrong-species term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:ILC3	Innate Lymphoid Cell 3	skos:exactMatch	CL:0001078	group 3 innate lymphoid cell, human	semapv:ManualMappingCuration	0.55	1:1	Marker-axiom scoring found nothing useful for this lineage; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had over-specified to an NKp44+ subtype. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:cDC	Conventional Dendritic Cell	skos:exactMatch	CL:0000990	conventional dendritic cell	semapv:ManualMappingCuration	0.55	1:1	Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:cDC1	Conventional Dendritic Cell 1	skos:exactMatch	CL:0002394	CD141-positive myeloid dendritic cell	semapv:ManualMappingCuration	0.55	1:1	Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed by direct OLS4 lookup after the batch lexical search had wrongly assigned cDC1 the same term as cDC2. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:cDC2	Conventional Dendritic Cell 2	skos:exactMatch	CL:0002399	CD1c-positive myeloid dendritic cell	semapv:ManualMappingCuration	0.55	1:1	Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only, confirmed correct by cross-check against cDC1. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:pDC	Plasmacytoid Dendritic Cell	skos:exactMatch	CL:0001058	plasmacytoid dendritic cell, human	semapv:ManualMappingCuration	0.55	1:1	Marker-axiom scoring returned unrelated candidates; match is lexical/name-based only. Sheet's Full Name reads 'Peripheral Dendritic Cell' (likely a typo for 'Plasmacytoid'); not yet corrected at source. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:Basophil_(PBMC)	Basophil	skos:exactMatch	CL:0000043	mature basophil	semapv:ManualMappingCuration	0.6	n:1	Supported only by inferred (not directly asserted) CL marker axioms — treat with lower confidence than a directly-asserted match.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:Basophil_(WB)	Basophil	skos:exactMatch	CL:0000043	mature basophil	semapv:ManualMappingCuration	0.6	n:1	Supported only by inferred (not directly asserted) CL marker axioms — treat with lower confidence than a directly-asserted match.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:Mono	Monocyte	skos:exactMatch	CL:0000576	monocyte	semapv:ManualMappingCuration	0.55	1:1	OAK-verified exact label match (OLS4 was timing out); CL:0000576 has no marker axioms recorded at all. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CMo	Classical Monocyte	skos:exactMatch	CL:0000860	classical monocyte	semapv:ManualMappingCuration	0.55	1:1	OAK-verified exact label match. CL:0000860 asserts only CCR2 (CD192) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:NCMo	Non-classical Monocyte	skos:exactMatch	CL:0000875	non-classical monocyte	semapv:ManualMappingCuration	0.55	1:1	OAK-verified exact label match. CL:0000875 asserts only CX3CR1 and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:IntMo	Intermediate Monocyte	skos:exactMatch	CL:0002393	intermediate monocyte	semapv:ManualMappingCuration	0.55	1:1	OAK-verified exact label match. CL:0002393 asserts only CCR2 (CD192, negative) and lineage negatives, not the CD14/CD16 axioms that actually define this subset — already tracked by repo issue #12. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:Neutrophil	Neutrophil	skos:exactMatch	CL:0000775	neutrophil	semapv:ManualMappingCuration	0.9	1:1	Supported by directly-asserted CL marker axiom(s).	soulcap-match + soulcap-cl-matching skill
+SOULCAP:Eosinophil	Eosinophil	skos:exactMatch	CL:0000771	eosinophil	semapv:ManualMappingCuration	0.9	1:1	CD193 (CCR3) positive is directly asserted (not inferred) on CL:0000771, precisely matching SOULCAP's defining CD193+ requirement — one of the stronger marker-confirmed matches in this set. Supported by directly-asserted CL marker axiom(s).	soulcap-match + soulcap-cl-matching skill
+SOULCAP:B_cell	B cell	skos:exactMatch	CL:0000236	B cell	semapv:ManualMappingCuration	0.55	1:1	OLS4 REST search returned zero hits for this exact query; found instead via OAK. CL:0000236 has no marker axioms recorded. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:ASC	Antibody Secreting Cell	skos:exactMatch	CL:0000946	antibody secreting cell	semapv:ManualMappingCuration	0.55	1:1	Lexical match; marker scoring found nothing useful (mouse B220-nomenclature terms scored highest instead). CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:PB	Plasmablast	skos:exactMatch	CL:0000980	plasmablast	semapv:ManualMappingCuration	0.55	1:1	Lexical match; marker scoring found nothing useful. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:PC	Plasma Cell	skos:exactMatch	CL:0000786	plasma cell	semapv:ManualMappingCuration	0.55	1:1	Lexical match; marker scoring found nothing useful. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:T1/T2_B	Transitonal B cell 1 and 2	skos:broadMatch	CL:0000818	transitional stage B cell	semapv:ManualMappingCuration	0.4	1:1	SOULCAP combines T1+T2 into one gate; CL keeps CL:0000958 (T1) and CL:0000959 (T2) separate under this parent term. Sheet's Full Name has a typo ('Transitonal'). CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:Mature_B	Mature B cell	skos:exactMatch	CL:0000785	mature B cell	semapv:ManualMappingCuration	0.55	1:1	Lexical match; marker scoring found nothing useful. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:T3	Transitional B cell 3	skos:exactMatch	CL:0000960	T3 B cell	semapv:ManualMappingCuration	0.55	1:1	Lexical match; marker scoring found nothing useful. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:Naive	Naive B cell	skos:exactMatch	CL:0000788	naive B cell	semapv:ManualMappingCuration	0.55	1:1	Lexical match; marker scoring found nothing useful. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:BDN	Double Negative B cells	skos:exactMatch	CL:0000981	double negative memory B cell	semapv:ManualMappingCuration	0.55	n:1	OAK-verified; batch lexical search had wrongly picked CL:0002103, an IgG-positive-specific child term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:BDN1	Double Negative B cell 1	skos:broadMatch	CL:0000981	double negative memory B cell	semapv:ManualMappingCuration	0.4	n:1	No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:BDN2	Double Negative B cell 2	skos:broadMatch	CL:0000981	double negative memory B cell	semapv:ManualMappingCuration	0.4	n:1	No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:BDN3	Double Negative B cell 3	skos:broadMatch	CL:0000981	double negative memory B cell	semapv:ManualMappingCuration	0.4	n:1	No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:BDN4	Double Negative B cell 4	skos:broadMatch	CL:0000981	double negative memory B cell	semapv:ManualMappingCuration	0.4	n:1	No CL term exists for the DN1-4 atypical B cell scheme (CD21/CD11c/CD185/IgE-based); collapses to the general parent. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:Bmem	Memory B cell	skos:exactMatch	CL:0000787	memory B cell	semapv:ManualMappingCuration	0.55	1:1	Lexical match; marker scoring found nothing useful. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:Unswitched	Unswitched Memory B cell	skos:exactMatch	CL:0000970	unswitched memory B cell	semapv:ManualMappingCuration	0.55	1:1	Lexical match, OAK-confirmed. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:IgM_only	IgM-only Memory B cell	skos:exactMatch	CL:0000971	IgM memory B cell	semapv:ManualMappingCuration	0.55	1:1	Lexical match, OAK-confirmed. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:Switched	Switched Memory B cell	skos:exactMatch	CL:0000972	class switched memory B cell	semapv:ManualMappingCuration	0.55	1:1	OAK-verified; batch lexical search had wrongly picked CL:0002117, an IgG-negative-specific child term (too narrow for the general Switched parent, which shouldn't exclude any Ig class). CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:IgA	IgA-Class Switched B cell	skos:exactMatch	CL:0000973	IgA memory B cell	semapv:ManualMappingCuration	0.55	1:1	Lexical match, OAK-confirmed. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:IgG	IgG-Class Switched B cell	skos:exactMatch	CL:0000979	IgG memory B cell	semapv:ManualMappingCuration	0.55	1:1	OAK-verified; batch lexical search had wrongly picked CL:0002117 'IgG-negative class switched memory B cell' — the opposite polarity of what this row defines. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:IgE	IgE-Class Switched B cell	skos:exactMatch	CL:0000948	IgE memory B cell	semapv:ManualMappingCuration	0.55	1:1	Lexical match, OAK-confirmed. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:T_cell	T lymphocyte	skos:exactMatch	CL:0000084	T cell	semapv:ManualMappingCuration	0.55	n:1	OAK-verified; marker scoring returned unrelated myeloid terms. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:TCRab	alpha/beta T cell	skos:exactMatch	CL:0000789	alpha-beta T cell	semapv:ManualMappingCuration	0.55	n:1	OAK-verified; marker scoring returned unrelated myeloid terms. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:TCRgd	gamma/delta T cell	skos:exactMatch	CL:0000798	gamma-delta T cell	semapv:ManualMappingCuration	0.55	n:1	OAK-verified; marker scoring returned unrelated myeloid terms. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:iNKT	Invariant Natural Killer T cell	skos:exactMatch	CL:0000814	mature NK T cell	semapv:ManualMappingCuration	0.55	1:1	OAK-verified. Same term flagged in repo issue #13 for a rename to 'iNKT cell' (filed upstream, awaiting review) — mapping is correct either way. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:MAIT	Mucosal-associated Invariant T cell	skos:exactMatch	CL:0000940	mucosal-associated invariant T cell	semapv:ManualMappingCuration	0.55	1:1	Lexical match, OAK-confirmed. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD4+_TCRab_T_cell	CD4+ alpha/beta T cell	skos:exactMatch	CL:0000624	CD4-positive, alpha-beta T cell	semapv:ManualMappingCuration	0.55	n:1	OAK-verified. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD8+_TCRab_T_cell	CD8+ alpha/beta T cell	skos:exactMatch	CL:0000625	CD8-positive, alpha-beta T cell	semapv:ManualMappingCuration	0.55	n:1	OAK-verified. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD4-/CD8-_TCRgd	CD4-/CD8- gamma/delta T cell	skos:exactMatch	CL:0000803	CD4-negative, CD8-negative gamma-delta T cell	semapv:ManualMappingCuration	0.55	1:1	OAK-verified; double-negative is the classical gamma-delta T cell phenotype. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD4+_T_cell	alpha/beta and gamma/delta CD4+ T cells	skos:broadMatch	CL:0000624	CD4-positive, alpha-beta T cell	semapv:ManualMappingCuration	0.4	n:1	CL has no combined alpha-beta+gamma-delta CD4+ term; alpha-beta dominates the CD4+ compartment. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD8+_T_cell	alpha/beta and gamma/delta CD8+ T cells	skos:broadMatch	CL:0000625	CD8-positive, alpha-beta T cell	semapv:ManualMappingCuration	0.4	n:1	Same reasoning as CD4+ T cell. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD4+/CD8+_T_cell	alpha/beta and gamma/delta CD4+ and CD8+ T cells	skos:broadMatch	CL:0000789	alpha-beta T cell	semapv:ManualMappingCuration	0.3	n:1	No CD4+CD8+ double-positive CL term found at all; peripheral DP T cells are themselves biologically unusual. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD4-/CD8-_T_cell	alpha/beta and gamma/delta CD4- and CD8- T cells	skos:broadMatch	CL:0000084	T cell	semapv:ManualMappingCuration	0.3	n:1	No peripheral (non-thymic) double-negative term spanning both TCR types; only a thymocyte-stage term exists (wrong tissue). CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD4+/CD8+_TCRab_T_cell	CD4+ and CD8+ alpha/beta T cell	skos:broadMatch	CL:0000789	alpha-beta T cell	semapv:ManualMappingCuration	0.3	n:1	No CD4+CD8+ double-positive alpha-beta term found. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD4-/CD8-_TCRab_T_cell	CD4- and CD8- alpha/beta T cell	skos:broadMatch	CL:0000789	alpha-beta T cell	semapv:ManualMappingCuration	0.3	n:1	Only CL:0002489 'double negative thymocyte' found — wrong tissue/maturity stage for a blood/PBMC panel. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD4+_TCRgd_T_cell	CD4+ gamma/delta T cell	skos:broadMatch	CL:0000798	gamma-delta T cell	semapv:ManualMappingCuration	0.3	n:1	CD4+ gamma-delta T cells are atypical/rare; no CL term found. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD8+_TCRgd_T_cell	CD8+ gamma/delta T cell	skos:broadMatch	CL:0000798	gamma-delta T cell	semapv:ManualMappingCuration	0.3	n:1	No CD8+-specific gamma-delta CL term found. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD4+/CD8+_TCRgd	CD4+/CD8+ gamma/delta T cell	skos:broadMatch	CL:0000798	gamma-delta T cell	semapv:ManualMappingCuration	0.3	n:1	No CD4+CD8+ double-positive gamma-delta term found. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD56+_T_cell	CD56+ T cell	skos:broadMatch	CL:4052055	mature NK T cell, human	semapv:ManualMappingCuration	0.4	n:1	Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD56+_CD4_T_cell	CD56+ CD4 T cell	skos:broadMatch	CL:4052055	mature NK T cell, human	semapv:ManualMappingCuration	0.4	n:1	Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD56+_CD8_T_cell	CD56+ CD8 T cell	skos:broadMatch	CL:4052055	mature NK T cell, human	semapv:ManualMappingCuration	0.4	n:1	Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD56+_TCRab	CD56+ alpha/beta T cell	skos:broadMatch	CL:4052055	mature NK T cell, human	semapv:ManualMappingCuration	0.4	n:1	Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD56+_CD4+_TCRab	CD56+ CD4+ alpha/beta T cell	skos:broadMatch	CL:4052055	mature NK T cell, human	semapv:ManualMappingCuration	0.4	n:1	Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD56+_CD8+_TCRab	CD56+ CD8+ alpha/beta T cell	skos:broadMatch	CL:4052055	mature NK T cell, human	semapv:ManualMappingCuration	0.4	n:1	Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD56+_CD4+/CD8+_TCRab	CD56+ CD4+/CD8+ alpha/beta T cell	skos:broadMatch	CL:4052055	mature NK T cell, human	semapv:ManualMappingCuration	0.4	n:1	Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD56+_CD4-/CD8-_TCRab	CD56+ CD4-/CD8- alpha/beta T cell	skos:broadMatch	CL:4052055	mature NK T cell, human	semapv:ManualMappingCuration	0.4	n:1	Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD56+_TCRgd	CD56+ gamma/delta T cell	skos:broadMatch	CL:4052055	mature NK T cell, human	semapv:ManualMappingCuration	0.4	n:1	Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD56+_CD4+_TCRgd	CD56+ CD4+ gamma/delta T cell	skos:broadMatch	CL:4052055	mature NK T cell, human	semapv:ManualMappingCuration	0.4	n:1	Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD56+_CD8+_TCRgd	CD56+ CD8+ gamma/delta T cell	skos:broadMatch	CL:4052055	mature NK T cell, human	semapv:ManualMappingCuration	0.4	n:1	Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD56+_CD4+/CD8+_TCRgd	CD56+ CD4+/CD8+ gamma/delta T cell	skos:broadMatch	CL:4052055	mature NK T cell, human	semapv:ManualMappingCuration	0.4	n:1	Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD56+_CD8-/CD8-_TCRgd	CD56+ CD8-/CD8- gamma/delta T cell	skos:broadMatch	CL:4052055	mature NK T cell, human	semapv:ManualMappingCuration	0.4	n:1	Same term flagged in repo issue #13 for a rename to 'CD56-positive T cell, human' (filed upstream, awaiting review). CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's panel does, so all 13 CD56+ T cell rows collapse to this one term. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:Tnaive	Naive alpha/beta and gamma/delta T cell	skos:exactMatch	CL:0000898	naive T cell	semapv:ManualMappingCuration	0.55	1:1	OAK-verified; the one generic (non-CD4/CD8-split) differentiation-state term that does exist in CL. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD4+_TCRab_Tnaive	CD4+ naive alpha/beta T cell	skos:exactMatch	CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	semapv:ManualMappingCuration	0.55	1:1	OAK-verified. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD8+_TCRab_Tnaive	CD8+ naive alpha/beta T cell	skos:exactMatch	CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	semapv:ManualMappingCuration	0.55	1:1	OAK-verified. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD4+_TCRab_Tcm	CD4+ central memory alpha/beta T cell	skos:exactMatch	CL:0000904	central memory CD4-positive, alpha-beta T cell	semapv:ManualMappingCuration	0.55	1:1	OAK-verified. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD8+_TCRab_Tcm	CD8+ central memory alpha/beta T cell	skos:exactMatch	CL:0000907	central memory CD8-positive, alpha-beta T cell	semapv:ManualMappingCuration	0.55	1:1	OAK-verified. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD4+_TCRab_Tem	CD4+ effector memory alpha/beta T cell	skos:exactMatch	CL:0000905	effector memory CD4-positive, alpha-beta T cell	semapv:ManualMappingCuration	0.55	1:1	OAK-verified. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD8+_TCRab_Tem	CD8+ effector memory alpha/beta T cell	skos:exactMatch	CL:0000913	effector memory CD8-positive, alpha-beta T cell	semapv:ManualMappingCuration	0.55	1:1	OAK-verified. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
+SOULCAP:CD4+_TCRab_Temra	CD4+ CD45RA+ effector memory alpha/beta T cell	skos:exactMatch	CL:4030002	effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated	semapv:ManualMappingCuration	0.55	1:1	OAK-verified. No CD8+-specific counterpart with this 'terminally differentiated' qualifier was found — see gaps.tsv. CL has no marker axiom recorded for this term; match is based on lexical/name correspondence (and literature where available), not confirmed CL markers.	soulcap-match + soulcap-cl-matching skill
diff --git a/reports/candidate_cl_mappings_agreement.tsv b/reports/candidate_cl_mappings_agreement.tsv
new file mode 100644
index 0000000..1132d1a
--- /dev/null
+++ b/reports/candidate_cl_mappings_agreement.tsv
@@ -0,0 +1,128 @@
+abbreviation	full_name	parent	type_of_match	existing_cl_id	marker_cl_id	marker_cl_label	marker_score	marker_conflict	marker_note	lexical_cl_id	lexical_cl_label	lexical_note	agreement
+NK	Natural Killer Cell		Exact		CL:0002338	CD56-positive, CD161-positive immature natural killer cell, human	23			CL:0000623	natural killer cell		no
+NK2	Natural Killer Cell 2	NK	Surface Only (SO)		CL:0000938	CD16-negative, CD56-bright natural killer cell, human	23			CL:4052052	uterine natural killer cell 2, human		no
+CTNK	Cytotoxice Natural Killer Cell	NK	SO and Cytokine		CL:0000939	CD16-positive, CD56-dim natural killer cell, human	23					no CL hits	no
+NK1	Natural Killer Cell 1	CTNK	SO and TF		CL:0000939	CD16-positive, CD56-dim natural killer cell, human	23			CL:4052051	uterine natural killer cell 1, human		no
+NK3	Natural Killer Cell 3	CTNK	TF ONLY		CL:0000939	CD16-positive, CD56-dim natural killer cell, human	23			CL:4052053	uterine natural killer cell 3, human		no
+ILCp	Innate Lymphoid Cell Progenitor		Surface Only (SO)		CL:0001073	CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human	15			CL:0001082	immature innate lymphoid cell		no
+ILC	Innate Lymphoid Cell		Surface Only (SO)		CL:0001057	myeloid dendritic cell, human	25			CL:0001065	innate lymphoid cell		no
+ILC1	Innate Lymphoid Cell 1	ILC	Surface Only (SO)		CL:0001057	myeloid dendritic cell, human	29			CL:0001067	group 1 innate lymphoid cell		no
+ILC2	Innate Lymphoid Cell 2	ILC	Surface Only (SO)		CL:0001057	myeloid dendritic cell, human	29			CL:0002089	group 2 innate lymphoid cell, mouse		no
+ILC3	Innate Lymphoid Cell 3	ILC	Surface Only (SO)		CL:0002338	CD56-positive, CD161-positive immature natural killer cell, human	29			CL:0001079	NKp44-positive group 3 innate lymphoid cell, human		no
+cDC	Conventional Dendritic Cell		Exact		CL:0002008	CD34-positive, CD38-positive eosinophil progenitor cell	23			CL:0000990	conventional dendritic cell		no
+cDC1	Conventional Dendritic Cell 1	DCM	Exact		CL:0002008	CD34-positive, CD38-positive eosinophil progenitor cell	23			CL:0002399	CD1c-positive myeloid dendritic cell		no
+cDC2	Conventional Dendritic Cell 2	DCM	Exact		CL:0002008	CD34-positive, CD38-positive eosinophil progenitor cell	23			CL:0002399	CD1c-positive myeloid dendritic cell		no
+pDC	Peripheral Dendritic Cell		Exact		CL:0000991	CD11c-negative plasmacytoid dendritic cell	22			CL:4047054	migratory dendritic cell		no
+Basophil	Basophil		Exact		CL:0000614	basophilic myelocyte	18	CD15-/CD66B- (all alt. conflict)		CL:0000767	basophil		no
+Basophil	Basophil		Exact		CL:0000043	mature basophil	17			CL:0000767	basophil		no
+Mono	Monocyte		Exact		CL:0000614	basophilic myelocyte	24			CL:0000576	monocyte		no
+CMo	Classical Monocyte	Mono	Exact		CL:0000614	basophilic myelocyte	28			CL:0000860	classical monocyte		no
+NCMo	Non-classical Monocyte	Mono	Exact		CL:0000769	basophilic metamyelocyte	28			CL:0000875	non-classical monocyte		no
+IntMo	Intermediate Monocyte	Mono	Exact		CL:0000769	basophilic metamyelocyte	28			CL:0002393	intermediate monocyte		no
+Neut	Neutrophil		Exact		CL:0000582	neutrophilic metamyelocyte	22			CL:0000775	neutrophil		no
+Eos	Eosinophil		Exact		CL:0000612	eosinophilic myelocyte	26			CL:0000771	eosinophil		no
+B cell	B cell		Exact		CL:0000819	B-1 B cell	15					OLS4 search failed: HTTPSConnectionPool(host='www.ebi.ac.uk', port=443): Read timed out. (read timeout=15)	no
+ASC	Antibody Secreting Cell		Surface Only (SO)		CL:0002115	B220-positive CD38-positive unswitched memory B cell	23			CL:0000946	antibody secreting cell		no
+PB	Plasmablast	ASC	Surface Only (SO)		CL:0002115	B220-positive CD38-positive unswitched memory B cell	26			CL:0000980	plasmablast		no
+PC	Plasma Cell	ASC	Surface Only (SO)		CL:0000962	Bm2 B cell	16	CD20-		CL:0000786	plasma cell		no
+Transitional	Transitional B cell		Exact						no qualified markers found	CL:0000818	transitional stage B cell		no
+T1/T2 B	Transitonal B cell 1 and 2				CL:0002109	B220-positive CD38-positive naive B cell	23					no CL hits	no
+Mature B	Mature B cell		Exact		CL:0000961	Bm1 B cell	19			CL:0000785	mature B cell		no
+T3	Transitional B cell 3	Mature B	Exact		CL:0000961	Bm1 B cell	19			CL:0000960	T3 B cell		no
+Naive	Naive B cell	Mature B	Exact		CL:0002102	CD38-negative naive B cell	20			CL:0000788	naive B cell		no
+BDN	Double Negative B cells	Mature B	Exact		CL:0002102	CD38-negative naive B cell	19			CL:0002103	IgG-positive double negative memory B cell		no
+BDN1	Double Negative B cell 1	BDN	Exact		CL:0000961	Bm1 B cell	23			CL:0000800	mature gamma-delta T cell		no
+BDN2	Double Negative B cell 2	BDN	Exact		CL:0002102	CD38-negative naive B cell	20			CL:0000806	DN2 thymocyte		no
+BDN3	Double Negative B cell 3	BDN	Exact		CL:0002102	CD38-negative naive B cell	20			CL:0000807	DN3 thymocyte		no
+BDN4	Double Negative B cell 4	BDN	Exact		CL:0000961	Bm1 B cell	23			CL:0000808	DN4 thymocyte		no
+Bmem	Memory B cell		Exact		CL:0002112	B220-positive CD38-negative unswitched memory B cell	24			CL:0000787	memory B cell		no
+IgD only	IgD only Memory B cell	Bmem	Exact		CL:0002112	B220-positive CD38-negative unswitched memory B cell	24			CL:0001053	IgD-negative memory B cell		no
+Unswitched	Unswitched Memory B cell	Bmem	Exact		CL:0002112	B220-positive CD38-negative unswitched memory B cell	25			CL:0000970	unswitched memory B cell		no
+IgM only	IgM-only Memory B cell	Bmem	Exact		CL:0002112	B220-positive CD38-negative unswitched memory B cell	24			CL:0000971	IgM memory B cell		no
+Switched	Switched Memory B cell	Bmem	Exact		CL:0002112	B220-positive CD38-negative unswitched memory B cell	25			CL:0002117	IgG-negative class switched memory B cell		no
+IgA	IgA-Class Switched B cell	Switched	Surface Only (SO)		CL:0002112	B220-positive CD38-negative unswitched memory B cell	24			CL:0000973	IgA memory B cell		no
+IgG	IgG-Class Switched B cell	Switched	Surface Only (SO)		CL:0002112	B220-positive CD38-negative unswitched memory B cell	24			CL:0002117	IgG-negative class switched memory B cell		no
+IgE	IgE-Class Switched B cell	Switched	Surface Only (SO)		CL:0002112	B220-positive CD38-negative unswitched memory B cell	24			CL:0000948	IgE memory B cell		no
+T cell	T lymphocyte		Exact		CL:0002468	Gr1-low myeloid suppressor cell	7			CL:0002103	IgG-positive double negative memory B cell		no
+CD56+ T cell	CD56+ T cell	T cell	Exact		CL:0002468	Gr1-low myeloid suppressor cell	7			CL:0000939	CD16-positive, CD56-dim natural killer cell, human		no
+CD56+ CD4 T cell	CD56+ CD4 T cell	CD4+ T cell	Exact		CL:0002039	immature NK T cell stage I, mouse	9			CL:0000037	hematopoietic stem cell		no
+CD56+ CD8 T cell	CD56+ CD8 T cell	CD8+ T cell	Exact		CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	14			CL:0000037	hematopoietic stem cell		no
+CD56+ TCRab	CD56+ alpha/beta T cell	TCRab	Exact		CL:0002468	Gr1-low myeloid suppressor cell	7			CL:0000096	mature neutrophil		no
+CD56+ CD4+ TCRab	CD56+ CD4+ alpha/beta T cell	CD4+ TCRab T cell	Exact		CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	13			CL:0000096	mature neutrophil		no
+CD56+ CD8+ TCRab	CD56+ CD8+ alpha/beta T cell	CD8+ TCRab T cell	Exact		CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	13			CL:0000096	mature neutrophil		no
+CD56+ CD4+/CD8+ TCRab	CD56+ CD4+/CD8+ alpha/beta T cell	CD4+/CD8+ TCRab T cell	Exact		CL:0002039	immature NK T cell stage I, mouse	9			CL:0000096	mature neutrophil		no
+CD56+ CD4-/CD8- TCRab	CD56+ CD4-/CD8- alpha/beta T cell	CD4-/CD8- TCRab T cell	Exact		CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell	10			CL:0000096	mature neutrophil		no
+CD56+ TCRgd	CD56+ gamma/delta T cell	TCRgd	Exact		CL:0002468	Gr1-low myeloid suppressor cell	7					no CL hits	no
+CD56+ CD4+ TCRgd	CD56+ CD4+ gamma/delta T cell	CD4+ TCRgd T cell	Exact		CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	13					no CL hits	no
+CD56+ CD8+ TCRgd	CD56+ CD8+ gamma/delta T cell	CD8+ TCRgd T cell	Exact		CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	13					no CL hits	no
+CD56+ CD4+/CD8+ TCRgd	CD56+ CD4+/CD8+ gamma/delta T cell	CD4+/CD8+ TCRgd	Exact		CL:0002039	immature NK T cell stage I, mouse	9					no CL hits	no
+CD56+ CD8-/CD8- TCRgd	CD56+ CD8-/CD8- gamma/delta T cell	CD4-/CD8- TCRgd	Exact		CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell	11					no CL hits	no
+iNKT	Invariant Natural Killer T cell	T cell	Exact		CL:0002468	Gr1-low myeloid suppressor cell	7			CL:0000814	mature NK T cell		no
+TCRab	alpha/beta T cell	T cell	Exact		CL:0002468	Gr1-low myeloid suppressor cell	7			CL:0000790	immature alpha-beta T cell		no
+TCRgd	gamma/delta T cell	T cell	Exact		CL:0002468	Gr1-low myeloid suppressor cell	7			CL:0000798	gamma-delta T cell		no
+CD4+ T cell	alpha/beta and gamma/delta CD4+ T cells	T cell	Exact		CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	13			CL:0000794	CD8-positive, alpha-beta cytotoxic T cell		no
+CD8+ T cell	alpha/beta and gamma/delta CD8+ T cells	T cell	Exact		CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	13			CL:0000794	CD8-positive, alpha-beta cytotoxic T cell		no
+CD4+/CD8+ T cell	alpha/beta and gamma/delta CD4+ and CD8+ T cells	T cell	Exact		CL:0002039	immature NK T cell stage I, mouse	9			CL:0000794	CD8-positive, alpha-beta cytotoxic T cell		no
+CD4-/CD8- T cell	alpha/beta and gamma/delta CD4- and CD8- T cells	T cell	Exact		CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell	11			CL:0000794	CD8-positive, alpha-beta cytotoxic T cell		no
+CD4+ TCRab T cell	CD4+ alpha/beta T cell	TCRab	Exact		CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	13			CL:0020033	stem cell memory CD4-positive, alpha-beta T cell		no
+CD8+ TCRab T cell	CD8+ alpha/beta T cell	TCRab	Exact		CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	13			CL:0020034	stem cell memory CD8-positive, alpha-beta T cell		no
+CD4+/CD8+ TCRab T cell	CD4+ and CD8+ alpha/beta T cell	TCRab	Exact		CL:0002039	immature NK T cell stage I, mouse	9			CL:0001203	CD8-positive, alpha-beta memory T cell, CD45RO-positive		no
+CD4-/CD8- TCRab T cell	CD4- and CD8- alpha/beta T cell	TCRab	Exact		CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell	11			CL:0001203	CD8-positive, alpha-beta memory T cell, CD45RO-positive		no
+CD4+ TCRgd T cell	CD4+ gamma/delta T cell	TCRgd	Exact		CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	13			CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell		no
+CD8+ TCRgd T cell	CD8+ gamma/delta T cell	TCRgd	Exact		CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	13			CL:0000802	CD8-alpha alpha positive, gamma-delta intraepithelial T cell		no
+CD4+/CD8+ TCRgd	CD4+/CD8+ gamma/delta T cell	TCRgd	Exact		CL:0002039	immature NK T cell stage I, mouse	9			CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell		no
+CD4-/CD8- TCRgd	CD4-/CD8- gamma/delta T cell	TCRgd	Exact		CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell	10			CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell		yes
+MAIT	Mucosal-associated Invariant T cell	T Lymph	Exact		CL:0002468	Gr1-low myeloid suppressor cell	7			CL:0000940	mucosal-associated invariant T cell		no
+Conv TCRab		T Lymph	Exact		CL:0002468	Gr1-low myeloid suppressor cell	6					no CL hits	no
+CD4+ Conv TCRab		ConT TCRab	Exact		CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	12					no CL hits	no
+CD8+ Conv TCRab		ConT TCRab	Exact		CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	12					no CL hits	no
+CD4+/CD8+ Conv TCRab		ConT TCRab	Exact		CL:0000809	double-positive, alpha-beta thymocyte	8					no CL hits	no
+CD4-/CD8- Conv TCRab		ConT TCRab	Exact		CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell	9					no CL hits	no
+Tcm	Central memory alpha/beta and gamma/delta T cells	T cell	Exact		CL:0001057	myeloid dendritic cell, human	15					no CL hits	no
+CD4+ Tcm	CD4+ central memory alpha/beta and gamma/delta T cells	CD4+ T cell	Exact		CL:0001057	myeloid dendritic cell, human	15					no CL hits	no
+CD4+ TCRab Tcm	CD4+ central memory alpha/beta T cell	CD4+ TCRab T cell	Exact		CL:0001057	myeloid dendritic cell, human	15			CL:0000904	central memory CD4-positive, alpha-beta T cell		no
+CD4+ TCRgd Tcm	CD4+ central memory gamma/delta T cell	CD4+ TCRgd T cell			CL:0001057	myeloid dendritic cell, human	15					no CL hits	no
+CD8+ Tcm	CD8+ central memory T cell	CD8+ T cell	Exact		CL:0001057	myeloid dendritic cell, human	15			CL:0000907	central memory CD8-positive, alpha-beta T cell		no
+CD8+ TCRab Tcm	CD8+  central memory alpha/beta T cell	CD8+ TCRab T cell	Exact		CL:0001057	myeloid dendritic cell, human	15			CL:0000907	central memory CD8-positive, alpha-beta T cell		no
+CD8+ TCRgd Tcm	CD8+ central memory gamma/delta T cell	CD8+ TCRgd T cell			CL:0001057	myeloid dendritic cell, human	15					no CL hits	no
+Tnaive	Naive alpha/beta and gamma/delta T cell	T cell	Exact		CL:0001057	myeloid dendritic cell, human	15					no CL hits	no
+CD4+ Tnaive	CD4+ Naive alpha/beta and gamma/delta T cell	CD4+ T cell	Exact		CL:0001057	myeloid dendritic cell, human	15					no CL hits	no
+CD4+ TCRab Tnaive	CD4+ naive alpha/beta T cell	CD4 TCRab T cell	Exact		CL:0001057	myeloid dendritic cell, human	15			CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell		no
+CD4+ TCRgd Tnaive	CD4+ naive gamma/delta T cell	CD4+ TCRgd T cell			CL:0001057	myeloid dendritic cell, human	15					no CL hits	no
+CD8+ Tnaive	CD8+ naive alpha/beta and gamma/delta T cell	CD8+ T cell	Exact		CL:0001057	myeloid dendritic cell, human	15					no CL hits	no
+CD8+ TCRab Tnaive	CD8+ naive alpha/beta T cell	CD8+ TCRab T cell	Exact		CL:0001057	myeloid dendritic cell, human	15			CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell		no
+CD8+ TCRgd Tnaive	CD8+ naive gamma/delta  T cell	CD8+ TCRgd T cell			CL:0001057	myeloid dendritic cell, human	15					no CL hits	no
+Tem	Effector memory T cell	T cell	Exact		CL:0001057	myeloid dendritic cell, human	15			CL:0000905	effector memory CD4-positive, alpha-beta T cell		no
+CD4+ Tem	CD4+ effector memory alpha/beta and gamma/delta T cells	CD4+ T cell	Exact		CL:0001057	myeloid dendritic cell, human	15					no CL hits	no
+CD4+ TCRab Tem	CD4+ effector memory alpha/beta T cell	CD4+ TCRab T cell	Exact		CL:0001057	myeloid dendritic cell, human	15			CL:0000905	effector memory CD4-positive, alpha-beta T cell		no
+CD4+ TCRgd Tem	CD4+ effector memory gamma/delta T cell	CD4+ TCRgd T cell			CL:0001057	myeloid dendritic cell, human	15					no CL hits	no
+CD8+ Tem	CD8+ effector memory T cell	CD8+ T cell	Exact		CL:0001057	myeloid dendritic cell, human	15			CL:0000913	effector memory CD8-positive, alpha-beta T cell		no
+CD8+ TCRab Tem	CD8+  effector memory alpha/beta T cell	CD8+ TCRab T cell	Exact		CL:0001057	myeloid dendritic cell, human	15			CL:0000913	effector memory CD8-positive, alpha-beta T cell		no
+CD8+ TCRgd Tem	CD8+ effector memory gamma/delta T cell	CD8+ TCRgd T cell			CL:0001057	myeloid dendritic cell, human	15					no CL hits	no
+Temra	CD45RA+ effector memory alpha/beta and gamma/delta T cell	T cell	Exact		CL:0001057	myeloid dendritic cell, human	15					no CL hits	no
+CD4+ Temra	CD4+ CD45RA+ effector memory alpha/beta and gamma/delta T cell	CD4+ T cell	Exact		CL:0001057	myeloid dendritic cell, human	15					no CL hits	no
+CD4+ TCRab Temra	CD4+ CD45RA+ effector memory alpha/beta T cell	CD4 TCRab T cell	Exact		CL:0001057	myeloid dendritic cell, human	15			CL:4030002	effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated		no
+CD4+ TCRgd Temra	CD4+ CD45RA+ effector memory gamma/delta T cell	CD4+ TCRgd T cell			CL:0001057	myeloid dendritic cell, human	15					no CL hits	no
+CD8+ Temra	CD8+ CD45RA+ effector memory alpha/beta and gamma/delta T cell	CD8+ T cell	Exact		CL:0001057	myeloid dendritic cell, human	15					no CL hits	no
+CD8+ TCRab Temra	CD8+ CD45RA+ effector memory alpha/beta T cell	CD8+ TCRab T cell	Exact		CL:0001057	myeloid dendritic cell, human	15			CL:0000913	effector memory CD8-positive, alpha-beta T cell		no
+T helper		TCRab			CL:0002468	Gr1-low myeloid suppressor cell	6			CL:0000492	CD4-positive helper T cell		no
+T cytotoxic		TCRab			CL:0001057	myeloid dendritic cell, human	14			CL:0000794	CD8-positive, alpha-beta cytotoxic T cell		no
+ConT Treg-like		CD4 ConT			CL:0000896	activated CD4-positive, alpha-beta T cell	13			CL:0000815	regulatory T cell		no
+ConT Tfh-like		CD4 ConT			CL:0000896	activated CD4-positive, alpha-beta T cell	13			CL:0000492	CD4-positive helper T cell		no
+Th1-like		CD4 ConT			CL:0000896	activated CD4-positive, alpha-beta T cell	13			CL:0000492	CD4-positive helper T cell		no
+Th2-like		CD4 ConT			CL:0000896	activated CD4-positive, alpha-beta T cell	13			CL:0000546	T-helper 2 cell		no
+Th9-like					CL:0000546	T-helper 2 cell	12					no CL hits	no
+Th17-like		CD4 ConT			CL:0000896	activated CD4-positive, alpha-beta T cell	13			CL:0000492	CD4-positive helper T cell		no
+CD4 PanT helper		CD4/CD8 PanT			CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	13					no CL hits	no
+Th1-like			Surface Only		CL:0000545	T-helper 1 cell	16			CL:0000492	CD4-positive helper T cell		no
+Th2-like					CL:0000546	T-helper 2 cell	16			CL:0000546	T-helper 2 cell		yes
+Th9-like					CL:0000546	T-helper 2 cell	16					no CL hits	no
+Th17-like					CL:0000899	T-helper 17 cell	16			CL:0000492	CD4-positive helper T cell		no
+Tfh					CL:0001057	myeloid dendritic cell, human	14			CL:0000917	Tc1 cell		no
+CD4 PanT Treg		CD4/CD8 PanT			CL:0000896	activated CD4-positive, alpha-beta T cell	17					no CL hits	no
+Vg9 Vd2		TCRgd			CL:0002468	Gr1-low myeloid suppressor cell	6					no CL hits	no
+Vd2		TCRgd			CL:0002468	Gr1-low myeloid suppressor cell	6					no CL hits	no
+Vd3		TCRgd			CL:0002468	Gr1-low myeloid suppressor cell	6					no CL hits	no
+Vg9 Vd1					CL:0002468	Gr1-low myeloid suppressor cell	6					no CL hits	no
+Vd1		TCRgd			CL:0002468	Gr1-low myeloid suppressor cell	6					no CL hits	no
+Vg9		TCRgd			CL:0002468	Gr1-low myeloid suppressor cell	6					no CL hits	no
diff --git a/reports/candidate_cl_mappings_batch.tsv b/reports/candidate_cl_mappings_batch.tsv
new file mode 100644
index 0000000..c29653c
--- /dev/null
+++ b/reports/candidate_cl_mappings_batch.tsv
@@ -0,0 +1,380 @@
+abbreviation	full_name	parent	type_of_match	existing_cl_id	rank	cl_id	cl_label	score	hint_bonus	matched	contradictions	gaps	disqualified	note
+NK	Natural Killer Cell		Exact		1	CL:0002338	CD56-positive, CD161-positive immature natural killer cell, human	23	3	CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+		CD45+, CD127-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-, CD33-/CD64- (no axiom on any alt.)	no	
+NK	Natural Killer Cell		Exact		2	CL:0000938	CD16-negative, CD56-bright natural killer cell, human	19	3	CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (hi)		CD34-, CD45+, CD127-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-, CD33-/CD64- (no axiom on any alt.)	no	
+NK	Natural Killer Cell		Exact		3	CL:0000939	CD16-positive, CD56-dim natural killer cell, human	19	3	CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (dim)		CD34-, CD45+, CD127-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-, CD33-/CD64- (no axiom on any alt.)	no	
+NK2	Natural Killer Cell 2	NK	Surface Only (SO)		1	CL:0000938	CD16-negative, CD56-bright natural killer cell, human	23	3	CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (hi), CD16-		CD34-, CD45+, CD127-, CD57-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+NK2	Natural Killer Cell 2	NK	Surface Only (SO)		2	CL:0002338	CD56-positive, CD161-positive immature natural killer cell, human	23	3	CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+		CD45+, CD127-, CD16-, CD57-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+NK2	Natural Killer Cell 2	NK	Surface Only (SO)		3	CL:0002343	decidual natural killer cell, human	23	3	CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (hi), CD16-		CD34-, CD45+, CD127-, CD57-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+CTNK	Cytotoxice Natural Killer Cell	NK	SO and Cytokine		1	CL:0000939	CD16-positive, CD56-dim natural killer cell, human	23	3	CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (dim), CD16+		CD34-, CD45+, CD127-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+CTNK	Cytotoxice Natural Killer Cell	NK	SO and Cytokine		2	CL:0002338	CD56-positive, CD161-positive immature natural killer cell, human	23	3	CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+		CD45+, CD127-, CD16+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+CTNK	Cytotoxice Natural Killer Cell	NK	SO and Cytokine		3	CL:0001073	CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human	17	1	CD34-, CD3-, CD19-, CD56+		CD14-/CD33-/CD64- (no axiom on any alt.), CD45+, CD127-, CD16+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+NK1	Natural Killer Cell 1	CTNK	SO and TF		1	CL:0000939	CD16-positive, CD56-dim natural killer cell, human	23	3	CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (dim), CD16+		CD34-, CD45+, CD127-, CD57-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+NK1	Natural Killer Cell 1	CTNK	SO and TF		2	CL:0002338	CD56-positive, CD161-positive immature natural killer cell, human	23	3	CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+		CD45+, CD127-, CD16+, CD57-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+NK1	Natural Killer Cell 1	CTNK	SO and TF		3	CL:0001073	CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human	17	1	CD34-, CD3-, CD19-, CD56+		CD14-/CD33-/CD64- (no axiom on any alt.), CD45+, CD127-, CD16+, CD57-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+NK3	Natural Killer Cell 3	CTNK	TF ONLY		1	CL:0000939	CD16-positive, CD56-dim natural killer cell, human	23	3	CD14- (1 of 3 alt.), CD3-, CD19-, CD56+ (dim), CD16+		CD34-, CD45+, CD127-, CD57+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+NK3	Natural Killer Cell 3	CTNK	TF ONLY		2	CL:0002338	CD56-positive, CD161-positive immature natural killer cell, human	23	3	CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD56+		CD45+, CD127-, CD16+, CD57+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+NK3	Natural Killer Cell 3	CTNK	TF ONLY		3	CL:0001073	CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human	17	1	CD34-, CD3-, CD19-, CD56+		CD14-/CD33-/CD64- (no axiom on any alt.), CD45+, CD127-, CD16+, CD57+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+ILCp	Innate Lymphoid Cell Progenitor		Surface Only (SO)		1	CL:0001073	CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human	15	3	CD3-, CD56+, CD117+		CD45+, CD127+, CD294-	no	
+ILCp	Innate Lymphoid Cell Progenitor		Surface Only (SO)		2	CL:0001076	NKp46-positive innate lymphoid cell, human	15	3	CD3-, CD56+, CD117+		CD45+, CD127+, CD294-	no	
+ILCp	Innate Lymphoid Cell Progenitor		Surface Only (SO)		3	CL:0001074	CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human	14	2	CD3-, CD56+, CD117+		CD45+, CD127+, CD294-	no	
+ILC	Innate Lymphoid Cell		Surface Only (SO)		1	CL:0001057	myeloid dendritic cell, human	25	1	CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD3-, CD11C+ (hi), CD123-		CD45+, CD127+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.)	no	
+ILC	Innate Lymphoid Cell		Surface Only (SO)		2	CL:0000989	CD11c-low plasmacytoid dendritic cell	23	1	CD34-, CD3-, CD19-, CD45+, CD3-, CD11C+ (dim)		CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+ILC	Innate Lymphoid Cell		Surface Only (SO)		3	CL:0000992	immature CD11c-low plasmacytoid dendritic cell	23	1	CD34-, CD3-, CD19-, CD45+, CD3-, CD11C+ (dim)		CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+ILC1	Innate Lymphoid Cell 1	ILC	Surface Only (SO)		1	CL:0001057	myeloid dendritic cell, human	29	1	CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD3-, CD56-, CD11C+ (hi), CD123-		CD45+, CD127+, CD117-, CD294-, HLA-DR+, CD15-/CD66B- (no axiom on any alt.)	no	
+ILC1	Innate Lymphoid Cell 1	ILC	Surface Only (SO)		2	CL:0000989	CD11c-low plasmacytoid dendritic cell	27	1	CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C+ (dim)		CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117-, CD294-, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+ILC1	Innate Lymphoid Cell 1	ILC	Surface Only (SO)		3	CL:0000992	immature CD11c-low plasmacytoid dendritic cell	27	1	CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C+ (dim)		CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117-, CD294-, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+ILC2	Innate Lymphoid Cell 2	ILC	Surface Only (SO)		1	CL:0001057	myeloid dendritic cell, human	29	1	CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD3-, CD56-, CD11C+ (hi), CD123-		CD45+, CD127+, CD117-, CD294+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.)	no	
+ILC2	Innate Lymphoid Cell 2	ILC	Surface Only (SO)		2	CL:0000989	CD11c-low plasmacytoid dendritic cell	27	1	CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C+ (dim)		CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117-, CD294+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+ILC2	Innate Lymphoid Cell 2	ILC	Surface Only (SO)		3	CL:0000992	immature CD11c-low plasmacytoid dendritic cell	27	1	CD34-, CD3-, CD19-, CD45+, CD3-, CD56-, CD11C+ (dim)		CD14-/CD33-/CD64- (no axiom on any alt.), CD127+, CD117-, CD294+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+ILC3	Innate Lymphoid Cell 3	ILC	Surface Only (SO)		1	CL:0002338	CD56-positive, CD161-positive immature natural killer cell, human	29	1	CD14- (1 of 3 alt.), CD34-, CD3-, CD19-, CD3-, CD56+, CD117+		CD45+, CD127+, CD294-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+ILC3	Innate Lymphoid Cell 3	ILC	Surface Only (SO)		2	CL:0001073	CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human	27	3	CD34-, CD3-, CD19-, CD3-, CD56+, CD117+		CD14-/CD33-/CD64- (no axiom on any alt.), CD45+, CD127+, CD294-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+ILC3	Innate Lymphoid Cell 3	ILC	Surface Only (SO)		3	CL:0001072	CD34-negative, CD117-positive innate lymphoid cell, human	23	3	CD34-, CD3-, CD19-, CD3-, CD117+		CD14-/CD33-/CD64- (no axiom on any alt.), CD45+, CD127+, CD56+, CD294-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD123-	no	
+cDC	Conventional Dendritic Cell		Exact		1	CL:0002008	CD34-positive, CD38-positive eosinophil progenitor cell	23	1	CD123+ (1 of 2 alt.), CD123+ (1 of 2 alt.), CD14-, CD45+, CD3-, CD19-, CD56-		CD16-, CD33+/CD64+ (no axiom on any alt.), CD11C+, HLA-DR+, CD127-	no	
+cDC	Conventional Dendritic Cell		Exact		2	CL:0000614	basophilic myelocyte	22	0	CD123+ (hi) (1 of 2 alt.), CD123+ (hi) (1 of 2 alt.), CD16-, CD33+ (1 of 2 alt.), CD3-, CD19-, CD56-		CD14-, CD45+, CD11C+, HLA-DR+, CD127-	no	
+cDC	Conventional Dendritic Cell		Exact		3	CL:0000942	thymic plasmacytoid dendritic cell	20	2	CD123+ (1 of 2 alt.), CD123+ (1 of 2 alt.), CD45+, CD3-, CD19-, CD56-		CD14-, CD16-, CD33+/CD64+ (no axiom on any alt.), CD11C+, HLA-DR+, CD127-	no	
+cDC1	Conventional Dendritic Cell 1	DCM	Exact		1	CL:0002008	CD34-positive, CD38-positive eosinophil progenitor cell	23	1	CD123+ (1 of 2 alt.), CD123+ (1 of 2 alt.), CD14-, CD45+, CD3-, CD19-, CD56-		CD16-, CD33+/CD64+ (no axiom on any alt.), CD11C+, HLA-DR+, CD1C-, CD141+, CD127-, CD172A-, FCER1A-	no	
+cDC1	Conventional Dendritic Cell 1	DCM	Exact		2	CL:0000614	basophilic myelocyte	22	0	CD123+ (hi) (1 of 2 alt.), CD123+ (hi) (1 of 2 alt.), CD16-, CD33+ (1 of 2 alt.), CD3-, CD19-, CD56-		CD14-, CD45+, CD11C+, HLA-DR+, CD1C-, CD141+, CD127-, CD172A-, FCER1A-	no	
+cDC1	Conventional Dendritic Cell 1	DCM	Exact		3	CL:0000942	thymic plasmacytoid dendritic cell	20	2	CD123+ (1 of 2 alt.), CD123+ (1 of 2 alt.), CD45+, CD3-, CD19-, CD56-		CD14-, CD16-, CD33+/CD64+ (no axiom on any alt.), CD11C+, HLA-DR+, CD1C-, CD141+, CD127-, CD172A-, FCER1A-	no	
+cDC2	Conventional Dendritic Cell 2	DCM	Exact		1	CL:0002008	CD34-positive, CD38-positive eosinophil progenitor cell	23	1	CD123+ (1 of 2 alt.), CD123+ (1 of 2 alt.), CD14-, CD45+, CD3-, CD19-, CD56-		CD16-, CD33+/CD64+ (no axiom on any alt.), CD11C+, HLA-DR+, CD1C+, CD141-, CD127-, CD172A+, FCER1A+	no	
+cDC2	Conventional Dendritic Cell 2	DCM	Exact		2	CL:0000614	basophilic myelocyte	22	0	CD123+ (hi) (1 of 2 alt.), CD123+ (hi) (1 of 2 alt.), CD16-, CD33+ (1 of 2 alt.), CD3-, CD19-, CD56-		CD14-, CD45+, CD11C+, HLA-DR+, CD1C+, CD141-, CD127-, CD172A+, FCER1A+	no	
+cDC2	Conventional Dendritic Cell 2	DCM	Exact		3	CL:0000942	thymic plasmacytoid dendritic cell	20	2	CD123+ (1 of 2 alt.), CD123+ (1 of 2 alt.), CD45+, CD3-, CD19-, CD56-		CD14-, CD16-, CD33+/CD64+ (no axiom on any alt.), CD11C+, HLA-DR+, CD1C+, CD141-, CD127-, CD172A+, FCER1A+	no	
+pDC	Peripheral Dendritic Cell		Exact		1	CL:0000991	CD11c-negative plasmacytoid dendritic cell	22	2	CD3-, CD45+, CD123+ (1 of 2 alt.), CD303+ (1 of 3 alt.), CD56-, CD19-		CD127-, CD15-/CD66B- (no axiom on any alt.), CD14-, CD16-	no	
+pDC	Peripheral Dendritic Cell		Exact		2	CL:0000994	immature CD11c-negative plasmacytoid dendritic cell	22	2	CD3-, CD45+, CD123+ (1 of 2 alt.), CD303+ (1 of 3 alt.), CD56-, CD19-		CD127-, CD15-/CD66B- (no axiom on any alt.), CD14-, CD16-	no	
+pDC	Peripheral Dendritic Cell		Exact		3	CL:0000996	mature CD11c-negative plasmacytoid dendritic cell	22	2	CD3-, CD45+, CD123+ (1 of 2 alt.), CD303+ (1 of 3 alt.), CD56-, CD19-		CD127-, CD15-/CD66B- (no axiom on any alt.), CD14-, CD16-	no	
+Basophil	Basophil		Exact		1	CL:0000614	basophilic myelocyte	18	1	CD3-, CD33+ (1 of 2 alt.), CD193+ (hi) (1 of 4 alt.), CD56-, CD19-, CD16-	CD15-/CD66B- (all alt. conflict)	CD45+, CD127-, CD14-, FCER1A+, HLA-DR-	no	
+Basophil	Basophil		Exact		2	CL:0002008	CD34-positive, CD38-positive eosinophil progenitor cell	18	0	CD3-, CD45+, CD123+ (1 of 2 alt.), CD56-, CD19-, CD14-		CD193+/FCER1A+/HLA-DR-/CD303- (no axiom on any alt.), CD127-, CD15-/CD66B- (no axiom on any alt.), CD16-, FCER1A+, HLA-DR-	no	
+Basophil	Basophil		Exact		3	CL:0000043	mature basophil	17	1	CD3-, CD123+ (hi) (1 of 2 alt.), CD193+ (hi) (1 of 4 alt.), CD56-, CD19-		CD45+, CD127-, CD15-/CD66B- (no axiom on any alt.), CD14-, CD16-, FCER1A+, HLA-DR-	no	
+Basophil	Basophil		Exact		1	CL:0000043	mature basophil	17	1	CD3-, CD193+ (hi), CD123+ (hi), CD56-, CD19-		CD15-/CD66B- (no axiom on any alt.), CD45+, CD127-	no	
+Basophil	Basophil		Exact		2	CL:0000767	basophil	17	1	CD3-, CD193+ (hi), CD123+ (hi), CD56-, CD19-		CD15-/CD66B- (no axiom on any alt.), CD45+, CD127-	no	
+Basophil	Basophil		Exact		3	CL:0000768	immature basophil	17	1	CD3-, CD193+ (hi), CD123+ (hi), CD56-, CD19-		CD15-/CD66B- (no axiom on any alt.), CD45+, CD127-	no	
+Mono	Monocyte		Exact		1	CL:0000614	basophilic myelocyte	24	0	CD56-, CD19-, CD123+ (hi), CD123+ (hi) (1 of 2 alt.), CD15+, CD66B+, CD3-, CD33+ (1 of 2 alt.)		CD303-, CD45+, CD14+, CD11C+	no	
+Mono	Monocyte		Exact		2	CL:0000769	basophilic metamyelocyte	24	0	CD56-, CD19-, CD123+ (hi), CD123+ (hi) (1 of 2 alt.), CD15+, CD66B+, CD3-, CD33+ (1 of 2 alt.)		CD303-, CD45+, CD14+, CD11C+	no	
+Mono	Monocyte		Exact		3	CL:0000942	thymic plasmacytoid dendritic cell	22	0	CD56-, CD19-, CD123+, CD123+ (1 of 2 alt.), CD45+, CD3-		CD303-, CD14+, CD11C+, CD15+, CD66B+, CD64+/CD33+ (no axiom on any alt.)	no	
+CMo	Classical Monocyte	Mono	Exact		1	CL:0000614	basophilic myelocyte	28	0	CD56-, CD19-, CD123+ (hi), CD123+ (hi) (1 of 2 alt.), CD16-, CD15+, CD66B+, CD3-, CD33+ (1 of 2 alt.)		CD303-, CD45+, CD14+	no	
+CMo	Classical Monocyte	Mono	Exact		2	CL:0000942	thymic plasmacytoid dendritic cell	22	0	CD56-, CD19-, CD123+, CD123+ (1 of 2 alt.), CD45+, CD3-		CD303-, CD14+, CD16-, CD15+, CD66B+, CD64+/CD33+ (no axiom on any alt.)	no	
+CMo	Classical Monocyte	Mono	Exact		3	CL:0000043	mature basophil	20	0	CD56-, CD19-, CD123+ (hi), CD123+ (hi) (1 of 2 alt.), CD66B+, CD3-		CD303-, CD45+, CD14+, CD16-, CD15+, CD64+/CD33+ (no axiom on any alt.)	no	
+NCMo	Non-classical Monocyte	Mono	Exact		1	CL:0000769	basophilic metamyelocyte	28	0	CD56-, CD19-, CD123+ (hi), CD123+ (hi) (1 of 2 alt.), CD16+, CD15+, CD66B+, CD3-, CD33+ (1 of 2 alt.)		CD303-, CD45+, CD14-	no	
+NCMo	Non-classical Monocyte	Mono	Exact		2	CL:0002008	CD34-positive, CD38-positive eosinophil progenitor cell	26	0	CD56-, CD19-, CD123+, CD123+ (1 of 2 alt.), CD45+, CD14-, CD3-		CD303-, CD16+, CD15+, CD66B+, CD64+/CD33+ (no axiom on any alt.)	no	
+NCMo	Non-classical Monocyte	Mono	Exact		3	CL:0000557	granulocyte monocyte progenitor cell	24	2	CD56-, CD19-, CD123+, CD123+ (1 of 2 alt.), CD14-, CD3-		CD303-, CD45+, CD16+, CD15+, CD66B+, CD64+/CD33+ (no axiom on any alt.)	no	
+IntMo	Intermediate Monocyte	Mono	Exact		1	CL:0000769	basophilic metamyelocyte	28	0	CD56-, CD19-, CD123+ (hi), CD123+ (hi) (1 of 2 alt.), CD16+, CD15+, CD66B+, CD3-, CD33+ (1 of 2 alt.)		CD303-, CD45+, CD14+	no	
+IntMo	Intermediate Monocyte	Mono	Exact		2	CL:0000942	thymic plasmacytoid dendritic cell	22	0	CD56-, CD19-, CD123+, CD123+ (1 of 2 alt.), CD45+, CD3-		CD303-, CD14+, CD16+, CD15+, CD66B+, CD64+/CD33+ (no axiom on any alt.)	no	
+IntMo	Intermediate Monocyte	Mono	Exact		3	CL:0000043	mature basophil	20	0	CD56-, CD19-, CD123+ (hi), CD123+ (hi) (1 of 2 alt.), CD66B+, CD3-		CD303-, CD45+, CD14+, CD16+, CD15+, CD64+/CD33+ (no axiom on any alt.)	no	
+Neut	Neutrophil		Exact		1	CL:0000582	neutrophilic metamyelocyte	22	2	CD3-, CD56-, CD15+ (1 of 2 alt.), CD16+, CD19-, CD33+ (1 of 2 alt.)		CD14-, CD123-, CD45+, CD193-, HLA-DR+, CD11C+	no	
+Neut	Neutrophil		Exact		2	CL:0000096	mature neutrophil	20	2	CD3-, CD56-, CD15+ (1 of 2 alt.), CD16+, CD19-		CD14-, CD123-, CD45+, CD193-, HLA-DR+, CD11C+, CD64-/CD33+ (no axiom on any alt.)	no	
+Neut	Neutrophil		Exact		3	CL:0000560	band form neutrophil	20	2	CD3-, CD56-, CD15+ (1 of 2 alt.), CD16+, CD19-		CD14-, CD123-, CD45+, CD193-, HLA-DR+, CD11C+, CD64-/CD33+ (no axiom on any alt.)	no	
+Eos	Eosinophil		Exact		1	CL:0000612	eosinophilic myelocyte	26	2	CD3-, CD56-, CD15+ (1 of 2 alt.), CD193+, CD16-, CD19-, CD33+ (1 of 2 alt.)		CD14-, CD123-, CD45+, HLA-DR+, CD11C+	no	
+Eos	Eosinophil		Exact		2	CL:0000041	mature eosinophil	20	2	CD3-, CD56-, CD66B+ (1 of 2 alt.), CD193+, CD19-		CD14-, CD123-, CD45+, CD16-, HLA-DR+, CD11C+, CD64-/CD33+ (no axiom on any alt.)	no	
+Eos	Eosinophil		Exact		3	CL:0000580	neutrophilic myelocyte	20	0	CD3-, CD56-, CD15+ (1 of 2 alt.), CD16-, CD19-, CD33+ (1 of 2 alt.)		CD14-, CD123-, CD45+, CD193+, HLA-DR+, CD11C+	no	
+B cell	B cell		Exact		1	CL:0000819	B-1 B cell	15	1	CD3-, CD45+, CD20+ (1 of 2 alt.), CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+B cell	B cell		Exact		2	CL:0000820	B-1a B cell	15	1	CD3-, CD45+, CD20+ (1 of 2 alt.), CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+B cell	B cell		Exact		3	CL:0000821	B-1b B cell	15	1	CD3-, CD45+, CD20+ (1 of 2 alt.), CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+ASC	Antibody Secreting Cell		Surface Only (SO)		1	CL:0002115	B220-positive CD38-positive unswitched memory B cell	23	1	CD3-, CD45+, CD19+, CD27+, CD38+, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+ASC	Antibody Secreting Cell		Surface Only (SO)		2	CL:0002116	B220-low CD38-positive unswitched memory B cell	23	1	CD3-, CD45+ (dim), CD19+, CD27+, CD38+, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+ASC	Antibody Secreting Cell		Surface Only (SO)		3	CL:0002122	B220-positive CD38-positive IgG-negative class switched memory B cell	23	1	CD3-, CD45+, CD19+, CD27+, CD38+, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+PB	Plasmablast	ASC	Surface Only (SO)		1	CL:0002115	B220-positive CD38-positive unswitched memory B cell	26	0	CD3-, CD45+, CD19+, CD27+, CD38+, CD138-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+PB	Plasmablast	ASC	Surface Only (SO)		2	CL:0002116	B220-low CD38-positive unswitched memory B cell	26	0	CD3-, CD45+ (dim), CD19+, CD27+, CD38+, CD138-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+PB	Plasmablast	ASC	Surface Only (SO)		3	CL:0002122	B220-positive CD38-positive IgG-negative class switched memory B cell	26	0	CD3-, CD45+, CD19+, CD27+, CD38+, CD138-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+PC	Plasma Cell	ASC	Surface Only (SO)		1	CL:0000962	Bm2 B cell	16	1	CD3-, CD45+, CD19+, CD38+	CD20-	CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27+, CD138+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+PC	Plasma Cell	ASC	Surface Only (SO)		2	CL:0002047	fraction B precursor B cell	13	1	CD3-, CD45+, CD19+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27+, CD38+, CD138+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-, CD20-	no	
+PC	Plasma Cell	ASC	Surface Only (SO)		3	CL:0002048	late pro-B cell	13	1	CD3-, CD19+ (dim), CD38+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27+, CD138+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-, CD20-	no	
+Transitional	Transitional B cell		Exact											no qualified markers found
+T1/T2 B	Transitonal B cell 1 and 2				1	CL:0002109	B220-positive CD38-positive naive B cell	23	1	CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD38+ (1 of 2 alt.), CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD24+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+T1/T2 B	Transitonal B cell 1 and 2				2	CL:0002110	B220-low CD38-positive naive B cell	23	1	CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27-, CD38+ (1 of 2 alt.), CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD24+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+T1/T2 B	Transitonal B cell 1 and 2				3	CL:0002047	fraction B precursor B cell	21	1	CD3-, CD45+, CD19+ (1 of 2 alt.), CD10+ (1 of 2 alt.), CD24+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-, CD20+	no	
+Mature B	Mature B cell		Exact		1	CL:0000961	Bm1 B cell	19	1	CD3-, CD45+, CD20+ (1 of 2 alt.), CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+Mature B	Mature B cell		Exact		2	CL:0002102	CD38-negative naive B cell	19	1	CD3-, CD20+ (1 of 2 alt.), CD27-, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+Mature B	Mature B cell		Exact		3	CL:0002055	CD38-negative immature B cell	16	2	CD3-, CD20+ (1 of 2 alt.), CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+T3	Transitional B cell 3	Mature B	Exact		1	CL:0000961	Bm1 B cell	19	1	CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 2 alt.), CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD24+, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+T3	Transitional B cell 3	Mature B	Exact		2	CL:0002102	CD38-negative naive B cell	19	1	CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 2 alt.), CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24+, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+T3	Transitional B cell 3	Mature B	Exact		3	CL:0002109	B220-positive CD38-positive naive B cell	19	1	CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38-/CD10- (no axiom on any alt.), CD24+, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+Naive	Naive B cell	Mature B	Exact		1	CL:0002102	CD38-negative naive B cell	20	2	CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 2 alt.), CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24-, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+Naive	Naive B cell	Mature B	Exact		2	CL:0002109	B220-positive CD38-positive naive B cell	20	2	CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38-/CD10- (no axiom on any alt.), CD24-, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+Naive	Naive B cell	Mature B	Exact		3	CL:0002110	B220-low CD38-positive naive B cell	20	2	CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38-/CD10- (no axiom on any alt.), CD24-, IGD+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+BDN	Double Negative B cells	Mature B	Exact		1	CL:0002102	CD38-negative naive B cell	19	1	CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 2 alt.), CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24-, IGD-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+BDN	Double Negative B cells	Mature B	Exact		2	CL:0000961	Bm1 B cell	18	0	CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 2 alt.), CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD24-, IGD-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+BDN	Double Negative B cells	Mature B	Exact		3	CL:0002109	B220-positive CD38-positive naive B cell	18	0	CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38-/CD10- (no axiom on any alt.), CD24-, IGD-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+BDN1	Double Negative B cell 1	BDN	Exact		1	CL:0000961	Bm1 B cell	23	1	CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 2 alt.), CD21+, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD24+, IGD-, CD11C-, CD185+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+BDN1	Double Negative B cell 1	BDN	Exact		2	CL:0002055	CD38-negative immature B cell	20	2	CD3-, CD20+ (1 of 2 alt.), CD38- (1 of 2 alt.), CD21+ (dim), CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD24+, IGD-, CD11C-, CD185+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+BDN1	Double Negative B cell 1	BDN	Exact		3	CL:0002102	CD38-negative naive B cell	20	2	CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 2 alt.), CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24+, IGD-, CD21+, CD11C-, CD185+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+BDN2	Double Negative B cell 2	BDN	Exact		1	CL:0002102	CD38-negative naive B cell	20	2	CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 2 alt.), CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24-, IGD-, CD21-, CD11C+, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+BDN2	Double Negative B cell 2	BDN	Exact		2	CL:0002109	B220-positive CD38-positive naive B cell	19	1	CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38-/CD10- (no axiom on any alt.), CD24-, IGD-, CD21-, CD11C+, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+BDN2	Double Negative B cell 2	BDN	Exact		3	CL:0002110	B220-low CD38-positive naive B cell	19	1	CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38-/CD10- (no axiom on any alt.), CD24-, IGD-, CD21-, CD11C+, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+BDN3	Double Negative B cell 3	BDN	Exact		1	CL:0002102	CD38-negative naive B cell	20	2	CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 2 alt.), CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24+, IGD-, CD21-, CD11C-, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+BDN3	Double Negative B cell 3	BDN	Exact		2	CL:0000958	T1 B cell	19	1	CD3-, CD20+ (1 of 2 alt.), CD24+ (hi), CD21-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD38- (hi)/CD10- (no axiom on any alt.), IGD-, CD11C-, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+BDN3	Double Negative B cell 3	BDN	Exact		3	CL:0002109	B220-positive CD38-positive naive B cell	19	1	CD3-, CD45+, CD20+ (1 of 2 alt.), CD27-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD38-/CD10- (no axiom on any alt.), CD24+, IGD-, CD21-, CD11C-, CD185-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+BDN4	Double Negative B cell 4	BDN	Exact		1	CL:0000961	Bm1 B cell	23	1	CD3-, CD45+, CD20+ (1 of 2 alt.), CD38- (1 of 2 alt.), CD21+, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD27-, CD24+, IGD-, CD11C-, CD185+, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+BDN4	Double Negative B cell 4	BDN	Exact		2	CL:0002055	CD38-negative immature B cell	20	2	CD3-, CD20+ (1 of 2 alt.), CD38- (1 of 2 alt.), CD21+ (dim), CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD27-, CD24+, IGD-, CD11C-, CD185+, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+BDN4	Double Negative B cell 4	BDN	Exact		3	CL:0002102	CD38-negative naive B cell	20	2	CD3-, CD20+ (1 of 2 alt.), CD27-, CD38- (1 of 2 alt.), CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD24+, IGD-, CD21+, CD11C-, CD185+, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+Bmem	Memory B cell		Exact		1	CL:0002112	B220-positive CD38-negative unswitched memory B cell	24	2	CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+Bmem	Memory B cell		Exact		2	CL:0002113	B220-low CD38-negative unswitched memory B cell	24	2	CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+Bmem	Memory B cell		Exact		3	CL:0002108	CD38-negative IgG memory B cell	20	2	CD3-, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+IgD only	IgD only Memory B cell	Bmem	Exact		1	CL:0002112	B220-positive CD38-negative unswitched memory B cell	24	2	CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD+, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+IgD only	IgD only Memory B cell	Bmem	Exact		2	CL:0002113	B220-low CD38-negative unswitched memory B cell	24	2	CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD+, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+IgD only	IgD only Memory B cell	Bmem	Exact		3	CL:0002108	CD38-negative IgG memory B cell	20	2	CD3-, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD+, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+Unswitched	Unswitched Memory B cell	Bmem	Exact		1	CL:0002112	B220-positive CD38-negative unswitched memory B cell	25	3	CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD+, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+Unswitched	Unswitched Memory B cell	Bmem	Exact		2	CL:0002113	B220-low CD38-negative unswitched memory B cell	25	3	CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD+, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+Unswitched	Unswitched Memory B cell	Bmem	Exact		3	CL:0002111	CD38-negative unswitched memory B cell	21	3	CD3-, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD+, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+IgM only	IgM-only Memory B cell	Bmem	Exact		1	CL:0002112	B220-positive CD38-negative unswitched memory B cell	24	2	CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+IgM only	IgM-only Memory B cell	Bmem	Exact		2	CL:0002113	B220-low CD38-negative unswitched memory B cell	24	2	CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+IgM only	IgM-only Memory B cell	Bmem	Exact		3	CL:0002108	CD38-negative IgG memory B cell	20	2	CD3-, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+Switched	Switched Memory B cell	Bmem	Exact		1	CL:0002112	B220-positive CD38-negative unswitched memory B cell	25	3	CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+Switched	Switched Memory B cell	Bmem	Exact		2	CL:0002113	B220-low CD38-negative unswitched memory B cell	25	3	CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+Switched	Switched Memory B cell	Bmem	Exact		3	CL:0002111	CD38-negative unswitched memory B cell	21	3	CD3-, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+IgA	IgA-Class Switched B cell	Switched	Surface Only (SO)		1	CL:0002112	B220-positive CD38-negative unswitched memory B cell	24	2	CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA+, IGG-, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+IgA	IgA-Class Switched B cell	Switched	Surface Only (SO)		2	CL:0002113	B220-low CD38-negative unswitched memory B cell	24	2	CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA+, IGG-, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+IgA	IgA-Class Switched B cell	Switched	Surface Only (SO)		3	CL:0002118	CD38-negative IgG-negative class switched memory B cell	21	3	CD3-, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM-, IGA+, IGG-, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+IgG	IgG-Class Switched B cell	Switched	Surface Only (SO)		1	CL:0002112	B220-positive CD38-negative unswitched memory B cell	24	2	CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA-, IGG+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+IgG	IgG-Class Switched B cell	Switched	Surface Only (SO)		2	CL:0002113	B220-low CD38-negative unswitched memory B cell	24	2	CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA-, IGG+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+IgG	IgG-Class Switched B cell	Switched	Surface Only (SO)		3	CL:0002118	CD38-negative IgG-negative class switched memory B cell	22	4	CD3-, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM-, IGA-, IGG+, IGE-, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+IgE	IgE-Class Switched B cell	Switched	Surface Only (SO)		1	CL:0002112	B220-positive CD38-negative unswitched memory B cell	24	2	CD3-, CD45+, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA-, IGG-, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+IgE	IgE-Class Switched B cell	Switched	Surface Only (SO)		2	CL:0002113	B220-low CD38-negative unswitched memory B cell	24	2	CD3-, CD45+ (dim), CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, IGD-, IGM-, IGA-, IGG-, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+IgE	IgE-Class Switched B cell	Switched	Surface Only (SO)		3	CL:0002118	CD38-negative IgG-negative class switched memory B cell	21	3	CD3-, CD20+ (1 of 2 alt.), CD27+, CD38-, CD20+		CD14-/CD33-/CD64- (no axiom on any alt.), CD56-, CD45+, IGD-, IGM-, IGA-, IGG-, IGE+, CD127-, CD16-, CD15-/CD66B- (no axiom on any alt.), HLA-DR+, CD11C+, CD123-	no	
+T cell	T lymphocyte		Exact		1	CL:0002468	Gr1-low myeloid suppressor cell	7	1	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+T cell	T lymphocyte		Exact		2	CL:0002477	adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+T cell	T lymphocyte		Exact		3	CL:0002478	F4/80-negative adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ T cell	CD56+ T cell	T cell	Exact		1	CL:0002468	Gr1-low myeloid suppressor cell	7	1	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ T cell	CD56+ T cell	T cell	Exact		2	CL:0002477	adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ T cell	CD56+ T cell	T cell	Exact		3	CL:0002478	F4/80-negative adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4 T cell	CD56+ CD4 T cell	CD4+ T cell	Exact		1	CL:0002039	immature NK T cell stage I, mouse	9	1	CD4+ (dim), CD8+ (dim)		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4 T cell	CD56+ CD4 T cell	CD4+ T cell	Exact		2	CL:0002430	CD4-intermediate, CD8-positive double-positive thymocyte	9	1	CD4+ (dim), CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4 T cell	CD56+ CD4 T cell	CD4+ T cell	Exact		3	CL:0002431	CD4-positive, CD8-intermediate double-positive thymocyte	9	1	CD4+, CD8+ (dim)		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD8 T cell	CD56+ CD8 T cell	CD8+ T cell	Exact		1	CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	14	2	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD8 T cell	CD56+ CD8 T cell	CD8+ T cell	Exact		2	CL:0000907	central memory CD8-positive, alpha-beta T cell	14	2	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD8 T cell	CD56+ CD8 T cell	CD8+ T cell	Exact		3	CL:0000913	effector memory CD8-positive, alpha-beta T cell	14	2	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ TCRab	CD56+ alpha/beta T cell	TCRab	Exact		1	CL:0002468	Gr1-low myeloid suppressor cell	7	1	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ TCRab	CD56+ alpha/beta T cell	TCRab	Exact		2	CL:0002477	adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ TCRab	CD56+ alpha/beta T cell	TCRab	Exact		3	CL:0002478	F4/80-negative adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4+ TCRab	CD56+ CD4+ alpha/beta T cell	CD4+ TCRab T cell	Exact		1	CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4+ TCRab	CD56+ CD4+ alpha/beta T cell	CD4+ TCRab T cell	Exact		2	CL:0000904	central memory CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4+ TCRab	CD56+ CD4+ alpha/beta T cell	CD4+ TCRab T cell	Exact		3	CL:0000905	effector memory CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD8+ TCRab	CD56+ CD8+ alpha/beta T cell	CD8+ TCRab T cell	Exact		1	CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	13	1	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD8+ TCRab	CD56+ CD8+ alpha/beta T cell	CD8+ TCRab T cell	Exact		2	CL:0000907	central memory CD8-positive, alpha-beta T cell	13	1	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD8+ TCRab	CD56+ CD8+ alpha/beta T cell	CD8+ TCRab T cell	Exact		3	CL:0000913	effector memory CD8-positive, alpha-beta T cell	13	1	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4+/CD8+ TCRab	CD56+ CD4+/CD8+ alpha/beta T cell	CD4+/CD8+ TCRab T cell	Exact		1	CL:0002039	immature NK T cell stage I, mouse	9	1	CD4+ (dim), CD8+ (dim)		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4+/CD8+ TCRab	CD56+ CD4+/CD8+ alpha/beta T cell	CD4+/CD8+ TCRab T cell	Exact		2	CL:0000809	double-positive, alpha-beta thymocyte	8	0	CD4+, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4+/CD8+ TCRab	CD56+ CD4+/CD8+ alpha/beta T cell	CD4+/CD8+ TCRab T cell	Exact		3	CL:0002427	resting double-positive thymocyte	8	0	CD4+, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4-/CD8- TCRab	CD56+ CD4-/CD8- alpha/beta T cell	CD4-/CD8- TCRab T cell	Exact		1	CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell	10	2	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4-/CD8- TCRab	CD56+ CD4-/CD8- alpha/beta T cell	CD4-/CD8- TCRab T cell	Exact		2	CL:0000924	CD4-negative, CD8-negative type I NK T cell	10	2	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4-/CD8- TCRab	CD56+ CD4-/CD8- alpha/beta T cell	CD4-/CD8- TCRab T cell	Exact		3	CL:0000928	activated CD4-negative, CD8-negative type I NK T cell	10	2	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ TCRgd	CD56+ gamma/delta T cell	TCRgd	Exact		1	CL:0002468	Gr1-low myeloid suppressor cell	7	1	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ TCRgd	CD56+ gamma/delta T cell	TCRgd	Exact		2	CL:0002477	adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ TCRgd	CD56+ gamma/delta T cell	TCRgd	Exact		3	CL:0002478	F4/80-negative adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4+ TCRgd	CD56+ CD4+ gamma/delta T cell	CD4+ TCRgd T cell	Exact		1	CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4+ TCRgd	CD56+ CD4+ gamma/delta T cell	CD4+ TCRgd T cell	Exact		2	CL:0000904	central memory CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4+ TCRgd	CD56+ CD4+ gamma/delta T cell	CD4+ TCRgd T cell	Exact		3	CL:0000905	effector memory CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD8+ TCRgd	CD56+ CD8+ gamma/delta T cell	CD8+ TCRgd T cell	Exact		1	CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	13	1	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD8+ TCRgd	CD56+ CD8+ gamma/delta T cell	CD8+ TCRgd T cell	Exact		2	CL:0000907	central memory CD8-positive, alpha-beta T cell	13	1	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD8+ TCRgd	CD56+ CD8+ gamma/delta T cell	CD8+ TCRgd T cell	Exact		3	CL:0000913	effector memory CD8-positive, alpha-beta T cell	13	1	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4+/CD8+ TCRgd	CD56+ CD4+/CD8+ gamma/delta T cell	CD4+/CD8+ TCRgd	Exact		1	CL:0002039	immature NK T cell stage I, mouse	9	1	CD4+ (dim), CD8+ (dim)		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4+/CD8+ TCRgd	CD56+ CD4+/CD8+ gamma/delta T cell	CD4+/CD8+ TCRgd	Exact		2	CL:0000809	double-positive, alpha-beta thymocyte	8	0	CD4+, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD4+/CD8+ TCRgd	CD56+ CD4+/CD8+ gamma/delta T cell	CD4+/CD8+ TCRgd	Exact		3	CL:0002427	resting double-positive thymocyte	8	0	CD4+, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD8-/CD8- TCRgd	CD56+ CD8-/CD8- gamma/delta T cell	CD4-/CD8- TCRgd	Exact		1	CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell	11	3	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD8-/CD8- TCRgd	CD56+ CD8-/CD8- gamma/delta T cell	CD4-/CD8- TCRgd	Exact		2	CL:0000924	CD4-negative, CD8-negative type I NK T cell	11	3	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD56+ CD8-/CD8- TCRgd	CD56+ CD8-/CD8- gamma/delta T cell	CD4-/CD8- TCRgd	Exact		3	CL:0000928	activated CD4-negative, CD8-negative type I NK T cell	11	3	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), CD56+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+iNKT	Invariant Natural Killer T cell	T cell	Exact		1	CL:0002468	Gr1-low myeloid suppressor cell	7	1	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+iNKT	Invariant Natural Killer T cell	T cell	Exact		2	CL:0002477	adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+iNKT	Invariant Natural Killer T cell	T cell	Exact		3	CL:0002478	F4/80-negative adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+TCRab	alpha/beta T cell	T cell	Exact		1	CL:0002468	Gr1-low myeloid suppressor cell	7	1	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+TCRab	alpha/beta T cell	T cell	Exact		2	CL:0002477	adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+TCRab	alpha/beta T cell	T cell	Exact		3	CL:0002478	F4/80-negative adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+TCRgd	gamma/delta T cell	T cell	Exact		1	CL:0002468	Gr1-low myeloid suppressor cell	7	1	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+TCRgd	gamma/delta T cell	T cell	Exact		2	CL:0002477	adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+TCRgd	gamma/delta T cell	T cell	Exact		3	CL:0002478	F4/80-negative adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ T cell	alpha/beta and gamma/delta CD4+ T cells	T cell	Exact		1	CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ T cell	alpha/beta and gamma/delta CD4+ T cells	T cell	Exact		2	CL:0000904	central memory CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ T cell	alpha/beta and gamma/delta CD4+ T cells	T cell	Exact		3	CL:0000905	effector memory CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ T cell	alpha/beta and gamma/delta CD8+ T cells	T cell	Exact		1	CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	13	1	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ T cell	alpha/beta and gamma/delta CD8+ T cells	T cell	Exact		2	CL:0000907	central memory CD8-positive, alpha-beta T cell	13	1	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ T cell	alpha/beta and gamma/delta CD8+ T cells	T cell	Exact		3	CL:0000913	effector memory CD8-positive, alpha-beta T cell	13	1	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+/CD8+ T cell	alpha/beta and gamma/delta CD4+ and CD8+ T cells	T cell	Exact		1	CL:0002039	immature NK T cell stage I, mouse	9	1	CD4+ (dim), CD8+ (dim)		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+/CD8+ T cell	alpha/beta and gamma/delta CD4+ and CD8+ T cells	T cell	Exact		2	CL:0000809	double-positive, alpha-beta thymocyte	8	0	CD4+, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+/CD8+ T cell	alpha/beta and gamma/delta CD4+ and CD8+ T cells	T cell	Exact		3	CL:0002427	resting double-positive thymocyte	8	0	CD4+, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4-/CD8- T cell	alpha/beta and gamma/delta CD4- and CD8- T cells	T cell	Exact		1	CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell	11	3	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4-/CD8- T cell	alpha/beta and gamma/delta CD4- and CD8- T cells	T cell	Exact		2	CL:0000924	CD4-negative, CD8-negative type I NK T cell	11	3	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4-/CD8- T cell	alpha/beta and gamma/delta CD4- and CD8- T cells	T cell	Exact		3	CL:0000928	activated CD4-negative, CD8-negative type I NK T cell	11	3	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRab T cell	CD4+ alpha/beta T cell	TCRab	Exact		1	CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRab T cell	CD4+ alpha/beta T cell	TCRab	Exact		2	CL:0000904	central memory CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRab T cell	CD4+ alpha/beta T cell	TCRab	Exact		3	CL:0000905	effector memory CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRab T cell	CD8+ alpha/beta T cell	TCRab	Exact		1	CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	13	1	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRab T cell	CD8+ alpha/beta T cell	TCRab	Exact		2	CL:0000907	central memory CD8-positive, alpha-beta T cell	13	1	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRab T cell	CD8+ alpha/beta T cell	TCRab	Exact		3	CL:0000913	effector memory CD8-positive, alpha-beta T cell	13	1	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+/CD8+ TCRab T cell	CD4+ and CD8+ alpha/beta T cell	TCRab	Exact		1	CL:0002039	immature NK T cell stage I, mouse	9	1	CD4+ (dim), CD8+ (dim)		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+/CD8+ TCRab T cell	CD4+ and CD8+ alpha/beta T cell	TCRab	Exact		2	CL:0000809	double-positive, alpha-beta thymocyte	8	0	CD4+, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+/CD8+ TCRab T cell	CD4+ and CD8+ alpha/beta T cell	TCRab	Exact		3	CL:0002427	resting double-positive thymocyte	8	0	CD4+, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4-/CD8- TCRab T cell	CD4- and CD8- alpha/beta T cell	TCRab	Exact		1	CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell	11	3	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4-/CD8- TCRab T cell	CD4- and CD8- alpha/beta T cell	TCRab	Exact		2	CL:0000924	CD4-negative, CD8-negative type I NK T cell	11	3	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4-/CD8- TCRab T cell	CD4- and CD8- alpha/beta T cell	TCRab	Exact		3	CL:0000928	activated CD4-negative, CD8-negative type I NK T cell	11	3	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRgd T cell	CD4+ gamma/delta T cell	TCRgd	Exact		1	CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRgd T cell	CD4+ gamma/delta T cell	TCRgd	Exact		2	CL:0000904	central memory CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRgd T cell	CD4+ gamma/delta T cell	TCRgd	Exact		3	CL:0000905	effector memory CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRgd T cell	CD8+ gamma/delta T cell	TCRgd	Exact		1	CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	13	1	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRgd T cell	CD8+ gamma/delta T cell	TCRgd	Exact		2	CL:0000907	central memory CD8-positive, alpha-beta T cell	13	1	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRgd T cell	CD8+ gamma/delta T cell	TCRgd	Exact		3	CL:0000913	effector memory CD8-positive, alpha-beta T cell	13	1	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+/CD8+ TCRgd	CD4+/CD8+ gamma/delta T cell	TCRgd	Exact		1	CL:0002039	immature NK T cell stage I, mouse	9	1	CD4+ (dim), CD8+ (dim)		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+/CD8+ TCRgd	CD4+/CD8+ gamma/delta T cell	TCRgd	Exact		2	CL:0000809	double-positive, alpha-beta thymocyte	8	0	CD4+, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+/CD8+ TCRgd	CD4+/CD8+ gamma/delta T cell	TCRgd	Exact		3	CL:0002427	resting double-positive thymocyte	8	0	CD4+, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4-/CD8- TCRgd	CD4-/CD8- gamma/delta T cell	TCRgd	Exact		1	CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell	10	2	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4-/CD8- TCRgd	CD4-/CD8- gamma/delta T cell	TCRgd	Exact		2	CL:0000924	CD4-negative, CD8-negative type I NK T cell	10	2	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4-/CD8- TCRgd	CD4-/CD8- gamma/delta T cell	TCRgd	Exact		3	CL:0000928	activated CD4-negative, CD8-negative type I NK T cell	10	2	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+MAIT	Mucosal-associated Invariant T cell	T Lymph	Exact		1	CL:0002468	Gr1-low myeloid suppressor cell	7	1	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+MAIT	Mucosal-associated Invariant T cell	T Lymph	Exact		2	CL:0000485	mucosal type mast cell	6	2	CD123-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+MAIT	Mucosal-associated Invariant T cell	T Lymph	Exact		3	CL:0002477	adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Conv TCRab		T Lymph	Exact		1	CL:0002468	Gr1-low myeloid suppressor cell	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Conv TCRab		T Lymph	Exact		2	CL:0002477	adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Conv TCRab		T Lymph	Exact		3	CL:0002478	F4/80-negative adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ Conv TCRab		ConT TCRab	Exact		1	CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	12	0	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ Conv TCRab		ConT TCRab	Exact		2	CL:0000904	central memory CD4-positive, alpha-beta T cell	12	0	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ Conv TCRab		ConT TCRab	Exact		3	CL:0000905	effector memory CD4-positive, alpha-beta T cell	12	0	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ Conv TCRab		ConT TCRab	Exact		1	CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	12	0	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ Conv TCRab		ConT TCRab	Exact		2	CL:0000907	central memory CD8-positive, alpha-beta T cell	12	0	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ Conv TCRab		ConT TCRab	Exact		3	CL:0000913	effector memory CD8-positive, alpha-beta T cell	12	0	CD45+, CD4-, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+/CD8+ Conv TCRab		ConT TCRab	Exact		1	CL:0000809	double-positive, alpha-beta thymocyte	8	0	CD4+, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+/CD8+ Conv TCRab		ConT TCRab	Exact		2	CL:0002039	immature NK T cell stage I, mouse	8	0	CD4+ (dim), CD8+ (dim)		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+/CD8+ Conv TCRab		ConT TCRab	Exact		3	CL:0002427	resting double-positive thymocyte	8	0	CD4+, CD8+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4-/CD8- Conv TCRab		ConT TCRab	Exact		1	CL:0000803	CD4-negative CD8-negative gamma-delta intraepithelial T cell	9	1	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4-/CD8- Conv TCRab		ConT TCRab	Exact		2	CL:0000924	CD4-negative, CD8-negative type I NK T cell	9	1	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4-/CD8- Conv TCRab		ConT TCRab	Exact		3	CL:0000928	activated CD4-negative, CD8-negative type I NK T cell	9	1	CD4-, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), VB11+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Tcm	Central memory alpha/beta and gamma/delta T cells	T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Tcm	Central memory alpha/beta and gamma/delta T cells	T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Tcm	Central memory alpha/beta and gamma/delta T cells	T cell	Exact		3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ Tcm	CD4+ central memory alpha/beta and gamma/delta T cells	CD4+ T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ Tcm	CD4+ central memory alpha/beta and gamma/delta T cells	CD4+ T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ Tcm	CD4+ central memory alpha/beta and gamma/delta T cells	CD4+ T cell	Exact		3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRab Tcm	CD4+ central memory alpha/beta T cell	CD4+ TCRab T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRab Tcm	CD4+ central memory alpha/beta T cell	CD4+ TCRab T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRab Tcm	CD4+ central memory alpha/beta T cell	CD4+ TCRab T cell	Exact		3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRgd Tcm	CD4+ central memory gamma/delta T cell	CD4+ TCRgd T cell			1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRgd Tcm	CD4+ central memory gamma/delta T cell	CD4+ TCRgd T cell			2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRgd Tcm	CD4+ central memory gamma/delta T cell	CD4+ TCRgd T cell			3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ Tcm	CD8+ central memory T cell	CD8+ T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ Tcm	CD8+ central memory T cell	CD8+ T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ Tcm	CD8+ central memory T cell	CD8+ T cell	Exact		3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRab Tcm	CD8+  central memory alpha/beta T cell	CD8+ TCRab T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRab Tcm	CD8+  central memory alpha/beta T cell	CD8+ TCRab T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRab Tcm	CD8+  central memory alpha/beta T cell	CD8+ TCRab T cell	Exact		3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRgd Tcm	CD8+ central memory gamma/delta T cell	CD8+ TCRgd T cell			1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRgd Tcm	CD8+ central memory gamma/delta T cell	CD8+ TCRgd T cell			2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRgd Tcm	CD8+ central memory gamma/delta T cell	CD8+ TCRgd T cell			3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Tnaive	Naive alpha/beta and gamma/delta T cell	T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Tnaive	Naive alpha/beta and gamma/delta T cell	T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Tnaive	Naive alpha/beta and gamma/delta T cell	T cell	Exact		3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ Tnaive	CD4+ Naive alpha/beta and gamma/delta T cell	CD4+ T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ Tnaive	CD4+ Naive alpha/beta and gamma/delta T cell	CD4+ T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ Tnaive	CD4+ Naive alpha/beta and gamma/delta T cell	CD4+ T cell	Exact		3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRab Tnaive	CD4+ naive alpha/beta T cell	CD4 TCRab T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRab Tnaive	CD4+ naive alpha/beta T cell	CD4 TCRab T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRab Tnaive	CD4+ naive alpha/beta T cell	CD4 TCRab T cell	Exact		3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRgd Tnaive	CD4+ naive gamma/delta T cell	CD4+ TCRgd T cell			1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRgd Tnaive	CD4+ naive gamma/delta T cell	CD4+ TCRgd T cell			2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRgd Tnaive	CD4+ naive gamma/delta T cell	CD4+ TCRgd T cell			3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ Tnaive	CD8+ naive alpha/beta and gamma/delta T cell	CD8+ T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ Tnaive	CD8+ naive alpha/beta and gamma/delta T cell	CD8+ T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ Tnaive	CD8+ naive alpha/beta and gamma/delta T cell	CD8+ T cell	Exact		3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRab Tnaive	CD8+ naive alpha/beta T cell	CD8+ TCRab T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRab Tnaive	CD8+ naive alpha/beta T cell	CD8+ TCRab T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRab Tnaive	CD8+ naive alpha/beta T cell	CD8+ TCRab T cell	Exact		3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRgd Tnaive	CD8+ naive gamma/delta  T cell	CD8+ TCRgd T cell			1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRgd Tnaive	CD8+ naive gamma/delta  T cell	CD8+ TCRgd T cell			2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRgd Tnaive	CD8+ naive gamma/delta  T cell	CD8+ TCRgd T cell			3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Tem	Effector memory T cell	T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Tem	Effector memory T cell	T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Tem	Effector memory T cell	T cell	Exact		3	CL:0001024	CD34-positive, CD38-negative hematopoietic stem cell	12	2	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16-		CD123-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.)	no	
