diff --git a/.claude/settings.local.json b/.claude/settings.local.json new file mode 100644 index 00000000..4c48850a --- /dev/null +++ b/.claude/settings.local.json @@ -0,0 +1,46 @@ +{ + "permissions": { + "allow": [ + "Bash(ls:*)", + "Bash(cmake --build:*)", + "Bash(ctest:*)", + "Bash(cmake:*)", + "Bash(python3:*)", + "Bash(ninja -t targets:*)", + "Bash(git rm:*)", + "Bash(tar:*)", + "Bash(test:*)", + "Bash(git commit:*)", + "Bash(git push:*)", + "Bash(/Users/mjackson/Workspace5/DREAM3D-Build/NX-Com-Qt69-Vtk95-Rel/Bin/SimplnxCoreUnitTest:*)", + "Bash(/opt/local/cmake-3.30.3-macos-universal/CMake.app/Contents/bin/cmake:*)", + "Bash(for f in segment_features_neighbor_scheme_test.tar.gz segment_features_test_data.tar.gz)", + "Bash(do /opt/local/cmake-3.30.3-macos-universal/CMake.app/Contents/bin/cmake -E tar xzf \"$f\")", + "Bash(done)", + "Bash(for f in 6_5_test_data_1_v2.tar.gz segment_features_test_data.tar.gz 6_6_ebsd_segment_features.tar.gz segment_features_neighbor_scheme_test.tar.gz)", + "Bash(do echo \"Extracting $f...\")", + "Bash(echo:*)", + "Bash(for f in 6_5_test_data_1_v2.tar.gz segment_features_test_data.tar.gz segment_features_neighbor_scheme_test.tar.gz)", + "Bash(do tar -xzf \"$f\")", + "Bash(/Users/mjackson/Workspace5/DREAM3D-Build/NX-Com-Qt69-Vtk95-Rel/Bin/OrientationAnalysisUnitTest:*)", + "Bash(xargs sed:*)", + "Bash(grep:*)", + "Bash(git status:*)", + "Bash(git add:*)", + "Bash(git push:*)", + "Bash(tee:*)", + "Bash(git mv:*)", + "Bash(perl -pe:*)", + "Bash(find:*)", + "Bash(perl -pi -e:*)", + "Bash(perl -pi -e 's/k_TypeName = \"\"AbstractNodeGeometry0D\"\"/k_TypeName = \"\"INodeGeometry0D\"\"/g':*)", + "Bash(gh pr view:*)", + "Bash(/opt/local/bin/gh pr view:*)", + "WebFetch(domain:github.com)", + "Bash(git checkout:*)" + ], + "deny": [ + "Bash(rm -rf *)" + ] + } +} diff --git a/CMakeLists.txt b/CMakeLists.txt index d6071fd0..23f150e8 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -37,7 +37,7 @@ option(EbsdLib_BUILD_H5SUPPORT "Build H5Support Library" OFF) # set project's name -project(EbsdLibProj VERSION 2.4.0) +project(EbsdLibProj VERSION 3.0.0) # Request C++17 standard, using new CMake variables. diff --git a/Code_Review/coloring_schemes_vs_mtex.md b/Code_Review/coloring_schemes_vs_mtex.md new file mode 100644 index 00000000..55501c52 --- /dev/null +++ b/Code_Review/coloring_schemes_vs_mtex.md @@ -0,0 +1,420 @@ +# EbsdLib IPF Coloring Schemes vs. MTEX + +A working document tracking how EbsdLib's IPF (Inverse Pole Figure) color +keys are defined and how they match or diverge from MTEX's equivalents. +Add to this as new classes / keys / convention questions come up. + +Audience: maintainers reviewing why two visually similar IPF triangles do +not produce identical pixels. Goal: nobody has to re-derive the same math +twice. + +--- + +## TSL color key + +### The conceptual goal + +Both EbsdLib and MTEX expose a "TSL" color key whose intent is the +familiar EBSD vendor color scheme: pure red at the [0001]/[001] +fundamental-zone corner, green and blue at the other two corners of the +standard stereographic triangle, with a soft white-ish highlight near the +interior. The name "TSL" comes from EDAX/TSL OIM Analysis software, which +popularized the convention. + +The two implementations agree at the fundamental-zone corners (the corner +test in `IPFLegendTest::CAxisIsRed` passes for every Laue class), but +they use materially different math to color the interior of the +triangle. They are NOT pixel-equivalent — even for cubic m-3m where they +look the closest, individual pixel values can differ by a few percent. + +### EbsdLib's TSL formula + +File: `Source/EbsdLib/Utilities/TSLColorKey.cpp` + +The 3-arg overload (called by `LaueOps::computeIPFColor` per pixel): + +```cpp +Vec3 TSLColorKey::direction2Color(double eta, double chi, + const Vec3& angleLimits) const { + double etaMin = angleLimits[0]; + double etaMax = angleLimits[1]; + double chiMax = angleLimits[2]; + + double r = 1.0 - chi / chiMax; + double b = std::abs(eta - etaMin) / (etaMax - etaMin); + double g = 1.0 - b; + g *= chi / chiMax; + b *= chi / chiMax; + + r = std::sqrt(r); + g = std::sqrt(g); + b = std::sqrt(b); + + double maxVal = std::max({r, g, b}); + if(maxVal > 0.0) { r /= maxVal; g /= maxVal; b /= maxVal; } + + return {clamp01(r), clamp01(g), clamp01(b)}; +} +``` + +Inputs are `(eta, chi)` — the polar coordinates of the FZ-folded crystal +direction in the standard stereographic triangle — plus the angle limits +of that triangle for the active Laue class. + +Behavior at the corners: +- `chi = 0` → c-axis vertex → `r = 1, g = 0, b = 0` → red. +- `chi = chiMax, eta = etaMin` → green vertex → `r = 0, b = 0, g → 1` → green after normalize. +- `chi = chiMax, eta = etaMax` → blue vertex → `r = 0, g = 0, b → 1` → blue after normalize. + +Interior behavior: +- The `sqrt` of each channel is a perceptual brightness lift. +- The `max-normalize` step pushes the brightest channel up to 1 every + pixel, so colors saturate quickly. This is what gives the + "white-ish" highlight near the triangle's incenter — the spot where + all three of `r`, `g`, `b` happen to be similar. + +The 0-arg overload `direction2Color(const Vec3& direction)` falls back +to a hardcoded `m_DefaultAngleLimits = {0, π/4, acos(1/√3)}` (cubic m-3m +limits). Important for the gridded code path — see "Gridded rendering" +below. + +Reference for the corner color test: `IPFLegendTest::CAxisIsRed` at +`Source/Test/IPFLegendTest.cpp`. + +### MTEX's TSL formula + +File: `mtex-6.1.0/plotting/directionColorKeys/TSLDirectionKey.m` + +```matlab +function rgb = direction2color(dM, h, varargin) + h = h.project2FundamentalRegion(dM.sym); + center = dM.sR.center; + v = dM.sR.vertices; + if ~isempty(v), v = v(1); else, v = dM.sym.aAxisRec; end + + [radius, rho] = polarCoordinates(dM.sR, h, center, v); + + radius = 0.5 + radius./2; % "white center" (but see below) + v = vector3d('rho', rho, 'theta', radius.*pi); + v = dM.colorPostRotation * v; + + rgb = ar2rgb(mod(v.rho./2./pi, 1), v.theta./pi, ... + get_option(varargin,'grayValue',1), 'noHueCorrection'); +end +``` + +This is a polar / HSL scheme — fundamentally different from EbsdLib's +chi-eta formula: + +1. `polarCoordinates(sR, v, center, ref)` returns `(radius, rho)` where + `radius` is normalized distance from the FZ centerpoint to the FZ + boundary along the line through `v`, and `rho` is the azimuthal angle + of `v` around the centerpoint. +2. `radius = 0.5 + radius./2` remaps `[0, 1]` to `[0.5, 1.0]`. +3. `ar2rgb` interprets the polar coordinates as HSL: hue from `rho`, + lightness from the remapped radius (with default `grayValue=1` this + simplifies to `L = radius`, `S = 1`). +4. Convert HSL → HSV → RGB. + +Behavior at the corners and boundary: +- FZ center → `radius=0` → remapped `L=0.5` → fully saturated color of + some specific hue (whichever hue corresponds to the chosen `ref` + direction). +- FZ boundary → `radius=1` → remapped `L=1` → **white** in HSL, so + white pixels along the FZ perimeter. +- The hue (`rho`) cycles a full 360° around the FZ — which is why MTEX + legends can show a complete rainbow around the boundary. + +Note: the inline comment `"% white center"` in `TSLDirectionKey.m` is +misleading — the math actually produces white at the BOUNDARY and +saturated color in the center. This matches the rendered MTEX legends. + +`ar2rgb.m` also applies an optional hue-correction step that biases the +hue distribution to give roughly equal area to red, green, and blue +regions of the wheel; EbsdLib's TSLColorKey has no equivalent. + +### Why they don't agree pixel-for-pixel + +The two schemes share the *same vertex colors* (red / green / blue at +the three FZ corners) but use **different interior interpolation**: + +| Property | EbsdLib TSL | MTEX TSL | +| ---------------------------- | --------------------------------------------- | ----------------------------------------------- | +| Inputs | `(eta, chi)` | `(rho, radius)` — polar in the FZ | +| Brightness control | `sqrt(r), sqrt(g), sqrt(b)` then max-normalize| HSL `L = 0.5 + radius/2` | +| Hue around boundary | Three corner-anchored linear ramps | Smooth full hue cycle (HSV) | +| Center of FZ | Pure red (chi=0) | Saturated color of one specific hue (not red) | +| Triangle interior | Brightest near the triangle incenter | Brightest along the FZ boundary | +| Hue correction | None | Optional Gaussian-bumpy hue mapping | + +Practically, the two visualizations agree on coarse interpretations +("orange means roughly between [001] and [011]") but disagree at the +pixel level. For visual side-by-side comparison the schemes look +broadly similar for cubic m-3m, hex 6/mmm, etc., where the FZ is small +and the chi-eta formula approximates a polar map. They look very +different for Triclinic where the FZ is the entire upper hemisphere and +the chi-eta formula has more space to disagree with a polar/HSL scheme. + +--- + +## Per-Laue-class status + +Status legend: +- ✅ matches MTEX visually (small numerical differences only) +- ⚠️ recognizable as the same scheme but visibly different +- ❌ fundamentally different appearance + +| Rotation PG | Class | EbsdLib TSL ↔ MTEX TSL | Notes | +| ----------- | ----------------- | ---------------------- | ----- | +| 432 | Cubic m-3m | ✅ | Standard cubic IPF triangle. Both schemes give R/G/B at corners; interior gradients differ slightly but the visual impression matches. | +| 23 | Cubic m-3 | ✅ | Same triangle as 432 in EbsdLib (same direction triplets after the 4th-{011}-direction typo fix in CubicLowOps). | +| 622 | Hexagonal 6/mmm | ✅ | After the X\|\|a\* convention fix, vertex labels match. Interior coloring close. | +| 6 | Hexagonal 6/m | ⚠️ | EbsdLib enumerates 6-fold orbit; vertex labels (`<10-10>`/`<11-20>`) match MTEX. Interior coloring close. | +| 422 | Tetragonal 4/mmm | ✅ | | +| 4 | Tetragonal 4/m | ⚠️ | After renaming third PF from `<010>` to `<110>` and enumerating the 4-fold orbit. | +| 32 | Trigonal -3m | ⚠️ | | +| 3 | Trigonal -3 | ⚠️ | The two prismatic PFs share the same 3-fold orbit under -3 — both PFs render identically. | +| 222 | Orthorhombic mmm | ✅ | | +| 2 | Monoclinic 2/m | ✅ | | +| 1 | Triclinic -1 | ❌ | Fundamentally different (see below). | + +### Triclinic divergence + +Triclinic is the loudest disagreement and worth its own subsection. + +**MTEX FZ choice.** `fundamentalSector.m`, case 2 sets `N = +Z`, so the +fundamental region for `-1` is the **upper hemisphere half-disk**. The +inversion-equivalent of any direction in the lower hemisphere is its +upper-hemisphere antipode, so MTEX folds and renders only the upper half. + +**EbsdLib FZ choice.** EbsdLib's Triclinic SST limits are +`(etaMin=0, etaMax=π, chiMax=π/2)`. The chi-eta formula uses +`|eta - etaMin| = |eta|`, which makes the result symmetric across the +y=0 line of the stereographic disk. Combined with the legend renderer +filtering only `|x|² + |y|² ≤ 1` for triclinic (`generateEntirePlane=true`), +the **full disk** is rendered with mirrored coloring above and below +y=0. + +**Visible result.** MTEX shows a half-disk with a smooth HSV cycle +around its perimeter, white near the boundary, fully-saturated single +hue at the center. EbsdLib shows a full disk with red at the center, +greens/blues spreading outward, and a top/bottom mirror symmetry across +y=0. + +These are not equivalent renderings of the same scheme. They are +different schemes applied to different fundamental regions. Matching +MTEX's Triclinic from EbsdLib would require: +1. Restricting the legend renderer to the upper hemisphere half-disk + (or accepting both renders as legitimate). +2. Adding a polar-coordinate IPF color key (analogous to MTEX's + `TSLDirectionKey`) so the interior coloring uses HSL/HSV instead of + the chi-eta formula. + +--- + +## Gridded rendering + +EbsdLib's `GriddedColorKey` is a decorator that wraps any `IColorKey` +and provides MTEX-style flat-shaded 1° grid cells. After the bug fixes +in commits `2c20533`, `89aca99`, and `88ad1f9`, the gridded TSL output +matches the per-pixel TSL output across all 11 unique Laue classes: + +- The 3-arg overload now honors the caller's `angleLimits` (was using + cubic-default limits for every class). +- `eta` is passed through unchanged (was being wrapped to `[0, 2π]`, + which broke negative-`etaMin` Laue classes Trig-3 and Trig-3m). +- Snapped `chi` is clamped to `[0, angleLimits[2]]` (cubic m-3m has + variable `chiMax(eta)`; the snap could push `chi` past the chiMax + passed in, producing NaN red along the curved boundary). +- Snapped `eta` is NOT clamped (clamping it broke Triclinic — the lower + hemisphere of the legend disk relies on negative eta passing through + to the `|eta|` symmetry of the chi-eta formula). + +Regression coverage: `GriddedColorKey::HonorsAngleLimitsIn3ArgOverload`, +`GriddedColorKey::HandlesNegativeEta`, +`GriddedColorKey::BoundarySnapDoesNotProduceNaN`, +`GriddedColorKey::TriclinicNegativeEtaProducesColor`. + +The GriddedColorKey output is therefore a faithful 1° flat-shading of +EbsdLib's TSL formula, but it does **not** match MTEX's TSL output any +better than the per-pixel version does — because the underlying color +math is still the EbsdLib chi-eta formula, not MTEX's polar/HSL formula. + +--- + +## Validation against EDAX TSL reference (`EDAX_TSL_IPF.bmp`) + +Test data and reference output supplied by EDAX: +- Input: `Data/ipf_color_tests/AllLaueClasses_RandO.ang` — 96×100 grid, + one orientation per row, 12 phases (one per Laue class) repeated + across 8-pixel-wide vertical strips. +- TSL reference: `Data/ipf_color_tests/EDAX_TSL_IPF.bmp` (533×511, + ~5.33× upscaled from the .ang grid). +- PUCM reference (separate scheme, future work): + `Data/ipf_color_tests/EDAX_PUCM_IPF.bmp`. + +Comparison procedure: + +```bash +make_ipf Data/ipf_color_tests/AllLaueClasses_RandO.ang /tmp/ebsdlib.png +# nearest-downsample EDAX_TSL_IPF.bmp to 96x100 with PIL/etc. +# diff against /tmp/ebsdlib.png pixelwise +``` + +Per-Laue-class result (mean per-channel diff out of 255, full strip): + +| Phase | EDAX_TSL ↔ EbsdLib | EDAX_TSL ↔ MTEX | +| ----- | ------------------ | ---------------- | +| dihex 6/mmm | **0.42** | 18.28 | +| triclinic | 0.57 | 91.32 | +| cubic m-3m | 0.64 | 14.05 | +| hex 6/m | 0.91 | 11.02 | +| ditet 4/mmm | 1.02 | 14.42 | +| mono b | 1.02 | 39.60 | +| ortho mmm | 1.28 | 13.86 | +| tetrahedral m-3 | 1.29 | 20.03 | +| tet 4/m | 1.49 | 14.51 | +| trig -3 | 1.81 | 21.50 | +| ditrig -3m | 2.65 | 71.76 | +| **mono c** | **31.82** | 35.71 | +| **whole image** | **3.74**, only 5.8 % of pixels differ at all | 30.51 | + +Headline: **EbsdLib's TSL key matches EDAX's TSL output to within +sub-pixel accuracy on 11 of 12 Laue classes**. The remaining ~2% +"mismatch floor" on those 11 phases is consistent with antialiasing / +quantization from the 5.33× non-integer downsample of the EDAX BMP and +is not a real coloring difference. MTEX disagrees with EDAX as +documented above (polar-HSL vs chi-eta TSL formulas). + +Mono-c is the one phase where EbsdLib disagrees with EDAX in a way +that's clearly not just downsample noise — added to "Open questions" +below. + +--- + +## PUCM color key (perceptually uniform, EDAX-style) + +EbsdLib now ships a third IPF color key, `PUCMColorKey`, ported from +William Lenthe's BSD-3 reference implementation +(`wlenthe/crystallography/orientation_coloring.hpp`, vendored at +`Source/EbsdLib/Utilities/wlenthe_orientation_coloring.hpp`). +PUCMColorKey is a thin dispatch wrapper that selects the correct +wlenthe entry-point per Laue class. + +The implementation follows: +- Nolze, G. and Hielscher, R. *"Orientations Perfectly Colors."* + J. Appl. Crystallogr. 49.5 (2016): 1786–1802. +- EDAX OIM Analysis "perceptually uniform" IPF color scheme (PUCM): + see . + +`make_ipf` accepts a third optional argument `tsl|pucm` to pick the +color key. PUCM constructs a per-rotation-point-group color key on +each LaueOps before rendering. + +PUCM is also wired into the legend pipeline: every Laue class now +emits four EbsdLib legend variants per `IPFLegendTest` run: + +``` +/tsl_ebsdlib_ipf_legend.png +/tsl_gridded_ebsdlib_ipf_legend.png +/nh_ebsdlib_ipf_legend.png +/nh_gridded_ebsdlib_ipf_legend.png +/pucm_ebsdlib_ipf_legend.png <-- new +/pucm_gridded_ebsdlib_ipf_legend.png <-- new +``` + +The PUCM legends use the same `LaueOps::generateIPFTriangleLegend` +machinery as TSL/NH; the rendering loop calls `generateIPFColor` per +pixel, which routes through the active `m_ColorKey`. Setting the key +to a `PUCMColorKey(rpg)` instance for the corresponding Laue class +just before rendering produces the perceptually uniform legend +without any other code path changes. + +### Validation against EDAX PUCM reference (`EDAX_PUCM_IPF.bmp`) + +Same input as the TSL validation (AllLaueClasses_RandO.ang, 96×100 +grid, 12 phases). EDAX renders this with their PUCM color scheme and +ships it alongside the test data. + +| Phase | EDAX_PUCM ↔ EbsdLib_PUCM mean diff | +| ----- | ----------------- | +| dihex 6/mmm | **0.47** | +| triclinic | 0.47 | +| cubic m-3m | 0.87 | +| ortho mmm | 1.19 | +| trig -3 | 1.25 | +| ditrig -3m | 1.30 | +| mono b | 1.79 | +| hex 6/m | 1.91 | +| tetrahedral m-3 | 2.42 | +| tet 4/m | 10.05 | +| ditet 4/mmm | 11.78 | +| **mono c** | **74.67** | +| **whole image** | **9.01**, 26.5% of pixels differ at all | + +9 of 12 Laue classes match EDAX PUCM to within sub-pixel accuracy +(mean diff < 3 / 255). Mono-c is the same outlier we saw with the TSL +comparison and is therefore not a PUCM-specific issue — see Open +Questions. + +`tet 4/m` and `ditet 4/mmm` have moderate divergences (mean ≈ 10–12). +Plausible causes: small fundamental-sector convention differences +between wlenthe's reference and what EDAX ships, or a subtle dispatch +issue in `PUCMColorKey` for those specific Laue classes. Worth +investigating; not yet diagnosed. + +--- + +## Open questions + +(Add as they come up.) + +- **Monoclinic c-setting (`mono c`, point group `112/m`) — EbsdLib vs + EDAX disagree** by mean=31.82 / max=244 (TSL) and mean=74.67 / max=255 + (PUCM) over ~46–100% of pixels in the AllLaueClasses_RandO comparison. + Every other Laue class matches EDAX to within ~3 mean diff for both + color keys. The fact that mono-c diverges in BOTH TSL and PUCM + comparisons rules out a color-formula bug — strongly indicates a + b-setting vs c-setting axis convention mismatch in EbsdLib's + MonoclinicOps phase mapping or Euler-angle interpretation. +- **Tetragonal-low (4/m) and tetragonal-high (4/mmm) PUCM** have moderate + divergence vs EDAX_PUCM (mean ≈ 10–12) while the same classes match + exactly under TSL (mean ≈ 1–2). Suggests the wlenthe dispatch or the + fundamental-sector convention is subtly different for these two + classes specifically. The other 9 Laue classes are clean. + +- The visual hex `<10-10>` and `<11-20>` PF positions match MTEX after + the X\|\|a\* convention fix, but the *interior* coloring of the + prismatic-orbit pole figures might still differ by a constant 30° + rotation in some classes. Worth a closer look. +- For Triclinic: do we want EbsdLib to also restrict to the upper + hemisphere (matches MTEX, breaks back-compat with old EbsdLib + outputs), or keep the full-disk render and document it as a + deliberate divergence? +- The `NolzeHielscherColorKey` should be the right comparand for MTEX's + `ipfHSVKey`. We have output for both; the side-by-side comparison + for non-cubic classes should be revisited now that the GriddedColorKey + bugs are fixed. + +--- + +## How to regenerate the comparison + +```bash +cd /Users/mjackson/Workspace7/DREAM3D-Build/ebsdlib-Release +Bin/EbsdLibUnitTest "ebsdlib::IPFLegendTest::MTEXCompare_AllLaueClasses" +# Then in MATLAB: +# run('Code_Review/compare_ipf_legends_all_laue.m') +``` + +Output lands in `/Testing/Temporary/IPFComparison//`: +- `tsl_ebsdlib_ipf_legend.png` — per-pixel TSL +- `tsl_gridded_ebsdlib_ipf_legend.png` — 1° gridded TSL +- `nh_ebsdlib_ipf_legend.png` — per-pixel Nolze-Hielscher +- `nh_gridded_ebsdlib_ipf_legend.png` — 1° gridded NH +- `tsl_mtex_ipf_legend.png` — MTEX `ipfTSLKey` +- `nh_mtex_ipf_legend.png` — MTEX `ipfHSVKey` + +The TSL pair is *intended* to match per-class within "broadly similar" +visual quality, with the documented Triclinic exception. The NH/HSV +pair is the more rigorous match (both use polar HSV-cycle schemes). diff --git a/Code_Review/compare_ipf_legends_all_laue.m b/Code_Review/compare_ipf_legends_all_laue.m new file mode 100644 index 00000000..b0c307cf --- /dev/null +++ b/Code_Review/compare_ipf_legends_all_laue.m @@ -0,0 +1,97 @@ +% compare_ipf_legends_all_laue.m +% +% Companion to EbsdLib's IPFLegendTest::MTEXCompare_AllLaueClasses. +% +% For every Laue class in IPFComparison/, writes two MTEX legends so the +% pairs can be compared apples-to-apples against the EbsdLib outputs: +% ebsdlib_ipf_legend_tsl.png vs mtex_ipf_legend_tsl.png +% ebsdlib_ipf_legend_nh.png vs mtex_ipf_legend_hsv.png +% The TSL pair uses MTEX's ipfTSLKey; the NH pair uses MTEX's ipfHSVKey, +% which is the Nolze-Hielscher-style HSV scheme that EbsdLib's +% NolzeHielscherColorKey is modeled on. +% +% Usage: +% 1. Build and run the EbsdLib unit test first: +% cd .../DREAM3D-Build/ebsdlib-Release && \ +% Bin/EbsdLibUnitTest "ebsdlib::IPFLegendTest::MTEXCompare_AllLaueClasses" +% 2. Edit `baseDir` below to point at the IPFComparison directory +% 3. Run this script in MATLAB (MTEX must be on the path: startup_mtex) + + +baseDir = '/Users/mjackson/Workspace7/DREAM3D-Build/ebsdlib-Release/Testing/Temporary/IPFComparison'; + +if ~exist(baseDir, 'dir') + error('baseDir does not exist: %s\nRun the IPFLegendTest MTEXCompare first.', baseDir); +end + +setMTEXpref('xAxisDirection', 'east'); +setMTEXpref('zAxisDirection', 'outOfPlane'); + +% Map EbsdLib rotation point group -> MTEX crystalSymmetry. +% Hexagonal/trigonal use X||a to match EbsdLib's X||a* after the 30-degree +% reciprocal-basis reinterpretation. (MTEX's default is X||a*; using X||a +% here rotates MTEX 30 degrees to match EbsdLib.) +laueMap = containers.Map(); +laueMap('432') = crystalSymmetry('m-3m'); +laueMap('23') = crystalSymmetry('m-3'); +laueMap('622') = crystalSymmetry('6/mmm', [1 1 1.6], 'X||a', 'Z||c*'); +laueMap('6') = crystalSymmetry('6/m', [1 1 1.6], 'X||a', 'Z||c*'); +laueMap('422') = crystalSymmetry('4/mmm'); +laueMap('4') = crystalSymmetry('4/m'); +laueMap('32') = crystalSymmetry('-3m', [1 1 1.6], 'X||a', 'Z||c*'); +laueMap('3') = crystalSymmetry('-3', [1 1 1.6], 'X||a', 'Z||c*'); +laueMap('222') = crystalSymmetry('mmm'); +laueMap('2') = crystalSymmetry('2/m'); +laueMap('1') = crystalSymmetry('-1'); + +entries = dir(baseDir); +for e = 1:numel(entries) + if ~entries(e).isdir, continue; end + name = entries(e).name; + if name(1) == '.', continue; end + if ~isKey(laueMap, name) + fprintf('skipping %s (not in laueMap)\n', name); + continue; + end + + classDir = fullfile(baseDir, name); + cs = laueMap(name); + + % --- TSL pair (compare ebsdlib_ipf_legend_tsl.png vs mtex_ipf_legend_tsl.png) --- + try + keyTSL = ipfTSLKey(cs); + catch + warning('ipfTSLKey not available for %s; falling back to ipfHKLKey', name); + keyTSL = ipfHKLKey(cs); + end + fT = figure('Visible', 'off', 'Position', [100 100 600 600]); + plot(keyTSL); + title(sprintf('MTEX ipfTSLKey %s', name)); + outTSL = fullfile(classDir, 'tsl_gridded_mtex_ipf_legend.png'); + outDir = fileparts(outTSL); + if ~isfolder(outDir) + mkdir(outDir); + end + %exportgraphics(outTSL, outTSL, 'Resolution', 72); + saveas(fT, outTSL); + close(fT); + fprintf('wrote %s\n', outTSL); + + % --- NH/HSV pair (compare ebsdlib_ipf_legend_nh.png vs mtex_ipf_legend_hsv.png) --- + keyHSV = ipfHSVKey(cs); + fH = figure('Visible', 'off', 'Position', [100 100 600 600]); + plot(keyHSV); + title(sprintf('MTEX ipfHSVKey %s', name)); + outHSV = fullfile(classDir, 'nh_gridded_mtex_ipf_legend.png'); + %exportgraphics(outHSV, outHSV, 'Resolution', 72); + saveas(fH, outHSV); + close(fH); + fprintf('wrote %s\n', outHSV); +end + +fprintf('\nDone. For each Laue class directory there should now be:\n'); +fprintf(' /ebsdlib_ipf_legend_tsl.png EbsdLib TSL legend\n'); +fprintf(' /ebsdlib_ipf_legend_nh.png EbsdLib Nolze-Hielscher legend\n'); +fprintf(' /mtex_ipf_legend_tsl.png MTEX ipfTSLKey legend\n'); +fprintf(' /mtex_ipf_legend_hsv.png MTEX ipfHSVKey legend\n'); +fprintf('Compare each pair (TSL <-> TSL, NH <-> HSV) side-by-side.\n'); diff --git a/Code_Review/compare_pole_figure_mtex.m b/Code_Review/compare_pole_figure_mtex.m new file mode 100644 index 00000000..2b97375e --- /dev/null +++ b/Code_Review/compare_pole_figure_mtex.m @@ -0,0 +1,57 @@ +% compare_pole_figure_mtex.m +% +% Compares the pole figure produced by EbsdLib's ODFTest against MTEX. +% Expects a CSV of Bunge Euler angles (phi1, Phi, phi2) in degrees. +% +% Usage: edit csvPath below to point at the file written by ODFTest, then run. +% +% The ODFTest writes the CSV to: +% /Testing/Temporary/ODFTest_Eulers_deg.csv +% e.g. /Users/mjackson/Workspace7/DREAM3D-Build/ebsdlib-Release/Testing/Temporary/ODFTest_Eulers_deg.csv + +csvPath = '/Users/mjackson/Workspace7/DREAM3D-Build/ebsdlib-Release/Testing/Temporary/ODFTest_Eulers_deg.csv'; + +% Load Euler angles +T = readtable(csvPath); +eulers_deg = [T.phi1, T.Phi, T.phi2]; +fprintf('Loaded %d Euler triples from %s\n', size(eulers_deg,1), csvPath); +fprintf('First 3 rows (deg):\n'); +disp(eulers_deg(1:min(3,end), :)); + +% Crystal symmetry: hexagonal high (6/mmm). +% Use X||a (real-space a-axis along X) to match EbsdLib's hexagonal +% direction convention in HexagonalOps.cpp. EbsdLib's (10-10) pole uses +% direction (sqrt(3)/2, 1/2, 0) and (2-1-10) uses (1, 0, 0), which is the +% X||a convention. MTEX's default is X||a* (reciprocal), which swaps the +% labels of the two prismatic pole figures — that is why EbsdLib's (10-10) +% looks like MTEX's (2-1-10) and vice versa. Switching MTEX to X||a here +% aligns the labels. +cs = crystalSymmetry('6/mmm', [1 1 1.6], 'X||a', 'Z||c*'); +% Specimen symmetry: triclinic (no sample symmetry) +ss = specimenSymmetry('1'); + +% Build orientations (Bunge convention is MTEX default) +ori = orientation.byEuler(eulers_deg(:,1)*degree, eulers_deg(:,2)*degree, eulers_deg(:,3)*degree, cs, ss); + +% MTEX default plotting: X east (right), Y north (up), Z outOfPlane. +% These match EbsdLib's pole figure convention after this fix. +setMTEXpref('xAxisDirection', 'east'); +setMTEXpref('zAxisDirection', 'outOfPlane'); + +% Miller indices for the pole figures EbsdLib shows: (0001), (10-10), (2-1-10) +h = [ ... + Miller(0, 0, 0, 1, cs), ... + Miller(1, 0,-1, 0, cs), ... + Miller(2,-1,-1, 0, cs)]; + +% Plot pole figures as scatter of individual orientations (like EbsdLib discrete PF) +figure('Name', 'MTEX pole figures for EbsdLib ODFTest Euler sample'); +plotPDF(ori, h, 'MarkerSize', 3, 'upper', 'projection', 'eangle', 'complete'); +title('MTEX: (0001), (10-10), (2-1-10) for EbsdLib ODFTest sample'); + +% Print a short diagnostic +fprintf('\n'); +fprintf('Expected for Bunge (180, 90, 0):\n'); +fprintf(' c-axis [0001] in sample frame = +Y, so (0001) cluster at 12:00 (top).\n'); +fprintf(' Centrosymmetric 6/mmm: antipodal [000-1] at 6:00 (bottom) also appears.\n'); +fprintf(' The (0001) pole figure should show clusters at 12:00 and 6:00.\n'); diff --git a/Code_Review/compare_pole_figures_all_laue.m b/Code_Review/compare_pole_figures_all_laue.m new file mode 100644 index 00000000..7c88f325 --- /dev/null +++ b/Code_Review/compare_pole_figures_all_laue.m @@ -0,0 +1,118 @@ +% compare_pole_figures_all_laue.m +% +% Companion to EbsdLib's PoleFigureLaueComparisonTest (Source/Test/PoleFigureLaueComparisonTest.cpp). +% +% For every Laue class listed in manifest.txt, reads eulers.csv, reconstructs +% the orientations in MTEX with the matching crystal symmetry, and saves +% a pole figure PNG named mtex.png next to EbsdLib's ebsdlib.png — so the two +% images can be compared side-by-side per Laue class. +% +% Usage: +% 1. Run the EbsdLib test first: +% cd .../DREAM3D-Build/ebsdlib-Release && \ +% Bin/EbsdLibUnitTest "ebsdlib::PoleFigureLaueComparisonTest::GenerateAllLaueClasses" +% 2. Edit `baseDir` below to point at the PoleFigureComparison directory +% 3. Run this script in MATLAB (MTEX must be on the path; run `startup_mtex` first) + +baseDir = '/Users/mjackson/Workspace7/DREAM3D-Build/ebsdlib-Release/Testing/Temporary/PoleFigureComparison'; + +if ~exist(baseDir, 'dir') + error('baseDir does not exist: %s\nRun the PoleFigureLaueComparisonTest first.', baseDir); +end + +% MTEX pole-figure plotting conventions (match EbsdLib after the axis fixes) +setMTEXpref('xAxisDirection', 'east'); +setMTEXpref('zAxisDirection', 'outOfPlane'); + +% Map EbsdLib rotation point group → MTEX crystalSymmetry Laue class string +% plus the 3 Miller-Bravais / Miller indices to plot. EbsdLib now uses +% X||a* for hexagonal/trigonal crystals (MTEX default). +laueMap = containers.Map(); +% cubic +laueMap('432') = struct('cs', crystalSymmetry('m-3m'), ... + 'h', {{[0 0 1], [0 1 1], [1 1 1]}}); +laueMap('23') = struct('cs', crystalSymmetry('m-3'), ... + 'h', {{[0 0 1], [0 1 1], [1 1 1]}}); +% hexagonal +laueMap('622') = struct('cs', crystalSymmetry('6/mmm', [1 1 1.6]), ... + 'h', {{[0 0 0 1], [1 0 -1 0], [2 -1 -1 0]}}); +laueMap('6') = struct('cs', crystalSymmetry('6/m', [1 1 1.6]), ... + 'h', {{[0 0 0 1], [1 0 -1 0], [1 1 -2 0]}}); +% tetragonal +laueMap('422') = struct('cs', crystalSymmetry('4/mmm'), ... + 'h', {{[0 0 1], [1 0 0], [1 1 0]}}); +laueMap('4') = struct('cs', crystalSymmetry('4/m'), ... + 'h', {{[0 0 1], [1 0 0], [1 1 0]}}); +% trigonal +laueMap('32') = struct('cs', crystalSymmetry('-3m', [1 1 1.6]), ... + 'h', {{[0 0 0 1], [0 -1 1 0], [1 -1 0 0]}}); +laueMap('3') = struct('cs', crystalSymmetry('-3', [1 1 1.6]), ... + 'h', {{[0 0 0 1], [-1 -1 2 0], [2 -1 -1 0]}}); +% orthorhombic +laueMap('222') = struct('cs', crystalSymmetry('mmm'), ... + 'h', {{[0 0 1], [1 0 0], [0 1 0]}}); +% monoclinic +laueMap('2') = struct('cs', crystalSymmetry('2/m'), ... + 'h', {{[0 0 1], [1 0 0], [0 1 0]}}); +% triclinic +laueMap('1') = struct('cs', crystalSymmetry('-1'), ... + 'h', {{[0 0 1], [1 0 0], [0 1 0]}}); + +% Discover all Laue class subdirectories +entries = dir(baseDir); +for e = 1:numel(entries) + if ~entries(e).isdir, continue; end + name = entries(e).name; + if name(1) == '.', continue; end + if ~isKey(laueMap, name) + fprintf('skipping %s (not in laueMap)\n', name); + continue; + end + + classDir = fullfile(baseDir, name); + csvPath = fullfile(classDir, 'pole_figure_input_eulers.csv'); + if ~exist(csvPath, 'file') + fprintf('skipping %s (no pole_figure_input_eulers.csv)\n', name); + continue; + end + + info = laueMap(name); + cs = info.cs; + ss = specimenSymmetry('1'); + + T = readtable(csvPath); + eulers_deg = [T.phi1, T.Phi, T.phi2]; + ori = orientation.byEuler(eulers_deg(:,1)*degree, eulers_deg(:,2)*degree, eulers_deg(:,3)*degree, cs, ss); + + % Build Miller objects for the 3 pole figures + hArr = cell(1, numel(info.h)); + for k = 1:numel(info.h) + idx = info.h{k}; + if numel(idx) == 4 + hArr{k} = Miller(idx(1), idx(2), idx(3), idx(4), cs); + else + hArr{k} = Miller(idx(1), idx(2), idx(3), cs); + end + end + h = [hArr{:}]; + + f = figure('Visible', 'off', 'Position', [100 100 700 250]); + plotPDF(ori, h, 'MarkerSize', 3, 'upper', 'projection', 'eangle', 'complete'); + ttl = sprintf('MTEX %s — Euler %.1f, %.1f, %.1f (deg)', name, eulers_deg(1,1), eulers_deg(1,2), eulers_deg(1,3)); + sgtitle(ttl); + + outPath = fullfile(classDir, 'mtex_pole_figure.png'); + outDir = fileparts(outPath); + if ~isfolder(outDir) + mkdir(outDir); + end + exportgraphics(f, outPath, 'Resolution', 72); + close(f); + fprintf('wrote %s\n', outPath); +end + +fprintf('\nDone. For each Laue class directory there should now be:\n'); +fprintf(' /eulers.csv input Euler samples\n'); +fprintf(' /ebsdlib.png EbsdLib-rendered composite\n'); +fprintf(' /mtex.png MTEX-rendered composite\n'); +fprintf('Compare the two image files per class to verify convention agreement.\n'); diff --git a/Code_Review/ebsdlib_todo.md b/Code_Review/ebsdlib_todo.md new file mode 100644 index 00000000..8f72ed3b --- /dev/null +++ b/Code_Review/ebsdlib_todo.md @@ -0,0 +1,8 @@ +# EbsdLib TODO Items + +## PUCM + +## Tighter spacing for Legend outputs. + +Some legends do not take up all the canvas space. Make changes to tighten this up. + diff --git a/Code_Review/ipf_legend_testing.md b/Code_Review/ipf_legend_testing.md new file mode 100644 index 00000000..6d5f15b6 --- /dev/null +++ b/Code_Review/ipf_legend_testing.md @@ -0,0 +1,163 @@ +# IPF Color Legend Testing + +- Each Laue class has a subsection below +- Each Laue class has 2 options: "NH" and "TSL" + +## After IPF Legends are all matching + +- Create a square grid of Euler Angles that can reasonable represent a wide range of orientations +- Treat that Square Grid like a normal EBSD Scan +- Render it with the variations of the "IPF Colors" using both MTEX and EbsdLib +- Compare the images that are produced. They should be nearly exactly the same. + + +## 1 + +### TSL Comparison + +- These will never match because MTEX uses a polar coordinate system instead of TSL's etc/chi equations +- [ ] EbsdLib Per Pixel and MTEX Match +- [ ] Ebsdlib Gridded and MTEX Match + + +### NH Gridded Comparison + +- [ ] EbsdLib Per Pixel and MTEX Match +- [ ] Ebsdlib Gridded and MTEX Match + + +## 2 + +### TSL Comparison + + +- [X] EbsdLib Per Pixel and MTEX Match +- [X] Ebsdlib Gridded and MTEX Match + +### NH Gridded Comparison + +- [ ] EbsdLib Per Pixel and MTEX Match +- [ ] Ebsdlib Gridded and MTEX Match + + +## 3 + +### TSL Comparison + + +- [X] EbsdLib Per Pixel and MTEX Match +- [X] Ebsdlib Gridded and MTEX Match + +### NH Gridded Comparison + +- [ ] EbsdLib Per Pixel and MTEX Match +- [ ] Ebsdlib Gridded and MTEX Match + +## 4 + +### TSL Comparison + + +- [X] EbsdLib Per Pixel and MTEX Match +- [X] Ebsdlib Gridded and MTEX Match + +### NH Gridded Comparison + +- [ ] EbsdLib Per Pixel and MTEX Match +- [ ] Ebsdlib Gridded and MTEX Match + +## 6 + +### TSL Comparison + + +- [X] EbsdLib Per Pixel and MTEX Match +- [X] Ebsdlib Gridded and MTEX Match + +### NH Gridded Comparison + +- [ ] EbsdLib Per Pixel and MTEX Match +- [ ] Ebsdlib Gridded and MTEX Match + + +## 23 + +### TSL Comparison + + +- [X] EbsdLib Per Pixel and MTEX Match +- [X] Ebsdlib Gridded and MTEX Match + +### NH Gridded Comparison + +- [ ] EbsdLib Per Pixel and MTEX Match +- [ ] Ebsdlib Gridded and MTEX Match + +## 32 + +### TSL Comparison + + +- [X] EbsdLib Per Pixel and MTEX Match +- [X] Ebsdlib Gridded and MTEX Match + +### NH Gridded Comparison + +- [ ] EbsdLib Per Pixel and MTEX Match +- [ ] Ebsdlib Gridded and MTEX Match + +## 222 + +### TSL Comparison + + +- [X] EbsdLib Per Pixel and MTEX Match +- [X] Ebsdlib Gridded and MTEX Match + +### NH Gridded Comparison + +- [ ] EbsdLib Per Pixel and MTEX Match +- [ ] Ebsdlib Gridded and MTEX Match + +## 422 + +### TSL Comparison + + +- [X] EbsdLib Per Pixel and MTEX Match +- [X] Ebsdlib Gridded and MTEX Match + +### NH Gridded Comparison + +- [ ] EbsdLib Per Pixel and MTEX Match +- [ ] Ebsdlib Gridded and MTEX Match + +## 432 + +### TSL Comparison + + +- [X] EbsdLib Per Pixel and MTEX Match +- [X] Ebsdlib Gridded and MTEX Match + +### NH Gridded Comparison + +- [ ] EbsdLib Per Pixel and MTEX Match +- [ ] Ebsdlib Gridded and MTEX Match + +## 622 + +### TSL Comparison + +- EbsdLib there is a single vertical pixel row that should not be in the image +- EbsdLib needs to be flipped vertically (rotate around the X Axis) and then have the labels updated to match MTEX +- MTEX is using the TSL color table but using the Gridded rendering scheme, can EbsdLib do the same, at least for the comparison? + + +- [X] EbsdLib Per Pixel and MTEX Match +- [X] Ebsdlib Gridded and MTEX Match + +### NH Gridded Comparison + +- [ ] EbsdLib Per Pixel and MTEX Match +- [ ] Ebsdlib Gridded and MTEX Match diff --git a/Code_Review/mtex_ang_to_ipf.m b/Code_Review/mtex_ang_to_ipf.m new file mode 100644 index 00000000..44c65092 --- /dev/null +++ b/Code_Review/mtex_ang_to_ipf.m @@ -0,0 +1,87 @@ +% mtex_ang_to_ipf.m +% +% Read a TSL .ang file (multi-phase OK), build the IPF-Z color map using +% MTEX's ipfTSLKey for each phase, and write a TIFF with one pixel per +% measurement so that the result can be compared 1:1 against: +% - EDAX OIM Analysis output (the .ang vendor) +% - EbsdLib `make_ipf` output +% +% Usage: edit the angPath / outPath below, then run this script in MATLAB +% with MTEX on the path (`startup_mtex` first). + +angPath = '/Users/Shared/Data/Edax_IPF_Test/AllLaueClasses_RandO.ang'; +outPath = '/tmp/AllLaueClasses_mtex.png'; + +if ~exist(angPath, 'file') + error('Input .ang not found: %s', angPath); +end + +% Match TSL/EDAX viewing convention: X east, Y north, Z out of page. +setMTEXpref('xAxisDirection', 'east'); +setMTEXpref('zAxisDirection', 'outOfPlane'); + +% Load the EBSD scan. MTEX auto-detects phases and crystal symmetries from +% the .ang header. +ebsd = EBSD.load(angPath, 'convertEuler2SpatialReferenceFrame','setting 2'); + +fprintf('Phases in scan:\n'); +for k = 1:length(ebsd.CSList) + cs = ebsd.CSList{k}; + if isa(cs, 'crystalSymmetry') + fprintf(' phase %d: %s (%s)\n', k-1, cs.mineral, cs.LaueName); + else + fprintf(' phase %d: notIndexed\n', k-1); + end +end + +% Convert to a gridded EBSD object so we can index by (row, col) and ask +% for grid dimensions directly. (MTEX 6.x changed prop.x / prop.y away.) +ebsd = gridify(ebsd); +sz = size(ebsd); +nY = sz(1); +nX = sz(2); +fprintf('Scan grid: %d cols (X) x %d rows (Y)\n', nX, nY); + +% IPF-Z reference direction +refDir = vector3d(0, 0, 1); + +% Build per-pixel RGB by querying each phase's ipfTSLKey. Iterate over the +% phaseId vector (1-based index into ebsd.CSList) and color each phase's +% pixels with its own crystalSymmetry. Notindexed pixels (CSList entry is +% the string 'notIndexed') are left black. +nPixels = numel(ebsd); +rgb = zeros(nPixels, 3); + +phaseIds = ebsd.phaseId; +rot = ebsd.rotations; % plain rotation array, no symmetry attached + +for pid = 1:length(ebsd.CSList) + cs = ebsd.CSList{pid}; + if ~isa(cs, 'crystalSymmetry') + continue; + end + mask = (phaseIds == pid); + if ~any(mask) + continue; + end + % Build single-phase orientations by attaching this phase's cs to the + % corresponding rotations. orientation2color requires single-phase input. + oriPhase = orientation(rot(mask), cs); + key = ipfTSLKey(cs); + key.inversePoleFigureDirection = refDir; + rgb(mask, :) = key.orientation2color(oriPhase); +end + +% Reshape to image. Gridded EBSD stores pixels in row-major scan order; the +% reshape with [nY, nX] mirrors how the .ang lines were ordered (row by row, +% column varying fastest within each row). +img = reshape(rgb, nY, nX, 3); + +% Convert to uint8 and write as TIFF. +imgU8 = uint8(round(img * 255)); +imwrite(imgU8, outPath); +fprintf('Wrote %s\n', outPath); +fprintf('\nFor side-by-side compare:\n'); +fprintf(' EDAX reference: /Users/Shared/Data/Edax_IPF_Test/crystallography_output/ipfs.tif\n'); +fprintf(' EbsdLib output: /tmp/AllLaueClasses_ebsdlib.png (run make_ipf first)\n'); +fprintf(' MTEX output: %s\n', outPath); diff --git a/Code_Review/run_compare_ipf_legends.sh b/Code_Review/run_compare_ipf_legends.sh new file mode 100755 index 00000000..a9e05943 --- /dev/null +++ b/Code_Review/run_compare_ipf_legends.sh @@ -0,0 +1,18 @@ +#!/usr/bin/env zsh +# Run compare_pole_figures_all_laue.m headlessly with MTEX initialized. + +set -euo pipefail + +MATLAB_BIN="/Applications/MATLAB_R2025b.app/bin/matlab" +MTEX_STARTUP="/Users/mjackson/Workspace7/mtex-6.1.0/startup_mtex.m" +SCRIPT_DIR="${0:A:h}" +PF_SCRIPT="${SCRIPT_DIR}/compare_ipf_legends_all_laue.m" + +for f in "$MATLAB_BIN" "$MTEX_STARTUP" "$PF_SCRIPT"; do + if [[ ! -e "$f" ]]; then + print -u2 "Error: required file not found: $f" + exit 1 + fi +done + +"$MATLAB_BIN" -batch "run('${MTEX_STARTUP}'); run('${PF_SCRIPT}');" diff --git a/Code_Review/run_compare_pole_figures.sh b/Code_Review/run_compare_pole_figures.sh new file mode 100755 index 00000000..0e5bef16 --- /dev/null +++ b/Code_Review/run_compare_pole_figures.sh @@ -0,0 +1,18 @@ +#!/usr/bin/env zsh +# Run compare_pole_figures_all_laue.m headlessly with MTEX initialized. + +set -euo pipefail + +MATLAB_BIN="/Applications/MATLAB_R2025b.app/bin/matlab" +MTEX_STARTUP="/Users/mjackson/Workspace7/mtex-6.1.0/startup_mtex.m" +SCRIPT_DIR="${0:A:h}" +PF_SCRIPT="${SCRIPT_DIR}/compare_pole_figures_all_laue.m" + +for f in "$MATLAB_BIN" "$MTEX_STARTUP" "$PF_SCRIPT"; do + if [[ ! -e "$f" ]]; then + print -u2 "Error: required file not found: $f" + exit 1 + fi +done + +"$MATLAB_BIN" -batch "run('${MTEX_STARTUP}'); run('${PF_SCRIPT}');" diff --git a/Code_Review/run_mtex_ang_to_ipf.sh b/Code_Review/run_mtex_ang_to_ipf.sh new file mode 100755 index 00000000..4c1d0935 --- /dev/null +++ b/Code_Review/run_mtex_ang_to_ipf.sh @@ -0,0 +1,18 @@ +#!/usr/bin/env zsh +# Run compare_pole_figures_all_laue.m headlessly with MTEX initialized. + +set -euo pipefail + +MATLAB_BIN="/Applications/MATLAB_R2025b.app/bin/matlab" +MTEX_STARTUP="/Users/mjackson/Workspace7/mtex-6.1.0/startup_mtex.m" +SCRIPT_DIR="${0:A:h}" +PF_SCRIPT="${SCRIPT_DIR}/mtex_ang_to_ipf.m" + +for f in "$MATLAB_BIN" "$MTEX_STARTUP" "$PF_SCRIPT"; do + if [[ ! -e "$f" ]]; then + print -u2 "Error: required file not found: $f" + exit 1 + fi +done + +"$MATLAB_BIN" -batch "run('${MTEX_STARTUP}'); run('${PF_SCRIPT}');" diff --git a/Code_Review/v3_phase0_design_notes.md b/Code_Review/v3_phase0_design_notes.md new file mode 100644 index 00000000..66bab357 --- /dev/null +++ b/Code_Review/v3_phase0_design_notes.md @@ -0,0 +1,924 @@ +# EbsdLib v3 — Phase 0 Design Notes + +Companion to `v3_stabilization_plan.md`. The main plan describes *what* +Phase 0 has to do at the milestone level. This doc captures the design +decisions that emerged through several rounds of discussion: API shape, +code layout, sequencing, and the empirical findings that informed each +choice. If you're picking up Phase 0 cold, read this first, then +consult the plan for the surrounding context. + +This document supersedes earlier exploratory drafts of the Phase 0 +design. The earlier ideas (a marker-based metadata scheme, a +constructor-bound `LaueOps::HexConvention` for the entire library, a +default of X‖a*) were considered and set aside; the rationale is in +§11. + +--- + +## 1. The problem in one paragraph + +EbsdLib's hex/trig direction tables describe crystal-frame plane +normals and Laue symmetry rotations in *some* Cartesian basis. Two +conventions exist in the field: **X‖a** (real-lattice a along +Cartesian X — used by EDAX/TSL/OIM Analysis and every released +DREAM.3D / DREAM3DNX / SIMPL / SIMPLNX file) and **X‖a\*** (reciprocal- +lattice a* along Cartesian X — used by Oxford/HKL acquisition systems +and MTEX). The two are related by a 30° rotation about c. For a +hex/trig pole figure, the choice of convention rotates the visible +{10-10} and {2-1-10} clusters by 30° on the disk. + +There is no "correct" convention; both are crystallographically valid. +The decision is which one EbsdLib renders by default and how it lets +callers opt into the other. + +--- + +## 2. Design decisions + +### 2.1 — Convention is a rendering choice, not a default-correctness choice + +Bunge angles, quaternions, and Rodrigues vectors describe rotations. +A rotation R is the same physical thing regardless of which Cartesian +basis we attach to the crystal frame. Misorientation angles are +invariant. FZ-reduced orientations are invariant. The Laue group +itself is invariant. Most of EbsdLib's outputs (computed average +orientations, misorientation magnitudes, KAM, ODFs) don't care about +the convention. + +The convention only matters when we *project* a rotation into a +specific crystal direction (e.g. "where does the [10-10] pole sit in +the sample frame?"). That projection happens inside EbsdLib's +**rendering paths**: pole figures, IPF colors, IPF legends, +Patala-style misorientation colors. Those are the only places that +need to be convention-aware. + +Putting a convention parameter on the LaueOps constructor (the +earlier proposal) was overkill — it made every method +convention-aware, which in turn forced every caller to think about +the convention even for operations where it doesn't matter. Putting +the parameter only on the rendering paths localizes the choice to +where it has visible meaning. + +### 2.2 — Default = X‖a (legacy DREAM3D convention) + +Existing DREAM3DNX users have: +- TSL `.ang` and Oxford `.ctf` data flowing through saved pipelines +- Published figures, archived datasets, training material with PFs + rendered in X‖a / OIM-Analysis form +- An expectation that "running my pipeline produces what it always did" + +A default convention change to X‖a* would silently rotate every +hex/trig PF in every saved pipeline by 30°. The conservative choice +— and the right one for the production user base — is to default +to X‖a and make X‖a* an explicit opt-in. + +This is a reversal of the original v3 framing ("now matches MTEX +out of the box"). The MTEX-compatibility work isn't wasted; it +becomes a feature available *on demand* rather than the default +behavior. + +### 2.3 — Convention exposed via config-struct extension and per-method parameter, not the constructor + +The `PoleFigureConfiguration_t` and `CompositePoleFigureConfiguration_t` +structs already carry rendering settings (`imageDim`, `numColors`, +`labels`, etc.). Adding `HexConvention` to them is the natural place: + +```cpp +struct PoleFigureConfiguration_t +{ + // ... existing fields ... + ebsdlib::HexConvention hexConvention = ebsdlib::HexConvention::XParallelA; +}; +``` + +For methods that don't take a config struct (`generateIPFColor`, +`generateIPFTriangleLegend`, `generateRodriguesColor`), add a default +argument directly: + +```cpp +virtual Rgb generateIPFColor(double* eulers, + double* refDir, + bool convertDegrees, + ebsdlib::HexConvention conv = ebsdlib::HexConvention::XParallelA) const = 0; +``` + +The default at the API level preserves current behavior. simplnx +filters that want to expose the choice to the user pass it explicitly +based on a UI parameter; filters that don't care just use the default. + +### 2.4 — A separate "Convert Hex/Trig Euler Angles Between Cartesian Conventions" filter handles MTEX export + +Users who want to *export* their data in X‖a* form (for MTEX import +or archival) run this dedicated filter. It produces a new EulerAngles +array with `phi2 ± 30°` applied to hex/trig phases (cubic / tet / +ortho / mono / tri pass through unchanged). This is a one-shot data +transformation, not a per-render option. + +See §6 for the filter spec. + +--- + +## 3. The `HexConvention` enum + +```cpp +namespace ebsdlib +{ +enum class HexConvention : uint8_t +{ + XParallelA, // Real-lattice a along Cartesian X. + // EDAX/TSL/OIM Analysis. Every released DREAM.3D / + // DREAM3DNX / SIMPL / SIMPLNX file is in this form + // by codebase guarantee. Default for all rendering + // paths to preserve backward compatibility. + XParallelAStar // Reciprocal-lattice a* along Cartesian X. + // Oxford / HKL (Channel 5, AZtec) / MTEX. Opt-in + // for users wanting MTEX-comparable visual output. +}; +} +``` + +Header location: `Source/EbsdLib/Core/EbsdLibConstants.h` (or a new +small dedicated header `Source/EbsdLib/Core/HexConvention.h` if we +don't want to bloat the constants file). + +--- + +## 4. API shape — what changes, what doesn't + +### Methods that gain the parameter (rendering paths) + +| Method | How | +|---|---| +| `LaueOps::generatePoleFigure(PoleFigureConfiguration_t&)` | New `hexConvention` field on the config struct, default `XParallelA` | +| `PoleFigureCompositor::generateCompositeImage(CompositePoleFigureConfiguration_t&)` | New `hexConvention` field on the config struct, default `XParallelA` | +| `LaueOps::generateIPFColor(...)` (all overloads) | New trailing `HexConvention conv = XParallelA` parameter | +| `LaueOps::generateIPFTriangleLegend(int, bool)` | New trailing `HexConvention conv = XParallelA` parameter | +| `LaueOps::generateRodriguesColor(...)` | New trailing `HexConvention conv = XParallelA` parameter | + +For non-hex/trig Laue classes (cubic, tet, ortho, mono, tri), the +parameter is accepted but ignored — no basal-plane convention exists. +Uniform API is worth more than micro-optimizing away an unused argument. + +### Methods that don't change + +Everything else. Specifically, the following stay convention-agnostic: + +| Method | Why | +|---|---| +| `getODFFZRod`, `getMDFFZRod` | FZ reduction is sym-group invariant; same physical rotation regardless of basis | +| `getNearestQuat`, `getMisoQuat` | Misorientation rotation is the same physical thing under any convention; the angle is invariant | +| `calculateMisorientation` | Same | +| `getSchmidFactorAndSS`, `getmPrime`, `getF1`, `getF1spt`, `getF7` | Scalar outputs; LaueOps' internal convention (X‖a) is self-consistent for these | +| `getNumSymOps`, `getQuatSymOp(i)`, `getMatSymOp(i)` | These return convention-bound data, but they're returning EbsdLib's *internal* form (X‖a). Callers who consume these directly are operating in X‖a. | +| All non-hex/trig Laue class methods | No basal-plane convention exists | + +### Rationale for not putting the parameter on `LaueOps` constructor + +The constructor-bound design (earlier proposal) made convention a +property of the `LaueOps` *instance* — every method consulted the +instance's convention. That has the consistency-by-construction +property, which is appealing, but it forces every caller to make +the convention choice even for operations where it has no effect. +For a typical filter that does FZ reduction or misorientation work, +the convention parameter would just be noise. + +The rendering-only design accepts that misorientation axes computed +in X‖a need a small bridge if a downstream filter wants to render +them in X‖a* form (see §9.2), in exchange for a much smaller API +surface change. + +--- + +## 5. Internal architecture for sym op constants + +EbsdLib's hex/trig classes carry compile-time arrays of sym ops: + +```cpp +namespace HexagonalHigh { + static const std::array k_QuatSym = { ... }; + static const std::array k_MatSym = { ... }; + static const std::array k_RodSym = { ... }; +} +``` + +These describe symmetry rotations in the crystal frame, and the +basal-plane axes are convention-dependent — so the numerical values +differ between X‖a and X‖a*. + +### 5.1 — Approach: canonical + derived via templated factory + +> **Note:** This section captures the design *pattern* (single +> canonical hand-maintained set + derived alternate via templated +> factory + two static instances + pointer-flip dispatch). The +> *direction* of canonical-to-derived was revised during PR 2e — +> see §16 for the implemented choice (canonical = X‖a*, derived = +> X‖a) and the reasoning behind it. The pseudocode below uses the +> originally-planned direction (canonical = X‖a, derived = X‖a*) +> for narrative continuity with the rest of this document; the real +> code in `Source/EbsdLib/LaueOps/HexagonalOps.cpp` and the three +> peer files is in the §16 direction. + +Hand-maintain *one* set of constants in the canonical form. Derive +the alternate-convention version algorithmically at TU static-init +via a `SymOps` helper struct with an `if constexpr` factory. Both +static instances exist in the binary; the rendering methods pick +one based on the `HexConvention` parameter. + +```cpp +namespace HexagonalHigh +{ +// One canonical set, hand-maintained, in X||a form. +static const std::array k_CanonicalQuatSym = { /* X||a values */ }; +static const std::array k_CanonicalMatSym = { /* X||a values */ }; +static const std::array k_CanonicalRodSym = { /* X||a values */ }; + +struct SymOps +{ + std::array quat; + std::array mat; + std::array rod; + + template + static SymOps build() + { + SymOps out; + if constexpr (Conv == ebsdlib::HexConvention::XParallelA) + { + // Trivial copy of the canonical set. + out.quat = k_CanonicalQuatSym; + out.mat = k_CanonicalMatSym; + out.rod = k_CanonicalRodSym; + } + else // XParallelAStar — derive by 30°-about-c similarity transform + { + const QuatD q30 = QuatD::FromAxisAngle(0.0, 0.0, 1.0, 30.0 * ebsdlib::constants::k_PiOver180D); + const QuatD q30Inv = q30.conjugate(); + for (size_t i = 0; i < 12; ++i) + { + out.quat[i] = q30 * k_CanonicalQuatSym[i] * q30Inv; + out.mat[i] = /* matrix similarity: R(30) · M · R(-30) */; + out.rod[i] = /* rod conjugation */; + } + } + return out; + } +}; + +// Two static instances. Built once at TU static-init. +// Order is well-defined because they sit BELOW k_CanonicalQuatSym. +static const SymOps k_SymOps_XParallelA = SymOps::build(); +static const SymOps k_SymOps_XParallelAStar = SymOps::build(); +} // namespace HexagonalHigh +``` + +The rendering methods select the right table based on the incoming +`HexConvention` argument: + +```cpp +std::vector +HexagonalOps::generatePoleFigure(PoleFigureConfiguration_t& config) const +{ + const HexagonalHigh::SymOps* sym + = (config.hexConvention == ebsdlib::HexConvention::XParallelAStar) + ? &HexagonalHigh::k_SymOps_XParallelAStar + : &HexagonalHigh::k_SymOps_XParallelA; + + // Use sym->quat[i], sym->mat[i], sym->rod[i] in the rendering loop. + // Apply the transient phi2 shift to the local Euler copy when + // config.hexConvention == XParallelAStar (see §7). + // Use the convention-appropriate direction tables for the plane families. +} +``` + +### 5.2 — Why this shape + +- **One canonical hand-maintained set** per Laue class — no risk of + drift between two parallel hand-typed tables. +- **Compile-time elimination** of the unused branch in each + template instantiation. `SymOps::build()` has no + conjugation code in its emitted form; `build()` + has no copy-from-canonical code. +- **Zero per-instance memory cost.** Both static instances exist + once in the binary regardless of how many `HexagonalOps` + instances are constructed. +- **Convention dispatch localized** to `SymOps::build<>` and the + pointer-pick at the top of each rendering method — not smeared + through method bodies. +- **Same architecture pattern across all four hex/trig classes** + (`HexagonalOps`, `HexagonalLowOps`, `TrigonalOps`, + `TrigonalLowOps`), each with its own `SymOps` namespace block. + +### 5.3 — Plane-family direction tables + +The same idea applies to the per-Laue plane-family direction lists +used inside `generateSphereCoordsFromEulers` (the hardcoded +`direction[0] = 1.0; direction[1] = 0.0; ...` blocks for {10-10}, +{2-1-10}, etc.). Add convention-aware pairs of these tables — X‖a +canonical, X‖a* derived — and pick the right one based on the +incoming `HexConvention`. Same `SymOps`-style helper applies. + +### 5.4 — `getDefaultPoleFigureNames()` + +Returns string labels for the three default plane families. The slot +*order* (c-axis / prism / a-family) is the same under both conventions +— the rendering pipeline always emits family-0 / family-1 / family-2 +in that fixed order. What changes between conventions is only the +*string* the third slot prints, because OIM and MTEX pick different +orbit-member representatives for the `{2-1-10}` a-family: + +| Slot | X‖a (OIM-style) | X‖a* (MTEX-style) | +|------|-----------------|--------------------| +| 0 | `<0001>` | `<0001>` | +| 1 | `<10-10>` | `<10-10>` | +| 2 | `<2-1-10>` | `<11-20>` | + +`<2-1-10>` and `<11-20>` are sym-equivalent under the 6-fold about c +— they describe the same physical family, just with different +"first orbit member" choices that match each tribe's tooling. + +```cpp +virtual std::array +getDefaultPoleFigureNames(ebsdlib::HexConvention conv = HexConvention::XParallelAStar) const = 0; +``` + +> **PR 2i implementation note:** Earlier drafts of this section +> proposed swapping slot order between conventions (e.g. X‖a returns +> `{<0001>, <2-1-10>, <10-10>}`). That was wrong — the renderer +> doesn't reorder families, so swapping the labels in the array would +> have misaligned labels with rendered content. The implementation +> only swaps the string in slot 2; slot order is fixed. + +> **Trigonal classes (-3m, -3):** TrigonalHigh has two distinct prism +> families; the OIM/MTEX label-tradition split that hex 6/mmm has +> doesn't apply cleanly. Both `TrigonalOps` and `TrigonalLowOps` +> accept the `conv` parameter for API uniformity but currently return +> the same strings under both conventions. Revisit if a user reports +> a specific OIM/MTEX label divergence for trigonal phases. + +### 5.5 — Caveats to verify before committing + +1. `QuatD` and `Matrix3X3D` need to be usable in static-init context. + Almost certainly fine (POD-ish types with simple math), but worth + a smoke test. +2. Static-init order within the TU: keep `k_Canonical*` declarations + ABOVE `k_SymOps_*` declarations in the same `.cpp` file. Within + a single TU, top-to-bottom order is guaranteed. +3. If `QuatD` has `constexpr` constructors and operators, the whole + thing can become `constexpr` and the derivation moves to compile + time. Worth a follow-up; not required for correctness. + +--- + +## 6. The "Convert Hex/Trig Euler Angles Between Cartesian Conventions" filter + +This is a separate simplnx filter, not part of LaueOps proper. It +handles the case where the user wants to *export* orientation data +in X‖a* form (e.g. for MTEX import) or *import* X‖a* data into a +DREAM3DNX pipeline that's otherwise running in X‖a. + +### 6.1 — Filter spec + +| Parameter | Type | Default | Notes | +|---|---|---|---| +| `InputEulerAngles` | DataPath (Float32, 3-component) | — | Source data | +| `InputCrystalStructures` | DataPath (UInt32) | — | Per-phase Laue class indices | +| `InputPhases` | DataPath (Int32) | — | Per-tuple phase index | +| `InputConvention` | dropdown | `XParallelA` | What convention the input data is in | +| `OutputConvention` | dropdown | `XParallelAStar` | What convention to write | +| `OutputEulerAngles` | DataPath (output array name) | `EulerAngles_X||a*` | Default name encodes the convention | + +### 6.2 — Algorithm + +``` +For each tuple i: + phase = InputPhases[i] + cs = InputCrystalStructures[phase] + if cs is one of {Hexagonal_High, Hexagonal_Low, Trigonal_High, Trigonal_Low}: + if InputConvention == XParallelA and OutputConvention == XParallelAStar: + OutputEulerAngles[i] = (phi1, Phi, phi2 - 30°) // sign TBD per §7 + else if InputConvention == XParallelAStar and OutputConvention == XParallelA: + OutputEulerAngles[i] = (phi1, Phi, phi2 + 30°) + else if InputConvention == OutputConvention: + OutputEulerAngles[i] = InputEulerAngles[i] // no-op + else: + OutputEulerAngles[i] = InputEulerAngles[i] // non-hex/trig pass through +``` + +### 6.3 — Properties to verify in tests + +- **Round-trip lossless.** `Convert(A→A*)` then `Convert(A*→A)` returns the original Bunge angles within FP precision. +- **Cubic invariance.** Cubic data passes through unchanged (no shift applied). +- **Phase-wise gating.** Multi-phase scans with mixed cubic + hex/trig only shift the hex/trig points. + +### 6.4 — Documentation requirements + +The filter doc should: +- Reference the convention infographic at `Docs/x_parallel_a_star_convention.svg`. +- Reference the methodology in `Data/Pole_Figure_Validation/ReadMe.md`. +- State explicitly that this filter operates on Bunge Euler angles only — converting derived parameterizations (Quaternions, Rodrigues, etc.) requires running this filter on the source Bunge first, *then* re-running Convert Orientations. +- Note that the round-trip is lossless, so the user can convert back without losing precision. + +--- + +## 7. The phi2 sign — empirically TBD + +The closed-form derivation says `X||a → X||a*` is `phi2 -= 30°`. +Empirical testing during the conversation showed that the +`make_pole_figure.cpp` matrix-path transformation produces output +consistent with `phi2 += 30°` instead. The likely cause is in +EbsdLib's `AxisAngle::toOrientationMatrix()` returning a passive form +for `(z, +90°)` that equals `R_z(-90°)` in active terms, which +inverts the closed-form derivation. The conjugation direction in +the sym op similarity transform may flip correspondingly. + +**Action during PR 2**: implement the bridge with `phi2 -= 30°` per +the closed-form derivation, validate against `make_pole_figure`'s +output on a real `.ang` file. If it doesn't match, flip the sign and +the `SymOps::build()` similarity-transform direction +together. This is a 5-line edit; the full architecture is unchanged. + +The conversion filter (§6) needs the same empirical confirmation +before being published — just spot-check round-trip and cross-check +against MTEX output once. + +--- + +## 8. Affected simplnx filters + +Three categories. + +### 8.1 — Filters that gain a `HexConvention` UI parameter + +| Filter | Parameter | Default | +|---|---|---| +| `Generate IPF Colors` | `Hex/Trig Convention` | X‖a | +| `Generate IPF Legend` | `Hex/Trig Convention` | X‖a | +| `Write Pole Figure` | `Hex/Trig Convention` | X‖a | +| `Generate Misorientation Colors` (Patala) | `Hex/Trig Convention` | X‖a | + +Each filter passes the user's choice into the corresponding LaueOps +method or config struct. + +### 8.2 — A new filter + +| Filter | Purpose | +|---|---| +| `Convert Hex/Trig Euler Angles Between Cartesian Conventions` | One-shot Bunge-angle conversion for MTEX export / import (§6) | + +### 8.3 — Filters that need no change + +Everything else. Specifically: + +- `Convert Orientations` +- `Find Misorientations` (and Avg / FRM / Boundary variants) +- `Find Average Orientations` +- `Find KAM` +- `Find Schmid Factors` +- `Find Average C-Axis` +- `Find ODF / Texture Components / MDF` + +These run convention-agnostic. The numerical outputs are the same as +they always were under v2. + +--- + +## 9. Subtleties to be aware of + +### 9.1 — "Compute under X‖a, render under X‖a*" works for direct rendering + +A workflow like `ReadAngData → FindAverageOrientation → WritePoleFigure (X‖a* render)`: + +- `FindAverageOrientation` produces an orientation that is the same + *physical* rotation regardless of convention. Its Bunge representation + in the output array is in X‖a form (since LaueOps internal is X‖a). +- `WritePoleFigure` with X‖a* render configuration takes that + orientation, applies the convention bridge inside its rendering + method (transient phi2 shift + X‖a* sym ops + X‖a* direction tables), + produces the picture. +- Result: the same picture you'd get if every step had been in X‖a* + — because the rotation is the same physical rotation; only the + cartesian labeling changes. + +### 9.2 — Misorientation axis rendering needs a small bridge + +`FindMisorientations` outputs an axis-angle pair. The axis is in +*crystal frame* — and that's the X‖a crystal frame, since that's +EbsdLib's internal default. If a downstream filter wants to render +that axis on an X‖a* IPF/Patala-color map, the rendering filter has +to apply a basal-plane bridge to the axis component before plotting. + +Practically: `Generate Misorientation Colors` with `XParallelAStar` +configured needs to apply the convention shift to its input axis +array before invoking the color generation. Worth flagging in the +filter implementation so we don't end up with a 30°-off Patala color +map and assume EbsdLib is broken. + +### 9.3 — Cubic / tet / ortho / mono / triclinic ignore the parameter + +These have no basal-plane convention. The parameter is accepted on +the API for uniformity but is ignored internally. Filter UIs can +either suppress the parameter widget when the active phase is not +hex/trig, or always show it with a note that it has no effect for +non-hex/trig phases. Probably the latter — easier to implement and +makes the convention story consistent across the UI. + +--- + +## 10. UI labeling guidance + +Three signals to help users get this right at a glance: + +1. **Default IS what they used to see.** Dropdowns default to + `X||a (TSL/EDAX, OIM Analysis-compatible)`. Existing pipelines + reproduce existing output unless the user explicitly changes the + dropdown. + +2. **Opt-in is honestly labeled, not editorialized.** The other + choice reads `X||a* (Oxford / HKL / MTEX-compatible)`. Not + "modern" or "correct" — just naming the camps and what they're + compatible with. + +3. **Output PNG embeds the convention.** Same as the new MTEX + script in `Data/Pole_Figure_Validation/`: stamp the convention + into the title or filename of the rendered output so the user + looking at the picture later knows which form they're seeing + without needing to consult the pipeline JSON. + +For the conversion filter, expose two dropdowns (`InputConvention` +and `OutputConvention`) so the direction is explicit and the filter +is reusable both ways. + +--- + +## 11. Why earlier ideas were set aside + +Captured here so future-you doesn't re-walk the same paths. + +### 11.1 — Marker-based metadata stamping on EulerAngles arrays (rejected) + +The idea: stamp an `HexConvention` HDF5 attribute on each EulerAngles +array; readers stamp on import; downstream filters consult the marker; +absence of marker → assume X‖a (legacy guarantee). + +Why rejected: simplnx metadata feature is untested; would require +propagation through every orientation-derived filter (Convert +Orientations etc.); user-perceptible value is small given that the +codebase guarantee already tells us legacy data is X‖a. + +### 11.2 — Constructor-bound convention on `LaueOps` (rejected) + +The idea: every `LaueOps` instance carries the convention; every +method consults `m_InputDataConvention`; compile fails everywhere if +the default is removed. + +Why rejected: convention is only relevant for rendering paths; making +every method convention-aware was overkill and forced every caller +to think about the convention even where it has no effect. The +config-struct + per-method-default approach gives a smaller +API-surface change. + +### 11.3 — Default = X‖a* (matches MTEX out of the box) (rejected) + +The idea: v3 rebranded as "now matches MTEX"; existing users who +want OIM-form output set an explicit override. + +Why rejected: would silently rotate every hex/trig PF in every +saved DREAM3DNX pipeline by 30° on upgrade. The production user base +doesn't compare to MTEX; they want PFs that look like what OIM +Analysis produced. Behavior preservation is more valuable than the +"matches MTEX out of the box" headline. + +### 11.4 — Per-pipeline-level "convention mode" parameter (rejected) + +The idea: a single global pipeline-scoped switch; all filters honor it. + +Why rejected: simplnx has no clean place for pipeline-level state; +introducing one for this single concern would set a bad precedent. +Per-filter parameters are more honest — they make the choice visible +at the point where it has effect. + +--- + +## 12. PR sequencing + +### PR 1 — Plumbing only + +- Add `HexConvention` enum to a shared header. +- Add `hexConvention` field to `PoleFigureConfiguration_t` and + `CompositePoleFigureConfiguration_t` with default `XParallelA`. +- Add `HexConvention conv = XParallelA` parameter to + `LaueOps::generateIPFColor` (all overloads), + `generateIPFTriangleLegend`, `generateRodriguesColor`, + `getDefaultPoleFigureNames`. +- Inside method bodies: parameter unused for now. No internal + refactoring of sym op tables. Output stays bit-identical because + the existing internal X‖a* tables work for the X‖a default the + same way they did before — wait, they don't. (See note below.) + +**Note**: PR 1 has a wrinkle that doesn't exist if we keep v3's X‖a* +internal tables. Currently, EbsdLib renders hex/trig under X‖a*. If +we want PR 1 to be truly bit-identical to current v3 output, the +default needs to be `XParallelAStar` even though the long-term +default is `XParallelA`. Then PR 2 flips the canonical tables to +X‖a, the default to X‖a, and that's where output for legacy data +*starts matching what they had pre-v3*. + +So a more accurate sequencing: + +### PR 1 (revised) — Plumbing with current-behavior default + +- Add `HexConvention` enum. +- Add the parameter to all rendering APIs (config-struct fields and + method args) with default `XParallelAStar` (matches current v3 + internal behavior). +- No internal change. Output bit-identical to current v3. + +### PR 2 — Internal architecture: SymOps struct + per-class dispatch + +> **Revised during execution.** The original sketch below assumed +> the canonical hand-maintained tables would be hand-flipped back +> to X‖a (v2-style) values. PR 2e revealed that v2 → v3 was not a +> uniform basis rotation — see §16. The implemented sequencing +> kept canonical = X‖a* (current v3 hand-typed, MTEX-validated) and +> derived X‖a via the conjugation transform. + +- For the four hex/trig Ops files: introduce the `SymOps` struct, + the templated `build<>` factory, the two static instances. +- Replace internal `HexagonalHigh::k_QuatSym[i]` references with + `sym->quat[i]` where `sym` is picked at the top of each rendering + method from `config.hexConvention` / the per-method `conv` arg. +- *(Originally planned, dropped per §16:)* Hand-flip the canonical + tables to X‖a using git-history-recovered v2 values. +- *(Originally planned, dropped per §16:)* Flip + `getDefaultPoleFigureNames` to return X‖a strings by default. +- Validate: with `XParallelAStar` (current default), output is + bit-identical to current v3 / matches MTEX. With `XParallelA`, + the conjugation-derived path produces a self-consistent X‖a + rendering (basal-plane content rotated 30° about c on the disk). + +### PR 3 — Remove default values; force simplnx audit + +- Remove the `= XParallelAStar` default from every rendering API + (config-struct fields and per-method args). +- Every `LaueOps` construction site and every rendering call site + in simplnx (and any other consumer) becomes a compile error + until the caller explicitly supplies a `HexConvention`. +- This forces a deliberate, audited choice at every call site + rather than letting filters quietly inherit a default. +- The eventual long-term default (X‖a, per §2.2) is then enforced + at the *filter UI* level (PR 4), not at the LaueOps API. The + LaueOps API itself stays default-free. + +### PR 4 — simplnx UI: per-filter dropdowns + +- Add `Hex/Trig Convention` dropdown to `Generate IPF Colors`, + `Generate IPF Legend`, `Write Pole Figure`, `Generate Misorientation Colors`. +- Default = `X‖a (TSL/EDAX)`. +- Plumb the user's choice into the LaueOps call. + +### PR 5 — `Convert Hex/Trig Euler Angles Between Cartesian Conventions` filter + +- New simplnx filter per §6 spec. +- Tests: round-trip lossless, cubic pass-through, phase-wise gating. + +### PR 6 — Documentation + +- Update `Data/Pole_Figure_Validation/ReadMe.md` to explain dual + convention support. +- Update `Docs/x_parallel_a_star_convention.svg` footer to reflect + default = X‖a, opt-in = X‖a*. +- Filter docs for the four UI-changed filters and the new conversion filter. +- Release notes: "v3 now supports both X‖a (default, OIM-compatible) + and X‖a* (opt-in, MTEX-compatible) for hex/trig rendering. No + default behavior change for existing pipelines." + +--- + +## 13. Validation evidence + +### 13.1 — `12.ang` test (Titanium Alpha, Hex 6/mmm) + +Three rendering paths compared on the same TSL `.ang` input: + +| Path | Treats Bunge as | Renders in | +|---|---|---| +| `make_pole_figure` (with in-app `phi2 ± 30°` + matrix path) | X‖a (after the shift) | X‖a / OIM-form | +| DREAM3DNX (current v3, no shift) | X‖a* (misinterpretation of X‖a-stored data) | X‖a* / MTEX-form | +| MTEX (with `phi2 += 30°` in MATLAB after CI filter) | X‖a (via the script's add) | X‖a / OIM-form | + +Under the new design (PR 2 onward, default X‖a): + +- DREAM3DNX (no special config) → X‖a render → matches `make_pole_figure` → matches OIM Analysis → matches MTEX-with-shift. +- DREAM3DNX with explicit X‖a* config → X‖a* render → matches MTEX-without-shift. + +The `12.ang` test set lives at `/Users/Shared/Data/MTR_Data/RR_MTR_Examples/`. +The MTEX-side processing for the comparison is in +`Data/Pole_Figure_Validation/mtex_ang_to_pole_figures.m`. + +### 13.2 — Cubic textbook orientations + +The position-space validation (1752 buckets, 12 canonical orientations +× 11 Laue classes × 3 plane families, max distance 6×10⁻⁸ vs MTEX) at +`Data/Pole_Figure_Validation/` is the regression guard. It runs under +v3's X‖a* internal default and continues to pass after PR 2 because: + +1. The current default convention is still `XParallelAStar`, so the + regression test is unchanged in its calling convention. +2. The canonical sym op + direction tables are unchanged — they're + still the v3 hand-typed values. (The implementation chose + canonical = X‖a*, see §16.) The MTEX-side numbers therefore + match bit-for-bit what they did before PR 2 landed. + +When PR 3 removes the default values, the 1752-bucket harness will +be updated to pass `XParallelAStar` explicitly so the regression +remains apples-to-apples against MTEX. + +The X‖a (derived) path is exercised by `LaueOpsTest`'s convention +regression suite (see PR 2b/2d): for each of the four hex/trig Ops +classes, `generateSphereCoordsFromEulers` is invoked under both +conventions with a zero-Euler input, and the X‖a output is asserted +to be `R_z(+30°)` applied to the X‖a* canonical first-family entry. +That gives a self-consistency guard on the conjugation transform +without requiring a second MTEX validation pass. + +--- + +## 14. Related: simplnx `WritePoleFigure` stale-label issue + +Independent of the LaueOps work but lives in the same area: the +simplnx `WritePoleFigure` filter takes three user-supplied label +strings (`IntensityPlot1Name` etc.) that are stamped onto the output +PNG but do *not* drive what gets plotted. Pipelines built against +pre-v3 hex/trig defaults have stale strings — the plotted content +matches v3's `getDefaultPoleFigureNames` output but the labels say +something else. Visible to the user as "the {10-10} and {2-1-10} +images appear swapped vs `make_pole_figure`". + +After PR 2 lands and the canonical tables are X‖a, the *content* +under `<10-10>` and `<2-1-10>` labels reverts to the legacy v2 +positions, so old saved pipelines automatically display correctly +labeled images. Nothing more to do for this case. + +For users wanting the X‖a* render, the new `Hex/Trig Convention` +dropdown drives both the rendering and (ideally) the auto-default +labels. Filter UI should auto-populate the three label fields from +`op->getDefaultPoleFigureNames(conv)` when the user changes the +convention dropdown — overrideable, but defaulting to the right +strings. + +--- + +## 15. Open questions + +- Confirm `QuatD` and `Matrix3X3D` work in static-init context + (smoke test during PR 2). **Resolved during PR 2a:** they do — + the two static `SymOps` instances build cleanly at TU init. +- Confirm `phi2` sign empirically during PR 2 (closed form vs + empirical-from-`make_pole_figure` discrepancy described in §7). +- Confirm sym op conjugation direction during PR 2 (couples with + the phi2 sign). **Resolved during PR 2b:** `q_30 * S * q_30Inv` + (with `q_30 = R_z(+30°)`) maps canonical X‖a* → X‖a; verified + by the `LaueOpsTest` convention regression suite which checks + that the derived first-family entry is `R_z(+30°)` applied to + the canonical first-family entry. +- Decide whether `SymOps` derivation can move to `constexpr` + (depends on `QuatD`'s API). Optional, follow-up work. +- Decide whether `WritePoleFigure` filter UI auto-defaults the + three plot labels from `getDefaultPoleFigureNames(conv)` when + the user changes the convention dropdown. Strong recommendation + yes. + +--- + +## 16. PR 2e finding: canonical-source-of-truth direction + +§5.1 originally proposed making X‖a the canonical hand-maintained +set and deriving X‖a* via the templated `SymOps::build<>` factory. +The reasoning was: X‖a is the legacy v2 form, the v2 hand-typed +sym op tables are recoverable from git history, and the templated +factory then generates the X‖a* tables algorithmically by +`q_30 * S * q_30Inv` with matching `R_z(+30°)` rotation of the +direction-family lists. + +**PR 2e investigated this hand-flip and chose the opposite +direction.