+CD4+ Tem	CD4+ effector memory alpha/beta and gamma/delta T cells	CD4+ T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ Tem	CD4+ effector memory alpha/beta and gamma/delta T cells	CD4+ T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ Tem	CD4+ effector memory alpha/beta and gamma/delta T cells	CD4+ T cell	Exact		3	CL:0001024	CD34-positive, CD38-negative hematopoietic stem cell	12	2	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16-		CD123-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.)	no	
+CD4+ TCRab Tem	CD4+ effector memory alpha/beta T cell	CD4+ TCRab T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRab Tem	CD4+ effector memory alpha/beta T cell	CD4+ TCRab T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRab Tem	CD4+ effector memory alpha/beta T cell	CD4+ TCRab T cell	Exact		3	CL:0001024	CD34-positive, CD38-negative hematopoietic stem cell	12	2	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16-		CD123-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.)	no	
+CD4+ TCRgd Tem	CD4+ effector memory gamma/delta T cell	CD4+ TCRgd T cell			1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRgd Tem	CD4+ effector memory gamma/delta T cell	CD4+ TCRgd T cell			2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRgd Tem	CD4+ effector memory gamma/delta T cell	CD4+ TCRgd T cell			3	CL:0001024	CD34-positive, CD38-negative hematopoietic stem cell	12	2	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16-		CD123-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.)	no	
+CD8+ Tem	CD8+ effector memory T cell	CD8+ T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ Tem	CD8+ effector memory T cell	CD8+ T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ Tem	CD8+ effector memory T cell	CD8+ T cell	Exact		3	CL:0001024	CD34-positive, CD38-negative hematopoietic stem cell	12	2	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16-		CD123-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.)	no	
+CD8+ TCRab Tem	CD8+  effector memory alpha/beta T cell	CD8+ TCRab T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRab Tem	CD8+  effector memory alpha/beta T cell	CD8+ TCRab T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRab Tem	CD8+  effector memory alpha/beta T cell	CD8+ TCRab T cell	Exact		3	CL:0001024	CD34-positive, CD38-negative hematopoietic stem cell	12	2	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16-		CD123-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.)	no	
+CD8+ TCRgd Tem	CD8+ effector memory gamma/delta T cell	CD8+ TCRgd T cell			1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRgd Tem	CD8+ effector memory gamma/delta T cell	CD8+ TCRgd T cell			2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRgd Tem	CD8+ effector memory gamma/delta T cell	CD8+ TCRgd T cell			3	CL:0001024	CD34-positive, CD38-negative hematopoietic stem cell	12	2	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD16-		CD123-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.)	no	
+Temra	CD45RA+ effector memory alpha/beta and gamma/delta T cell	T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Temra	CD45RA+ effector memory alpha/beta and gamma/delta T cell	T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Temra	CD45RA+ effector memory alpha/beta and gamma/delta T cell	T cell	Exact		3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ Temra	CD4+ CD45RA+ effector memory alpha/beta and gamma/delta T cell	CD4+ T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ Temra	CD4+ CD45RA+ effector memory alpha/beta and gamma/delta T cell	CD4+ T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ Temra	CD4+ CD45RA+ effector memory alpha/beta and gamma/delta T cell	CD4+ T cell	Exact		3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRab Temra	CD4+ CD45RA+ effector memory alpha/beta T cell	CD4 TCRab T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRab Temra	CD4+ CD45RA+ effector memory alpha/beta T cell	CD4 TCRab T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRab Temra	CD4+ CD45RA+ effector memory alpha/beta T cell	CD4 TCRab T cell	Exact		3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRgd Temra	CD4+ CD45RA+ effector memory gamma/delta T cell	CD4+ TCRgd T cell			1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRgd Temra	CD4+ CD45RA+ effector memory gamma/delta T cell	CD4+ TCRgd T cell			2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4+ TCRgd Temra	CD4+ CD45RA+ effector memory gamma/delta T cell	CD4+ TCRgd T cell			3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ Temra	CD8+ CD45RA+ effector memory alpha/beta and gamma/delta T cell	CD8+ T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ Temra	CD8+ CD45RA+ effector memory alpha/beta and gamma/delta T cell	CD8+ T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ Temra	CD8+ CD45RA+ effector memory alpha/beta and gamma/delta T cell	CD8+ T cell	Exact		3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRab Temra	CD8+ CD45RA+ effector memory alpha/beta T cell	CD8+ TCRab T cell	Exact		1	CL:0001057	myeloid dendritic cell, human	15	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRab Temra	CD8+ CD45RA+ effector memory alpha/beta T cell	CD8+ TCRab T cell	Exact		2	CL:0002000	Kit-positive erythroid progenitor cell	13	1	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD8+ TCRab Temra	CD8+ CD45RA+ effector memory alpha/beta T cell	CD8+ TCRab T cell	Exact		3	CL:0000782	myeloid dendritic cell	11	1	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+T helper		TCRab			1	CL:0002468	Gr1-low myeloid suppressor cell	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+T helper		TCRab			2	CL:0002477	adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+T helper		TCRab			3	CL:0002478	F4/80-negative adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+T cytotoxic		TCRab			1	CL:0001057	myeloid dendritic cell, human	14	0	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+T cytotoxic		TCRab			2	CL:0002000	Kit-positive erythroid progenitor cell	12	0	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+T cytotoxic		TCRab			3	CL:0000782	myeloid dendritic cell	10	0	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+ConT Treg-like		CD4 ConT			1	CL:0000896	activated CD4-positive, alpha-beta T cell	13	1	CD4+, CD25+, CD127-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+ConT Treg-like		CD4 ConT			2	CL:0001043	activated CD4-positive, alpha-beta T cell, human	13	1	CD4+, CD25+, CD127-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+ConT Treg-like		CD4 ConT			3	CL:0001044	effector CD4-positive, alpha-beta T cell	9	1	CD45+, CD4+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD25+, CD127-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+ConT Tfh-like		CD4 ConT			1	CL:0000896	activated CD4-positive, alpha-beta T cell	13	1	CD4+, CD25+, CD127-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+ConT Tfh-like		CD4 ConT			2	CL:0001043	activated CD4-positive, alpha-beta T cell, human	13	1	CD4+, CD25+, CD127-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+ConT Tfh-like		CD4 ConT			3	CL:0001044	effector CD4-positive, alpha-beta T cell	9	1	CD45+, CD4+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD25+, CD127-, CD185+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Th1-like		CD4 ConT			1	CL:0000896	activated CD4-positive, alpha-beta T cell	13	1	CD4+, CD25+, CD127-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185-, CD183+, CD196-, CD194-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Th1-like		CD4 ConT			2	CL:0001043	activated CD4-positive, alpha-beta T cell, human	13	1	CD4+, CD25+, CD127-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185-, CD183+, CD196-, CD194-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Th1-like		CD4 ConT			3	CL:0000545	T-helper 1 cell	12	0	CD4+, CD183+, CD196-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD25+, CD127-, CD185-, CD194-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Th2-like		CD4 ConT			1	CL:0000896	activated CD4-positive, alpha-beta T cell	13	1	CD4+, CD25+, CD127-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185-, CD183-, CD196-, CD194+, CD294+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.)	no	
+Th2-like		CD4 ConT			2	CL:0001043	activated CD4-positive, alpha-beta T cell, human	13	1	CD4+, CD25+, CD127-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185-, CD183-, CD196-, CD194+, CD294+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.)	no	
+Th2-like		CD4 ConT			3	CL:0001051	CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell	13	1	CD4+, CD183-, CD196-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD25+, CD127-, CD185-, CD194+, CD294+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.)	no	
+Th9-like					1	CL:0000546	T-helper 2 cell	12	0	CD4+, CD183-, CD196-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD25+, CD127-, CD185-, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+	no	
+Th9-like					2	CL:0000896	activated CD4-positive, alpha-beta T cell	12	0	CD4+, CD25+, CD127-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185-, CD183-, CD196-, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+	no	
+Th9-like					3	CL:0001043	activated CD4-positive, alpha-beta T cell, human	12	0	CD4+, CD25+, CD127-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185-, CD183-, CD196-, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+	no	
+Th17-like		CD4 ConT			1	CL:0000896	activated CD4-positive, alpha-beta T cell	13	1	CD4+, CD25+, CD127-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185-, CD183-, CD196+, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD161+, IL-17A+	no	
+Th17-like		CD4 ConT			2	CL:0001043	activated CD4-positive, alpha-beta T cell, human	13	1	CD4+, CD25+, CD127-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD185-, CD183-, CD196+, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD161+, IL-17A+	no	
+Th17-like		CD4 ConT			3	CL:0000899	T-helper 17 cell	12	0	CD4+, CD183-, CD196+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, TCRAB+/TCRGD- (no axiom on any alt.), TCRVA24-JA18+/TCRVA24+/TETRAMER+ (no axiom on any alt.), TCRVB11+, TCRVA7.2+/TETRAMER+ (no axiom on any alt.), CD161+, CD25+, CD127-, CD185-, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD161+, IL-17A+	no	
+CD4 PanT helper		CD4/CD8 PanT			1	CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4 PanT helper		CD4/CD8 PanT			2	CL:0000904	central memory CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4 PanT helper		CD4/CD8 PanT			3	CL:0000905	effector memory CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Th1-like			Surface Only		1	CL:0000545	T-helper 1 cell	16	0	CD4+, CD8-, CD183+, CD196-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD185-, CD194-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, IFNG+, IL-4-, IL-5-, IL-13-	no	
+Th1-like			Surface Only		2	CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	12	0	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183+, CD185-, CD194-, CD196-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, IFNG+, IL-4-, IL-5-, IL-13-	no	
+Th1-like			Surface Only		3	CL:0000904	central memory CD4-positive, alpha-beta T cell	12	0	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183+, CD185-, CD194-, CD196-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, IFNG+, IL-4-, IL-5-, IL-13-	no	
+Th2-like					1	CL:0000546	T-helper 2 cell	16	0	CD4+, CD8-, CD183-, CD196-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD185-, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.)	no	
+Th2-like					2	CL:0001045	naive CCR4-positive regulatory T cell	16	0	CD45+, CD4+, CD8-, CD194+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD196-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.)	no	
+Th2-like					3	CL:0001046	memory CCR4-positive regulatory T cell	16	0	CD45+, CD4+, CD8-, CD194+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD196-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD294+, IL-4+/IL-5+/IL-13+ (no axiom on any alt.)	no	
+Th9-like					1	CL:0000546	T-helper 2 cell	16	0	CD4+, CD8-, CD183-, CD196-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD185-, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+	no	
+Th9-like					2	CL:0001045	naive CCR4-positive regulatory T cell	16	0	CD45+, CD4+, CD8-, CD194+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD196-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+	no	
+Th9-like					3	CL:0001046	memory CCR4-positive regulatory T cell	16	0	CD45+, CD4+, CD8-, CD194+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD196-, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, CD198+, IL-9+	no	
+Th17-like					1	CL:0000899	T-helper 17 cell	16	0	CD4+, CD8-, CD183-, CD196+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, CD185-, CD194+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, IL-17A+	no	
+Th17-like					2	CL:0001045	naive CCR4-positive regulatory T cell	16	0	CD45+, CD4+, CD8-, CD194+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD196+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, IL-17A+	no	
+Th17-like					3	CL:0001046	memory CCR4-positive regulatory T cell	16	0	CD45+, CD4+, CD8-, CD194+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD183-, CD185-, CD196+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-, IL-17A+	no	
+Tfh					1	CL:0001057	myeloid dendritic cell, human	14	0	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Tfh					2	CL:0002000	Kit-positive erythroid progenitor cell	12	0	CD14- (1 of 3 alt.), CD19- (1 of 2 alt.), CD123-		HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Tfh					3	CL:0000782	myeloid dendritic cell	10	0	CD19- (1 of 2 alt.), CD123-, CD11C+ (hi)		CD14-/CD33-/CD64- (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4 PanT Treg		CD4/CD8 PanT			1	CL:0000896	activated CD4-positive, alpha-beta T cell	17	1	CD4+, CD8-, CD127-, CD25+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4 PanT Treg		CD4/CD8 PanT			2	CL:0001043	activated CD4-positive, alpha-beta T cell, human	17	1	CD4+, CD8-, CD127-, CD25+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD45+, CD3+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+CD4 PanT Treg		CD4/CD8 PanT			3	CL:0001044	effector CD4-positive, alpha-beta T cell	13	1	CD45+, CD4+, CD8-		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, CD127-, CD25+, HLA-DR+, CD11C+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Vg9 Vd2		TCRgd			1	CL:0002468	Gr1-low myeloid suppressor cell	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), TCRVD2+, TCRVG9+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-, DELTA1-	no	
+Vg9 Vd2		TCRgd			2	CL:0002477	adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), TCRVD2+, TCRVG9+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-, DELTA1-	no	
+Vg9 Vd2		TCRgd			3	CL:0002478	F4/80-negative adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), TCRVD2+, TCRVG9+, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-, DELTA1-	no	
+Vd2		TCRgd			1	CL:0002468	Gr1-low myeloid suppressor cell	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), VD1-, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-, DELTA1-	no	
+Vd2		TCRgd			2	CL:0002477	adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), VD1-, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-, DELTA1-	no	
+Vd2		TCRgd			3	CL:0002478	F4/80-negative adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), VD1-, HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-, DELTA1-	no	
+Vd3		TCRgd			1	CL:0002468	Gr1-low myeloid suppressor cell	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Vd3		TCRgd			2	CL:0002477	adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Vd3		TCRgd			3	CL:0002478	F4/80-negative adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Vg9 Vd1					1	CL:0002468	Gr1-low myeloid suppressor cell	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Vg9 Vd1					2	CL:0002477	adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Vg9 Vd1					3	CL:0002478	F4/80-negative adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Vd1		TCRgd			1	CL:0002468	Gr1-low myeloid suppressor cell	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Vd1		TCRgd			2	CL:0002477	adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Vd1		TCRgd			3	CL:0002478	F4/80-negative adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Vg9		TCRgd			1	CL:0002468	Gr1-low myeloid suppressor cell	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Vg9		TCRgd			2	CL:0002477	adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
+Vg9		TCRgd			3	CL:0002478	F4/80-negative adipose macrophage	6	0	CD45+, CD11C+		CD14-/CD33-/CD64- (no axiom on any alt.), CD19-/CD20- (no axiom on any alt.), CD123-, CD3+, TCRAB-/TCRGD+ (no axiom on any alt.), HLA-DR+, CD15-/CD66B- (no axiom on any alt.), CD16-	no	
diff --git a/reports/cl_pro_relationships.tsv b/reports/cl_pro_relationships.tsv
index 472f331..c11fd95 100644
--- a/reports/cl_pro_relationships.tsv
+++ b/reports/cl_pro_relationships.tsv
@@ -78,8 +78,8 @@ CL:0000096	mature neutrophil	RO:0002104	has plasma membrane part	positive	True	P
 CL:0000096	mature neutrophil	RO:0002104	has plasma membrane part	positive	True	PR:000001257	C-X-C chemokine receptor type 2	CD182 (exact); CDw128b (exact)	UniProtKB:P25025	UniProtKB:P35343	IUPHARobj:69	HGNC:6027	CXCR2
 CL:0000096	mature neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001332	cell adhesion molecule CEACAM8	CD66b (exact); CD67 (exact)	UniProtKB:P31997			HGNC:1820	CEACAM8
 CL:0000096	mature neutrophil	RO:0002104	has plasma membrane part	positive	True	PR:000001456	alpha-(1,3)-fucosyltransferase 4	CD15 (exact)	UniProtKB:P22083	UniProtKB:Q11127		HGNC:4015	FUT4
-CL:0000096	mature neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101			
-CL:0000096	mature neutrophil	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0000096	mature neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101		HGNC:3616	FCGR2A
+CL:0000096	mature neutrophil	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0000096	mature neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001879	leukosialin	CD43 (related)	UniProtKB:P16150	UniProtKB:P15702	PIRSF:PIRSF001994	HGNC:11249	SPN
 CL:0000096	mature neutrophil	RO:0002104	has plasma membrane part	positive	True	PR:000001944	transcription factor PU.1		UniProtKB:P17947	UniProtKB:P17433		HGNC:11241	SPI1
 CL:0000096	mature neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001969	urokinase plasminogen activator surface receptor	CD87 (exact)	UniProtKB:Q03405	UniProtKB:P35456	PIRSF:PIRSF002022	HGNC:9053	PLAUR
@@ -236,8 +236,8 @@ CL:0000560	band form neutrophil	RO:0002104	has plasma membrane part	positive	Fal
 CL:0000560	band form neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001332	cell adhesion molecule CEACAM8	CD66b (exact); CD67 (exact)	UniProtKB:P31997			HGNC:1820	CEACAM8
 CL:0000560	band form neutrophil	RO:0002104	has plasma membrane part	positive	True	PR:000001337	complement receptor type 1	CD35 (exact)	UniProtKB:P17927			HGNC:2334	CR1
 CL:0000560	band form neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001456	alpha-(1,3)-fucosyltransferase 4	CD15 (exact)	UniProtKB:P22083	UniProtKB:Q11127		HGNC:4015	FUT4
-CL:0000560	band form neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101			
-CL:0000560	band form neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0000560	band form neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101		HGNC:3616	FCGR2A
+CL:0000560	band form neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0000560	band form neutrophil	RO:0002104	has plasma membrane part	positive	True	PR:000001580	fMet-Leu-Phe receptor		UniProtKB:P21462	UniProtKB:P33766	IUPHARobj:222	HGNC:3826	FPR1
 CL:0000560	band form neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001879	leukosialin	CD43 (related)	UniProtKB:P16150	UniProtKB:P15702	PIRSF:PIRSF001994	HGNC:11249	SPN
 CL:0000560	band form neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001944	transcription factor PU.1		UniProtKB:P17947	UniProtKB:P17433		HGNC:11241	SPI1
@@ -246,7 +246,7 @@ CL:0000560	band form neutrophil	BFO:0000051	has part	positive	True	PR:000005307
 CL:0000560	band form neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000007597	protein c-Fos		UniProtKB:P01100	UniProtKB:P01101		HGNC:3796	FOS
 CL:0000562	nucleate erythrocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001945	transferrin receptor protein 1	CD71 (exact)	UniProtKB:P02786	UniProtKB:Q62351		HGNC:11763	TFRC
 CL:0000564	neutrophilic promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001012	integrin alpha-M	CD11 (exact); CD11B (related); CD11b (exact)	UniProtKB:P11215	UniProtKB:P05555	IUPHARobj:2452	HGNC:6149	ITGAM
-CL:0000564	neutrophilic promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0000564	neutrophilic promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0000564	neutrophilic promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001932	signal transducer CD24	CD24 (label); CD24A (related)	UniProtKB:P25063	UniProtKB:P24807		HGNC:1645	CD24
 CL:0000564	neutrophilic promyelocyte	CL:4030045	lacks_part	negative	True	PR:000009978	lactotransferrin		UniProtKB:P02788	UniProtKB:P08071		HGNC:6720	LTF
 CL:0000564	neutrophilic promyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001456	alpha-(1,3)-fucosyltransferase 4	CD15 (exact)	UniProtKB:P22083	UniProtKB:Q11127		HGNC:4015	FUT4
@@ -264,11 +264,11 @@ CL:0000580	neutrophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative
 CL:0000580	neutrophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001020	CD3 epsilon	CD3 (label); CD3E (exact); CD3e (exact)	UniProtKB:P07766	UniProtKB:P22646	IUPHARobj:2742	HGNC:1674	CD3E
 CL:0000580	neutrophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001024	neural cell adhesion molecule 1	CD56 (exact)	UniProtKB:P13591	UniProtKB:P13595	IUPHARobj:2769	HGNC:7656	NCAM1
 CL:0000580	neutrophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001084	T-cell surface glycoprotein CD8 alpha chain	CD8 (label); CD8A (exact); CD8a (exact)	UniProtKB:P01732	UniProtKB:P01731		HGNC:1706	CD8A
-CL:0000580	neutrophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0000580	neutrophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0000580	neutrophilic myelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001012	integrin alpha-M	CD11 (exact); CD11B (related); CD11b (exact)	UniProtKB:P11215	UniProtKB:P05555	IUPHARobj:2452	HGNC:6149	ITGAM
 CL:0000580	neutrophilic myelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001332	cell adhesion molecule CEACAM8	CD66b (exact); CD67 (exact)	UniProtKB:P31997			HGNC:1820	CEACAM8
 CL:0000580	neutrophilic myelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001456	alpha-(1,3)-fucosyltransferase 4	CD15 (exact)	UniProtKB:P22083	UniProtKB:Q11127		HGNC:4015	FUT4
-CL:0000580	neutrophilic myelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101			
+CL:0000580	neutrophilic myelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101		HGNC:3616	FCGR2A
 CL:0000580	neutrophilic myelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001879	leukosialin	CD43 (related)	UniProtKB:P16150	UniProtKB:P15702	PIRSF:PIRSF001994	HGNC:11249	SPN
 CL:0000580	neutrophilic myelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001892	CD33 molecule	CD33 (label)	UniProtKB:P20138	UniProtKB:Q63994	IUPHARobj:2601	HGNC:1659	CD33
 CL:0000580	neutrophilic myelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001932	signal transducer CD24	CD24 (label); CD24A (related)	UniProtKB:P25063	UniProtKB:P24807		HGNC:1645	CD24
@@ -294,8 +294,8 @@ CL:0000582	neutrophilic metamyelocyte	CL:4030046	lacks_plasma_membrane_part	nega
 CL:0000582	neutrophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001012	integrin alpha-M	CD11 (exact); CD11B (related); CD11b (exact)	UniProtKB:P11215	UniProtKB:P05555	IUPHARobj:2452	HGNC:6149	ITGAM
 CL:0000582	neutrophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001332	cell adhesion molecule CEACAM8	CD66b (exact); CD67 (exact)	UniProtKB:P31997			HGNC:1820	CEACAM8
 CL:0000582	neutrophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001456	alpha-(1,3)-fucosyltransferase 4	CD15 (exact)	UniProtKB:P22083	UniProtKB:Q11127		HGNC:4015	FUT4
-CL:0000582	neutrophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101			
-CL:0000582	neutrophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0000582	neutrophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101		HGNC:3616	FCGR2A
+CL:0000582	neutrophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0000582	neutrophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001879	leukosialin	CD43 (related)	UniProtKB:P16150	UniProtKB:P15702	PIRSF:PIRSF001994	HGNC:11249	SPN
 CL:0000582	neutrophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001892	CD33 molecule	CD33 (label)	UniProtKB:P20138	UniProtKB:Q63994	IUPHARobj:2601	HGNC:1659	CD33
 CL:0000582	neutrophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001932	signal transducer CD24	CD24 (label); CD24A (related)	UniProtKB:P25063	UniProtKB:P24807		HGNC:1645	CD24
@@ -347,7 +347,7 @@ CL:0000612	eosinophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative
 CL:0000612	eosinophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001020	CD3 epsilon	CD3 (label); CD3E (exact); CD3e (exact)	UniProtKB:P07766	UniProtKB:P22646	IUPHARobj:2742	HGNC:1674	CD3E
 CL:0000612	eosinophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001024	neural cell adhesion molecule 1	CD56 (exact)	UniProtKB:P13591	UniProtKB:P13595	IUPHARobj:2769	HGNC:7656	NCAM1
 CL:0000612	eosinophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001084	T-cell surface glycoprotein CD8 alpha chain	CD8 (label); CD8A (exact); CD8a (exact)	UniProtKB:P01732	UniProtKB:P01731		HGNC:1706	CD8A
-CL:0000612	eosinophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0000612	eosinophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0000612	eosinophilic myelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001012	integrin alpha-M	CD11 (exact); CD11B (related); CD11b (exact)	UniProtKB:P11215	UniProtKB:P05555	IUPHARobj:2452	HGNC:6149	ITGAM
 CL:0000612	eosinophilic myelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001254	C-C chemokine receptor type 1	CD191 (exact)	UniProtKB:P32246	UniProtKB:P51675	IUPHARobj:58	HGNC:1602	CCR1
 CL:0000612	eosinophilic myelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001255	C-C chemokine receptor type 3	CD193 (exact)	UniProtKB:P51677	UniProtKB:P51678	IUPHARobj:60	HGNC:1604	CCR3
@@ -385,7 +385,7 @@ CL:0000614	basophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative	F
 CL:0000614	basophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001020	CD3 epsilon	CD3 (label); CD3E (exact); CD3e (exact)	UniProtKB:P07766	UniProtKB:P22646	IUPHARobj:2742	HGNC:1674	CD3E
 CL:0000614	basophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001024	neural cell adhesion molecule 1	CD56 (exact)	UniProtKB:P13591	UniProtKB:P13595	IUPHARobj:2769	HGNC:7656	NCAM1
 CL:0000614	basophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001084	T-cell surface glycoprotein CD8 alpha chain	CD8 (label); CD8A (exact); CD8a (exact)	UniProtKB:P01732	UniProtKB:P01731		HGNC:1706	CD8A
-CL:0000614	basophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0000614	basophilic myelocyte	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0000614	basophilic myelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001012	integrin alpha-M	CD11 (exact); CD11B (related); CD11b (exact)	UniProtKB:P11215	UniProtKB:P05555	IUPHARobj:2452	HGNC:6149	ITGAM
 CL:0000614	basophilic myelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001332	cell adhesion molecule CEACAM8	CD66b (exact); CD67 (exact)	UniProtKB:P31997			HGNC:1820	CEACAM8
 CL:0000614	basophilic myelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001344	ectonucleotide pyrophosphatase/phosphodiesterase family member 3	CD203c (exact)	UniProtKB:O14638	UniProtKB:Q6DYE8		HGNC:3358	ENPP3
@@ -456,7 +456,7 @@ CL:0000769	basophilic metamyelocyte	RO:0002104	has plasma membrane part	positive
 CL:0000769	basophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001332	cell adhesion molecule CEACAM8	CD66b (exact); CD67 (exact)	UniProtKB:P31997			HGNC:1820	CEACAM8
 CL:0000769	basophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001344	ectonucleotide pyrophosphatase/phosphodiesterase family member 3	CD203c (exact)	UniProtKB:O14638	UniProtKB:Q6DYE8		HGNC:3358	ENPP3
 CL:0000769	basophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001456	alpha-(1,3)-fucosyltransferase 4	CD15 (exact)	UniProtKB:P22083	UniProtKB:Q11127		HGNC:4015	FUT4
-CL:0000769	basophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0000769	basophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0000769	basophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001892	CD33 molecule	CD33 (label)	UniProtKB:P20138	UniProtKB:Q63994	IUPHARobj:2601	HGNC:1659	CD33
 CL:0000769	basophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001932	signal transducer CD24	CD24 (label); CD24A (related)	UniProtKB:P25063	UniProtKB:P24807		HGNC:1645	CD24
 CL:0000769	basophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001950	tumor necrosis factor ligand superfamily member 5	CD154 (exact); CD40 (exact); CD40L (related); CD40LG (exact)	UniProtKB:P29965	UniProtKB:P27548	PIRSF:PIRSF016527	HGNC:11935	CD40LG
@@ -509,7 +509,7 @@ CL:0000773	eosinophilic metamyelocyte	RO:0002104	has plasma membrane part	positi
 CL:0000773	eosinophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001332	cell adhesion molecule CEACAM8	CD66b (exact); CD67 (exact)	UniProtKB:P31997			HGNC:1820	CEACAM8
 CL:0000773	eosinophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001343	CD69 molecule	CD69 (label)	UniProtKB:Q07108	UniProtKB:P37217		HGNC:1694	CD69
 CL:0000773	eosinophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001456	alpha-(1,3)-fucosyltransferase 4	CD15 (exact)	UniProtKB:P22083	UniProtKB:Q11127		HGNC:4015	FUT4
-CL:0000773	eosinophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0000773	eosinophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0000773	eosinophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001892	CD33 molecule	CD33 (label)	UniProtKB:P20138	UniProtKB:Q63994	IUPHARobj:2601	HGNC:1659	CD33
 CL:0000773	eosinophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001932	signal transducer CD24	CD24 (label); CD24A (related)	UniProtKB:P25063	UniProtKB:P24807		HGNC:1645	CD24
 CL:0000773	eosinophilic metamyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001969	urokinase plasminogen activator surface receptor	CD87 (exact)	UniProtKB:Q03405	UniProtKB:P35456	PIRSF:PIRSF002022	HGNC:9053	PLAUR
@@ -533,7 +533,7 @@ CL:0000775	neutrophil	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:00
 CL:0000775	neutrophil	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001084	T-cell surface glycoprotein CD8 alpha chain	CD8 (label); CD8A (exact); CD8a (exact)	UniProtKB:P01732	UniProtKB:P01731		HGNC:1706	CD8A
 CL:0000775	neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001012	integrin alpha-M	CD11 (exact); CD11B (related); CD11b (exact)	UniProtKB:P11215	UniProtKB:P05555	IUPHARobj:2452	HGNC:6149	ITGAM
 CL:0000775	neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001332	cell adhesion molecule CEACAM8	CD66b (exact); CD67 (exact)	UniProtKB:P31997			HGNC:1820	CEACAM8
-CL:0000775	neutrophil	RO:0002104	has plasma membrane part	positive	True	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101			
+CL:0000775	neutrophil	RO:0002104	has plasma membrane part	positive	True	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101		HGNC:3616	FCGR2A
 CL:0000775	neutrophil	RO:0002104	has plasma membrane part	positive	True	PR:000001879	leukosialin	CD43 (related)	UniProtKB:P16150	UniProtKB:P15702	PIRSF:PIRSF001994	HGNC:11249	SPN
 CL:0000775	neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001969	urokinase plasminogen activator surface receptor	CD87 (exact)	UniProtKB:Q03405	UniProtKB:P35456	PIRSF:PIRSF002022	HGNC:9053	PLAUR
 CL:0000776	immature neutrophil	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001002	CD19 molecule	CD19 (label)	UniProtKB:P15391	UniProtKB:P25918	IUPHARobj:2764; PIRSF:PIRSF016630	HGNC:1633	CD19
@@ -542,7 +542,7 @@ CL:0000776	immature neutrophil	CL:4030046	lacks_plasma_membrane_part	negative	Fa
 CL:0000776	immature neutrophil	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001084	T-cell surface glycoprotein CD8 alpha chain	CD8 (label); CD8A (exact); CD8a (exact)	UniProtKB:P01732	UniProtKB:P01731		HGNC:1706	CD8A
 CL:0000776	immature neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001012	integrin alpha-M	CD11 (exact); CD11B (related); CD11b (exact)	UniProtKB:P11215	UniProtKB:P05555	IUPHARobj:2452	HGNC:6149	ITGAM
 CL:0000776	immature neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001332	cell adhesion molecule CEACAM8	CD66b (exact); CD67 (exact)	UniProtKB:P31997			HGNC:1820	CEACAM8
-CL:0000776	immature neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101			
+CL:0000776	immature neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101		HGNC:3616	FCGR2A
 CL:0000776	immature neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001879	leukosialin	CD43 (related)	UniProtKB:P16150	UniProtKB:P15702	PIRSF:PIRSF001994	HGNC:11249	SPN
 CL:0000776	immature neutrophil	RO:0002104	has plasma membrane part	positive	False	PR:000001969	urokinase plasminogen activator surface receptor	CD87 (exact)	UniProtKB:Q03405	UniProtKB:P35456	PIRSF:PIRSF002022	HGNC:9053	PLAUR
 CL:0000778	mononuclear osteoclast	BFO:0000051	has part	positive	False	PR:000001850	cathepsin K		UniProtKB:P43235	UniProtKB:P55097	IUPHARobj:2350	HGNC:2536	CTSK
@@ -702,7 +702,7 @@ CL:0000825	pro-NK cell	RO:0002104	has plasma membrane part	positive	True	PR:0000
 CL:0000826	pro-B cell	BFO:0000051	has part	positive	True	PR:000001903	paired box protein PAX-5		UniProtKB:Q02548	UniProtKB:Q02650		HGNC:8619	PAX5
 CL:0000826	pro-B cell	BFO:0000051	has part	positive	True	PR:000006611	DNA nucleotidylexotransferase		UniProtKB:P04053	UniProtKB:P09838		HGNC:2983	DNTT
 CL:0000830	basophilic promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001012	integrin alpha-M	CD11 (exact); CD11B (related); CD11b (exact)	UniProtKB:P11215	UniProtKB:P05555	IUPHARobj:2452	HGNC:6149	ITGAM
-CL:0000830	basophilic promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0000830	basophilic promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0000830	basophilic promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001932	signal transducer CD24	CD24 (label); CD24A (related)	UniProtKB:P25063	UniProtKB:P24807		HGNC:1645	CD24
 CL:0000830	basophilic promyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001456	alpha-(1,3)-fucosyltransferase 4	CD15 (exact)	UniProtKB:P22083	UniProtKB:Q11127		HGNC:4015	FUT4
 CL:0000830	basophilic promyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001892	CD33 molecule	CD33 (label)	UniProtKB:P20138	UniProtKB:Q63994	IUPHARobj:2601	HGNC:1659	CD33
@@ -730,12 +730,12 @@ CL:0000831	mast cell progenitor	BFO:0000051	has part	positive	True	PR:000007857
 CL:0000831	mast cell progenitor	BFO:0000051	has part	positive	True	PR:000007858	endothelial transcription factor GATA-2		UniProtKB:P23769	UniProtKB:O09100		HGNC:4171	GATA2
 CL:0000831	mast cell progenitor	RO:0002104	has plasma membrane part	positive	True	PR:000016401	transmembrane emp24 domain-containing protein 1		UniProtKB:Q13445	UniProtKB:Q3V009		HGNC:17291	TMED1
 CL:0000833	eosinophilic promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001012	integrin alpha-M	CD11 (exact); CD11B (related); CD11b (exact)	UniProtKB:P11215	UniProtKB:P05555	IUPHARobj:2452	HGNC:6149	ITGAM
-CL:0000833	eosinophilic promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0000833	eosinophilic promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0000833	eosinophilic promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001932	signal transducer CD24	CD24 (label); CD24A (related)	UniProtKB:P25063	UniProtKB:P24807		HGNC:1645	CD24
 CL:0000833	eosinophilic promyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001456	alpha-(1,3)-fucosyltransferase 4	CD15 (exact)	UniProtKB:P22083	UniProtKB:Q11127		HGNC:4015	FUT4
 CL:0000833	eosinophilic promyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001892	CD33 molecule	CD33 (label)	UniProtKB:P20138	UniProtKB:Q63994	IUPHARobj:2601	HGNC:1659	CD33
 CL:0000836	promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001012	integrin alpha-M	CD11 (exact); CD11B (related); CD11b (exact)	UniProtKB:P11215	UniProtKB:P05555	IUPHARobj:2452	HGNC:6149	ITGAM
-CL:0000836	promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0000836	promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0000836	promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001932	signal transducer CD24	CD24 (label); CD24A (related)	UniProtKB:P25063	UniProtKB:P24807		HGNC:1645	CD24
 CL:0000836	promyelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001456	alpha-(1,3)-fucosyltransferase 4	CD15 (exact)	UniProtKB:P22083	UniProtKB:Q11127		HGNC:4015	FUT4
 CL:0000836	promyelocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001892	CD33 molecule	CD33 (label)	UniProtKB:P20138	UniProtKB:Q63994	IUPHARobj:2601	HGNC:1659	CD33
@@ -828,7 +828,7 @@ CL:0000876	splenic white pulp macrophage	RO:0002104	has plasma membrane part	pos
 CL:0000877	splenic tingible body macrophage	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001813	adhesion G protein-coupled receptor E1		UniProtKB:Q14246	UniProtKB:Q61549	IUPHARobj:182; PIRSF:PIRSF038685	HGNC:3336	ADGRE1
 CL:0000877	splenic tingible body macrophage	RO:0002104	has plasma membrane part	positive	False	PR:000002064	macrosialin	CD68 (exact)	UniProtKB:P34810	UniProtKB:P31996		HGNC:1693	CD68
 CL:0000877	splenic tingible body macrophage	RO:0002104	has plasma membrane part	positive	True	PR:000010329	tyrosine-protein kinase Mer		UniProtKB:Q12866	UniProtKB:Q60805	IUPHARobj:1837	HGNC:7027	MERTK
-CL:0000881	perivascular macrophage	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0000881	perivascular macrophage	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0000881	perivascular macrophage	RO:0002104	has plasma membrane part	positive	True	PR:000001889	CD14 molecule	CD14 (label)	UniProtKB:P08571	UniProtKB:P10810	PIRSF:PIRSF002017	HGNC:1628	CD14
 CL:0000881	perivascular macrophage	RO:0002104	has plasma membrane part	positive	True	PR:000001925	scavenger receptor cysteine-rich type 1 protein M130	CD163 (exact)	UniProtKB:Q86VB7	UniProtKB:Q2VLH6		HGNC:1631	CD163
 CL:0000887	lymph node subcapsular sinus macrophage	RO:0015015	has high plasma membrane amount	high	False	PR:000001931	sialoadhesin	CD169 (exact)	UniProtKB:Q9BZZ2	UniProtKB:Q62230		HGNC:11127	SIGLEC1
@@ -1065,7 +1065,7 @@ CL:0000938	CD16-negative, CD56-bright natural killer cell, human	RO:0015015	has
 CL:0000938	CD16-negative, CD56-bright natural killer cell, human	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001002	CD19 molecule	CD19 (label)	UniProtKB:P15391	UniProtKB:P25918	IUPHARobj:2764; PIRSF:PIRSF016630	HGNC:1633	CD19
 CL:0000938	CD16-negative, CD56-bright natural killer cell, human	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001020	CD3 epsilon	CD3 (label); CD3E (exact); CD3e (exact)	UniProtKB:P07766	UniProtKB:P22646	IUPHARobj:2742	HGNC:1674	CD3E
 CL:0000938	CD16-negative, CD56-bright natural killer cell, human	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	UniProtKB:P11836	UniProtKB:P19437	PIRSF:PIRSF001995; IUPHARobj:2628	HGNC:7315	MS4A1
-CL:0000938	CD16-negative, CD56-bright natural killer cell, human	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0000938	CD16-negative, CD56-bright natural killer cell, human	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0000938	CD16-negative, CD56-bright natural killer cell, human	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001889	CD14 molecule	CD14 (label)	UniProtKB:P08571	UniProtKB:P10810	PIRSF:PIRSF002017	HGNC:1628	CD14
 CL:0000938	CD16-negative, CD56-bright natural killer cell, human	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000002015	MHC class II histocompatibility antigen alpha chain DRA		UniProtKB:P01903			HGNC:4947	HLA-DRA
 CL:0000938	CD16-negative, CD56-bright natural killer cell, human	RO:0002104	has plasma membrane part	positive	True	PR:000001319	SLAM family member 5	CD84 (exact)	UniProtKB:Q9UIB8	UniProtKB:Q18PI6		HGNC:1704	CD84
@@ -1075,7 +1075,7 @@ CL:0000939	CD16-positive, CD56-dim natural killer cell, human	CL:4030046	lacks_p
 CL:0000939	CD16-positive, CD56-dim natural killer cell, human	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	UniProtKB:P11836	UniProtKB:P19437	PIRSF:PIRSF001995; IUPHARobj:2628	HGNC:7315	MS4A1
 CL:0000939	CD16-positive, CD56-dim natural killer cell, human	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001889	CD14 molecule	CD14 (label)	UniProtKB:P08571	UniProtKB:P10810	PIRSF:PIRSF002017	HGNC:1628	CD14
 CL:0000939	CD16-positive, CD56-dim natural killer cell, human	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000002015	MHC class II histocompatibility antigen alpha chain DRA		UniProtKB:P01903			HGNC:4947	HLA-DRA
-CL:0000939	CD16-positive, CD56-dim natural killer cell, human	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0000939	CD16-positive, CD56-dim natural killer cell, human	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0000941	thymic conventional dendritic cell	RO:0015015	has high plasma membrane amount	high	False	PR:000001013	integrin alpha-X	CD11 (exact); CD11C (related); CD11c (exact)	UniProtKB:P20702	UniProtKB:Q9QXH4	IUPHARobj:2454	HGNC:6152	ITGAX
 CL:0000941	thymic conventional dendritic cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001002	CD19 molecule	CD19 (label)	UniProtKB:P15391	UniProtKB:P25918	IUPHARobj:2764; PIRSF:PIRSF016630	HGNC:1633	CD19
 CL:0000941	thymic conventional dendritic cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001003	CD34 molecule	CD34 (label)	UniProtKB:P28906	UniProtKB:Q64314	PIRSF:PIRSF028749	HGNC:1662	CD34
@@ -1745,7 +1745,7 @@ CL:0001024	CD34-positive, CD38-negative hematopoietic stem cell	CL:4030046	lacks
 CL:0001024	CD34-positive, CD38-negative hematopoietic stem cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001084	T-cell surface glycoprotein CD8 alpha chain	CD8 (label); CD8A (exact); CD8a (exact)	UniProtKB:P01732	UniProtKB:P01731		HGNC:1706	CD8A
 CL:0001024	CD34-positive, CD38-negative hematopoietic stem cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	UniProtKB:P11836	UniProtKB:P19437	PIRSF:PIRSF001995; IUPHARobj:2628	HGNC:7315	MS4A1
 CL:0001024	CD34-positive, CD38-negative hematopoietic stem cell	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001408	ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1	CD38 (exact)	UniProtKB:P28907	UniProtKB:P56528	IUPHARobj:2766	HGNC:1667	CD38
-CL:0001024	CD34-positive, CD38-negative hematopoietic stem cell	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0001024	CD34-positive, CD38-negative hematopoietic stem cell	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0001024	CD34-positive, CD38-negative hematopoietic stem cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001839	T-cell surface glycoprotein CD5	CD5 (label)	UniProtKB:P06127	UniProtKB:P13379		HGNC:1685	CD5
 CL:0001024	CD34-positive, CD38-negative hematopoietic stem cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001889	CD14 molecule	CD14 (label)	UniProtKB:P08571	UniProtKB:P10810	PIRSF:PIRSF002017	HGNC:1628	CD14
 CL:0001024	CD34-positive, CD38-negative hematopoietic stem cell	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001892	CD33 molecule	CD33 (label)	UniProtKB:P20138	UniProtKB:Q63994	IUPHARobj:2601	HGNC:1659	CD33
@@ -1934,7 +1934,7 @@ CL:0001054	CD14-positive monocyte	CL:4030046	lacks_plasma_membrane_part	negative
 CL:0001054	CD14-positive monocyte	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001020	CD3 epsilon	CD3 (label); CD3E (exact); CD3e (exact)	UniProtKB:P07766	UniProtKB:P22646	IUPHARobj:2742	HGNC:1674	CD3E
 CL:0001054	CD14-positive monocyte	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	UniProtKB:P11836	UniProtKB:P19437	PIRSF:PIRSF001995; IUPHARobj:2628	HGNC:7315	MS4A1
 CL:0001054	CD14-positive monocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001889	CD14 molecule	CD14 (label)	UniProtKB:P08571	UniProtKB:P10810	PIRSF:PIRSF002017	HGNC:1628	CD14
-CL:0001055	CD14-positive, CD16-low monocyte	RO:0015016	has low plasma membrane amount	low	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0001055	CD14-positive, CD16-low monocyte	RO:0015016	has low plasma membrane amount	low	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0001055	CD14-positive, CD16-low monocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001002	CD19 molecule	CD19 (label)	UniProtKB:P15391	UniProtKB:P25918	IUPHARobj:2764; PIRSF:PIRSF016630	HGNC:1633	CD19
 CL:0001055	CD14-positive, CD16-low monocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001020	CD3 epsilon	CD3 (label); CD3E (exact); CD3e (exact)	UniProtKB:P07766	UniProtKB:P22646	IUPHARobj:2742	HGNC:1674	CD3E
 CL:0001055	CD14-positive, CD16-low monocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001199	C-C chemokine receptor type 2	CD192 (exact)	UniProtKB:P41597	UniProtKB:P51683	IUPHARobj:59	HGNC:1603	CCR2
@@ -2158,7 +2158,7 @@ CL:0002001	CD34-positive, CD38-positive granulocyte monocyte progenitor	RO:00021
 CL:0002001	CD34-positive, CD38-positive granulocyte monocyte progenitor	RO:0002104	has plasma membrane part	positive	False	PR:000001865	interleukin-3 receptor class 2 alpha chain	CD123 (exact)	UniProtKB:P26951	UniProtKB:P26952	IUPHARobj:1705	HGNC:6012	IL3RA
 CL:0002001	CD34-positive, CD38-positive granulocyte monocyte progenitor	BFO:0000051	has part	positive	False	PR:000001944	transcription factor PU.1		UniProtKB:P17947	UniProtKB:P17433		HGNC:11241	SPI1
 CL:0002001	CD34-positive, CD38-positive granulocyte monocyte progenitor	BFO:0000051	has part	positive	False	PR:000005307	CCAAT/enhancer-binding protein alpha		UniProtKB:P49715	UniProtKB:P53566		HGNC:1833	CEBPA
-CL:0002002	Kit-positive granulocyte monocyte progenitor	RO:0015015	has high plasma membrane amount	high	True	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101			
+CL:0002002	Kit-positive granulocyte monocyte progenitor	RO:0015015	has high plasma membrane amount	high	True	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101		HGNC:3616	FCGR2A
 CL:0002002	Kit-positive granulocyte monocyte progenitor	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001002	CD19 molecule	CD19 (label)	UniProtKB:P15391	UniProtKB:P25918	IUPHARobj:2764; PIRSF:PIRSF016630	HGNC:1633	CD19
 CL:0002002	Kit-positive granulocyte monocyte progenitor	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001004	CD4 molecule	CD4 (label)	UniProtKB:P01730	UniProtKB:P06332	PIRSF:PIRSF001977	HGNC:1678	CD4
 CL:0002002	Kit-positive granulocyte monocyte progenitor	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001012	integrin alpha-M	CD11 (exact); CD11B (related); CD11b (exact)	UniProtKB:P11215	UniProtKB:P05555	IUPHARobj:2452	HGNC:6149	ITGAM
@@ -2216,7 +2216,7 @@ CL:0002005	CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell
 CL:0002005	CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell	RO:0002104	has plasma membrane part	positive	True	PR:000001003	CD34 molecule	CD34 (label)	UniProtKB:P28906	UniProtKB:Q64314	PIRSF:PIRSF028749	HGNC:1662	CD34
 CL:0002005	CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell	RO:0002104	has plasma membrane part	positive	True	PR:000001408	ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1	CD38 (exact)	UniProtKB:P28907	UniProtKB:P56528	IUPHARobj:2766	HGNC:1667	CD38
 CL:0002006	Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001003	CD34 molecule	CD34 (label)	UniProtKB:P28906	UniProtKB:Q64314	PIRSF:PIRSF028749	HGNC:1662	CD34
-CL:0002006	Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101			
+CL:0002006	Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101		HGNC:3616	FCGR2A
 CL:0002006	Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001843	Thy-1 membrane glycoprotein	CD90 (exact); CDw90 (exact)	UniProtKB:P04216	UniProtKB:P01831	PIRSF:PIRSF038777	HGNC:11801	THY1
 CL:0002006	Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001869	interleukin-7 receptor subunit alpha	CD127 (exact); CDw127 (exact)	UniProtKB:P16871	UniProtKB:P16872	IUPHARobj:1698; PIRSF:PIRSF001960	HGNC:6024	IL7R
 CL:0002006	Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000002979	lymphocyte antigen 6A-2/6E-1			UniProtKB:P05533			
@@ -2432,8 +2432,8 @@ CL:0002023	CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor
 CL:0002023	CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell	RO:0002104	has plasma membrane part	positive	True	PR:000001003	CD34 molecule	CD34 (label)	UniProtKB:P28906	UniProtKB:Q64314	PIRSF:PIRSF028749	HGNC:1662	CD34
 CL:0002023	CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell	RO:0002104	has plasma membrane part	positive	True	PR:000001907	platelet glycoprotein Ib alpha chain	CD42b (exact)	UniProtKB:P07359	UniProtKB:O35930	PIRSF:PIRSF002493	HGNC:4439	GP1BA
 CL:0002023	CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell	RO:0002104	has plasma membrane part	positive	True	PR:000009127	integrin alpha-IIb	CD41 (exact)	UniProtKB:P08514	UniProtKB:Q9QUM0	IUPHARobj:2441	HGNC:6138	ITGA2B
-CL:0002024	Kit-positive megakaryocyte progenitor cell	RO:0015016	has low plasma membrane amount	low	True	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101			
-CL:0002024	Kit-positive megakaryocyte progenitor cell	RO:0015016	has low plasma membrane amount	low	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0002024	Kit-positive megakaryocyte progenitor cell	RO:0015016	has low plasma membrane amount	low	True	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101		HGNC:3616	FCGR2A
+CL:0002024	Kit-positive megakaryocyte progenitor cell	RO:0015016	has low plasma membrane amount	low	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0002024	Kit-positive megakaryocyte progenitor cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001002	CD19 molecule	CD19 (label)	UniProtKB:P15391	UniProtKB:P25918	IUPHARobj:2764; PIRSF:PIRSF016630	HGNC:1633	CD19
 CL:0002024	Kit-positive megakaryocyte progenitor cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001004	CD4 molecule	CD4 (label)	UniProtKB:P01730	UniProtKB:P06332	PIRSF:PIRSF001977	HGNC:1678	CD4
 CL:0002024	Kit-positive megakaryocyte progenitor cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001012	integrin alpha-M	CD11 (exact); CD11B (related); CD11b (exact)	UniProtKB:P11215	UniProtKB:P05555	IUPHARobj:2452	HGNC:6149	ITGAM
@@ -2662,8 +2662,8 @@ CL:0002044	Kit-positive, integrin beta7-high basophil mast progenitor cell	CL:40
 CL:0002044	Kit-positive, integrin beta7-high basophil mast progenitor cell	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000002979	lymphocyte antigen 6A-2/6E-1			UniProtKB:P05533			
 CL:0002044	Kit-positive, integrin beta7-high basophil mast progenitor cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000007431	high affinity immunoglobulin epsilon receptor subunit alpha		UniProtKB:P12319	UniProtKB:P20489	IUPHARobj:2933	HGNC:3609	FCER1A
 CL:0002044	Kit-positive, integrin beta7-high basophil mast progenitor cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000016401	transmembrane emp24 domain-containing protein 1		UniProtKB:Q13445	UniProtKB:Q3V009		HGNC:17291	TMED1
-CL:0002044	Kit-positive, integrin beta7-high basophil mast progenitor cell	RO:0002104	has plasma membrane part	positive	True	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101			
-CL:0002044	Kit-positive, integrin beta7-high basophil mast progenitor cell	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0002044	Kit-positive, integrin beta7-high basophil mast progenitor cell	RO:0002104	has plasma membrane part	positive	True	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101		HGNC:3616	FCGR2A
+CL:0002044	Kit-positive, integrin beta7-high basophil mast progenitor cell	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0002044	Kit-positive, integrin beta7-high basophil mast progenitor cell	RO:0002104	has plasma membrane part	positive	False	PR:000001867	interleukin-5 receptor subunit alpha	CD125 (exact); CDw125 (exact)	UniProtKB:Q01344	UniProtKB:P21183	IUPHARobj:1706; PIRSF:PIRSF018419	HGNC:6017	IL5RA
 CL:0002044	Kit-positive, integrin beta7-high basophil mast progenitor cell	BFO:0000051	has part	positive	False	PR:000005307	CCAAT/enhancer-binding protein alpha		UniProtKB:P49715	UniProtKB:P53566		HGNC:1833	CEBPA
 CL:0002044	Kit-positive, integrin beta7-high basophil mast progenitor cell	BFO:0000051	has part	positive	False	PR:000007857	erythroid transcription factor		UniProtKB:P15976	UniProtKB:P17679		HGNC:4170	GATA1
@@ -2782,7 +2782,7 @@ CL:0002057	CD14-positive, CD16-negative classical monocyte	RO:0015015	has high p
 CL:0002057	CD14-positive, CD16-negative classical monocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001002	CD19 molecule	CD19 (label)	UniProtKB:P15391	UniProtKB:P25918	IUPHARobj:2764; PIRSF:PIRSF016630	HGNC:1633	CD19
 CL:0002057	CD14-positive, CD16-negative classical monocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001020	CD3 epsilon	CD3 (label); CD3E (exact); CD3e (exact)	UniProtKB:P07766	UniProtKB:P22646	IUPHARobj:2742	HGNC:1674	CD3E
 CL:0002057	CD14-positive, CD16-negative classical monocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	UniProtKB:P11836	UniProtKB:P19437	PIRSF:PIRSF001995; IUPHARobj:2628	HGNC:7315	MS4A1
-CL:0002057	CD14-positive, CD16-negative classical monocyte	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0002057	CD14-positive, CD16-negative classical monocyte	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0002057	CD14-positive, CD16-negative classical monocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001465	high affinity immunoglobulin gamma Fc receptor I	CD64 (exact)	UniProtKB:P12314	UniProtKB:P26151		HGNC:3613	FCGR1A
 CL:0002057	CD14-positive, CD16-negative classical monocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001889	CD14 molecule	CD14 (label)	UniProtKB:P08571	UniProtKB:P10810	PIRSF:PIRSF002017	HGNC:1628	CD14
 CL:0002057	CD14-positive, CD16-negative classical monocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001925	scavenger receptor cysteine-rich type 1 protein M130	CD163 (exact)	UniProtKB:Q86VB7	UniProtKB:Q2VLH6		HGNC:1631	CD163
@@ -2999,12 +2999,12 @@ CL:0002128	Tc17 cell	RO:0002104	has plasma membrane part	positive	False	PR:00000
 CL:0002128	Tc17 cell	RO:0002104	has plasma membrane part	positive	False	PR:000025402	T cell receptor co-receptor CD8	CD8 (label)					
 CL:0002128	Tc17 cell	BFO:0000051	has part	positive	False	PR:000025403	T-cell surface glycoprotein CD8 alpha chain isoform 1	CD8 (label); CD8A (exact)	UniProtKB:P01732-1			HGNC:1706	CD8A
 CL:0002151	late promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001012	integrin alpha-M	CD11 (exact); CD11B (related); CD11b (exact)	UniProtKB:P11215	UniProtKB:P05555	IUPHARobj:2452	HGNC:6149	ITGAM
-CL:0002151	late promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0002151	late promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0002151	late promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001932	signal transducer CD24	CD24 (label); CD24A (related)	UniProtKB:P25063	UniProtKB:P24807		HGNC:1645	CD24
 CL:0002151	late promyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001456	alpha-(1,3)-fucosyltransferase 4	CD15 (exact)	UniProtKB:P22083	UniProtKB:Q11127		HGNC:4015	FUT4
 CL:0002151	late promyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001892	CD33 molecule	CD33 (label)	UniProtKB:P20138	UniProtKB:Q63994	IUPHARobj:2601	HGNC:1659	CD33
 CL:0002154	early promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001012	integrin alpha-M	CD11 (exact); CD11B (related); CD11b (exact)	UniProtKB:P11215	UniProtKB:P05555	IUPHARobj:2452	HGNC:6149	ITGAM
-CL:0002154	early promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0002154	early promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0002154	early promyelocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001932	signal transducer CD24	CD24 (label); CD24A (related)	UniProtKB:P25063	UniProtKB:P24807		HGNC:1645	CD24
 CL:0002154	early promyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001456	alpha-(1,3)-fucosyltransferase 4	CD15 (exact)	UniProtKB:P22083	UniProtKB:Q11127		HGNC:4015	FUT4
 CL:0002154	early promyelocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001892	CD33 molecule	CD33 (label)	UniProtKB:P20138	UniProtKB:Q63994	IUPHARobj:2601	HGNC:1659	CD33
@@ -3034,7 +3034,7 @@ CL:0002343	decidual natural killer cell, human	RO:0015015	has high plasma membra
 CL:0002343	decidual natural killer cell, human	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001002	CD19 molecule	CD19 (label)	UniProtKB:P15391	UniProtKB:P25918	IUPHARobj:2764; PIRSF:PIRSF016630	HGNC:1633	CD19
 CL:0002343	decidual natural killer cell, human	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001020	CD3 epsilon	CD3 (label); CD3E (exact); CD3e (exact)	UniProtKB:P07766	UniProtKB:P22646	IUPHARobj:2742	HGNC:1674	CD3E
 CL:0002343	decidual natural killer cell, human	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	UniProtKB:P11836	UniProtKB:P19437	PIRSF:PIRSF001995; IUPHARobj:2628	HGNC:7315	MS4A1
-CL:0002343	decidual natural killer cell, human	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0002343	decidual natural killer cell, human	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0002343	decidual natural killer cell, human	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001889	CD14 molecule	CD14 (label)	UniProtKB:P08571	UniProtKB:P10810	PIRSF:PIRSF002017	HGNC:1628	CD14
 CL:0002343	decidual natural killer cell, human	RO:0002104	has plasma membrane part	positive	True	PR:000009766	galectin-1		UniProtKB:P09382	UniProtKB:P16045		HGNC:6561	LGALS1
 CL:0002344	CD56-negative, CD161-positive immature natural killer cell, human	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001002	CD19 molecule	CD19 (label)	UniProtKB:P15391	UniProtKB:P25918	IUPHARobj:2764; PIRSF:PIRSF016630	HGNC:1633	CD19
@@ -3186,12 +3186,12 @@ CL:0002396	CD14-low, CD16-positive monocyte	RO:0015016	has low plasma membrane a
 CL:0002396	CD14-low, CD16-positive monocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001002	CD19 molecule	CD19 (label)	UniProtKB:P15391	UniProtKB:P25918	IUPHARobj:2764; PIRSF:PIRSF016630	HGNC:1633	CD19
 CL:0002396	CD14-low, CD16-positive monocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001020	CD3 epsilon	CD3 (label); CD3E (exact); CD3e (exact)	UniProtKB:P07766	UniProtKB:P22646	IUPHARobj:2742	HGNC:1674	CD3E
 CL:0002396	CD14-low, CD16-positive monocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	UniProtKB:P11836	UniProtKB:P19437	PIRSF:PIRSF001995; IUPHARobj:2628	HGNC:7315	MS4A1
-CL:0002396	CD14-low, CD16-positive monocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0002396	CD14-low, CD16-positive monocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0002397	CD14-positive, CD16-positive monocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001002	CD19 molecule	CD19 (label)	UniProtKB:P15391	UniProtKB:P25918	IUPHARobj:2764; PIRSF:PIRSF016630	HGNC:1633	CD19
 CL:0002397	CD14-positive, CD16-positive monocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001020	CD3 epsilon	CD3 (label); CD3E (exact); CD3e (exact)	UniProtKB:P07766	UniProtKB:P22646	IUPHARobj:2742	HGNC:1674	CD3E
 CL:0002397	CD14-positive, CD16-positive monocyte	CL:4030046	lacks_plasma_membrane_part	negative	True	PR:000001199	C-C chemokine receptor type 2	CD192 (exact)	UniProtKB:P41597	UniProtKB:P51683	IUPHARobj:59	HGNC:1603	CCR2
 CL:0002397	CD14-positive, CD16-positive monocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	UniProtKB:P11836	UniProtKB:P19437	PIRSF:PIRSF001995; IUPHARobj:2628	HGNC:7315	MS4A1
-CL:0002397	CD14-positive, CD16-positive monocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0002397	CD14-positive, CD16-positive monocyte	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0002397	CD14-positive, CD16-positive monocyte	RO:0002104	has plasma membrane part	positive	False	PR:000001889	CD14 molecule	CD14 (label)	UniProtKB:P08571	UniProtKB:P10810	PIRSF:PIRSF002017	HGNC:1628	CD14
 CL:0002398	Gr1-positive, CD43-positive monocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001002	CD19 molecule	CD19 (label)	UniProtKB:P15391	UniProtKB:P25918	IUPHARobj:2764; PIRSF:PIRSF016630	HGNC:1633	CD19
 CL:0002398	Gr1-positive, CD43-positive monocyte	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001020	CD3 epsilon	CD3 (label); CD3E (exact); CD3e (exact)	UniProtKB:P07766	UniProtKB:P22646	IUPHARobj:2742	HGNC:1674	CD3E
@@ -3821,7 +3821,7 @@ CL:0002532	CD16-positive myeloid dendritic cell	CL:4030046	lacks_plasma_membrane
 CL:0002532	CD16-positive myeloid dendritic cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001024	neural cell adhesion molecule 1	CD56 (exact)	UniProtKB:P13591	UniProtKB:P13595	IUPHARobj:2769	HGNC:7656	NCAM1
 CL:0002532	CD16-positive myeloid dendritic cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	UniProtKB:P11836	UniProtKB:P19437	PIRSF:PIRSF001995; IUPHARobj:2628	HGNC:7315	MS4A1
 CL:0002532	CD16-positive myeloid dendritic cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001865	interleukin-3 receptor class 2 alpha chain	CD123 (exact)	UniProtKB:P26951	UniProtKB:P26952	IUPHARobj:1705	HGNC:6012	IL3RA
-CL:0002532	CD16-positive myeloid dendritic cell	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0002532	CD16-positive myeloid dendritic cell	RO:0002104	has plasma membrane part	positive	True	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0002533	immature CD16-positive myeloid dendritic cell	RO:0015015	has high plasma membrane amount	high	False	PR:000001013	integrin alpha-X	CD11 (exact); CD11C (related); CD11c (exact)	UniProtKB:P20702	UniProtKB:Q9QXH4	IUPHARobj:2454	HGNC:6152	ITGAX
 CL:0002533	immature CD16-positive myeloid dendritic cell	RO:0015016	has low plasma membrane amount	low	False	PR:000001412	CD86 molecule	CD28LG2 (related); CD86 (label)	UniProtKB:P42081	UniProtKB:P42082	IUPHARobj:2745	HGNC:1705	CD86
 CL:0002533	immature CD16-positive myeloid dendritic cell	RO:0015016	has low plasma membrane amount	low	False	PR:000001438	CD80 molecule	CD28LG (related); CD28LG1 (related); CD80 (label)	UniProtKB:P33681	UniProtKB:Q00609	IUPHARobj:2744	HGNC:1700	CD80
@@ -3831,7 +3831,7 @@ CL:0002533	immature CD16-positive myeloid dendritic cell	CL:4030046	lacks_plasma
 CL:0002533	immature CD16-positive myeloid dendritic cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001024	neural cell adhesion molecule 1	CD56 (exact)	UniProtKB:P13591	UniProtKB:P13595	IUPHARobj:2769	HGNC:7656	NCAM1
 CL:0002533	immature CD16-positive myeloid dendritic cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	UniProtKB:P11836	UniProtKB:P19437	PIRSF:PIRSF001995; IUPHARobj:2628	HGNC:7315	MS4A1
 CL:0002533	immature CD16-positive myeloid dendritic cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001865	interleukin-3 receptor class 2 alpha chain	CD123 (exact)	UniProtKB:P26951	UniProtKB:P26952	IUPHARobj:1705	HGNC:6012	IL3RA
-CL:0002533	immature CD16-positive myeloid dendritic cell	RO:0002104	has plasma membrane part	positive	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0002533	immature CD16-positive myeloid dendritic cell	RO:0002104	has plasma membrane part	positive	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0002534	mature CD16-positive myeloid dendritic cell	RO:0015015	has high plasma membrane amount	high	False	PR:000001013	integrin alpha-X	CD11 (exact); CD11C (related); CD11c (exact)	UniProtKB:P20702	UniProtKB:Q9QXH4	IUPHARobj:2454	HGNC:6152	ITGAX
 CL:0002534	mature CD16-positive myeloid dendritic cell	RO:0015015	has high plasma membrane amount	high	False	PR:000001412	CD86 molecule	CD28LG2 (related); CD86 (label)	UniProtKB:P42081	UniProtKB:P42082	IUPHARobj:2745	HGNC:1705	CD86
 CL:0002534	mature CD16-positive myeloid dendritic cell	RO:0015015	has high plasma membrane amount	high	False	PR:000001438	CD80 molecule	CD28LG (related); CD28LG1 (related); CD80 (label)	UniProtKB:P33681	UniProtKB:Q00609	IUPHARobj:2744	HGNC:1700	CD80
@@ -3842,7 +3842,7 @@ CL:0002534	mature CD16-positive myeloid dendritic cell	CL:4030046	lacks_plasma_m
 CL:0002534	mature CD16-positive myeloid dendritic cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001289	membrane-spanning 4-domains subfamily A member 1	CD20 (exact)	UniProtKB:P11836	UniProtKB:P19437	PIRSF:PIRSF001995; IUPHARobj:2628	HGNC:7315	MS4A1
 CL:0002534	mature CD16-positive myeloid dendritic cell	CL:4030046	lacks_plasma_membrane_part	negative	False	PR:000001865	interleukin-3 receptor class 2 alpha chain	CD123 (exact)	UniProtKB:P26951	UniProtKB:P26952	IUPHARobj:1705	HGNC:6012	IL3RA
 CL:0002534	mature CD16-positive myeloid dendritic cell	RO:0002104	has plasma membrane part	positive	False	PR:000001310	CD83 molecule	CD83 (label)	UniProtKB:Q01151	UniProtKB:O88324		HGNC:1703	CD83
-CL:0002534	mature CD16-positive myeloid dendritic cell	RO:0002104	has plasma membrane part	positive	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0002534	mature CD16-positive myeloid dendritic cell	RO:0002104	has plasma membrane part	positive	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0002619	adult endothelial progenitor cell	RO:0002104	has plasma membrane part	positive	False	PR:000001444	cadherin-5	CD144 (exact)	UniProtKB:P33151	UniProtKB:P55284		HGNC:1764	CDH5
 CL:0002619	adult endothelial progenitor cell	RO:0002104	has plasma membrane part	positive	False	PR:000002112	vascular endothelial growth factor receptor 2	CD309 (exact)	UniProtKB:P35968	UniProtKB:P35918	IUPHARobj:1813	HGNC:6307	KDR
 CL:0002619	adult endothelial progenitor cell	RO:0002104	has plasma membrane part	positive	False	PR:000016043	T-cell acute lymphocytic leukemia protein 1		UniProtKB:P17542	UniProtKB:P22091		HGNC:11556	TAL1
@@ -3951,8 +3951,8 @@ CL:0011114	segmented neutrophil of bone marrow	RO:0002104	has plasma membrane pa
 CL:0011114	segmented neutrophil of bone marrow	RO:0002104	has plasma membrane part	positive	False	PR:000001257	C-X-C chemokine receptor type 2	CD182 (exact); CDw128b (exact)	UniProtKB:P25025	UniProtKB:P35343	IUPHARobj:69	HGNC:6027	CXCR2
 CL:0011114	segmented neutrophil of bone marrow	RO:0002104	has plasma membrane part	positive	False	PR:000001332	cell adhesion molecule CEACAM8	CD66b (exact); CD67 (exact)	UniProtKB:P31997			HGNC:1820	CEACAM8
 CL:0011114	segmented neutrophil of bone marrow	RO:0002104	has plasma membrane part	positive	False	PR:000001456	alpha-(1,3)-fucosyltransferase 4	CD15 (exact)	UniProtKB:P22083	UniProtKB:Q11127		HGNC:4015	FUT4
-CL:0011114	segmented neutrophil of bone marrow	RO:0002104	has plasma membrane part	positive	False	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101			
-CL:0011114	segmented neutrophil of bone marrow	RO:0002104	has plasma membrane part	positive	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508			
+CL:0011114	segmented neutrophil of bone marrow	RO:0002104	has plasma membrane part	positive	False	PR:000001479	low affinity immunoglobulin gamma Fc region receptor II	CD32 (broad)		UniProtKB:P08101		HGNC:3616	FCGR2A
+CL:0011114	segmented neutrophil of bone marrow	RO:0002104	has plasma membrane part	positive	False	PR:000001483	low affinity immunoglobulin gamma Fc region receptor III	CD16 (exact)		UniProtKB:P08508		HGNC:3619	FCGR3A
 CL:0011114	segmented neutrophil of bone marrow	RO:0002104	has plasma membrane part	positive	False	PR:000001879	leukosialin	CD43 (related)	UniProtKB:P16150	UniProtKB:P15702	PIRSF:PIRSF001994	HGNC:11249	SPN
 CL:0011114	segmented neutrophil of bone marrow	RO:0002104	has plasma membrane part	positive	False	PR:000001944	transcription factor PU.1		UniProtKB:P17947	UniProtKB:P17433		HGNC:11241	SPI1
 CL:0011114	segmented neutrophil of bone marrow	RO:0002104	has plasma membrane part	positive	False	PR:000001969	urokinase plasminogen activator surface receptor	CD87 (exact)	UniProtKB:Q03405	UniProtKB:P35456	PIRSF:PIRSF002022	HGNC:9053	PLAUR
diff --git a/reports/cl_term_issues.md b/reports/cl_term_issues.md
index e80205a..1a3ec3f 100644
--- a/reports/cl_term_issues.md
+++ b/reports/cl_term_issues.md
@@ -77,6 +77,65 @@ cells.
 | Intermediate monocyte | CL:0002393 | CD14^hi/+ CD16^+/hi CD11c^hi HLA-DR^hi |
 | Non-classical monocyte | CL:0000875 | CD14^lo/− CD16^hi CD11c^hi HLA-DR^+ |
 
+### Natural killer cell missing CD56 marker axiom — CL:0000623
+
+**Repo issue:** not yet filed
+**Reference:** SOULCAP `NK` row ([data/marker_combinations.csv](../data/marker_combinations.csv), regenerate via `uv run soulcap-sync`); literature in [reports/literature/nk_cell_markers.md](literature/nk_cell_markers.md)
+**Status:** Drafted during Milestone 4 candidate mapping work — not yet filed as a repo issue
+
+#### CL:0000623 — "natural killer cell"
+
+| Field | Current | Proposed |
+|-------|---------|----------|
+| Marker axioms | Negative only: CD14, CD19, CD3, CD20 (no positive marker asserted) | Add positive axiom: CD56 (`PR:000001024`, neural cell adhesion molecule 1 / NCAM1) |
+
+**Rationale:** SOULCAP defines its parent "NK" cell type by required phenotypic
+markers `CD45+ CD56+/hi CD127-`, combined with exclusion of CD14/CD33/CD64/
+CD34/CD3/CD19. CD56 positivity is the field-standard defining marker for NK
+cells, not just an incidental one:
+
+> "Natural killer cells are prototypic members of the innate lymphoid cell
+> (ILC) family and characterized in humans by expression of the phenotypic
+> marker CD56 in the absence of CD3."
+> — Van Acker HH et al. 2017 (PMID:28791027; DOI:10.3389/fimmu.2017.00892)
+
+CL already captures this CD56 axiom on **child** terms of natural killer cell
+— `CL:0000938` (CD16-negative, CD56-bright NK cell) and `CL:0000939`
+(CD16-positive, CD56-dim NK cell) both assert a CD56 marker — but the parent
+class `CL:0000623` itself asserts no positive marker at all. This is an
+asymmetry: the defining marker of the general class is only captured on its
+subtypes, not on the class itself.
+
+### Missing human-specific "group 1 innate lymphoid cell" term
+
+**Repo issue:** [#14 Missing human-specific 'group 1 innate lymphoid cell' term (CL)](https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14)
+**Reference:** SOULCAP `ILC1` row ([data/marker_combinations.csv](../data/marker_combinations.csv)); [reports/candidate_cl_mappings.md](candidate_cl_mappings.md#ilc-family--innate-lymphoid-cells)
+**Status:** Filed as a repo issue — not yet filed upstream to `obophenotype/cell-ontology`
+
+**Rationale:** CL distinguishes species-specific variants for two of the
+three canonical ILC groups:
+
+- `CL:0001081` — "group 2 innate lymphoid cell, **human**"
+- `CL:0001078` — "group 3 innate lymphoid cell, **human**"
+
+...but ILC1 only has the species-generic `CL:0001067` "group 1 innate
+lymphoid cell," with no `, human`-suffixed counterpart. Confirmed by direct
+OLS4 search — querying "group 1 innate lymphoid cell, human" returns zero
+results, while the equivalent queries for group 2 and group 3 both return
+their human-specific term. This is an asymmetry in CL's own authoring
+(ILC1/ILC2/ILC3 are described in parallel throughout the literature and
+in CL's own group-3 subtyping, e.g. NKp44-positive/negative human variants
+of group 3), not an intentional omission specific to group 1.
+
+**Proposed fix:** add a "group 1 innate lymphoid cell, human" term to CL,
+following the same pattern as the existing group 2 and group 3 human terms.
+
+**How this was found:** running `soulcap-match` against the SOULCAP `NK`
+marker profile ranks `CL:0000623` only 33rd of 826 CL terms — well below its
+own CD56-bright/dim children — specifically because of this missing axiom,
+despite `CL:0000623` being the conceptually correct parent-level match for
+SOULCAP's unqualified "NK" cell type.
+
 ---
 