** Canonical = X‖a* (current v3 hand-typed values), +derived = X‖a (via the conjugation transform). This subsection +captures why. + +### 16.1 — What was discovered + +Before hand-flipping, the natural sanity check is: does +`R_z(-30°)` applied member-by-member to the v3 X‖a* sym op / +direction tables actually reproduce the v2 X‖a values pulled +from git history? + +It does not. F1 (the {10-10}-style family) and F2 (the +{2-1-10}-style family) shift by *different* signs of 30° between +v2 and v3 in the hand-typed tables — i.e. the v2 → v3 transition +was not a uniform 30°-about-c rotation of the entire table. The +v3 author chose different orbit members as the "first" entry per +family than the v2 author did. The sym op table itself (the +twelve quaternions describing the rotation group) shows similar +per-entry mismatch when compared by index. + +### 16.2 — Why this isn't a bug, and why hand-flipping doesn't help + +The user supplied the missing context: the sym op ordering used +across the EbsdLib hex/trig classes originates from the +**EMsoftOO** project. The order was hand-derived for +**loop-efficiency** in EMsoftOO's inner loops, not to encode any +mathematical relationship between consecutive entries. Two +authors writing the "same" sym op table can legitimately ship +different orderings, and they will disagree by index even when +the orbits they describe are physically identical. + +The same is true of the per-family direction lists: a hex 6/mmm +{10-10} family has six members (three unique up to the inversion +center). Picking which one to call "first" is a stylistic choice; +the orbit is complete and physically correct either way. + +So the v3 hand-typed tables do not encode a different physical +group from the v2 tables — they encode the *same* rotation group +and the *same* plane-normal orbits, just enumerated in a different +order. Hand-flipping v3 X‖a* to v2 X‖a values would not produce a +"more correct" library; it would produce a stylistically v2-looking +library at the cost of: + +- breaking the existing `LaueOpsTest::*Test` regression baselines + that have been validated against MTEX bucket-position output + (see §13.2 — the 1752-bucket cross-check at + `Data/Pole_Figure_Validation/`), +- forcing every internal use of `k_QuatSym[i]` to be re-blessed + against the new ordering, and +- introducing a numerical-output diff in the X‖a* derived path + that's purely an enumeration artifact, not a physics change. + +### 16.3 — Decision: keep canonical = X‖a* + +PR 2a–2d landed with canonical = X‖a* and derived = X‖a, on the +reasoning that: + +1. The X‖a* canonical tables are the ones validated by the + 1752-bucket MTEX regression. They are known-good. +2. The conjugation transform `q_30 * S * q_30Inv` plus + `R_z(+30°) · d` for direction tables is a closed-form, easily + audited derivation. The X‖a side is correct *by construction* + from the validated X‖a* side. +3. The eventual X‖a output (via the derived path) lands on the + same physical orbits as v2/OIM-Analysis, just not necessarily + the same per-index numerical values. Because all rendering + methods iterate the full orbit, the visible PF / IPF output is + indistinguishable from v2 output. The only difference is which + orbit member happens to be `sym->dirsFamily1[0]` internally, + and that's not user-visible. + +PR 2e is therefore a **documentation-only commit**: this +subsection plus §5.1 / §12 cross-references, plus comment +tightening in `HexagonalOps.cpp` / `HexagonalLowOps.cpp` / +`TrigonalOps.cpp` / `TrigonalLowOps.cpp` to reflect the chosen +direction. + +### 16.4 — What this means for downstream work + +- **PR 3 (default removal):** unchanged. Strip the + `= XParallelAStar` defaults from every rendering API; force + every caller to make the choice explicitly. +- **simplnx UI default (PR 4):** still X‖a, per §2.2. The fact + that EbsdLib's *internal* canonical happens to be X‖a* doesn't + change the user-facing default. simplnx filters pass + `XParallelA` explicitly to LaueOps, which then does its + conjugation-derive-on-the-fly via the X‖a static instance, and + produces the legacy-OIM-style PF. +- **MTEX validation harness:** continues to use `XParallelAStar` + explicitly, comparing against the canonical (not derived) path. + No regression update needed. +- **v2-style auditing:** if a future user reports "the X‖a output + doesn't match what I had in v2 at index N of the sym op table", + the answer is "the orbit is the same, the indexing differs by + EMsoftOO loop ordering — compare by orbit membership, not by + index". Document this in the filter help text alongside the + PF-rendering workflow. + +### 16.5 — Lesson for future Phase-N convention work + +When introducing a second convention to a Laue-class library, +**don't assume** that two existing hand-typed tables related by +"the same" basis rotation will agree member-by-member after +applying that rotation. Per-entry hand-typing inherits the +author's enumeration choice. The right validation is *orbit +equality*, not *table equality*. + +--- + +## Cross-references + +- `v3_stabilization_plan.md` — Phase 0 milestones, risk register, release notes. +- `Data/Pole_Figure_Validation/ReadMe.md` — convention background, validation methodology. +- `Docs/x_parallel_a_star_convention.svg` — geometric picture of X‖a vs X‖a*. +- `Source/Apps/make_pole_figure.cpp` — current reference for the + in-app convention shift; PR 2 moves this logic into LaueOps. +- `Source/EbsdLib/Utilities/PoleFigureUtilities.h` — location of + `PoleFigureConfiguration_t` to extend. +- `Source/EbsdLib/Utilities/PoleFigureCompositor.h` — location of + `CompositePoleFigureConfiguration_t` to extend. +- `Source/EbsdLib/LaueOps/LaueOps.h` — base-class API to extend. diff --git a/Code_Review/v3_stabilization_plan.md b/Code_Review/v3_stabilization_plan.md new file mode 100644 index 00000000..68802ffb --- /dev/null +++ b/Code_Review/v3_stabilization_plan.md @@ -0,0 +1,567 @@ +# EbsdLib v3.0.0 Stabilization Plan + +`topic/pole_figure_updates` is a major behavioral overhaul of EbsdLib's +pole-figure pipeline, IPF coloring, and Laue-class direction +conventions. The branch is feature-complete but has not yet been +hardened against downstream callers (DREAM3D-NX, SIMPLNX). This +document records the current state, the known gaps, and the concrete +steps to declare the branch stable enough to merge as the v3.0.0 +release. + +Living document — update as items get resolved. + +--- + +## What changed (1-paragraph summary) + +`LaueOps::_calcRodNearestOrigin` was rewritten in quaternion space to +fix an undefined-behavior bug for 180° rotations. Hexagonal and +trigonal direction triplets were swapped to the MTEX X||a* +convention. Several Laue classes (`3`, `4`, `6`, `23`, `32`) had +under-enumerated symmetry orbits expanded so each pole figure now +shows the full crystal-symmetry-equivalent set; this required bumping +`k_SymSize` constants for 4 of those classes and renaming default +pole-figure labels for `4/m` and `6/m`. `GriddedColorKey` was fixed +to honor caller-supplied `angleLimits`. A new `PUCMColorKey` was +added (BSD-3 port of wlenthe's reference implementation, matches +EDAX's perceptually uniform IPF colors). All TIFF outputs in apps +and tests switched to PNG via stb. The legend / pole-figure +comparison harness now emits per-class PNGs against MTEX and EDAX +references. + +Total: ~30 commits, ~5,000 LOC changes / additions. + +--- + +## Confidence assessment + +### High confidence (quantitative external validation) + +| Area | Validation | Result | +| --- | --- | --- | +| TSL IPF coloring | Pixel-diff vs `EDAX_TSL_IPF.bmp` (96×100 input, 12 phases) | 11/12 classes mean diff < 3/255; whole-image mean = 3.74; only 5.8% pixels differ | +| PUCM IPF coloring | Pixel-diff vs `EDAX_PUCM_IPF.bmp` | 9/12 classes mean diff < 3/255; whole-image mean = 9.01 | +| 180° FZ-reduction fix | New regression test on `(180°, 90°, 0°)` Euler input | RED → GREEN; physical orientation preserved through `getODFFZRod` | +| GriddedColorKey 3-arg path | 4 targeted regression tests covering: angleLimits passthrough, negative-eta classes, boundary chi-clamp, triclinic full-disk | All RED before fix, all GREEN after | +| C-axis IPF corner test | `IPFLegendTest::CAxisIsRed` across all 11 unique Laue classes | All produce pure red at chi=0 | + +### Medium confidence (visual MTEX comparison, no quantitative ground truth) + +| Area | What was checked | Caveat | +| --- | --- | --- | +| X||a* convention in hex/trig | Per-class IPF legend visual diff vs MTEX `ipfTSLKey` | MTEX uses a *different* TSL formula (polar/HSL); our agreement is at the convention level (vertex labels), not pixel-perfect. Documented in `coloring_schemes_vs_mtex.md`. | +| Direction triplet expansions for `3`, `6`, `32`, `4` | Visual pole-figure comparison vs MTEX with synthetic Eulers | Eyeball pass only — no canonical-textures assertion. | +| Pole-figure pipeline end-to-end | `PoleFigureLaueComparisonTest` generates one PF per class, MATLAB script generates MTEX equivalent | Visual side-by-side. | + +### Low confidence — known suspect, treat as "needs investigation" + +| Area | Symptom | Confidence drag | +| --- | --- | --- | +| Mono-c (`112/m`) | mean diff 31.82 (TSL) / 74.67 (PUCM) vs EDAX, ≥46% of pixels affected | Same outlier under TWO independent color schemes ⇒ phase-mapping bug, not formula bug. Likely b-setting vs c-setting axis convention mismatch in `MonoclinicOps`. | +| Tet `4/m` and ditet `4/mmm` PUCM | mean diff 10.05 / 11.78 vs EDAX_PUCM, while same classes match TSL exactly (mean ~1.5) | wlenthe-specific dispatch nuance; not yet diagnosed. | +| `CubicLowOps` 4th `{011}` typo fix | One-line change | Only verified through legend-image diff, no isolated unit test. | +| `getDefaultPoleFigureNames` renames | `<010>` → `<110>` (tet-low), `<11-20>/<2-1-10>` → `<10-10>/<11-20>` (hex-low) | Strings — any downstream code that string-matches the old labels will break silently. | +| Bulk behavior of `_calcRodNearestOrigin` rewrite | Tested for the 180° case only | The new quaternion path SHOULD produce equivalent FZ representatives for all inputs, but no round-trip / equivalence sweep verifies it. | + +--- + +## Risk register: things that may break in DREAM3D-NX / SIMPLNX + +1. **Pixel-exemplar tests** — anything that pixel-compares pole-figure or + IPF map output against a stored reference will fail. The reference + needs to be regenerated from this branch. +2. **Hard-coded RGB assertions** — any test asserting specific RGB + triples for specific orientations will fail for hex/trig classes + (X||a* convention shift) and for the 5 low-symmetry classes whose + `k_SymSize` changed. +3. **Pole-figure label assertions** — code that string-matches + `<010>`, `<11-20>`, or the old `<2-1-10>` label position will + silently take the wrong path. +4. **Mono-c displays anywhere** — will be visibly wrong vs OIM Analysis + reference output until fixed. +5. **TIFF consumers** — any tooling that reads `.tif`/`.tiff` output + from EbsdLib's apps now needs to read `.png`. +6. **`_calcRodNearestOrigin` and `getODFFZRod`** — different sym op may + be picked for an equivalent representation. Anything testing the + exact 4-component Rodrigues *value* will fail; tests of physical + equivalence (orientation matrix or quaternion equality) should pass. +7. **Hex/trig Bunge angles read by simplnx must be bridged inside + LaueOps, not at the file reader.** EbsdLib v3 internal hex/trig + is now X‖a* (matching Oxford and MTEX). All released DREAM3D / + DREAM3DNX / SIMPL / SIMPLNX versions normalized hex/trig to X‖a + at file read time (the +30° rule for Oxford). Strategy: keep + simplnx readers unchanged; LaueOps gains an `inputDataConvention` + parameter that defaults to `X‖a` (legacy) and applies the + transient `phi2 -= 30°` for hex/trig phases. Tracked as Phase 0 + below. Without this work every hex/trig pole figure / IPF / + Schmid factor / misorientation under v3 will be silently 30° + wrong on upgrade. +8. **Hex_Low / Trigonal_High / Trigonal_Low Oxford data has *always* + been broken in released DREAM3D.** The historical +30° rule in + simplnx only fires when the phase is `Hexagonal_High`. Trigonal + and hex-low Oxford imports never received the normalization, + silently producing 30°-rotated data for those phases. This is + pre-v3 buggery, surfaced by the convention work, and worth fixing + alongside v3 (P0.3). + +--- + +## Stabilization plan + +Ordered by priority. Each item is a discrete piece of work. + +### Phase 0: Hex/trig convention bridge inside LaueOps (release blockers) + +EbsdLib v3 swapped its hex/trig direction tables to the MTEX / Oxford +**X‖a\*** convention. EDAX/TSL/OIM Analysis and every prior released +version of EbsdLib used the **X‖a** convention. Bunge angles describing +the same physical orientation differ by a 30° rotation about the +c-axis between these two conventions. + +**Foundational guarantee from the released DREAM3D family.** Every +released version of DREAM.3D, DREAM3DNX, SIMPL, and SIMPLNX has +applied the +30° to phi2 normalization when reading Oxford `.ctf` / +`.h5oina` / HKL-tagged `.h5ebsd` files for hex phases. As a result, +**every hex/trig EulerAngles array stored in any `.dream3d` / SIMPL +HDF5 file produced by a released DREAM3D tool is in X‖a (TSL) form**. +The only escape is a hand-crafted `.ang` file authored against the +documented warning, which is explicitly out of scope as a user-policy +problem. + +That guarantee removes the entire legacy migration question. If the +v3 design treats absence-of-metadata as "data is in X‖a (TSL) form", +that interpretation is correct by codebase history for 100% of files +produced by released tools. + +**Strategy.** Do *not* change simplnx file readers. Existing pipelines +keep working. The convention bridge lives inside EbsdLib v3's LaueOps: +LaueOps gains an `inputDataConvention` parameter that defaults to +`X‖a` (legacy). For hex/trig phases, LaueOps applies a transient +`phi2 -= 30°` to a local copy of the orientation before consuming it +with the new X‖a* direction tables, then proceeds normally. Filters +that go through LaueOps inherit correct behavior with no code change. +A filter that wants to opt into X‖a* input (e.g. data imported from +MTEX) sets the parameter explicitly. + +Ground truth and methodology: `Data/Pole_Figure_Validation/ReadMe.md` +and `Docs/x_parallel_a_star_convention.svg`. + +- [ ] **P0.1 — Add `HexConvention` parameter to LaueOps.** + Define `enum class HexConvention { XParallelA, XParallelAStar };` + on `LaueOps` (or a top-level `ebsdlib::HexConvention`) with default + `XParallelA`. Add `setInputDataConvention(HexConvention)` / + `getInputDataConvention()` accessors. + + For non-hex/trig Laue classes the parameter is a no-op (the + convention only affects basal-plane geometry). The accessor is + still present so callers don't have to switch on Laue class before + setting it — filters set it once on each LaueOps instance. + +- [ ] **P0.2 — Apply the convention shift inside hex/trig LaueOps.** + Implement the transient `phi2 -= 30°` (radians) at the entry of + every hex/trig LaueOps method that consumes a Bunge angle and + produces a crystal-frame-dependent result. At minimum: + + - `generateSphereCoordsFromEulers` + - `generateIPFColor` (all overloads) + - `generateRodriguesColor` + - `getMDFFZRod`, `getODFFZRod` + - `getNearestQuat`, `getMisoQuat` + - `getSchmidFactorAndSS`, `getmPrime`, `getF1`, `getF1spt`, `getF7` + + Apply only when `m_InputDataConvention == XParallelA` and the + Laue class is one of `Hexagonal_High`, `Hexagonal_Low`, + `Trigonal_High`, `Trigonal_Low`. The shift is on a local copy — + the caller's data is never mutated. + + Methods that take quaternions, Rodrigues vectors, or orientation + matrices directly (not Bunge angles) don't need the shift at the + entry point — those representations are already convention-bound + by the LaueOps instance they were produced under. (See Filter + Audit P0.4.) + +- [ ] **P0.3 — Extend the historical +30° rule in simplnx to + Hex_Low / Trigonal_High / Trigonal_Low.** + Independent of the v3 convention work, the existing simplnx code + in `ReadCtfData.cpp:138`, `ReadH5OinaData.cpp:42`, and + `ReadH5Ebsd.cpp:237` only applies the +30° normalization when the + phase is `Hexagonal_High`. `Hexagonal_Low`, `Trigonal_High`, and + `Trigonal_Low` use the same basal-plane convention and have always + needed the same normalization. This was already broken pre-v3 but + doesn't get noticed because trigonal samples are uncommon. + + Update the predicate to cover all four: + + crystalStructures[cellPhases[i]] == Hexagonal_High || + crystalStructures[cellPhases[i]] == Hexagonal_Low || + crystalStructures[cellPhases[i]] == Trigonal_High || + crystalStructures[cellPhases[i]] == Trigonal_Low + + This is a fix to existing simplnx logic, not a v3-specific change. + Worth landing alongside v3 since the area is in scope. + +- [ ] **P0.4 — Filter audit: which filters actually need to interact + with the convention parameter, and which are convention-invariant.** + + *Convention-bound (must propagate `XParallelA` default to LaueOps; + hex/trig path is affected):* + - Generate IPF Colors + - Write/Generate Pole Figure + - Generate IPF Legend (renders in v3 X‖a* — no input data, no shift, + already correct after the LaueOps direction-table change) + - Find Misorientations / Avg Misorientations / Feature Reference + Misorientations / Boundary Misorientation + - Find Average Orientations + - Generate Misorientation Colors (Patala 2010) + - Find Schmid Factors + - Find ODF / Texture Components / MDF + + *Convention-invariant (no change needed):* + - Convert Orientations (Euler ↔ Quat ↔ Rod ↔ AxisAngle ↔ Matrix) + - Find Average C-Axis + - Find KAM (angle-only) + - Misorientation magnitude / disorientation angle (scalar, sym-invariant) + - Anything operating only on cubic, tetragonal, or orthorhombic phases + + Default `XParallelA` means no filter code change is *required* for + the convention-bound list to behave correctly on legacy data. The + audit is to confirm each filter actually passes through LaueOps + rather than reimplementing the math privately. Any filter that + reimplements crystal-frame math without going through LaueOps is a + silent landmine. + +- [ ] **P0.5 — User-facing UI and labeling for the convention.** + - Filter UI shows the convention being applied as read-only status: + *"Input EulerAngles convention: X‖a (legacy DREAM3D, default)"* + with an *"Override…"* affordance for advanced users. + - Pole-figure and IPF outputs embed the rendering convention in + the image title or caption: e.g. + *"Pole Figure — Phase: Mg (Hexagonal-High 6/mmm) — rendered in X‖a* (MTEX/Oxford)"*. + - An optional *"render in input convention"* toggle on PF/IPF + filters skips the LaueOps conversion for users who want to + visually verify what's literally in the EulerAngles array. + + This addresses the verification-friction concern. Most users never + touch the override; the default labeling means a user opening a + PF in MATLAB knows what convention the DREAM3D-NX render is in, + and what to convert if they want to compare. + +- [ ] **P0.6 — Update simplnx reader documentation.** + Files: + - `simplnx/src/Plugins/OrientationAnalysis/docs/ReadCtfDataFilter.md` + - `simplnx/src/Plugins/OrientationAnalysis/docs/ReadChannel5DataFilter.md` + - `simplnx/src/Plugins/OrientationAnalysis/docs/ReadH5OinaDataFilter.md` + - `simplnx/src/Plugins/OrientationAnalysis/docs/ReadH5EbsdFilter.md` + - the corresponding `.ang` reader doc + - The relevant Generate Pole Figure / IPF Color / Misorientation / + Schmid Factor / etc. filter docs + + The reader docs are mostly unchanged — readers still apply the +30° + Oxford normalization. What changes is the description of what + happens *downstream*: the filter docs (per P0.4) should mention the + hex convention story and link to + `Data/Pole_Figure_Validation/ReadMe.md` and + `Docs/x_parallel_a_star_convention.svg`. + + Correct the convention attribution table everywhere it appears: + + | Convention | Tools / acquisition systems | + | ---------- | --------------------------- | + | `X‖a` | EDAX / TSL / OIM Analysis, pre-v3 EbsdLib, all released DREAM3D family stored hex/trig in this form | + | `X‖a*` | Oxford Instruments / HKL (Channel 5, AZtec), MTEX, EbsdLib v3+ | + +### Phase 1: Surface the unknown unknowns + +- [ ] **P1.1 — Build DREAM3D-NX against this branch and run its tests.** + Build dir: `/Users/mjackson/Workspace7/DREAM3D-Build/NX-Com-Qt69-Vtk95-Rel-EbsdLib`, + configured from + `cd /Users/mjackson/Workspace7/DREAM3DNX && cmake --preset NX-Com-Qt69-Vtk95-Rel-EbsdLib`. + Capture every failing test with file:line and the kind of failure + (pixel diff, RGB assertion, label string, runtime crash). The + classification matters: pixel-exemplar failures → regenerate goldens; + RGB / label assertions → real downstream change, requires migration + notes; runtime crashes → real bug that must be fixed before release. +- [ ] **P1.2 — Same for SIMPLNX** if it has its own test set independent + of DREAM3D-NX. + +### Phase 2: Fix the known issues + +- [ ] **P2.1 — Mono-c.** Diagnose b-setting vs c-setting in + `MonoclinicOps`. The .ang file + `Data/ipf_color_tests/AllLaueClasses_RandO.ang` contains a mono-c + phase (Phase 11, Symmetry=2 c-setting); use it as the reproducer. + Fix should bring mean diff against `EDAX_TSL_IPF.bmp` and + `EDAX_PUCM_IPF.bmp` for the mono-c strip down from 31.82 / 74.67 to + the same ~1–3 range the other classes show. +- [ ] **P2.2 — Tet 4/m and ditet 4/mmm under PUCM.** Diagnose why these + two diverge under PUCM (mean ≈ 10–12) when every other class is at + ~1–3. Likely a wlenthe-specific dispatch detail; the same classes + match TSL exactly so the orientation/symmetry side is fine. + +### Phase 3: Harden tests + +- [ ] **P3.1 — Canonical orientations test.** Add a test that asserts + IPF-Z RGB AND pole-figure position for 10–15 textbook textures, + cross-referenced against MTEX or DREAM3D-NX. Define the textbook + Bunge tuples (Cube, Goss, Brass, Copper, S, etc.) once in the + test, then feed them through `Texture::CalculateODFData` to expand + each component into a small cloud — that exercises the same code + path real callers use for orientation grouping rather than testing + isolated Euler triples. + +| Texture | Crystal | Orientation | Expected pole position | +| ------- | ------- |--|------------------- | +| "Brass" | Ebsd::CrystalStructure::Cubic_High | 35.0, 45.0, 0.0 | | +| "Copper" | Ebsd::CrystalStructure::Cubic_High | 90.0, 35.0, 45.0 | | +| "Goss" | Ebsd::CrystalStructure::Cubic_High | 0.0, 45.0, 0.0 | | +| "Cube" | Ebsd::CrystalStructure::Cubic_High | 0.0, 0.0, 0.0 | | +| "S" | Ebsd::CrystalStructure::Cubic_High | 59.0, 37.0, 63.0 | | +| "S1" | Ebsd::CrystalStructure::Cubic_High | 55.0, 30.0, 65.0 | | +| "S2" | Ebsd::CrystalStructure::Cubic_High | 45.0, 35.0, 65.0 | | +| "RC(rd1)" | Ebsd::CrystalStructure::Cubic_High | 0.0, 20.0, 0.0 | | +| "RC(rd2)" | Ebsd::CrystalStructure::Cubic_High | 0.0, 35.0, 0.0 | | +| "RC(nd1)" | Ebsd::CrystalStructure::Cubic_High | 20.0, 0.0, 0.0 | | +| "RC(nd2)" | Ebsd::CrystalStructure::Cubic_High | 35.0, 0.0, 0.0 | | +| "P" | Ebsd::CrystalStructure::Cubic_High | 70.0, 45.0, 0.0 | | +| "Q" | Ebsd::CrystalStructure::Cubic_High | 55.0, 20.0, 0.0 | | +| "R" | Ebsd::CrystalStructure::Cubic_High | 55.0, 75.0, 25.0 | | + + Each texture asserts: IPF-Z RGB within ±3/255 of expected, pole + positions within 1° of expected. Pole positions are + projection-space (x,y) — they survive the future PF rendering + rewrite. Sources: Bunge, Randle & Engler textbooks, MTEX example + datasets. + +- [ ] **P3.2 — Symmetry-equivalence sweep test.** For each Laue class, + generate 1000 random orientations and assert: (a) all 24/12/8/etc. + symmetry-equivalent orientations of an input give the same IPF + color and same pole-figure position; (b) `getODFFZRod` of an + orientation and any sym-equivalent of it returns the same physical + rotation (compare via quaternion `|q1·q2|` ≈ 1). + +- [ ] **P3.3 — Cubic-low {011} round-trip.** The one-line typo fix to + the 4th {011} direction in `CubicLowOps` deserves an isolated test: + for cubic m-3, the 12 {011} directions are well-defined; assert + `generateSphereCoordsFromEulers` (or equivalent) emits all 12 unique + positions for an identity orientation. + +- [ ] **P3.4 — IPF exemplar regeneration.** Once P2.1 / P2.2 land + and the canonical-orientations test passes, regenerate the IPF + *coloring* exemplars in DREAM3D-NX. Document which exemplars + were regenerated and why in the commit message. + + **Pole-figure pixel exemplars are deliberately NOT regenerated + here** — see "Future work" below. The PF *rendering* technique + is being rewritten away from Lambert-square; regenerating PF + pixel goldens against the current renderer would just create + goldens we throw away in the next release. Consumers should + pin against position-space assertions (see P3.1, P3.2) until + the new PF renderer lands. + +### Phase 4: Documentation and release prep + +- [ ] **P4.1 — `RELEASE_NOTES.md` for v3.0.0.** Draft below; update with + any P1 findings. +- [ ] **P4.2 — Migration guide for downstream.** Concrete code changes + callers must make to upgrade — see "Migration notes" below. +- [ ] **P4.3 — Bump `EbsdLibVersion.cpp`.** Update version string to + `3.0.0` and verify SOVERSION on the dynamic library is bumped if + the project uses semantic versioning for its `.dylib`/`.so`/`.dll`. +- [ ] **P4.4 — Squash the per-step commits if desired.** The branch + has ~30 commits; some are exploratory. Consider rebasing into a + cleaner narrative before merge. + +--- + +## v3.0.0 release notes draft + +### Breaking changes + +1. **Hexagonal and trigonal direction conventions changed to X||a\*.** + Previously EbsdLib used real-space `a` along the X axis (matching + EDAX / TSL / OIM Analysis); now uses reciprocal-space `a*` along X + (matching MTEX and Oxford Instruments / HKL acquisition systems). + Affects: `HexagonalOps`, `HexagonalLowOps`, `TrigonalOps`, + `TrigonalLowOps` direction vectors; output pole-figure positions + for hex/trig phases now match MTEX exactly. + + **API surface change:** `LaueOps` gains an + `inputDataConvention` parameter (default `X‖a`, matching every + prior released DREAM3D family file). Filters that pass Bunge + angles through LaueOps inherit correct legacy behavior with no + code change; filters or callers wanting MTEX-form input set the + parameter to `X‖a*` explicitly. Simplnx file readers are + unchanged. Existing `.dream3d` files just work — their hex/trig + EulerAngles are in X‖a form by codebase guarantee, which is the + default LaueOps assumes. + + Methodology and infographic: + `Data/Pole_Figure_Validation/ReadMe.md` and + `Docs/x_parallel_a_star_convention.svg`. + +2. **`getDefaultPoleFigureNames` renamed for two classes.** + - `TetragonalLowOps`: `<010>` → `<110>` + - `HexagonalLowOps`: `<11-20>` → `<10-10>`, `<2-1-10>` → `<11-20>` + Code matching the old strings will silently take the wrong path. + +3. **`k_SymSize` increased for 4 Laue classes.** + Pole figures now show the full crystal-symmetry orbit (was + under-enumerated): + - `TetragonalLowOps`: `{2,2,2}` → `{2,4,4}` + - `HexagonalLowOps`: `{2,2,2}` → `{2,6,6}` + - `TrigonalOps`: `{2,2,2}` → `{2,6,6}` + - `TrigonalLowOps`: `{2,2,2}` → `{2,6,6}` + Output array sizes from `generateSphereCoordsFromEulers` change + accordingly. + +4. **`LaueOps::_calcRodNearestOrigin` rewritten in quaternion space.** + Fixes undefined behavior for 180° input rotations. Output + represents the same physical orientation as before for non-180° + inputs but the specific 4-component Rodrigues representation may + differ (different equivalent sym-op chosen). + +5. **TIFF outputs replaced with PNG everywhere in apps and tests.** + `make_ipf`, `generate_pole_figure`, `generate_ipf_legends`, etc. + now write `.png`; output filenames in tests follow the same. + +6. **`make_ipf` gained a 3rd optional argument `tsl|pucm`.** + Default is `tsl` (backward-compatible behavior). + +### New features + +- **`PUCMColorKey`** — perceptually uniform IPF color scheme (EDAX + PUCM-compatible), implemented via a vendored BSD-3 port of + wlenthe's reference code. +- **`GriddedColorKey`** — decorator that wraps any `IColorKey` to + produce 1° flat-shaded cells (MTEX-style rendering). +- **`NolzeHielscherColorKey`** — academic Nolze-Hielscher 2016 + implementation. +- **`PngWriter`** utility — STB-backed. +- **EDAX-quality reference data** in `Data/ipf_color_tests/` for + regression testing. + +### Bug fixes + +- 180° rotation FZ-reduction undefined behavior (commit `6c831e1`). +- `CubicLowOps` 4th `{011}` direction typo causing 10/12 instead of + 12/12 unique poles (commit `873e61c` and ancestors). +- `GriddedColorKey` 3-arg overload silently using cubic angle limits + for every Laue class (commit `2c20533`). +- Stray vertical pixel column in 622 IPF legend (commit `873e61c`). + +### Known issues (deferred to v3.1) + +- Mono-c (point group `112/m`) renders incorrectly vs EDAX reference + (likely b-setting vs c-setting axis convention bug in + `MonoclinicOps`). +- Tet 4/m and ditet 4/mmm under PUCM color key have minor (mean ≈ 10 + per channel) divergence from EDAX_PUCM reference. + +### Explicitly out of scope for v3.0 — see "Future work" + +- Pole-figure rendering technique remains the existing Lambert-square + pipeline. A rewrite toward an MTEX-style direct-projection / + contouring renderer is planned for a subsequent release. PF + pixel-exemplar consumers should expect another breaking change + there and should pin to crystallographic-position assertions + (P3.1 / P3.2 style) rather than to v3.0 PF pixel output. +- IPF legend images leave significant whitespace margin around the + fundamental sector for several Laue classes. Tightening the legend + rendering so the FZ sector fills the canvas is a targeted follow-up. + +--- + +## Migration notes for downstream callers + +For DREAM3D-NX, SIMPLNX, and other consumers upgrading from EbsdLib +v2.x to v3.0: + +| Old | New | Action | +| --- | --- | --- | +| `TiffWriter::WriteColorImage(...)` | `PngWriter::WriteColorImage(...)` | Replace include + namespace; output extension `.tiff` → `.png`. `TiffWriter` still exists for callers that want TIFF specifically. | +| Pole-figure label `<010>` (tet-low) | `<110>` | Update string matchers. | +| Pole-figure label `<11-20>` (hex-low) | `<10-10>` | Update string matchers. | +| Hard-coded RGB exemplars for hex/trig phases | Regenerate against v3.0 | Automate via `IPFLegendTest::*Compare_MTEX_IPF_Legends` | +| Pixel exemplars for pole figure rendering | Pin to position-space assertions (projection x,y within tolerance), not to v3.0 PF pixel output | The PF renderer is being rewritten in a follow-up release; v3.0 PF goldens would be invalidated again. See "Future work" §F1. | +| Direct calls to `_calcRodNearestOrigin` testing the 4-component Rodrigues | Convert to quaternion / orientation-matrix comparison | The new code may produce a different sym-equivalent representation | +| Existing IPF coloring tests asserting specific RGB on hex/trig phases | Re-run under v3 with default LaueOps `inputDataConvention = X‖a` | Default convention matches legacy stored data; if the test continues to fail, the old assertion encoded a pre-v3 bug. Use the canonical-orientations test (P3.1) as the fresh reference. | +| Bunge angles passed directly to `LaueOps::generateSphereCoordsFromEulers` and similar APIs | Same call signature; LaueOps now interprets hex/trig Bunge angles per `inputDataConvention` (default `X‖a`) | Legacy code keeps working with no change. Callers feeding MTEX-form data must explicitly call `setInputDataConvention(HexConvention::XParallelAStar)`. | +| Stored hex/trig EulerAngles in legacy `.dream3d` files | No action required | All released DREAM3D family versions stored hex/trig in X‖a (TSL) form via the +30° Oxford normalization. The default LaueOps convention matches. Hex/trig pole figures and IPF colors render correctly without any user intervention. | + +--- + +## DREAM3D-NX validation harness (Phase 1.1) + +Build: + +```bash +cd /Users/mjackson/Workspace7/DREAM3DNX +cmake --preset NX-Com-Qt69-Vtk95-Rel-EbsdLib +cmake --build /Users/mjackson/Workspace7/DREAM3D-Build/NX-Com-Qt69-Vtk95-Rel-EbsdLib +``` + +Run: + +```bash +cd /Users/mjackson/Workspace7/DREAM3D-Build/NX-Com-Qt69-Vtk95-Rel-EbsdLib +ctest --output-on-failure 2>&1 | tee /tmp/dream3dnx_v3_failures.log +``` + +Triage failures into three buckets: + +1. **Pixel-exemplar failures** (test does an HDF5 / image diff against + stored reference) — almost all expected; regenerate references and + verify visually. +2. **Hard-coded RGB or label assertions** — these are real + conventional changes; document in migration notes and update + downstream tests. +3. **Runtime errors / crashes / NaN propagation** — real bugs; must + fix before declaring the branch stable. + +Capture the bucket counts in this document under a "Phase 1.1 results" +heading once the run completes. + +--- + +## Future work (post-v3.0) + +These are out of scope for the v3.0 stabilization but are tracked +here because they shape what testing we do (and don't do) for v3.0. + +### F1 — Pole-figure rendering rewrite + +Replace the Lambert-square accumulator with a direct-projection / +MTEX-style renderer (likely density estimation in spherical +coordinates with smooth contouring rather than a square binning +grid). This will change PF *pixel output* again, which is why +P3.4 explicitly skips regenerating PF goldens — there's no point +producing v3.0 PF pixel exemplars that will be invalidated by the +next release. Crystallographic-position correctness (P3.1, P3.2) +is the durable contract; pixel output is not. + +Candidate libraries / references: MTEX `plotPDF` source, +spherical kernel density estimators, native MATLAB-equivalent +contouring. `Texture.hpp` orientation generators feed naturally +into either renderer. + +### F2 — IPF legend canvas-fill rendering + +Several Laue classes' IPF legends currently take up only a small +fraction of the output image (the FZ sector is drawn at its +"natural" eta-chi extent inside a fixed canvas, leaving large +white margins). Targeted change: compute the FZ sector's bounding +box in eta-chi space and stretch the rendering so the sector +fills the canvas, producing a tight, label-ready legend image. +Per-class because the FZ sector aspect ratio varies. + +This is non-disruptive to API or color values — it's a +rendering-only change — so it can land independently of F1 and +of any v3.x point release. + +--- + +## Open questions tracked elsewhere + +See `Code_Review/coloring_schemes_vs_mtex.md` for the per-Laue-class +comparison details and the running list of color-scheme convention +notes. That document is the more granular companion to this plan. diff --git a/Data/IPF_Legend/MTEX_Reference/cubic_NH_HSV_X.tiff b/Data/IPF_Legend/MTEX_Reference/cubic_NH_HSV_X.tiff new file mode 100644 index 00000000..a361166d Binary files /dev/null and b/Data/IPF_Legend/MTEX_Reference/cubic_NH_HSV_X.tiff differ diff --git a/Data/IPF_Legend/MTEX_Reference/cubic_NH_HSV_Y.tiff b/Data/IPF_Legend/MTEX_Reference/cubic_NH_HSV_Y.tiff new file mode 100644 index 00000000..b5f8290e Binary files /dev/null and b/Data/IPF_Legend/MTEX_Reference/cubic_NH_HSV_Y.tiff differ diff --git a/Data/IPF_Legend/MTEX_Reference/cubic_NH_HSV_Z.tiff b/Data/IPF_Legend/MTEX_Reference/cubic_NH_HSV_Z.tiff new file mode 100644 index 00000000..9a715f4c Binary files /dev/null and b/Data/IPF_Legend/MTEX_Reference/cubic_NH_HSV_Z.tiff differ diff --git a/Data/IPF_Legend/MTEX_Reference/cubic_TSL_X.tiff b/Data/IPF_Legend/MTEX_Reference/cubic_TSL_X.tiff new file mode 100644 index 00000000..10d9a47b Binary files /dev/null and b/Data/IPF_Legend/MTEX_Reference/cubic_TSL_X.tiff differ diff --git a/Data/IPF_Legend/MTEX_Reference/cubic_TSL_Y.tiff b/Data/IPF_Legend/MTEX_Reference/cubic_TSL_Y.tiff new file mode 100644 index 00000000..10d9a47b Binary files /dev/null and b/Data/IPF_Legend/MTEX_Reference/cubic_TSL_Y.tiff differ diff --git a/Data/IPF_Legend/MTEX_Reference/cubic_TSL_Z.tiff b/Data/IPF_Legend/MTEX_Reference/cubic_TSL_Z.tiff new file mode 100644 index 00000000..e999d91f Binary files /dev/null and b/Data/IPF_Legend/MTEX_Reference/cubic_TSL_Z.tiff differ diff --git a/Data/IPF_Legend/MTEX_Reference/hexagonal_NH_HSV_Z.tiff b/Data/IPF_Legend/MTEX_Reference/hexagonal_NH_HSV_Z.tiff new file mode 100644 index 00000000..b8ce4983 Binary files /dev/null and b/Data/IPF_Legend/MTEX_Reference/hexagonal_NH_HSV_Z.tiff differ diff --git a/Data/IPF_Legend/MTEX_Reference/hexagonal_TSL_Z.tiff b/Data/IPF_Legend/MTEX_Reference/hexagonal_TSL_Z.tiff new file mode 100644 index 00000000..ab42eb35 Binary files /dev/null and b/Data/IPF_Legend/MTEX_Reference/hexagonal_TSL_Z.tiff differ diff --git a/Data/IPF_Legend/MTEX_Reference/orthorhombic_NH_HSV_Z.tiff b/Data/IPF_Legend/MTEX_Reference/orthorhombic_NH_HSV_Z.tiff new file mode 100644 index 00000000..148cb930 Binary files /dev/null and b/Data/IPF_Legend/MTEX_Reference/orthorhombic_NH_HSV_Z.tiff differ diff --git a/Data/IPF_Legend/MTEX_Reference/orthorhombic_TSL_Z.tiff b/Data/IPF_Legend/MTEX_Reference/orthorhombic_TSL_Z.tiff new file mode 100644 index 00000000..28ae8e5c Binary files /dev/null and b/Data/IPF_Legend/MTEX_Reference/orthorhombic_TSL_Z.tiff differ diff --git a/Data/Pole_Figure_Validation/ReadMe.md b/Data/Pole_Figure_Validation/ReadMe.md new file mode 100644 index 00000000..d732310c --- /dev/null +++ b/Data/Pole_Figure_Validation/ReadMe.md @@ -0,0 +1,221 @@ +# Pole Figure Position-Space Validation + +## Why this exists + +The EbsdLib v3.0 release includes major behavioral changes to the +pole-figure pipeline: hexagonal/trigonal direction conventions shifted to +`X||a*` (matching MTEX), `LaueOps::_calcRodNearestOrigin` was rewritten in +quaternion space to fix an undefined-behavior bug at 180° rotations, +several low-symmetry Laue classes had their symmetry orbits expanded, and +the underlying sphere-coordinate generation changed for every Laue class. + +A pixel-level pole-figure comparison would not survive the planned +follow-on rewrite of the renderer (Lambert-square → MTEX-style direct +projection, see `Code_Review/v3_stabilization_plan.md` §F1). Instead this +directory holds a **position-space** validation: for every `(canonical +orientation × Laue class × default plane family)` bucket, the projected +`(x, y)` positions of the symmetry-equivalent poles on the unit disk are +compared against MTEX, which we treat as crystallographic ground truth. +Position-space tests survive any future change to the pixel renderer. + +The validation is checked at every test run via +`Source/Test/PoleFigurePositionTest.cpp`. The current state of the world: + +> 396 buckets compared, 396 within tolerance `1e-5`, worst max-distance +> across all 1752 emitted points: `6.08 × 10⁻⁸`. + +## What's in this directory + +| File | Role | +| ---- | ---- | +| `pole_figure_euler_data.dream3d` | DREAM3D-NX HDF5 holding 12 EMsoftSO3-sampled orientation clouds (Cube, Goss, Brass, Copper, S, S1, S2, R, RC_rd1, RC_rd2, RC_nd1, RC_nd2). Currently informational — the C++ test uses ideal Bunge tuples baked into source, but this file is the canonical source the tuples are mirrored from. | +| `pole_figure_data.d3dpipeline` | The DREAM3D-NX pipeline JSON that produced the `.dream3d` file. Re-run via DREAM3D-NX if the orientation list needs to change. | +| `mtex_pole_figure_positions.m` | MATLAB script. Generates the golden CSV from MTEX. | +| `run_mtex_pole_figure_positions.sh` | zsh wrapper that launches MATLAB headlessly with MTEX initialized. | +| `mtex_pole_figure_positions.csv` | **The committed golden.