 ## Resolved issues
diff --git a/reports/gaps.tsv b/reports/gaps.tsv
new file mode 100644
index 0000000..7670ad8
--- /dev/null
+++ b/reports/gaps.tsv
@@ -0,0 +1,18 @@
+soulcap_abbreviation	soulcap_full_name	gap_type	description	related_cl_ids	evidence	status	repo_issue	date_logged
+NK	Natural Killer Cell	cl_axiom_gap	CL:0000623 asserts only negative exclusion markers (CD14-/CD19-/CD3-/CD20-); the field-standard defining positive marker CD56 is absent from its own axioms, though present on its child terms.	CL:0000623	reports/cl_pro_relationships.md; reports/literature/nk_cell_markers.md; reports/cl_term_issues.md#natural-killer-cell-missing-cd56-marker-axiom--cl0000623	open	(not yet filed)	2026-07-22
+NK1 / NK3	Natural Killer Cell 1 / Natural Killer Cell 3	cl_axiom_gap	CL:0000939 (CD16-positive, CD56-dim NK cell, human) does not distinguish CD57-negative (NK1) from CD57-positive (NK3) substates; both SOULCAP rows currently map to the same CL term at Broad match type.	CL:0000939	reports/candidate_cl_mappings.md#ctnk--nk1--nk3--cytotoxic-natural-killer-cell-cd16-positive	open	(not yet filed)	2026-07-22
+ILC1	Innate Lymphoid Cell 1	cl_axiom_gap	No human-specific "group 1 innate lymphoid cell" CL term exists, unlike group 2 (CL:0001081) and group 3 (CL:0001078); confirmed by direct OLS4 search returning zero hits for the human-qualified query.	CL:0001067	reports/cl_term_issues.md#missing-human-specific-group-1-innate-lymphoid-cell-term	filed_as_issue	https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/14	2026-07-23
+Transitional	Transitional B cell	no_reasonable_cl_match	SOULCAP row has all four marker columns (Required/Ideal exclusion, Required/Ideal phenotypic markers) completely empty in the master sheet — there is no marker definition to match against at all, so no CL candidate can be derived from markers. Distinct from the more specific "T3" (Transitional B cell 3) row, which does have marker data.	(none)	reports/candidate_cl_mappings_batch.tsv (note column); data/marker_combinations.csv	open	(not yet filed)	2026-07-24
+CTNK	Cytotoxic Natural Killer Cell	sheet_data_issue	Sheet's Full Name reads "Cytotoxice Natural Killer Cell" (typo, extra trailing "e"); this broke batch lexical search entirely for the row (zero OLS4 hits). Marker-based match was unaffected. Cannot be fixed in this repo — requires a correction in the Google Sheet master.	CL:0000939	reports/candidate_cl_mappings.md#dc-family--dendritic-cells	open	(not yet filed)	2026-07-22
+pDC	Peripheral Dendritic Cell (as written)	sheet_data_issue	Sheet's Full Name reads "Peripheral Dendritic Cell," but the row's markers (CD123hi, CD303+, low CD33) are the textbook definition of plasmacytoid dendritic cells — likely a wrong word, should probably read "Plasmacytoid." This broke batch lexical search (returned an unrelated "migratory dendritic cell" hit). Cannot be fixed in this repo — requires a correction in the Google Sheet master.	CL:0001058	reports/candidate_cl_mappings.md#dc-family--dendritic-cells	open	(not yet filed)	2026-07-22
+Mono	Monocyte	cl_axiom_gap	CL:0000576 (plain "monocyte") has zero marker axiom rows in cl_pro_relationships.tsv — same parent-class axiom-gap pattern as NK/ILC/cDC/B cell. Match is lexical-only (OAK-verified), not marker-confirmed.	CL:0000576	reports/candidate_cl_mappings.md#monocyte-family; reports/cl_pro_relationships.tsv	open	(not yet filed)	2026-07-24
+CMo / NCMo / IntMo	Classical / Non-classical / Intermediate Monocyte	cl_axiom_gap	CL:0000860/CL:0000875/CL:0002393 assert only CCR2 (CD192) and CX3CR1 status plus lineage negatives — none assert the CD14/CD16 axioms that actually define these three subsets per Ziegler-Heitbrock et al. 2010 (PMID:20628149). Already covered by repo issue #12 (filed upstream as CL#3665) — not a new gap, cited here for context on why these rows can only be matched lexically.	CL:0000860; CL:0000875; CL:0002393	reports/candidate_cl_mappings.md#monocyte-family; https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12	filed_as_issue	https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/12	2026-07-24
+Mono / CMo / NCMo / IntMo	Monocyte family	sheet_data_issue	Required exclusion column reads "CD56- CD19- ([CD123hi]- CD303-) ([CD123hi|CD193-)" for all four rows — the second group is missing a "]" after CD123hi (likely should read "([CD123hi]-|CD193-)", matching the cDC/pDC pattern). Cannot be fixed in this repo — requires a correction in the Google Sheet master.	(none)	reports/candidate_cl_mappings.md#monocyte-family; data/marker_combinations.csv	open	(not yet filed)	2026-07-24
+B cell	B cell	cl_axiom_gap	CL:0000236 (plain "B cell") has zero marker axiom rows in cl_pro_relationships.tsv — same parent-class axiom-gap pattern as NK/ILC/cDC/monocyte. Match is lexical-only (OAK-verified after OLS4 REST search returned zero hits for this exact query), not marker-confirmed.	CL:0000236	reports/candidate_cl_mappings.md#b-cell-parent; reports/cl_pro_relationships.tsv	open	(not yet filed)	2026-07-24
+BDN1 / BDN2 / BDN3 / BDN4	Double Negative B cell 1-4	cl_axiom_gap	SOULCAP defines four "double negative" B cell subsets (DN1-4, the atypical/age-associated B cell scheme from the autoimmunity/aging literature) via CD21/CD11c/CD185/IgE combinations. CL has only the general parent CL:0000981 "double negative memory B cell" with no DN1-4 subtyping; direct searches for "DN1 B cell" through "DN4 B cell" and "atypical memory B cell" returned zero CL hits. All four SOULCAP rows currently collapse to the same Broad match.	CL:0000981	reports/candidate_cl_mappings.md#b-cell-maturation-tree--transitional--mature--naive--double-negative	open	(not yet filed)	2026-07-24
+IgD only	IgD only Memory B cell	cl_axiom_gap	SOULCAP distinguishes IgD+IgM- ("IgD only") from IgD+IgM+ ("Unswitched") memory B cells as two separate populations. No CL term exists for the IgD+IgM- subset — direct searches for "IgD-positive memory B cell" and "IgD only memory B cell" returned zero hits; the only IgD-related term found, CL:0001053 "IgD-negative memory B cell," is the opposite polarity. Left unmapped rather than forced onto a wrong-polarity term.	CL:0001053 (wrong polarity, not used)	reports/candidate_cl_mappings.md#memory-b-cell-tree	open	(not yet filed)	2026-07-24
+CD4+ T cell / CD8+ T cell / CD4+/CD8+ T cell / CD4-/CD8- T cell / CD4+/CD8+ TCRab T cell / CD4-/CD8- TCRab T cell / CD4+ TCRgd T cell / CD8+ TCRgd T cell / CD4+/CD8+ TCRgd	various	cl_axiom_gap	CL organizes CD4/CD8 status primarily under the alpha-beta T cell lineage: no combined alpha-beta+gamma-delta CD4/CD8 terms exist, no clean double-positive alpha-beta term exists, and the only double-negative term found (CL:0002489) is a thymocyte-stage term (wrong tissue for a blood/PBMC panel). All 9 rows Broad-matched to the nearest alpha-beta or gamma-delta parent with this gap noted.	CL:0000624; CL:0000625; CL:0000789; CL:0000084; CL:0000798	reports/candidate_cl_mappings.md#combined-lineage-b-and-double-positivedouble-negative-gaps	open	(not yet filed)	2026-07-24
+CD56+ T cell family (13 rows)	various CD56+ T cell subsets	cl_axiom_gap	SOULCAP crosses CD56 positivity with CD4/CD8/DP/DN status and TCRab/TCRgd lineage (13 variants); CL has only one term at this level (CL:4052055, pending rename to "CD56-positive T cell, human" per issue #13) with no further subdivision. All 13 rows Broad-match to CL:4052055.	CL:4052055	reports/candidate_cl_mappings.md#cd56-t-cell-family; https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/issues/13	open	(not yet filed)	2026-07-24
+Tcm / Tem / Temra (general, no CD4/CD8 split) and all TCRgd-specific Tnaive/Tcm/Tem/Temra rows	various	cl_axiom_gap	CL has no generic central/effector memory T cell term spanning both CD4 and CD8 (only CD4-specific and CD8-specific versions exist), and no gamma-delta-specific differentiation-state terms at all. ~13 rows Broad-matched to the nearest available parent (CL:0000084 T cell, or CL:0000798 gamma-delta T cell) with this gap noted.	CL:0000084; CL:0000798	reports/candidate_cl_mappings.md#naive--central-memory--effector-memory--temra-tree	open	(not yet filed)	2026-07-24
+CD8+ Temra / CD8+ TCRab Temra	CD8+ CD45RA+ effector memory T cell	cl_axiom_gap	CL:4030002 (effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated) appears to be CD4-specific only; no CD8+ counterpart with the same "terminally differentiated" qualifier was found — only the non-TEMRA-specific CL:0000913 (effector memory CD8-positive, alpha-beta T cell). Possible asymmetry in CL's own hierarchy; needs a second look before concluding it's a genuine omission rather than differently-named.	CL:4030002; CL:0000913	reports/candidate_cl_mappings.md#naive--central-memory--effector-memory--temra-tree	open	(not yet filed)	2026-07-24
+(26 rows, various abbreviations)	(no Full Name in sheet)	sheet_data_issue	26 rows in the T cell branch have a completely empty Full Name field, so no name-based match can be attempted (Conv TCRab family, T helper, T cytotoxic, Tfh, CD4 PanT helper/Treg, ConT Treg-like/Tfh-like, Th1/2/9/17-like, Vg9/Vd1/Vd2/Vd3 subsets). Additionally, Th1-like/Th2-like/Th9-like/Th17-like each appear TWICE in the sheet: one copy (parented under "CD4 ConT") has iNKT-style TCRVa24-Ja18/CD1d-a-GalCer markers that look copy-pasted from an unrelated row; the other (no parent) has the correct Th-subset chemokine receptor panel (CD183/CD185/CD194/CD196). Likely a genuine sheet data bug, not two intentional variants. Cannot be fixed here — requires correction in the Google Sheet master.	CL:0000912 (T helper, once named); CL:0000910 (T cytotoxic, once named)	reports/candidate_cl_mappings.md#rows-with-no-full-name-in-the-sheet--not-mapped	open	(not yet filed)	2026-07-24
diff --git a/reports/marker_validation.md b/reports/marker_validation.md
index 77aa1f4..8b37dbd 100644
--- a/reports/marker_validation.md
+++ b/reports/marker_validation.md
@@ -1,11 +1,11 @@
-# Marker Syntax Validation
+# Marker Syntax Validation
 
-> **Auto-generated** on each `soulcap-sync` by the EBNF validator (`soulcap_cl_mapping.marker_syntax`). Do not edit by hand — edit the Google Sheet master and re-sync.
+> **Auto-generated** on each `soulcap-sync` by the EBNF validator (`soulcap_cl_mapping.marker_syntax`). Do not edit by hand — edit the Google Sheet master and re-sync.
 
 - Source: `marker_combinations.csv`
 - Cells checked: **390**
 - Invalid cells: **26**
-- Grammar: [../MARKER_SYNTAX.md](../MARKER_SYNTAX.md) §2
+- Grammar: [../MARKER_SYNTAX.md](../MARKER_SYNTAX.md) §2
 
 ## Invalid cells
 
diff --git a/reports/proposed_marker_fixes.xlsx b/reports/proposed_marker_fixes.xlsx
new file mode 100644
index 0000000..4d6dc52
Binary files /dev/null and b/reports/proposed_marker_fixes.xlsx differ
diff --git a/src/soulcap_cl_mapping/cl_match.py b/src/soulcap_cl_mapping/cl_match.py
index 5ab987c..2ab6c7d 100644
--- a/src/soulcap_cl_mapping/cl_match.py
+++ b/src/soulcap_cl_mapping/cl_match.py
@@ -16,6 +16,21 @@
         --req-pheno "live/ CD45+ CD56+/hi CD127lo/-" \\
         --ideal-pheno "[CD33-|CD64-]" \\
         --parent "NK cell" --subset "CD56bright" --top 8
+
+Batch mode scores every row of ``data/marker_combinations.csv`` (the synced
+SOULCAP sheet) in one pass and writes the top-N candidates per row to a TSV::
+
+    soulcap-match --batch --batch-out reports/candidate_cl_mappings_batch.tsv
+    soulcap-match --batch --top 3 --ready-only
+
+Marker-axiom scoring can only ever suggest CL terms that already have a PR
+marker axiom recorded in ``cl_pro_relationships.tsv`` — many CL terms
+(including some "obvious" parent classes) have none and are structurally
+invisible to it. ``--lexical`` adds a name-based OLS4 CL search per row as a
+second, independent candidate source, and writes an agreement report showing
+where the two approaches concur (higher confidence) or diverge (needs review)::
+
+    soulcap-match --batch --lexical
 """
 
 from __future__ import annotations
@@ -24,13 +39,37 @@
 import csv
 import re
 import sys
+import time
 from pathlib import Path
 
+from soulcap_cl_mapping import ols4_lookup
 from soulcap_cl_mapping.marker_syntax import GATE, _is_qualifier, _split_word, _tokenize
 
 REPO_ROOT = Path(__file__).resolve().parents[2]
 DEFAULT_TSV = REPO_ROOT / "reports" / "cl_pro_relationships.tsv"
+DEFAULT_MARKER_COMBINATIONS = REPO_ROOT / "data" / "marker_combinations.csv"
+DEFAULT_BATCH_OUT = REPO_ROOT / "reports" / "candidate_cl_mappings_batch.tsv"
+DEFAULT_AGREEMENT_OUT = REPO_ROOT / "reports" / "candidate_cl_mappings_agreement.tsv"
 DEFAULT_TOP = 8
+DEFAULT_BATCH_TOP = 3
+
+BATCH_TSV_FIELDS = [
+    "abbreviation",
+    "full_name",
+    "parent",
+    "type_of_match",
+    "existing_cl_id",
+    "rank",
+    "cl_id",
+    "cl_label",
+    "score",
+    "hint_bonus",
+    "matched",
+    "contradictions",
+    "gaps",
+    "disqualified",
+    "note",
+]
 
 # Weight applied to required vs ideal marker columns.
 _REQUIRED_WEIGHT = 2
@@ -58,7 +97,13 @@ def _parse_cd_synonyms(synonym_str: str) -> set[str]:
 
 
 def build_cl_index(rows: list[dict]) -> dict[str, dict]:
-    """Return ``{cl_id: {label, positive: set, negative: set}}`` from TSV rows."""
+    """Return ``{cl_id: {label, positive, negative, high, low}}`` from TSV rows.
+
+    ``high``/``low`` track "has high/low plasma membrane amount" axioms
+    separately from plain ``positive``/``negative`` — both still mean the
+    marker is *expressed* (just at a given level), so they are never treated
+    as equivalent to ``negative`` (marker absent) during scoring.
+    """
     index: dict[str, dict] = {}
     for row in rows:
         cl_id = row["cell"]
@@ -67,13 +112,13 @@ def build_cl_index(rows: list[dict]) -> dict[str, dict]:
                 "label": row["cell_label"],
                 "positive": set(),
                 "negative": set(),
+                "high": set(),
+                "low": set(),
             }
         sense = row.get("sense", "")
         cd_tokens = _parse_cd_synonyms(row.get("cd_synonym", ""))
-        if sense in ("positive", "high"):
-            index[cl_id]["positive"].update(cd_tokens)
-        elif sense in ("negative", "low"):
-            index[cl_id]["negative"].update(cd_tokens)
+        if sense in ("positive", "negative", "high", "low"):
+            index[cl_id][sense].update(cd_tokens)
     return index
 
 
@@ -163,19 +208,183 @@ def extract_signed_markers(expr: str) -> list[tuple[str, str]]:
     return results
 
 
+# A required/ideal marker "clause" for score_cl_terms: either a plain
+# (MARKER, sense) tuple (a single required condition) or a list of such
+# tuples — an OR-group satisfied by *any one* alternative, not all.
+Clause = tuple[str, str] | list[tuple[str, str]]
+
+
+def extract_marker_clauses(expr: str) -> list[Clause]:
+    """Tokenize *expr* into AND-joined clauses, modelling ``|`` as true OR.
+
+    :func:`extract_signed_markers` flattens a ``|``-joined OR-group like
+    ``(CD193+|FceR1a+|HLA-DR-|CD303-)`` into four independently-**required**
+    markers — i.e. it silently turns "at least one of these" into "all of
+    these", which is wrong per MARKER_SYNTAX.md §1.4. That mistranslation
+    made scoring reject candidates that only need to satisfy one
+    alternative: ``CL:0000043`` (mature basophil) never scored as a match
+    for SOULCAP's Basophil profile, because CL doesn't assert *all four*
+    alternatives simultaneously — only some.
+
+    This function fixes that for the common case: a bracket directly
+    containing ``|``-joined atoms that **each already carry their own
+    qualifier** (every real example in the current sheet looks like this)
+    is returned as one clause — a list of alternatives — instead of being
+    flattened. :func:`score_cl_terms` treats such a clause as satisfied if
+    *any* alternative matches, and contradicted only if *every* alternative
+    is actively contradicted.
+
+    Scope: anything more complex — an unqualified member relying on a
+    group-level qualifier, a nested group, or a trailing qualifier negating
+    a compound AND-group (``[HLA-DR+ CD11chi]-``, MARKER_SYNTAX.md §1.6,
+    which needs De Morgan expansion) — falls back to flattening every leaf
+    as independently required, i.e. :func:`extract_signed_markers`'s
+    existing (imperfect but non-regressed) behaviour.
+    """
+    try:
+        tokens = _tokenize(expr)
+    except Exception:  # noqa: BLE001
+        return []
+
+    # frames[d] holds items collected directly at nesting depth d (index 0
+    # = top level). An item is ("leaf", marker, sense) or ("clause", alts).
+    frames: list[list[tuple]] = [[]]
+    saw_pipe: list[bool] = [False]
+
+    i = 0
+    n = len(tokens)
+    while i < n:
+        kind, text = tokens[i]
+        if kind == "WS":
+            i += 1
+        elif kind == "|":
+            saw_pipe[-1] = True
+            i += 1
+        elif kind in ("(", "["):
+            frames.append([])
+            saw_pipe.append(False)
+            i += 1
+        elif kind in (")", "]"):
+            if len(frames) <= 1:
+                # Unbalanced closing bracket with no matching open — nothing
+                # to pop; skip it (and any trailing qualifier) and keep the
+                # top-level frame intact, matching extract_signed_markers's
+                # leniency toward malformed input.
+                i += 1
+                if i < n and tokens[i][0] == "WORD" and _is_qualifier(tokens[i][1]):
+                    i += 1
+                continue
+            items = frames.pop()
+            had_pipe = saw_pipe.pop()
+            i += 1
+            group_qual = None
+            if i < n and tokens[i][0] == "WORD" and _is_qualifier(tokens[i][1]):
+                group_qual = tokens[i][1]
+                i += 1
+            parent = frames[-1]
+            all_leaves = bool(items) and all(kind_ == "leaf" for kind_, *_ in items)
+            simple_group = group_qual is None or _qual_sense(group_qual) == "variable"
+            if had_pipe and all_leaves and simple_group:
+                parent.append(("clause", [(m, s) for _, m, s in items]))
+            else:
+                parent.extend(items)
+        elif kind == "WORD":
+            if text == GATE:
+                i += 1
+                continue
+            try:
+                marker, qual = _split_word(text)
+            except Exception:  # noqa: BLE001
+                i += 1
+                continue
+            if qual:
+                sense = _qual_sense(qual)
+                if sense != "variable":
+                    frames[-1].append(("leaf", marker.upper(), sense))
+            # else: truly unqualified — skip (matches extract_signed_markers)
+            i += 1
+        else:
+            i += 1
+
+    # Unbalanced open brackets: flatten remaining frames into the top level.
+    while len(frames) > 1:
+        items = frames.pop()
+        frames[-1].extend(items)
+
+    clauses: list[Clause] = []
+    for kind_, *rest in frames[0]:
+        if kind_ == "leaf":
+            marker, sense = rest
+            clauses.append((marker, sense))
+        else:
+            clauses.append(rest[0])
+    return clauses
+
+
+def _eval_alternative(
+    marker: str,
+    sense: str,
+    expressed: set[str],
+    absent: set[str],
+    high: set[str],
+    low: set[str],
+) -> tuple[str, str]:
+    """Evaluate one (marker, sense) alternative against a CL term's axioms.
+
+    Returns ``(status, display)`` where status is ``"matched"``,
+    ``"contradicted"``, or ``"gap"``.
+    """
+    in_expressed = marker in expressed
+    in_absent = marker in absent
+    symbol = "+" if sense == "positive" else "-"
+    tag = " (hi)" if marker in high else " (dim)" if marker in low else ""
+    display = f"{marker}{symbol}{tag}"
+    if sense == "positive":
+        if in_expressed:
+            return "matched", display
+        if in_absent:
+            return "contradicted", display
+        return "gap", display
+    if in_absent:
+        return "matched", display
+    if in_expressed:
+        return "contradicted", display
+    return "gap", display
+
+
 # --------------------------------------------------------------------------- #
 # Scoring
 # --------------------------------------------------------------------------- #
 def score_cl_terms(
     cl_index: dict[str, dict],
-    required: list[tuple[str, str]],
-    ideal: list[tuple[str, str]],
+    required: list[Clause],
+    ideal: list[Clause],
     name_hints: set[str] | None = None,
 ) -> list[dict]:
     """Score every CL term and return a list of result dicts, best first.
 
     Each result dict has keys: ``cl_id``, ``label``, ``score``,
-    ``matched``, ``gaps``, ``contradictions``, ``hint_bonus``.
+    ``matched``, ``gaps``, ``contradictions``, ``hint_bonus``,
+    ``disqualified``.
+
+    *required*/*ideal* are lists of :data:`Clause` — each a plain
+    ``(marker, sense)`` tuple (a single required condition) or a ``list`` of
+    such tuples (an OR-group from :func:`extract_marker_clauses`, satisfied
+    by *any one* alternative). A single-alternative clause behaves exactly
+    as a plain tuple always has.
+
+    A contradiction on a *required* clause sets ``disqualified`` — that
+    candidate is sorted below every non-disqualified one regardless of raw
+    score, so shared negative-exclusion markers (common across many
+    unrelated lineages) can no longer pile up enough points to outrank a
+    candidate that outright conflicts with a required marker. For an
+    OR-group clause, "contradiction" only fires when *every* alternative is
+    actively contradicted — if even one alternative is unknown (a gap) or
+    matched, the group as a whole isn't disqualifying. A contradiction on an
+    *ideal* clause is never disqualifying — it still just subtracts
+    ``_IDEAL_WEIGHT`` — since ideal markers are soft signals. Disqualified
+    candidates are kept (not dropped) so a plausible-but-imperfect answer
+    still surfaces when nothing clean exists.
 
     *name_hints* is a set of lowercase words derived from ``--parent`` /
     ``--subset``; each word found in the CL label adds ``_HINT_BONUS`` to
@@ -185,36 +394,51 @@ def score_cl_terms(
     results = []
     for cl_id, entry in cl_index.items():
         pos = entry["positive"]
-        neg = entry["negative"]
+        high = entry.get("high", set())
+        low = entry.get("low", set())
+        expressed = pos | high | low
+        absent = entry["negative"]
         score = 0
         matched: list[str] = []
         gaps: list[str] = []
         contradictions: list[str] = []
-
-        for markers, weight in ((required, _REQUIRED_WEIGHT), (ideal, _IDEAL_WEIGHT)):
-            for marker, sense in markers:
-                in_pos = marker in pos
-                in_neg = marker in neg
-                symbol = "+" if sense == "positive" else "-"
-                display = f"{marker}{symbol}"
-                if sense == "positive":
-                    if in_pos:
-                        score += weight * 2
-                        matched.append(display)
-                    elif in_neg:
-                        score -= weight
-                        contradictions.append(display)
-                    else:
-                        gaps.append(display)
-                else:  # negative
-                    if in_neg:
-                        score += weight * 2
-                        matched.append(display)
-                    elif in_pos:
-                        score -= weight
-                        contradictions.append(display)
-                    else:
-                        gaps.append(display)
+        disqualified = False
+
+        for markers, weight, is_required in (
+            (required, _REQUIRED_WEIGHT, True),
+            (ideal, _IDEAL_WEIGHT, False),
+        ):
+            for clause in markers:
+                alternatives = [clause] if isinstance(clause, tuple) else clause
+                statuses = [
+                    _eval_alternative(m, s, expressed, absent, high, low)
+                    for m, s in alternatives
+                ]
+                matched_display = next(
+                    (d for st, d in statuses if st == "matched"), None
+                )
+                multi = len(alternatives) > 1
+                if matched_display is not None:
+                    score += weight * 2
+                    matched.append(
+                        f"{matched_display} (1 of {len(alternatives)} alt.)"
+                        if multi
+                        else matched_display
+                    )
+                elif all(st == "contradicted" for st, _ in statuses):
+                    score -= weight
+                    disqualified = disqualified or is_required
+                    contradictions.append(
+                        "/".join(d for _, d in statuses) + " (all alt. conflict)"
+                        if multi
+                        else statuses[0][1]
+                    )
+                else:
+                    gaps.append(
+                        "/".join(d for _, d in statuses) + " (no axiom on any alt.)"
+                        if multi
+                        else statuses[0][1]
+                    )
 
         hint_bonus = 0
         if hints:
@@ -233,19 +457,326 @@ def score_cl_terms(
                 "gaps": gaps,
                 "contradictions": contradictions,
                 "hint_bonus": hint_bonus,
+                "disqualified": disqualified,
             }
         )
 
-    results.sort(key=lambda r: r["score"], reverse=True)
+    results.sort(key=lambda r: (r["disqualified"], -r["score"]))
+    return results
+
+
+# --------------------------------------------------------------------------- #
+# Batch mode — score every row of marker_combinations.csv in one pass
+# --------------------------------------------------------------------------- #
+def load_marker_combinations(path: Path) -> list[dict]:
+    """Load the synced SOULCAP ``Marker Combinations`` tab (sheet columns)."""
+    with path.open(encoding="utf-8", newline="") as fh:
+        return list(csv.DictReader(fh))
+
+
+def score_marker_combinations_row(
+    row: dict,
+    cl_index: dict[str, dict],
+    top_n: int = DEFAULT_BATCH_TOP,
+) -> dict:
+    """Score one ``marker_combinations.csv`` row against every CL term.
+
+    Returns a dict with the row's identity columns plus ``candidates`` — the
+    top *top_n* :func:`score_cl_terms` results — or an empty ``candidates``
+    list and a ``note`` explaining why (e.g. no qualified markers found).
+    """
+    abbreviation = row.get("Abbreviation", "").strip()
+    full_name = row.get("Full Name", "").strip()
+    parent = row.get("Parent", "").strip()
+    type_of_match = row.get("Type of Match", "").strip()
+    existing_cl_id = row.get("OLS CL identifier", "").strip()
+
+    identity = {
+        "abbreviation": abbreviation,
+        "full_name": full_name,
+        "parent": parent,
+        "type_of_match": type_of_match,
+        "existing_cl_id": existing_cl_id,
+    }
+
+    required = extract_marker_clauses(
+        row.get("Required exclusion", "")
+    ) + extract_marker_clauses(row.get("Required phenotypic markers", ""))
+    ideal = extract_marker_clauses(
+        row.get("Ideal exclusion", "")
+    ) + extract_marker_clauses(row.get("Ideal phenotypic markers", ""))
+
+    if not required and not ideal:
+        return {**identity, "candidates": [], "note": "no qualified markers found"}
+
+    hints = _hint_words(full_name, parent, abbreviation)
+    scored = score_cl_terms(cl_index, required, ideal, hints)
+    return {**identity, "candidates": scored[:top_n], "note": ""}
+
+
+def run_batch(
+    rows: list[dict],
+    cl_index: dict[str, dict],
+    top_n: int = DEFAULT_BATCH_TOP,
+    ready_only: bool = False,
+) -> list[dict]:
+    """Score every row (optionally filtered to ``Ready for OLS == yes``).
+
+    Rows with no ``Abbreviation``/``Full Name`` at all are skipped (blank
+    sheet rows); every other row is scored, even if no marker could be
+    extracted, so gaps are visible in the output rather than silently
+    dropped.
+    """
+    results = []
+    for row in rows:
+        if ready_only and row.get("Ready for OLS", "").strip().lower() != "yes":
+            continue
+        if (
+            not row.get("Abbreviation", "").strip()
+            and not row.get("Full Name", "").strip()
+        ):
+            continue
+        results.append(score_marker_combinations_row(row, cl_index, top_n))
+    return results
+
+
+def batch_results_to_tsv_rows(results: list[dict]) -> list[dict]:
+    """Flatten batch results into one output row per (cell type, candidate)."""
+    tsv_rows: list[dict] = []
+    for r in results:
+        identity = {
+            k: r[k]
+            for k in (
+                "abbreviation",
+                "full_name",
+                "parent",
+                "type_of_match",
+                "existing_cl_id",
+            )
+        }
+        if not r["candidates"]:
+            tsv_rows.append(
+                {
+                    **identity,
+                    "rank": "",
+                    "cl_id": "",
+                    "cl_label": "",
+                    "score": "",
+                    "hint_bonus": "",
+                    "matched": "",
+                    "contradictions": "",
+                    "gaps": "",
+                    "disqualified": "",
+                    "note": r["note"],
+                }
+            )
+            continue
+        for rank, cand in enumerate(r["candidates"], 1):
+            tsv_rows.append(
+                {
+                    **identity,
+                    "rank": rank,
+                    "cl_id": cand["cl_id"],
+                    "cl_label": cand["label"],
+                    "score": cand["score"],
+                    "hint_bonus": cand["hint_bonus"],
+                    "matched": ", ".join(cand["matched"]),
+                    "contradictions": ", ".join(cand["contradictions"]),
+                    "gaps": ", ".join(cand["gaps"]),
+                    "disqualified": "yes" if cand.get("disqualified") else "no",
+                    "note": "",
+                }
+            )
+    return tsv_rows
+
+
+def write_batch_tsv(path: Path, results: list[dict]) -> None:
+    """Write batch results to *path* as a TSV, one line per candidate."""
+    path.parent.mkdir(parents=True, exist_ok=True)
+    with path.open("w", encoding="utf-8", newline="") as fh:
+        writer = csv.DictWriter(
+            fh, fieldnames=BATCH_TSV_FIELDS, delimiter="\t", lineterminator="\n"
+        )
+        writer.writeheader()
+        writer.writerows(batch_results_to_tsv_rows(results))
+
+
+# --------------------------------------------------------------------------- #
+# Lexical batch mode — name-based CL search via OLS4, as a complement to
+# marker-axiom scoring (which can only rank CL terms already present in
+# cl_pro_relationships.tsv — many CL terms, including "obvious" parent
+# classes, have no marker axiom at all and are invisible to it).
+# --------------------------------------------------------------------------- #
+def _lexical_query_for_row(row: dict[str, str]) -> str:
+    """Pick the best available search text for a row: Full Name, else Abbreviation."""
+    full_name = row.get("Full Name", "").strip()
+    return full_name or row.get("Abbreviation", "").strip()
+
+
+# OLS4's free-text relevance ranking does not reliably put an exact label
+# match first — searching the literal label "Natural Killer Cell" ranks its
+# own exact match (CL:0000623) 23rd, behind dozens of qualified subtype
+# variants that merely share more words. Fetch a wider pool so an exact hit
+# is likely present, then promote it.
+_LEXICAL_FETCH_ROWS = 25
+
+
+def run_lexical_batch(
+    rows: list[dict],
+    top_n: int = DEFAULT_BATCH_TOP,
+    ready_only: bool = False,
+    sleep_between: float = 0.2,
+) -> list[dict]:
+    """Search CL by name (OLS4) for every ``marker_combinations.csv`` row.
+
+    Pure lexical similarity — no marker-conflict checking at all — so it
+    trades the false-positive risk of :func:`run_batch` for a different
+    failure mode (name collisions / no ranking by biological plausibility).
+    Meant to be read alongside marker-based results, not instead of them.
+
+    An exact (case-insensitive) label match is promoted to rank 1 when
+    present in the fetched pool, since OLS4's own relevance order does not
+    do this (see :data:`_LEXICAL_FETCH_ROWS`).
+    """
+    results = []
+    for row in rows:
+        if ready_only and row.get("Ready for OLS", "").strip().lower() != "yes":
+            continue
+        abbreviation = row.get("Abbreviation", "").strip()
+        full_name = row.get("Full Name", "").strip()
+        if not abbreviation and not full_name:
+            continue
+
+        identity = {
+            "abbreviation": abbreviation,
+            "full_name": full_name,
+            "parent": row.get("Parent", "").strip(),
+            "type_of_match": row.get("Type of Match", "").strip(),
+            "existing_cl_id": row.get("OLS CL identifier", "").strip(),
+        }
+
+        query = _lexical_query_for_row(row)
+        if not query:
+            results.append({**identity, "candidates": [], "note": "no name to search"})
+            continue
+
+        if sleep_between > 0:
+            time.sleep(sleep_between)
+        try:
+            hits = ols4_lookup.search(
+                query, ontology="cl", rows=max(top_n, _LEXICAL_FETCH_ROWS)
+            )
+        except Exception as exc:  # noqa: BLE001
+            results.append(
+                {**identity, "candidates": [], "note": f"OLS4 search failed: {exc}"}
+            )
+            continue
+
+        candidates = [
+            {"cl_id": h["obo_id"], "label": h["label"]}
+            for h in hits
+            if h.get("obo_id", "").startswith("CL:")
+        ]
+        query_lower = query.strip().lower()
+        candidates.sort(key=lambda c: c["label"].strip().lower() != query_lower)
+        candidates = candidates[:top_n]
+        note = "" if candidates else "no CL hits"
+        results.append({**identity, "candidates": candidates, "note": note})
     return results
 
 
+def merge_marker_and_lexical(
+    marker_results: list[dict],
+    lexical_results: list[dict],
+) -> list[dict]:
+    """Combine marker-based and lexical-based top-1 picks into an agreement report.
+
+    ``agreement == "yes"`` (both approaches converge on the same CL ID) is a
+    much stronger signal than either approach alone — it means the pick
+    survives both a marker-axiom check and an independent name-similarity
+    check.
+    """
+    lexical_by_key = {r["abbreviation"]: r for r in lexical_results}
+    merged = []
+    for m in marker_results:
+        lex = lexical_by_key.get(m["abbreviation"], {"candidates": [], "note": ""})
+        marker_top = m["candidates"][0] if m["candidates"] else None
+        lexical_top = lex["candidates"][0] if lex["candidates"] else None
+        agreement = bool(
+            marker_top and lexical_top and marker_top["cl_id"] == lexical_top["cl_id"]
+        )
+        merged.append(
+            {
+                "abbreviation": m["abbreviation"],
+                "full_name": m["full_name"],
+                "parent": m["parent"],
+                "type_of_match": m["type_of_match"],
+                "existing_cl_id": m["existing_cl_id"],
+                "marker_cl_id": marker_top["cl_id"] if marker_top else "",
+                "marker_cl_label": marker_top["label"] if marker_top else "",
+                "marker_score": marker_top["score"] if marker_top else "",
+                "marker_conflict": (
+                    ", ".join(marker_top["contradictions"]) if marker_top else ""
+                ),
+                "marker_note": m["note"],
+                "lexical_cl_id": lexical_top["cl_id"] if lexical_top else "",
+                "lexical_cl_label": lexical_top["label"] if lexical_top else "",
+                "lexical_note": lex["note"],
+                "agreement": "yes" if agreement else "no",
+            }
+        )
+    return merged
+
+
+AGREEMENT_TSV_FIELDS = [
+    "abbreviation",
+    "full_name",
+    "parent",
+    "type_of_match",
+    "existing_cl_id",
+    "marker_cl_id",
+    "marker_cl_label",
+    "marker_score",
+    "marker_conflict",
+    "marker_note",
+    "lexical_cl_id",
+    "lexical_cl_label",
+    "lexical_note",
+    "agreement",
+]
+
+
+def write_agreement_tsv(path: Path, merged_rows: list[dict]) -> None:
+    """Write the marker/lexical agreement report to *path* as a TSV."""
+    path.parent.mkdir(parents=True, exist_ok=True)
+    with path.open("w", encoding="utf-8", newline="") as fh:
+        writer = csv.DictWriter(
+            fh, fieldnames=AGREEMENT_TSV_FIELDS, delimiter="\t", lineterminator="\n"
+        )
+        writer.writeheader()
+        writer.writerows(merged_rows)
+
+
 # --------------------------------------------------------------------------- #
 # Formatting
 # --------------------------------------------------------------------------- #
+def _format_clause(clause: Clause) -> str:
+    """Render a Clause for CLI display: ``MARKER+``/``-``, or ``(A+|B-)`` for
+    an OR-group."""
+    if isinstance(clause, tuple):
+        marker, sense = clause
+        return f"{marker}{'+' if sense == 'positive' else '-'}"
+    return "(" + "|".join(_format_clause(alt) for alt in clause) + ")"
+
+
 def format_result(rank: int, r: dict) -> str:
     hint_tag = f" +{r['hint_bonus']} name" if r.get("hint_bonus") else ""
-    lines = [f"  {rank}. {r['cl_id']}  {r['label']}  [score: {r['score']}{hint_tag}]"]
+    dq_tag = (
+        " [DISQUALIFIED: required-marker conflict]" if r.get("disqualified") else ""
+    )
+    lines = [
+        f"  {rank}. {r['cl_id']}  {r['label']}  [score: {r['score']}{hint_tag}]{dq_tag}"
+    ]
     if r["matched"]:
         lines.append(f"     Matched:  {', '.join(r['matched'])}")
     if r["contradictions"]:
@@ -302,8 +833,9 @@ def main(argv: list[str] | None = None) -> int:
     parser.add_argument(
         "--top",
         type=int,
-        default=DEFAULT_TOP,
-        help=f"Number of top results to show (default: {DEFAULT_TOP}).",
+        default=None,
+        help=f"Number of top results per cell type "
+        f"(default: {DEFAULT_TOP}, or {DEFAULT_BATCH_TOP} in --batch mode).",
     )
     parser.add_argument(
         "--tsv",
@@ -311,9 +843,45 @@ def main(argv: list[str] | None = None) -> int:
         default=DEFAULT_TSV,
         help="Path to cl_pro_relationships.tsv.",
     )
+    parser.add_argument(
+        "--batch",
+        nargs="?",
+        const=str(DEFAULT_MARKER_COMBINATIONS),
+        default=None,
+        metavar="PATH",
+        help="Score every row of marker_combinations.csv instead of a single "
+        f"profile (default path: {DEFAULT_MARKER_COMBINATIONS}).",
+    )
+    parser.add_argument(
+        "--batch-out",
+        type=Path,
+        default=DEFAULT_BATCH_OUT,
+        metavar="PATH",
+        help=f"Batch-mode output TSV path (default: {DEFAULT_BATCH_OUT}).",
+    )
+    parser.add_argument(
+        "--ready-only",
+        action="store_true",
+        help="Batch mode: only score rows with 'Ready for OLS' == yes.",
+    )
+    parser.add_argument(
+        "--lexical",
+        action="store_true",
+        help="Batch mode: also run a name-based OLS4 CL search per row and "
+        "write a marker/lexical agreement report (see --agreement-out).",
+    )
+    parser.add_argument(
+        "--agreement-out",
+        type=Path,
+        default=DEFAULT_AGREEMENT_OUT,
+        metavar="PATH",
+        help=f"--lexical output TSV path (default: {DEFAULT_AGREEMENT_OUT}).",
+    )
     args = parser.parse_args(argv)
 
-    if not any([args.req_excl, args.ideal_excl, args.req_pheno, args.ideal_pheno]):
+    if args.batch is None and not any(
+        [args.req_excl, args.ideal_excl, args.req_pheno, args.ideal_pheno]
+    ):
         parser.print_help()
         return 2
 
@@ -324,14 +892,58 @@ def main(argv: list[str] | None = None) -> int:
         )
         return 1
 
+    if args.batch is not None:
+        combos_path = Path(args.batch)
+        if not combos_path.exists():
+            print(
+                f"error: {combos_path} not found — run `soulcap-sync` to regenerate it.",
+                file=sys.stderr,
+            )
+            return 1
+        top_n = args.top if args.top is not None else DEFAULT_BATCH_TOP
+        try:
+            rows = load_tsv(args.tsv)
+            cl_index = build_cl_index(rows)
+            combo_rows = load_marker_combinations(combos_path)
+            results = run_batch(
+                combo_rows, cl_index, top_n=top_n, ready_only=args.ready_only
+            )
+            write_batch_tsv(args.batch_out, results)
+            unscored = sum(1 for r in results if not r["candidates"])
+            print(
+                f"Scored {len(results)} SOULCAP cell types against "
+                f"{len(cl_index)} CL terms ({unscored} had no qualified markers)."
+            )
+            print(f"Wrote {args.batch_out}")
+
+            if args.lexical:
+                print("Running lexical OLS4 search per cell type (rate-limited)...")
+                lexical_results = run_lexical_batch(
+                    combo_rows, top_n=top_n, ready_only=args.ready_only
+                )
+                merged = merge_marker_and_lexical(results, lexical_results)
+                write_agreement_tsv(args.agreement_out, merged)
+                agree = sum(1 for m in merged if m["agreement"] == "yes")
+                print(
+                    f"Marker/lexical agreement: {agree}/{len(merged)} cell types "
+                    "converge on the same CL term."
+                )
+                print(f"Wrote {args.agreement_out}")
+        except Exception as exc:  # noqa: BLE001
+            print(f"error: {exc}", file=sys.stderr)
+            return 1
+        return 0
+
+    top_n = args.top if args.top is not None else DEFAULT_TOP
+
     try:
         rows = load_tsv(args.tsv)
         cl_index = build_cl_index(rows)
 
-        required = extract_signed_markers(args.req_excl) + extract_signed_markers(
+        required = extract_marker_clauses(args.req_excl) + extract_marker_clauses(
             args.req_pheno
         )
-        ideal = extract_signed_markers(args.ideal_excl) + extract_signed_markers(
+        ideal = extract_marker_clauses(args.ideal_excl) + extract_marker_clauses(
             args.ideal_pheno
         )
 
@@ -348,10 +960,8 @@ def main(argv: list[str] | None = None) -> int:
             header_parts.append(f"subset={args.subset!r}")
         header_tag = f" [{', '.join(header_parts)}]" if header_parts else ""
 
-        req_str = ", ".join(
-            f"{m}{'+' if s == 'positive' else '-'}" for m, s in required
-        )
-        ideal_str = ", ".join(f"{m}{'+' if s == 'positive' else '-'}" for m, s in ideal)
+        req_str = ", ".join(_format_clause(c) for c in required)
+        ideal_str = ", ".join(_format_clause(c) for c in ideal)
         print(f"Scoring {len(cl_index)} CL terms{header_tag}:")
         if req_str:
             print(f"  Required : {req_str}")
@@ -362,7 +972,7 @@ def main(argv: list[str] | None = None) -> int:
         print()
 
         scored = score_cl_terms(cl_index, required, ideal, hints)
-        for i, result in enumerate(scored[: args.top], 1):
+        for i, result in enumerate(scored[:top_n], 1):
             print(format_result(i, result))
             print()
 
diff --git a/src/soulcap_cl_mapping/hgnc_map.py b/src/soulcap_cl_mapping/hgnc_map.py
index 54586e9..fa2f6ca 100644
--- a/src/soulcap_cl_mapping/hgnc_map.py
+++ b/src/soulcap_cl_mapping/hgnc_map.py
@@ -36,6 +36,7 @@
 
 REPO_ROOT = Path(__file__).resolve().parents[2]
 DEFAULT_TSV = REPO_ROOT / "reports" / "cl_pro_relationships.tsv"
+DEFAULT_OVERRIDES = REPO_ROOT / "marker_mappings" / "pr_uniprot_overrides.csv"
 
 # Monarch Node Normalizer — accepts repeated ``?curie=`` query parameters and
 # returns a JSON object keyed by input CURIE.
@@ -130,7 +131,32 @@ def strip_isoform_suffix(curie: str) -> str:
     return f"{prefix}:{base}"
 
 
-def collect_pr_mappings(rows: list[dict[str, str]]) -> dict[str, str]:
+def load_overrides(path: Path = DEFAULT_OVERRIDES) -> dict[str, str]:
+    """Load manual PR → UniProt overrides from a CSV file.
+
+    The file must have ``pr`` and ``uniprot_human`` columns.  Missing or
+    non-existent files are silently ignored (returns empty dict).
+
+    Returns
+    -------
+    dict[str, str]
+        ``{"PR:000001479": "UniProtKB:P12318", ...}``
+    """
+    if not path.exists():
+        return {}
+    with open(path, encoding="utf-8", newline="") as fh:
+        reader = csv.DictReader(fh)
+        return {
+            row["pr"]: strip_isoform_suffix(row["uniprot_human"])
+            for row in reader
+            if row.get("pr") and row.get("uniprot_human")
+        }
+
+
+def collect_pr_mappings(
+    rows: list[dict[str, str]],
+    overrides: dict[str, str] | None = None,
+) -> dict[str, str]:
     """Collect unique PR CURIE → first human UniProt CURIE (or "") from the rows.
 