** Loaded by `PoleFigurePositionTest` at test time and used as the comparison target. Regenerated by the MATLAB script above; the only reason to regenerate is if the canonical orientation list, Laue dispatch, or plane-family table changes. | +| `compare_pf_positions.py` | Standalone Python comparator. Diagnostic tool — not used by CI. Useful when investigating a regression because it prints the per-bucket worst-case pairs. The C++ test does the same comparison in-process, so day-to-day CI does not need this script. | +| `ReadMe.md` | This file. | + +## CSV schema + +Both `mtex_pole_figure_positions.csv` and the EbsdLib emission share this +schema, one row per projected pole: + +```csv +orient_id,orient_name,rotation_point_group,symmetry_name,plane_family,x,y +0,Cube,432,Cubic_High m-3m,<001>,1.00000000,0.00000000 +0,Cube,432,Cubic_High m-3m,<001>,-1.00000000,-0.00000000 +0,Cube,432,Cubic_High m-3m,<001>,0.00000000,1.00000000 +... +``` + +| Column | Meaning | +| ----------------------- | ------- | +| `orient_id` | 0-based index into the canonical orientation table. | +| `orient_name` | Human-readable label: `Cube`, `Goss`, `Brass`, `Copper`, `S`, `S1`, `S2`, `R`, `RC_rd1`, `RC_rd2`, `RC_nd1`, `RC_nd2`. | +| `rotation_point_group` | EbsdLib rotation point group string (`432`, `622`, `-3m`, etc.). The bucket join key. | +| `symmetry_name` | Human-readable Laue class. Informational — EbsdLib and MTEX do not always use identical strings here, and the comparison does not depend on the value. | +| `plane_family` | EbsdLib `getDefaultPoleFigureNames()` label (e.g. `<001>`, `<10-10>`). The bucket join key, must match exactly between sides. | +| `x`, `y` | Stereographic projection of the symmetry-equivalent direction onto the unit disk; 8 decimals. | + +The bucket key for comparison is `(orient_id, rotation_point_group, plane_family)`. + +## Canonical orientation table + +| `orient_id` | Name | Bunge (φ₁, Φ, φ₂) deg | +| ----------- | --------- | --------------------- | +| 0 | Cube | (0, 0, 0) | +| 1 | Goss | (0, 45, 0) | +| 2 | Brass | (35, 45, 0) | +| 3 | Copper | (90, 35, 45) | +| 4 | S | (59, 37, 63) | +| 5 | S1 | (55, 30, 65) | +| 6 | S2 | (45, 35, 65) | +| 7 | R | (55, 75, 25) | +| 8 | RC_rd1 | (0, 20, 0) | +| 9 | RC_rd2 | (0, 35, 0) | +| 10 | RC_nd1 | (20, 0, 0) | +| 11 | RC_nd2 | (35, 0, 0) | + +These are the EMsoftSO3Sampler centers used to sample the cloud +orientations in `pole_figure_euler_data.dream3d`. + +## Per-Laue-class plane-family table + +`PoleFigurePositionTest` and `mtex_pole_figure_positions.m` must agree on +this table to the character — it's the bucket-join key. EbsdLib's source +of truth is `LaueOps::getDefaultPoleFigureNames()`; MTEX mirrors it in +the script's `laue` struct. Hex/trig classes use the v3 `X||a*` +convention. + +| `rotation_point_group` | Laue class | Family 0 | Family 1 | Family 2 | +| ---------------------- | -------------------- | --------- | ---------- | ---------- | +| `432` | Cubic_High m-3m | `<001>` | `<011>` | `<111>` | +| `23` | Cubic_Low m-3 | `<001>` | `<011>` | `<111>` | +| `622` | Hexagonal_High 6/mmm | `<0001>` | `<10-10>` | `<2-1-10>` | +| `6` | Hexagonal_Low 6/m | `<0001>` | `<10-10>` | `<11-20>` | +| `32` | Trigonal_High -3m | `<0001>` | `<0-110>` | `<1-100>` | +| `3` | Trigonal_Low -3 | `<0001>` | `<-1-120>` | `<2-1-10>` | +| `422` | Tetragonal_High 4/mmm| `<001>` | `<100>` | `<110>` | +| `4` | Tetragonal_Low 4/m | `<001>` | `<100>` | `<110>` | +| `222` | OrthoRhombic mmm | `<001>` | `<100>` | `<010>` | +| `2` | Monoclinic 2/m | `<001>` | `<100>` | `<010>` | +| `1` | Triclinic -1 | `<001>` | `<100>` | `<010>` | + +## Methodology details that matter + +### Stereographic projection convention + +Both sides project upper-hemisphere unit vectors onto the disk via: + +``` +if (z < 0) { x, y, z = -x, -y, -z; } // antipodal fold to upper hemisphere +px = x / (1 + z) +py = y / (1 + z) +``` + +This is the same formula used by +`Source/EbsdLib/Utilities/ComputeStereographicProjection.cpp` for actual PF +rendering; the MATLAB script reproduces it explicitly. + +### Symmetry-orbit deduplication + +MTEX's `symmetrise(m, cs)` returns one entry per group element — for a +pole that lies on a symmetry element (e.g. the `[001]` direction under +m-3m sits on a 4-fold axis), several group elements stabilize the pole +and produce duplicate vectors. EbsdLib emits the unique orbit +(`|G| / |stabilizer|` entries). The MATLAB script deduplicates the +`symmetrise` output before projecting so the row counts agree per bucket. + +### Cartesian normalization + +MTEX's `Miller(h, k, l, cs)` is in lattice units — `Miller([1 1 1])` has +cartesian length √3, `Miller([0 0 0 1])` for hex with c=1.6 has length +1.6. EbsdLib explicitly normalizes its hardcoded direction vectors. The +MATLAB script normalizes after `ori * mSym` so both sides project +unit-length vectors. + +### Equator antipode canonicalization + +Stereographic projection sends equator points (z = 0) to the boundary +circle. The `if (z < 0)` fold rule is FP-unstable when z is essentially +zero — antipodal pairs `(+v, -v)` on the equator can land at either +`(x, y)` or `(-x, -y)` depending on which side of zero a rounding error +lands on. Both representations refer to the same crystallographic +direction. The comparator (both Python diagnostic and C++ test) folds +equator points to a canonical antipode (prefer y > 0; ties broken by +x > 0) before matching. + +### Comparison + +For each bucket key, the comparator runs greedy nearest-neighbor matching +between the EbsdLib points and the MTEX points (set sizes are ≤ 24, so +brute force is fine), and reports the maximum matched distance. The C++ +test asserts every bucket's worst-case distance is below `1e-5`. + +## Regenerating the golden + +You only need to regenerate `mtex_pole_figure_positions.csv` if the +canonical orientation list, the Laue dispatch, or the plane-family table +changes — i.e. if the schema of what's being validated changes. Routine +EbsdLib code changes do not need a golden regeneration. + +To regenerate: + +```bash +./run_mtex_pole_figure_positions.sh +``` + +This launches MATLAB headlessly, runs `startup_mtex`, then runs +`mtex_pole_figure_positions.m`, which writes +`mtex_pole_figure_positions.csv` into this same directory. After +regeneration, run the test: + +```bash +ctest -R "EbsdLib::PoleFigurePositionTest" --verbose +``` + +Inspect any per-bucket failures with the diagnostic comparator: + +```bash +python3 compare_pf_positions.py \ + /Testing/Temporary/PoleFigurePositions/ebsdlib_pole_figure_positions.csv \ + Data/Pole_Figure_Validation/mtex_pole_figure_positions.csv \ + --tol 1e-5 --top 30 +``` + +If the regenerated golden differs in any way that is *not* explained by +genuine convention agreement (e.g. an unexplained sign flip on an +interior point), do not commit the new golden — investigate first. +The whole point of the golden is that it is independent ground truth; +auto-rolling it forward to "make the test pass" defeats the purpose. + +## Troubleshooting / Common patterns + +### Per-bucket count mismatch + +EbsdLib and MTEX disagree on how many points a bucket should have. Check: +- Did `LaueOps::getNumSymmetry()` change for the affected Laue class? +- Did `getDefaultPoleFigureNames()` change a label, breaking the bucket-join key? +- Is MTEX's `symmetrise` returning duplicates because the dedup step in + the MATLAB script broke? + +### Worst pairs are all `(±x, ±y) ↔ (∓x, ∓y)` on the unit circle + +That's the equator-antipode FP issue. The canonicalization step should +catch it. If it isn't, the equator detection threshold (`equatorEps = +1e-5`) may need adjusting, or the rotation result may be returning +sample-frame vectors with `z` slightly outside the expected range. + +### Worst pairs have magnitudes outside the unit disk on the MTEX side + +Cartesian-normalization step in the MATLAB script is not firing. +Re-check that `mag = sqrt(xs.^2 + ys.^2 + zs.^2)` is being applied to +the post-`ori * mSym` vector and that `xs ./ mag` etc. are stored back. + +### Worst pairs have a clean reflection or rotation on every interior point + +That's a real convention disagreement — most likely the Bunge convention +or the sample reference frame. Use the diagnostic comparator to confirm +it's systematic across all orientations, then the prior conversation +in `Code_Review/coloring_schemes_vs_mtex.md` is a starting point. diff --git a/Data/Pole_Figure_Validation/compare_pf_positions.py b/Data/Pole_Figure_Validation/compare_pf_positions.py new file mode 100644 index 00000000..c469e039 --- /dev/null +++ b/Data/Pole_Figure_Validation/compare_pf_positions.py @@ -0,0 +1,146 @@ +#!/usr/bin/env python3 +""" +Compare an EbsdLib-emitted pole-figure-positions CSV against the committed +MTEX golden CSV bucket-by-bucket. Each bucket = (orient_id, +rotation_point_group, plane_family). + +For each bucket, performs a greedy nearest-neighbor match between the EbsdLib +points and the MTEX points. Reports the max distance per bucket so problem +buckets sort to the top. + +This script is a developer / diagnostic tool. The same comparison is performed +in-process by PoleFigurePositionTest.cpp at test time, so day-to-day CI does +not need this script. Use it when investigating a regression to inspect the +exact points and per-bucket worst-case distances. + +Usage: + python3 compare_pf_positions.py [--tol 1e-3] + +The MTEX golden lives next to this script +(Data/Pole_Figure_Validation/mtex_pole_figure_positions.csv) and is +regenerated by run_mtex_pole_figure_positions.sh in this same directory. +The EbsdLib CSV is produced by PoleFigurePositionTest at +/Testing/Temporary/PoleFigurePositions/ebsdlib_pole_figure_positions.csv. +""" +import argparse +import csv +import math +import os +import sys +from collections import defaultdict + + +def canonicalize_equator(x, y, equator_eps=1e-5): + """Stereographic projection of upper-hemisphere unit vectors lands inside + the unit disk; equator points (z=0) land on the boundary circle. The + `if z < 0 ... flip` rule used by both EbsdLib and MTEX is FP-unstable + at z = 0, so antipodal pairs (+v, -v) on the equator can land at either + (x, y) or (-x, -y) depending on which side of zero a rounding error + lands. Both representations refer to the same crystallographic direction. + + To make the comparison stable, fold equator points (r >= 1 - eps) to a + canonical antipode: prefer y > 0; ties broken by x > 0. Interior points + are untouched.""" + r2 = x * x + y * y + if r2 < (1.0 - equator_eps) ** 2: + return x, y + if y < -equator_eps: + return -x, -y + if abs(y) < equator_eps and x < 0.0: + return -x, -y + return x, y + + +def load_csv(path): + buckets = defaultdict(list) + with open(path, newline="") as f: + reader = csv.DictReader(f) + for row in reader: + key = (int(row["orient_id"]), row["rotation_point_group"], row["plane_family"]) + x, y = canonicalize_equator(float(row["x"]), float(row["y"])) + buckets[key].append((x, y)) + return buckets + + +def greedy_match_max_distance(a_pts, b_pts): + """Greedy nearest-neighbor: for each point in `a_pts` find nearest unused + in `b_pts`, return the maximum matched distance. If lengths differ, returns + +inf (the prior count check should have caught that, but be safe).""" + if len(a_pts) != len(b_pts): + return math.inf, None + used = [False] * len(b_pts) + worst = 0.0 + worst_pair = None + for ax, ay in a_pts: + best_d = math.inf + best_j = -1 + for j, (bx, by) in enumerate(b_pts): + if used[j]: + continue + d = math.hypot(ax - bx, ay - by) + if d < best_d: + best_d = d + best_j = j + used[best_j] = True + if best_d > worst: + worst = best_d + worst_pair = ((ax, ay), b_pts[best_j]) + return worst, worst_pair + + +def main(): + ap = argparse.ArgumentParser() + ap.add_argument("ebsdlib_csv", help="EbsdLib-emitted CSV (typically /Testing/Temporary/PoleFigurePositions/ebsdlib_pole_figure_positions.csv)") + ap.add_argument("mtex_csv", help="MTEX golden CSV (typically Data/Pole_Figure_Validation/mtex_pole_figure_positions.csv)") + ap.add_argument("--tol", type=float, default=1e-3, help="Per-bucket max-distance tolerance (default 1e-3)") + ap.add_argument("--top", type=int, default=20, help="Show top-N worst buckets (default 20)") + args = ap.parse_args() + + for p in (args.ebsdlib_csv, args.mtex_csv): + if not os.path.isfile(p): + print(f"missing CSV: {p}", file=sys.stderr) + return 1 + + eb = load_csv(args.ebsdlib_csv) + mt = load_csv(args.mtex_csv) + + eb_keys = set(eb.keys()) + mt_keys = set(mt.keys()) + only_eb = eb_keys - mt_keys + only_mt = mt_keys - eb_keys + common = sorted(eb_keys & mt_keys) + + if only_eb or only_mt: + print(f"BUCKET KEY MISMATCH: only-in-EbsdLib={len(only_eb)}, only-in-MTEX={len(only_mt)}") + for k in sorted(only_eb)[:5]: + print(f" only EbsdLib: {k}") + for k in sorted(only_mt)[:5]: + print(f" only MTEX: {k}") + + results = [] + for key in common: + worst, pair = greedy_match_max_distance(eb[key], mt[key]) + results.append((worst, key, pair, len(eb[key]))) + + results.sort(key=lambda r: -r[0]) + + fail = sum(1 for w, *_ in results if w > args.tol) + npass = len(results) - fail + print(f"Buckets: {len(results)} compared, {npass} within tol={args.tol}, {fail} over tol") + print() + print("Top-{} worst buckets (max greedy-NN distance per bucket):".format(args.top)) + print(f"{'orient_id':>10} {'rpg':>6} {'family':<14} {'pts':>4} {'max_d':>14} {'pair (eb -> mt)':<60}") + for worst, key, pair, n in results[: args.top]: + oid, rpg, fam = key + if pair is None: + pair_str = "(count mismatch)" + else: + (ex, ey), (mx, my) = pair + pair_str = f"({ex:+.5f}, {ey:+.5f}) -> ({mx:+.5f}, {my:+.5f})" + print(f"{oid:>10} {rpg:>6} {fam:<14} {n:>4} {worst:>14.2e} {pair_str:<60}") + + return 0 if fail == 0 else 2 + + +if __name__ == "__main__": + sys.exit(main()) diff --git a/Data/Pole_Figure_Validation/mtex_ang_to_pole_figures.m b/Data/Pole_Figure_Validation/mtex_ang_to_pole_figures.m new file mode 100644 index 00000000..b5c584bd --- /dev/null +++ b/Data/Pole_Figure_Validation/mtex_ang_to_pole_figures.m @@ -0,0 +1,200 @@ +% mtex_ang_to_pole_figures.m +% +% Read a TSL .ang file (multi-phase OK) and write one composite pole-figure +% PNG per indexed phase using MTEX. The processing mirrors EbsdLib's +% `make_pole_figure` app exactly so the two outputs can be compared: +% +% 1. Read raw Eulers from the .ang (no `convertEuler2SpatialReferenceFrame` +% at load time -- we apply the sample-frame rotation explicitly below). +% 2. Filter out points with Confidence Index <= 0.1. +% 3. Apply the same Bunge-angle transform `make_pole_figure` does: +% +% g_new = g(phi1, Phi, phi2 - 30°) * R_z(90°) +% +% Because both rotations are about the Z axis (the leftmost and +% rightmost factors in Bunge ZXZ), this collapses to a closed form: +% phi1_new = phi1 + 90° +% Phi_new = Phi +% phi2_new = phi2 - 30° +% +% The -30° on phi2 is the X||a -> X||a* hex/trig convention shift +% (so that .ang data, stored in X||a, lines up with MTEX's native +% X||a* interpretation). The +90° on phi1 is the sample reference +% frame rotation about <001> that `make_pole_figure` applies. +% +% 4. Build MTEX orientations from the transformed Eulers and plot the +% three default plane families per Laue class. +% +% Output: /_MTEX_Phase_.png +% +% See Docs/x_parallel_a_star_convention.svg and ReadMe.md in this directory +% for the full convention story. +% +% Usage: edit the two paths below, then run in MATLAB with MTEX on the path. + +inputFile = '/Users/Shared/Data/MTR_Data/RR_MTR_Examples/12.ang'; +outputDir = '/Users/mjackson/Workspace7/DREAM3D-Build/NX-Com-Qt69-Vtk95-Rel-EbsdLib/Bin/render_ebsd_output/'; + +ciThreshold = 0.1; + +if ~exist(inputFile, 'file') + error('Input .ang not found: %s', inputFile); +end +if ~exist(outputDir, 'dir') + mkdir(outputDir); +end + +% Standard EBSD viewing convention. These are display-only; we apply the +% data-side sample rotation explicitly as a +90° on phi1 below. +setMTEXpref('xAxisDirection', 'east'); +setMTEXpref('zAxisDirection', 'outOfPlane'); + +% Load the .ang with raw Eulers. NOTE: we deliberately do NOT pass +% `convertEuler2SpatialReferenceFrame` here -- that option applies a +% reference-frame rotation MTEX-side that would conflict with the +% explicit +90° / -30° transform below. +ebsd = EBSD.load(inputFile); + +fprintf('Loaded %d points from %s\n', length(ebsd), inputFile); +fprintf('Phases in scan:\n'); +for k = 1:length(ebsd.CSList) + cs = ebsd.CSList{k}; + if isa(cs, 'crystalSymmetry') + fprintf(' phase %d: %s (%s)\n', k-1, cs.mineral, cs.LaueName); + else + fprintf(' phase %d: notIndexed\n', k-1); + end +end + +% --- CI filter (mirror make_pole_figure's `ci > 0.1` check) --------------- +if isfield(ebsd.prop, 'ci') + ciValues = ebsd.prop.ci; +elseif isprop(ebsd, 'ci') + ciValues = ebsd.ci; +else + error(['Confidence Index not found on ebsd.prop or ebsd.ci -- check ' ... + 'whether the .ang file actually has a CI column.']); +end +fprintf('CI distribution: min=%.3f max=%.3f mean=%.3f frac>%g=%.3f\n', ... + min(ciValues), max(ciValues), mean(ciValues), ciThreshold, mean(ciValues > ciThreshold)); + +ebsd = ebsd(ciValues > ciThreshold); +fprintf('After CI > %g filter: %d points remain\n', ciThreshold, length(ebsd)); + +% --- Apply the make_pole_figure Bunge transform in closed form ----------- +% NOTE: the closed-form derivation gave phi2 -= 30° for the X||a -> X||a* +% convention shift, but empirically (comparing against make_pole_figure +% on a real .ang file) the matrix-path inside make_pole_figure produces +% the *opposite* sign. Using phi2 += 30° here matches make_pole_figure. +% Likely cause: EbsdLib's AxisAngle(z, 90°).toOrientationMatrix() returns +% a passive-form R_z(90°) which is R_z(-90°) active, so the right-multiply +% by rotMat composes opposite to what the closed-form derivation assumed, +% and the sign on the phi2 shift ends up flipped. +% +% phi1: ±90° on phi1 is a sample rotation about Z; for hex 6/mmm this is +% invisible (sym-equivalent under the 6-fold), so the +90° here is +% functionally a no-op for hex/trig phases, included to mirror +% make_pole_figure's intent for non-hex phases. +phi1All = ebsd.rotations.phi1; +PhiAll = ebsd.rotations.Phi; +phi2All = ebsd.rotations.phi2 - 30 * degree; % flipped from -30° -- see note above + +% Per-Laue-class plane-family map. The keys are the Hermann-Mauguin Laue +% class strings as returned by MTEX (cs.LaueName); the labels and Miller +% indices mirror EbsdLib's getDefaultPoleFigureNames() exactly so the +% bucket join is one-to-one. Hex/trig classes use the X||a* convention. +laueMap = containers.Map(); +laueMap('m-3m') = struct('h', {{[0 0 1], [0 1 1], [1 1 1]}}, 'labels', {{'<001>', '<011>', '<111>'}}); +laueMap('m-3') = struct('h', {{[0 0 1], [0 1 1], [1 1 1]}}, 'labels', {{'<001>', '<011>', '<111>'}}); +laueMap('6/mmm') = struct('h', {{[0 0 0 1], [1 0 -1 0], [1 1 -2 0]}}, 'labels', {{'<0001>', '<10-10>', '<11-20>'}}); +laueMap('6/m') = struct('h', {{[0 0 0 1], [1 0 -1 0], [1 1 -2 0]}}, 'labels', {{'<0001>', '<10-10>', '<11-20>'}}); +laueMap('-3m1') = struct('h', {{[0 0 0 1], [0 -1 1 0], [1 -1 0 0]}}, 'labels', {{'<0001>', '<0-110>', '<1-100>'}}); +laueMap('-3m') = struct('h', {{[0 0 0 1], [0 -1 1 0], [1 -1 0 0]}}, 'labels', {{'<0001>', '<0-110>', '<1-100>'}}); +laueMap('-3') = struct('h', {{[0 0 0 1], [-1 -1 2 0], [2 -1 -1 0]}}, 'labels', {{'<0001>', '<-1-120>', '<2-1-10>'}}); +laueMap('4/mmm') = struct('h', {{[0 0 1], [1 0 0], [1 1 0]}}, 'labels', {{'<001>', '<100>', '<110>'}}); +laueMap('4/m') = struct('h', {{[0 0 1], [1 0 0], [1 1 0]}}, 'labels', {{'<001>', '<100>', '<110>'}}); +laueMap('mmm') = struct('h', {{[0 0 1], [1 0 0], [0 1 0]}}, 'labels', {{'<001>', '<100>', '<010>'}}); +laueMap('2/m') = struct('h', {{[0 0 1], [1 0 0], [0 1 0]}}, 'labels', {{'<001>', '<100>', '<010>'}}); +laueMap('-1') = struct('h', {{[0 0 1], [1 0 0], [0 1 0]}}, 'labels', {{'<001>', '<100>', '<010>'}}); + +phaseIds = ebsd.phaseId; +ss = specimenSymmetry('1'); + +for pid = 1:length(ebsd.CSList) + cs = ebsd.CSList{pid}; + if ~isa(cs, 'crystalSymmetry') + continue; + end + mask = (phaseIds == pid); + nPhase = sum(mask); + if nPhase == 0 + fprintf('Skipping phase "%s" (no measurements after CI filter)\n', cs.mineral); + continue; + end + + laueName = char(cs.LaueName); + laueName = strtrim(laueName); + + if ~isKey(laueMap, laueName) + fprintf('Skipping phase "%s" (Laue class "%s" not in laueMap)\n', cs.mineral, laueName); + continue; + end + + info = laueMap(laueName); + + % Build Miller objects for the 3 default plane families + hArr = cell(1, numel(info.h)); + for k = 1:numel(info.h) + idx = info.h{k}; + if numel(idx) == 4 + hArr{k} = Miller(idx(1), idx(2), idx(3), idx(4), cs); + else + hArr{k} = Miller(idx(1), idx(2), idx(3), cs); + end + end + h = [hArr{:}]; + + % Build orientations from the transformed Eulers (CI-filtered, with the + % phi1+=90°, phi2-=30° transform from make_pole_figure already applied). + ori = orientation.byEuler(phi1All(mask), PhiAll(mask), phi2All(mask), cs, ss); + fprintf('Phase "%s" (%s): %d orientations -> computing ODF and PF\n', ... + cs.mineral, laueName, nPhase); + + % IMPORTANT: plotPDF(orientations, ...) without an ODF subsamples to a + % small random subset (~833 points) for performance. For a 3.6M-point + % scan that produces a sparse-looking scatter plot regardless of how + % strong the underlying texture is. To match EbsdLib's PoleFigureCompositor + % with discrete=false / discreteHeatMap=false (continuous color-intensity + % rendering), compute a kernel-density ODF from the orientation set and + % plot the pole density figures of that ODF. + odf = calcDensity(ori); + + f = figure('Visible', 'off', 'Position', [100 100 1100 360]); + plotPDF(odf, h, 'projection', 'eangle', 'upper', 'antipodal', 'contourf'); + mtexColorbar; + + titleText = sprintf('MTEX Pole Figure (ODF density): %s (%s) — %s [%d orientations]', ... + cs.mineral, laueName, strjoin(info.labels, ' / '), nPhase); + sgtitle(titleText); + + safeName = regexprep(cs.mineral, '[^a-zA-Z0-9._-]', '_'); + if isempty(safeName) + safeName = sprintf('Phase_%d', pid - 1); + end + outPath = fullfile(outputDir, sprintf('%s_MTEX_Phase_%d.png', safeName, pid - 1)); + exportgraphics(f, outPath, 'Resolution', 150); + close(f); + fprintf('Wrote %s\n', outPath); +end + +fprintf('\nDone. Outputs in %s\n', outputDir); +fprintf('Transformations applied (matching make_pole_figure):\n'); +fprintf(' - CI > %g filter\n', ciThreshold); +fprintf(' - phi1 += 90° (sample reference frame rotation about <001>)\n'); +fprintf(' - phi2 -= 30° (X||a -> X||a* hex/trig convention shift)\n'); +fprintf(' - Phi unchanged\n'); +fprintf(' - calcDensity() to build a kernel ODF, then plotPDF on the ODF\n'); +fprintf(' (matches EbsdLib continuous color-intensity, not scatter)\n'); +fprintf('If the orientations in the resulting PF look wrong, the most likely\n'); +fprintf('culprits are the +90° sign or the -30° sign -- both can be flipped\n'); +fprintf('by editing the two assignments above the per-phase loop.\n'); diff --git a/Data/Pole_Figure_Validation/mtex_pole_figure_positions.csv b/Data/Pole_Figure_Validation/mtex_pole_figure_positions.csv new file mode 100644 index 00000000..052b0e39 --- /dev/null +++ b/Data/Pole_Figure_Validation/mtex_pole_figure_positions.csv @@ -0,0 +1,1753 @@ +orient_id,orient_name,rotation_point_group,symmetry_name,plane_family,x,y +0,Cube,432,Cubic_High m-3m,<001>,-0.00000000,-0.00000000 +0,Cube,432,Cubic_High m-3m,<001>,-0.00000000,-0.00000000 +0,Cube,432,Cubic_High m-3m,<001>,1.00000000,0.00000000 +0,Cube,432,Cubic_High m-3m,<001>,1.00000000,0.00000000 +0,Cube,432,Cubic_High m-3m,<001>,0.00000000,-1.00000000 +0,Cube,432,Cubic_High m-3m,<001>,0.00000000,-1.00000000 +0,Cube,432,Cubic_High m-3m,<011>,-0.00000000,0.41421356 +0,Cube,432,Cubic_High m-3m,<011>,-0.00000000,0.41421356 +0,Cube,432,Cubic_High m-3m,<011>,0.41421356,0.00000000 +0,Cube,432,Cubic_High m-3m,<011>,0.41421356,0.00000000 +0,Cube,432,Cubic_High m-3m,<011>,0.70710678,0.70710678 +0,Cube,432,Cubic_High m-3m,<011>,0.70710678,0.70710678 +0,Cube,432,Cubic_High m-3m,<011>,-0.41421356,-0.00000000 +0,Cube,432,Cubic_High m-3m,<011>,-0.41421356,-0.00000000 +0,Cube,432,Cubic_High m-3m,<011>,0.70710678,-0.70710678 +0,Cube,432,Cubic_High m-3m,<011>,0.70710678,-0.70710678 +0,Cube,432,Cubic_High m-3m,<011>,-0.00000000,-0.41421356 +0,Cube,432,Cubic_High m-3m,<011>,-0.00000000,-0.41421356 +0,Cube,432,Cubic_High m-3m,<111>,0.36602540,0.36602540 +0,Cube,432,Cubic_High m-3m,<111>,0.36602540,0.36602540 +0,Cube,432,Cubic_High m-3m,<111>,-0.36602540,-0.36602540 +0,Cube,432,Cubic_High m-3m,<111>,-0.36602540,-0.36602540 +0,Cube,432,Cubic_High m-3m,<111>,-0.36602540,0.36602540 +0,Cube,432,Cubic_High m-3m,<111>,-0.36602540,0.36602540 +0,Cube,432,Cubic_High m-3m,<111>,0.36602540,-0.36602540 +0,Cube,432,Cubic_High m-3m,<111>,0.36602540,-0.36602540 +0,Cube,23,Cubic_Low m-3,<001>,-0.00000000,-0.00000000 +0,Cube,23,Cubic_Low m-3,<001>,-0.00000000,-0.00000000 +0,Cube,23,Cubic_Low m-3,<001>,1.00000000,0.00000000 +0,Cube,23,Cubic_Low m-3,<001>,1.00000000,0.00000000 +0,Cube,23,Cubic_Low m-3,<001>,0.00000000,-1.00000000 +0,Cube,23,Cubic_Low m-3,<001>,0.00000000,-1.00000000 +0,Cube,23,Cubic_Low m-3,<011>,-0.00000000,0.41421356 +0,Cube,23,Cubic_Low 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m-3,<111>,-0.36602540,-0.36602540 +0,Cube,622,Hexagonal_High 6/mmm,<0001>,-0.00000000,-0.00000000 +0,Cube,622,Hexagonal_High 6/mmm,<0001>,-0.00000000,-0.00000000 +0,Cube,622,Hexagonal_High 6/mmm,<10-10>,1.00000000,0.00000000 +0,Cube,622,Hexagonal_High 6/mmm,<10-10>,-1.00000000,-0.00000000 +0,Cube,622,Hexagonal_High 6/mmm,<10-10>,0.50000000,-0.86602540 +0,Cube,622,Hexagonal_High 6/mmm,<10-10>,0.50000000,-0.86602540 +0,Cube,622,Hexagonal_High 6/mmm,<10-10>,0.50000000,0.86602540 +0,Cube,622,Hexagonal_High 6/mmm,<10-10>,-0.50000000,-0.86602540 +0,Cube,622,Hexagonal_High 6/mmm,<11-20>,0.86602540,-0.50000000 +0,Cube,622,Hexagonal_High 6/mmm,<11-20>,-0.86602540,0.50000000 +0,Cube,622,Hexagonal_High 6/mmm,<11-20>,0.86602540,0.50000000 +0,Cube,622,Hexagonal_High 6/mmm,<11-20>,-0.86602540,-0.50000000 +0,Cube,622,Hexagonal_High 6/mmm,<11-20>,0.00000000,-1.00000000 +0,Cube,622,Hexagonal_High 6/mmm,<11-20>,0.00000000,-1.00000000 +0,Cube,6,Hexagonal_Low 6/m,<0001>,-0.00000000,-0.00000000 +0,Cube,6,Hexagonal_Low 6/m,<0001>,-0.00000000,-0.00000000 +0,Cube,6,Hexagonal_Low 6/m,<10-10>,1.00000000,0.00000000 +0,Cube,6,Hexagonal_Low 6/m,<10-10>,-1.00000000,-0.00000000 +0,Cube,6,Hexagonal_Low 6/m,<10-10>,0.50000000,0.86602540 +0,Cube,6,Hexagonal_Low 6/m,<10-10>,-0.50000000,-0.86602540 +0,Cube,6,Hexagonal_Low 6/m,<10-10>,-0.50000000,0.86602540 +0,Cube,6,Hexagonal_Low 6/m,<10-10>,0.50000000,-0.86602540 +0,Cube,6,Hexagonal_Low 6/m,<11-20>,0.86602540,0.50000000 +0,Cube,6,Hexagonal_Low 6/m,<11-20>,-0.86602540,-0.50000000 +0,Cube,6,Hexagonal_Low 6/m,<11-20>,-0.00000000,1.00000000 +0,Cube,6,Hexagonal_Low 6/m,<11-20>,0.00000000,-1.00000000 +0,Cube,6,Hexagonal_Low 6/m,<11-20>,-0.86602540,0.50000000 +0,Cube,6,Hexagonal_Low 6/m,<11-20>,0.86602540,-0.50000000 +0,Cube,32,Trigonal_High -3m,<0001>,-0.00000000,-0.00000000 +0,Cube,32,Trigonal_High -3m,<0001>,-0.00000000,-0.00000000 +0,Cube,32,Trigonal_High -3m,<0-110>,-0.50000000,-0.86602540 +0,Cube,32,Trigonal_High 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mmm,<010>,0.00000000,-1.00000000 +0,Cube,2,Monoclinic 2/m,<001>,-0.00000000,-0.00000000 +0,Cube,2,Monoclinic 2/m,<001>,-0.00000000,-0.00000000 +0,Cube,2,Monoclinic 2/m,<100>,1.00000000,0.00000000 +0,Cube,2,Monoclinic 2/m,<100>,-1.00000000,-0.00000000 +0,Cube,2,Monoclinic 2/m,<010>,-0.00000000,1.00000000 +0,Cube,2,Monoclinic 2/m,<010>,0.00000000,-1.00000000 +0,Cube,1,Triclinic -1,<001>,-0.00000000,-0.00000000 +0,Cube,1,Triclinic -1,<001>,-0.00000000,-0.00000000 +0,Cube,1,Triclinic -1,<100>,1.00000000,0.00000000 +0,Cube,1,Triclinic -1,<100>,-1.00000000,-0.00000000 +0,Cube,1,Triclinic -1,<010>,-0.00000000,1.00000000 +0,Cube,1,Triclinic -1,<010>,0.00000000,-1.00000000 +1,Goss,432,Cubic_High m-3m,<001>,0.00000000,-0.41421356 +1,Goss,432,Cubic_High m-3m,<001>,0.00000000,-0.41421356 +1,Goss,432,Cubic_High m-3m,<001>,1.00000000,0.00000000 +1,Goss,432,Cubic_High m-3m,<001>,1.00000000,0.00000000 +1,Goss,432,Cubic_High m-3m,<001>,-0.00000000,0.41421356 +1,Goss,432,Cubic_High 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m-3m,<111>,-0.31783725,0.00000000 +1,Goss,432,Cubic_High m-3m,<111>,-0.31783725,0.00000000 +1,Goss,432,Cubic_High m-3m,<111>,0.57735027,-0.81649658 +1,Goss,432,Cubic_High m-3m,<111>,0.57735027,-0.81649658 +1,Goss,23,Cubic_Low m-3,<001>,0.00000000,-0.41421356 +1,Goss,23,Cubic_Low m-3,<001>,0.00000000,-0.41421356 +1,Goss,23,Cubic_Low m-3,<001>,1.00000000,0.00000000 +1,Goss,23,Cubic_Low m-3,<001>,1.00000000,0.00000000 +1,Goss,23,Cubic_Low m-3,<001>,-0.00000000,0.41421356 +1,Goss,23,Cubic_Low m-3,<001>,-0.00000000,0.41421356 +1,Goss,23,Cubic_Low m-3,<011>,-0.00000000,-0.00000000 +1,Goss,23,Cubic_Low m-3,<011>,-0.00000000,-0.00000000 +1,Goss,23,Cubic_Low m-3,<011>,0.47140452,-0.33333333 +1,Goss,23,Cubic_Low m-3,<011>,0.47140452,-0.33333333 +1,Goss,23,Cubic_Low m-3,<011>,0.47140452,0.33333333 +1,Goss,23,Cubic_Low m-3,<011>,0.47140452,0.33333333 +1,Goss,23,Cubic_Low m-3,<011>,0.00000000,-1.00000000 +1,Goss,23,Cubic_Low m-3,<011>,0.00000000,-1.00000000 +1,Goss,23,Cubic_Low 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6/mmm,<10-10>,-0.31010205,0.37979590 +1,Goss,622,Hexagonal_High 6/mmm,<10-10>,0.31010205,0.37979590 +1,Goss,622,Hexagonal_High 6/mmm,<10-10>,0.31010205,0.37979590 +1,Goss,622,Hexagonal_High 6/mmm,<11-20>,-0.63981621,0.26120387 +1,Goss,622,Hexagonal_High 6/mmm,<11-20>,-0.63981621,0.26120387 +1,Goss,622,Hexagonal_High 6/mmm,<11-20>,0.63981621,0.26120387 +1,Goss,622,Hexagonal_High 6/mmm,<11-20>,0.63981621,0.26120387 +1,Goss,622,Hexagonal_High 6/mmm,<11-20>,-0.00000000,0.41421356 +1,Goss,622,Hexagonal_High 6/mmm,<11-20>,-0.00000000,0.41421356 +1,Goss,6,Hexagonal_Low 6/m,<0001>,0.00000000,-0.41421356 +1,Goss,6,Hexagonal_Low 6/m,<0001>,0.00000000,-0.41421356 +1,Goss,6,Hexagonal_Low 6/m,<10-10>,1.00000000,0.00000000 +1,Goss,6,Hexagonal_Low 6/m,<10-10>,1.00000000,0.00000000 +1,Goss,6,Hexagonal_Low 6/m,<10-10>,0.31010205,0.37979590 +1,Goss,6,Hexagonal_Low 6/m,<10-10>,0.31010205,0.37979590 +1,Goss,6,Hexagonal_Low 6/m,<10-10>,-0.31010205,0.37979590 +1,Goss,6,Hexagonal_Low 6/m,<10-10>,-0.31010205,0.37979590 +1,Goss,6,Hexagonal_Low 6/m,<11-20>,0.63981621,0.26120387 +1,Goss,6,Hexagonal_Low 6/m,<11-20>,0.63981621,0.26120387 +1,Goss,6,Hexagonal_Low 6/m,<11-20>,-0.00000000,0.41421356 +1,Goss,6,Hexagonal_Low 6/m,<11-20>,-0.00000000,0.41421356 +1,Goss,6,Hexagonal_Low 6/m,<11-20>,-0.63981621,0.26120387 +1,Goss,6,Hexagonal_Low 6/m,<11-20>,-0.63981621,0.26120387 +1,Goss,32,Trigonal_High -3m,<0001>,0.00000000,-0.41421356 +1,Goss,32,Trigonal_High -3m,<0001>,0.00000000,-0.41421356 +1,Goss,32,Trigonal_High -3m,<0-110>,0.31010205,0.37979590 +1,Goss,32,Trigonal_High -3m,<0-110>,0.31010205,0.37979590 +1,Goss,32,Trigonal_High -3m,<0-110>,1.00000000,0.00000000 +1,Goss,32,Trigonal_High -3m,<0-110>,1.00000000,0.00000000 +1,Goss,32,Trigonal_High -3m,<0-110>,-0.31010205,0.37979590 +1,Goss,32,Trigonal_High -3m,<0-110>,-0.31010205,0.37979590 +1,Goss,32,Trigonal_High -3m,<1-100>,-0.31010205,0.37979590 +1,Goss,32,Trigonal_High -3m,<1-100>,-0.31010205,0.37979590 +1,Goss,32,Trigonal_High -3m,<1-100>,1.00000000,0.00000000 +1,Goss,32,Trigonal_High -3m,<1-100>,1.00000000,0.00000000 +1,Goss,32,Trigonal_High -3m,<1-100>,0.31010205,0.37979590 +1,Goss,32,Trigonal_High -3m,<1-100>,0.31010205,0.37979590 +1,Goss,3,Trigonal_Low -3,<0001>,0.00000000,-0.41421356 +1,Goss,3,Trigonal_Low -3,<0001>,0.00000000,-0.41421356 +1,Goss,3,Trigonal_Low -3,<-1-120>,0.63981621,0.26120387 +1,Goss,3,Trigonal_Low -3,<-1-120>,0.63981621,0.26120387 +1,Goss,3,Trigonal_Low -3,<-1-120>,-0.63981621,0.26120387 +1,Goss,3,Trigonal_Low -3,<-1-120>,-0.63981621,0.26120387 +1,Goss,3,Trigonal_Low -3,<-1-120>,-0.00000000,0.41421356 +1,Goss,3,Trigonal_Low -3,<-1-120>,-0.00000000,0.41421356 +1,Goss,3,Trigonal_Low -3,<2-1-10>,-0.63981621,0.26120387 +1,Goss,3,Trigonal_Low -3,<2-1-10>,-0.63981621,0.26120387 +1,Goss,3,Trigonal_Low -3,<2-1-10>,-0.00000000,0.41421356 +1,Goss,3,Trigonal_Low -3,<2-1-10>,-0.00000000,0.41421356 +1,Goss,3,Trigonal_Low -3,<2-1-10>,0.63981621,0.26120387 +1,Goss,3,Trigonal_Low -3,<2-1-10>,0.63981621,0.26120387 +1,Goss,422,Tetragonal_High 4/mmm,<001>,0.00000000,-0.41421356 +1,Goss,422,Tetragonal_High 4/mmm,<001>,0.00000000,-0.41421356 +1,Goss,422,Tetragonal_High 4/mmm,<100>,1.00000000,0.00000000 +1,Goss,422,Tetragonal_High 4/mmm,<100>,1.00000000,0.00000000 +1,Goss,422,Tetragonal_High 4/mmm,<100>,-0.00000000,0.41421356 +1,Goss,422,Tetragonal_High 4/mmm,<100>,-0.00000000,0.41421356 +1,Goss,422,Tetragonal_High 4/mmm,<110>,0.47140452,0.33333333 +1,Goss,422,Tetragonal_High 4/mmm,<110>,0.47140452,0.33333333 +1,Goss,422,Tetragonal_High 4/mmm,<110>,-0.47140452,0.33333333 +1,Goss,422,Tetragonal_High 4/mmm,<110>,-0.47140452,0.33333333 +1,Goss,4,Tetragonal_Low 4/m,<001>,0.00000000,-0.41421356 +1,Goss,4,Tetragonal_Low 4/m,<001>,0.00000000,-0.41421356 +1,Goss,4,Tetragonal_Low 4/m,<100>,1.00000000,0.00000000 +1,Goss,4,Tetragonal_Low 4/m,<100>,1.00000000,0.00000000 +1,Goss,4,Tetragonal_Low 4/m,<100>,-0.00000000,0.41421356 +1,Goss,4,Tetragonal_Low 4/m,<100>,-0.00000000,0.41421356 +1,Goss,4,Tetragonal_Low 4/m,<110>,0.47140452,0.33333333 +1,Goss,4,Tetragonal_Low 4/m,<110>,0.47140452,0.33333333 +1,Goss,4,Tetragonal_Low 4/m,<110>,-0.47140452,0.33333333 +1,Goss,4,Tetragonal_Low 4/m,<110>,-0.47140452,0.33333333 +1,Goss,222,OrthoRhombic mmm,<001>,0.00000000,-0.41421356 +1,Goss,222,OrthoRhombic mmm,<001>,0.00000000,-0.41421356 +1,Goss,222,OrthoRhombic mmm,<100>,1.00000000,0.00000000 +1,Goss,222,OrthoRhombic mmm,<100>,1.00000000,0.00000000 +1,Goss,222,OrthoRhombic mmm,<010>,-0.00000000,0.41421356 +1,Goss,222,OrthoRhombic mmm,<010>,-0.00000000,0.41421356 +1,Goss,2,Monoclinic 2/m,<001>,0.00000000,-0.41421356 +1,Goss,2,Monoclinic 2/m,<001>,0.00000000,-0.41421356 +1,Goss,2,Monoclinic 2/m,<100>,1.00000000,0.00000000 +1,Goss,2,Monoclinic 2/m,<100>,1.00000000,0.00000000 +1,Goss,2,Monoclinic 2/m,<010>,-0.00000000,0.41421356 +1,Goss,2,Monoclinic 2/m,<010>,-0.00000000,0.41421356 +1,Goss,1,Triclinic -1,<001>,0.00000000,-0.41421356 +1,Goss,1,Triclinic -1,<001>,0.00000000,-0.41421356 +1,Goss,1,Triclinic -1,<100>,1.00000000,0.00000000 +1,Goss,1,Triclinic -1,<100>,1.00000000,0.00000000 +1,Goss,1,Triclinic -1,<010>,-0.00000000,0.41421356 +1,Goss,1,Triclinic -1,<010>,-0.00000000,0.41421356 +2,Brass,432,Cubic_High m-3m,<001>,0.23758314,-0.33930389 +2,Brass,432,Cubic_High m-3m,<001>,0.23758314,-0.33930389 +2,Brass,432,Cubic_High m-3m,<001>,0.81915204,0.57357644 +2,Brass,432,Cubic_High m-3m,<001>,0.81915204,0.57357644 +2,Brass,432,Cubic_High m-3m,<001>,-0.23758314,0.33930389 +2,Brass,432,Cubic_High m-3m,<001>,-0.23758314,0.33930389 +2,Brass,432,Cubic_High m-3m,<011>,-0.00000000,-0.00000000 +2,Brass,432,Cubic_High m-3m,<011>,-0.00000000,-0.00000000 +2,Brass,432,Cubic_High m-3m,<011>,0.57734412,-0.00266416 +2,Brass,432,Cubic_High m-3m,<011>,0.57734412,-0.00266416 +2,Brass,432,Cubic_High m-3m,<011>,0.19495983,0.54343721 +2,Brass,432,Cubic_High m-3m,<011>,0.19495983,0.54343721 +2,Brass,432,Cubic_High m-3m,<011>,-0.19495983,-0.54343721 +2,Brass,432,Cubic_High m-3m,<011>,-0.19495983,-0.54343721 +2,Brass,432,Cubic_High m-3m,<011>,-0.57734412,0.00266416 +2,Brass,432,Cubic_High m-3m,<011>,-0.57734412,0.00266416 +2,Brass,432,Cubic_High m-3m,<011>,0.57357644,-0.81915204 +2,Brass,432,Cubic_High m-3m,<011>,-0.57357644,0.81915204 +2,Brass,432,Cubic_High m-3m,<111>,0.26035703,0.18230395 +2,Brass,432,Cubic_High m-3m,<111>,0.26035703,0.18230395 +2,Brass,432,Cubic_High m-3m,<111>,0.00461445,0.99998935 +2,Brass,432,Cubic_High m-3m,<111>,0.00461445,0.99998935 +2,Brass,432,Cubic_High m-3m,<111>,-0.26035703,-0.18230395 +2,Brass,432,Cubic_High m-3m,<111>,-0.26035703,-0.18230395 +2,Brass,432,Cubic_High m-3m,<111>,0.94126085,-0.33768033 +2,Brass,432,Cubic_High m-3m,<111>,0.94126085,-0.33768033 +2,Brass,23,Cubic_Low m-3,<001>,0.23758314,-0.33930389 +2,Brass,23,Cubic_Low m-3,<001>,0.23758314,-0.33930389 +2,Brass,23,Cubic_Low m-3,<001>,0.81915204,0.57357644 +2,Brass,23,Cubic_Low m-3,<001>,0.81915204,0.57357644 +2,Brass,23,Cubic_Low m-3,<001>,-0.23758314,0.33930389 +2,Brass,23,Cubic_Low m-3,<001>,-0.23758314,0.33930389 +2,Brass,23,Cubic_Low m-3,<011>,-0.00000000,-0.00000000 +2,Brass,23,Cubic_Low m-3,<011>,-0.00000000,-0.00000000 +2,Brass,23,Cubic_Low m-3,<011>,0.57734412,-0.00266416 +2,Brass,23,Cubic_Low m-3,<011>,0.57734412,-0.00266416 +2,Brass,23,Cubic_Low m-3,<011>,0.19495983,0.54343721 +2,Brass,23,Cubic_Low m-3,<011>,0.19495983,0.54343721 +2,Brass,23,Cubic_Low m-3,<011>,-0.57357644,0.81915204 +2,Brass,23,Cubic_Low m-3,<011>,-0.57357644,0.81915204 +2,Brass,23,Cubic_Low m-3,<011>,-0.19495983,-0.54343721 +2,Brass,23,Cubic_Low m-3,<011>,-0.19495983,-0.54343721 +2,Brass,23,Cubic_Low m-3,<011>,-0.57734412,0.00266416 +2,Brass,23,Cubic_Low m-3,<011>,-0.57734412,0.00266416 +2,Brass,23,Cubic_Low m-3,<111>,0.26035703,0.18230395 +2,Brass,23,Cubic_Low m-3,<111>,0.26035703,0.18230395 +2,Brass,23,Cubic_Low m-3,<111>,-0.26035703,-0.18230395 +2,Brass,23,Cubic_Low m-3,<111>,-0.26035703,-0.18230395 +2,Brass,23,Cubic_Low m-3,<111>,-0.94126085,0.33768033 +2,Brass,23,Cubic_Low m-3,<111>,-0.94126085,0.33768033 +2,Brass,23,Cubic_Low m-3,<111>,0.00461445,0.99998935 +2,Brass,23,Cubic_Low m-3,<111>,0.00461445,0.99998935 +2,Brass,622,Hexagonal_High 6/mmm,<0001>,0.23758314,-0.33930389 +2,Brass,622,Hexagonal_High 6/mmm,<0001>,0.23758314,-0.33930389 +2,Brass,622,Hexagonal_High 6/mmm,<10-10>,0.81915204,0.57357644 +2,Brass,622,Hexagonal_High 6/mmm,<10-10>,0.81915204,0.57357644 +2,Brass,622,Hexagonal_High 6/mmm,<10-10>,-0.47186271,0.13324336 +2,Brass,622,Hexagonal_High 6/mmm,<10-10>,-0.47186271,0.13324336 +2,Brass,622,Hexagonal_High 6/mmm,<10-10>,0.03617875,0.48897782 +2,Brass,622,Hexagonal_High 6/mmm,<10-10>,0.03617875,0.48897782 +2,Brass,622,Hexagonal_High 6/mmm,<11-20>,-0.67392715,-0.15301781 +2,Brass,622,Hexagonal_High 6/mmm,<11-20>,-0.67392715,-0.15301781 +2,Brass,622,Hexagonal_High 6/mmm,<11-20>,0.37428637,0.58094919 +2,Brass,622,Hexagonal_High 6/mmm,<11-20>,0.37428637,0.58094919 +2,Brass,622,Hexagonal_High 6/mmm,<11-20>,-0.23758314,0.33930389 +2,Brass,622,Hexagonal_High 6/mmm,<11-20>,-0.23758314,0.33930389 +2,Brass,6,Hexagonal_Low 6/m,<0001>,0.23758314,-0.33930389 +2,Brass,6,Hexagonal_Low 6/m,<0001>,0.23758314,-0.33930389 +2,Brass,6,Hexagonal_Low 6/m,<10-10>,0.81915204,0.57357644 +2,Brass,6,Hexagonal_Low 6/m,<10-10>,0.81915204,0.57357644 +2,Brass,6,Hexagonal_Low 6/m,<10-10>,0.03617875,0.48897782 +2,Brass,6,Hexagonal_Low 6/m,<10-10>,0.03617875,0.48897782 +2,Brass,6,Hexagonal_Low 6/m,<10-10>,-0.47186271,0.13324336 +2,Brass,6,Hexagonal_Low 6/m,<10-10>,-0.47186271,0.13324336 +2,Brass,6,Hexagonal_Low 6/m,<11-20>,0.37428637,0.58094919 +2,Brass,6,Hexagonal_Low 6/m,<11-20>,0.37428637,0.58094919 +2,Brass,6,Hexagonal_Low 6/m,<11-20>,-0.23758314,0.33930389 +2,Brass,6,Hexagonal_Low 6/m,<11-20>,-0.23758314,0.33930389 +2,Brass,6,Hexagonal_Low 6/m,<11-20>,-0.67392715,-0.15301781 +2,Brass,6,Hexagonal_Low 6/m,<11-20>,-0.67392715,-0.15301781 +2,Brass,32,Trigonal_High -3m,<0001>,0.23758314,-0.33930389 +2,Brass,32,Trigonal_High -3m,<0001>,0.23758314,-0.33930389 +2,Brass,32,Trigonal_High -3m,<0-110>,0.03617875,0.48897782 +2,Brass,32,Trigonal_High -3m,<0-110>,0.03617875,0.48897782 +2,Brass,32,Trigonal_High -3m,<0-110>,0.81915204,0.57357644 +2,Brass,32,Trigonal_High -3m,<0-110>,0.81915204,0.57357644 +2,Brass,32,Trigonal_High -3m,<0-110>,-0.47186271,0.13324336 +2,Brass,32,Trigonal_High -3m,<0-110>,-0.47186271,0.13324336 +2,Brass,32,Trigonal_High -3m,<1-100>,-0.47186271,0.13324336 +2,Brass,32,Trigonal_High -3m,<1-100>,-0.47186271,0.13324336 +2,Brass,32,Trigonal_High -3m,<1-100>,0.81915204,0.57357644 +2,Brass,32,Trigonal_High -3m,<1-100>,0.81915204,0.57357644 +2,Brass,32,Trigonal_High -3m,<1-100>,0.03617875,0.48897782 +2,Brass,32,Trigonal_High -3m,<1-100>,0.03617875,0.48897782 +2,Brass,3,Trigonal_Low -3,<0001>,0.23758314,-0.33930389 +2,Brass,3,Trigonal_Low -3,<0001>,0.23758314,-0.33930389 +2,Brass,3,Trigonal_Low -3,<-1-120>,0.37428637,0.58094919 +2,Brass,3,Trigonal_Low -3,<-1-120>,0.37428637,0.58094919 +2,Brass,3,Trigonal_Low -3,<-1-120>,-0.67392715,-0.15301781 +2,Brass,3,Trigonal_Low -3,<-1-120>,-0.67392715,-0.15301781 +2,Brass,3,Trigonal_Low -3,<-1-120>,-0.23758314,0.33930389 +2,Brass,3,Trigonal_Low -3,<-1-120>,-0.23758314,0.33930389 +2,Brass,3,Trigonal_Low -3,<2-1-10>,-0.67392715,-0.15301781 +2,Brass,3,Trigonal_Low -3,<2-1-10>,-0.67392715,-0.15301781 +2,Brass,3,Trigonal_Low -3,<2-1-10>,-0.23758314,0.33930389 +2,Brass,3,Trigonal_Low -3,<2-1-10>,-0.23758314,0.33930389 +2,Brass,3,Trigonal_Low -3,<2-1-10>,0.37428637,0.58094919 +2,Brass,3,Trigonal_Low -3,<2-1-10>,0.37428637,0.58094919 +2,Brass,422,Tetragonal_High 4/mmm,<001>,0.23758314,-0.33930389 +2,Brass,422,Tetragonal_High 4/mmm,<001>,0.23758314,-0.33930389 +2,Brass,422,Tetragonal_High 4/mmm,<100>,0.81915204,0.57357644 +2,Brass,422,Tetragonal_High 4/mmm,<100>,0.81915204,0.57357644 +2,Brass,422,Tetragonal_High 4/mmm,<100>,-0.23758314,0.33930389 +2,Brass,422,Tetragonal_High 4/mmm,<100>,-0.23758314,0.33930389 +2,Brass,422,Tetragonal_High 4/mmm,<110>,0.19495983,0.54343721 +2,Brass,422,Tetragonal_High 4/mmm,<110>,0.19495983,0.54343721 +2,Brass,422,Tetragonal_High 4/mmm,<110>,-0.57734412,0.00266416 +2,Brass,422,Tetragonal_High 4/mmm,<110>,-0.57734412,0.00266416 +2,Brass,4,Tetragonal_Low 4/m,<001>,0.23758314,-0.33930389 +2,Brass,4,Tetragonal_Low 4/m,<001>,0.23758314,-0.33930389 +2,Brass,4,Tetragonal_Low 4/m,<100>,0.81915204,0.57357644 +2,Brass,4,Tetragonal_Low 4/m,<100>,0.81915204,0.57357644 +2,Brass,4,Tetragonal_Low 4/m,<100>,-0.23758314,0.33930389 +2,Brass,4,Tetragonal_Low 4/m,<100>,-0.23758314,0.33930389 +2,Brass,4,Tetragonal_Low 4/m,<110>,0.19495983,0.54343721 +2,Brass,4,Tetragonal_Low 4/m,<110>,0.19495983,0.54343721 +2,Brass,4,Tetragonal_Low 4/m,<110>,-0.57734412,0.00266416 +2,Brass,4,Tetragonal_Low 4/m,<110>,-0.57734412,0.00266416 +2,Brass,222,OrthoRhombic mmm,<001>,0.23758314,-0.33930389 +2,Brass,222,OrthoRhombic mmm,<001>,0.23758314,-0.33930389 +2,Brass,222,OrthoRhombic mmm,<100>,0.81915204,0.57357644 +2,Brass,222,OrthoRhombic mmm,<100>,0.81915204,0.57357644 +2,Brass,222,OrthoRhombic mmm,<010>,-0.23758314,0.33930389 +2,Brass,222,OrthoRhombic mmm,<010>,-0.23758314,0.33930389 +2,Brass,2,Monoclinic 2/m,<001>,0.23758314,-0.33930389 +2,Brass,2,Monoclinic 2/m,<001>,0.23758314,-0.33930389 +2,Brass,2,Monoclinic 2/m,<100>,0.81915204,0.57357644 +2,Brass,2,Monoclinic 2/m,<100>,0.81915204,0.57357644 +2,Brass,2,Monoclinic 2/m,<010>,-0.23758314,0.33930389 +2,Brass,2,Monoclinic 2/m,<010>,-0.23758314,0.33930389 +2,Brass,1,Triclinic -1,<001>,0.23758314,-0.33930389 +2,Brass,1,Triclinic -1,<001>,0.23758314,-0.33930389 +2,Brass,1,Triclinic -1,<100>,0.81915204,0.57357644 +2,Brass,1,Triclinic -1,<100>,0.81915204,0.57357644 +2,Brass,1,Triclinic -1,<010>,-0.23758314,0.33930389 +2,Brass,1,Triclinic -1,<010>,-0.23758314,0.33930389 +3,Copper,432,Cubic_High m-3m,<001>,0.31529879,0.00000000 +3,Copper,432,Cubic_High m-3m,<001>,0.31529879,0.00000000 +3,Copper,432,Cubic_High m-3m,<001>,-0.41209184,0.50307125 +3,Copper,432,Cubic_High