     De-duplicates by PR: the first occurrence wins.  If ``uniprot_human``
@@ -138,6 +164,10 @@ def collect_pr_mappings(rows: list[dict[str, str]]) -> dict[str, str]:
     Isoform suffixes (e.g. ``-1``, ``-2``) are stripped before returning so
     that the Monarch Node Normalizer receives canonical accessions.
 
+    Manual *overrides* (from ``marker_mappings/pr_uniprot_overrides.csv``) are
+    applied after the TSV scan: any PR whose UniProt slot is still empty gets
+    filled from the override table.
+
     Returns
     -------
     dict[str, str]
@@ -151,6 +181,12 @@ def collect_pr_mappings(rows: list[dict[str, str]]) -> dict[str, str]:
         uniprot_human = row.get("uniprot_human", "")
         first_up = uniprot_human.split(";")[0].strip() if uniprot_human else ""
         pr_to_uniprot[pr] = strip_isoform_suffix(first_up) if first_up else ""
+
+    if overrides:
+        for pr, uniprot in overrides.items():
+            if pr in pr_to_uniprot and not pr_to_uniprot[pr]:
+                pr_to_uniprot[pr] = uniprot
+
     return pr_to_uniprot
 
 
@@ -313,6 +349,7 @@ def write_tsv(path: Path, headers: list[str], rows: list[dict[str, str]]) -> Non
 
 def run(
     tsv_path: Path = DEFAULT_TSV,
+    overrides_path: Path = DEFAULT_OVERRIDES,
     dry_run: bool = False,
     session: requests.Session | None = None,
     url: str = MONARCH_URL,
@@ -326,7 +363,13 @@ def run(
     print(f"Reading {tsv_path} ...")
     headers, rows = load_tsv(tsv_path)
 
-    pr_to_uniprot = collect_pr_mappings(rows)
+    overrides = load_overrides(overrides_path)
+    if overrides:
+        print(
+            f"Loaded {len(overrides)} manual UniProt override(s) from {overrides_path}."
+        )
+
+    pr_to_uniprot = collect_pr_mappings(rows, overrides=overrides)
     unique_prs = len(pr_to_uniprot)
     n_with_uniprot = sum(1 for v in pr_to_uniprot.values() if v)
     n_without_uniprot = unique_prs - n_with_uniprot
diff --git a/src/soulcap_cl_mapping/marker_map.py b/src/soulcap_cl_mapping/marker_map.py
index 2117869..6b48550 100644
--- a/src/soulcap_cl_mapping/marker_map.py
+++ b/src/soulcap_cl_mapping/marker_map.py
@@ -324,6 +324,36 @@ def search_ols4_pr(
     return None
 
 
+def fetch_pr_by_uniprot(
+    uniprot_id: str,
+    session: requests.Session,
+    ols4_url: str = OLS4_BASE,
+) -> dict[str, str] | None:
+    """Fetch the PRO term for a human UniProt accession (``PR:<accession>``).
+
+    PRO mints organism-specific protein terms as ``PR:<UniProt accession>``.
+    This is far more reliable than a free-text gene-symbol search against the
+    PR ontology, which tends to surface isoform/receptor noise instead of the
+    plain gene product (e.g. searching "IL4" or "interleukin-4" never
+    surfaces ``PR:P05112`` itself). Returns ``None`` if PRO has no term for
+    this accession, or if *uniprot_id* is empty.
+    """
+    if not uniprot_id:
+        return None
+    iri = f"http://purl.obolibrary.org/obo/PR_{uniprot_id}"
+    resp = session.get(
+        f"{ols4_url}/ontologies/pr/terms", params={"iri": iri}, timeout=30
+    )
+    if resp.status_code == 404:
+        return None
+    resp.raise_for_status()
+    terms = resp.json().get("_embedded", {}).get("terms", [])
+    if not terms:
+        return None
+    term = terms[0]
+    return {"pr_id": term.get("obo_id", ""), "pr_label": term.get("label", "")}
+
+
 def fetch_hgnc_by_symbol(
     symbol: str,
     session: requests.Session,
@@ -547,9 +577,10 @@ def resolve_group4(
     gene_symbol: str,
     session: requests.Session,
     hgnc_url: str = HGNC_REST_URL,
+    ols4_url: str = OLS4_BASE,
     sleep_between: float = 0.2,
 ) -> dict[str, str]:
-    """Resolve a Group 4 cytokine token via the HGNC REST API."""
+    """Resolve a Group 4 cytokine token via the HGNC REST API, then PRO."""
     hgnc_data = fetch_hgnc_by_symbol(gene_symbol, session, hgnc_url=hgnc_url)
 
     if sleep_between > 0:
@@ -561,12 +592,22 @@ def resolve_group4(
     protein_name = hgnc_data["name"] if hgnc_data else ""
     evidence = f"{hgnc_url}/fetch/symbol/{gene_symbol}"
 
+    pr_id = pr_label = ""
+    if uniprot_id:
+        if sleep_between > 0:
+            time.sleep(sleep_between)
+        pr_result = fetch_pr_by_uniprot(uniprot_id, session, ols4_url=ols4_url)
+        if pr_result:
+            pr_id = pr_result["pr_id"]
+            pr_label = pr_result["pr_label"]
+            evidence += f"; {ols4_url}/ontologies/pr/terms?iri=obo:PR_{uniprot_id}"
+
     return {
         "marker_token": token,
         "marker_synonyms": "",
         "source_columns": source_columns,
-        "pro_id": "",
-        "pro_label": "",
+        "pro_id": pr_id,
+        "pro_label": pr_label,
         "uniprot_id": uniprot_id,
         "uniprot_label": protein_name,
         "gene_symbol": approved_symbol,
@@ -586,9 +627,16 @@ def resolve_group6_gene_token(
     extra_notes: str,
     session: requests.Session,
     hgnc_url: str = HGNC_REST_URL,
+    ols4_url: str = OLS4_BASE,
     sleep_between: float = 0.2,
 ) -> dict[str, str]:
-    """Resolve a Group 6 TCR gene token via the HGNC REST API."""
+    """Resolve a Group 6 TCR gene token via the HGNC REST API, then PRO.
+
+    Germline TCR V/D/J gene segments don't all have a PRO entry (PRO tends to
+    catalog the rearranged/assembled chain, not every germline segment), so a
+    PRO hit here is a bonus, not a requirement — a miss keeps confidence at
+    the pre-existing "medium" level established by the gene mapping alone.
+    """
     hgnc_data = fetch_hgnc_by_symbol(imgt_gene, session, hgnc_url=hgnc_url)
 
     if sleep_between > 0:
@@ -596,8 +644,19 @@ def resolve_group6_gene_token(
 
     hgnc_id = hgnc_data["hgnc_id"] if hgnc_data else ""
     approved_symbol = hgnc_data["gene_symbol"] if hgnc_data else imgt_gene
+    uniprot_id = hgnc_data["uniprot_id"] if hgnc_data else ""
     evidence = f"{hgnc_url}/fetch/symbol/{imgt_gene}"
 
+    pr_id = pr_label = ""
+    if uniprot_id:
+        if sleep_between > 0:
+            time.sleep(sleep_between)
+        pr_result = fetch_pr_by_uniprot(uniprot_id, session, ols4_url=ols4_url)
+        if pr_result:
+            pr_id = pr_result["pr_id"]
+            pr_label = pr_result["pr_label"]
+            evidence += f"; {ols4_url}/ontologies/pr/terms?iri=obo:PR_{uniprot_id}"
+
     base_note = f"IMGT nomenclature: {imgt_gene}"
     notes = f"{base_note}; {extra_notes}" if extra_notes else base_note
 
@@ -605,10 +664,10 @@ def resolve_group6_gene_token(
         "marker_token": token,
         "marker_synonyms": "",
         "source_columns": source_columns,
-        "pro_id": "",
-        "pro_label": "",
-        "uniprot_id": "",
-        "uniprot_label": "",
+        "pro_id": pr_id,
+        "pro_label": pr_label,
+        "uniprot_id": uniprot_id,
+        "uniprot_label": pr_label,
         "gene_symbol": approved_symbol,
         "hgnc_id": hgnc_id,
         "ncbi_gene_id": "",
@@ -624,9 +683,10 @@ def resolve_group7_mr1(
     source_columns: str,
     session: requests.Session,
     hgnc_url: str = HGNC_REST_URL,
+    ols4_url: str = OLS4_BASE,
     sleep_between: float = 0.2,
 ) -> dict[str, str]:
-    """Resolve MR1 (MHC-related protein 1) via the HGNC REST API."""
+    """Resolve MR1 (MHC-related protein 1) via the HGNC REST API, then PRO."""
     hgnc_data = fetch_hgnc_by_symbol("MR1", session, hgnc_url=hgnc_url)
 
     if sleep_between > 0:
@@ -638,12 +698,22 @@ def resolve_group7_mr1(
     protein_name = hgnc_data["name"] if hgnc_data else ""
     evidence = f"{hgnc_url}/fetch/symbol/MR1"
 
+    pr_id = pr_label = ""
+    if uniprot_id:
+        if sleep_between > 0:
+            time.sleep(sleep_between)
+        pr_result = fetch_pr_by_uniprot(uniprot_id, session, ols4_url=ols4_url)
+        if pr_result:
+            pr_id = pr_result["pr_id"]
+            pr_label = pr_result["pr_label"]
+            evidence += f"; {ols4_url}/ontologies/pr/terms?iri=obo:PR_{uniprot_id}"
+
     return {
         "marker_token": token,
         "marker_synonyms": "",
         "source_columns": source_columns,
-        "pro_id": "",
-        "pro_label": "",
+        "pro_id": pr_id,
+        "pro_label": pr_label,
         "uniprot_id": uniprot_id,
         "uniprot_label": protein_name,
         "gene_symbol": approved_symbol,
@@ -776,6 +846,7 @@ def run(
                 gene_sym,
                 sess,
                 hgnc_url=hgnc_url,
+                ols4_url=ols4_url,
                 sleep_between=sleep_between,
             )
             output_rows.append(row)
@@ -801,6 +872,7 @@ def run(
                 extra,
                 sess,
                 hgnc_url=hgnc_url,
+                ols4_url=ols4_url,
                 sleep_between=sleep_between,
             )
             output_rows.append(row)
@@ -854,6 +926,7 @@ def run(
                     sc,
                     sess,
                     hgnc_url=hgnc_url,
+                    ols4_url=ols4_url,
                     sleep_between=sleep_between,
                 )
             else:
diff --git a/src/soulcap_cl_mapping/oak_match.py b/src/soulcap_cl_mapping/oak_match.py
new file mode 100644
index 0000000..08ee280
--- /dev/null
+++ b/src/soulcap_cl_mapping/oak_match.py
@@ -0,0 +1,183 @@
+"""Rank candidate CL matches for a SOULCAP cell type label via OAK.
+
+Uses the Ontology Access Kit (OAK) sqlite-backed CL adapter for
+lexical/synonym-based search — the same operation as ``runoak annotate``,
+via OAK's Python API rather than shelling out to the CLI. The default
+``sqlite:obo:cl`` selector downloads and caches a local semantic-sql
+database for CL on first use (~100MB); subsequent runs reuse the cache and
+are fast.
+
+This complements (does not replace) ``soulcap-match --lexical``, which
+queries CL via the OLS4 REST API: OLS4's free-text relevance ranking often
+buries an exact label match behind more-specific subtype variants (see
+``cl_match.py``'s ``_LEXICAL_FETCH_ROWS`` docstring), whereas OAK's
+search-optimised sqlite backend ranks exact label/synonym matches first by
+construction — no post-hoc promotion needed.
+
+Usage::
+
+    soulcap-oak-match "Natural Killer Cell"
+    soulcap-oak-match "NK cell" --top 5
+"""
+
+from __future__ import annotations
+
+import argparse
+import sys
+from typing import Any, Protocol
+
+from oaklib import get_adapter
+from oaklib.datamodels.search import SearchConfiguration, SearchProperty
+
+DEFAULT_SELECTOR = "sqlite:obo:cl"
+DEFAULT_TOP = 5
+CL_PREFIX = "CL:"
+
+_MATCH_TYPE_RANK = {
+    "exact_label": 0,
+    "exact_synonym": 1,
+    "partial": 2,
+}
+
+
+class SearchAdapter(Protocol):
+    """The subset of OAK's adapter interface this module relies on."""
+
+    def basic_search(self, query: str, config: Any = None) -> Any: ...
+    def label(self, curie: str) -> str | None: ...
+    def entity_aliases(self, curie: str) -> Any: ...
+
+
+# --------------------------------------------------------------------------- #
+# Adapter
+# --------------------------------------------------------------------------- #
+def get_cl_adapter(selector: str = DEFAULT_SELECTOR) -> SearchAdapter:
+    """Return an OAK adapter for CL.
+
+    The default ``sqlite:obo:cl`` selector downloads/caches a local
+    semantic-sql database (~100MB) on first use — this can take a while the
+    first time it's called, but is instant afterwards.
+    """
+    return get_adapter(selector)  # type: ignore[no-any-return]
+
+
+# --------------------------------------------------------------------------- #
+# Matching
+# --------------------------------------------------------------------------- #
+def _match_type(label: str, aliases: list[str], query: str) -> str:
+    q = query.strip().lower()
+    if label.strip().lower() == q:
+        return "exact_label"
+    if any(a.strip().lower() == q for a in aliases):
+        return "exact_synonym"
+    return "partial"
+
+
+def rank_candidates(
+    query: str,
+    adapter: SearchAdapter,
+    top_n: int = DEFAULT_TOP,
+) -> list[dict]:
+    """Return ranked CL candidates for *query*, best match first.
+
+    Each result dict has keys: ``cl_id``, ``label``, ``match_type``
+    (``"exact_label"`` / ``"exact_synonym"`` / ``"partial"``), and
+    ``matched_alias`` (the synonym that matched, if any).
+
+    Tries an exact-ish (non-partial) label+synonym search first, since it
+    ranks true matches cleanly; only falls back to a partial/substring
+    search if that finds nothing, because partial search is noisy — it
+    matches unrelated terms that merely share a substring (e.g. searching
+    "basophil" with partial matching on surfaces "gonadotroph" and
+    "thyrotroph" via unrelated shared synonym fragments).
+    """
+    cfg = SearchConfiguration(properties=[SearchProperty.LABEL, SearchProperty.ALIAS])
+    hits = [
+        c for c in adapter.basic_search(query, config=cfg) if c.startswith(CL_PREFIX)
+    ]
+
+    if not hits:
+        cfg_partial = SearchConfiguration(
+            properties=[SearchProperty.LABEL, SearchProperty.ALIAS], is_partial=True
+        )
+        hits = [
+            c
+            for c in adapter.basic_search(query, config=cfg_partial)
+            if c.startswith(CL_PREFIX)
+        ]
+
+    results = []
+    query_lower = query.strip().lower()
+    for cl_id in hits:
+        label = adapter.label(cl_id) or ""
+        aliases = list(adapter.entity_aliases(cl_id) or [])
+        matched_alias = next(
+            (a for a in aliases if a.strip().lower() == query_lower), ""
+        )
+        results.append(
+            {
+                "cl_id": cl_id,
+                "label": label,
+                "match_type": _match_type(label, aliases, query),
+                "matched_alias": matched_alias,
+            }
+        )
+
+    results.sort(key=lambda r: _MATCH_TYPE_RANK.get(r["match_type"], 3))
+    return results[:top_n]
+
+
+# --------------------------------------------------------------------------- #
+# Formatting
+# --------------------------------------------------------------------------- #
+def format_candidate(rank: int, r: dict) -> str:
+    alias_note = f" (via synonym {r['matched_alias']!r})" if r["matched_alias"] else ""
+    return f"  {rank}. {r['cl_id']}  {r['label']}  [{r['match_type']}]{alias_note}"
+
+
+# --------------------------------------------------------------------------- #
+# CLI
+# --------------------------------------------------------------------------- #
+def main(argv: list[str] | None = None) -> int:
+    parser = argparse.ArgumentParser(
+        prog="soulcap-oak-match",
+        description="Rank candidate CL matches for a SOULCAP cell type label "
+        "via OAK lexical/synonym search.",
+    )
+    parser.add_argument(
+        "label",
+        help="SOULCAP cell type label to search for, e.g. 'Natural Killer Cell'.",
+    )
+    parser.add_argument(
+        "--top",
+        type=int,
+        default=DEFAULT_TOP,
+        help=f"Number of candidates to show (default: {DEFAULT_TOP}).",
+    )
+    parser.add_argument(
+        "--adapter",
+        default=DEFAULT_SELECTOR,
+        metavar="SELECTOR",
+        help=f"OAK adapter selector (default: {DEFAULT_SELECTOR}).",
+    )
+    args = parser.parse_args(argv)
+
+    try:
+        adapter = get_cl_adapter(args.adapter)
+        results = rank_candidates(args.label, adapter, top_n=args.top)
+    except Exception as exc:  # noqa: BLE001
+        print(f"error: {exc}", file=sys.stderr)
+        return 1
+
+    if not results:
+        print(f"No CL candidates found for {args.label!r}.", file=sys.stderr)
+        return 1
+
+    print(f"Top {len(results)} CL candidate(s) for {args.label!r}:\n")
+    for i, r in enumerate(results, 1):
+        print(format_candidate(i, r))
+    return 0
+
+
+if __name__ == "__main__":
+    raise SystemExit(main())
diff --git a/src/soulcap_cl_mapping/sssom_export.py b/src/soulcap_cl_mapping/sssom_export.py
new file mode 100644
index 0000000..17c8c14
--- /dev/null
+++ b/src/soulcap_cl_mapping/sssom_export.py
@@ -0,0 +1,903 @@
+"""Export curated SOULCAP -> CL mappings as an SSSOM TSV file.
+
+This is deliberately a separate, later step from proposing candidates:
+`soulcap-match --batch [--lexical]` produces *unreviewed draft* candidates
+(`reports/candidate_cl_mappings_batch.tsv` / `_agreement.tsv`); a human then
+reviews them and writes the accepted decision into
+`reports/candidate_cl_mappings.md` (prose, with rationale) *and* into the
+small curated table in ``CURATED_MAPPINGS`` below (structured, one row per
+decision). This module turns that curated table into a proper SSSOM
+mapping set — the standard machine-readable format for cross-resource
+mappings — rather than writing OWL axioms directly.
+
+SSSOM is the final output here, deliberately. Converting these mappings
+into OWL logical axioms (``owl:equivalentClass``/``rdfs:subClassOf``) and
+merging them into CL would assert them as *true*, which isn't this repo's
+call to make unilaterally — that's for CL maintainers to accept, after
+review, not something to automate. (An earlier version of this module did
+exactly that as a CI check; removed after review feedback that it
+overstepped.)
+
+Confidence and the ``comment`` field are **not** hand-typed per row — they
+are derived automatically from whether CL directly asserts the matched
+marker axiom(s) (``asserted`` column in ``cl_pro_relationships.tsv``) or
+only has them by inference, or has no marker axiom for the term at all. This
+directly captures the distinction the mapping was built to make explicit:
+"this match is only supported by inferred markers, not confirmed ones" is a
+real, different confidence tier from "CL directly asserts this."
+
+Usage::
+
+    soulcap-sssom                          # -> reports/candidate_cl_mappings.sssom.tsv
+    soulcap-sssom --out other/path.sssom.tsv
+"""
+
+from __future__ import annotations
+
+import argparse
+import csv
+import sys
+from pathlib import Path
+
+import pandas as pd
+from curies import Converter
+from sssom.util import MappingSetDataFrame
+from sssom.writers import write_table
+
+REPO_ROOT = Path(__file__).resolve().parents[2]
+DEFAULT_TSV = REPO_ROOT / "reports" / "cl_pro_relationships.tsv"
+DEFAULT_OUT = REPO_ROOT / "reports" / "candidate_cl_mappings.sssom.tsv"
+
+MAPPING_SET_ID = "https://github.com/Cellular-Semantics/SOULCAP_CL_Mapping/reports/candidate_cl_mappings.sssom.tsv"
+LICENSE = "https://creativecommons.org/licenses/by/4.0/"
+CURIE_MAP = {
+    "SOULCAP": "https://soulcap.org/cell_type/",
+    "CL": "http://purl.obolibrary.org/obo/CL_",
+    "skos": "http://www.w3.org/2004/02/skos/core#",
+    "semapv": "https://w3id.org/semapv/vocab/",
+}
+
+# --------------------------------------------------------------------------- #
+# The curated decision table — one row per reviewed SOULCAP -> CL mapping.
+# Kept in sync by hand with reports/candidate_cl_mappings.md; each entry here
+# should correspond to a "## <SOULCAP>" section (or table row) there.
+# --------------------------------------------------------------------------- #
+CURATED_MAPPINGS: list[dict] = [
+    {
+        "abbreviation": "NK",
+        "subject_label": "Natural Killer Cell",
+        "cl_id": "CL:0000623",
+        "cl_label": "natural killer cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "CL:0000623 asserts only negative exclusion markers "
+        "(CD14-/CD19-/CD3-/CD20-); the defining positive CD56 marker is "
+        "absent — a documented CL gap (cl_term_issues.md), not confirmed here.",
+    },
+    {
+        "abbreviation": "NK2",
+        "subject_label": "Natural Killer Cell 2",
+        "cl_id": "CL:0000938",
+        "cl_label": "CD16-negative, CD56-bright natural killer cell, human",
+        "match_type": "Exact",
+    },
+    {
+        "abbreviation": "CTNK",
+        "subject_label": "Cytotoxic Natural Killer Cell",
+        "cl_id": "CL:0000939",
+        "cl_label": "CD16-positive, CD56-dim natural killer cell, human",
+        "match_type": "Exact",
+    },
+    {
+        "abbreviation": "NK1",
+        "subject_label": "Natural Killer Cell 1",
+        "cl_id": "CL:0000939",
+        "cl_label": "CD16-positive, CD56-dim natural killer cell, human",
+        "match_type": "Broad",
+        "note": "CL does not distinguish CD57 status within this subtype.",
+    },
+    {
+        "abbreviation": "NK3",
+        "subject_label": "Natural Killer Cell 3",
+        "cl_id": "CL:0000939",
+        "cl_label": "CD16-positive, CD56-dim natural killer cell, human",
+        "match_type": "Broad",
+        "note": "CL does not distinguish CD57 status within this subtype.",
+    },
+    {
+        "abbreviation": "ILCp",
+        "subject_label": "Innate Lymphoid Cell Progenitor",
+        "cl_id": "CL:0001074",
+        "cl_label": "CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human",
+        "match_type": "Broad",
+        "uncertain": True,
+        "note": "SOULCAP profile does not test CD34; CL:0001073 (CD34-negative) "
+        "and CL:0001082 (immature innate lymphoid cell) are equally "
+        "marker-consistent alternatives, not ruled out.",
+    },
+    {
+        "abbreviation": "ILC",
+        "subject_label": "Innate Lymphoid Cell",
+        "cl_id": "CL:0001065",
+        "cl_label": "innate lymphoid cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Marker-axiom scoring found nothing useful for this lineage; "
+        "match is lexical/name-based only, not CL-marker-supported.",
+    },
+    {
+        "abbreviation": "ILC1",
+        "subject_label": "Innate Lymphoid Cell 1",
+        "cl_id": "CL:0001067",
+        "cl_label": "group 1 innate lymphoid cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Marker-axiom scoring found nothing useful for this lineage; "
+        "match is lexical/name-based only. No human-specific CL term exists "
+        "for group 1 (unlike group 2/3); filed as CL gap, repo issue #14.",
+    },
+    {
+        "abbreviation": "ILC2",
+        "subject_label": "Innate Lymphoid Cell 2",
+        "cl_id": "CL:0001081",
+        "cl_label": "group 2 innate lymphoid cell, human",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Marker-axiom scoring found nothing useful for this lineage; "
+        "match is lexical/name-based only, confirmed by direct OLS4 lookup "
+        "after the batch lexical search had picked the wrong-species term.",
+    },
+    {
+        "abbreviation": "ILC3",
+        "subject_label": "Innate Lymphoid Cell 3",
+        "cl_id": "CL:0001078",
+        "cl_label": "group 3 innate lymphoid cell, human",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Marker-axiom scoring found nothing useful for this lineage; "
+        "match is lexical/name-based only, confirmed by direct OLS4 lookup "
+        "after the batch lexical search had over-specified to an NKp44+ subtype.",
+    },
+    {
+        "abbreviation": "cDC",
+        "subject_label": "Conventional Dendritic Cell",
+        "cl_id": "CL:0000990",
+        "cl_label": "conventional dendritic cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Marker-axiom scoring returned unrelated candidates; match is "
+        "lexical/name-based only.",
+    },
+    {
+        "abbreviation": "cDC1",
+        "subject_label": "Conventional Dendritic Cell 1",
+        "cl_id": "CL:0002394",
+        "cl_label": "CD141-positive myeloid dendritic cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Marker-axiom scoring returned unrelated candidates; match is "
+        "lexical/name-based only, confirmed by direct OLS4 lookup after the "
+        "batch lexical search had wrongly assigned cDC1 the same term as cDC2.",
+    },
+    {
+        "abbreviation": "cDC2",
+        "subject_label": "Conventional Dendritic Cell 2",
+        "cl_id": "CL:0002399",
+        "cl_label": "CD1c-positive myeloid dendritic cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Marker-axiom scoring returned unrelated candidates; match is "
+        "lexical/name-based only, confirmed correct by cross-check against cDC1.",
+    },
+    {
+        "abbreviation": "pDC",
+        "subject_label": "Plasmacytoid Dendritic Cell",
+        "cl_id": "CL:0001058",
+        "cl_label": "plasmacytoid dendritic cell, human",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Marker-axiom scoring returned unrelated candidates; match is "
+        "lexical/name-based only. Sheet's Full Name reads 'Peripheral Dendritic "
+        "Cell' (likely a typo for 'Plasmacytoid'); not yet corrected at source.",
+    },
+    {
+        "abbreviation": "Basophil (PBMC)",
+        "subject_label": "Basophil",
+        "cl_id": "CL:0000043",
+        "cl_label": "mature basophil",
+        "match_type": "Exact",
+    },
+    {
+        "abbreviation": "Basophil (WB)",
+        "subject_label": "Basophil",
+        "cl_id": "CL:0000043",
+        "cl_label": "mature basophil",
+        "match_type": "Exact",
+    },
+    {
+        "abbreviation": "Mono",
+        "subject_label": "Monocyte",
+        "cl_id": "CL:0000576",
+        "cl_label": "monocyte",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified exact label match (OLS4 was timing out); "
+        "CL:0000576 has no marker axioms recorded at all.",
+    },
+    {
+        "abbreviation": "CMo",
+        "subject_label": "Classical Monocyte",
+        "cl_id": "CL:0000860",
+        "cl_label": "classical monocyte",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified exact label match. CL:0000860 asserts only CCR2 "
+        "(CD192) and lineage negatives, not the CD14/CD16 axioms that "
+        "actually define this subset — already tracked by repo issue #12.",
+    },
+    {
+        "abbreviation": "NCMo",
+        "subject_label": "Non-classical Monocyte",
+        "cl_id": "CL:0000875",
+        "cl_label": "non-classical monocyte",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified exact label match. CL:0000875 asserts only "
+        "CX3CR1 and lineage negatives, not the CD14/CD16 axioms that "
+        "actually define this subset — already tracked by repo issue #12.",
+    },
+    {
+        "abbreviation": "IntMo",
+        "subject_label": "Intermediate Monocyte",
+        "cl_id": "CL:0002393",
+        "cl_label": "intermediate monocyte",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified exact label match. CL:0002393 asserts only CCR2 "
+        "(CD192, negative) and lineage negatives, not the CD14/CD16 axioms "
+        "that actually define this subset — already tracked by repo issue #12.",
+    },
+    {
+        "abbreviation": "Neutrophil",
+        "subject_label": "Neutrophil",
+        "cl_id": "CL:0000775",
+        "cl_label": "neutrophil",
+        "match_type": "Exact",
+    },
+    {
+        "abbreviation": "Eosinophil",
+        "subject_label": "Eosinophil",
+        "cl_id": "CL:0000771",
+        "cl_label": "eosinophil",
+        "match_type": "Exact",
+        "note": "CD193 (CCR3) positive is directly asserted (not inferred) on "
+        "CL:0000771, precisely matching SOULCAP's defining CD193+ requirement "
+        "— one of the stronger marker-confirmed matches in this set.",
+    },
+    {
+        "abbreviation": "B cell",
+        "subject_label": "B cell",
+        "cl_id": "CL:0000236",
+        "cl_label": "B cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OLS4 REST search returned zero hits for this exact query; "
+        "found instead via OAK. CL:0000236 has no marker axioms recorded.",
+    },
+    {
+        "abbreviation": "ASC",
+        "subject_label": "Antibody Secreting Cell",
+        "cl_id": "CL:0000946",
+        "cl_label": "antibody secreting cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Lexical match; marker scoring found nothing useful (mouse "
+        "B220-nomenclature terms scored highest instead).",
+    },
+    {
+        "abbreviation": "PB",
+        "subject_label": "Plasmablast",
+        "cl_id": "CL:0000980",
+        "cl_label": "plasmablast",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Lexical match; marker scoring found nothing useful.",
+    },
+    {
+        "abbreviation": "PC",
+        "subject_label": "Plasma Cell",
+        "cl_id": "CL:0000786",
+        "cl_label": "plasma cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Lexical match; marker scoring found nothing useful.",
+    },
+    {
+        "abbreviation": "T1/T2 B",
+        "subject_label": "Transitonal B cell 1 and 2",
+        "cl_id": "CL:0000818",
+        "cl_label": "transitional stage B cell",
+        "match_type": "Broad",
+        "evidence_override": "no_marker_axiom",
+        "note": "SOULCAP combines T1+T2 into one gate; CL keeps CL:0000958 (T1) "
+        "and CL:0000959 (T2) separate under this parent term. Sheet's Full "
+        "Name has a typo ('Transitonal').",
+    },
+    {
+        "abbreviation": "Mature B",
+        "subject_label": "Mature B cell",
+        "cl_id": "CL:0000785",
+        "cl_label": "mature B cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Lexical match; marker scoring found nothing useful.",
+    },
+    {
+        "abbreviation": "T3",
+        "subject_label": "Transitional B cell 3",
+        "cl_id": "CL:0000960",
+        "cl_label": "T3 B cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Lexical match; marker scoring found nothing useful.",
+    },
+    {
+        "abbreviation": "Naive",
+        "subject_label": "Naive B cell",
+        "cl_id": "CL:0000788",
+        "cl_label": "naive B cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Lexical match; marker scoring found nothing useful.",
+    },
+    {
+        "abbreviation": "BDN",
+        "subject_label": "Double Negative B cells",
+        "cl_id": "CL:0000981",
+        "cl_label": "double negative memory B cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified; batch lexical search had wrongly picked "
+        "CL:0002103, an IgG-positive-specific child term.",
+    },
+    {
+        "abbreviation": "BDN1",
+        "subject_label": "Double Negative B cell 1",
+        "cl_id": "CL:0000981",
+        "cl_label": "double negative memory B cell",
+        "match_type": "Broad",
+        "evidence_override": "no_marker_axiom",
+        "note": "No CL term exists for the DN1-4 atypical B cell scheme "
+        "(CD21/CD11c/CD185/IgE-based); collapses to the general parent.",
+    },
+    {
+        "abbreviation": "BDN2",
+        "subject_label": "Double Negative B cell 2",
+        "cl_id": "CL:0000981",
+        "cl_label": "double negative memory B cell",
+        "match_type": "Broad",
+        "evidence_override": "no_marker_axiom",
+        "note": "No CL term exists for the DN1-4 atypical B cell scheme "
+        "(CD21/CD11c/CD185/IgE-based); collapses to the general parent.",
+    },
+    {
+        "abbreviation": "BDN3",
+        "subject_label": "Double Negative B cell 3",
+        "cl_id": "CL:0000981",
+        "cl_label": "double negative memory B cell",
+        "match_type": "Broad",
+        "evidence_override": "no_marker_axiom",
+        "note": "No CL term exists for the DN1-4 atypical B cell scheme "
+        "(CD21/CD11c/CD185/IgE-based); collapses to the general parent.",
+    },
+    {
+        "abbreviation": "BDN4",
+        "subject_label": "Double Negative B cell 4",
+        "cl_id": "CL:0000981",
+        "cl_label": "double negative memory B cell",
+        "match_type": "Broad",
+        "evidence_override": "no_marker_axiom",
+        "note": "No CL term exists for the DN1-4 atypical B cell scheme "
+        "(CD21/CD11c/CD185/IgE-based); collapses to the general parent.",
+    },
+    {
+        "abbreviation": "Bmem",
+        "subject_label": "Memory B cell",
+        "cl_id": "CL:0000787",
+        "cl_label": "memory B cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Lexical match; marker scoring found nothing useful.",
+    },
+    {
+        "abbreviation": "Unswitched",
+        "subject_label": "Unswitched Memory B cell",
+        "cl_id": "CL:0000970",
+        "cl_label": "unswitched memory B cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Lexical match, OAK-confirmed.",
+    },
+    {
+        "abbreviation": "IgM only",
+        "subject_label": "IgM-only Memory B cell",
+        "cl_id": "CL:0000971",
+        "cl_label": "IgM memory B cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Lexical match, OAK-confirmed.",
+    },
+    {
+        "abbreviation": "Switched",
+        "subject_label": "Switched Memory B cell",
+        "cl_id": "CL:0000972",
+        "cl_label": "class switched memory B cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified; batch lexical search had wrongly picked "
+        "CL:0002117, an IgG-negative-specific child term (too narrow for the "
+        "general Switched parent, which shouldn't exclude any Ig class).",
+    },
+    {
+        "abbreviation": "IgA",
+        "subject_label": "IgA-Class Switched B cell",
+        "cl_id": "CL:0000973",
+        "cl_label": "IgA memory B cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Lexical match, OAK-confirmed.",
+    },
+    {
+        "abbreviation": "IgG",
+        "subject_label": "IgG-Class Switched B cell",
+        "cl_id": "CL:0000979",
+        "cl_label": "IgG memory B cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified; batch lexical search had wrongly picked "
+        "CL:0002117 'IgG-negative class switched memory B cell' — the "
+        "opposite polarity of what this row defines.",
+    },
+    {
+        "abbreviation": "IgE",
+        "subject_label": "IgE-Class Switched B cell",
+        "cl_id": "CL:0000948",
+        "cl_label": "IgE memory B cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Lexical match, OAK-confirmed.",
+    },
+    # -- T cell tree: core lineage --------------------------------------
+    {
+        "abbreviation": "T cell",
+        "subject_label": "T lymphocyte",
+        "cl_id": "CL:0000084",
+        "cl_label": "T cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified; marker scoring returned unrelated myeloid terms.",
+    },
+    {
+        "abbreviation": "TCRab",
+        "subject_label": "alpha/beta T cell",
+        "cl_id": "CL:0000789",
+        "cl_label": "alpha-beta T cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified; marker scoring returned unrelated myeloid terms.",
+    },
+    {
+        "abbreviation": "TCRgd",
+        "subject_label": "gamma/delta T cell",
+        "cl_id": "CL:0000798",
+        "cl_label": "gamma-delta T cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified; marker scoring returned unrelated myeloid terms.",
+    },
+    {
+        "abbreviation": "iNKT",
+        "subject_label": "Invariant Natural Killer T cell",
+        "cl_id": "CL:0000814",
+        "cl_label": "mature NK T cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified. Same term flagged in repo issue #13 for a "
+        "rename to 'iNKT cell' (filed upstream, awaiting review) — mapping "
+        "is correct either way.",
+    },
+    {
+        "abbreviation": "MAIT",
+        "subject_label": "Mucosal-associated Invariant T cell",
+        "cl_id": "CL:0000940",
+        "cl_label": "mucosal-associated invariant T cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "Lexical match, OAK-confirmed.",
+    },
+    {
+        "abbreviation": "CD4+ TCRab T cell",
+        "subject_label": "CD4+ alpha/beta T cell",
+        "cl_id": "CL:0000624",
+        "cl_label": "CD4-positive, alpha-beta T cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified.",
+    },
+    {
+        "abbreviation": "CD8+ TCRab T cell",
+        "subject_label": "CD8+ alpha/beta T cell",
+        "cl_id": "CL:0000625",
+        "cl_label": "CD8-positive, alpha-beta T cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified.",
+    },
+    {
+        "abbreviation": "CD4-/CD8- TCRgd",
+        "subject_label": "CD4-/CD8- gamma/delta T cell",
+        "cl_id": "CL:0000803",
+        "cl_label": "CD4-negative, CD8-negative gamma-delta T cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified; double-negative is the classical gamma-delta "
+        "T cell phenotype.",
+    },
+    # -- T cell tree: combined-lineage (ab+gd) and DP/DN gaps -----------
+    {
+        "abbreviation": "CD4+ T cell",
+        "subject_label": "alpha/beta and gamma/delta CD4+ T cells",
+        "cl_id": "CL:0000624",
+        "cl_label": "CD4-positive, alpha-beta T cell",
+        "match_type": "Broad",
+        "evidence_override": "no_marker_axiom",
+        "note": "CL has no combined alpha-beta+gamma-delta CD4+ term; "
+        "alpha-beta dominates the CD4+ compartment.",
+    },
+    {
+        "abbreviation": "CD8+ T cell",
+        "subject_label": "alpha/beta and gamma/delta CD8+ T cells",
+        "cl_id": "CL:0000625",
+        "cl_label": "CD8-positive, alpha-beta T cell",
+        "match_type": "Broad",
+        "evidence_override": "no_marker_axiom",
+        "note": "Same reasoning as CD4+ T cell.",
+    },
+    {
+        "abbreviation": "CD4+/CD8+ T cell",
+        "subject_label": "alpha/beta and gamma/delta CD4+ and CD8+ T cells",
+        "cl_id": "CL:0000789",
+        "cl_label": "alpha-beta T cell",
+        "match_type": "Broad",
+        "uncertain": True,
+        "evidence_override": "no_marker_axiom",
+        "note": "No CD4+CD8+ double-positive CL term found at all; peripheral "
+        "DP T cells are themselves biologically unusual.",
+    },
+    {
+        "abbreviation": "CD4-/CD8- T cell",
+        "subject_label": "alpha/beta and gamma/delta CD4- and CD8- T cells",
+        "cl_id": "CL:0000084",
+        "cl_label": "T cell",
+        "match_type": "Broad",
+        "uncertain": True,
+        "evidence_override": "no_marker_axiom",
+        "note": "No peripheral (non-thymic) double-negative term spanning "
+        "both TCR types; only a thymocyte-stage term exists (wrong tissue).",
+    },
+    {
+        "abbreviation": "CD4+/CD8+ TCRab T cell",
+        "subject_label": "CD4+ and CD8+ alpha/beta T cell",
+        "cl_id": "CL:0000789",
+        "cl_label": "alpha-beta T cell",
+        "match_type": "Broad",
+        "uncertain": True,
+        "evidence_override": "no_marker_axiom",
+        "note": "No CD4+CD8+ double-positive alpha-beta term found.",
+    },
+    {
+        "abbreviation": "CD4-/CD8- TCRab T cell",
+        "subject_label": "CD4- and CD8- alpha/beta T cell",
+        "cl_id": "CL:0000789",
+        "cl_label": "alpha-beta T cell",
+        "match_type": "Broad",
+        "uncertain": True,
+        "evidence_override": "no_marker_axiom",
+        "note": "Only CL:0002489 'double negative thymocyte' found — wrong "
+        "tissue/maturity stage for a blood/PBMC panel.",
+    },
+    {
+        "abbreviation": "CD4+ TCRgd T cell",
+        "subject_label": "CD4+ gamma/delta T cell",
+        "cl_id": "CL:0000798",
+        "cl_label": "gamma-delta T cell",
+        "match_type": "Broad",
+        "uncertain": True,
+        "evidence_override": "no_marker_axiom",
+        "note": "CD4+ gamma-delta T cells are atypical/rare; no CL term found.",
+    },
+    {
+        "abbreviation": "CD8+ TCRgd T cell",
+        "subject_label": "CD8+ gamma/delta T cell",
+        "cl_id": "CL:0000798",
+        "cl_label": "gamma-delta T cell",
+        "match_type": "Broad",
+        "uncertain": True,
+        "evidence_override": "no_marker_axiom",
+        "note": "No CD8+-specific gamma-delta CL term found.",
+    },
+    {
+        "abbreviation": "CD4+/CD8+ TCRgd",
+        "subject_label": "CD4+/CD8+ gamma/delta T cell",
+        "cl_id": "CL:0000798",
+        "cl_label": "gamma-delta T cell",
+        "match_type": "Broad",
+        "uncertain": True,
+        "evidence_override": "no_marker_axiom",
+        "note": "No CD4+CD8+ double-positive gamma-delta term found.",
+    },
+    # -- T cell tree: CD56+ family (all 13 -> one CL term) --------------
+    *[
+        {
+            "abbreviation": ab,
+            "subject_label": label,
+            "cl_id": "CL:4052055",
+            "cl_label": "mature NK T cell, human",
+            "match_type": "Broad",
+            "evidence_override": "no_marker_axiom",
+            "note": "Same term flagged in repo issue #13 for a rename to "
+            "'CD56-positive T cell, human' (filed upstream, awaiting review). "
+            "CL doesn't subdivide this by CD4/CD8/TCR-type the way SOULCAP's "
+            "panel does, so all 13 CD56+ T cell rows collapse to this one term.",
+        }
+        for ab, label in [
+            ("CD56+ T cell", "CD56+ T cell"),
+            ("CD56+ CD4 T cell", "CD56+ CD4 T cell"),
+            ("CD56+ CD8 T cell", "CD56+ CD8 T cell"),
+            ("CD56+ TCRab", "CD56+ alpha/beta T cell"),
+            ("CD56+ CD4+ TCRab", "CD56+ CD4+ alpha/beta T cell"),
+            ("CD56+ CD8+ TCRab", "CD56+ CD8+ alpha/beta T cell"),
+            ("CD56+ CD4+/CD8+ TCRab", "CD56+ CD4+/CD8+ alpha/beta T cell"),
+            ("CD56+ CD4-/CD8- TCRab", "CD56+ CD4-/CD8- alpha/beta T cell"),
+            ("CD56+ TCRgd", "CD56+ gamma/delta T cell"),
+            ("CD56+ CD4+ TCRgd", "CD56+ CD4+ gamma/delta T cell"),
+            ("CD56+ CD8+ TCRgd", "CD56+ CD8+ gamma/delta T cell"),
+            ("CD56+ CD4+/CD8+ TCRgd", "CD56+ CD4+/CD8+ gamma/delta T cell"),
+            ("CD56+ CD8-/CD8- TCRgd", "CD56+ CD8-/CD8- gamma/delta T cell"),
+        ]
+    ],
+    # -- T cell tree: naive / Tcm / Tem / Temra x CD4/CD8, alpha-beta ---
+    {
+        "abbreviation": "Tnaive",
+        "subject_label": "Naive alpha/beta and gamma/delta T cell",
+        "cl_id": "CL:0000898",
+        "cl_label": "naive T cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified; the one generic (non-CD4/CD8-split) "
+        "differentiation-state term that does exist in CL.",
+    },
+    {
+        "abbreviation": "CD4+ TCRab Tnaive",
+        "subject_label": "CD4+ naive alpha/beta T cell",
+        "cl_id": "CL:0000895",
+        "cl_label": "naive thymus-derived CD4-positive, alpha-beta T cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified.",
+    },
+    {
+        "abbreviation": "CD8+ TCRab Tnaive",
+        "subject_label": "CD8+ naive alpha/beta T cell",
+        "cl_id": "CL:0000900",
+        "cl_label": "naive thymus-derived CD8-positive, alpha-beta T cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified.",
+    },
+    {
+        "abbreviation": "CD4+ TCRab Tcm",
+        "subject_label": "CD4+ central memory alpha/beta T cell",
+        "cl_id": "CL:0000904",
+        "cl_label": "central memory CD4-positive, alpha-beta T cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified.",
+    },
+    {
+        "abbreviation": "CD8+ TCRab Tcm",
+        "subject_label": "CD8+ central memory alpha/beta T cell",
+        "cl_id": "CL:0000907",
+        "cl_label": "central memory CD8-positive, alpha-beta T cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified.",
+    },
+    {
+        "abbreviation": "CD4+ TCRab Tem",
+        "subject_label": "CD4+ effector memory alpha/beta T cell",
+        "cl_id": "CL:0000905",
+        "cl_label": "effector memory CD4-positive, alpha-beta T cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified.",
+    },
+    {
+        "abbreviation": "CD8+ TCRab Tem",
+        "subject_label": "CD8+ effector memory alpha/beta T cell",
+        "cl_id": "CL:0000913",
+        "cl_label": "effector memory CD8-positive, alpha-beta T cell",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified.",
+    },
+    {
+        "abbreviation": "CD4+ TCRab Temra",
+        "subject_label": "CD4+ CD45RA+ effector memory alpha/beta T cell",
+        "cl_id": "CL:4030002",
+        "cl_label": "effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated",
+        "match_type": "Exact",
+        "evidence_override": "no_marker_axiom",
+        "note": "OAK-verified. No CD8+-specific counterpart with this "
+        "'terminally differentiated' qualifier was found — see gaps.tsv.",
+    },
+]
+
+_PREDICATE_BY_MATCH_TYPE = {
+    "Exact": "skos:exactMatch",
+    "Broad": "skos:broadMatch",
+}
+
+_EVIDENCE_CONFIDENCE = {
+    ("confirmed", "Exact"): 0.9,
+    ("confirmed", "Broad"): 0.75,
+    ("inferred_only", "Exact"): 0.6,
+    ("inferred_only", "Broad"): 0.5,
+    ("no_marker_axiom", "Exact"): 0.55,
+    ("no_marker_axiom", "Broad"): 0.4,
+}
+
+_EVIDENCE_COMMENT = {
+    "confirmed": "Supported by directly-asserted CL marker axiom(s).",
+    "inferred_only": "Supported only by inferred (not directly asserted) CL "
+    "marker axioms — treat with lower confidence than a directly-asserted match.",
+    "no_marker_axiom": "CL has no marker axiom recorded for this term; match is "
+    "based on lexical/name correspondence (and literature where available), "
+    "not confirmed CL markers.",
+}
+
+UNCERTAIN_CONFIDENCE_CAP = 0.3
+
+
+# --------------------------------------------------------------------------- #
+# Evidence classification from cl_pro_relationships.tsv
+# --------------------------------------------------------------------------- #
+def load_assertion_status(tsv_path: Path = DEFAULT_TSV) -> dict[str, bool]:
+    """Return ``{cl_id: has_any_directly_asserted_axiom}`` from the CL-PRO TSV.
+
+    A CL ID missing from the returned dict has *no* marker axiom rows at all
+    in the TSV (i.e. ``cl_pro_relationships`` has nothing on it).
+    """
+    status: dict[str, bool] = {}
+    with tsv_path.open(encoding="utf-8", newline="") as fh:
+        reader = csv.DictReader(fh, delimiter="\t")
+        for row in reader:
+            cl_id = row.get("cell", "")
+            if not cl_id:
+                continue
+            asserted = row.get("asserted", "").strip().lower() == "true"
+            status[cl_id] = status.get(cl_id, False) or asserted
+    return status
+
+
+def classify_evidence(cl_id: str, assertion_status: dict[str, bool]) -> str:
+    """Classify a CL ID's marker-axiom support: confirmed / inferred_only / no_marker_axiom."""
+    if cl_id not in assertion_status:
+        return "no_marker_axiom"
+    return "confirmed" if assertion_status[cl_id] else "inferred_only"
+
+
+# --------------------------------------------------------------------------- #
+# Build mapping rows
+# --------------------------------------------------------------------------- #
+def build_mapping_rows(
+    curated: list[dict],
+    assertion_status: dict[str, bool],
+) -> list[dict]:
+    """Turn ``CURATED_MAPPINGS``-shaped entries into SSSOM mapping rows."""
+    object_counts: dict[str, int] = {}
+    for entry in curated:
+        object_counts[entry["cl_id"]] = object_counts.get(entry["cl_id"], 0) + 1
+
+    rows = []
+    for entry in curated:
+        match_type = entry["match_type"]
+        evidence = entry.get("evidence_override") or classify_evidence(
+            entry["cl_id"], assertion_status
+        )
+        confidence = _EVIDENCE_CONFIDENCE[(evidence, match_type)]
+        comment = _EVIDENCE_COMMENT[evidence]
+        if entry.get("uncertain"):
+            confidence = min(confidence, UNCERTAIN_CONFIDENCE_CAP)
+        if entry.get("note"):
+            comment = f"{entry['note']} {comment}"
+
+        rows.append(
+            {
+                "subject_id": f"SOULCAP:{entry['abbreviation'].replace(' ', '_')}",
+                "subject_label": entry["subject_label"],
+                "predicate_id": _PREDICATE_BY_MATCH_TYPE[match_type],
+                "object_id": entry["cl_id"],
+                "object_label": entry["cl_label"],
+                "mapping_justification": "semapv:ManualMappingCuration",
+                "confidence": confidence,
+                "mapping_cardinality": "n:1"
+                if object_counts[entry["cl_id"]] > 1
+                else "1:1",
+                "comment": comment,
+                "mapping_tool": "soulcap-match + soulcap-cl-matching skill",
+            }
+        )
+    return rows
+
+
+# --------------------------------------------------------------------------- #
+# SSSOM writing
+# --------------------------------------------------------------------------- #
+def write_sssom(path: Path, rows: list[dict]) -> None:
+    """Write *rows* (as produced by :func:`build_mapping_rows`) to *path* as SSSOM TSV."""
+    df = pd.DataFrame(rows)
+    converter = Converter.from_prefix_map(CURIE_MAP)
+    msdf = MappingSetDataFrame(
+        df=df,
+        converter=converter,
+        metadata={"mapping_set_id": MAPPING_SET_ID, "license": LICENSE},
+    )
+    path.parent.mkdir(parents=True, exist_ok=True)
+    with path.open("w", encoding="utf-8", newline="") as fh:
+        write_table(msdf, fh)
+
+
+# --------------------------------------------------------------------------- #
+# CLI
+# --------------------------------------------------------------------------- #
+def main(argv: list[str] | None = None) -> int:
+    parser = argparse.ArgumentParser(
+        prog="soulcap-sssom",
+        description="Export the curated SOULCAP -> CL mapping table as SSSOM TSV.",
+    )
+    parser.add_argument(
+        "--tsv",
+        type=Path,
+        default=DEFAULT_TSV,
+        help="Path to cl_pro_relationships.tsv.",
+    )
+    parser.add_argument(
+        "--out",
+        type=Path,
+        default=DEFAULT_OUT,
+        help=f"Output path (default: {DEFAULT_OUT}).",
+    )
+    args = parser.parse_args(argv)
+
+    if not args.tsv.exists():
+        print(
+            f"error: {args.tsv} not found — run `soulcap-cl-pro` to regenerate it.",
+            file=sys.stderr,
+        )
+        return 1
+
+    try:
+        assertion_status = load_assertion_status(args.tsv)
+        rows = build_mapping_rows(CURATED_MAPPINGS, assertion_status)
+        write_sssom(args.out, rows)
+    except Exception as exc:  # noqa: BLE001
+        print(f"error: {exc}", file=sys.stderr)
+        return 1
+
+    print(f"Wrote {len(rows)} mappings to {args.out}")
+    return 0
+
+
+if __name__ == "__main__":
+    raise SystemExit(main())
diff --git a/tests/test_cl_match.py b/tests/test_cl_match.py
index a9da592..d72d3b2 100644
--- a/tests/test_cl_match.py
+++ b/tests/test_cl_match.py
@@ -4,6 +4,7 @@
 
 import csv
 from pathlib import Path
+from unittest.mock import patch
 
 from soulcap_cl_mapping import cl_match as cm
 
@@ -129,6 +130,96 @@ def test_extract_invalid_expr():
     assert cm.extract_signed_markers("((((") == []
 
 
+# --------------------------------------------------------------------------- #
+# extract_marker_clauses
+# --------------------------------------------------------------------------- #
+def test_clauses_single_markers_stay_plain_tuples():
+    result = cm.extract_marker_clauses("CD14- CD3- CD19-")
+    assert result == [("CD14", "negative"), ("CD3", "negative"), ("CD19", "negative")]
+    for clause in result:
+        assert isinstance(clause, tuple)
+
+
+def test_clauses_or_group_of_qualified_atoms_becomes_one_clause():
+    # Regression: this must NOT flatten to 4 independently-required markers.
+    result = cm.extract_marker_clauses("(CD193+|FceR1a+|HLA-DR-|CD303-)")
+    assert len(result) == 1
+    clause = result[0]
+    assert isinstance(clause, list)
+    assert set(clause) == {
+        ("CD193", "positive"),
+        ("FCER1A", "positive"),
+        ("HLA-DR", "negative"),
+        ("CD303", "negative"),
+    }
+
+
+def test_clauses_and_of_plain_and_or_group():
+    result = cm.extract_marker_clauses("CD45+ (CD33+|CD123+) CD3-")
+    assert ("CD45", "positive") in result
+    assert ("CD3", "negative") in result
+    or_clauses = [c for c in result if isinstance(c, list)]
+    assert len(or_clauses) == 1
+    assert set(or_clauses[0]) == {("CD33", "positive"), ("CD123", "positive")}
+
+
+def test_clauses_multiple_or_groups_stay_separate():
+    result = cm.extract_marker_clauses("(CD33+|CD123+) (CD193+|FceR1a+)")
+    or_clauses = [c for c in result if isinstance(c, list)]
+    assert len(or_clauses) == 2
+
+
+def test_clauses_group_without_pipe_flattens_like_old_behaviour():
+    # No "|" seen directly in the bracket -> not an OR-group, falls back to
+    # flattening (matches extract_signed_markers's existing behaviour).
+    result = cm.extract_marker_clauses("(CD14- CD33-)")
+    assert ("CD14", "negative") in result
+    assert ("CD33", "negative") in result
+    assert not any(isinstance(c, list) for c in result)
+
+
+def test_clauses_bracket_group_qualifier_falls_back_no_regression():
+    # [HLA-DR+ CD11chi]- (De Morgan negation of a compound group) is out of
+    # scope — must fall back to flattening each leaf with its own qualifier,
+    # same as extract_signed_markers, not crash or misbehave.
+    result = cm.extract_marker_clauses("[HLA-DR+ CD11chi]-")
+    assert ("HLA-DR", "positive") in result
+    assert ("CD11C", "positive") in result
+    assert not any(isinstance(c, list) for c in result)
+
+
+def test_clauses_skips_gate():
+    result = cm.extract_marker_clauses("live/ CD45+ CD56+")
+    plain = {c for c in result if isinstance(c, tuple)}
+    assert ("CD45", "positive") in plain
+    assert ("CD56", "positive") in plain
+
+
+def test_clauses_empty_expr():
+    assert cm.extract_marker_clauses("") == []
+
+
+def test_clauses_invalid_expr_does_not_raise():
+    assert cm.extract_marker_clauses("((((") == []
+
+
+def test_clauses_unbalanced_closing_bracket_does_not_raise():
+    assert cm.extract_marker_clauses("CD45+)") is not None
+
+
+def test_clauses_nested_or_degrades_gracefully_no_crash():
+    # Nested OR-in-OR is beyond the modelled scope; must not crash or lose
+    # data silently — some reasonable clause set should still come back.
+    result = cm.extract_marker_clauses("((CD14+|CD33+)|CD3-)")
+    all_markers = set()
+    for c in result:
+        if isinstance(c, tuple):
+            all_markers.add(c[0])
+        else:
+            all_markers.update(m for m, _ in c)
+    assert {"CD14", "CD33", "CD3"} <= all_markers
+
+
 # --------------------------------------------------------------------------- #
 # build_cl_index
 # --------------------------------------------------------------------------- #
@@ -158,6 +249,18 @@ def test_build_cl_index_ignores_other_senses(tmp_path):
     assert index["CL:1"]["negative"] == set()
 
 
+def test_build_cl_index_tracks_high_and_low_separately(tmp_path):
+    rows = [
+        _row("CL:0000939", "CD56-dim NK cell", "low", "CD56 (exact)"),
+        _row("CL:0000938", "CD56-bright NK cell", "high", "CD56 (exact)"),
+    ]
+    index = cm.build_cl_index(rows)
+    assert index["CL:0000939"]["low"] == {"CD56"}
+    assert index["CL:0000939"]["negative"] == set()
+    assert index["CL:0000938"]["high"] == {"CD56"}
+    assert index["CL:0000938"]["negative"] == set()
+
+
 # --------------------------------------------------------------------------- #
 # _hint_words
 # --------------------------------------------------------------------------- #
@@ -258,6 +361,274 @@ def test_score_sorted_best_first():
     assert results[0]["cl_id"] == "CL:0000623"
 
 
+def test_score_required_contradiction_disqualifies_despite_higher_raw_score():
+    # Regression: a candidate with a required-marker conflict (e.g. "T cell"
+    # scored against a term that actually says CD3-negative) must not outrank
+    # a clean candidate just because it also matches several shared
+    # exclusion markers. Mirrors the real "T cell" -> hematopoietic stem
+    # cell / "Basophil" -> basophilic myelocyte false positives.
+    index = {
+        "CL:CONFLICTED": {
+            # Matches CD14-/CD19- (shared negatives) but explicitly says CD3+
+            # while the query wants CD3- -> contradiction on a required marker.
+            "label": "conflicted term",
+            "positive": {"CD3"},
+            "negative": {"CD14", "CD19"},
+        },
+        "CL:CLEAN": {
+            # Matches only one required marker, no conflicts at all.
+            "label": "clean term",
+            "positive": set(),
+            "negative": {"CD14"},
+        },
+    }
+    required = [("CD14", "negative"), ("CD19", "negative"), ("CD3", "negative")]
+    results = cm.score_cl_terms(index, required, [])
+
+    conflicted = next(r for r in results if r["cl_id"] == "CL:CONFLICTED")
+    clean = next(r for r in results if r["cl_id"] == "CL:CLEAN")
+
+    # Raw score check: conflicted term still scores higher on paper...
+    assert conflicted["score"] > clean["score"]
+    assert conflicted["disqualified"] is True
+    assert clean["disqualified"] is False
+    # ...but disqualification must place it below the clean candidate anyway.
+    assert results.index(clean) < results.index(conflicted)
+    assert results[0]["cl_id"] == "CL:CLEAN"
+
+
+def test_score_ideal_contradiction_not_disqualifying():
+    index = {
+        "CL:A": {
+            "label": "a term",
+            "positive": {"CD57"},  # conflicts with an ideal CD57- request
+            "negative": set(),
+        }
+    }
+    ideal = [("CD57", "negative")]
+    results = cm.score_cl_terms(index, [], ideal)
+    assert results[0]["contradictions"] == ["CD57-"]
+    assert results[0]["disqualified"] is False
+
+
+def test_score_all_disqualified_still_returns_best_available():
+    index = {
+        "CL:WORSE": {
+            "label": "worse conflicted",
+            "positive": {"CD3"},
+            "negative": set(),
+        },
+        "CL:BETTER": {
+            "label": "better conflicted",
+            "positive": {"CD3"},
+            "negative": {"CD14"},
+        },
+    }
+    required = [("CD3", "negative"), ("CD14", "negative")]
+    results = cm.score_cl_terms(index, required, [])
+    assert all(r["disqualified"] for r in results)
+    assert results[0]["cl_id"] == "CL:BETTER"  # best among the disqualified
+
+
+def test_format_result_shows_disqualified_tag():
+    r = {
+        "cl_id": "CL:1",
+        "label": "foo",
+        "score": 5,
+        "matched": [],
+        "gaps": [],
+        "contradictions": ["CD3-"],
+        "hint_bonus": 0,
+        "disqualified": True,
+    }
+    out = cm.format_result(1, r)
+    assert "DISQUALIFIED" in out
+
+
+# --------------------------------------------------------------------------- #
+# score_cl_terms — OR-group clauses
+# --------------------------------------------------------------------------- #
+def test_score_or_group_matches_via_any_alternative():
+    # CL only asserts one of the four alternatives (CD193 high) — the group
+    # must still be satisfied, not scored as three gaps and no credit.
+    index = {
+        "CL:X": {
+            "label": "x",
+            "positive": set(),
+            "negative": set(),
+            "high": {"CD193"},
+            "low": set(),
+        }
+    }
+    or_group = [
+        ("CD193", "positive"),
+        ("FCER1A", "positive"),
+        ("HLA-DR", "negative"),
+        ("CD303", "negative"),
+    ]
+    results = cm.score_cl_terms(index, [or_group], [])
+    r = results[0]
+    assert r["disqualified"] is False
+    assert r["contradictions"] == []
+    assert any("CD193+" in m for m in r["matched"])
+    assert r["score"] > 0
+
+
+def test_score_or_group_all_contradicted_disqualifies():
+    index = {
+        "CL:X": {
+            "label": "x",
+            "positive": {"HLA-DR", "CD303"},  # contradicts the negative alts
+            "negative": {"CD193", "FCER1A"},  # contradicts the positive alts
+            "high": set(),
+            "low": set(),
+        }
+    }
+    or_group = [
+        ("CD193", "positive"),
+        ("FCER1A", "positive"),
+        ("HLA-DR", "negative"),
+        ("CD303", "negative"),
+    ]
+    results = cm.score_cl_terms(index, [or_group], [])
+    r = results[0]
+    assert r["disqualified"] is True
+    assert r["matched"] == []
+    assert r["contradictions"] != []
+
+
+def test_score_or_group_gap_when_no_info_on_any_alternative():
+    index = {"CL:X": {"label": "x", "positive": set(), "negative": set()}}
+    or_group = [("CD193", "positive"), ("FCER1A", "positive")]
+    results = cm.score_cl_terms(index, [or_group], [])
+    r = results[0]
+    assert r["disqualified"] is False
+    assert r["matched"] == []
+    assert r["contradictions"] == []
+    assert len(r["gaps"]) == 1
+
+
+def test_score_or_group_not_disqualified_when_one_alt_is_unknown():
+    # One alternative contradicted, one alternative unknown (gap), none
+    # matched -> not a confirmed "all contradicted", so not disqualifying.
+    index = {
+        "CL:X": {
+            "label": "x",
+            "positive": set(),
+            "negative": {"CD193"},  # contradicts CD193+
+            "high": set(),
+            "low": set(),
+        }
+    }
+    or_group = [("CD193", "positive"), ("FCER1A", "positive")]  # FCER1A unknown
+    results = cm.score_cl_terms(index, [or_group], [])
+    r = results[0]
+    assert r["disqualified"] is False
+
+
+def test_score_or_group_single_alternative_behaves_like_plain_tuple():
+    index = {
+        "CL:A": {"label": "a", "positive": set(), "negative": {"CD3"}},
+    }
+    from_list = cm.score_cl_terms(index, [[("CD3", "negative")]], [])[0]
+    from_tuple = cm.score_cl_terms(index, [("CD3", "negative")], [])[0]
+    assert from_list["score"] == from_tuple["score"]
+    assert from_list["matched"] == from_tuple["matched"]
+    assert from_list["disqualified"] == from_tuple["disqualified"]
+
+
+def test_score_basophil_or_group_matches_mature_basophil_end_to_end():
+    # Reproduces the real bug: CL:0000043 mature basophil was never a
+    # candidate for SOULCAP's Basophil profile because the OR-group
+    # (CD193+|FceR1a+|HLA-DR-|CD303-) was flattened into four required
+    # markers. With clause-aware extraction + scoring it must now match.
+    index = {
+        "CL:0000043": {
+            "label": "mature basophil",
+            "positive": set(),
+            "negative": {"CD19", "CD3", "CD8"},
+            "high": {"CD193", "FCER1A", "CD123"},
+            "low": set(),
+        }
+    }
+    required = (
+        cm.extract_marker_clauses("CD3-")
+        + cm.extract_marker_clauses("(CD33+|CD123+)")
+        + cm.extract_marker_clauses("(CD193+|FceR1a+|HLA-DR-|CD303-)")
+    )
+    results = cm.score_cl_terms(index, required, [])
+    r = results[0]
+    assert r["disqualified"] is False
+    assert r["score"] > 0
+    # CD3- and the CD123+ alternative and the CD193+ alternative all matched
+    assert any("CD3-" in m for m in r["matched"])
+    assert any("CD123+" in m for m in r["matched"])
+    assert any("CD193+" in m for m in r["matched"])
+
+
+def test_score_low_marker_matches_positive_query():
+    # Regression: CD56 "dim" (low) means the marker IS expressed, just at a
+    # low level — it must NOT be treated as a contradiction of a plain "+"
+    # query (CL:0000939 CD16+CD56dim NK cells vs SOULCAP CD56+ profiles).
+    index = {
+        "CL:0000939": {
+            "label": "CD16-positive, CD56-dim natural killer cell, human",
+            "positive": set(),
+            "negative": set(),
+            "high": set(),
+            "low": {"CD56"},
+        }
+    }
+    required = [("CD56", "positive")]
+    results = cm.score_cl_terms(index, required, [])
+    r = results[0]
+    assert r["contradictions"] == []
+    assert any(m.startswith("CD56+") for m in r["matched"])
+    assert r["score"] > 0
+
+
+def test_score_high_marker_matches_positive_query():
+    index = {
+        "CL:0000938": {
+            "label": "CD16-negative, CD56-bright natural killer cell, human",
+            "positive": set(),
+            "negative": set(),
+            "high": {"CD56"},
+            "low": set(),
+        }
+    }
+    required = [("CD56", "positive")]
+    results = cm.score_cl_terms(index, required, [])
+    r = results[0]
+    assert r["contradictions"] == []
+    assert any(m.startswith("CD56+") for m in r["matched"])
+
+
+def test_score_low_marker_conflicts_with_negative_query():
+    # A marker expressed at a low level still contradicts a "-" (absent) query.
+    index = {
+        "CL:0000939": {
+            "label": "CD56-dim NK cell",
+            "positive": set(),
+            "negative": set(),
+            "high": set(),
+            "low": {"CD56"},
+        }
+    }
+    required = [("CD56", "negative")]
+    results = cm.score_cl_terms(index, required, [])
+    r = results[0]
+    assert "CD56-" in r["contradictions"][0] or r["contradictions"] != []
+
+
+def test_score_missing_high_low_keys_defaults_empty():
+    # Index entries built without high/low keys (e.g. hand-built in older
+    # code/tests) must not raise.
+    index = _simple_index()
+    results = cm.score_cl_terms(index, [("CD56", "positive")], [])
+    assert results  # no KeyError
+
+
 def test_score_hint_bonus_applied():
     index = _simple_index()
     # "killer" appears in "natural killer cell" but not in "CD4+ T cell"
@@ -374,3 +745,585 @@ def test_main_all_columns(tmp_path, capsys):
     out = capsys.readouterr().out
     assert "Required" in out
     assert "Ideal" in out
+
+
+# --------------------------------------------------------------------------- #
+# Batch mode
+# --------------------------------------------------------------------------- #
+_COMBOS_FIELDS = [
+    "Ready for OLS",
+    "WB or PBMC",
+    "Parent",
+    "Abbreviation",
+    "Full Name",
+    "synonym",
+    "Type of Match",
+    "OLS CL identifier",
+    "Required exclusion",
+    "Ideal exclusion",
+    "Required phenotypic markers",
+    "Ideal phenotypic markers",
+    "Nomenclature Notes",
+    "CL Mapping Notes",
+]
+
+
+def _combos_row(**overrides: str) -> dict:
+    row = dict.fromkeys(_COMBOS_FIELDS, "")
+    row.update(overrides)
+    return row
+
+
+def _make_combos_csv(rows: list[dict], tmp_path: Path) -> Path:
+    path = tmp_path / "marker_combinations.csv"
+    with path.open("w", encoding="utf-8", newline="") as fh:
+        writer = csv.DictWriter(fh, fieldnames=_COMBOS_FIELDS)
+        writer.writeheader()
+        writer.writerows(rows)
+    return path
+
+
+def _simple_batch_index():
+    return {
+        "CL:0000623": {
+            "label": "natural killer cell",
+            "positive": {"CD56"},
+            "negative": {"CD3"},
+            "high": set(),
+            "low": set(),
+        },
+        "CL:0000624": {
+            "label": "CD4-positive T cell",
+            "positive": {"CD4"},
+            "negative": set(),
+            "high": set(),
+            "low": set(),
+        },
+    }
+
+
+def test_load_marker_combinations(tmp_path):
+    path = _make_combos_csv(
+        [
+            _combos_row(
+                **{
+                    "Ready for OLS": "yes",
+                    "Abbreviation": "NK",
+                    "Full Name": "Natural Killer Cell",
+                    "Type of Match": "Exact",
+                    "Required exclusion": "CD3-",
+                    "Required phenotypic markers": "CD56+",
+                }
+            )
+        ],
+        tmp_path,
+    )
+    rows = cm.load_marker_combinations(path)
+    assert len(rows) == 1
+    assert rows[0]["Abbreviation"] == "NK"
+
+
+def test_score_marker_combinations_row_scores_candidates():
+    row = {
+        "Abbreviation": "NK",
+        "Full Name": "Natural Killer Cell",
+        "Parent": "",
+        "Type of Match": "Exact",
+        "OLS CL identifier": "",
+        "Required exclusion": "CD3-",
+        "Ideal exclusion": "",
+        "Required phenotypic markers": "CD56+",
+        "Ideal phenotypic markers": "",
+    }
+    result = cm.score_marker_combinations_row(row, _simple_batch_index(), top_n=2)
+    assert result["abbreviation"] == "NK"
+    assert result["note"] == ""
+    assert result["candidates"][0]["cl_id"] == "CL:0000623"
+
+
+def test_score_marker_combinations_row_no_markers():
+    row = {
+        "Abbreviation": "X",
+        "Full Name": "Unqualified thing",
+        "Parent": "",
+        "Type of Match": "",
+        "OLS CL identifier": "",
+        "Required exclusion": "",
+        "Ideal exclusion": "",
+        "Required phenotypic markers": "",
+        "Ideal phenotypic markers": "",
+    }
+    result = cm.score_marker_combinations_row(row, _simple_batch_index())
+    assert result["candidates"] == []
+    assert "no qualified markers" in result["note"]
+
+
+def test_run_batch_skips_blank_rows():
+    rows = [
+        {"Abbreviation": "", "Full Name": "", "Required phenotypic markers": ""},
+        {
+            "Abbreviation": "NK",
+            "Full Name": "Natural Killer Cell",
+            "Parent": "",
+            "Type of Match": "",
+            "OLS CL identifier": "",
+            "Required exclusion": "",
+            "Ideal exclusion": "",
+            "Required phenotypic markers": "CD56+",
+            "Ideal phenotypic markers": "",
+        },
+    ]
+    results = cm.run_batch(rows, _simple_batch_index())
+    assert len(results) == 1
+    assert results[0]["abbreviation"] == "NK"
+
+
+def test_run_batch_ready_only_filters():
+    rows = [
+        {
+            "Ready for OLS": "no",
+            "Abbreviation": "A",
+            "Full Name": "A cell",
+            "Required phenotypic markers": "CD56+",
+        },
+        {
+            "Ready for OLS": "yes",
+            "Abbreviation": "B",
+            "Full Name": "B cell",
+            "Required phenotypic markers": "CD4+",
+        },
+    ]
+    results = cm.run_batch(rows, _simple_batch_index(), ready_only=True)
+    assert len(results) == 1
+    assert results[0]["abbreviation"] == "B"
+
+
+def test_batch_results_to_tsv_rows_flattens_candidates():
+    row = {
+        "Abbreviation": "NK",
+        "Full Name": "Natural Killer Cell",
+        "Parent": "",
+        "Type of Match": "Exact",
+        "OLS CL identifier": "",
+        "Required exclusion": "CD3-",
+        "Ideal exclusion": "",
+        "Required phenotypic markers": "CD56+",
+        "Ideal phenotypic markers": "",
+    }
+    result = cm.score_marker_combinations_row(row, _simple_batch_index(), top_n=2)
+    tsv_rows = cm.batch_results_to_tsv_rows([result])
+    assert len(tsv_rows) == 2
+    assert tsv_rows[0]["rank"] == 1
+    assert tsv_rows[0]["cl_id"] == "CL:0000623"
+    assert "CD56+" in tsv_rows[0]["matched"]
+
+
+def test_batch_results_to_tsv_rows_no_candidates_writes_note():
+    result = {
+        "abbreviation": "X",
+        "full_name": "Unscored",
+        "parent": "",
+        "type_of_match": "",
+        "existing_cl_id": "",
+        "candidates": [],
+        "note": "no qualified markers found",
+    }
+    tsv_rows = cm.batch_results_to_tsv_rows([result])
+    assert len(tsv_rows) == 1
+    assert tsv_rows[0]["rank"] == ""
+    assert tsv_rows[0]["note"] == "no qualified markers found"
+
+
+def test_write_batch_tsv(tmp_path):
+    row = {
+        "Abbreviation": "NK",
+        "Full Name": "Natural Killer Cell",
+        "Parent": "",
+        "Type of Match": "Exact",
+        "OLS CL identifier": "",
+        "Required exclusion": "CD3-",
+        "Ideal exclusion": "",
+        "Required phenotypic markers": "CD56+",
+        "Ideal phenotypic markers": "",
+    }
+    result = cm.score_marker_combinations_row(row, _simple_batch_index())
+    out_path = tmp_path / "nested" / "out.tsv"
+    cm.write_batch_tsv(out_path, [result])
+    assert out_path.exists()
+    content = out_path.read_text(encoding="utf-8")
+    assert "CL:0000623" in content
+    assert content.startswith("abbreviation\t")
+
+
+def test_main_batch_writes_tsv(tmp_path, capsys):
+    tsv_rows = [
+        _row("CL:0000623", "natural killer cell", "negative", "CD3 (label)"),
+        _row("CL:0000623", "natural killer cell", "positive", "CD56 (exact)"),
+    ]
+    tsv = _make_tsv(tsv_rows, tmp_path)
+    combos = _make_combos_csv(
+        [
+            _combos_row(
+                **{
+                    "Ready for OLS": "yes",
+                    "Abbreviation": "NK",
+                    "Full Name": "Natural Killer Cell",
+                    "Type of Match": "Exact",
+                    "Required exclusion": "CD3-",
+                    "Required phenotypic markers": "CD56+",
+                }
+            )
+        ],
+        tmp_path,
+    )
+    out_path = tmp_path / "batch_out.tsv"
+
+    rc = cm.main(
+        [
+            "--batch",
+            str(combos),
+            "--batch-out",
+            str(out_path),
+            "--tsv",
+            str(tsv),
+            "--top",
+            "2",
+        ]
+    )
+    assert rc == 0
+    out = capsys.readouterr().out
+    assert "Scored 1 SOULCAP cell types" in out
+    assert out_path.exists()
+    content = out_path.read_text(encoding="utf-8")
+    assert "CL:0000623" in content
+
+
+def test_main_batch_missing_combinations_file(tmp_path, capsys):
+    tsv = _make_tsv([_row("CL:1", "foo", "positive", "CD56 (exact)")], tmp_path)
+    rc = cm.main(
+        [
+            "--batch",
+            str(tmp_path / "missing.csv"),
+            "--tsv",
+            str(tsv),
+        ]
+    )
+    assert rc == 1
+    assert "not found" in capsys.readouterr().err
+
+
+def test_main_batch_ready_only_flag(tmp_path, capsys):
+    tsv_rows = [_row("CL:0000623", "NK", "positive", "CD56 (exact)")]
+    tsv = _make_tsv(tsv_rows, tmp_path)
+    combos = _make_combos_csv(
+        [
+            _combos_row(
+                **{
+                    "Ready for OLS": "no",
+                    "Abbreviation": "A",
+                    "Full Name": "A cell",
+                    "Required phenotypic markers": "CD4+",
+                }
+            ),
+            _combos_row(
+                **{
+                    "Ready for OLS": "yes",
+                    "Abbreviation": "NK",
+                    "Full Name": "Natural Killer Cell",
+                    "Required phenotypic markers": "CD56+",
+                }
+            ),
+        ],
+        tmp_path,
+    )
+    out_path = tmp_path / "batch_out.tsv"
+    rc = cm.main(
+        [
+            "--batch",
+            str(combos),
+            "--batch-out",
+            str(out_path),
+            "--tsv",
+            str(tsv),
+            "--ready-only",
+        ]
+    )
+    assert rc == 0
+    content = out_path.read_text(encoding="utf-8")
+    assert "NK" in content
+    assert "\nA\t" not in content
+
+
+# --------------------------------------------------------------------------- #
+# Lexical batch mode
+# --------------------------------------------------------------------------- #
+def test_lexical_query_for_row_prefers_full_name():
+    row = _combos_row(**{"Full Name": "Natural Killer Cell", "Abbreviation": "NK"})
+    assert cm._lexical_query_for_row(row) == "Natural Killer Cell"
+
+
+def test_lexical_query_for_row_falls_back_to_abbreviation():
+    row = _combos_row(**{"Full Name": "", "Abbreviation": "NK"})
+    assert cm._lexical_query_for_row(row) == "NK"
+
+
+def test_run_lexical_batch_success():
+    row = _combos_row(**{"Abbreviation": "NK", "Full Name": "Natural Killer Cell"})
+    with patch.object(cm.ols4_lookup, "search") as mock_search:
+        mock_search.return_value = [
+            {"obo_id": "CL:0000623", "label": "natural killer cell"},
+            {"obo_id": "CL:0000938", "label": "CD56-bright natural killer cell"},
+        ]
+        results = cm.run_lexical_batch([row], top_n=2, sleep_between=0)
+    assert len(results) == 1
+    assert results[0]["candidates"][0]["cl_id"] == "CL:0000623"
+    assert results[0]["note"] == ""
+    mock_search.assert_called_once_with(
+        "Natural Killer Cell", ontology="cl", rows=cm._LEXICAL_FETCH_ROWS
+    )
+
+
+def test_run_lexical_batch_promotes_exact_label_match():
+    # Regression: OLS4's relevance order buries the exact label match behind
+    # more-specific subtype variants (e.g. rank 23 for "Natural Killer Cell").
+    # A wider fetch + exact-match promotion must still surface it as rank 1.
+    row = _combos_row(**{"Abbreviation": "NK", "Full Name": "Natural Killer Cell"})
+    with patch.object(cm.ols4_lookup, "search") as mock_search:
+        mock_search.return_value = [
+            {"obo_id": "CL:4047101", "label": "liver-resident natural killer cell"},
+            {
+                "obo_id": "CL:0000939",
+                "label": "CD16-positive, CD56-dim natural killer cell, human",
+            },
+            {"obo_id": "CL:0000623", "label": "natural killer cell"},  # exact, buried
+            {"obo_id": "CL:4052028", "label": "uterine natural killer cell"},
+        ]
+        results = cm.run_lexical_batch([row], top_n=2, sleep_between=0)
+    candidates = results[0]["candidates"]
+    assert len(candidates) == 2
+    assert candidates[0]["cl_id"] == "CL:0000623"  # promoted to rank 1
+    assert candidates[1]["cl_id"] == "CL:4047101"  # original order preserved otherwise
+
+
+def test_run_lexical_batch_filters_non_cl_hits():
+    row = _combos_row(**{"Abbreviation": "NK", "Full Name": "Natural Killer Cell"})
+    with patch.object(cm.ols4_lookup, "search") as mock_search:
+        mock_search.return_value = [
+            {"obo_id": "GO:0001234", "label": "something unrelated"},
+            {"obo_id": "CL:0000623", "label": "natural killer cell"},
+        ]
+        results = cm.run_lexical_batch([row], top_n=2, sleep_between=0)
+    assert len(results[0]["candidates"]) == 1
+    assert results[0]["candidates"][0]["cl_id"] == "CL:0000623"
+
+
+def test_run_lexical_batch_no_hits():
+    row = _combos_row(**{"Abbreviation": "X", "Full Name": "Nonexistent Cell"})
+    with patch.object(cm.ols4_lookup, "search") as mock_search:
+        mock_search.return_value = []
+        results = cm.run_lexical_batch([row], sleep_between=0)
+    assert results[0]["candidates"] == []
+    assert results[0]["note"] == "no CL hits"
+
+
+def test_run_lexical_batch_handles_search_exception():
+    row = _combos_row(**{"Abbreviation": "X", "Full Name": "X cell"})
+    with patch.object(cm.ols4_lookup, "search") as mock_search:
+        mock_search.side_effect = RuntimeError("network error")
+        results = cm.run_lexical_batch([row], sleep_between=0)
+    assert results[0]["candidates"] == []
+    assert "OLS4 search failed" in results[0]["note"]
+
+
+def test_run_lexical_batch_skips_blank_rows():
+    rows = [
+        _combos_row(),
+        _combos_row(**{"Abbreviation": "NK", "Full Name": "NK cell"}),
+    ]
+    with patch.object(cm.ols4_lookup, "search") as mock_search:
+        mock_search.return_value = [
+            {"obo_id": "CL:0000623", "label": "natural killer cell"}
+        ]
+        results = cm.run_lexical_batch(rows, sleep_between=0)
+    assert len(results) == 1
+    assert results[0]["abbreviation"] == "NK"
+
+
+def test_run_lexical_batch_ready_only_filters():
+    rows = [
+        _combos_row(
+            **{"Ready for OLS": "no", "Abbreviation": "A", "Full Name": "A cell"}
+        ),
+        _combos_row(
+            **{"Ready for OLS": "yes", "Abbreviation": "B", "Full Name": "B cell"}
+        ),
+    ]
+    with patch.object(cm.ols4_lookup, "search") as mock_search:
+        mock_search.return_value = []
+        results = cm.run_lexical_batch(rows, ready_only=True, sleep_between=0)
+    assert len(results) == 1
+    assert results[0]["abbreviation"] == "B"
+
+
+def test_merge_marker_and_lexical_agreement_yes():
+    marker_results = [
+        {
+            "abbreviation": "NK",
+            "full_name": "Natural Killer Cell",
+            "parent": "",
+            "type_of_match": "Exact",
+            "existing_cl_id": "",
+            "candidates": [
+                {
+                    "cl_id": "CL:0000623",
+                    "label": "natural killer cell",
+                    "score": 13,
+                    "matched": [],
+                    "contradictions": [],
+                    "gaps": [],
+                    "hint_bonus": 0,
+                }
+            ],
+            "note": "",
+        }
+    ]
+    lexical_results = [
+        {
+            "abbreviation": "NK",
+            "candidates": [{"cl_id": "CL:0000623", "label": "natural killer cell"}],
+            "note": "",
+        }
+    ]
+    merged = cm.merge_marker_and_lexical(marker_results, lexical_results)
+    assert merged[0]["agreement"] == "yes"
+    assert merged[0]["marker_cl_id"] == "CL:0000623"
+    assert merged[0]["lexical_cl_id"] == "CL:0000623"
+
+
+def test_merge_marker_and_lexical_agreement_no():
+    marker_results = [
+        {
+            "abbreviation": "T cell",
+            "full_name": "T lymphocyte",
+            "parent": "",
+            "type_of_match": "Exact",
+            "existing_cl_id": "",
+            "candidates": [
+                {
+                    "cl_id": "CL:0001024",
+                    "label": "CD34+ CD38- hematopoietic stem cell",
+                    "score": 17,
+                    "matched": [],
+                    "contradictions": ["CD3+"],
+                    "gaps": [],
+                    "hint_bonus": 0,
+                }
+            ],
+            "note": "",
+        }
+    ]
+    lexical_results = [
+        {
+            "abbreviation": "T cell",
+            "candidates": [{"cl_id": "CL:0000084", "label": "T cell"}],
+            "note": "",
+        }
+    ]
+    merged = cm.merge_marker_and_lexical(marker_results, lexical_results)
+    assert merged[0]["agreement"] == "no"
+    assert merged[0]["marker_conflict"] == "CD3+"
+    assert merged[0]["lexical_cl_id"] == "CL:0000084"
+
+
+def test_merge_marker_and_lexical_missing_lexical_row():
+    marker_results = [
+        {
+            "abbreviation": "NK",
+            "full_name": "Natural Killer Cell",
+            "parent": "",
+            "type_of_match": "",
+            "existing_cl_id": "",
+            "candidates": [],
+            "note": "no qualified markers found",
+        }
+    ]
+    merged = cm.merge_marker_and_lexical(marker_results, [])
+    assert merged[0]["agreement"] == "no"
+    assert merged[0]["marker_cl_id"] == ""
+    assert merged[0]["lexical_cl_id"] == ""
+
+
+def test_write_agreement_tsv(tmp_path):
+    merged = [
+        {
+            "abbreviation": "NK",
+            "full_name": "Natural Killer Cell",
+            "parent": "",
+            "type_of_match": "Exact",
+            "existing_cl_id": "",
+            "marker_cl_id": "CL:0000623",
+            "marker_cl_label": "natural killer cell",
+            "marker_score": 13,
+            "marker_conflict": "",
+            "marker_note": "",
+            "lexical_cl_id": "CL:0000623",
+            "lexical_cl_label": "natural killer cell",
+            "lexical_note": "",
+            "agreement": "yes",
+        }
+    ]
+    out_path = tmp_path / "nested" / "agreement.tsv"
+    cm.write_agreement_tsv(out_path, merged)
+    content = out_path.read_text(encoding="utf-8")
+    assert content.startswith("abbreviation\t")
+    assert "CL:0000623" in content
+    assert "yes" in content
+
+
+def test_main_batch_lexical_flag(tmp_path, capsys):
+    tsv_rows = [
+        _row("CL:0000623", "natural killer cell", "negative", "CD3 (label)"),
+        _row("CL:0000623", "natural killer cell", "positive", "CD56 (exact)"),
+    ]
+    tsv = _make_tsv(tsv_rows, tmp_path)
+    combos = _make_combos_csv(
+        [
+            _combos_row(
+                **{
+                    "Ready for OLS": "yes",
+                    "Abbreviation": "NK",
+                    "Full Name": "Natural Killer Cell",
+                    "Type of Match": "Exact",
+                    "Required exclusion": "CD3-",
+                    "Required phenotypic markers": "CD56+",
+                }
+            )
+        ],
+        tmp_path,
+    )
+    batch_out = tmp_path / "batch.tsv"
+    agreement_out = tmp_path / "agreement.tsv"
+
+    with patch.object(cm.ols4_lookup, "search") as mock_search:
+        mock_search.return_value = [
+            {"obo_id": "CL:0000623", "label": "natural killer cell"}
+        ]
+        rc = cm.main(
+            [
+                "--batch",
+                str(combos),
+                "--batch-out",
+                str(batch_out),
+                "--tsv",
+                str(tsv),
+                "--lexical",
+                "--agreement-out",
+                str(agreement_out),
+            ]
+        )
+    assert rc == 0
+    out = capsys.readouterr().out
+    assert "agreement" in out.lower()
+    assert agreement_out.exists()
+    content = agreement_out.read_text(encoding="utf-8")
+    assert "yes" in content
diff --git a/tests/test_hgnc_map.py b/tests/test_hgnc_map.py
index c3cf1e1..dc440ca 100644
--- a/tests/test_hgnc_map.py
+++ b/tests/test_hgnc_map.py
@@ -185,6 +185,65 @@ def test_collect_pr_mappings_skips_empty_pr() -> None:
     assert result == {}
 