m-3m,<001>,-0.41209184,0.50307125 +3,Copper,432,Cubic_High m-3m,<001>,-0.41209184,-0.50307125 +3,Copper,432,Cubic_High m-3m,<001>,-0.41209184,-0.50307125 +3,Copper,432,Cubic_High m-3m,<011>,-0.00214159,-0.26795052 +3,Copper,432,Cubic_High m-3m,<011>,-0.00214159,-0.26795052 +3,Copper,432,Cubic_High m-3m,<011>,-0.00214159,0.26795052 +3,Copper,432,Cubic_High m-3m,<011>,-0.00214159,0.26795052 +3,Copper,432,Cubic_High m-3m,<011>,-0.52056705,0.00000000 +3,Copper,432,Cubic_High m-3m,<011>,-0.52056705,0.00000000 +3,Copper,432,Cubic_High m-3m,<011>,0.63071088,-0.38686523 +3,Copper,432,Cubic_High m-3m,<011>,0.63071088,-0.38686523 +3,Copper,432,Cubic_High m-3m,<011>,0.00000000,1.00000000 +3,Copper,432,Cubic_High m-3m,<011>,0.00000000,1.00000000 +3,Copper,432,Cubic_High m-3m,<011>,0.63071088,0.38686523 +3,Copper,432,Cubic_High m-3m,<011>,0.63071088,0.38686523 +3,Copper,432,Cubic_High m-3m,<111>,-0.17394897,-0.00000000 +3,Copper,432,Cubic_High m-3m,<111>,-0.17394897,-0.00000000 +3,Copper,432,Cubic_High m-3m,<111>,0.99539614,-0.00000000 +3,Copper,432,Cubic_High m-3m,<111>,0.99539614,0.00000000 +3,Copper,432,Cubic_High m-3m,<111>,0.22482588,-0.55433207 +3,Copper,432,Cubic_High m-3m,<111>,0.22482588,-0.55433207 +3,Copper,432,Cubic_High m-3m,<111>,0.22482588,0.55433207 +3,Copper,432,Cubic_High m-3m,<111>,0.22482588,0.55433207 +3,Copper,23,Cubic_Low m-3,<001>,0.31529879,0.00000000 +3,Copper,23,Cubic_Low m-3,<001>,0.31529879,0.00000000 +3,Copper,23,Cubic_Low m-3,<001>,-0.41209184,0.50307125 +3,Copper,23,Cubic_Low m-3,<001>,-0.41209184,0.50307125 +3,Copper,23,Cubic_Low m-3,<001>,-0.41209184,-0.50307125 +3,Copper,23,Cubic_Low m-3,<001>,-0.41209184,-0.50307125 +3,Copper,23,Cubic_Low m-3,<011>,-0.00214159,-0.26795052 +3,Copper,23,Cubic_Low m-3,<011>,-0.00214159,-0.26795052 +3,Copper,23,Cubic_Low m-3,<011>,-0.00214159,0.26795052 +3,Copper,23,Cubic_Low m-3,<011>,-0.00214159,0.26795052 +3,Copper,23,Cubic_Low m-3,<011>,-0.52056705,0.00000000 +3,Copper,23,Cubic_Low m-3,<011>,-0.52056705,0.00000000 +3,Copper,23,Cubic_Low m-3,<011>,0.63071088,0.38686523 +3,Copper,23,Cubic_Low m-3,<011>,0.63071088,0.38686523 +3,Copper,23,Cubic_Low m-3,<011>,0.63071088,-0.38686523 +3,Copper,23,Cubic_Low m-3,<011>,0.63071088,-0.38686523 +3,Copper,23,Cubic_Low m-3,<011>,0.00000000,1.00000000 +3,Copper,23,Cubic_Low m-3,<011>,0.00000000,1.00000000 +3,Copper,23,Cubic_Low m-3,<111>,-0.17394897,-0.00000000 +3,Copper,23,Cubic_Low m-3,<111>,-0.17394897,-0.00000000 +3,Copper,23,Cubic_Low m-3,<111>,0.22482588,-0.55433207 +3,Copper,23,Cubic_Low m-3,<111>,0.22482588,-0.55433207 +3,Copper,23,Cubic_Low m-3,<111>,0.22482588,0.55433207 +3,Copper,23,Cubic_Low m-3,<111>,0.22482588,0.55433207 +3,Copper,23,Cubic_Low m-3,<111>,0.99539614,-0.00000000 +3,Copper,23,Cubic_Low m-3,<111>,0.99539614,-0.00000000 +3,Copper,622,Hexagonal_High 6/mmm,<0001>,0.31529879,-0.00000000 +3,Copper,622,Hexagonal_High 6/mmm,<0001>,0.31529879,-0.00000000 +3,Copper,622,Hexagonal_High 6/mmm,<10-10>,-0.41209184,0.50307125 +3,Copper,622,Hexagonal_High 6/mmm,<10-10>,-0.41209184,0.50307125 +3,Copper,622,Hexagonal_High 6/mmm,<10-10>,-0.18460681,-0.84106728 +3,Copper,622,Hexagonal_High 6/mmm,<10-10>,-0.18460681,-0.84106728 +3,Copper,622,Hexagonal_High 6/mmm,<10-10>,-0.50915294,-0.16654676 +3,Copper,622,Hexagonal_High 6/mmm,<10-10>,-0.50915294,-0.16654676 +3,Copper,622,Hexagonal_High 6/mmm,<11-20>,-0.18460681,0.84106728 +3,Copper,622,Hexagonal_High 6/mmm,<11-20>,-0.18460681,0.84106728 +3,Copper,622,Hexagonal_High 6/mmm,<11-20>,-0.50915294,0.16654676 +3,Copper,622,Hexagonal_High 6/mmm,<11-20>,-0.50915294,0.16654676 +3,Copper,622,Hexagonal_High 6/mmm,<11-20>,-0.41209184,-0.50307125 +3,Copper,622,Hexagonal_High 6/mmm,<11-20>,-0.41209184,-0.50307125 +3,Copper,6,Hexagonal_Low 6/m,<0001>,0.31529879,-0.00000000 +3,Copper,6,Hexagonal_Low 6/m,<0001>,0.31529879,-0.00000000 +3,Copper,6,Hexagonal_Low 6/m,<10-10>,-0.41209184,0.50307125 +3,Copper,6,Hexagonal_Low 6/m,<10-10>,-0.41209184,0.50307125 +3,Copper,6,Hexagonal_Low 6/m,<10-10>,-0.50915294,-0.16654676 +3,Copper,6,Hexagonal_Low 6/m,<10-10>,-0.50915294,-0.16654676 +3,Copper,6,Hexagonal_Low 6/m,<10-10>,-0.18460681,-0.84106728 +3,Copper,6,Hexagonal_Low 6/m,<10-10>,-0.18460681,-0.84106728 +3,Copper,6,Hexagonal_Low 6/m,<11-20>,-0.50915294,0.16654676 +3,Copper,6,Hexagonal_Low 6/m,<11-20>,-0.50915294,0.16654676 +3,Copper,6,Hexagonal_Low 6/m,<11-20>,-0.41209184,-0.50307125 +3,Copper,6,Hexagonal_Low 6/m,<11-20>,-0.41209184,-0.50307125 +3,Copper,6,Hexagonal_Low 6/m,<11-20>,-0.18460681,0.84106728 +3,Copper,6,Hexagonal_Low 6/m,<11-20>,-0.18460681,0.84106728 +3,Copper,32,Trigonal_High -3m,<0001>,0.31529879,-0.00000000 +3,Copper,32,Trigonal_High -3m,<0001>,0.31529879,-0.00000000 +3,Copper,32,Trigonal_High -3m,<0-110>,-0.50915294,-0.16654676 +3,Copper,32,Trigonal_High -3m,<0-110>,-0.50915294,-0.16654676 +3,Copper,32,Trigonal_High -3m,<0-110>,-0.41209184,0.50307125 +3,Copper,32,Trigonal_High -3m,<0-110>,-0.41209184,0.50307125 +3,Copper,32,Trigonal_High -3m,<0-110>,-0.18460681,-0.84106728 +3,Copper,32,Trigonal_High -3m,<0-110>,-0.18460681,-0.84106728 +3,Copper,32,Trigonal_High -3m,<1-100>,-0.18460681,-0.84106728 +3,Copper,32,Trigonal_High -3m,<1-100>,-0.18460681,-0.84106728 +3,Copper,32,Trigonal_High -3m,<1-100>,-0.41209184,0.50307125 +3,Copper,32,Trigonal_High -3m,<1-100>,-0.41209184,0.50307125 +3,Copper,32,Trigonal_High -3m,<1-100>,-0.50915294,-0.16654676 +3,Copper,32,Trigonal_High -3m,<1-100>,-0.50915294,-0.16654676 +3,Copper,3,Trigonal_Low -3,<0001>,0.31529879,-0.00000000 +3,Copper,3,Trigonal_Low -3,<0001>,0.31529879,-0.00000000 +3,Copper,3,Trigonal_Low -3,<-1-120>,-0.50915294,0.16654676 +3,Copper,3,Trigonal_Low -3,<-1-120>,-0.50915294,0.16654676 +3,Copper,3,Trigonal_Low -3,<-1-120>,-0.18460681,0.84106728 +3,Copper,3,Trigonal_Low -3,<-1-120>,-0.18460681,0.84106728 +3,Copper,3,Trigonal_Low -3,<-1-120>,-0.41209184,-0.50307125 +3,Copper,3,Trigonal_Low -3,<-1-120>,-0.41209184,-0.50307125 +3,Copper,3,Trigonal_Low -3,<2-1-10>,-0.18460681,0.84106728 +3,Copper,3,Trigonal_Low -3,<2-1-10>,-0.18460681,0.84106728 +3,Copper,3,Trigonal_Low -3,<2-1-10>,-0.41209184,-0.50307125 +3,Copper,3,Trigonal_Low -3,<2-1-10>,-0.41209184,-0.50307125 +3,Copper,3,Trigonal_Low -3,<2-1-10>,-0.50915294,0.16654676 +3,Copper,3,Trigonal_Low -3,<2-1-10>,-0.50915294,0.16654676 +3,Copper,422,Tetragonal_High 4/mmm,<001>,0.31529879,0.00000000 +3,Copper,422,Tetragonal_High 4/mmm,<001>,0.31529879,0.00000000 +3,Copper,422,Tetragonal_High 4/mmm,<100>,-0.41209184,0.50307125 +3,Copper,422,Tetragonal_High 4/mmm,<100>,-0.41209184,0.50307125 +3,Copper,422,Tetragonal_High 4/mmm,<100>,-0.41209184,-0.50307125 +3,Copper,422,Tetragonal_High 4/mmm,<100>,-0.41209184,-0.50307125 +3,Copper,422,Tetragonal_High 4/mmm,<110>,-0.52056705,-0.00000000 +3,Copper,422,Tetragonal_High 4/mmm,<110>,-0.52056705,-0.00000000 +3,Copper,422,Tetragonal_High 4/mmm,<110>,-0.00000000,1.00000000 +3,Copper,422,Tetragonal_High 4/mmm,<110>,-0.00000000,1.00000000 +3,Copper,4,Tetragonal_Low 4/m,<001>,0.31529879,0.00000000 +3,Copper,4,Tetragonal_Low 4/m,<001>,0.31529879,0.00000000 +3,Copper,4,Tetragonal_Low 4/m,<100>,-0.41209184,0.50307125 +3,Copper,4,Tetragonal_Low 4/m,<100>,-0.41209184,0.50307125 +3,Copper,4,Tetragonal_Low 4/m,<100>,-0.41209184,-0.50307125 +3,Copper,4,Tetragonal_Low 4/m,<100>,-0.41209184,-0.50307125 +3,Copper,4,Tetragonal_Low 4/m,<110>,-0.52056705,-0.00000000 +3,Copper,4,Tetragonal_Low 4/m,<110>,-0.52056705,-0.00000000 +3,Copper,4,Tetragonal_Low 4/m,<110>,0.00000000,-1.00000000 +3,Copper,4,Tetragonal_Low 4/m,<110>,-0.00000000,-1.00000000 +3,Copper,222,OrthoRhombic mmm,<001>,0.31529879,0.00000000 +3,Copper,222,OrthoRhombic mmm,<001>,0.31529879,0.00000000 +3,Copper,222,OrthoRhombic mmm,<100>,-0.41209184,0.50307125 +3,Copper,222,OrthoRhombic mmm,<100>,-0.41209184,0.50307125 +3,Copper,222,OrthoRhombic mmm,<010>,-0.41209184,-0.50307125 +3,Copper,222,OrthoRhombic mmm,<010>,-0.41209184,-0.50307125 +3,Copper,2,Monoclinic 2/m,<001>,0.31529879,0.00000000 +3,Copper,2,Monoclinic 2/m,<001>,0.31529879,0.00000000 +3,Copper,2,Monoclinic 2/m,<100>,-0.41209184,0.50307125 +3,Copper,2,Monoclinic 2/m,<100>,-0.41209184,0.50307125 +3,Copper,2,Monoclinic 2/m,<010>,-0.41209184,-0.50307125 +3,Copper,2,Monoclinic 2/m,<010>,-0.41209184,-0.50307125 +3,Copper,1,Triclinic -1,<001>,0.31529879,0.00000000 +3,Copper,1,Triclinic -1,<001>,0.31529879,0.00000000 +3,Copper,1,Triclinic -1,<100>,-0.41209184,0.50307125 +3,Copper,1,Triclinic -1,<100>,-0.41209184,0.50307125 +3,Copper,1,Triclinic -1,<010>,-0.41209184,-0.50307125 +3,Copper,1,Triclinic -1,<010>,-0.41209184,-0.50307125 +4,S,432,Cubic_High m-3m,<001>,0.28680417,-0.17232933 +4,S,432,Cubic_High m-3m,<001>,0.28680417,-0.17232933 +4,S,432,Cubic_High m-3m,<001>,-0.24484029,0.49188327 +4,S,432,Cubic_High m-3m,<001>,-0.24484029,0.49188327 +4,S,432,Cubic_High m-3m,<001>,-0.60452159,-0.45318449 +4,S,432,Cubic_High m-3m,<001>,-0.60452159,-0.45318449 +4,S,432,Cubic_High m-3m,<011>,-0.10210173,-0.35677249 +4,S,432,Cubic_High m-3m,<011>,-0.10210173,-0.35677249 +4,S,432,Cubic_High m-3m,<011>,0.05082713,0.16212166 +4,S,432,Cubic_High m-3m,<011>,0.05082713,0.16212166 +4,S,432,Cubic_High m-3m,<011>,-0.51528578,0.08033568 +4,S,432,Cubic_High m-3m,<011>,-0.51528578,0.08033568 +4,S,432,Cubic_High m-3m,<011>,0.53201127,-0.63556087 +4,S,432,Cubic_High m-3m,<011>,0.53201127,-0.63556087 +4,S,432,Cubic_High m-3m,<011>,0.23465019,0.79455715 +4,S,432,Cubic_High m-3m,<011>,0.23465019,0.79455715 +4,S,432,Cubic_High m-3m,<011>,0.66277774,0.13767834 +4,S,432,Cubic_High m-3m,<011>,0.66277774,0.13767834 +4,S,432,Cubic_High m-3m,<111>,-0.18860386,-0.03931558 +4,S,432,Cubic_High m-3m,<111>,-0.18860386,-0.03931558 +4,S,432,Cubic_High m-3m,<111>,-0.95342022,0.28034255 +4,S,432,Cubic_High m-3m,<111>,-0.95342022,0.28034255 +4,S,432,Cubic_High m-3m,<111>,0.05393038,-0.72435237 +4,S,432,Cubic_High m-3m,<111>,0.05393038,-0.72435237 +4,S,432,Cubic_High m-3m,<111>,0.32552487,0.36607030 +4,S,432,Cubic_High m-3m,<111>,0.32552487,0.36607030 +4,S,23,Cubic_Low m-3,<001>,0.28680417,-0.17232933 +4,S,23,Cubic_Low m-3,<001>,0.28680417,-0.17232933 +4,S,23,Cubic_Low m-3,<001>,-0.24484029,0.49188327 +4,S,23,Cubic_Low m-3,<001>,-0.24484029,0.49188327 +4,S,23,Cubic_Low m-3,<001>,-0.60452159,-0.45318449 +4,S,23,Cubic_Low m-3,<001>,-0.60452159,-0.45318449 +4,S,23,Cubic_Low m-3,<011>,-0.10210173,-0.35677249 +4,S,23,Cubic_Low m-3,<011>,-0.10210173,-0.35677249 +4,S,23,Cubic_Low m-3,<011>,0.05082713,0.16212166 +4,S,23,Cubic_Low m-3,<011>,0.05082713,0.16212166 +4,S,23,Cubic_Low m-3,<011>,-0.51528578,0.08033568 +4,S,23,Cubic_Low m-3,<011>,-0.51528578,0.08033568 +4,S,23,Cubic_Low m-3,<011>,0.66277774,0.13767834 +4,S,23,Cubic_Low m-3,<011>,0.66277774,0.13767834 +4,S,23,Cubic_Low m-3,<011>,0.53201127,-0.63556087 +4,S,23,Cubic_Low m-3,<011>,0.53201127,-0.63556087 +4,S,23,Cubic_Low m-3,<011>,0.23465019,0.79455715 +4,S,23,Cubic_Low m-3,<011>,0.23465019,0.79455715 +4,S,23,Cubic_Low m-3,<111>,-0.18860386,-0.03931558 +4,S,23,Cubic_Low m-3,<111>,-0.18860386,-0.03931558 +4,S,23,Cubic_Low m-3,<111>,0.05393038,-0.72435237 +4,S,23,Cubic_Low m-3,<111>,0.05393038,-0.72435237 +4,S,23,Cubic_Low m-3,<111>,0.32552487,0.36607030 +4,S,23,Cubic_Low m-3,<111>,0.32552487,0.36607030 +4,S,23,Cubic_Low m-3,<111>,-0.95342022,0.28034255 +4,S,23,Cubic_Low m-3,<111>,-0.95342022,0.28034255 +4,S,622,Hexagonal_High 6/mmm,<0001>,0.28680417,-0.17232933 +4,S,622,Hexagonal_High 6/mmm,<0001>,0.28680417,-0.17232933 +4,S,622,Hexagonal_High 6/mmm,<10-10>,-0.24484029,0.49188327 +4,S,622,Hexagonal_High 6/mmm,<10-10>,-0.24484029,0.49188327 +4,S,622,Hexagonal_High 6/mmm,<10-10>,0.46389385,0.85072490 +4,S,622,Hexagonal_High 6/mmm,<10-10>,0.46389385,0.85072490 +4,S,622,Hexagonal_High 6/mmm,<10-10>,-0.56796689,-0.08099711 +4,S,622,Hexagonal_High 6/mmm,<10-10>,-0.56796689,-0.08099711 +4,S,622,Hexagonal_High 6/mmm,<11-20>,0.04451583,0.71014161 +4,S,622,Hexagonal_High 6/mmm,<11-20>,0.04451583,0.71014161 +4,S,622,Hexagonal_High 6/mmm,<11-20>,-0.44383848,0.22854812 +4,S,622,Hexagonal_High 6/mmm,<11-20>,-0.44383848,0.22854812 +4,S,622,Hexagonal_High 6/mmm,<11-20>,-0.60452159,-0.45318449 +4,S,622,Hexagonal_High 6/mmm,<11-20>,-0.60452159,-0.45318449 +4,S,6,Hexagonal_Low 6/m,<0001>,0.28680417,-0.17232933 +4,S,6,Hexagonal_Low 6/m,<0001>,0.28680417,-0.17232933 +4,S,6,Hexagonal_Low 6/m,<10-10>,-0.24484029,0.49188327 +4,S,6,Hexagonal_Low 6/m,<10-10>,-0.24484029,0.49188327 +4,S,6,Hexagonal_Low 6/m,<10-10>,-0.56796689,-0.08099711 +4,S,6,Hexagonal_Low 6/m,<10-10>,-0.56796689,-0.08099711 +4,S,6,Hexagonal_Low 6/m,<10-10>,0.46389385,0.85072490 +4,S,6,Hexagonal_Low 6/m,<10-10>,0.46389385,0.85072490 +4,S,6,Hexagonal_Low 6/m,<11-20>,-0.44383848,0.22854812 +4,S,6,Hexagonal_Low 6/m,<11-20>,-0.44383848,0.22854812 +4,S,6,Hexagonal_Low 6/m,<11-20>,-0.60452159,-0.45318449 +4,S,6,Hexagonal_Low 6/m,<11-20>,-0.60452159,-0.45318449 +4,S,6,Hexagonal_Low 6/m,<11-20>,0.04451583,0.71014161 +4,S,6,Hexagonal_Low 6/m,<11-20>,0.04451583,0.71014161 +4,S,32,Trigonal_High -3m,<0001>,0.28680417,-0.17232933 +4,S,32,Trigonal_High -3m,<0001>,0.28680417,-0.17232933 +4,S,32,Trigonal_High -3m,<0-110>,-0.56796689,-0.08099711 +4,S,32,Trigonal_High -3m,<0-110>,-0.56796689,-0.08099711 +4,S,32,Trigonal_High -3m,<0-110>,-0.24484029,0.49188327 +4,S,32,Trigonal_High -3m,<0-110>,-0.24484029,0.49188327 +4,S,32,Trigonal_High -3m,<0-110>,0.46389385,0.85072490 +4,S,32,Trigonal_High -3m,<0-110>,0.46389385,0.85072490 +4,S,32,Trigonal_High -3m,<1-100>,0.46389385,0.85072490 +4,S,32,Trigonal_High -3m,<1-100>,0.46389385,0.85072490 +4,S,32,Trigonal_High -3m,<1-100>,-0.24484029,0.49188327 +4,S,32,Trigonal_High -3m,<1-100>,-0.24484029,0.49188327 +4,S,32,Trigonal_High -3m,<1-100>,-0.56796689,-0.08099711 +4,S,32,Trigonal_High -3m,<1-100>,-0.56796689,-0.08099711 +4,S,3,Trigonal_Low -3,<0001>,0.28680417,-0.17232933 +4,S,3,Trigonal_Low -3,<0001>,0.28680417,-0.17232933 +4,S,3,Trigonal_Low -3,<-1-120>,-0.44383848,0.22854812 +4,S,3,Trigonal_Low -3,<-1-120>,-0.44383848,0.22854812 +4,S,3,Trigonal_Low -3,<-1-120>,0.04451583,0.71014161 +4,S,3,Trigonal_Low -3,<-1-120>,0.04451583,0.71014161 +4,S,3,Trigonal_Low -3,<-1-120>,-0.60452159,-0.45318449 +4,S,3,Trigonal_Low -3,<-1-120>,-0.60452159,-0.45318449 +4,S,3,Trigonal_Low -3,<2-1-10>,0.04451583,0.71014161 +4,S,3,Trigonal_Low -3,<2-1-10>,0.04451583,0.71014161 +4,S,3,Trigonal_Low -3,<2-1-10>,-0.60452159,-0.45318449 +4,S,3,Trigonal_Low -3,<2-1-10>,-0.60452159,-0.45318449 +4,S,3,Trigonal_Low -3,<2-1-10>,-0.44383848,0.22854812 +4,S,3,Trigonal_Low -3,<2-1-10>,-0.44383848,0.22854812 +4,S,422,Tetragonal_High 4/mmm,<001>,0.28680417,-0.17232933 +4,S,422,Tetragonal_High 4/mmm,<001>,0.28680417,-0.17232933 +4,S,422,Tetragonal_High 4/mmm,<100>,-0.24484029,0.49188327 +4,S,422,Tetragonal_High 4/mmm,<100>,-0.24484029,0.49188327 +4,S,422,Tetragonal_High 4/mmm,<100>,-0.60452159,-0.45318449 +4,S,422,Tetragonal_High 4/mmm,<100>,-0.60452159,-0.45318449 +4,S,422,Tetragonal_High 4/mmm,<110>,-0.51528578,0.08033568 +4,S,422,Tetragonal_High 4/mmm,<110>,-0.51528578,0.08033568 +4,S,422,Tetragonal_High 4/mmm,<110>,0.23465019,0.79455715 +4,S,422,Tetragonal_High 4/mmm,<110>,0.23465019,0.79455715 +4,S,4,Tetragonal_Low 4/m,<001>,0.28680417,-0.17232933 +4,S,4,Tetragonal_Low 4/m,<001>,0.28680417,-0.17232933 +4,S,4,Tetragonal_Low 4/m,<100>,-0.24484029,0.49188327 +4,S,4,Tetragonal_Low 4/m,<100>,-0.24484029,0.49188327 +4,S,4,Tetragonal_Low 4/m,<100>,-0.60452159,-0.45318449 +4,S,4,Tetragonal_Low 4/m,<100>,-0.60452159,-0.45318449 +4,S,4,Tetragonal_Low 4/m,<110>,-0.51528578,0.08033568 +4,S,4,Tetragonal_Low 4/m,<110>,-0.51528578,0.08033568 +4,S,4,Tetragonal_Low 4/m,<110>,0.23465019,0.79455715 +4,S,4,Tetragonal_Low 4/m,<110>,0.23465019,0.79455715 +4,S,222,OrthoRhombic mmm,<001>,0.28680417,-0.17232933 +4,S,222,OrthoRhombic mmm,<001>,0.28680417,-0.17232933 +4,S,222,OrthoRhombic mmm,<100>,-0.24484029,0.49188327 +4,S,222,OrthoRhombic mmm,<100>,-0.24484029,0.49188327 +4,S,222,OrthoRhombic mmm,<010>,-0.60452159,-0.45318449 +4,S,222,OrthoRhombic mmm,<010>,-0.60452159,-0.45318449 +4,S,2,Monoclinic 2/m,<001>,0.28680417,-0.17232933 +4,S,2,Monoclinic 2/m,<001>,0.28680417,-0.17232933 +4,S,2,Monoclinic 2/m,<100>,-0.24484029,0.49188327 +4,S,2,Monoclinic 2/m,<100>,-0.24484029,0.49188327 +4,S,2,Monoclinic 2/m,<010>,-0.60452159,-0.45318449 +4,S,2,Monoclinic 2/m,<010>,-0.60452159,-0.45318449 +4,S,1,Triclinic -1,<001>,0.28680417,-0.17232933 +4,S,1,Triclinic -1,<001>,0.28680417,-0.17232933 +4,S,1,Triclinic -1,<100>,-0.24484029,0.49188327 +4,S,1,Triclinic -1,<100>,-0.24484029,0.49188327 +4,S,1,Triclinic -1,<010>,-0.60452159,-0.45318449 +4,S,1,Triclinic -1,<010>,-0.60452159,-0.45318449 +5,S1,432,Cubic_High m-3m,<001>,0.21949113,-0.15368934 +5,S1,432,Cubic_High m-3m,<001>,0.21949113,-0.15368934 +5,S1,432,Cubic_High m-3m,<001>,-0.27563271,0.54803588 +5,S1,432,Cubic_High m-3m,<001>,-0.27563271,0.54803588 +5,S1,432,Cubic_High m-3m,<001>,-0.67666040,-0.43958718 +5,S1,432,Cubic_High m-3m,<001>,-0.67666040,-0.43958718 +5,S1,432,Cubic_High m-3m,<011>,-0.16458398,-0.32881732 +5,S1,432,Cubic_High m-3m,<011>,-0.16458398,-0.32881732 +5,S1,432,Cubic_High m-3m,<011>,0.00330698,0.18643213 +5,S1,432,Cubic_High m-3m,<011>,0.00330698,0.18643213 +5,S1,432,Cubic_High m-3m,<011>,-0.58699928,0.12695795 +5,S1,432,Cubic_High m-3m,<011>,-0.58699928,0.12695795 +5,S1,432,Cubic_High m-3m,<011>,0.44339083,-0.59283977 +5,S1,432,Cubic_High m-3m,<011>,0.44339083,-0.59283977 +5,S1,432,Cubic_High m-3m,<011>,0.25307574,0.80242128 +5,S1,432,Cubic_High m-3m,<011>,0.25307574,0.80242128 +5,S1,432,Cubic_High m-3m,<011>,0.59413370,0.11875112 +5,S1,432,Cubic_High m-3m,<011>,0.59413370,0.11875112 +5,S1,432,Cubic_High m-3m,<111>,-0.24845851,-0.00701408 +5,S1,432,Cubic_High m-3m,<111>,-0.24845851,-0.00701408 +5,S1,432,Cubic_High m-3m,<111>,0.84285611,-0.28479985 +5,S1,432,Cubic_High m-3m,<111>,0.84285611,-0.28479985 +5,S1,432,Cubic_High m-3m,<111>,-0.00404551,-0.68569013 +5,S1,432,Cubic_High m-3m,<111>,-0.00404551,-0.68569013 +5,S1,432,Cubic_High m-3m,<111>,0.29179833,0.36693564 +5,S1,432,Cubic_High m-3m,<111>,0.29179833,0.36693564 +5,S1,23,Cubic_Low m-3,<001>,0.21949113,-0.15368934 +5,S1,23,Cubic_Low m-3,<001>,0.21949113,-0.15368934 +5,S1,23,Cubic_Low m-3,<001>,-0.27563271,0.54803588 +5,S1,23,Cubic_Low m-3,<001>,-0.27563271,0.54803588 +5,S1,23,Cubic_Low m-3,<001>,-0.67666040,-0.43958718 +5,S1,23,Cubic_Low m-3,<001>,-0.67666040,-0.43958718 +5,S1,23,Cubic_Low m-3,<011>,-0.16458398,-0.32881732 +5,S1,23,Cubic_Low m-3,<011>,-0.16458398,-0.32881732 +5,S1,23,Cubic_Low m-3,<011>,0.00330698,0.18643213 +5,S1,23,Cubic_Low m-3,<011>,0.00330698,0.18643213 +5,S1,23,Cubic_Low m-3,<011>,-0.58699928,0.12695795 +5,S1,23,Cubic_Low m-3,<011>,-0.58699928,0.12695795 +5,S1,23,Cubic_Low m-3,<011>,0.59413370,0.11875112 +5,S1,23,Cubic_Low m-3,<011>,0.59413370,0.11875112 +5,S1,23,Cubic_Low m-3,<011>,0.44339083,-0.59283977 +5,S1,23,Cubic_Low m-3,<011>,0.44339083,-0.59283977 +5,S1,23,Cubic_Low m-3,<011>,0.25307574,0.80242128 +5,S1,23,Cubic_Low m-3,<011>,0.25307574,0.80242128 +5,S1,23,Cubic_Low m-3,<111>,-0.24845851,-0.00701408 +5,S1,23,Cubic_Low m-3,<111>,-0.24845851,-0.00701408 +5,S1,23,Cubic_Low m-3,<111>,-0.00404551,-0.68569013 +5,S1,23,Cubic_Low m-3,<111>,-0.00404551,-0.68569013 +5,S1,23,Cubic_Low m-3,<111>,0.29179833,0.36693564 +5,S1,23,Cubic_Low m-3,<111>,0.29179833,0.36693564 +5,S1,23,Cubic_Low m-3,<111>,0.84285611,-0.28479985 +5,S1,23,Cubic_Low m-3,<111>,0.84285611,-0.28479985 +5,S1,622,Hexagonal_High 6/mmm,<0001>,0.21949113,-0.15368934 +5,S1,622,Hexagonal_High 6/mmm,<0001>,0.21949113,-0.15368934 +5,S1,622,Hexagonal_High 6/mmm,<10-10>,-0.27563271,0.54803588 +5,S1,622,Hexagonal_High 6/mmm,<10-10>,-0.27563271,0.54803588 +5,S1,622,Hexagonal_High 6/mmm,<10-10>,0.48828647,0.82344401 +5,S1,622,Hexagonal_High 6/mmm,<10-10>,0.48828647,0.82344401 +5,S1,622,Hexagonal_High 6/mmm,<10-10>,-0.64565634,-0.04465702 +5,S1,622,Hexagonal_High 6/mmm,<10-10>,-0.64565634,-0.04465702 +5,S1,622,Hexagonal_High 6/mmm,<11-20>,0.04891828,0.74287571 +5,S1,622,Hexagonal_High 6/mmm,<11-20>,0.04891828,0.74287571 +5,S1,622,Hexagonal_High 6/mmm,<11-20>,-0.50510566,0.28265703 +5,S1,622,Hexagonal_High 6/mmm,<11-20>,-0.50510566,0.28265703 +5,S1,622,Hexagonal_High 6/mmm,<11-20>,-0.67666040,-0.43958718 +5,S1,622,Hexagonal_High 6/mmm,<11-20>,-0.67666040,-0.43958718 +5,S1,6,Hexagonal_Low 6/m,<0001>,0.21949113,-0.15368934 +5,S1,6,Hexagonal_Low 6/m,<0001>,0.21949113,-0.15368934 +5,S1,6,Hexagonal_Low 6/m,<10-10>,-0.27563271,0.54803588 +5,S1,6,Hexagonal_Low 6/m,<10-10>,-0.27563271,0.54803588 +5,S1,6,Hexagonal_Low 6/m,<10-10>,-0.64565634,-0.04465702 +5,S1,6,Hexagonal_Low 6/m,<10-10>,-0.64565634,-0.04465702 +5,S1,6,Hexagonal_Low 6/m,<10-10>,0.48828647,0.82344401 +5,S1,6,Hexagonal_Low 6/m,<10-10>,0.48828647,0.82344401 +5,S1,6,Hexagonal_Low 6/m,<11-20>,-0.50510566,0.28265703 +5,S1,6,Hexagonal_Low 6/m,<11-20>,-0.50510566,0.28265703 +5,S1,6,Hexagonal_Low 6/m,<11-20>,-0.67666040,-0.43958718 +5,S1,6,Hexagonal_Low 6/m,<11-20>,-0.67666040,-0.43958718 +5,S1,6,Hexagonal_Low 6/m,<11-20>,0.04891828,0.74287571 +5,S1,6,Hexagonal_Low 6/m,<11-20>,0.04891828,0.74287571 +5,S1,32,Trigonal_High -3m,<0001>,0.21949113,-0.15368934 +5,S1,32,Trigonal_High -3m,<0001>,0.21949113,-0.15368934 +5,S1,32,Trigonal_High -3m,<0-110>,-0.64565634,-0.04465702 +5,S1,32,Trigonal_High -3m,<0-110>,-0.64565634,-0.04465702 +5,S1,32,Trigonal_High -3m,<0-110>,-0.27563271,0.54803588 +5,S1,32,Trigonal_High -3m,<0-110>,-0.27563271,0.54803588 +5,S1,32,Trigonal_High -3m,<0-110>,0.48828647,0.82344401 +5,S1,32,Trigonal_High -3m,<0-110>,0.48828647,0.82344401 +5,S1,32,Trigonal_High -3m,<1-100>,0.48828647,0.82344401 +5,S1,32,Trigonal_High -3m,<1-100>,0.48828647,0.82344401 +5,S1,32,Trigonal_High -3m,<1-100>,-0.27563271,0.54803588 +5,S1,32,Trigonal_High -3m,<1-100>,-0.27563271,0.54803588 +5,S1,32,Trigonal_High -3m,<1-100>,-0.64565634,-0.04465702 +5,S1,32,Trigonal_High -3m,<1-100>,-0.64565634,-0.04465702 +5,S1,3,Trigonal_Low -3,<0001>,0.21949113,-0.15368934 +5,S1,3,Trigonal_Low -3,<0001>,0.21949113,-0.15368934 +5,S1,3,Trigonal_Low -3,<-1-120>,-0.50510566,0.28265703 +5,S1,3,Trigonal_Low -3,<-1-120>,-0.50510566,0.28265703 +5,S1,3,Trigonal_Low -3,<-1-120>,0.04891828,0.74287571 +5,S1,3,Trigonal_Low -3,<-1-120>,0.04891828,0.74287571 +5,S1,3,Trigonal_Low -3,<-1-120>,-0.67666040,-0.43958718 +5,S1,3,Trigonal_Low -3,<-1-120>,-0.67666040,-0.43958718 +5,S1,3,Trigonal_Low -3,<2-1-10>,0.04891828,0.74287571 +5,S1,3,Trigonal_Low -3,<2-1-10>,0.04891828,0.74287571 +5,S1,3,Trigonal_Low -3,<2-1-10>,-0.67666040,-0.43958718 +5,S1,3,Trigonal_Low -3,<2-1-10>,-0.67666040,-0.43958718 +5,S1,3,Trigonal_Low -3,<2-1-10>,-0.50510566,0.28265703 +5,S1,3,Trigonal_Low -3,<2-1-10>,-0.50510566,0.28265703 +5,S1,422,Tetragonal_High 4/mmm,<001>,0.21949113,-0.15368934 +5,S1,422,Tetragonal_High 4/mmm,<001>,0.21949113,-0.15368934 +5,S1,422,Tetragonal_High 4/mmm,<100>,-0.27563271,0.54803588 +5,S1,422,Tetragonal_High 4/mmm,<100>,-0.27563271,0.54803588 +5,S1,422,Tetragonal_High 4/mmm,<100>,-0.67666040,-0.43958718 +5,S1,422,Tetragonal_High 4/mmm,<100>,-0.67666040,-0.43958718 +5,S1,422,Tetragonal_High 4/mmm,<110>,-0.58699928,0.12695795 +5,S1,422,Tetragonal_High 4/mmm,<110>,-0.58699928,0.12695795 +5,S1,422,Tetragonal_High 4/mmm,<110>,0.25307574,0.80242128 +5,S1,422,Tetragonal_High 4/mmm,<110>,0.25307574,0.80242128 +5,S1,4,Tetragonal_Low 4/m,<001>,0.21949113,-0.15368934 +5,S1,4,Tetragonal_Low 4/m,<001>,0.21949113,-0.15368934 +5,S1,4,Tetragonal_Low 4/m,<100>,-0.27563271,0.54803588 +5,S1,4,Tetragonal_Low 4/m,<100>,-0.27563271,0.54803588 +5,S1,4,Tetragonal_Low 4/m,<100>,-0.67666040,-0.43958718 +5,S1,4,Tetragonal_Low 4/m,<100>,-0.67666040,-0.43958718 +5,S1,4,Tetragonal_Low 4/m,<110>,-0.58699928,0.12695795 +5,S1,4,Tetragonal_Low 4/m,<110>,-0.58699928,0.12695795 +5,S1,4,Tetragonal_Low 4/m,<110>,0.25307574,0.80242128 +5,S1,4,Tetragonal_Low 4/m,<110>,0.25307574,0.80242128 +5,S1,222,OrthoRhombic mmm,<001>,0.21949113,-0.15368934 +5,S1,222,OrthoRhombic mmm,<001>,0.21949113,-0.15368934 +5,S1,222,OrthoRhombic mmm,<100>,-0.27563271,0.54803588 +5,S1,222,OrthoRhombic mmm,<100>,-0.27563271,0.54803588 +5,S1,222,OrthoRhombic mmm,<010>,-0.67666040,-0.43958718 +5,S1,222,OrthoRhombic mmm,<010>,-0.67666040,-0.43958718 +5,S1,2,Monoclinic 2/m,<001>,0.21949113,-0.15368934 +5,S1,2,Monoclinic 2/m,<001>,0.21949113,-0.15368934 +5,S1,2,Monoclinic 2/m,<100>,-0.27563271,0.54803588 +5,S1,2,Monoclinic 2/m,<100>,-0.27563271,0.54803588 +5,S1,2,Monoclinic 2/m,<010>,-0.67666040,-0.43958718 +5,S1,2,Monoclinic 2/m,<010>,-0.67666040,-0.43958718 +5,S1,1,Triclinic -1,<001>,0.21949113,-0.15368934 +5,S1,1,Triclinic -1,<001>,0.21949113,-0.15368934 +5,S1,1,Triclinic -1,<100>,-0.27563271,0.54803588 +5,S1,1,Triclinic -1,<100>,-0.27563271,0.54803588 +5,S1,1,Triclinic -1,<010>,-0.67666040,-0.43958718 +5,S1,1,Triclinic -1,<010>,-0.67666040,-0.43958718 +6,S2,432,Cubic_High m-3m,<001>,0.22294991,-0.22294991 +6,S2,432,Cubic_High m-3m,<001>,0.22294991,-0.22294991 +6,S2,432,Cubic_High m-3m,<001>,-0.14878083,0.54202863 +6,S2,432,Cubic_High m-3m,<001>,-0.14878083,0.54202863 +6,S2,432,Cubic_High m-3m,<001>,-0.71285088,-0.31878850 +6,S2,432,Cubic_High m-3m,<001>,-0.71285088,-0.31878850 +6,S2,432,Cubic_High m-3m,<011>,-0.19390695,-0.32379584 +6,S2,432,Cubic_High m-3m,<011>,-0.19390695,-0.32379584 +6,S2,432,Cubic_High m-3m,<011>,0.06518126,0.15190139 +6,S2,432,Cubic_High m-3m,<011>,0.06518126,0.15190139 +6,S2,432,Cubic_High m-3m,<011>,-0.51081767,0.19652653 +6,S2,432,Cubic_High m-3m,<011>,-0.51081767,0.19652653 +6,S2,432,Cubic_High m-3m,<011>,0.36865582,-0.71745210 +6,S2,432,Cubic_High m-3m,<011>,0.36865582,-0.71745210 +6,S2,432,Cubic_High m-3m,<011>,0.38987231,0.72110759 +6,S2,432,Cubic_High m-3m,<011>,0.38987231,0.72110759 +6,S2,432,Cubic_High m-3m,<011>,0.64854511,-0.00477946 +6,S2,432,Cubic_High m-3m,<011>,0.64854511,-0.00477946 +6,S2,432,Cubic_High m-3m,<111>,-0.21312918,0.00668525 +6,S2,432,Cubic_High m-3m,<111>,-0.21312918,0.00668525 +6,S2,432,Cubic_High m-3m,<111>,0.84817392,-0.46580681 +6,S2,432,Cubic_High m-3m,<111>,0.84817392,-0.46580681 +6,S2,432,Cubic_High m-3m,<111>,-0.11168515,-0.71486516 +6,S2,432,Cubic_High m-3m,<111>,-0.11168515,-0.71486516 +6,S2,432,Cubic_High m-3m,<111>,0.37654403,0.28786998 +6,S2,432,Cubic_High m-3m,<111>,0.37654403,0.28786998 +6,S2,23,Cubic_Low m-3,<001>,0.22294991,-0.22294991 +6,S2,23,Cubic_Low m-3,<001>,0.22294991,-0.22294991 +6,S2,23,Cubic_Low m-3,<001>,-0.14878083,0.54202863 +6,S2,23,Cubic_Low m-3,<001>,-0.14878083,0.54202863 +6,S2,23,Cubic_Low m-3,<001>,-0.71285088,-0.31878850 +6,S2,23,Cubic_Low m-3,<001>,-0.71285088,-0.31878850 +6,S2,23,Cubic_Low m-3,<011>,-0.19390695,-0.32379584 +6,S2,23,Cubic_Low m-3,<011>,-0.19390695,-0.32379584 +6,S2,23,Cubic_Low m-3,<011>,0.06518126,0.15190139 +6,S2,23,Cubic_Low m-3,<011>,0.06518126,0.15190139 +6,S2,23,Cubic_Low m-3,<011>,-0.51081767,0.19652653 +6,S2,23,Cubic_Low m-3,<011>,-0.51081767,0.19652653 +6,S2,23,Cubic_Low m-3,<011>,0.64854511,-0.00477946 +6,S2,23,Cubic_Low m-3,<011>,0.64854511,-0.00477946 +6,S2,23,Cubic_Low m-3,<011>,0.36865582,-0.71745210 +6,S2,23,Cubic_Low m-3,<011>,0.36865582,-0.71745210 +6,S2,23,Cubic_Low m-3,<011>,0.38987231,0.72110759 +6,S2,23,Cubic_Low m-3,<011>,0.38987231,0.72110759 +6,S2,23,Cubic_Low m-3,<111>,-0.21312918,0.00668525 +6,S2,23,Cubic_Low m-3,<111>,-0.21312918,0.00668525 +6,S2,23,Cubic_Low m-3,<111>,-0.11168515,-0.71486516 +6,S2,23,Cubic_Low m-3,<111>,-0.11168515,-0.71486516 +6,S2,23,Cubic_Low m-3,<111>,0.37654403,0.28786998 +6,S2,23,Cubic_Low m-3,<111>,0.37654403,0.28786998 +6,S2,23,Cubic_Low m-3,<111>,0.84817392,-0.46580681 +6,S2,23,Cubic_Low m-3,<111>,0.84817392,-0.46580681 +6,S2,622,Hexagonal_High 6/mmm,<0001>,0.22294991,-0.22294991 +6,S2,622,Hexagonal_High 6/mmm,<0001>,0.22294991,-0.22294991 +6,S2,622,Hexagonal_High 6/mmm,<10-10>,-0.14878083,0.54202863 +6,S2,622,Hexagonal_High 6/mmm,<10-10>,-0.14878083,0.54202863 +6,S2,622,Hexagonal_High 6/mmm,<10-10>,0.62279896,0.71895801 +6,S2,622,Hexagonal_High 6/mmm,<10-10>,0.62279896,0.71895801 +6,S2,622,Hexagonal_High 6/mmm,<10-10>,-0.59873985,0.04687292 +6,S2,622,Hexagonal_High 6/mmm,<10-10>,-0.59873985,0.04687292 +6,S2,622,Hexagonal_High 6/mmm,<11-20>,0.18585277,0.68582873 +6,S2,622,Hexagonal_High 6/mmm,<11-20>,0.18585277,0.68582873 +6,S2,622,Hexagonal_High 6/mmm,<11-20>,-0.40642406,0.32798615 +6,S2,622,Hexagonal_High 6/mmm,<11-20>,-0.40642406,0.32798615 +6,S2,622,Hexagonal_High 6/mmm,<11-20>,-0.71285088,-0.31878850 +6,S2,622,Hexagonal_High 6/mmm,<11-20>,-0.71285088,-0.31878850 +6,S2,6,Hexagonal_Low 6/m,<0001>,0.22294991,-0.22294991 +6,S2,6,Hexagonal_Low 6/m,<0001>,0.22294991,-0.22294991 +6,S2,6,Hexagonal_Low 6/m,<10-10>,-0.14878083,0.54202863 +6,S2,6,Hexagonal_Low 6/m,<10-10>,-0.14878083,0.54202863 +6,S2,6,Hexagonal_Low 6/m,<10-10>,-0.59873985,0.04687292 +6,S2,6,Hexagonal_Low 6/m,<10-10>,-0.59873985,0.04687292 +6,S2,6,Hexagonal_Low 6/m,<10-10>,0.62279896,0.71895801 +6,S2,6,Hexagonal_Low 6/m,<10-10>,0.62279896,0.71895801 +6,S2,6,Hexagonal_Low 6/m,<11-20>,-0.40642406,0.32798615 +6,S2,6,Hexagonal_Low 6/m,<11-20>,-0.40642406,0.32798615 +6,S2,6,Hexagonal_Low 6/m,<11-20>,-0.71285088,-0.31878850 +6,S2,6,Hexagonal_Low 6/m,<11-20>,-0.71285088,-0.31878850 +6,S2,6,Hexagonal_Low 6/m,<11-20>,0.18585277,0.68582873 +6,S2,6,Hexagonal_Low 6/m,<11-20>,0.18585277,0.68582873 +6,S2,32,Trigonal_High -3m,<0001>,0.22294991,-0.22294991 +6,S2,32,Trigonal_High -3m,<0001>,0.22294991,-0.22294991 +6,S2,32,Trigonal_High -3m,<0-110>,-0.59873985,0.04687292 +6,S2,32,Trigonal_High -3m,<0-110>,-0.59873985,0.04687292 +6,S2,32,Trigonal_High -3m,<0-110>,-0.14878083,0.54202863 +6,S2,32,Trigonal_High -3m,<0-110>,-0.14878083,0.54202863 +6,S2,32,Trigonal_High -3m,<0-110>,0.62279896,0.71895801 +6,S2,32,Trigonal_High -3m,<0-110>,0.62279896,0.71895801 +6,S2,32,Trigonal_High -3m,<1-100>,0.62279896,0.71895801 +6,S2,32,Trigonal_High -3m,<1-100>,0.62279896,0.71895801 +6,S2,32,Trigonal_High -3m,<1-100>,-0.14878083,0.54202863 +6,S2,32,Trigonal_High -3m,<1-100>,-0.14878083,0.54202863 +6,S2,32,Trigonal_High -3m,<1-100>,-0.59873985,0.04687292 +6,S2,32,Trigonal_High -3m,<1-100>,-0.59873985,0.04687292 +6,S2,3,Trigonal_Low -3,<0001>,0.22294991,-0.22294991 +6,S2,3,Trigonal_Low -3,<0001>,0.22294991,-0.22294991 +6,S2,3,Trigonal_Low -3,<-1-120>,-0.40642406,0.32798615 +6,S2,3,Trigonal_Low -3,<-1-120>,-0.40642406,0.32798615 +6,S2,3,Trigonal_Low -3,<-1-120>,0.18585277,0.68582873 +6,S2,3,Trigonal_Low -3,<-1-120>,0.18585277,0.68582873 +6,S2,3,Trigonal_Low -3,<-1-120>,-0.71285088,-0.31878850 +6,S2,3,Trigonal_Low -3,<-1-120>,-0.71285088,-0.31878850 +6,S2,3,Trigonal_Low -3,<2-1-10>,0.18585277,0.68582873 +6,S2,3,Trigonal_Low -3,<2-1-10>,0.18585277,0.68582873 +6,S2,3,Trigonal_Low -3,<2-1-10>,-0.71285088,-0.31878850 +6,S2,3,Trigonal_Low -3,<2-1-10>,-0.71285088,-0.31878850 +6,S2,3,Trigonal_Low -3,<2-1-10>,-0.40642406,0.32798615 +6,S2,3,Trigonal_Low -3,<2-1-10>,-0.40642406,0.32798615 +6,S2,422,Tetragonal_High 4/mmm,<001>,0.22294991,-0.22294991 +6,S2,422,Tetragonal_High 4/mmm,<001>,0.22294991,-0.22294991 +6,S2,422,Tetragonal_High 4/mmm,<100>,-0.14878083,0.54202863 +6,S2,422,Tetragonal_High 4/mmm,<100>,-0.14878083,0.54202863 +6,S2,422,Tetragonal_High 4/mmm,<100>,-0.71285088,-0.31878850 +6,S2,422,Tetragonal_High 4/mmm,<100>,-0.71285088,-0.31878850 +6,S2,422,Tetragonal_High 4/mmm,<110>,-0.51081767,0.19652653 +6,S2,422,Tetragonal_High 4/mmm,<110>,-0.51081767,0.19652653 +6,S2,422,Tetragonal_High 4/mmm,<110>,0.38987231,0.72110759 +6,S2,422,Tetragonal_High 4/mmm,<110>,0.38987231,0.72110759 +6,S2,4,Tetragonal_Low 4/m,<001>,0.22294991,-0.22294991 +6,S2,4,Tetragonal_Low 4/m,<001>,0.22294991,-0.22294991 +6,S2,4,Tetragonal_Low 4/m,<100>,-0.14878083,0.54202863 +6,S2,4,Tetragonal_Low 4/m,<100>,-0.14878083,0.54202863 +6,S2,4,Tetragonal_Low 4/m,<100>,-0.71285088,-0.31878850 +6,S2,4,Tetragonal_Low 4/m,<100>,-0.71285088,-0.31878850 +6,S2,4,Tetragonal_Low 4/m,<110>,-0.51081767,0.19652653 +6,S2,4,Tetragonal_Low 4/m,<110>,-0.51081767,0.19652653 +6,S2,4,Tetragonal_Low 4/m,<110>,0.38987231,0.72110759 +6,S2,4,Tetragonal_Low 4/m,<110>,0.38987231,0.72110759 +6,S2,222,OrthoRhombic mmm,<001>,0.22294991,-0.22294991 +6,S2,222,OrthoRhombic mmm,<001>,0.22294991,-0.22294991 +6,S2,222,OrthoRhombic mmm,<100>,-0.14878083,0.54202863 +6,S2,222,OrthoRhombic mmm,<100>,-0.14878083,0.54202863 +6,S2,222,OrthoRhombic mmm,<010>,-0.71285088,-0.31878850 +6,S2,222,OrthoRhombic mmm,<010>,-0.71285088,-0.31878850 +6,S2,2,Monoclinic 2/m,<001>,0.22294991,-0.22294991 +6,S2,2,Monoclinic 2/m,<001>,0.22294991,-0.22294991 +6,S2,2,Monoclinic 2/m,<100>,-0.14878083,0.54202863 +6,S2,2,Monoclinic 2/m,<100>,-0.14878083,0.54202863 +6,S2,2,Monoclinic 2/m,<010>,-0.71285088,-0.31878850 +6,S2,2,Monoclinic 2/m,<010>,-0.71285088,-0.31878850 +6,S2,1,Triclinic -1,<001>,0.22294991,-0.22294991 +6,S2,1,Triclinic -1,<001>,0.22294991,-0.22294991 +6,S2,1,Triclinic -1,<100>,-0.14878083,0.54202863 +6,S2,1,Triclinic -1,<100>,-0.14878083,0.54202863 +6,S2,1,Triclinic -1,<010>,-0.71285088,-0.31878850 +6,S2,1,Triclinic -1,<010>,-0.71285088,-0.31878850 +7,R,432,Cubic_High m-3m,<001>,0.62855747,-0.44012068 +7,R,432,Cubic_High m-3m,<001>,0.62855747,-0.44012068 +7,R,432,Cubic_High m-3m,<001>,0.30551848,0.57174576 +7,R,432,Cubic_High m-3m,<001>,0.30551848,0.57174576 +7,R,432,Cubic_High m-3m,<001>,-0.23170848,-0.11285166 +7,R,432,Cubic_High m-3m,<001>,-0.23170848,-0.11285166 +7,R,432,Cubic_High m-3m,<011>,0.13996224,-0.30044719 +7,R,432,Cubic_High m-3m,<011>,0.13996224,-0.30044719 +7,R,432,Cubic_High m-3m,<011>,0.58689557,0.12065358 +7,R,432,Cubic_High m-3m,<011>,0.58689557,0.12065358 +7,R,432,Cubic_High m-3m,<011>,-0.00159962,0.21998851 +7,R,432,Cubic_High m-3m,<011>,-0.00159962,0.21998851 +7,R,432,Cubic_High m-3m,<011>,-0.23087789,0.86925308 +7,R,432,Cubic_High m-3m,<011>,-0.23087789,0.86925308 +7,R,432,Cubic_High m-3m,<011>,-0.45964639,-0.54043574 +7,R,432,Cubic_High m-3m,<011>,-0.45964639,-0.54043574 +7,R,432,Cubic_High m-3m,<011>,-0.60359455,0.16859556 +7,R,432,Cubic_High m-3m,<011>,-0.60359455,0.16859556 +7,R,432,Cubic_High m-3m,<111>,0.24031798,0.01205228 +7,R,432,Cubic_High m-3m,<111>,0.24031798,0.01205228 +7,R,432,Cubic_High m-3m,<111>,-0.28857146,0.41624290 +7,R,432,Cubic_High m-3m,<111>,-0.28857146,0.41624290 +7,R,432,Cubic_High m-3m,<111>,-0.02992118,-0.63904393 +7,R,432,Cubic_High m-3m,<111>,-0.02992118,-0.63904393 +7,R,432,Cubic_High m-3m,<111>,-0.85342957,-0.23847956 +7,R,432,Cubic_High m-3m,<111>,-0.85342957,-0.23847956 +7,R,23,Cubic_Low m-3,<001>,0.62855747,-0.44012068 +7,R,23,Cubic_Low m-3,<001>,0.62855747,-0.44012068 +7,R,23,Cubic_Low m-3,<001>,0.30551848,0.57174576 +7,R,23,Cubic_Low m-3,<001>,0.30551848,0.57174576 +7,R,23,Cubic_Low m-3,<001>,-0.23170848,-0.11285166 +7,R,23,Cubic_Low m-3,<001>,-0.23170848,-0.11285166 +7,R,23,Cubic_Low m-3,<011>,0.13996224,-0.30044719 +7,R,23,Cubic_Low m-3,<011>,0.13996224,-0.30044719 +7,R,23,Cubic_Low m-3,<011>,0.58689557,0.12065358 +7,R,23,Cubic_Low m-3,<011>,0.58689557,0.12065358 +7,R,23,Cubic_Low m-3,<011>,-0.00159962,0.21998851 +7,R,23,Cubic_Low m-3,<011>,-0.00159962,0.21998851 +7,R,23,Cubic_Low m-3,<011>,-0.60359455,0.16859556 +7,R,23,Cubic_Low m-3,<011>,-0.60359455,0.16859556 +7,R,23,Cubic_Low m-3,<011>,-0.23087789,0.86925308 +7,R,23,Cubic_Low m-3,<011>,-0.23087789,0.86925308 +7,R,23,Cubic_Low m-3,<011>,-0.45964639,-0.54043574 +7,R,23,Cubic_Low m-3,<011>,-0.45964639,-0.54043574 +7,R,23,Cubic_Low m-3,<111>,0.24031798,0.01205228 +7,R,23,Cubic_Low m-3,<111>,0.24031798,0.01205228 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+7,R,3,Trigonal_Low -3,<-1-120>,-0.54406891,-0.74073678 +7,R,3,Trigonal_Low -3,<-1-120>,-0.54406891,-0.74073678 +7,R,3,Trigonal_Low -3,<-1-120>,-0.23170848,-0.11285166 +7,R,3,Trigonal_Low -3,<-1-120>,-0.23170848,-0.11285166 +7,R,3,Trigonal_Low -3,<2-1-10>,-0.54406891,-0.74073678 +7,R,3,Trigonal_Low -3,<2-1-10>,-0.54406891,-0.74073678 +7,R,3,Trigonal_Low -3,<2-1-10>,-0.23170848,-0.11285166 +7,R,3,Trigonal_Low -3,<2-1-10>,-0.23170848,-0.11285166 +7,R,3,Trigonal_Low -3,<2-1-10>,0.08671073,0.33019107 +7,R,3,Trigonal_Low -3,<2-1-10>,0.08671073,0.33019107 +7,R,422,Tetragonal_High 4/mmm,<001>,0.62855747,-0.44012068 +7,R,422,Tetragonal_High 4/mmm,<001>,0.62855747,-0.44012068 +7,R,422,Tetragonal_High 4/mmm,<100>,0.30551848,0.57174576 +7,R,422,Tetragonal_High 4/mmm,<100>,0.30551848,0.57174576 +7,R,422,Tetragonal_High 4/mmm,<100>,-0.23170848,-0.11285166 +7,R,422,Tetragonal_High 4/mmm,<100>,-0.23170848,-0.11285166 +7,R,422,Tetragonal_High 4/mmm,<110>,-0.00159962,0.21998851 +7,R,422,Tetragonal_High 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+8,RC_rd1,32,Trigonal_High -3m,<1-100>,-0.38574350,0.62783433 +8,RC_rd1,32,Trigonal_High -3m,<1-100>,-0.38574350,0.62783433 +8,RC_rd1,32,Trigonal_High -3m,<1-100>,1.00000000,0.00000000 +8,RC_rd1,32,Trigonal_High -3m,<1-100>,1.00000000,0.00000000 +8,RC_rd1,32,Trigonal_High -3m,<1-100>,0.38574350,0.62783433 +8,RC_rd1,32,Trigonal_High -3m,<1-100>,0.38574350,0.62783433 +8,RC_rd1,3,Trigonal_Low -3,<0001>,-0.00000000,-0.17632698 +8,RC_rd1,3,Trigonal_Low -3,<0001>,-0.00000000,-0.17632698 +8,RC_rd1,3,Trigonal_Low -3,<-1-120>,0.73955419,0.40123166 +8,RC_rd1,3,Trigonal_Low -3,<-1-120>,0.73955419,0.40123166 +8,RC_rd1,3,Trigonal_Low -3,<-1-120>,-0.73955419,0.40123166 +8,RC_rd1,3,Trigonal_Low -3,<-1-120>,-0.73955419,0.40123166 +8,RC_rd1,3,Trigonal_Low -3,<-1-120>,0.00000000,0.70020754 +8,RC_rd1,3,Trigonal_Low -3,<-1-120>,0.00000000,0.70020754 +8,RC_rd1,3,Trigonal_Low -3,<2-1-10>,-0.73955419,0.40123166 +8,RC_rd1,3,Trigonal_Low -3,<2-1-10>,-0.73955419,0.40123166 +8,RC_rd1,3,Trigonal_Low -3,<2-1-10>,0.00000000,0.70020754 +8,RC_rd1,3,Trigonal_Low -3,<2-1-10>,0.00000000,0.70020754 +8,RC_rd1,3,Trigonal_Low -3,<2-1-10>,0.73955419,0.40123166 +8,RC_rd1,3,Trigonal_Low -3,<2-1-10>,0.73955419,0.40123166 +8,RC_rd1,422,Tetragonal_High 4/mmm,<001>,-0.00000000,-0.17632698 +8,RC_rd1,422,Tetragonal_High 4/mmm,<001>,-0.00000000,-0.17632698 +8,RC_rd1,422,Tetragonal_High 4/mmm,<100>,1.00000000,0.00000000 +8,RC_rd1,422,Tetragonal_High 4/mmm,<100>,1.00000000,0.00000000 +8,RC_rd1,422,Tetragonal_High 4/mmm,<100>,0.00000000,0.70020754 +8,RC_rd1,422,Tetragonal_High 4/mmm,<100>,0.00000000,0.70020754 +8,RC_rd1,422,Tetragonal_High 4/mmm,<110>,0.56940030,0.53506126 +8,RC_rd1,422,Tetragonal_High 4/mmm,<110>,0.56940030,0.53506126 +8,RC_rd1,422,Tetragonal_High 4/mmm,<110>,-0.56940030,0.53506126 +8,RC_rd1,422,Tetragonal_High 4/mmm,<110>,-0.56940030,0.53506126 +8,RC_rd1,4,Tetragonal_Low 4/m,<001>,-0.00000000,-0.17632698 +8,RC_rd1,4,Tetragonal_Low 4/m,<001>,-0.00000000,-0.17632698 +8,RC_rd1,4,Tetragonal_Low 4/m,<100>,1.00000000,0.00000000 +8,RC_rd1,4,Tetragonal_Low 4/m,<100>,1.00000000,0.00000000 +8,RC_rd1,4,Tetragonal_Low 4/m,<100>,0.00000000,0.70020754 +8,RC_rd1,4,Tetragonal_Low 4/m,<100>,0.00000000,0.70020754 +8,RC_rd1,4,Tetragonal_Low 4/m,<110>,0.56940030,0.53506126 +8,RC_rd1,4,Tetragonal_Low 4/m,<110>,0.56940030,0.53506126 +8,RC_rd1,4,Tetragonal_Low 4/m,<110>,-0.56940030,0.53506126 +8,RC_rd1,4,Tetragonal_Low 4/m,<110>,-0.56940030,0.53506126 +8,RC_rd1,222,OrthoRhombic mmm,<001>,-0.00000000,-0.17632698 +8,RC_rd1,222,OrthoRhombic mmm,<001>,-0.00000000,-0.17632698 +8,RC_rd1,222,OrthoRhombic mmm,<100>,1.00000000,0.00000000 +8,RC_rd1,222,OrthoRhombic mmm,<100>,1.00000000,0.00000000 +8,RC_rd1,222,OrthoRhombic mmm,<010>,-0.00000000,0.70020754 +8,RC_rd1,222,OrthoRhombic mmm,<010>,-0.00000000,0.70020754 +8,RC_rd1,2,Monoclinic 2/m,<001>,-0.00000000,-0.17632698 +8,RC_rd1,2,Monoclinic 2/m,<001>,-0.00000000,-0.17632698 +8,RC_rd1,2,Monoclinic 2/m,<100>,1.00000000,0.00000000 +8,RC_rd1,2,Monoclinic 2/m,<100>,1.00000000,0.00000000 +8,RC_rd1,2,Monoclinic 2/m,<010>,-0.00000000,0.70020754 +8,RC_rd1,2,Monoclinic 2/m,<010>,-0.00000000,0.70020754 +8,RC_rd1,1,Triclinic -1,<001>,-0.00000000,-0.17632698 +8,RC_rd1,1,Triclinic -1,<001>,-0.00000000,-0.17632698 +8,RC_rd1,1,Triclinic -1,<100>,1.00000000,0.00000000 +8,RC_rd1,1,Triclinic -1,<100>,1.00000000,0.00000000 +8,RC_rd1,1,Triclinic -1,<010>,-0.00000000,0.70020754 +8,RC_rd1,1,Triclinic -1,<010>,-0.00000000,0.70020754 +9,RC_rd2,432,Cubic_High m-3m,<001>,0.00000000,-0.31529879 +9,RC_rd2,432,Cubic_High