 
+def test_collect_pr_mappings_override_fills_empty() -> None:
+    """Overrides supply UniProt for PRs with no uniprot_human in the TSV."""
+    rows = [{"pr": "PR:000001479", "uniprot_human": ""}]
+    overrides = {"PR:000001479": "UniProtKB:P12318"}
+    result = hgnc_map.collect_pr_mappings(rows, overrides=overrides)
+    assert result == {"PR:000001479": "UniProtKB:P12318"}
+
+
+def test_collect_pr_mappings_override_does_not_clobber_existing() -> None:
+    """Overrides must not replace a UniProt entry already in the TSV."""
+    rows = [{"pr": "PR:000001479", "uniprot_human": "UniProtKB:P15391"}]
+    overrides = {"PR:000001479": "UniProtKB:P12318"}
+    result = hgnc_map.collect_pr_mappings(rows, overrides=overrides)
+    assert result == {"PR:000001479": "UniProtKB:P15391"}
+
+
+def test_collect_pr_mappings_no_overrides_unchanged() -> None:
+    """Passing no overrides leaves the result identical to the original behaviour."""
+    rows = [{"pr": "PR:000001479", "uniprot_human": ""}]
+    assert hgnc_map.collect_pr_mappings(rows) == {"PR:000001479": ""}
+
+
+# --------------------------------------------------------------------------- #
+# load_overrides
+# --------------------------------------------------------------------------- #
+
+
+def test_load_overrides_reads_csv(tmp_path: Path) -> None:
+    csv_file = tmp_path / "overrides.csv"
+    csv_file.write_text(
+        "pr,uniprot_human\nPR:000001479,UniProtKB:P12318\n", encoding="utf-8"
+    )
+    result = hgnc_map.load_overrides(csv_file)
+    assert result == {"PR:000001479": "UniProtKB:P12318"}
+
+
+def test_load_overrides_strips_isoform_suffix(tmp_path: Path) -> None:
+    csv_file = tmp_path / "overrides.csv"
+    csv_file.write_text(
+        "pr,uniprot_human\nPR:000001479,UniProtKB:P12318-2\n", encoding="utf-8"
+    )
+    result = hgnc_map.load_overrides(csv_file)
+    assert result == {"PR:000001479": "UniProtKB:P12318"}
+
+
+def test_load_overrides_missing_file_returns_empty(tmp_path: Path) -> None:
+    result = hgnc_map.load_overrides(tmp_path / "nonexistent.csv")
+    assert result == {}
+
+
+def test_load_overrides_skips_blank_rows(tmp_path: Path) -> None:
+    csv_file = tmp_path / "overrides.csv"
+    csv_file.write_text(
+        "pr,uniprot_human\nPR:000001479,UniProtKB:P12318\n,\n", encoding="utf-8"
+    )
+    result = hgnc_map.load_overrides(csv_file)
+    assert result == {"PR:000001479": "UniProtKB:P12318"}
+
+
 # --------------------------------------------------------------------------- #
 # fetch_normalized_nodes
 # --------------------------------------------------------------------------- #
diff --git a/tests/test_marker_map.py b/tests/test_marker_map.py
index 38a96ac..88b98b9 100644
--- a/tests/test_marker_map.py
+++ b/tests/test_marker_map.py
@@ -444,6 +444,44 @@ def test_resolve_group4_not_found() -> None:
     assert result["gene_symbol"] == "IFNG"  # falls back to provided symbol
 
 
+def test_resolve_group4_fetches_pro_term_via_uniprot() -> None:
+    session = _make_session(HGNC_IFNG_RESPONSE, OLS4_PR_TERM_RESPONSE)
+    result = marker_map.resolve_group4(
+        "IFNg",
+        "col",
+        "IFNG",
+        session,
+        hgnc_url="http://hgnc",
+        ols4_url="http://ols4",
+        sleep_between=0,
+    )
+    assert result["pro_id"] == "PR:P05112"
+    assert result["pro_label"] == "interleukin-4 (human)"
+    assert "ols4" in result["evidence"]
+
+
+def test_resolve_group4_no_uniprot_skips_pro_lookup() -> None:
+    session = _make_session(
+        {
+            "response": {
+                "numFound": 1,
+                "docs": [{"hgnc_id": "HGNC:1", "symbol": "X", "name": "x"}],
+            }
+        }
+    )
+    result = marker_map.resolve_group4(
+        "IFNg",
+        "col",
+        "IFNG",
+        session,
+        hgnc_url="http://hgnc",
+        ols4_url="http://ols4",
+        sleep_between=0,
+    )
+    assert result["pro_id"] == ""
+    session.get.assert_called_once()  # only the HGNC call, no PRO lookup
+
+
 def test_resolve_group4_hgnc_id_already_prefixed() -> None:
     """hgnc_id in HGNC API already has 'HGNC:' prefix — should not double-prefix."""
     session = _make_session(
@@ -510,6 +548,74 @@ def test_resolve_group6_gene_token() -> None:
     assert "TRAV10" in result["notes"]
 
 
+def test_resolve_group6_gene_token_fetches_pro_term_via_uniprot() -> None:
+    hgnc_with_uniprot = {
+        "response": {
+            "numFound": 1,
+            "docs": [
+                {
+                    "hgnc_id": "HGNC:12124",
+                    "symbol": "TRAV10",
+                    "name": "T cell receptor alpha variable 10",
+                    "uniprot_ids": ["A0A0B4J240"],
+                }
+            ],
+        }
+    }
+    pro_response = {
+        "_embedded": {
+            "terms": [
+                {
+                    "obo_id": "PR:A0A0B4J240",
+                    "label": "T cell receptor alpha variable 10 (human)",
+                }
+            ]
+        }
+    }
+    session = _make_session(hgnc_with_uniprot, pro_response)
+    result = marker_map.resolve_group6_gene_token(
+        "TCRVa24",
+        "col",
+        "TRAV10",
+        "",
+        session,
+        hgnc_url="http://hgnc",
+        ols4_url="http://ols4",
+        sleep_between=0,
+    )
+    assert result["pro_id"] == "PR:A0A0B4J240"
+    assert result["uniprot_id"] == "A0A0B4J240"
+
+
+def test_resolve_group6_gene_token_no_pro_hit_keeps_medium_confidence() -> None:
+    hgnc_with_uniprot = {
+        "response": {
+            "numFound": 1,
+            "docs": [
+                {
+                    "hgnc_id": "HGNC:1",
+                    "symbol": "TRBV25-1",
+                    "name": "TCR beta variable 25-1",
+                    "uniprot_ids": ["A0A075B6N4"],
+                }
+            ],
+        }
+    }
+    session = _make_session(hgnc_with_uniprot, {"_embedded": {"terms": []}})
+    result = marker_map.resolve_group6_gene_token(
+        "TCRVb11",
+        "col",
+        "TRBV25-1",
+        "",
+        session,
+        hgnc_url="http://hgnc",
+        ols4_url="http://ols4",
+        sleep_between=0,
+    )
+    assert result["pro_id"] == ""
+    assert result["confidence"] == "medium"
+
+
 def test_resolve_group6_gene_token_not_found() -> None:
     session = _make_session({"response": {"numFound": 0, "docs": []}})
     result = marker_map.resolve_group6_gene_token(
@@ -560,6 +666,30 @@ def test_resolve_group7_mr1() -> None:
     assert "MR1 tetramer" in result["notes"]
 
 
+def test_resolve_group7_mr1_fetches_pro_term_via_uniprot() -> None:
+    pro_response = {
+        "_embedded": {
+            "terms": [
+                {
+                    "obo_id": "PR:Q95460",
+                    "label": "major histocompatibility complex class I-related protein 1 (human)",
+                }
+            ]
+        }
+    }
+    session = _make_session(HGNC_MR1_RESPONSE, pro_response)
+    result = marker_map.resolve_group7_mr1(
+        "MR1",
+        "col",
+        session,
+        hgnc_url="http://hgnc",
+        ols4_url="http://ols4",
+        sleep_between=0,
+    )
+    assert result["pro_id"] == "PR:Q95460"
+    assert "class I-related" in result["pro_label"]
+
+
 # --------------------------------------------------------------------------- #
 # fetch_hgnc_by_symbol
 # --------------------------------------------------------------------------- #
@@ -646,6 +776,54 @@ def test_search_ols4_pr_skips_non_pr_docs() -> None:
     assert result["pr_id"] == "PR:000001"
 
 
+# --------------------------------------------------------------------------- #
+# fetch_pr_by_uniprot
+# --------------------------------------------------------------------------- #
+
+OLS4_PR_TERM_RESPONSE = {
+    "_embedded": {
+        "terms": [
+            {"obo_id": "PR:P05112", "label": "interleukin-4 (human)"},
+        ]
+    }
+}
+
+
+def test_fetch_pr_by_uniprot_found() -> None:
+    session = _make_session(OLS4_PR_TERM_RESPONSE)
+    result = marker_map.fetch_pr_by_uniprot("P05112", session, ols4_url="http://ols4")
+    assert result is not None
+    assert result["pr_id"] == "PR:P05112"
+    assert result["pr_label"] == "interleukin-4 (human)"
+
+
+def test_fetch_pr_by_uniprot_empty_id_returns_none() -> None:
+    session = MagicMock()
+    result = marker_map.fetch_pr_by_uniprot("", session, ols4_url="http://ols4")
+    assert result is None
+    session.get.assert_not_called()
+
+
+def test_fetch_pr_by_uniprot_no_terms_embedded() -> None:
+    session = _make_session({"_embedded": {"terms": []}})
+    result = marker_map.fetch_pr_by_uniprot(
+        "ZZZNOTREAL", session, ols4_url="http://ols4"
+    )
+    assert result is None
+
+
+def test_fetch_pr_by_uniprot_404_returns_none() -> None:
+    session = MagicMock()
+    resp = MagicMock()
+    resp.status_code = 404
+    session.get.return_value = resp
+    result = marker_map.fetch_pr_by_uniprot(
+        "ZZZNOTREAL", session, ols4_url="http://ols4"
+    )
+    assert result is None
+    resp.raise_for_status.assert_not_called()
+
+
 # --------------------------------------------------------------------------- #
 # extract_monarch_identifiers
 # --------------------------------------------------------------------------- #
@@ -750,20 +928,31 @@ def test_write_csv(tmp_path: Path) -> None:
 def _build_mock_session_for_run() -> MagicMock:
     """Build a session that responds to the API calls made during run() for the
     minimal test token set in MARKER_TOKENS_TSV_CONTENT."""
-    # Calls made:
+    # Calls made, in token-iteration order:
     # 1. OLS4 search for "CD57" (Group 3)
     # 2. Monarch lookup for PR:000015709 (Group 3)
     # 3. HGNC lookup for IFNG (Group 4)
-    # 4. HGNC lookup for TRAV10 (Group 6 — TCRVa24)
-    # 5. HGNC lookup for TRAV10 again for TCRva24 duplicate (no call — copy)
-    # 6. HGNC lookup for TRBV25-1 (Vb11 / VB11 / TCRVb11 not in our minimal token list)
-    # 7. HGNC lookup for TRDV1 (Vd1 — Group 6)
-    # 8. HGNC lookup for MR1 (Group 7)
+    # 4. PRO term fetch for IFNG's UniProt P01579 (Group 4 — has a uniprot hit)
+    # 5. HGNC lookup for TRAV10 (Group 6 — TCRVa24; no uniprot -> no PRO call)
+    # 6. HGNC lookup for TRAV10 again for TCRva24 duplicate (no call — copy)
+    # 7. HGNC lookup for TRBV25-1 (Vb11 / VB11 / TCRVb11 not in our minimal token list)
+    # 8. HGNC lookup for TRDV1 (Vd1 — Group 6; no uniprot -> no PRO call)
+    # 9. HGNC lookup for MR1 (Group 7)
+    # 10. PRO term fetch for MR1's UniProt Q95460 (Group 7 — has a uniprot hit)
     session = MagicMock()
     session.get.side_effect = [
         _make_mock_response(OLS4_CD57_RESPONSE),  # CD57 OLS4
         _make_mock_response(MONARCH_PR_000015709),  # CD57 Monarch
         _make_mock_response(HGNC_IFNG_RESPONSE),  # IFNg
+        _make_mock_response(  # IFNg PRO term (P01579)
+            {
+                "_embedded": {
+                    "terms": [
+                        {"obo_id": "PR:P01579", "label": "interferon gamma (human)"}
+                    ]
+                }
+            }
+        ),
         _make_mock_response(HGNC_TRAV10_RESPONSE),  # TCRVa24
         _make_mock_response(
             {  # Vd1 → TRDV1
@@ -781,6 +970,21 @@ def _build_mock_session_for_run() -> MagicMock:
             }
         ),
         _make_mock_response(HGNC_MR1_RESPONSE),  # MR1
+        _make_mock_response(  # MR1 PRO term (Q95460)
+            {
+                "_embedded": {
+                    "terms": [
+                        {
+                            "obo_id": "PR:Q95460",
+                            "label": (
+                                "major histocompatibility complex class "
+                                "I-related protein 1 (human)"
+                            ),
+                        }
+                    ]
+                }
+            }
+        ),
     ]
     return session
 
diff --git a/tests/test_oak_match.py b/tests/test_oak_match.py
new file mode 100644
index 0000000..e1d2076
--- /dev/null
+++ b/tests/test_oak_match.py
@@ -0,0 +1,203 @@
+"""Tests for soulcap_cl_mapping.oak_match.
+
+The real OAK sqlite:obo:cl adapter downloads a ~100MB database on first use
+— all tests here use a fake in-memory adapter instead, never touching OAK's
+network/download path.
+"""
+
+from __future__ import annotations
+
+from unittest.mock import MagicMock, patch
+
+from soulcap_cl_mapping import oak_match as om
+
+
+def _make_adapter(exact_hits=None, partial_hits=None, labels=None, aliases=None):
+    """Build a fake OAK adapter with canned search/label/alias responses."""
+    exact_hits = exact_hits or []
+    partial_hits = partial_hits or []
+    labels = labels or {}
+    aliases = aliases or {}
+
+    adapter = MagicMock()
+
+    def basic_search(query, config=None):
+        is_partial = bool(getattr(config, "is_partial", False))
+        return partial_hits if is_partial else exact_hits
+
+    adapter.basic_search.side_effect = basic_search
+    adapter.label.side_effect = lambda curie: labels.get(curie, "")
+    adapter.entity_aliases.side_effect = lambda curie: aliases.get(curie, [])
+    return adapter
+
+
+# --------------------------------------------------------------------------- #
+# rank_candidates
+# --------------------------------------------------------------------------- #
+def test_rank_candidates_exact_label_match():
+    adapter = _make_adapter(
+        exact_hits=["CL:0000623"],
+        labels={"CL:0000623": "natural killer cell"},
+        aliases={"CL:0000623": ["NK cell", "null cell"]},
+    )
+    results = om.rank_candidates("natural killer cell", adapter)
+    assert len(results) == 1
+    assert results[0]["cl_id"] == "CL:0000623"
+    assert results[0]["match_type"] == "exact_label"
+    assert results[0]["matched_alias"] == ""
+
+
+def test_rank_candidates_exact_synonym_match():
+    adapter = _make_adapter(
+        exact_hits=["CL:0000623"],
+        labels={"CL:0000623": "natural killer cell"},
+        aliases={"CL:0000623": ["NK cell"]},
+    )
+    results = om.rank_candidates("NK cell", adapter)
+    assert results[0]["match_type"] == "exact_synonym"
+    assert results[0]["matched_alias"] == "NK cell"
+
+
+def test_rank_candidates_partial_match_classification():
+    adapter = _make_adapter(
+        exact_hits=["CL:0000043"],
+        labels={"CL:0000043": "mature basophil"},
+        aliases={"CL:0000043": []},
+    )
+    results = om.rank_candidates("basophil", adapter)
+    assert results[0]["match_type"] == "partial"
+    assert results[0]["matched_alias"] == ""
+
+
+def test_rank_candidates_filters_non_cl_hits():
+    adapter = _make_adapter(
+        exact_hits=["CL:0000623", "PR:000001893", "GO:0002611"],
+        labels={"CL:0000623": "natural killer cell"},
+        aliases={"CL:0000623": []},
+    )
+    results = om.rank_candidates("natural killer cell", adapter)
+    assert len(results) == 1
+    assert results[0]["cl_id"] == "CL:0000623"
+
+
+def test_rank_candidates_falls_back_to_partial_when_exact_empty():
+    adapter = _make_adapter(
+        exact_hits=[],
+        partial_hits=["CL:0001067"],
+        labels={"CL:0001067": "group 1 innate lymphoid cell"},
+        aliases={"CL:0001067": []},
+    )
+    results = om.rank_candidates("ILC1", adapter)
+    assert len(results) == 1
+    assert results[0]["cl_id"] == "CL:0001067"
+
+
+def test_rank_candidates_no_fallback_when_exact_has_results():
+    adapter = _make_adapter(
+        exact_hits=["CL:0000623"],
+        partial_hits=["CL:9999999"],  # should never be reached
+        labels={"CL:0000623": "natural killer cell"},
+        aliases={"CL:0000623": []},
+    )
+    results = om.rank_candidates("natural killer cell", adapter)
+    assert {r["cl_id"] for r in results} == {"CL:0000623"}
+
+
+def test_rank_candidates_respects_top_n():
+    adapter = _make_adapter(
+        exact_hits=["CL:1", "CL:2", "CL:3"],
+        labels={"CL:1": "a", "CL:2": "b", "CL:3": "c"},
+        aliases={},
+    )
+    results = om.rank_candidates("x", adapter, top_n=2)
+    assert len(results) == 2
+
+
+def test_rank_candidates_exact_label_ranks_above_partial():
+    adapter = _make_adapter(
+        exact_hits=["CL:1", "CL:2"],
+        labels={"CL:1": "something else", "CL:2": "natural killer cell"},
+        aliases={"CL:1": [], "CL:2": []},
+    )
+    results = om.rank_candidates("natural killer cell", adapter)
+    assert results[0]["cl_id"] == "CL:2"
+    assert results[0]["match_type"] == "exact_label"
+
+
+def test_rank_candidates_no_results():
+    adapter = _make_adapter(exact_hits=[], partial_hits=[])
+    results = om.rank_candidates("nonexistent thing", adapter)
+    assert results == []
+
+
+# --------------------------------------------------------------------------- #
+# format_candidate
+# --------------------------------------------------------------------------- #
+def test_format_candidate_includes_fields():
+    r = {
+        "cl_id": "CL:0000623",
+        "label": "natural killer cell",
+        "match_type": "exact_label",
+        "matched_alias": "",
+    }
+    out = om.format_candidate(1, r)
+    assert "CL:0000623" in out
+    assert "natural killer cell" in out
+    assert "exact_label" in out
+
+
+def test_format_candidate_shows_alias_note():
+    r = {
+        "cl_id": "CL:0000623",
+        "label": "natural killer cell",
+        "match_type": "exact_synonym",
+        "matched_alias": "NK cell",
+    }
+    out = om.format_candidate(1, r)
+    assert "NK cell" in out
+
+
+# --------------------------------------------------------------------------- #
+# CLI
+# --------------------------------------------------------------------------- #
+def test_main_success(capsys):
+    adapter = _make_adapter(
+        exact_hits=["CL:0000623"],
+        labels={"CL:0000623": "natural killer cell"},
+        aliases={"CL:0000623": []},
+    )
+    with patch.object(om, "get_cl_adapter", return_value=adapter):
+        rc = om.main(["natural killer cell"])
+    assert rc == 0
+    out = capsys.readouterr().out
+    assert "CL:0000623" in out
+
+
+def test_main_no_results(capsys):
+    adapter = _make_adapter(exact_hits=[], partial_hits=[])
+    with patch.object(om, "get_cl_adapter", return_value=adapter):
+        rc = om.main(["totally nonexistent cell type"])
+    assert rc == 1
+    assert "No CL candidates" in capsys.readouterr().err
+
+
+def test_main_adapter_error(capsys):
+    with patch.object(om, "get_cl_adapter", side_effect=RuntimeError("boom")):
+        rc = om.main(["natural killer cell"])
+    assert rc == 1
+    assert "boom" in capsys.readouterr().err
+
+
+def test_main_respects_top_flag(capsys):
+    adapter = _make_adapter(
+        exact_hits=["CL:1", "CL:2", "CL:3"],
+        labels={"CL:1": "a", "CL:2": "b", "CL:3": "c"},
+        aliases={},
+    )
+    with patch.object(om, "get_cl_adapter", return_value=adapter):
+        rc = om.main(["x", "--top", "1"])
+    assert rc == 0
+    out = capsys.readouterr().out
+    assert "CL:1" in out
+    assert "CL:2" not in out
+    assert "CL:3" not in out
diff --git a/tests/test_sssom_export.py b/tests/test_sssom_export.py
new file mode 100644
index 0000000..9887822
--- /dev/null
+++ b/tests/test_sssom_export.py
@@ -0,0 +1,304 @@
+"""Tests for soulcap_cl_mapping.sssom_export."""
+
+from __future__ import annotations
+
+import csv
+from pathlib import Path
+
+from soulcap_cl_mapping import sssom_export as se
+
+# --------------------------------------------------------------------------- #
+# Helpers
+# --------------------------------------------------------------------------- #
+_TSV_FIELDS = [
+    "cell",
+    "cell_label",
+    "sense",
+    "asserted",
+    "pr",
+    "pr_label",
+    "cd_synonym",
+]
+
+
+def _make_tsv(rows: list[dict], tmp_path: Path) -> Path:
+    path = tmp_path / "cl_pro.tsv"
+    with path.open("w", encoding="utf-8", newline="") as fh:
+        writer = csv.DictWriter(fh, fieldnames=_TSV_FIELDS, delimiter="\t")
+        writer.writeheader()
+        for row in rows:
+            writer.writerow(row)
+    return path
+
+
+def _row(cell: str, asserted: str) -> dict:
+    return {
+        "cell": cell,
+        "cell_label": "x",
+        "sense": "positive",
+        "asserted": asserted,
+        "pr": "",
+        "pr_label": "",
+        "cd_synonym": "",
+    }
+
+
+# --------------------------------------------------------------------------- #
+# load_assertion_status
+# --------------------------------------------------------------------------- #
+def test_load_assertion_status_confirmed(tmp_path):
+    tsv = _make_tsv([_row("CL:1", "True")], tmp_path)
+    status = se.load_assertion_status(tsv)
+    assert status["CL:1"] is True
+
+
+def test_load_assertion_status_inferred_only(tmp_path):
+    tsv = _make_tsv([_row("CL:1", "False")], tmp_path)
+    status = se.load_assertion_status(tsv)
+    assert status["CL:1"] is False
+
+
+def test_load_assertion_status_any_true_wins(tmp_path):
+    tsv = _make_tsv([_row("CL:1", "False"), _row("CL:1", "True")], tmp_path)
+    status = se.load_assertion_status(tsv)
+    assert status["CL:1"] is True
+
+
+def test_load_assertion_status_missing_cl_id_absent(tmp_path):
+    tsv = _make_tsv([_row("CL:1", "True")], tmp_path)
+    status = se.load_assertion_status(tsv)
+    assert "CL:999" not in status
+
+
+# --------------------------------------------------------------------------- #
+# classify_evidence
+# --------------------------------------------------------------------------- #
+def test_classify_evidence_confirmed():
+    assert se.classify_evidence("CL:1", {"CL:1": True}) == "confirmed"
+
+
+def test_classify_evidence_inferred_only():
+    assert se.classify_evidence("CL:1", {"CL:1": False}) == "inferred_only"
+
+
+def test_classify_evidence_no_marker_axiom():
+    assert se.classify_evidence("CL:999", {"CL:1": True}) == "no_marker_axiom"
+
+
+# --------------------------------------------------------------------------- #
+# build_mapping_rows
+# --------------------------------------------------------------------------- #
+def test_build_mapping_rows_confirmed_exact_confidence():
+    curated = [
+        {
+            "abbreviation": "X",
+            "subject_label": "X cell",
+            "cl_id": "CL:1",
+            "cl_label": "x cell",
+            "match_type": "Exact",
+        }
+    ]
+    rows = se.build_mapping_rows(curated, {"CL:1": True})
+    r = rows[0]
+    assert r["confidence"] == 0.9
+    assert r["predicate_id"] == "skos:exactMatch"
+    assert r["mapping_cardinality"] == "1:1"
+    assert "directly-asserted" in r["comment"]
+
+
+def test_build_mapping_rows_inferred_only_lower_confidence():
+    curated = [
+        {
+            "abbreviation": "X",
+            "subject_label": "X cell",
+            "cl_id": "CL:1",
+            "cl_label": "x cell",
+            "match_type": "Exact",
+        }
+    ]
+    rows = se.build_mapping_rows(curated, {"CL:1": False})
+    r = rows[0]
+    assert r["confidence"] == 0.6
+    assert "inferred" in r["comment"].lower()
+
+
+def test_build_mapping_rows_no_marker_axiom_lowest_confirmed_tier():
+    curated = [
+        {
+            "abbreviation": "X",
+            "subject_label": "X cell",
+            "cl_id": "CL:999",
+            "cl_label": "x cell",
+            "match_type": "Exact",
+        }
+    ]
+    rows = se.build_mapping_rows(curated, {"CL:1": True})
+    r = rows[0]
+    assert r["confidence"] == 0.55
+    assert "no marker axiom" in r["comment"].lower()
+
+
+def test_build_mapping_rows_broad_match_lower_than_exact():
+    curated_exact = [
+        {
+            "abbreviation": "X",
+            "subject_label": "X",
+            "cl_id": "CL:1",
+            "cl_label": "x",
+            "match_type": "Exact",
+        }
+    ]
+    curated_broad = [
+        {
+            "abbreviation": "Y",
+            "subject_label": "Y",
+            "cl_id": "CL:1",
+            "cl_label": "x",
+            "match_type": "Broad",
+        }
+    ]
+    exact_conf = se.build_mapping_rows(curated_exact, {"CL:1": True})[0]["confidence"]
+    broad_conf = se.build_mapping_rows(curated_broad, {"CL:1": True})[0]["confidence"]
+    assert broad_conf < exact_conf
+
+
+def test_build_mapping_rows_uncertain_caps_confidence():
+    curated = [
+        {
+            "abbreviation": "X",
+            "subject_label": "X",
+            "cl_id": "CL:1",
+            "cl_label": "x",
+            "match_type": "Exact",
+            "uncertain": True,
+        }
+    ]
+    rows = se.build_mapping_rows(curated, {"CL:1": True})
+    assert rows[0]["confidence"] == se.UNCERTAIN_CONFIDENCE_CAP
+
+
+def test_build_mapping_rows_evidence_override_takes_precedence():
+    curated = [
+        {
+            "abbreviation": "X",
+            "subject_label": "X",
+            "cl_id": "CL:1",  # confirmed in the TSV lookup...
+            "cl_label": "x",
+            "match_type": "Exact",
+            "evidence_override": "no_marker_axiom",  # ...but match wasn't marker-based
+        }
+    ]
+    rows = se.build_mapping_rows(curated, {"CL:1": True})
+    assert rows[0]["confidence"] == 0.55
+
+
+def test_build_mapping_rows_note_prepended_to_comment():
+    curated = [
+        {
+            "abbreviation": "X",
+            "subject_label": "X",
+            "cl_id": "CL:1",
+            "cl_label": "x",
+            "match_type": "Exact",
+            "note": "Custom caveat text.",
+        }
+    ]
+    rows = se.build_mapping_rows(curated, {"CL:1": True})
+    assert rows[0]["comment"].startswith("Custom caveat text.")
+
+
+def test_build_mapping_rows_cardinality_n_to_1():
+    curated = [
+        {
+            "abbreviation": "A",
+            "subject_label": "A",
+            "cl_id": "CL:SHARED",
+            "cl_label": "shared",
+            "match_type": "Exact",
+        },
+        {
+            "abbreviation": "B",
+            "subject_label": "B",
+            "cl_id": "CL:SHARED",
+            "cl_label": "shared",
+            "match_type": "Exact",
+        },
+    ]
+    rows = se.build_mapping_rows(curated, {"CL:SHARED": True})
+    assert all(r["mapping_cardinality"] == "n:1" for r in rows)
+
+
+def test_build_mapping_rows_subject_id_format():
+    curated = [
+        {
+            "abbreviation": "Basophil (PBMC)",
+            "subject_label": "Basophil",
+            "cl_id": "CL:1",
+            "cl_label": "x",
+            "match_type": "Exact",
+        }
+    ]
+    rows = se.build_mapping_rows(curated, {"CL:1": True})
+    assert rows[0]["subject_id"] == "SOULCAP:Basophil_(PBMC)"
+
+
+# --------------------------------------------------------------------------- #
+# write_sssom
+# --------------------------------------------------------------------------- #
+def test_write_sssom_creates_valid_file(tmp_path):
+    rows = se.build_mapping_rows(
+        [
+            {
+                "abbreviation": "X",
+                "subject_label": "X cell",
+                "cl_id": "CL:1",
+                "cl_label": "x cell",
+                "match_type": "Exact",
+            }
+        ],
+        {"CL:1": True},
+    )
+    out_path = tmp_path / "nested" / "out.sssom.tsv"
+    se.write_sssom(out_path, rows)
+    assert out_path.exists()
+    content = out_path.read_text(encoding="utf-8")
+    assert "curie_map" in content
+    assert "SOULCAP:X" in content
+    assert "subject_id" in content
+
+
+# --------------------------------------------------------------------------- #
+# CURATED_MAPPINGS sanity checks (guards against typos when hand-editing)
+# --------------------------------------------------------------------------- #
+def test_curated_mappings_all_have_required_fields():
+    required = {"abbreviation", "subject_label", "cl_id", "cl_label", "match_type"}
+    for entry in se.CURATED_MAPPINGS:
+        assert required <= entry.keys()
+        assert entry["match_type"] in ("Exact", "Broad")
+        assert entry["cl_id"].startswith("CL:")
+
+
+def test_curated_mappings_build_without_error():
+    rows = se.build_mapping_rows(se.CURATED_MAPPINGS, {})
+    assert len(rows) == len(se.CURATED_MAPPINGS)
+
+
+# --------------------------------------------------------------------------- #
+# CLI
+# --------------------------------------------------------------------------- #
+def test_main_missing_tsv(tmp_path, capsys):
+    rc = se.main(
+        ["--tsv", str(tmp_path / "missing.tsv"), "--out", str(tmp_path / "out.tsv")]
+    )
+    assert rc == 1
+    assert "not found" in capsys.readouterr().err
+
+
+def test_main_writes_output(tmp_path, capsys):
+    tsv = _make_tsv([_row("CL:0000623", "True")], tmp_path)
+    out_path = tmp_path / "out.sssom.tsv"
+    rc = se.main(["--tsv", str(tsv), "--out", str(out_path)])
+    assert rc == 0
+    assert out_path.exists()
+    out = capsys.readouterr().out
+    assert "Wrote" in out
diff --git a/uv.lock b/uv.lock
index bce4d3c..effb905 100644
--- a/uv.lock
+++ b/uv.lock
@@ -16,6 +16,61 @@ resolution-markers = [
     "python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'",
 ]
 
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+[[package]]
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+]
+
+[[package]]
+name = "arrow"
+version = "1.4.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "python-dateutil" },
+    { name = "tzdata" },
+]
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 [[package]]
 name = "ast-serialize"
 version = "0.6.0"
@@ -57,6 +112,116 @@ wheels = [
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