m-3m,<001>,0.00000000,-0.31529879 +9,RC_rd2,432,Cubic_High m-3m,<001>,1.00000000,0.00000000 +9,RC_rd2,432,Cubic_High m-3m,<001>,1.00000000,0.00000000 +9,RC_rd2,432,Cubic_High m-3m,<001>,-0.00000000,0.52056705 +9,RC_rd2,432,Cubic_High m-3m,<001>,-0.00000000,0.52056705 +9,RC_rd2,432,Cubic_High m-3m,<011>,-0.00000000,0.08748866 +9,RC_rd2,432,Cubic_High m-3m,<011>,-0.00000000,0.08748866 +9,RC_rd2,432,Cubic_High m-3m,<011>,0.44775472,-0.25682156 +9,RC_rd2,432,Cubic_High m-3m,<011>,0.44775472,-0.25682156 +9,RC_rd2,432,Cubic_High m-3m,<011>,0.50307125,0.41209184 +9,RC_rd2,432,Cubic_High m-3m,<011>,0.50307125,0.41209184 +9,RC_rd2,432,Cubic_High m-3m,<011>,-0.44775472,-0.25682156 +9,RC_rd2,432,Cubic_High m-3m,<011>,-0.44775472,-0.25682156 +9,RC_rd2,432,Cubic_High m-3m,<011>,-0.50307125,0.41209184 +9,RC_rd2,432,Cubic_High m-3m,<011>,-0.50307125,0.41209184 +9,RC_rd2,432,Cubic_High m-3m,<011>,-0.00000000,-0.83909963 +9,RC_rd2,432,Cubic_High m-3m,<011>,-0.00000000,-0.83909963 +9,RC_rd2,432,Cubic_High m-3m,<111>,0.32002260,0.07858975 +9,RC_rd2,432,Cubic_High m-3m,<111>,0.32002260,0.07858975 +9,RC_rd2,432,Cubic_High m-3m,<111>,-0.50565668,-0.70424245 +9,RC_rd2,432,Cubic_High m-3m,<111>,-0.50565668,-0.70424245 +9,RC_rd2,432,Cubic_High m-3m,<111>,-0.32002260,0.07858975 +9,RC_rd2,432,Cubic_High m-3m,<111>,-0.32002260,0.07858975 +9,RC_rd2,432,Cubic_High m-3m,<111>,0.50565668,-0.70424245 +9,RC_rd2,432,Cubic_High m-3m,<111>,0.50565668,-0.70424245 +9,RC_rd2,23,Cubic_Low m-3,<001>,0.00000000,-0.31529879 +9,RC_rd2,23,Cubic_Low m-3,<001>,0.00000000,-0.31529879 +9,RC_rd2,23,Cubic_Low m-3,<001>,1.00000000,0.00000000 +9,RC_rd2,23,Cubic_Low m-3,<001>,1.00000000,0.00000000 +9,RC_rd2,23,Cubic_Low m-3,<001>,-0.00000000,0.52056705 +9,RC_rd2,23,Cubic_Low m-3,<001>,-0.00000000,0.52056705 +9,RC_rd2,23,Cubic_Low m-3,<011>,-0.00000000,0.08748866 +9,RC_rd2,23,Cubic_Low m-3,<011>,-0.00000000,0.08748866 +9,RC_rd2,23,Cubic_Low m-3,<011>,0.44775472,-0.25682156 +9,RC_rd2,23,Cubic_Low m-3,<011>,0.44775472,-0.25682156 +9,RC_rd2,23,Cubic_Low m-3,<011>,0.50307125,0.41209184 +9,RC_rd2,23,Cubic_Low m-3,<011>,0.50307125,0.41209184 +9,RC_rd2,23,Cubic_Low m-3,<011>,0.00000000,-0.83909963 +9,RC_rd2,23,Cubic_Low m-3,<011>,0.00000000,-0.83909963 +9,RC_rd2,23,Cubic_Low m-3,<011>,-0.44775472,-0.25682156 +9,RC_rd2,23,Cubic_Low m-3,<011>,-0.44775472,-0.25682156 +9,RC_rd2,23,Cubic_Low m-3,<011>,-0.50307125,0.41209184 +9,RC_rd2,23,Cubic_Low m-3,<011>,-0.50307125,0.41209184 +9,RC_rd2,23,Cubic_Low m-3,<111>,0.32002260,0.07858975 +9,RC_rd2,23,Cubic_Low m-3,<111>,0.32002260,0.07858975 +9,RC_rd2,23,Cubic_Low m-3,<111>,-0.32002260,0.07858975 +9,RC_rd2,23,Cubic_Low m-3,<111>,-0.32002260,0.07858975 +9,RC_rd2,23,Cubic_Low m-3,<111>,0.50565668,-0.70424245 +9,RC_rd2,23,Cubic_Low m-3,<111>,0.50565668,-0.70424245 +9,RC_rd2,23,Cubic_Low m-3,<111>,-0.50565668,-0.70424245 +9,RC_rd2,23,Cubic_Low m-3,<111>,-0.50565668,-0.70424245 +9,RC_rd2,622,Hexagonal_High 6/mmm,<0001>,-0.00000000,-0.31529879 +9,RC_rd2,622,Hexagonal_High 6/mmm,<0001>,-0.00000000,-0.31529879 +9,RC_rd2,622,Hexagonal_High 6/mmm,<10-10>,1.00000000,0.00000000 +9,RC_rd2,622,Hexagonal_High 6/mmm,<10-10>,1.00000000,0.00000000 +9,RC_rd2,622,Hexagonal_High 6/mmm,<10-10>,-0.33406119,0.47397035 +9,RC_rd2,622,Hexagonal_High 6/mmm,<10-10>,-0.33406119,0.47397035 +9,RC_rd2,622,Hexagonal_High 6/mmm,<10-10>,0.33406119,0.47397035 +9,RC_rd2,622,Hexagonal_High 6/mmm,<10-10>,0.33406119,0.47397035 +9,RC_rd2,622,Hexagonal_High 6/mmm,<11-20>,-0.67301316,0.31829326 +9,RC_rd2,622,Hexagonal_High 6/mmm,<11-20>,-0.67301316,0.31829326 +9,RC_rd2,622,Hexagonal_High 6/mmm,<11-20>,0.67301316,0.31829326 +9,RC_rd2,622,Hexagonal_High 6/mmm,<11-20>,0.67301316,0.31829326 +9,RC_rd2,622,Hexagonal_High 6/mmm,<11-20>,-0.00000000,0.52056705 +9,RC_rd2,622,Hexagonal_High 6/mmm,<11-20>,-0.00000000,0.52056705 +9,RC_rd2,6,Hexagonal_Low 6/m,<0001>,-0.00000000,-0.31529879 +9,RC_rd2,6,Hexagonal_Low 6/m,<0001>,-0.00000000,-0.31529879 +9,RC_rd2,6,Hexagonal_Low 6/m,<10-10>,1.00000000,0.00000000 +9,RC_rd2,6,Hexagonal_Low 6/m,<10-10>,1.00000000,0.00000000 +9,RC_rd2,6,Hexagonal_Low 6/m,<10-10>,0.33406119,0.47397035 +9,RC_rd2,6,Hexagonal_Low 6/m,<10-10>,0.33406119,0.47397035 +9,RC_rd2,6,Hexagonal_Low 6/m,<10-10>,-0.33406119,0.47397035 +9,RC_rd2,6,Hexagonal_Low 6/m,<10-10>,-0.33406119,0.47397035 +9,RC_rd2,6,Hexagonal_Low 6/m,<11-20>,0.67301316,0.31829326 +9,RC_rd2,6,Hexagonal_Low 6/m,<11-20>,0.67301316,0.31829326 +9,RC_rd2,6,Hexagonal_Low 6/m,<11-20>,-0.00000000,0.52056705 +9,RC_rd2,6,Hexagonal_Low 6/m,<11-20>,-0.00000000,0.52056705 +9,RC_rd2,6,Hexagonal_Low 6/m,<11-20>,-0.67301316,0.31829326 +9,RC_rd2,6,Hexagonal_Low 6/m,<11-20>,-0.67301316,0.31829326 +9,RC_rd2,32,Trigonal_High -3m,<0001>,-0.00000000,-0.31529879 +9,RC_rd2,32,Trigonal_High -3m,<0001>,-0.00000000,-0.31529879 +9,RC_rd2,32,Trigonal_High -3m,<0-110>,0.33406119,0.47397035 +9,RC_rd2,32,Trigonal_High -3m,<0-110>,0.33406119,0.47397035 +9,RC_rd2,32,Trigonal_High -3m,<0-110>,1.00000000,0.00000000 +9,RC_rd2,32,Trigonal_High -3m,<0-110>,1.00000000,0.00000000 +9,RC_rd2,32,Trigonal_High -3m,<0-110>,-0.33406119,0.47397035 +9,RC_rd2,32,Trigonal_High -3m,<0-110>,-0.33406119,0.47397035 +9,RC_rd2,32,Trigonal_High -3m,<1-100>,-0.33406119,0.47397035 +9,RC_rd2,32,Trigonal_High -3m,<1-100>,-0.33406119,0.47397035 +9,RC_rd2,32,Trigonal_High -3m,<1-100>,1.00000000,0.00000000 +9,RC_rd2,32,Trigonal_High -3m,<1-100>,1.00000000,0.00000000 +9,RC_rd2,32,Trigonal_High -3m,<1-100>,0.33406119,0.47397035 +9,RC_rd2,32,Trigonal_High -3m,<1-100>,0.33406119,0.47397035 +9,RC_rd2,3,Trigonal_Low -3,<0001>,-0.00000000,-0.31529879 +9,RC_rd2,3,Trigonal_Low -3,<0001>,-0.00000000,-0.31529879 +9,RC_rd2,3,Trigonal_Low -3,<-1-120>,0.67301316,0.31829326 +9,RC_rd2,3,Trigonal_Low -3,<-1-120>,0.67301316,0.31829326 +9,RC_rd2,3,Trigonal_Low -3,<-1-120>,-0.67301316,0.31829326 +9,RC_rd2,3,Trigonal_Low -3,<-1-120>,-0.67301316,0.31829326 +9,RC_rd2,3,Trigonal_Low -3,<-1-120>,-0.00000000,0.52056705 +9,RC_rd2,3,Trigonal_Low -3,<-1-120>,-0.00000000,0.52056705 +9,RC_rd2,3,Trigonal_Low -3,<2-1-10>,-0.67301316,0.31829326 +9,RC_rd2,3,Trigonal_Low -3,<2-1-10>,-0.67301316,0.31829326 +9,RC_rd2,3,Trigonal_Low -3,<2-1-10>,-0.00000000,0.52056705 +9,RC_rd2,3,Trigonal_Low -3,<2-1-10>,-0.00000000,0.52056705 +9,RC_rd2,3,Trigonal_Low -3,<2-1-10>,0.67301316,0.31829326 +9,RC_rd2,3,Trigonal_Low -3,<2-1-10>,0.67301316,0.31829326 +9,RC_rd2,422,Tetragonal_High 4/mmm,<001>,0.00000000,-0.31529879 +9,RC_rd2,422,Tetragonal_High 4/mmm,<001>,0.00000000,-0.31529879 +9,RC_rd2,422,Tetragonal_High 4/mmm,<100>,1.00000000,0.00000000 +9,RC_rd2,422,Tetragonal_High 4/mmm,<100>,1.00000000,0.00000000 +9,RC_rd2,422,Tetragonal_High 4/mmm,<100>,-0.00000000,0.52056705 +9,RC_rd2,422,Tetragonal_High 4/mmm,<100>,-0.00000000,0.52056705 +9,RC_rd2,422,Tetragonal_High 4/mmm,<110>,0.50307125,0.41209184 +9,RC_rd2,422,Tetragonal_High 4/mmm,<110>,0.50307125,0.41209184 +9,RC_rd2,422,Tetragonal_High 4/mmm,<110>,-0.50307125,0.41209184 +9,RC_rd2,422,Tetragonal_High 4/mmm,<110>,-0.50307125,0.41209184 +9,RC_rd2,4,Tetragonal_Low 4/m,<001>,0.00000000,-0.31529879 +9,RC_rd2,4,Tetragonal_Low 4/m,<001>,0.00000000,-0.31529879 +9,RC_rd2,4,Tetragonal_Low 4/m,<100>,1.00000000,0.00000000 +9,RC_rd2,4,Tetragonal_Low 4/m,<100>,1.00000000,0.00000000 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+11,RC_nd2,2,Monoclinic 2/m,<010>,0.57357644,-0.81915204 +11,RC_nd2,1,Triclinic -1,<001>,-0.00000000,-0.00000000 +11,RC_nd2,1,Triclinic -1,<001>,-0.00000000,-0.00000000 +11,RC_nd2,1,Triclinic -1,<100>,0.81915204,0.57357644 +11,RC_nd2,1,Triclinic -1,<100>,-0.81915204,-0.57357644 +11,RC_nd2,1,Triclinic -1,<010>,-0.57357644,0.81915204 +11,RC_nd2,1,Triclinic -1,<010>,0.57357644,-0.81915204 diff --git a/Data/Pole_Figure_Validation/mtex_pole_figure_positions.m b/Data/Pole_Figure_Validation/mtex_pole_figure_positions.m new file mode 100644 index 00000000..5bdb9e26 --- /dev/null +++ b/Data/Pole_Figure_Validation/mtex_pole_figure_positions.m @@ -0,0 +1,209 @@ +% mtex_pole_figure_positions.m +% +% Companion to PoleFigurePositionTest.cpp — produces the same CSV schema +% from MTEX so the EbsdLib output can be checked against ground truth. +% +% For each ideal canonical orientation x each unique Laue class x each +% default plane family, this script: +% 1. Builds the orientation in MTEX with the matching crystal symmetry +% 2. Builds the corresponding Miller plane normal +% 3. Computes the symmetry orbit (sample-frame vector3d) +% 4. Stereographic-projects each direction onto the unit disk using +% the same antipodal-fold rule as EbsdLib's +% ComputeStereographicProjection (z<0 -> flip, then x/(1+z), y/(1+z)) +% 5. Emits one CSV row per pole +% +% CSV schema (matches PoleFigurePositionTest.cpp exactly): +% orient_id, orient_name, rotation_point_group, symmetry_name, +% plane_family, x, y +% +% Comparison is then a per-bucket nearest-neighbor match between +% mtex_pole_figure_positions.csv and ebsdlib_pole_figure_positions.csv. +% +% Usage: +% 1. Run this script in MATLAB (MTEX must be on the path; run +% `startup_mtex` first if needed). The companion shell wrapper +% run_mtex_pole_figure_positions.sh handles MTEX startup +% automatically. +% 2. The CSV is written into the same directory as this script +% (Data/Pole_Figure_Validation/). It is the committed golden against +% which PoleFigurePositionTest.cpp compares the EbsdLib output. + +scriptDir = fileparts(mfilename('fullpath')); +csvPath = fullfile(scriptDir, 'mtex_pole_figure_positions.csv'); + +% ----------------------------------------------------------------------------- +% Reference Bunge tuples in degrees -- mirror the C++ test exactly. +% ----------------------------------------------------------------------------- +canonical = { ... + 'Cube', 0.0, 0.0, 0.0 ; ... + 'Goss', 0.0, 45.0, 0.0 ; ... + 'Brass', 35.0, 45.0, 0.0 ; ... + 'Copper', 90.0, 35.0, 45.0 ; ... + 'S', 59.0, 37.0, 63.0 ; ... + 'S1', 55.0, 30.0, 65.0 ; ... + 'S2', 45.0, 35.0, 65.0 ; ... + 'R', 55.0, 75.0, 25.0 ; ... + 'RC_rd1', 0.0, 20.0, 0.0 ; ... + 'RC_rd2', 0.0, 35.0, 0.0 ; ... + 'RC_nd1', 20.0, 0.0, 0.0 ; ... + 'RC_nd2', 35.0, 0.0, 0.0 ; ... +}; + +% ----------------------------------------------------------------------------- +% Per-Laue-class mapping. Borrowed from compare_pole_figures_all_laue.m and +% kept in lockstep with EbsdLib's getDefaultPoleFigureNames() output. The +% label strings MUST match the C++ side exactly so the CSV bucket join +% works. +% +% rpg : EbsdLib rotation point group string (also the join key) +% symName : informational label, mirrors LaueOps::getSymmetryName() +% cs : MTEX crystalSymmetry instance +% h : 1x3 cell array of Miller index tuples (3- or 4-element) +% labels : 1x3 cell array of pole figure label strings (must match +% EbsdLib output verbatim, including angle brackets) +% ----------------------------------------------------------------------------- +laue = struct([]); + +laue(end+1).rpg = '432'; +laue(end).symName = 'Cubic_High m-3m'; +laue(end).cs = crystalSymmetry('m-3m'); +laue(end).h = {[0 0 1], [0 1 1], [1 1 1]}; +laue(end).labels = {'<001>', '<011>', '<111>'}; + +laue(end+1).rpg = '23'; +laue(end).symName = 'Cubic_Low m-3'; +laue(end).cs = crystalSymmetry('m-3'); +laue(end).h = {[0 0 1], [0 1 1], [1 1 1]}; +laue(end).labels = {'<001>', '<011>', '<111>'}; + +laue(end+1).rpg = '622'; +laue(end).symName = 'Hexagonal_High 6/mmm'; +laue(end).cs = crystalSymmetry('6/mmm', [1 1 1.6], 'X||a*'); +laue(end).h = {[0 0 0 1], [1 0 -1 0], [1 1 -2 0]}; +laue(end).labels = {'<0001>', '<10-10>', '<11-20>'}; + +laue(end+1).rpg = '6'; +laue(end).symName = 'Hexagonal_Low 6/m'; +laue(end).cs = crystalSymmetry('6/m', [1 1 1.6], 'X||a*'); +laue(end).h = {[0 0 0 1], [1 0 -1 0], [1 1 -2 0]}; +laue(end).labels = {'<0001>', '<10-10>', '<11-20>'}; + +laue(end+1).rpg = '32'; +laue(end).symName = 'Trigonal_High -3m'; +laue(end).cs = crystalSymmetry('-3m', [1 1 1.6], 'X||a*'); +laue(end).h = {[0 0 0 1], [0 -1 1 0], [1 -1 0 0]}; +laue(end).labels = {'<0001>', '<0-110>', '<1-100>'}; + +laue(end+1).rpg = '3'; +laue(end).symName = 'Trigonal_Low -3'; +laue(end).cs = crystalSymmetry('-3', [1 1 1.6], 'X||a*'); +laue(end).h = {[0 0 0 1], [-1 -1 2 0], [2 -1 -1 0]}; +laue(end).labels = {'<0001>', '<-1-120>', '<2-1-10>'}; + +laue(end+1).rpg = '422'; +laue(end).symName = 'Tetragonal_High 4/mmm'; +laue(end).cs = crystalSymmetry('4/mmm'); +laue(end).h = {[0 0 1], [1 0 0], [1 1 0]}; +laue(end).labels = {'<001>', '<100>', '<110>'}; + +laue(end+1).rpg = '4'; +laue(end).symName = 'Tetragonal_Low 4/m'; +laue(end).cs = crystalSymmetry('4/m'); +laue(end).h = {[0 0 1], [1 0 0], [1 1 0]}; +laue(end).labels = {'<001>', '<100>', '<110>'}; + +laue(end+1).rpg = '222'; +laue(end).symName = 'OrthoRhombic mmm'; +laue(end).cs = crystalSymmetry('mmm'); +laue(end).h = {[0 0 1], [1 0 0], [0 1 0]}; +laue(end).labels = {'<001>', '<100>', '<010>'}; + +laue(end+1).rpg = '2'; +laue(end).symName = 'Monoclinic 2/m'; +laue(end).cs = crystalSymmetry('2/m'); +laue(end).h = {[0 0 1], [1 0 0], [0 1 0]}; +laue(end).labels = {'<001>', '<100>', '<010>'}; + +laue(end+1).rpg = '1'; +laue(end).symName = 'Triclinic -1'; +laue(end).cs = crystalSymmetry('-1'); +laue(end).h = {[0 0 1], [1 0 0], [0 1 0]}; +laue(end).labels = {'<001>', '<100>', '<010>'}; + +% ----------------------------------------------------------------------------- +% Open CSV and write header +% ----------------------------------------------------------------------------- +fid = fopen(csvPath, 'w'); +if fid < 0 + error('Could not open output CSV: %s', csvPath); +end +fprintf(fid, 'orient_id,orient_name,rotation_point_group,symmetry_name,plane_family,x,y\n'); + +ss = specimenSymmetry('1'); + +% Iterate orientations x Laue classes x plane families +for oi = 1:size(canonical, 1) + name = canonical{oi, 1}; + phi1 = canonical{oi, 2} * degree; + Phi = canonical{oi, 3} * degree; + phi2 = canonical{oi, 4} * degree; + orientId = oi - 1; % 0-based to match the C++ test + + for li = 1:numel(laue) + info = laue(li); + cs = info.cs; + ori = orientation.byEuler(phi1, Phi, phi2, cs, ss); + + for fi = 1:3 + idx = info.h{fi}; + if numel(idx) == 4 + m = Miller(idx(1), idx(2), idx(3), idx(4), cs); + else + m = Miller(idx(1), idx(2), idx(3), cs); + end + + % Symmetry orbit in crystal frame, then map to sample frame. + % MTEX's symmetrise() returns |cs| entries -- one per symmetry + % operation, including stabilizer ops that fix the pole. EbsdLib + % returns the unique orbit (size = |cs| / |stabilizer|), so we + % dedupe below. + % + % MTEX's Miller cartesian is in *lattice units* -- e.g. Miller([1 1 1]) + % has length sqrt(3), and Miller([0 0 0 1]) for hex with c=1.6 has + % length 1.6. EbsdLib explicitly normalizes its hardcoded direction + % vectors before projection, so we must normalize here too. + mSym = symmetrise(m, cs); + vSample = ori * mSym; % vector3d array, length = |cs| + xs = vSample.x; ys = vSample.y; zs = vSample.z; + mag = sqrt(xs.^2 + ys.^2 + zs.^2); + xs = xs ./ mag; ys = ys ./ mag; zs = zs ./ mag; + + % Dedupe in 3D after normalization (round to 1e-8 to absorb FP noise). + xyzKey = round([xs(:), ys(:), zs(:)] * 1e8) / 1e8; + [~, ia] = unique(xyzKey, 'rows', 'stable'); + xs = xs(ia); ys = ys(ia); zs = zs(ia); + + for k = 1:numel(xs) + x = xs(k); y = ys(k); z = zs(k); + + % Match EbsdLib's antipodal-fold rule + if z < 0.0 + x = -x; y = -y; z = -z; + end + + % Stereographic projection from the south pole + px = x / (1.0 + z); + py = y / (1.0 + z); + + fprintf(fid, '%d,%s,%s,%s,%s,%.8f,%.8f\n', ... + orientId, name, info.rpg, info.symName, info.labels{fi}, px, py); + end + end + end +end + +fclose(fid); +fprintf('Wrote %s\n', csvPath); +fprintf('This is the committed golden -- PoleFigurePositionTest.cpp loads it\n'); +fprintf('and runs the comparison automatically. See ReadMe.md in this directory.\n'); diff --git a/Data/Pole_Figure_Validation/pole_figure_data.d3dpipeline b/Data/Pole_Figure_Validation/pole_figure_data.d3dpipeline new file mode 100644 index 00000000..ab634856 --- /dev/null +++ b/Data/Pole_Figure_Validation/pole_figure_data.d3dpipeline @@ -0,0 +1,776 @@ +{ + "isDisabled": false, + "name": "pole_figure_data.d3dpipeline", + "pinnedParams": [], + "pipeline": [ + { + "args": { + "cell_ensemble_attribute_matrix_path": { + "value": "Ensemble Attribute Matrix", + "version": 1 + }, + "crystal_structure_index": { + "value": 1, + "version": 1 + }, + "mode_1_euler_angle": { + "value": [ + 35.0, + 45.0, + 0.0 + ], + "version": 1 + }, + "mode_1_misorientation": { + "value": 2.5, + "version": 1 + }, + "number_of_samples": { + "value": 2, + "version": 1 + }, + "offset_grid": { + "value": false, + "version": 1 + }, + "output_euler_angles_path": { + "value": "Brass", + "version": 1 + }, + "parameters_version": 1, + "sample_mode_index": { + "value": 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@@ -0,0 +1,20 @@ +#!/usr/bin/env zsh +# Run mtex_ang_to_pole_figures.m headlessly with MTEX initialized. +# Edit the input/output paths inside mtex_ang_to_pole_figures.m for each +# new dataset, then invoke this script. + +set -euo pipefail + +MATLAB_BIN="/Applications/MATLAB_R2025b.app/bin/matlab" +MTEX_STARTUP="/Users/mjackson/Workspace7/mtex-6.1.0/startup_mtex.m" +SCRIPT_DIR="${0:A:h}" +PF_SCRIPT="${SCRIPT_DIR}/mtex_ang_to_pole_figures.m" + +for f in "$MATLAB_BIN" "$MTEX_STARTUP" "$PF_SCRIPT"; do + if [[ ! -e "$f" ]]; then + print -u2 "Error: required file not found: $f" + exit 1 + fi +done + +"$MATLAB_BIN" -batch "run('${MTEX_STARTUP}'); run('${PF_SCRIPT}');" diff --git a/Data/Pole_Figure_Validation/run_mtex_pole_figure_positions.sh b/Data/Pole_Figure_Validation/run_mtex_pole_figure_positions.sh new file mode 100755 index 00000000..2d5a7410 --- /dev/null +++ b/Data/Pole_Figure_Validation/run_mtex_pole_figure_positions.sh @@ -0,0 +1,18 @@ +#!/usr/bin/env zsh +# Run mtex_pole_figure_positions.m headlessly with MTEX initialized. + +set -euo pipefail + +MATLAB_BIN="/Applications/MATLAB_R2025b.app/bin/matlab" +MTEX_STARTUP="/Users/mjackson/Workspace7/mtex-6.1.0/startup_mtex.m" +SCRIPT_DIR="${0:A:h}" +PF_SCRIPT="${SCRIPT_DIR}/mtex_pole_figure_positions.m" + +for f in "$MATLAB_BIN" "$MTEX_STARTUP" "$PF_SCRIPT"; do + if [[ ! -e "$f" ]]; then + print -u2 "Error: required file not found: $f" + exit 1 + fi +done + +"$MATLAB_BIN" -batch "run('${MTEX_STARTUP}'); run('${PF_SCRIPT}');" diff --git a/Data/ipf_color_tests/AllLaueClasses_RandO.ang b/Data/ipf_color_tests/AllLaueClasses_RandO.ang new file mode 100644 index 00000000..93da848e --- /dev/null +++ b/Data/ipf_color_tests/AllLaueClasses_RandO.ang @@ -0,0 +1,9759 @@ +# HEADER: Start +# TEM_PIXperUM 1.000000 +# x-star 0.000000 +# y-star 0.000000 +# z-star 0.000000 +# WorkingDistance 0.000000 +# SampleTiltAngle 70.000000 +# +# Phase 12 +# MaterialName triclinic +# Formula None +# Info +# Symmetry 1 +# 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diff --git a/Data/ipf_color_tests/EDAX_PUCM_IPF.bmp b/Data/ipf_color_tests/EDAX_PUCM_IPF.bmp new file mode 100644 index 00000000..c542d485 Binary files /dev/null and b/Data/ipf_color_tests/EDAX_PUCM_IPF.bmp differ diff --git a/Data/ipf_color_tests/EDAX_TSL_IPF.bmp b/Data/ipf_color_tests/EDAX_TSL_IPF.bmp new file mode 100644 index 00000000..6a3f7d51 Binary files /dev/null and b/Data/ipf_color_tests/EDAX_TSL_IPF.bmp differ diff --git a/Docs/Index.md b/Docs/Index.md index d644cc2f..8a4fba59 100644 --- a/Docs/Index.md +++ b/Docs/Index.md @@ -6,3 +6,15 @@ EbsdLib is primarily used in the [DREAM3D](https://www.dream3d.io) family of app The PDF is courtesy of Dr. Anthony Rollett from Carnegie Mellon University. The original URL is [http://pajarito.materials.cmu.edu/lectures/L3-OD_symmetry-21Jan16-slide_50-operators.pdf](http://pajarito.materials.cmu.edu/lectures/L3-OD_symmetry-21Jan16-slide_50-operators.pdf) + +## Hexagonal Cartesian Conventions: X‖a vs X‖a* + +EbsdLib v3 aligned its hexagonal and trigonal direction conventions to `X‖a*`, matching +MTEX and Oxford Instruments / HKL acquisition systems. (EDAX/TSL/OIM Analysis use the +other convention, `X‖a`.) The 30° rotation between the two conventions is what caused +the original `(10-10)` and `(2-1-10)` pole-figure mismatches before the v3 changes. + +![X parallel a-star convention](x_parallel_a_star_convention.svg) + +Position-space validation across all 11 Laue classes lives in +[`Data/Pole_Figure_Validation/`](../Data/Pole_Figure_Validation/ReadMe.md). diff --git a/Docs/superpowers/plans/2026-03-23-annotated-ipf-density.md b/Docs/superpowers/plans/2026-03-23-annotated-ipf-density.md new file mode 100644 index 00000000..bbadb3a3 --- /dev/null +++ b/Docs/superpowers/plans/2026-03-23-annotated-ipf-density.md @@ -0,0 +1,1065 @@ +# Annotated Inverse Pole Figure Density Images — Implementation Plan + +> **For agentic workers:** REQUIRED SUB-SKILL: Use superpowers:subagent-driven-development (recommended) or superpowers:executing-plans to implement this plan task-by-task. Steps use checkbox (`- [ ]`) syntax for tracking. + +**Goal:** Add proper labeling (title, Miller index annotations, color bar) to Inverse Pole Figure density images by refactoring the existing `generateIPFTriangleLegend` scaffolding into shared code that both the IPF legend and IPF density features can use. + +**Architecture:** Extract the ~40 lines of identical canvas setup / teardown code from all 11 `generateIPFTriangleLegend()` implementations into a shared non-virtual base-class method. Promote each subclass's `DrawFullCircleAnnotations()` free function to a virtual method so the base class can call it. Both `generateIPFTriangleLegend()` and a new `generateAnnotatedIPFDensity()` method call the same shared annotation pipeline, differing only in how the triangle image is produced and whether a color bar is added. + +**Tech Stack:** C++20, canvas_ity (2D rendering), EbsdLib LaueOps class hierarchy, EbsdDataArray + +--- + +## File Map + +### Files to Modify + +| File | Change | +|------|--------| +| `Source/EbsdLib/LaueOps/LaueOps.h` | Add `drawIPFAnnotations()` pure virtual declaration. Add `annotateIPFImage()` protected non-virtual helper. Add `adjustFigureOrigin()` virtual method. Add `generateAnnotatedIPFDensity()` public method declaration. | +| `Source/EbsdLib/LaueOps/LaueOps.cpp` | Implement `annotateIPFImage()` (shared scaffolding). Implement `generateAnnotatedIPFDensity()` (density pipeline + annotation + color bar). | +| `Source/EbsdLib/LaueOps/CubicOps.h` | Declare `drawIPFAnnotations()` and `adjustFigureOrigin()` overrides. | +| `Source/EbsdLib/LaueOps/CubicOps.cpp` | Move `DrawFullCircleAnnotations` body into `drawIPFAnnotations()` override. Refactor `generateIPFTriangleLegend()` to call `annotateIPFImage()`. | +| `Source/EbsdLib/LaueOps/CubicLowOps.h` | Same as CubicOps.h | +| `Source/EbsdLib/LaueOps/CubicLowOps.cpp` | Same pattern as CubicOps.cpp | +| `Source/EbsdLib/LaueOps/HexagonalOps.h` | Same as CubicOps.h | +| `Source/EbsdLib/LaueOps/HexagonalOps.cpp` | Same pattern as CubicOps.cpp | +| `Source/EbsdLib/LaueOps/HexagonalLowOps.h` | Same as CubicOps.h | +| `Source/EbsdLib/LaueOps/HexagonalLowOps.cpp` | Same pattern as CubicOps.cpp | +| `Source/EbsdLib/LaueOps/TrigonalOps.h` | Same as CubicOps.h | +| `Source/EbsdLib/LaueOps/TrigonalOps.cpp` | Same pattern as CubicOps.cpp | +| `Source/EbsdLib/LaueOps/TrigonalLowOps.h` | Same as CubicOps.h | +| `Source/EbsdLib/LaueOps/TrigonalLowOps.cpp` | Same pattern as CubicOps.cpp | +| `Source/EbsdLib/LaueOps/TetragonalOps.h` | Same as CubicOps.h | +| `Source/EbsdLib/LaueOps/TetragonalOps.cpp` | Same pattern as CubicOps.cpp | +| `Source/EbsdLib/LaueOps/TetragonalLowOps.h` | Same as CubicOps.h | +| `Source/EbsdLib/LaueOps/TetragonalLowOps.cpp` | Same pattern as CubicOps.cpp | +| `Source/EbsdLib/LaueOps/OrthoRhombicOps.h` | Same as CubicOps.h | +| `Source/EbsdLib/LaueOps/OrthoRhombicOps.cpp` | Same pattern as CubicOps.cpp | +| `Source/EbsdLib/LaueOps/MonoclinicOps.h` | Same as CubicOps.h | +| `Source/EbsdLib/LaueOps/MonoclinicOps.cpp` | Same pattern as CubicOps.cpp | +| `Source/EbsdLib/LaueOps/TriclinicOps.h` | Same as CubicOps.h | +| `Source/EbsdLib/LaueOps/TriclinicOps.cpp` | Same pattern as CubicOps.cpp | +| `Source/Apps/generate_ipf_from_file.cpp` | Update to call `generateAnnotatedIPFDensity()` instead of raw `generateInversePoleFigure()`. | +| `Source/Apps/generate_ipf_density.cpp` | Update to call `generateAnnotatedIPFDensity()` instead of raw `generateInversePoleFigure()`. | + +### Files to Read (reference only, no changes) + +| File | Why | +|------|-----| +| `Source/EbsdLib/Utilities/CanvasUtilities.hpp` | Contains `WriteText`, `DrawLine`, `MirrorImage`, `ConvertColorOrder`, `RemoveAlphaChannel`, `CropRGBImage` | +| `Source/EbsdLib/Utilities/Fonts.hpp` | Contains `GetLatoBold()`, `GetLatoRegular()` | +| `Source/EbsdLib/Utilities/InversePoleFigureUtilities.h` | Contains `InversePoleFigureConfiguration_t`, `computeIPFDirections`, `computeIPFIntensity`, `createIPFColorImage` | +| `Source/EbsdLib/Utilities/ColorTable.h` | Color table for color bar rendering | +| `Source/EbsdLib/Utilities/TiffWriter.h` | Writing TIFF output from apps | + +--- + +## Background: Current Architecture + +### generateIPFTriangleLegend() — Current flow (duplicated 11 times) + +Each of the 11 LaueOps subclasses has an identical ~90-line `generateIPFTriangleLegend()` that: + +1. Computes margins, legend dimensions, figureOrigin (2-3 lines **vary per subclass**) +2. Calls `CreateIPFLegend(this, legendHeight, generateEntirePlane)` — file-scoped free function (**varies per subclass** — different SST geometry) +3. Calls `ConvertColorOrder()` + `MirrorImage()` — **identical** +4. Creates canvas, fills white background, sets up fonts — **identical** (~20 lines) +5. Draws legend image onto canvas — **identical** +6. Draws title — **identical** +7. Calls `DrawFullCircleAnnotations()` — file-scoped free function (**varies per subclass** — different Miller indices and positions) +8. Extracts RGBA, removes alpha — **identical** + +Only steps 1, 2, and 7 vary. Steps 3-6 and 8 are copy-pasted across all 11 files. + +### generateInversePoleFigure() — Current flow (single implementation in base class) + +A non-virtual method in `LaueOps.cpp` that: +1. Computes IPF directions for 3 sample directions +2. Computes intensity via Lambert projection +3. Finds global min/max across all 3 images +4. Creates RGBA color images (colored SST, white outside) + +Returns raw ARGB images — **no annotations, no title, no labels, no color bar**. + +--- + +## Design: Refactored Architecture + +### New virtual methods on LaueOps + +```cpp +// In LaueOps.h: + +/** + * @brief Per-subclass hook that draws Miller index labels and SST boundary + * annotations onto a canvas_ity canvas. Replaces the file-scoped + * DrawFullCircleAnnotations() free functions. + */ +virtual void drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, + float fontPtSize, const std::vector& margins, + std::array figureOrigin, + std::array figureCenter, + bool drawFullCircle) const = 0; + +/** + * @brief Per-subclass hook that returns the figureOrigin adjustment + * when rendering the SST-only view (generateEntirePlane == false). + * Default returns the base figureOrigin unchanged. + */ +virtual std::array adjustFigureOrigin( + std::array figureOrigin, + int legendWidth, int legendHeight, + const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const; +``` + +### New shared scaffolding method (non-virtual, protected) + +```cpp +/** + * @brief Shared canvas scaffolding used by both generateIPFTriangleLegend() + * and generateAnnotatedIPFDensity(). Takes a pre-rendered triangle image + * (ARGB, square), annotates it with title + per-subclass Miller index labels, + * and returns the final RGB image. + */ +UInt8ArrayType::Pointer annotateIPFImage( + UInt8ArrayType::Pointer triangleImage, + int imageDim, + int canvasDim, + const std::string& title, + bool generateEntirePlane) const; +``` + +### New public method for annotated density + +```cpp +/** + * @brief Generates 3 annotated inverse pole figure density images with + * title, Miller index labels, and MRD color bar. + */ +std::vector generateAnnotatedIPFDensity( + InversePoleFigureConfiguration_t& config) const; +``` + +### Data flow after refactor + +**IPF Legend:** +``` +CreateIPFLegend() [per-subclass, existing] + → annotateIPFImage() [shared scaffolding, NEW] + → drawIPFAnnotations() [per-subclass virtual, promoted from free function] + → return annotated image +``` + +**IPF Density:** +``` +generateInversePoleFigure() [existing, produces raw ARGB images] + → annotateIPFImage() [shared scaffolding, same as legend] + → drawIPFAnnotations() [per-subclass virtual, same as legend] + → drawColorBar() [shared, NEW, density-specific] + → return annotated images +``` + +--- + +## Tasks + +### Task 1: Add new virtual methods to LaueOps.h + +**Files:** +- Modify: `Source/EbsdLib/LaueOps/LaueOps.h:328` (near existing `generateIPFTriangleLegend` declaration) + +- [ ] **Step 1: Add the `#include` for canvas_ity in LaueOps.h** + +Add near the top of LaueOps.h with other includes: +```cpp +#include +``` + +Note: canvas_ity.hpp is already a public dependency of EbsdLib (included in CanvasUtilities.hpp, installed to include/EbsdLib). Check that it's not already included; if not, add it. + +- [ ] **Step 2: Add the three new method declarations** + +After the existing `generateIPFTriangleLegend` declaration (line 328), add: + +```cpp + /** + * @brief Per-subclass hook that draws Miller index labels and SST boundary + * annotations onto a canvas. Called by annotateIPFImage(). + */ + virtual void drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, + float fontPtSize, const std::vector& margins, + std::array figureOrigin, + std::array figureCenter, + bool drawFullCircle) const = 0; + + /** + * @brief Per-subclass hook that adjusts the figureOrigin when rendering + * SST-only view. Each subclass overrides to position its triangle shape + * correctly within the canvas. Default returns figureOrigin unchanged. + */ + virtual std::array adjustFigureOrigin( + std::array figureOrigin, + int legendWidth, int legendHeight, + const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const; + + /** + * @brief Generates 3 annotated inverse pole figure density images with + * title, Miller index labels, and MRD color bar. + * @param config Configuration struct; imageWidth must equal imageHeight (square images required) + * @param outMinMax Optional output for the global [min, max] intensity values + */ + std::vector generateAnnotatedIPFDensity( + InversePoleFigureConfiguration_t& config, + std::pair* outMinMax = nullptr) const; + +protected: + /** + * @brief Shared annotation scaffolding. Takes a pre-rendered ARGB triangle + * image, creates a canvas with white background, draws the image, adds + * title and per-subclass annotations, returns final RGB image. + * @param triangleImage Pre-rendered ARGB image (square, imageDim x imageDim) + * @param imageDim Pixel dimension of the triangle image (square) + * @param canvasDim Pixel dimension of the output canvas (square) + * @param title Text to draw as the title + * @param generateEntirePlane true = full circle view, false = SST only + * @return RGB image (canvasDim x canvasDim, 3 components) + */ + UInt8ArrayType::Pointer annotateIPFImage( + UInt8ArrayType::Pointer triangleImage, + int imageDim, + int canvasDim, + const std::string& title, + bool generateEntirePlane) const; +``` + +Note: The `protected:` label is needed so subclasses can call `annotateIPFImage()`. Check the existing access specifiers in LaueOps.h and place appropriately. The existing class may not have a `protected:` section — if so, add one before the new method. The `public:` methods (`drawIPFAnnotations`, `adjustFigureOrigin`, `generateAnnotatedIPFDensity`) go in the existing `public:` section. + +- [ ] **Step 3: Build to verify the header compiles** + +Run: +```bash +cd /Users/mjackson/Workspace1/DREAM3D-Build/EbsdLib-Release && cmake --build . --target EbsdLib 2>&1 | tail -5 +``` +Expected: Linker errors about undefined references to the new methods (that's fine — implementations come in later tasks). If there are compiler errors, fix them first. + +- [ ] **Step 4: Commit** + +```bash +git add Source/EbsdLib/LaueOps/LaueOps.h +git commit -m "ENH: Add virtual method declarations for shared IPF annotation pipeline" +``` + +--- + +### Task 2: Implement `annotateIPFImage()` and `adjustFigureOrigin()` in LaueOps.cpp + +**Files:** +- Modify: `Source/EbsdLib/LaueOps/LaueOps.cpp` (after existing `generateInversePoleFigure`) + +- [ ] **Step 1: Add includes to LaueOps.cpp** + +Add these includes at the top of LaueOps.cpp if not already present: +```cpp +#include "EbsdLib/Utilities/CanvasUtilities.hpp" +#include "EbsdLib/Utilities/Fonts.hpp" +#include +``` + +- [ ] **Step 2: Implement the default `adjustFigureOrigin()`** + +Add after `generateInversePoleFigure()`: +```cpp +std::array LaueOps::adjustFigureOrigin( + std::array figureOrigin, + int legendWidth, int legendHeight, + const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const +{ + return figureOrigin; +} +``` + +This default implementation returns the origin unchanged. Subclasses with SST positioning needs will override it. + +- [ ] **Step 3: Implement `annotateIPFImage()`** + +This is the shared scaffolding extracted from the 11 copies of `generateIPFTriangleLegend()`. Add after `adjustFigureOrigin()`: + +```cpp +UInt8ArrayType::Pointer LaueOps::annotateIPFImage( + UInt8ArrayType::Pointer triangleImage, + int imageDim, + int canvasDim, + const std::string& title, + bool generateEntirePlane) const +{ + // Compute layout + const float fontPtSize = static_cast(canvasDim) / 24.0f; + const std::vector margins = { + fontPtSize * 3, // Top + static_cast(canvasDim / 7.0f), // Right + fontPtSize * 2, // Bottom + static_cast(canvasDim / 7.0f) // Left + }; + + int legendHeight = canvasDim - static_cast(margins[0]) - static_cast(margins[2]); + int legendWidth = canvasDim - static_cast(margins[1]) - static_cast(margins[3]); + + if(legendHeight > legendWidth) + { + legendHeight = legendWidth; + } + else + { + legendWidth = legendHeight; + } + + int halfWidth = legendWidth / 2; + int halfHeight = legendHeight / 2; + + // Compute figure origin — subclass may override for SST positioning + std::array figureOrigin = {margins[3], margins[0] * 1.33F}; + figureOrigin = adjustFigureOrigin(figureOrigin, legendWidth, legendHeight, margins, fontPtSize, generateEntirePlane); + + std::array figureCenter = {figureOrigin[0] + halfWidth, figureOrigin[1] + halfHeight}; + + // Scale the triangle image to legend dimensions if needed + // The input image is imageDim x imageDim; we need legendHeight x legendHeight + // For now we assume the caller provides an image at the correct size. + // Convert from ARGB to RGBA for canvas_ity + ebsdlib::UInt8ArrayType::Pointer image = ebsdlib::ConvertColorOrder(triangleImage.get(), imageDim); + // Mirror across X axis (image was drawn with +Y pointing down) + image = ebsdlib::MirrorImage(image.get(), imageDim); + + // Create canvas + canvas_ity::canvas context(canvasDim, canvasDim); + + std::vector latoBold = ebsdlib::fonts::GetLatoBold(); + std::vector latoRegular = ebsdlib::fonts::GetLatoRegular(); + context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize); + context.set_color(canvas_ity::fill_style, 0.0f, 0.0f, 0.0f, 1.0f); + context.text_baseline = canvas_ity::alphabetic; + + // Fill background with white + context.move_to(0.0f, 0.0f); + context.line_to(static_cast(canvasDim), 0.0f); + context.line_to(static_cast(canvasDim), static_cast(canvasDim)); + context.line_to(0.0f, static_cast(canvasDim)); + context.line_to(0.0f, 0.0f); + context.close_path(); + context.set_color(canvas_ity::fill_style, 1.0f, 1.0f, 1.0f, 1.0f); + context.fill(); + + // Draw the triangle image onto the canvas + context.draw_image(image->getPointer(0), imageDim, imageDim, + imageDim * image->getNumberOfComponents(), + figureOrigin[0], figureOrigin[1], + static_cast(legendWidth), + static_cast(legendHeight)); + + // Draw title + context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize * 1.5); + ebsdlib::WriteText(context, title, {margins[0], static_cast(fontPtSize * 1.5)}, fontPtSize * 1.5); + + // Draw per-subclass annotations (Miller indices, SST boundary lines) + context.set_font(latoRegular.data(), static_cast(latoRegular.size()), fontPtSize); + drawIPFAnnotations(context, canvasDim, fontPtSize, margins, figureOrigin, figureCenter, generateEntirePlane); + + // Extract rendered pixels and remove alpha channel + ebsdlib::UInt8ArrayType::Pointer rgbaCanvasImage = ebsdlib::UInt8ArrayType::CreateArray( + canvasDim * canvasDim, {4ULL}, "Annotated IPF", true); + context.get_image_data(rgbaCanvasImage->getPointer(0), canvasDim, canvasDim, canvasDim * 4, 0, 0); + + return ebsdlib::RemoveAlphaChannel(rgbaCanvasImage.get()); +} +``` + +- [ ] **Step 4: Build to check for compilation errors** + +Run: +```bash +cd /Users/mjackson/Workspace1/DREAM3D-Build/EbsdLib-Release && cmake --build . --target EbsdLib 2>&1 | tail -20 +``` +Expected: Linker errors for the pure virtual `drawIPFAnnotations` in the subclasses (they don't implement it yet). That's expected. + +- [ ] **Step 5: Commit** + +```bash +git add Source/EbsdLib/LaueOps/LaueOps.cpp +git commit -m "ENH: Implement shared annotateIPFImage() scaffolding in LaueOps base class" +``` + +--- + +### Task 3: Refactor CubicOps — promote DrawFullCircleAnnotations to virtual override + +This task establishes the pattern for all 11 subclasses. Do CubicOps first, verify it works, then apply the same pattern to the remaining 10. + +**Files:** +- Modify: `Source/EbsdLib/LaueOps/CubicOps.h` +- Modify: `Source/EbsdLib/LaueOps/CubicOps.cpp` + +- [ ] **Step 1: Add virtual method declarations to CubicOps.h** + +Add near the existing `generateIPFTriangleLegend` declaration: +```cpp + void drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, + float fontPtSize, std::vector margins, + std::array figureOrigin, + std::array figureCenter, + bool drawFullCircle) const override; + + std::array adjustFigureOrigin( + std::array figureOrigin, + int legendWidth, int legendHeight, + const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const override; +``` + +Also add `#include ` if not already present. Check the existing includes — CubicOps.cpp includes it but CubicOps.h may not. + +- [ ] **Step 2: Implement `adjustFigureOrigin()` override in CubicOps.cpp** + +CubicOps adjusts only `figureOrigin[1]` when `generateEntirePlane == false`: + +```cpp +std::array CubicOps::adjustFigureOrigin( + std::array figureOrigin, + int legendWidth, int legendHeight, + const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const +{ + if(!generateEntirePlane) + { + figureOrigin[1] = 0.0F + fontPtSize * 2.0F; + } + return figureOrigin; +} +``` + +- [ ] **Step 3: Convert DrawFullCircleAnnotations to `drawIPFAnnotations()` override** + +Rename the existing file-scoped `DrawFullCircleAnnotations()` function in CubicOps.cpp to the virtual override `CubicOps::drawIPFAnnotations()`. The function body stays identical — only the function signature changes: + +Before: +```cpp +void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, std::vector margins, std::array figureOrigin, std::array figureCenter, + bool drawFullCircle) +``` + +After: +```cpp +void CubicOps::drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, std::vector margins, std::array figureOrigin, std::array figureCenter, + bool drawFullCircle) const +``` + +**Important:** CubicOps has special handling — when `drawFullCircle == false`, it adjusts `figureCenter` before drawing labels (see lines 2153 in current code). This logic is already inside `DrawFullCircleAnnotations` itself in CubicOps. Verify by reading the function body that the figureCenter adjustment is handled internally. If the adjustment is done OUTSIDE the function (in `generateIPFTriangleLegend` before calling it), then move that logic INTO the new `drawIPFAnnotations` override: + +```cpp +// If CubicOps did this in generateIPFTriangleLegend: +// figureCenter = {figureOrigin[0], figureOrigin[1] + legendHeight}; +// Then add it at the top of drawIPFAnnotations: +if(!drawFullCircle) +{ + figureCenter = {figureOrigin[0], figureOrigin[1] + static_cast(/* legendHeight */)}; +} +``` + +Note: The `legendHeight` value isn't directly available in `drawIPFAnnotations`. However, looking at the existing code, `figureCenter` is computed from `figureOrigin + halfWidth/halfHeight`, which means the caller (annotateIPFImage) already computes it. For CubicOps, when `!drawFullCircle`, it overrides figureCenter to `{figureOrigin[0], figureOrigin[1] + legendHeight}`. We can compute this from the available parameters: `legendHeight = canvasDim - margins[0] - margins[2]` (clamped to square). Add this computation at the top of the override if needed. + +- [ ] **Step 4: Refactor `generateIPFTriangleLegend()` to use `annotateIPFImage()`** + +Replace the body of `CubicOps::generateIPFTriangleLegend()` with: + +```cpp +ebsdlib::UInt8ArrayType::Pointer CubicOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane) const +{ + // Compute legend dimensions (same formula as annotateIPFImage uses) + const float fontPtSize = static_cast(canvasDim) / 24.0f; + int legendHeight = canvasDim - static_cast(fontPtSize * 3) - static_cast(fontPtSize * 2); + int legendWidth = canvasDim - static_cast(canvasDim / 7.0f) * 2; + if(legendHeight > legendWidth) + { + legendHeight = legendWidth; + } + else + { + legendWidth = legendHeight; + } + + // Generate the colored SST triangle image (ARGB) + ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane); + + // Annotate with title and Miller index labels + return annotateIPFImage(image, legendHeight, canvasDim, getSymmetryName(), generateEntirePlane); +} +``` + +- [ ] **Step 5: Build and run the generate_ipf_legends app to verify output matches** + +```bash +cd /Users/mjackson/Workspace1/DREAM3D-Build/EbsdLib-Release && cmake --build . --target generate_ipf_legends 2>&1 | tail -5 +``` + +This will fail to link because the other 10 subclasses don't implement `drawIPFAnnotations` yet. That's expected. To verify CubicOps in isolation, we need to complete all 11 subclasses first (Task 4). + +- [ ] **Step 6: Commit** + +```bash +git add Source/EbsdLib/LaueOps/CubicOps.h Source/EbsdLib/LaueOps/CubicOps.cpp +git commit -m "ENH: Refactor CubicOps to use shared annotation pipeline" +``` + +--- + +### Task 4: Refactor remaining 10 LaueOps subclasses + +Apply the same pattern from Task 3 to each remaining subclass. Each subclass needs: + +1. Add `drawIPFAnnotations()` and `adjustFigureOrigin()` override declarations to the header +2. Convert the file-scoped `DrawFullCircleAnnotations()` to the `drawIPFAnnotations()` virtual override (same body, new signature with `const` qualifier and class prefix) +3. Implement `adjustFigureOrigin()` with the subclass-specific figureOrigin adjustment +4. Refactor `generateIPFTriangleLegend()` to call `annotateIPFImage()` + +**Per-subclass figureOrigin adjustments** (from the existing code): + +| Subclass | adjustFigureOrigin when !generateEntirePlane | +|----------|---------------------------------------------| +| CubicOps | `figureOrigin[1] = fontPtSize * 2.0F` | +| CubicLowOps | `figureOrigin[1] = fontPtSize * 2.0F` | +| HexagonalOps | `figureOrigin[0] = -margins[3] * 0.5F; figureOrigin[1] = -halfHeight + margins[0] + fontPtSize` | +| HexagonalLowOps | `figureOrigin[0] = -halfWidth * 0.25F; figureOrigin[1] = margins[0]` | +| TrigonalOps | `figureOrigin[0] = -halfWidth * 0.25; figureOrigin[1] = -halfHeight * 0.5` | +| TrigonalLowOps | `figureOrigin[0] = -legendWidth * 0.0F; figureOrigin[1] = -legendHeight * 0.25F` | +| TetragonalOps | `figureOrigin[0] = -margins[2]; figureOrigin[1] = fontPtSize * 2.0F` | +| TetragonalLowOps | `figureOrigin[0] = -margins[3]` (Y unchanged) | +| OrthoRhombicOps | `figureOrigin[0] = -margins[3]` (Y unchanged) | +| MonoclinicOps | No adjustment (use default) | +| TriclinicOps | No adjustment (use default) | + +Note: MonoclinicOps and TriclinicOps have commented-out adjustments in the existing code. They use the default figureOrigin, so they do not need to override `adjustFigureOrigin()`. + +**Files (for each subclass):** +- Modify: `Source/EbsdLib/LaueOps/.h` +- Modify: `Source/EbsdLib/LaueOps/.cpp` + +- [ ] **Step 1: Refactor CubicLowOps** + +Follow Task 3 pattern. CubicLowOps has the same figureOrigin adjustment as CubicOps AND the same special figureCenter handling (if/else on generateEntirePlane before calling DrawFullCircleAnnotations). Make sure to handle the figureCenter adjustment inside `drawIPFAnnotations()`. + +- [ ] **Step 2: Refactor HexagonalOps** + +Follow Task 3 pattern. HexagonalOps has unique figureOrigin adjustment (both X and Y). No special figureCenter handling. + +- [ ] **Step 3: Refactor HexagonalLowOps** + +Follow Task 3 pattern. + +- [ ] **Step 4: Refactor TrigonalOps** + +Follow Task 3 pattern. + +- [ ] **Step 5: Refactor TrigonalLowOps** + +Follow Task 3 pattern. + +- [ ] **Step 6: Refactor TetragonalOps** + +Follow Task 3 pattern. + +- [ ] **Step 7: Refactor TetragonalLowOps** + +Follow Task 3 pattern. + +- [ ] **Step 8: Refactor OrthoRhombicOps** + +Follow Task 3 pattern. OrthoRhombicOps adjusts `figureOrigin[0] = -margins[3]`. + +- [ ] **Step 9: Refactor MonoclinicOps** + +Follow Task 3 pattern. No `adjustFigureOrigin` override needed (uses default). Still need `drawIPFAnnotations` override. + +- [ ] **Step 10: Refactor TriclinicOps** + +Follow Task 3 pattern. No `adjustFigureOrigin` override needed (uses default). Still need `drawIPFAnnotations` override. + +- [ ] **Step 11: Build the full library** + +```bash +cd /Users/mjackson/Workspace1/DREAM3D-Build/EbsdLib-Release && cmake --build . --target EbsdLib 2>&1 | tail -10 +``` +Expected: Clean build with no errors. + +- [ ] **Step 12: Build and run generate_ipf_legends to verify legend output is unchanged** + +```bash +cd /Users/mjackson/Workspace1/DREAM3D-Build/EbsdLib-Release && cmake --build . --target generate_ipf_legends && ./Bin/generate_ipf_legends 2>&1 +``` + +Visually compare the output images in `Testing/Temporary/IPF_Legend/` against the reference images at: +``` +/Users/mjackson/Workspace1/DREAM3D-Build/NX-Com-Qt69-Vtk95-Dbg/simplnx/EbsdLib/Testing/Temporary/IPF_Legend/ +``` + +Each Laue class directory should contain a `.tiff` and `_FULL.tiff` that match the reference visually. Pay special attention to: +- Label positions (Miller indices at correct corners) +- Triangle orientation and cropping +- Title text + +- [ ] **Step 13: Commit** + +```bash +git add Source/EbsdLib/LaueOps/*.h Source/EbsdLib/LaueOps/*.cpp +git commit -m "ENH: Refactor all 11 LaueOps subclasses to use shared annotation pipeline" +``` + +--- + +### Task 5: Implement `generateAnnotatedIPFDensity()` with color bar + +**Files:** +- Modify: `Source/EbsdLib/LaueOps/LaueOps.cpp` + +- [ ] **Step 1: Implement `generateAnnotatedIPFDensity()`** + +This method inlines the key parts of `generateInversePoleFigure()` to avoid double-computing the expensive intensity step. It computes directions + intensity, extracts global min/max for the color bar, creates the color images, then annotates. + +**Important:** `config.imageWidth` must equal `config.imageHeight` (square images required) because `ConvertColorOrder` and `MirrorImage` assume square dimensions. + +The `canvasDim` is computed from `imageDim` so that `legendWidth == imageDim` (no lossy scaling): +``` +legendWidth = canvasDim - 2 * (canvasDim / 7) +``` +Solving for `canvasDim` when `legendWidth == imageDim`: `canvasDim = imageDim * 7 / 5` + +Add after `annotateIPFImage()` in LaueOps.cpp: + +```cpp +std::vector LaueOps::generateAnnotatedIPFDensity( + InversePoleFigureConfiguration_t& config, + std::pair* outMinMax) const +{ + // Require square images (ConvertColorOrder and MirrorImage assume square) + if(config.imageWidth != config.imageHeight) + { + std::cerr << "generateAnnotatedIPFDensity: imageWidth must equal imageHeight" << std::endl; + return {}; + } + int imageDim = config.imageWidth; + + // Step 1: Compute IPF directions and intensity for all 3 sample directions + std::array dirs; + std::array intensities; + for(size_t i = 0; i < 3; i++) + { + dirs[i] = InversePoleFigureUtilities::computeIPFDirections(*this, config.eulers, config.sampleDirections[i]); + intensities[i] = InversePoleFigureUtilities::computeIPFIntensity(*this, dirs[i].get(), config.imageWidth, config.imageHeight, config.lambertDim, config.normalizeMRD); + } + + // Step 2: Find global min/max across all 3 intensity images + double globalMin = std::numeric_limits::max(); + double globalMax = std::numeric_limits::lowest(); + for(auto& intensity : intensities) + { + double* dPtr = intensity->getPointer(0); + size_t count = intensity->getNumberOfTuples(); + for(size_t i = 0; i < count; ++i) + { + if(dPtr[i] >= 0.0) + { + globalMin = std::min(globalMin, dPtr[i]); + globalMax = std::max(globalMax, dPtr[i]); + } + } + } + if(globalMax < globalMin) + { + globalMin = 0.0; + globalMax = 1.0; + } + if(outMinMax != nullptr) + { + *outMinMax = {globalMin, globalMax}; + } + + // Step 3: Create ARGB color images and annotate each one + // Compute canvasDim so legendWidth == imageDim (no scaling): + // legendWidth = canvasDim - 2 * floor(canvasDim / 7) + // We want legendWidth == imageDim, so canvasDim ~= imageDim * 7 / 5 + int canvasDim = static_cast(std::ceil(static_cast(imageDim) * 7.0 / 5.0)); + + std::vector annotatedImages(3); + std::array defaultLabels = {"IPF-0", "IPF-1", "IPF-2"}; + + for(size_t i = 0; i < 3; i++) + { + std::string label = (i < config.labels.size()) ? config.labels[i] : defaultLabels[i]; + std::string title = config.phaseName + " - " + label; + + // Create ARGB color image + std::vector dims = {4}; + ebsdlib::UInt8ArrayType::Pointer rawImage = ebsdlib::UInt8ArrayType::CreateArray( + static_cast(imageDim * imageDim), dims, label, true); + InversePoleFigureUtilities::createIPFColorImage( + intensities[i].get(), imageDim, imageDim, config.numColors, globalMin, globalMax, rawImage.get()); + + // Annotate with title and Miller index labels (SST-only view for density) + ebsdlib::UInt8ArrayType::Pointer annotated = annotateIPFImage( + rawImage, imageDim, canvasDim, title, false); + + // Add color bar + annotated = drawColorBar(annotated, canvasDim, config.numColors, globalMin, globalMax, config.normalizeMRD); + + annotatedImages[i] = annotated; + } + + return annotatedImages; +} +``` + +- [ ] **Step 2: Implement `drawColorBar()` helper** + +Add as a private method of LaueOps (declare in LaueOps.h in the private/protected section): + +```cpp +// In LaueOps.h, protected section: + UInt8ArrayType::Pointer drawColorBar( + UInt8ArrayType::Pointer image, + int canvasDim, + int numColors, + double minValue, double maxValue, + bool isMRD) const; +``` + +Implementation in LaueOps.cpp: + +```cpp +UInt8ArrayType::Pointer LaueOps::drawColorBar( + UInt8ArrayType::Pointer image, + int canvasDim, + int numColors, + double minValue, double maxValue, + bool isMRD) const +{ + const float fontPtSize = static_cast(canvasDim) / 24.0f; + + // Create canvas and draw the existing image onto it + canvas_ity::canvas context(canvasDim, canvasDim); + + std::vector latoBold = ebsdlib::fonts::GetLatoBold(); + std::vector latoRegular = ebsdlib::fonts::GetLatoRegular(); + + // Draw the input image (RGB, 3 components) onto the canvas + // canvas_ity expects RGBA, so we need to add alpha channel back + size_t numPixels = image->getNumberOfTuples(); + ebsdlib::UInt8ArrayType::Pointer rgbaImage = ebsdlib::UInt8ArrayType::CreateArray(numPixels, {4ULL}, "RGBA", true); + for(size_t i = 0; i < numPixels; i++) + { + uint8_t* src = image->getTuplePointer(i); + uint8_t* dst = rgbaImage->getTuplePointer(i); + dst[0] = src[0]; + dst[1] = src[1]; + dst[2] = src[2]; + dst[3] = 255; + } + + context.draw_image(rgbaImage->getPointer(0), canvasDim, canvasDim, + canvasDim * 4, 0.0f, 0.0f, + static_cast(canvasDim), static_cast(canvasDim)); + + // Color bar layout + float barX = static_cast(canvasDim) - fontPtSize * 3.0f; + float barY = fontPtSize * 4.0f; + float barWidth = fontPtSize * 1.0f; + float barHeight = static_cast(canvasDim) - fontPtSize * 8.0f; + + // Get color table + std::vector colors; + EbsdColorTable::GetColorTable(numColors, colors); + + // Draw color bar segments (bottom = min, top = max) + float segmentHeight = barHeight / static_cast(numColors); + for(int c = 0; c < numColors; c++) + { + float y = barY + barHeight - (c + 1) * segmentHeight; + int ci = c * 3; + context.set_color(canvas_ity::fill_style, colors[ci], colors[ci + 1], colors[ci + 2], 1.0f); + context.move_to(barX, y); + context.line_to(barX + barWidth, y); + context.line_to(barX + barWidth, y + segmentHeight); + context.line_to(barX, y + segmentHeight); + context.close_path(); + context.fill(); + } + + // Draw color bar outline + context.set_color(canvas_ity::stroke_style, 0.0f, 0.0f, 0.0f, 1.0f); + context.set_line_width(1.0f); + context.move_to(barX, barY); + context.line_to(barX + barWidth, barY); + context.line_to(barX + barWidth, barY + barHeight); + context.line_to(barX, barY + barHeight); + context.close_path(); + context.stroke(); + + // Draw min/max labels + context.set_font(latoRegular.data(), static_cast(latoRegular.size()), fontPtSize * 0.8f); + context.set_color(canvas_ity::fill_style, 0.0f, 0.0f, 0.0f, 1.0f); + + std::ostringstream maxStr; + maxStr << std::fixed << std::setprecision(1) << maxValue; + context.fill_text(maxStr.str().c_str(), barX - fontPtSize * 0.5f, barY - fontPtSize * 0.3f); + + std::ostringstream minStr; + minStr << std::fixed << std::setprecision(1) << minValue; + context.fill_text(minStr.str().c_str(), barX - fontPtSize * 0.5f, barY + barHeight + fontPtSize); + + // Draw "MRD" or "Counts" label + std::string unitLabel = isMRD ? "MRD" : "Counts"; + context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize * 0.7f); + context.fill_text(unitLabel.c_str(), barX - fontPtSize * 0.2f, barY + barHeight + fontPtSize * 2.0f); + + // Extract and return + ebsdlib::UInt8ArrayType::Pointer result = ebsdlib::UInt8ArrayType::CreateArray(canvasDim * canvasDim, {4ULL}, "Annotated IPF Density", true); + context.get_image_data(result->getPointer(0), canvasDim, canvasDim, canvasDim * 4, 0, 0); + + return ebsdlib::RemoveAlphaChannel(result.get()); +} +``` + +Note: `EbsdColorTable::GetColorTable` returns float values in [0, 1] range. The `colors` vector has `numColors * 3` elements (RGB triplets). Verify this by reading `Source/EbsdLib/Utilities/ColorTable.h`. + +- [ ] **Step 3: Add required include** + +Add to LaueOps.cpp: +```cpp +#include +#include +``` + +- [ ] **Step 4: Build** + +```bash +cd /Users/mjackson/Workspace1/DREAM3D-Build/EbsdLib-Release && cmake --build . --target EbsdLib 2>&1 | tail -10 +``` +Expected: Clean build. + +- [ ] **Step 5: Commit** + +```bash +git add Source/EbsdLib/LaueOps/LaueOps.h Source/EbsdLib/LaueOps/LaueOps.cpp +git commit -m "ENH: Implement generateAnnotatedIPFDensity() with color bar rendering" +``` + +--- + +### Task 6: Update generate_ipf_from_file.cpp to use annotated output + +**Files:** +- Modify: `Source/Apps/generate_ipf_from_file.cpp` + +- [ ] **Step 1: Update `generateIPFForPhase()` to use `generateAnnotatedIPFDensity()`** + +In `generate_ipf_from_file.cpp`, replace the `generateIPFForPhase()` function. The key change is calling `ops.generateAnnotatedIPFDensity(config)` instead of `ops.generateInversePoleFigure(config)`, and the returned images are now RGB (3 components) instead of ARGB (4 components), so skip the ARGB→RGB conversion: + +```cpp +void generateIPFForPhase(const LaueOps& ops, ebsdlib::FloatArrayType* eulers, + const std::string& outputDir, int imageWidth, int imageHeight, + int lambertDim, const std::string& phaseLabel) +{ + std::string className = ops.getSymmetryName(); + std::cout << "Generating annotated IPF density for phase: " << phaseLabel + << " (" << className << ", " << eulers->getNumberOfTuples() + << " orientations)" << std::endl; + + InversePoleFigureConfiguration_t config; + config.eulers = eulers; + config.sampleDirections = {Matrix3X1D(1.0, 0.0, 0.0), Matrix3X1D(0.0, 1.0, 0.0), Matrix3X1D(0.0, 0.0, 1.0)}; + config.imageWidth = imageWidth; + config.imageHeight = imageHeight; + config.lambertDim = lambertDim; + config.numColors = 64; + config.colorMap = "Default"; + config.normalizeMRD = true; + config.labels = {"RD", "TD", "ND"}; + config.phaseName = phaseLabel; + config.FlipFinalImage = false; + + auto images = ops.generateAnnotatedIPFDensity(config); + + // Sanitize phase name for use as a filename + std::string safeName = phaseLabel; + for(auto& c : safeName) + { + if(c == '/' || c == '\\' || c == ' ' || c == '(' || c == ')') + { + c = '_'; + } + } + + // Images are already RGB (3 components) — write directly + // canvasDim matches the formula in generateAnnotatedIPFDensity: imageDim * 7 / 5 + std::array dirLabels = {"RD", "TD", "ND"}; + int canvasDim = static_cast(std::ceil(static_cast(imageWidth) * 7.0 / 5.0)); + for(size_t i = 0; i < 3; i++) + { + std::ostringstream filePath; + filePath << outputDir << "/" << safeName << "_IPF_" << dirLabels[i] << ".tiff"; + auto result = TiffWriter::WriteColorImage(filePath.str(), canvasDim, canvasDim, 3, images[i]->data()); + if(result.first < 0) + { + std::cerr << " ERROR writing " << filePath.str() << ": " << result.second << std::endl; + } + else + { + std::cout << " Wrote: " << filePath.str() << std::endl; + } + } +} +``` + +Also remove the `convertARGBtoRGB()` and `writeIPFImage()` helper functions since they're no longer needed. + +- [ ] **Step 2: Build and test** + +```bash +cd /Users/mjackson/Workspace1/DREAM3D-Build/EbsdLib-Release && cmake --build . --target generate_ipf_from_file && ./Bin/generate_ipf_from_file "/Users/mjackson/Applications/NXData/Data/T12-MAI-2010/fw-ar-IF1-aptr12-corr.ctf" /tmp/ipf_annotated_test 2>&1 +``` + +Visually inspect the output images at `/tmp/ipf_annotated_test/` — they should now have: +- Title at top (phase name + direction label) +- Miller index labels at SST corners +- Color bar on the right with MRD min/max values + +- [ ] **Step 3: Commit** + +```bash +git add Source/Apps/generate_ipf_from_file.cpp +git commit -m "ENH: Update generate_ipf_from_file to use annotated IPF density output" +``` + +--- + +### Task 7: Update generate_ipf_density.cpp to use annotated output + +**Files:** +- Modify: `Source/Apps/generate_ipf_density.cpp` + +- [ ] **Step 1: Update the app to use `generateAnnotatedIPFDensity()`** + +Update the `generateIPFForLaueClass()` function in the same way as Task 6 — call `ops.generateAnnotatedIPFDensity(config)` and write the returned RGB images directly. Also update `generateSingleIPFForLaueClass()` similarly if desired, or leave it using the raw pipeline for comparison. + +- [ ] **Step 2: Build and test** + +```bash +cd /Users/mjackson/Workspace1/DREAM3D-Build/EbsdLib-Release && cmake --build . --target generate_ipf_density && ./Bin/generate_ipf_density /tmp/ipf_density_annotated 500 2>&1 +``` + +Visually inspect the output. All 11 Laue classes should produce properly annotated images. + +- [ ] **Step 3: Commit** + +```bash +git add Source/Apps/generate_ipf_density.cpp +git commit -m "ENH: Update generate_ipf_density to use annotated IPF density output" +``` + +--- + +### Task 8: Run all unit tests and verify no regressions + +**Files:** +- Read: `Source/Test/InversePoleFigureTest.cpp` (to understand what's tested) + +- [ ] **Step 1: Build all targets** + +```bash +cd /Users/mjackson/Workspace1/DREAM3D-Build/EbsdLib-Release && cmake --build . --target all 2>&1 | tail -10 +``` +Expected: Clean build. + +- [ ] **Step 2: Run all EbsdLib tests** + +```bash +cd /Users/mjackson/Workspace1/DREAM3D-Build/EbsdLib-Release && ctest -R "EbsdLib::" --verbose 2>&1 +``` +Expected: All tests pass. + +- [ ] **Step 3: Run generate_ipf_legends and visually verify** + +```bash +cd /Users/mjackson/Workspace1/DREAM3D-Build/EbsdLib-Release && ./Bin/generate_ipf_legends 2>&1 +``` + +Compare output images with reference images to confirm the refactor didn't change the legend output. + +- [ ] **Step 4: Commit any test fixes if needed** + +--- + +## Important Notes + +### No CMake changes required + +All new code is added to existing source files (`LaueOps.h`, `LaueOps.cpp`, and the 11 subclass `.h`/`.cpp` files). No new source files are created. The `canvas_ity.hpp` include added to `LaueOps.h` is already a linked dependency of the EbsdLib target (via `PRIVATE` include in `SourceList.cmake`). No CMake modifications are needed. + +### The figureCenter special case in CubicOps and CubicLowOps + +These two subclasses adjust `figureCenter` in `generateIPFTriangleLegend()` before calling `DrawFullCircleAnnotations()` when `generateEntirePlane == false`: +```cpp +figureCenter = {figureOrigin[0], figureOrigin[1] + legendHeight}; +``` +This adjustment must be moved INTO the `drawIPFAnnotations()` override for these two classes, since `annotateIPFImage()` always computes `figureCenter = {figureOrigin[0] + halfWidth, figureOrigin[1] + halfHeight}`. + +Recompute `legendHeight` inside `drawIPFAnnotations`: +```cpp +void CubicOps::drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, + float fontPtSize, const std::vector& margins, + std::array figureOrigin, + std::array figureCenter, + bool drawFullCircle) const +{ + if(!drawFullCircle) + { + // Recompute legendHeight from canvasDim and margins (same formula as annotateIPFImage) + int legendHeight = canvasDim - static_cast(margins[0]) - static_cast(margins[2]); + int legendWidth = canvasDim - static_cast(margins[1]) - static_cast(margins[3]); + if(legendHeight > legendWidth) { legendHeight = legendWidth; } + figureCenter = {figureOrigin[0], figureOrigin[1] + static_cast(legendHeight)}; + } + // ... rest of existing DrawFullCircleAnnotations body ... +} +``` + +### Square image requirement + +`ConvertColorOrder()` and `MirrorImage()` in `CanvasUtilities.hpp` both take a single `imageDim` parameter and iterate `imageDim × imageDim` pixels. This means all input images must be square. `generateAnnotatedIPFDensity()` enforces `config.imageWidth == config.imageHeight` with an early return and error message. + +### Canvas size calculation + +To avoid lossy scaling of the density image, `canvasDim` is computed so that `legendWidth` (the space available for the image after margins) equals `imageDim` exactly: +``` +legendWidth = canvasDim - 2 * floor(canvasDim / 7) +``` +Solving: `canvasDim = ceil(imageDim * 7 / 5)` + +For imageDim=1024: canvasDim=1434, legendWidth=1434 - 2*204 = 1026 ≈ 1024. Close enough — canvas_ity handles the minor scaling. For pixel-perfect output, the density images could be generated at exactly `legendWidth` pixels, but the ~0.2% difference is imperceptible. + +### Color order conventions + +- `CreateIPFLegend()` and `createIPFColorImage()` both return pixels packed as uint32 via `RgbColor::dRgb()`: on little-endian systems the byte layout is `[B, G, R, A]` +- `ConvertColorOrder()` swaps bytes 0↔2: `[B,G,R,A] → [R,G,B,A]` (RGBA for canvas_ity) +- `MirrorImage()` flips rows vertically (image drawn with +Y down, canvas_ity uses +Y up) +- `annotateIPFImage()` handles both transforms internally, then removes alpha at the end +- Final output is **RGB** (3 components) + +### The `drawIPFAnnotations` parameter signature + +The `margins` parameter uses `const std::vector&` (pass by const reference) for consistency. The existing `DrawFullCircleAnnotations` free functions use pass-by-value. When converting, change the parameter to `const std::vector&` to match the new convention. + +### Density always uses SST-only view + +`generateAnnotatedIPFDensity()` always passes `generateEntirePlane = false` to `annotateIPFImage()`. This is intentional: IPF density plots display data within the Standard Stereographic Triangle, not the full stereographic circle. diff --git a/Docs/superpowers/plans/2026-03-23-nolze-hielscher-ipf-colors.md b/Docs/superpowers/plans/2026-03-23-nolze-hielscher-ipf-colors.md new file mode 100644 index 00000000..0e82abc3 --- /dev/null +++ b/Docs/superpowers/plans/2026-03-23-nolze-hielscher-ipf-colors.md @@ -0,0 +1,1791 @@ +# Nolze-Hielscher IPF Color Palettes Implementation Plan + +> **For agentic workers:** REQUIRED SUB-SKILL: Use superpowers:subagent-driven-development (recommended) or superpowers:executing-plans to implement this plan task-by-task. Steps use checkbox (`- [ ]`) syntax for tracking. + +**Goal:** Add perceptually-improved IPF color palettes to EbsdLib based on the Nolze-Hielscher (2016) algorithm, implemented as a pluggable color key system alongside the existing TSL coloring. + +**Architecture:** Introduce an `IColorKey` interface with concrete implementations for TSL (current behavior, refactored) and Nolze-Hielscher (new). A `FundamentalSectorGeometry` utility computes normalized polar coordinates within arbitrary spherical sectors. The existing `LaueOps` virtual dispatch is extended with a color key selector, defaulting to TSL for backward compatibility. + +**Tech Stack:** C++20, Catch2 (testing), CMake, Eigen3 (already a dependency) + +**Paper Reference:** Nolze, G. & Hielscher, R. "Orientations -- perfectly colored." *J. Appl. Crystallogr.* 49.5 (2016): 1786-1802. DOI: 10.1107/S1600576716012942. Preprint: https://www.tu-chemnitz.de/mathematik/preprint/2016/PREPRINT_01.pdf + +--- + +## Coding Standards Reference (from CLAUDE.md) + +- C++20, Allman brace style, 200-column limit, 2-space indent +- Classes: `CamelCase`, methods: `camelBack`, private members: `m_` + `CamelCase` +- Headers: `.hpp`, sources: `.cpp` +- Constants: `k_` prefix + `CamelCase` +- Type aliases: `CamelCase` + `Type` suffix + +## Build & Test Commands + +```bash +# Configure +cd /Users/mjackson/Workspace1/EbsdLib && cmake --preset EbsdLib-Release + +# Build +cd /Users/mjackson/Workspace5/DREAM3D-Build/EbsdLib-Release && cmake --build . --target all + +# Run specific test +cd /Users/mjackson/Workspace5/DREAM3D-Build/EbsdLib-Release && ctest -R "EbsdLib::ColorKey" --verbose + +# Run all tests +cd /Users/mjackson/Workspace5/DREAM3D-Build/EbsdLib-Release && ctest -R "EbsdLib::" --verbose +``` + +--- + +## File Structure + +### New Files + +| File | Responsibility | +|------|---------------| +| `Source/EbsdLib/Utilities/ColorSpaceUtils.hpp` | HSL/HSV/RGB conversions, hue correction precomputation | +| `Source/EbsdLib/Utilities/IColorKey.hpp` | Abstract interface for IPF color key strategies | +| `Source/EbsdLib/Utilities/TSLColorKey.hpp` | Refactored current algorithm behind IColorKey interface | +| `Source/EbsdLib/Utilities/TSLColorKey.cpp` | TSL implementation (extracted from LaueOps::computeIPFColor) | +| `Source/EbsdLib/Utilities/FundamentalSectorGeometry.hpp` | Sector definition: boundary normals, vertices, barycenter, polar coordinate computation | +| `Source/EbsdLib/Utilities/FundamentalSectorGeometry.cpp` | Polar coordinate algorithms, azimuthal correction | +| `Source/EbsdLib/Utilities/NolzeHielscherColorKey.hpp` | Nolze-Hielscher color key header | +| `Source/EbsdLib/Utilities/NolzeHielscherColorKey.cpp` | Full N-H algorithm: hue speed function, lightness, saturation, extended key | +| `Source/Test/ColorSpaceUtilsTest.cpp` | Tests for HSL/HSV/RGB conversions | +| `Source/Test/FundamentalSectorGeometryTest.cpp` | Tests for polar coordinates, barycenter, boundary intersection | +| `Source/Test/NolzeHielscherColorKeyTest.cpp` | Tests for N-H color mapping, all Laue groups | +| `Source/Test/TSLColorKeyTest.cpp` | Regression tests: refactored TSL produces identical output to current code | + +### Modified Files + +| File | Change | +|------|--------| +| `Source/EbsdLib/Utilities/SourceList.cmake` | Add new .hpp/.cpp files to build | +| `Source/Test/CMakeLists.txt` | Add new test source files | +| `Source/EbsdLib/LaueOps/LaueOps.h` | Add `setColorKey()` / `getColorKey()` methods; add virtual `getFundamentalSectorGeometry()` | +| `Source/EbsdLib/LaueOps/LaueOps.cpp` | Wire `computeIPFColor()` to delegate to active IColorKey | +| `Source/EbsdLib/LaueOps/CubicOps.cpp` | Override `getFundamentalSectorGeometry()` with cubic sector definition | +| (and all other 10 LaueOps subclass .cpp files) | Same: override `getFundamentalSectorGeometry()` | + +--- + +## Existing Code Reference + +### Key Types (already in EbsdLib) +- `Rgb = uint32_t` -- ARGB format (0xAARRGGBB), defined in `ColorTable.h:65` +- `QuatD` -- double quaternion, used for symmetry operators +- `Matrix3X3D` -- 3x3 rotation matrix +- `Matrix3X1D` -- 3x1 column vector (used as direction vector) +- `FloatArrayType::Pointer`, `UInt8ArrayType::Pointer` -- dynamic arrays + +### Key Methods (already in EbsdLib) +- `LaueOps::computeIPFColor()` -- `LaueOps.cpp:159-228`, current TSL coloring +- `LaueOps::generateIPFColor()` -- virtual, each subclass delegates to `computeIPFColor()` +- `CubicOps::inUnitTriangle(eta, chi)` -- `CubicOps.cpp:1649-1664`, SST boundary test +- `CubicOps::getIpfColorAngleLimits(eta)` -- `CubicOps.cpp:1631-1646`, returns {etaMin, etaMax, chiMax} +- `LaueOps::GetAllOrientationOps()` -- returns vector of 11 LaueOps, indexed by CrystalStructure constants + +### CrystalStructure Index Mapping (EbsdLibConstants.h:221-239) +``` +Index 0 = Hexagonal_High (6/mmm) Index 6 = OrthoRhombic (mmm) +Index 1 = Cubic_High (m-3m) Index 7 = Tetragonal_Low (4/m) +Index 2 = Hexagonal_Low (6/m) Index 8 = Tetragonal_High (4/mmm) +Index 3 = Cubic_Low (m-3) Index 9 = Trigonal_Low (-3) +Index 4 = Triclinic (-1) Index 10 = Trigonal_High (-3m) +Index 5 = Monoclinic (2/m) +``` + +### SST Boundary Definitions (from inUnitTriangle in each subclass) + +| Laue Group | etaMin (deg) | etaMax (deg) | chiMax | Vertices (crystal directions) | +|------------|-------------|-------------|--------|-------------------------------| +| m-3m (CubicOps) | 0 | 45 | `acos(sqrt(1/(2+tan^2(eta))))` | [001], [011]/sqrt2, [111]/sqrt3 | +| m-3 (CubicLowOps) | 0 | 90 | `acos(sqrt(1/(2+tan^2(eta))))` | [001], [010], [011]/sqrt2, [111]/sqrt3 | +| 6/mmm (HexagonalOps) | 0 | 30 | 90 | [0001], [2-1-10], [10-10] | +| 6/m (HexagonalLowOps) | 0 | 60 | 90 | [0001], [2-1-10], [11-20] | +| 4/mmm (TetragonalOps) | 0 | 45 | 90 | [001], [100], [110]/sqrt2 | +| 4/m (TetragonalLowOps) | 0 | 90 | 90 | [001], [100], [010] | +| -3m (TrigonalOps) | -90 | -30 | 90 | (rotated hexagonal sector) | +| -3 (TrigonalLowOps) | -120 | 0 | 90 | (rotated hexagonal sector) | +| mmm (OrthoRhombicOps) | 0 | 90 | 90 | [001], [100], [010] | +| 2/m (MonoclinicOps) | 0 | 180 | 90 | [001], [100], [-100] | +| -1 (TriclinicOps) | 0 | 180 | 90 | Full upper hemisphere | + +### Point Group Classification for Color Key Mode (Paper Table 1) + +| Laue Group | Color Key Mode | Supergroup P+ | Reflection Needed? | +|------------|---------------|---------------|-------------------| +| m-3m | Standard | (self) | No | +| m-3 | Extended | m-3m | Yes | +| 6/mmm | Standard | (self) | No | +| 6/m | Extended | 6/mmm | Yes | +| 4/mmm | Standard | (self) | No | +| 4/m | Extended | 4/mmm | Yes | +| -3m | Standard | (self) | No | +| -3 | Impossible | - | N/A (topologically impossible) | +| mmm | Standard | (self) | No | +| 2/m | Extended | mmm | Yes | +| -1 | Impossible | - | N/A (topologically impossible) | + +--- + +## Algorithm Reference (from Paper, Clean-Room) + +### The Complete Nolze-Hielscher Mapping + +**Input:** Unit crystal direction h (already projected into the fundamental sector) + +**Output:** RGB color (0-255 per channel) + +``` +1. Compute barycenter p = normalize(sum(vertices)) + +2. Compute normalized polar coordinates (radius, rho) relative to p: + - radius: For each boundary normal N_j: + B_j = normalize(cross(cross(h, p), N_j)) + ratio_j = angle(-h, B_j) / angle(-p, B_j) + radius = min(ratio_j) over all j // in [0, 1] + - rho: Project h onto tangent plane at p, measure angle via atan2 + +3. Apply azimuthal correction: + - For 3-vertex sectors: redistribute rho so each vertex gets 1/3 of [0, 2*pi] + - Weight by hue speed function: v(rho) = d(rho) * (0.5 + G(0) + G(120) + G(-120)) + where G(c) = exp(-|wrap(rho - c)|/4) and d(rho) = distance from center to boundary + - H = cumulative integral of v(rho), normalized to [0, 360] + +4. FOR STANDARD KEYS (all-mirror boundaries): + - theta = radius * pi/2 + - L = 0.25 * (theta/(pi/2)) + 0.75 * sin^2(theta/2) // Paper Appendix A.2, lambda_L=0.25 + - S = 1 - 0.5 * |2*L - 1| // Paper Appendix A.2, lambda_S=0.25 + +5. FOR EXTENDED KEYS (non-mirror boundaries): + - Also project h into supergroup P+ sector -> h_plus + - If h_plus != h (direction fell in extended half): + radius_mapped = (1 - radius) / 2 // black center: [0.5, 0.0] + Else: + radius_mapped = 0.5 + radius / 2 // white center: [0.5, 1.0] + - L = lightness formula applied to radius_mapped + - S = saturation formula applied to L + +6. Convert (H, S, L) -> RGB via standard HSL-to-RGB +``` + +### Key Constants (from Paper) +``` +lambda_L = 0.25 // lightness nonlinearity (Appendix A.2, Fig. 16b) +lambda_S = 0.25 // saturation control (Appendix A.2, Fig. 16c) +Gaussian_width = 4 // in hue speed function exponent (Appendix A.1) +Gaussian_baseline = 0.5 // constant term in v(rho) (Appendix A.1) +Gaussian_centers = {0, 120, -120} degrees // primary color positions +``` + +--- + +## Tasks + +### Task 1: ColorSpaceUtils -- HSL/HSV/RGB Conversions + +**Files:** +- Create: `Source/EbsdLib/Utilities/ColorSpaceUtils.hpp` +- Create: `Source/Test/ColorSpaceUtilsTest.cpp` +- Modify: `Source/EbsdLib/Utilities/SourceList.cmake` +- Modify: `Source/Test/CMakeLists.txt` + +- [ ] **Step 1: Write the failing tests** + +```cpp +// Source/Test/ColorSpaceUtilsTest.cpp +#include +#include "EbsdLib/Utilities/ColorSpaceUtils.hpp" + +TEST_CASE("ebsdlib::ColorSpaceUtils::HslToRgb", "[EbsdLib][ColorSpaceUtils]") +{ + SECTION("Pure Red") + { + auto [r, g, b] = ebsdlib::color::hslToRgb(0.0, 1.0, 0.5); + REQUIRE(r == Approx(1.0).margin(1e-6)); + REQUIRE(g == Approx(0.0).margin(1e-6)); + REQUIRE(b == Approx(0.0).margin(1e-6)); + } + SECTION("Pure Green") + { + auto [r, g, b] = ebsdlib::color::hslToRgb(1.0 / 3.0, 1.0, 0.5); + REQUIRE(r == Approx(0.0).margin(1e-6)); + REQUIRE(g == Approx(1.0).margin(1e-6)); + REQUIRE(b == Approx(0.0).margin(1e-6)); + } + SECTION("Pure Blue") + { + auto [r, g, b] = ebsdlib::color::hslToRgb(2.0 / 3.0, 1.0, 0.5); + REQUIRE(r == Approx(0.0).margin(1e-6)); + REQUIRE(g == Approx(0.0).margin(1e-6)); + REQUIRE(b == Approx(1.0).margin(1e-6)); + } + SECTION("White") + { + auto [r, g, b] = ebsdlib::color::hslToRgb(0.0, 0.0, 1.0); + REQUIRE(r == Approx(1.0).margin(1e-6)); + REQUIRE(g == Approx(1.0).margin(1e-6)); + REQUIRE(b == Approx(1.0).margin(1e-6)); + } + SECTION("Black") + { + auto [r, g, b] = ebsdlib::color::hslToRgb(0.0, 0.0, 0.0); + REQUIRE(r == Approx(0.0).margin(1e-6)); + REQUIRE(g == Approx(0.0).margin(1e-6)); + REQUIRE(b == Approx(0.0).margin(1e-6)); + } + SECTION("50% Gray") + { + auto [r, g, b] = ebsdlib::color::hslToRgb(0.0, 0.0, 0.5); + REQUIRE(r == Approx(0.5).margin(1e-6)); + REQUIRE(g == Approx(0.5).margin(1e-6)); + REQUIRE(b == Approx(0.5).margin(1e-6)); + } + SECTION("Yellow (H=60deg)") + { + auto [r, g, b] = ebsdlib::color::hslToRgb(1.0 / 6.0, 1.0, 0.5); + REQUIRE(r == Approx(1.0).margin(1e-6)); + REQUIRE(g == Approx(1.0).margin(1e-6)); + REQUIRE(b == Approx(0.0).margin(1e-6)); + } +} + +TEST_CASE("ebsdlib::ColorSpaceUtils::HslToHsv", "[EbsdLib][ColorSpaceUtils]") +{ + SECTION("Full saturation, mid lightness -> V=1, S=1") + { + auto [h, s, v] = ebsdlib::color::hslToHsv(0.0, 1.0, 0.5); + REQUIRE(h == Approx(0.0)); + REQUIRE(s == Approx(1.0)); + REQUIRE(v == Approx(1.0)); + } + SECTION("Zero saturation -> S_hsv = 0") + { + auto [h, s, v] = ebsdlib::color::hslToHsv(0.5, 0.0, 0.5); + REQUIRE(s == Approx(0.0)); + REQUIRE(v == Approx(0.5)); + } +} + +TEST_CASE("ebsdlib::ColorSpaceUtils::RoundTrip", "[EbsdLib][ColorSpaceUtils]") +{ + // HSL -> RGB -> verify it matches known values for several hues + for(double hue = 0.0; hue < 1.0; hue += 0.1) + { + auto [r, g, b] = ebsdlib::color::hslToRgb(hue, 1.0, 0.5); + REQUIRE(r >= 0.0); + REQUIRE(r <= 1.0); + REQUIRE(g >= 0.0); + REQUIRE(g <= 1.0); + REQUIRE(b >= 0.0); + REQUIRE(b <= 1.0); + // At L=0.5, S=1: max component should be 1.0 + double maxVal = std::max({r, g, b}); + REQUIRE(maxVal == Approx(1.0).margin(1e-6)); + } +} +``` + +- [ ] **Step 2: Run tests to verify they fail** + +Run: `cd /Users/mjackson/Workspace5/DREAM3D-Build/EbsdLib-Release && cmake --build . --target all && ctest -R "ColorSpaceUtils" --verbose` +Expected: Compilation failure (files don't exist yet) + +- [ ] **Step 3: Write the implementation** + +```cpp +// Source/EbsdLib/Utilities/ColorSpaceUtils.hpp +#pragma once + +#include "EbsdLib/EbsdLib.h" + +#include +#include +#include + +namespace ebsdlib +{ +namespace color +{ + +/** + * @brief Convert HSL to RGB. All inputs and outputs in [0, 1]. + * @param h Hue in [0, 1) where 0=red, 1/3=green, 2/3=blue + * @param s Saturation in [0, 1] + * @param l Lightness in [0, 1] + * @return {r, g, b} each in [0, 1] + */ +inline std::array hslToRgb(double h, double s, double l) +{ + double c = (1.0 - std::abs(2.0 * l - 1.0)) * s; + double hp = h * 6.0; + double x = c * (1.0 - std::abs(std::fmod(hp, 2.0) - 1.0)); + double m = l - c / 2.0; + + double r1 = 0.0; + double g1 = 0.0; + double b1 = 0.0; + + if(hp < 1.0) + { + r1 = c; g1 = x; b1 = 0.0; + } + else if(hp < 2.0) + { + r1 = x; g1 = c; b1 = 0.0; + } + else if(hp < 3.0) + { + r1 = 0.0; g1 = c; b1 = x; + } + else if(hp < 4.0) + { + r1 = 0.0; g1 = x; b1 = c; + } + else if(hp < 5.0) + { + r1 = x; g1 = 0.0; b1 = c; + } + else + { + r1 = c; g1 = 0.0; b1 = x; + } + + return {std::clamp(r1 + m, 0.0, 1.0), + std::clamp(g1 + m, 0.0, 1.0), + std::clamp(b1 + m, 0.0, 1.0)}; +} + +/** + * @brief Convert HSL to HSV. All inputs and outputs in [0, 1]. + */ +inline std::array hslToHsv(double h, double s, double l) +{ + double l2 = 2.0 * l; + double s2 = s * ((l2 <= 1.0) ? l2 : (2.0 - l2)); + double v = (l2 + s2) / 2.0; + double sv = (l2 + s2 > 1e-12) ? (2.0 * s2 / (l2 + s2)) : 0.0; + return {h, sv, v}; +} + +/** + * @brief Convert RGB [0,1] to 8-bit [0,255] clamped. + */ +inline std::array rgbToBytes(double r, double g, double b) +{ + return {static_cast(std::clamp(r * 255.0, 0.0, 255.0)), + static_cast(std::clamp(g * 255.0, 0.0, 255.0)), + static_cast(std::clamp(b * 255.0, 0.0, 255.0))}; +} + +} // namespace color +} // namespace ebsdlib +``` + +- [ ] **Step 4: Add to build system** + +Add `ColorSpaceUtils.hpp` to `Source/EbsdLib/Utilities/SourceList.cmake` in the headers list. +Add `ColorSpaceUtilsTest.cpp` to `Source/Test/CMakeLists.txt` in the test sources list. + +- [ ] **Step 5: Build and run tests** + +Run: `cd /Users/mjackson/Workspace5/DREAM3D-Build/EbsdLib-Release && cmake --build . --target all && ctest -R "ColorSpaceUtils" --verbose` +Expected: All PASS + +- [ ] **Step 6: Commit** + +```bash +git add Source/EbsdLib/Utilities/ColorSpaceUtils.hpp Source/Test/ColorSpaceUtilsTest.cpp Source/EbsdLib/Utilities/SourceList.cmake Source/Test/CMakeLists.txt +git commit -m "feat: add ColorSpaceUtils with HSL/HSV/RGB conversions" +``` + +--- + +### Task 2: IColorKey Interface + +**Files:** +- Create: `Source/EbsdLib/Utilities/IColorKey.hpp` +- Modify: `Source/EbsdLib/Utilities/SourceList.cmake` + +- [ ] **Step 1: Write the interface** + +```cpp +// Source/EbsdLib/Utilities/IColorKey.hpp +#pragma once + +#include "EbsdLib/EbsdLib.h" + +#include +#include +#include + +namespace ebsdlib +{ + +/** + * @brief Abstract interface for IPF color key strategies. + * + * Maps a crystal direction (already projected into the fundamental sector) + * to an RGB color. Implementations include TSL (traditional) and + * Nolze-Hielscher (perceptually improved). + * + * Two overloads are provided: + * - direction2Color(Vec3): takes a 3D unit direction vector (preferred for N-H) + * - direction2Color(eta, chi, angleLimits): takes spherical coords (TSL compatibility) + */ +class EbsdLib_EXPORT IColorKey +{ +public: + using Pointer = std::shared_ptr; + using Vec3 = std::array; + + virtual ~IColorKey() = default; + + /** + * @brief Map a unit crystal direction vector (in the fundamental sector) to an RGB color. + * This is the primary interface. The direction must already be projected into the SST. + * @param direction Unit direction vector {x, y, z} in the fundamental sector + * @return {R, G, B} each in [0.0, 1.0] + */ + virtual Vec3 direction2Color(const Vec3& direction) const = 0; + + /** + * @brief Map a crystal direction via spherical coordinates to an RGB color. + * Provided for backward compatibility with the TSL pipeline. + * Default implementation converts to a direction vector and calls the Vec3 overload. + * @param eta Azimuthal angle of the direction (radians) + * @param chi Polar angle of the direction from z-axis (radians) + * @param angleLimits {etaMin, etaMax, chiMax} from the LaueOps subclass + * @return {R, G, B} each in [0.0, 1.0] + */ + virtual Vec3 direction2Color(double eta, double chi, const Vec3& angleLimits) const + { + // Default: convert spherical to Cartesian and delegate + double sinChi = std::sin(chi); + Vec3 dir = {sinChi * std::cos(eta), sinChi * std::sin(eta), std::cos(chi)}; + return direction2Color(dir); + } + + /** + * @brief Human-readable name of this color key. + */ + virtual std::string name() const = 0; +}; + +} // namespace ebsdlib +``` + +- [ ] **Step 2: Add to build system** + +Add `IColorKey.hpp` to `Source/EbsdLib/Utilities/SourceList.cmake` headers list. + +- [ ] **Step 3: Build to verify compilation** + +Run: `cd /Users/mjackson/Workspace5/DREAM3D-Build/EbsdLib-Release && cmake --build . --target all` +Expected: Compiles successfully (header-only, no test yet) + +- [ ] **Step 4: Commit** + +```bash +git add Source/EbsdLib/Utilities/IColorKey.hpp Source/EbsdLib/Utilities/SourceList.cmake +git commit -m "feat: add IColorKey abstract interface for pluggable IPF color strategies" +``` + +--- + +### Task 3: TSLColorKey -- Refactor Current Algorithm + +**Files:** +- Create: `Source/EbsdLib/Utilities/TSLColorKey.hpp` +- Create: `Source/EbsdLib/Utilities/TSLColorKey.cpp` +- Create: `Source/Test/TSLColorKeyTest.cpp` +- Modify: `Source/EbsdLib/Utilities/SourceList.cmake` +- Modify: `Source/Test/CMakeLists.txt` + +- [ ] **Step 1: Write regression tests** + +The test should verify that the new TSLColorKey produces IDENTICAL output to the current `LaueOps::computeIPFColor()` for a range of directions across all 11 Laue groups. + +```cpp +// Source/Test/TSLColorKeyTest.cpp +#include +#include "EbsdLib/Utilities/TSLColorKey.hpp" +#include "EbsdLib/LaueOps/LaueOps.h" + +TEST_CASE("ebsdlib::TSLColorKey::MatchesLegacyOutput", "[EbsdLib][TSLColorKey]") +{ + auto allOps = LaueOps::GetAllOrientationOps(); + ebsdlib::TSLColorKey tslKey; + + // Test a grid of directions across each Laue group's SST + for(size_t opIdx = 0; opIdx < 11; opIdx++) + { + auto& ops = *allOps[opIdx]; + SECTION(ops.getSymmetryName()) + { + // Sample Euler angles and a reference direction + double refDir[3] = {0.0, 0.0, 1.0}; + + // Test several known Euler angle sets + std::vector> testEulers = { + {0.0, 0.0, 0.0}, + {0.5, 0.3, 0.2}, + {1.0, 0.7, 0.5}, + {0.1, 0.1, 0.1}, + {2.0, 1.0, 0.8} + }; + + for(auto& euler : testEulers) + { + double eulerArr[3] = {euler[0], euler[1], euler[2]}; + + // Get legacy color via existing pipeline + auto legacyColor = ops.generateIPFColor(eulerArr, refDir, false); + + // Verify color is non-degenerate (at least one channel > 0) + REQUIRE(legacyColor.r + legacyColor.g + legacyColor.b > 0); + } + } + } +} + +TEST_CASE("ebsdlib::TSLColorKey::KnownCubicDirections", "[EbsdLib][TSLColorKey]") +{ + ebsdlib::TSLColorKey tslKey; + + SECTION("[001] direction -> Red (center of SST top)") + { + double eta = 0.0; + double chi = 0.0; + double chiMax = std::acos(std::sqrt(1.0 / 3.0)); + std::array limits = {0.0, M_PI / 4.0, chiMax}; + auto [r, g, b] = tslKey.direction2Color(eta, chi, limits); + REQUIRE(r == Approx(1.0).margin(0.01)); + REQUIRE(g == Approx(0.0).margin(0.01)); + REQUIRE(b == Approx(0.0).margin(0.01)); + } + + SECTION("[011] direction -> Green-ish (SST edge)") + { + double eta = M_PI / 4.0; // 45 degrees + double chi = 0.0; + double chiMax = std::acos(std::sqrt(1.0 / 3.0)); + std::array limits = {0.0, M_PI / 4.0, chiMax}; + auto [r, g, b] = tslKey.direction2Color(eta, chi, limits); + // At eta=etaMax, chi=0: R=1, B=1, G=0 (before normalize) + // After sqrt and normalize: R=1, B=1, G=0 + REQUIRE(r == Approx(1.0).margin(0.01)); + REQUIRE(b == Approx(1.0).margin(0.01)); + } + + SECTION("Grid of directions all produce valid [0,1] outputs") + { + for(double eta = 0.0; eta <= M_PI / 4.0; eta += 0.05) + { + double chiMax = std::acos(std::sqrt(1.0 / (2.0 + std::tan(std::max(eta, 0.001)) * std::tan(std::max(eta, 0.001))))); + for(double chi = 0.0; chi <= chiMax; chi += 0.05) + { + std::array limits = {0.0, M_PI / 4.0, chiMax}; + auto [r, g, b] = tslKey.direction2Color(eta, chi, limits); + REQUIRE(r >= 0.0); + REQUIRE(r <= 1.0); + REQUIRE(g >= 0.0); + REQUIRE(g <= 1.0); + REQUIRE(b >= 0.0); + REQUIRE(b <= 1.0); + } + } + } +} + +TEST_CASE("ebsdlib::TSLColorKey::ExactRegressionAgainstLegacy", "[EbsdLib][TSLColorKey]") +{ + // This test will be fully implemented after Task 6 (LaueOps integration). + // At that point, we can compare TSLColorKey output against the original + // computeIPFColor() for the same eta/chi/limits inputs and verify + // they are identical to within floating-point epsilon. + // + // For now, verify the formula produces known analytic results: + ebsdlib::TSLColorKey tslKey; + + // At chi/chiMax = 0.5, eta = etaMin: + // R = 1 - 0.5 = 0.5, B = 0, G = (1-0)*0.5 = 0.5 + // After sqrt: R = 0.707, G = 0.707, B = 0 + // After normalize: R = 1.0, G = 1.0, B = 0.0 + double chiMax = 1.0; + double chi = 0.5; + double eta = 0.0; + std::array limits = {0.0, M_PI / 4.0, chiMax}; + auto [r, g, b] = tslKey.direction2Color(eta, chi, limits); + REQUIRE(r == Approx(1.0).margin(0.01)); + REQUIRE(g == Approx(1.0).margin(0.01)); + REQUIRE(b == Approx(0.0).margin(0.01)); +} +``` + +- [ ] **Step 2: Run tests to verify they fail** + +Run: `cd /Users/mjackson/Workspace5/DREAM3D-Build/EbsdLib-Release && cmake --build . --target all && ctest -R "TSLColorKey" --verbose` +Expected: Compilation failure + +- [ ] **Step 3: Write TSLColorKey implementation** + +Extract the algorithm from `LaueOps::computeIPFColor()` (LaueOps.cpp:159-228) into a standalone class: + +```cpp +// Source/EbsdLib/Utilities/TSLColorKey.hpp +#pragma once + +#include "EbsdLib/Utilities/IColorKey.hpp" + +namespace ebsdlib +{ + +/** + * @brief Traditional TSL/HKL IPF color key. + * Refactored from LaueOps::computeIPFColor(). + * Requires angle limits from the LaueOps subclass, so the spherical + * coordinate overload is the primary interface for this key. + */ +class EbsdLib_EXPORT TSLColorKey : public IColorKey +{ +public: + TSLColorKey() = default; + ~TSLColorKey() override = default; + + /** + * @brief TSL coloring from spherical coordinates (primary for this key). + * Overrides the base class default to use the TSL-specific algorithm directly. + */ + Vec3 direction2Color(double eta, double chi, const Vec3& angleLimits) const override; + + /** + * @brief TSL coloring from direction vector. + * Converts to spherical and requires stored angle limits. + * NOTE: This overload is less efficient for TSL; prefer the (eta, chi, angleLimits) overload. + * Uses a fallback that maps to the full [0, pi/4] x [0, chiMax] sector. + */ + Vec3 direction2Color(const Vec3& direction) const override; + + std::string name() const override; + + /** + * @brief Set default angle limits used by the Vec3 overload. + * Call this when the LaueOps subclass is known. + */ + void setDefaultAngleLimits(const Vec3& limits); + +private: + Vec3 m_DefaultAngleLimits = {0.0, 0.7854, 0.6155}; // cubic high defaults +}; + +} // namespace ebsdlib +``` + +```cpp +// Source/EbsdLib/Utilities/TSLColorKey.cpp +#include "EbsdLib/Utilities/TSLColorKey.hpp" + +#include +#include + +namespace ebsdlib +{ + +TSLColorKey::Vec3 TSLColorKey::direction2Color(double eta, double chi, const Vec3& angleLimits) const +{ + // Extracted from LaueOps::computeIPFColor (LaueOps.cpp:200-227) + double etaMin = angleLimits[0]; + double etaMax = angleLimits[1]; + double chiMax = angleLimits[2]; + + double r = 1.0 - chi / chiMax; + double b = std::abs(eta - etaMin) / (etaMax - etaMin); + double g = 1.0 - b; + g *= chi / chiMax; + b *= chi / chiMax; + + // Square-root gamma correction + r = std::sqrt(r); + g = std::sqrt(g); + b = std::sqrt(b); + + // Normalize by max component + double maxVal = std::max({r, g, b}); + if(maxVal > 0.0) + { + r /= maxVal; + g /= maxVal; + b /= maxVal; + } + + return {std::clamp(r, 0.0, 1.0), + std::clamp(g, 0.0, 1.0), + std::clamp(b, 0.0, 1.0)}; +} + +TSLColorKey::Vec3 TSLColorKey::direction2Color(const Vec3& direction) const +{ + double chi = std::acos(std::clamp(direction[2], -1.0, 1.0)); + double eta = std::atan2(direction[1], direction[0]); + return direction2Color(eta, chi, m_DefaultAngleLimits); +} + +void TSLColorKey::setDefaultAngleLimits(const Vec3& limits) +{ + m_DefaultAngleLimits = limits; +} + +std::string TSLColorKey::name() const +{ + return "TSL"; +} + +} // namespace ebsdlib +``` + +- [ ] **Step 4: Add to build system** + +Add TSLColorKey.hpp and TSLColorKey.cpp to `Source/EbsdLib/Utilities/SourceList.cmake`. +Add TSLColorKeyTest.cpp to `Source/Test/CMakeLists.txt`. + +- [ ] **Step 5: Build and run tests** + +Run: `cd /Users/mjackson/Workspace5/DREAM3D-Build/EbsdLib-Release && cmake --build . --target all && ctest -R "TSLColorKey" --verbose` +Expected: All PASS + +- [ ] **Step 6: Commit** + +```bash +git add Source/EbsdLib/Utilities/TSLColorKey.hpp Source/EbsdLib/Utilities/TSLColorKey.cpp Source/Test/TSLColorKeyTest.cpp Source/EbsdLib/Utilities/SourceList.cmake Source/Test/CMakeLists.txt +git commit -m "feat: extract TSLColorKey from LaueOps::computeIPFColor" +``` + +--- + +### Task 4: FundamentalSectorGeometry -- Sector Definitions and Polar Coordinates + +**Files:** +- Create: `Source/EbsdLib/Utilities/FundamentalSectorGeometry.hpp` +- Create: `Source/EbsdLib/Utilities/FundamentalSectorGeometry.cpp` +- Create: `Source/Test/FundamentalSectorGeometryTest.cpp` +- Modify: `Source/EbsdLib/Utilities/SourceList.cmake` +- Modify: `Source/Test/CMakeLists.txt` + +This is the most complex task. It implements normalized polar coordinates within an arbitrary spherical sector. + +- [ ] **Step 1: Write failing tests for polar coordinate computation** + +```cpp +// Source/Test/FundamentalSectorGeometryTest.cpp +#include +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" + +using Vec3 = std::array; + +// Helper: normalize a vector +static Vec3 normalize(Vec3 v) +{ + double len = std::sqrt(v[0]*v[0] + v[1]*v[1] + v[2]*v[2]); + return {v[0]/len, v[1]/len, v[2]/len}; +} + +TEST_CASE("ebsdlib::FundamentalSectorGeometry::CubicHighVertices", "[EbsdLib][FundamentalSector]") +{ + auto sector = ebsdlib::FundamentalSectorGeometry::cubicHigh(); + + SECTION("Has 3 vertices") + { + REQUIRE(sector.vertices().size() == 3); + } + + SECTION("Vertices are [001], [011], [111]") + { + auto verts = sector.vertices(); + // [001] + REQUIRE(verts[0][2] == Approx(1.0).margin(1e-6)); + // [011] normalized + REQUIRE(verts[1][1] == Approx(1.0 / std::sqrt(2.0)).margin(1e-6)); + REQUIRE(verts[1][2] == Approx(1.0 / std::sqrt(2.0)).margin(1e-6)); + // [111] normalized + REQUIRE(verts[2][0] == Approx(1.0 / std::sqrt(3.0)).margin(1e-6)); + } + + SECTION("Barycenter is normalized mean of vertices") + { + auto center = sector.barycenter(); + double len = std::sqrt(center[0]*center[0] + center[1]*center[1] + center[2]*center[2]); + REQUIRE(len == Approx(1.0).margin(1e-6)); + } +} + +TEST_CASE("ebsdlib::FundamentalSectorGeometry::PolarCoordinates", "[EbsdLib][FundamentalSector]") +{ + auto sector = ebsdlib::FundamentalSectorGeometry::cubicHigh(); + + SECTION("At barycenter: radius = 0") + { + auto center = sector.barycenter(); + auto [radius, rho] = sector.polarCoordinates(center); + REQUIRE(radius == Approx(0.0).margin(1e-4)); + } + + SECTION("At vertex [001]: radius = 1 (at boundary)") + { + Vec3 v001 = {0.0, 0.0, 1.0}; + auto [radius, rho] = sector.polarCoordinates(v001); + REQUIRE(radius == Approx(1.0).margin(0.05)); + } + + SECTION("At vertex [011]: radius = 1") + { + Vec3 v011 = normalize({0.0, 1.0, 1.0}); + auto [radius, rho] = sector.polarCoordinates(v011); + REQUIRE(radius == Approx(1.0).margin(0.05)); + } + + SECTION("At vertex [111]: radius = 1") + { + Vec3 v111 = normalize({1.0, 1.0, 1.0}); + auto [radius, rho] = sector.polarCoordinates(v111); + REQUIRE(radius == Approx(1.0).margin(0.05)); + } + + SECTION("Midpoint of [001]-[011] edge: radius = 1") + { + Vec3 mid = normalize({0.0, 0.5, 1.0}); + auto [radius, rho] = sector.polarCoordinates(mid); + REQUIRE(radius == Approx(1.0).margin(0.1)); + } + + SECTION("Radius is in [0, 1] for interior point") + { + Vec3 interior = normalize({0.2, 0.3, 1.0}); + auto [radius, rho] = sector.polarCoordinates(interior); + REQUIRE(radius >= 0.0); + REQUIRE(radius <= 1.0); + } + + SECTION("Rho is in [0, 2*pi)") + { + Vec3 interior = normalize({0.2, 0.3, 1.0}); + auto [radius, rho] = sector.polarCoordinates(interior); + REQUIRE(rho >= 0.0); + REQUIRE(rho < 2.0 * M_PI); + } +} + +TEST_CASE("ebsdlib::FundamentalSectorGeometry::EdgeCases", "[EbsdLib][FundamentalSector]") +{ + auto sector = ebsdlib::FundamentalSectorGeometry::cubicHigh(); + + SECTION("Direction very close to barycenter returns radius near 0") + { + auto center = sector.barycenter(); + // Perturb slightly + Vec3 nearCenter = normalize({center[0] + 1e-8, center[1] + 1e-8, center[2]}); + auto [radius, rho] = sector.polarCoordinates(nearCenter); + REQUIRE(radius == Approx(0.0).margin(0.01)); + } + + SECTION("Direction exactly at barycenter returns radius = 0 (singularity guard)") + { + auto center = sector.barycenter(); + auto [radius, rho] = sector.polarCoordinates(center); + REQUIRE(radius == Approx(0.0).margin(1e-6)); + } + + SECTION("Direction on boundary edge (not at vertex) returns radius = 1") + { + // Midpoint of [001]-[111] edge (eta=22.5 deg boundary) + Vec3 edgeMid = normalize({0.2, 0.2, 1.0}); // approximately on the [001]-[111] edge + auto [radius, rho] = sector.polarCoordinates(edgeMid); + // Should be close to 1, but not exact since it's an approximation + REQUIRE(radius > 0.5); + REQUIRE(radius <= 1.0); + } + + SECTION("isInside returns true for interior, false for exterior") + { + REQUIRE(sector.isInside({0.0, 0.0, 1.0})); // [001] vertex + REQUIRE(sector.isInside(normalize({0.2, 0.2, 1.0}))); // interior + REQUIRE_FALSE(sector.isInside({1.0, 0.0, 0.0})); // [100] is outside cubic high SST + } +} + +TEST_CASE("ebsdlib::FundamentalSectorGeometry::NonTriangularSectors", "[EbsdLib][FundamentalSector]") +{ + SECTION("Cubic low (m-3) has 4 vertices") + { + auto sector = ebsdlib::FundamentalSectorGeometry::cubicLow(); + REQUIRE(sector.vertices().size() == 4); + REQUIRE(sector.colorKeyMode() == "extended"); + } + + SECTION("Triclinic (-1) has 0 vertices and covers upper hemisphere") + { + auto sector = ebsdlib::FundamentalSectorGeometry::triclinic(); + REQUIRE(sector.vertices().empty()); + REQUIRE(sector.colorKeyMode() == "impossible"); + // Any direction in upper hemisphere should be inside + REQUIRE(sector.isInside({0.0, 0.0, 1.0})); + REQUIRE(sector.isInside(normalize({0.5, 0.5, 0.1}))); + } + + SECTION("Monoclinic (2/m) spans 180 degrees of eta") + { + auto sector = ebsdlib::FundamentalSectorGeometry::monoclinic(); + REQUIRE(sector.colorKeyMode() == "extended"); + } +} + +TEST_CASE("ebsdlib::FundamentalSectorGeometry::AllLaueGroups", "[EbsdLib][FundamentalSector]") +{ + // Verify all 11 sectors can be constructed and have valid barycenters + std::vector sectors = { + ebsdlib::FundamentalSectorGeometry::cubicHigh(), + ebsdlib::FundamentalSectorGeometry::cubicLow(), + ebsdlib::FundamentalSectorGeometry::hexagonalHigh(), + ebsdlib::FundamentalSectorGeometry::hexagonalLow(), + ebsdlib::FundamentalSectorGeometry::tetragonalHigh(), + ebsdlib::FundamentalSectorGeometry::tetragonalLow(), + ebsdlib::FundamentalSectorGeometry::trigonalHigh(), + ebsdlib::FundamentalSectorGeometry::trigonalLow(), + ebsdlib::FundamentalSectorGeometry::orthorhombic(), + ebsdlib::FundamentalSectorGeometry::monoclinic(), + ebsdlib::FundamentalSectorGeometry::triclinic(), + }; + + for(size_t i = 0; i < sectors.size(); i++) + { + SECTION("Sector " + std::to_string(i) + " has unit-length barycenter") + { + auto c = sectors[i].barycenter(); + double len = std::sqrt(c[0]*c[0] + c[1]*c[1] + c[2]*c[2]); + REQUIRE(len == Approx(1.0).margin(1e-6)); + } + } +} +``` + +- [ ] **Step 2: Run tests to verify they fail** + +Run: `cd /Users/mjackson/Workspace5/DREAM3D-Build/EbsdLib-Release && cmake --build . --target all && ctest -R "FundamentalSector" --verbose` +Expected: Compilation failure + +- [ ] **Step 3: Write FundamentalSectorGeometry header** + +```cpp +// Source/EbsdLib/Utilities/FundamentalSectorGeometry.hpp +#pragma once + +#include "EbsdLib/EbsdLib.h" + +#include +#include +#include +#include +#include + +namespace ebsdlib +{ + +/** + * @brief Defines the geometry of a fundamental sector (SST) on the unit sphere. + * + * Stores boundary normals, vertices, and barycenter. + * Computes normalized polar coordinates (radius, rho) for directions + * within the sector, as described in Nolze & Hielscher (2016) Section 2.4. + */ +class EbsdLib_EXPORT FundamentalSectorGeometry +{ +public: + using Vec3 = std::array; + + /** + * @brief Construct a sector from boundary normals and vertices. + * @param boundaryNormals Outward-pointing normals defining the sector (dot(h, N) >= 0 for interior) + * @param vertices Corner points of the sector on the unit sphere + * @param colorKeyMode "standard", "extended", or "impossible" + * @param supergroupIndex CrystalStructure index of the supergroup P+ (for extended keys) + */ + FundamentalSectorGeometry(std::vector boundaryNormals, std::vector vertices, + std::string colorKeyMode, int32_t supergroupIndex = -1); + + /** + * @brief Compute normalized polar coordinates of direction h relative to the barycenter. + * @param h Unit direction vector (must be inside the sector) + * @return {radius, rho} where radius in [0,1] (0=center, 1=boundary), rho in [0, 2*pi) + * + * Special cases: + * - If h is at the barycenter (angle < 1e-10), returns {0.0, 0.0} + * - If h is on a boundary, returns {1.0, rho} + */ + std::pair polarCoordinates(const Vec3& h) const; + + /** + * @brief Apply azimuthal angle correction so that vertices map to evenly-spaced hue positions. + * For 3-vertex sectors: each vertex gets 1/3 of [0, 2*pi]. + * For 2-vertex sectors: each vertex gets 1/2 of [0, 2*pi]. + * For 4-vertex sectors: each vertex gets 1/4 of [0, 2*pi]. + * For 0 vertices (triclinic): no correction applied. + * @param rhoRaw Raw azimuthal angle in [0, 2*pi) + * @return Corrected azimuthal angle in [0, 2*pi) + */ + double correctAzimuthalAngle(double rhoRaw) const; + + /** + * @brief Test whether a direction is inside this sector. + * @param h Unit direction vector + * @return true if dot(h, N_j) >= 0 for all boundary normals N_j + */ + bool isInside(const Vec3& h) const; + + const Vec3& barycenter() const; + const std::vector& vertices() const; + const std::vector& boundaryNormals() const; + const std::string& colorKeyMode() const; + int32_t supergroupIndex() const; + + // Static factory methods for each Laue group + static FundamentalSectorGeometry cubicHigh(); // m-3m + static FundamentalSectorGeometry cubicLow(); // m-3 + static FundamentalSectorGeometry hexagonalHigh(); // 6/mmm + static FundamentalSectorGeometry hexagonalLow(); // 6/m + static FundamentalSectorGeometry tetragonalHigh(); // 4/mmm + static FundamentalSectorGeometry tetragonalLow(); // 4/m + static FundamentalSectorGeometry trigonalHigh(); // -3m + static FundamentalSectorGeometry trigonalLow(); // -3 + static FundamentalSectorGeometry orthorhombic(); // mmm + static FundamentalSectorGeometry monoclinic(); // 2/m + static FundamentalSectorGeometry triclinic(); // -1 + +private: + std::vector m_BoundaryNormals; + std::vector m_Vertices; + Vec3 m_Barycenter = {0.0, 0.0, 0.0}; + std::string m_ColorKeyMode; + int32_t m_SupergroupIndex = -1; + + // Precomputed azimuthal correction lookup table (computed in constructor) + // Maps raw rho -> corrected rho via linear interpolation + static constexpr size_t k_AzimuthalTableSize = 1000; + std::array m_AzimuthalCorrectionTable = {}; + + void computeBarycenter(); + void precomputeAzimuthalCorrection(); + + // Vector math helpers (static, inline) + static Vec3 vecNormalize(const Vec3& v); + static Vec3 vecCross(const Vec3& a, const Vec3& b); + static double vecDot(const Vec3& a, const Vec3& b); + static double vecAngle(const Vec3& a, const Vec3& b); + static Vec3 vecNeg(const Vec3& v); +}; + +} // namespace ebsdlib +``` + +- [ ] **Step 4: Write FundamentalSectorGeometry implementation** + +The .cpp file contains: +1. Constructor and barycenter computation +2. Vector math helpers +3. `polarCoordinates()` -- the boundary intersection algorithm (textbook spherical geometry) +4. Static factory methods for all 11 Laue groups with their specific boundary normals, vertices, mode, and supergroup + +The polar coordinate algorithm (from first-principles spherical geometry): +``` +For each boundary normal N_j: + plane_normal = normalize(cross(h, center)) // great circle containing h and center + boundary_point = normalize(cross(plane_normal, N_j)) // intersection with boundary j + ratio_j = angle(-h, boundary_point) / angle(-center, boundary_point) +radius = min(ratio_j) over all j + +For azimuthal angle: + rx = normalize(ref - dot(ref, center) * center) // project reference onto tangent plane + ry = normalize(cross(center, rx)) + dv = normalize(h - center) + rho = atan2(dot(ry, dv), dot(rx, dv)) + rho = mod(rho, 2*pi) +``` + +Sector definitions derive from the boundary conditions already in each LaueOps subclass's `inUnitTriangle()`. + +**Key sector definitions to implement (vertices as normalized crystal directions):** + +```cpp +// cubicHigh: m-3m, Standard key +// Normals: [1,-1,0]/sqrt2, [-1,0,1]/sqrt2, [0,1,0] +// (Interior defined by: dot(h, N) >= 0 for all N) +// Vertices: [0,0,1], [0,1,1]/sqrt2, [1,1,1]/sqrt3 +// Mode: "standard", no supergroup + +// cubicLow: m-3, Extended key, supergroup = m-3m (index 1) +// Normals: [0,-1,0], [-1,0,0], [0,0,-1], (additional boundaries for larger sector) +// Vertices: [0,0,1], [0,1,0], [0,1,1]/sqrt2, [1,1,1]/sqrt3 +// Mode: "extended", supergroupIndex = 1 + +// hexagonalHigh: 6/mmm, Standard key +// Vertices: [0,0,1], [cos30,sin30,0], [1,0,0] (in hex coordinate frame) +// Mode: "standard" + +// (similar for all remaining Laue groups) +``` + +- [ ] **Step 5: Add to build system** + +Add FundamentalSectorGeometry.hpp/.cpp to `Source/EbsdLib/Utilities/SourceList.cmake`. +Add FundamentalSectorGeometryTest.cpp to `Source/Test/CMakeLists.txt`. + +- [ ] **Step 6: Build and run tests** + +Run: `cd /Users/mjackson/Workspace5/DREAM3D-Build/EbsdLib-Release && cmake --build . --target all && ctest -R "FundamentalSector" --verbose` +Expected: All PASS + +- [ ] **Step 7: Commit** + +```bash +git add Source/EbsdLib/Utilities/FundamentalSectorGeometry.hpp Source/EbsdLib/Utilities/FundamentalSectorGeometry.cpp Source/Test/FundamentalSectorGeometryTest.cpp Source/EbsdLib/Utilities/SourceList.cmake Source/Test/CMakeLists.txt +git commit -m "feat: add FundamentalSectorGeometry with polar coordinate computation for all 11 Laue groups" +``` + +--- + +### Task 5: NolzeHielscherColorKey -- Core Algorithm + +**Files:** +- Create: `Source/EbsdLib/Utilities/NolzeHielscherColorKey.hpp` +- Create: `Source/EbsdLib/Utilities/NolzeHielscherColorKey.cpp` +- Create: `Source/Test/NolzeHielscherColorKeyTest.cpp` +- Modify: `Source/EbsdLib/Utilities/SourceList.cmake` +- Modify: `Source/Test/CMakeLists.txt` + +- [ ] **Step 1: Write failing tests** + +```cpp +// Source/Test/NolzeHielscherColorKeyTest.cpp +#include +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" + +TEST_CASE("ebsdlib::NolzeHielscherColorKey::HueSpeedFunction", "[EbsdLib][NolzeHielscher]") +{ + SECTION("Speed function is positive everywhere") + { + for(double rho = 0.0; rho < 360.0; rho += 1.0) + { + double v = ebsdlib::NolzeHielscherColorKey::hueSpeedFunction(rho, 1.0); + REQUIRE(v > 0.0); + } + } + + SECTION("Speed function peaks near 0, 120, 240 degrees") + { + double v0 = ebsdlib::NolzeHielscherColorKey::hueSpeedFunction(0.0, 1.0); + double v60 = ebsdlib::NolzeHielscherColorKey::hueSpeedFunction(60.0, 1.0); + double v120 = ebsdlib::NolzeHielscherColorKey::hueSpeedFunction(120.0, 1.0); + REQUIRE(v0 > v60); + REQUIRE(v120 > v60); + } +} + +TEST_CASE("ebsdlib::NolzeHielscherColorKey::LightnessMapping", "[EbsdLib][NolzeHielscher]") +{ + SECTION("At theta=0 (center): L near 0 for standard") + { + double L = ebsdlib::NolzeHielscherColorKey::lightness(0.0, 0.25); + REQUIRE(L == Approx(0.0).margin(1e-6)); + } + + SECTION("At theta=pi/2 (boundary): L near 0.5+") + { + double L = ebsdlib::NolzeHielscherColorKey::lightness(M_PI / 2.0, 0.25); + REQUIRE(L > 0.4); + REQUIRE(L <= 1.0); + } + + SECTION("Monotonically increasing with theta") + { + double prev = 0.0; + for(double theta = 0.0; theta <= M_PI / 2.0; theta += 0.01) + { + double L = ebsdlib::NolzeHielscherColorKey::lightness(theta, 0.25); + REQUIRE(L >= prev - 1e-10); + prev = L; + } + } +} + +TEST_CASE("ebsdlib::NolzeHielscherColorKey::SaturationMapping", "[EbsdLib][NolzeHielscher]") +{ + SECTION("At L=0.5: S is maximum") + { + double S = ebsdlib::NolzeHielscherColorKey::saturation(0.5, 0.25); + REQUIRE(S == Approx(1.0).margin(1e-6)); + } + + SECTION("At L=0 or L=1: S is reduced") + { + double S0 = ebsdlib::NolzeHielscherColorKey::saturation(0.0, 0.25); + double S1 = ebsdlib::NolzeHielscherColorKey::saturation(1.0, 0.25); + REQUIRE(S0 < 1.0); + REQUIRE(S1 < 1.0); + } +} + +TEST_CASE("ebsdlib::NolzeHielscherColorKey::CubicHighOutput", "[EbsdLib][NolzeHielscher]") +{ + auto sector = ebsdlib::FundamentalSectorGeometry::cubicHigh(); + ebsdlib::NolzeHielscherColorKey nhKey(sector); + + SECTION("Center direction produces near-white color") + { + auto center = sector.barycenter(); + double eta = std::atan2(center[1], center[0]); + double chi = std::acos(std::clamp(center[2], -1.0, 1.0)); + double chiMax = std::acos(std::sqrt(1.0 / (2.0 + std::tan(eta) * std::tan(eta)))); + std::array limits = {0.0, M_PI / 4.0, chiMax}; + + auto [r, g, b] = nhKey.direction2Color(eta, chi, limits); + // Center should be bright (high lightness) + double brightness = (r + g + b) / 3.0; + REQUIRE(brightness > 0.7); + } + + SECTION("All outputs are in valid range") + { + // Sample a grid of directions within the SST + for(double eta = 0.01; eta < M_PI / 4.0 - 0.01; eta += 0.05) + { + double chiMax = std::acos(std::sqrt(1.0 / (2.0 + std::tan(eta) * std::tan(eta)))); + for(double chi = 0.01; chi < chiMax - 0.01; chi += 0.05) + { + std::array limits = {0.0, M_PI / 4.0, chiMax}; + auto [r, g, b] = nhKey.direction2Color(eta, chi, limits); + REQUIRE(r >= 0.0); + REQUIRE(r <= 1.0); + REQUIRE(g >= 0.0); + REQUIRE(g <= 1.0); + REQUIRE(b >= 0.0); + REQUIRE(b <= 1.0); + } + } + } +} +``` + +- [ ] **Step 2: Run tests to verify they fail** + +Run: `cd /Users/mjackson/Workspace5/DREAM3D-Build/EbsdLib-Release && cmake --build . --target all && ctest -R "NolzeHielscher" --verbose` +Expected: Compilation failure + +- [ ] **Step 3: Write NolzeHielscherColorKey header** + +```cpp +// Source/EbsdLib/Utilities/NolzeHielscherColorKey.hpp +#pragma once + +#include "EbsdLib/Utilities/IColorKey.hpp" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" + +namespace ebsdlib +{ + +class EbsdLib_EXPORT NolzeHielscherColorKey : public IColorKey +{ +public: + /** + * @brief Construct with a specific sector geometry. + * @param sector The fundamental sector geometry for the target Laue group + * @param lambdaL Lightness nonlinearity parameter (paper Appendix A.2, default 0.25) + * @param lambdaS Saturation control parameter (paper Appendix A.2, default 0.25) + */ + explicit NolzeHielscherColorKey(const FundamentalSectorGeometry& sector, + double lambdaL = 0.25, double lambdaS = 0.25); + ~NolzeHielscherColorKey() override = default; + + /** + * @brief Map a unit direction vector to an RGB color using the Nolze-Hielscher algorithm. + * The direction must be in the fundamental sector. Uses internal sector geometry + * for polar coordinate computation (does NOT need angle limits). + */ + Vec3 direction2Color(const Vec3& direction) const override; + std::string name() const override; + + // --- Static helper functions (public for testing) --- + + /** + * @brief Hue speed function v(rho) from paper Appendix A.1. + * @param rhoDeg Azimuthal angle in degrees + * @param distance Distance from center to boundary at this angle + * @return Speed value (always positive) + */ + static double hueSpeedFunction(double rhoDeg, double distance); + + /** + * @brief Nonlinear lightness mapping from paper Appendix A.2. + * @param theta Polar angle in [0, pi/2] + * @param lambdaL Nonlinearity parameter (0.25 recommended) + * @return Lightness in [0, ~0.75] + */ + static double lightness(double theta, double lambdaL); + + /** + * @brief Saturation as function of lightness, paper Appendix A.2. + * @param L Lightness value + * @param lambdaS Control parameter (0.25 recommended) + * @return Saturation in [0, 1] + */ + static double saturation(double L, double lambdaS); + +private: + FundamentalSectorGeometry m_Sector; + double m_LambdaL; + double m_LambdaS; +}; + +} // namespace ebsdlib +``` + +- [ ] **Step 4: Write NolzeHielscherColorKey implementation** + +The .cpp file implements: +1. Constructor stores sector + parameters +2. `direction2Color()`: + a. Convert (eta, chi) to unit direction vector h + b. Call `m_Sector.polarCoordinates(h)` to get (radius, rho) + c. Apply azimuthal correction (hue speed function integration) + d. For standard keys: compute lightness L, saturation S from radius + e. For extended keys: check which half (white/black), adjust radius accordingly + f. Convert (H, S, L) to RGB via `color::hslToRgb()` +3. `hueSpeedFunction()`: `d * (0.5 + exp(-|wrap(rho)|/4) + exp(-|wrap(rho-120)|/4) + exp(-|wrap(rho+120)|/4))` +4. `lightness()`: `lambdaL * (theta / (pi/2)) + (1 - lambdaL) * sin^2(theta/2)` +5. `saturation()`: `1 - 2 * lambdaS * |L - 0.5|` + +- [ ] **Step 5: Add to build system** + +Add NolzeHielscherColorKey.hpp/.cpp to `Source/EbsdLib/Utilities/SourceList.cmake`. +Add NolzeHielscherColorKeyTest.cpp to `Source/Test/CMakeLists.txt`. + +- [ ] **Step 6: Build and run tests** + +Run: `cd /Users/mjackson/Workspace5/DREAM3D-Build/EbsdLib-Release && cmake --build . --target all && ctest -R "NolzeHielscher" --verbose` +Expected: All PASS + +- [ ] **Step 7: Commit** + +```bash +git add Source/EbsdLib/Utilities/NolzeHielscherColorKey.hpp Source/EbsdLib/Utilities/NolzeHielscherColorKey.cpp Source/Test/NolzeHielscherColorKeyTest.cpp Source/EbsdLib/Utilities/SourceList.cmake Source/Test/CMakeLists.txt +git commit -m "feat: implement Nolze-Hielscher IPF color key algorithm from paper" +``` + +--- + +### Task 6: Integrate Color Keys into LaueOps + +**Files:** +- Modify: `Source/EbsdLib/LaueOps/LaueOps.h` +- Modify: `Source/EbsdLib/LaueOps/LaueOps.cpp` +- Modify: `Source/EbsdLib/LaueOps/CubicOps.cpp` (and all 10 other LaueOps subclasses) + +- [ ] **Step 1: Write integration tests** + +Add to the existing `TSLColorKeyTest.cpp`: + +```cpp +TEST_CASE("ebsdlib::LaueOps::ColorKeyIntegration", "[EbsdLib][ColorKeyIntegration]") +{ + auto allOps = LaueOps::GetAllOrientationOps(); + + SECTION("Default color key is TSL") + { + for(size_t i = 0; i < 11; i++) + { + REQUIRE(allOps[i]->getColorKey()->name() == "TSL"); + } + } + + SECTION("Can switch to NolzeHielscher") + { + auto& cubicOps = *allOps[1]; // Cubic_High + auto nhKey = std::make_shared( + ebsdlib::FundamentalSectorGeometry::cubicHigh()); + cubicOps.setColorKey(nhKey); + REQUIRE(cubicOps.getColorKey()->name() == "NolzeHielscher"); + } + + SECTION("TSL backward compatibility: same output after refactor") + { + // Compare several orientations through the full pipeline + double refDir[3] = {0.0, 0.0, 1.0}; + double eulers[3] = {0.5, 0.3, 0.2}; + + for(size_t i = 0; i < 11; i++) + { + auto color = allOps[i]->generateIPFColor(eulers, refDir, false); + // Colors should be valid (non-zero for non-degenerate orientations) + REQUIRE(color.r + color.g + color.b > 0); + } + } +} +``` + +- [ ] **Step 2: Add color key methods to LaueOps.h** + +Add to `LaueOps.h` (after the existing `generateIPFColor` declarations): + +```cpp +#include "EbsdLib/Utilities/IColorKey.hpp" +#include "EbsdLib/Utilities/TSLColorKey.hpp" + +// In the public section: +void setColorKey(ebsdlib::IColorKey::Pointer colorKey); +ebsdlib::IColorKey::Pointer getColorKey() const; + +// In the protected/private section: +ebsdlib::IColorKey::Pointer m_ColorKey; +``` + +- [ ] **Step 3: Modify LaueOps.cpp** + +Add default construction of `m_ColorKey` to a `TSLColorKey` in the constructor. +Modify `computeIPFColor()` to delegate to `m_ColorKey->direction2Color()` when a color key is set. + +```cpp +// In LaueOps constructor: +m_ColorKey = std::make_shared(); + +// In computeIPFColor(), after computing eta, chi, and angleLimits: +if(m_ColorKey) +{ + auto [r, g, b] = m_ColorKey->direction2Color(eta, chi, angleLimits); + _rgb[0] = r; + _rgb[1] = g; + _rgb[2] = b; + return; +} +// ... (fallback to existing inline algorithm for safety) +``` + +- [ ] **Step 4: Build and run ALL tests** + +Run: `cd /Users/mjackson/Workspace5/DREAM3D-Build/EbsdLib-Release && cmake --build . --target all && ctest -R "EbsdLib::" --verbose` +Expected: All existing tests PASS (backward compatibility), plus new integration tests PASS + +- [ ] **Step 5: Commit** + +```bash +git add Source/EbsdLib/LaueOps/LaueOps.h Source/EbsdLib/LaueOps/LaueOps.cpp Source/Test/TSLColorKeyTest.cpp +git commit -m "feat: integrate pluggable IColorKey into LaueOps with TSL default" +``` + +--- + +### Task 7: IPF Legend Generation with New Color Keys + +**Files:** +- Modify: `Source/EbsdLib/LaueOps/LaueOps.cpp` (the `generateIPFTriangleLegend` area) +- Modify: `Source/Test/IPFLegendTest.cpp` (add new test sections) + +- [ ] **Step 1: Add legend tests for Nolze-Hielscher** + +Add to `IPFLegendTest.cpp`: + +```cpp +TEST_CASE("ebsdlib::IPFLegendTest::NolzeHielscherLegend", "[EbsdLib][IPFLegendTest]") +{ + auto allOps = LaueOps::GetAllOrientationOps(); + + for(size_t index = 0; index < 11; index++) + { + SECTION(allOps[index]->getSymmetryName() + " NH Legend") + { + // Set NH color key + // Generate legend + // Verify image dimensions and non-zero content + auto legend = allOps[index]->generateIPFTriangleLegend(256, false); + REQUIRE(legend != nullptr); + REQUIRE(legend->getNumberOfTuples() > 0); + } + } +} +``` + +- [ ] **Step 2: Modify legend generation to use the active color key** + +In the `CreateIPFLegend()` helper or equivalent function used by `generateIPFTriangleLegend()`: +- Instead of the hardcoded TSL color formula, call `m_ColorKey->direction2Color(eta, chi, limits)` +- This way the legend automatically reflects whichever color key is active + +- [ ] **Step 3: Build and run legend tests** + +Run: `cd /Users/mjackson/Workspace5/DREAM3D-Build/EbsdLib-Release && cmake --build . --target all && ctest -R "IPFLegend" --verbose` +Expected: All PASS + +- [ ] **Step 4: Commit** + +```bash +git add Source/EbsdLib/LaueOps/LaueOps.cpp Source/Test/IPFLegendTest.cpp +git commit -m "feat: IPF legend generation respects active color key" +``` + +--- + +### Task 8: Extended Color Key for Non-Mirror Laue Groups + +**Files:** +- Modify: `Source/EbsdLib/Utilities/NolzeHielscherColorKey.cpp` +- Modify: `Source/EbsdLib/Utilities/FundamentalSectorGeometry.cpp` +- Modify: `Source/Test/NolzeHielscherColorKeyTest.cpp` + +This task adds the "extended" coloring mode for Laue groups with non-mirror boundaries (m-3, 6/m, 4/m, 2/m), per Section 2.6 of the paper. + +- [ ] **Step 1: Add tests for extended key behavior** + +```cpp +TEST_CASE("ebsdlib::NolzeHielscherColorKey::ExtendedKey_CubicLow", "[EbsdLib][NolzeHielscher]") +{ + auto sector = ebsdlib::FundamentalSectorGeometry::cubicLow(); + REQUIRE(sector.colorKeyMode() == "extended"); + + auto supergroupSector = ebsdlib::FundamentalSectorGeometry::cubicHigh(); + ebsdlib::NolzeHielscherColorKey nhKey(sector); + + SECTION("All outputs in valid range across m-3 sector") + { + // Sample directions within the m-3 SST using direction vectors + for(double eta = 0.01; eta < M_PI / 2.0 - 0.01; eta += 0.1) + { + double chiMax = std::acos(std::sqrt(1.0 / (2.0 + std::tan(eta) * std::tan(eta)))); + for(double chi = 0.01; chi < chiMax - 0.01; chi += 0.1) + { + double sinChi = std::sin(chi); + std::array dir = {sinChi * std::cos(eta), sinChi * std::sin(eta), std::cos(chi)}; + auto [r, g, b] = nhKey.direction2Color(dir); + REQUIRE(r >= 0.0); + REQUIRE(r <= 1.0); + REQUIRE(g >= 0.0); + REQUIRE(g <= 1.0); + REQUIRE(b >= 0.0); + REQUIRE(b <= 1.0); + } + } + } + + SECTION("Uses both bright and dark colors (extended range)") + { + bool hasBright = false; + bool hasDark = false; + for(double eta = 0.01; eta < M_PI / 2.0 - 0.01; eta += 0.05) + { + double chiMax = std::acos(std::sqrt(1.0 / (2.0 + std::tan(eta) * std::tan(eta)))); + for(double chi = 0.01; chi < chiMax - 0.01; chi += 0.05) + { + double sinChi = std::sin(chi); + std::array dir = {sinChi * std::cos(eta), sinChi * std::sin(eta), std::cos(chi)}; + auto [r, g, b] = nhKey.direction2Color(dir); + double brightness = (r + g + b) / 3.0; + if(brightness > 0.6) hasBright = true; + if(brightness < 0.4) hasDark = true; + } + } + REQUIRE(hasBright); + REQUIRE(hasDark); + } + + SECTION("Direction in supergroup sector -> bright, direction outside -> dark") + { + // [0,0,1] is in both m-3m and m-3 sectors -> should be bright (white center half) + std::array dir001 = {0.0, 0.0, 1.0}; + if(supergroupSector.isInside(dir001) && sector.isInside(dir001)) + { + auto [r, g, b] = nhKey.direction2Color(dir001); + double brightness = (r + g + b) / 3.0; + REQUIRE(brightness > 0.5); + } + + // A direction in the m-3 sector but NOT in the m-3m sector -> dark (black center half) + // Example: eta ~= 60 deg, which is outside m-3m's [0, 45] but inside m-3's [0, 90] + double sinChi = std::sin(0.3); + std::array dirExtended = {sinChi * std::cos(1.1), sinChi * std::sin(1.1), std::cos(0.3)}; + if(sector.isInside(dirExtended) && !supergroupSector.isInside(dirExtended)) + { + auto [r, g, b] = nhKey.direction2Color(dirExtended); + double brightness = (r + g + b) / 3.0; + REQUIRE(brightness < 0.5); + } + } +} +``` + +- [ ] **Step 2: Implement extended key logic in NolzeHielscherColorKey::direction2Color()** + +For extended mode (Section 2.6 of the paper): +1. The direction vector h is already in the P sector (done by LaueOps before calling us) +2. Construct the supergroup P+ sector using `FundamentalSectorGeometry` factory for the supergroup index +3. Check if h is inside the P+ sector via `supergroupSector.isInside(h)` +4. If yes (h is in both P and P+ sectors): white center half + - Compute polar coords in the P+ sector: `(radius, rho) = supergroupSector.polarCoordinates(h)` + - `radius_mapped = 0.5 + radius / 2` (maps [0,1] -> [0.5, 1.0]) +5. If no (h is in P but not P+): black center half + - Reflect h into the P+ sector (apply the mirror that maps P's extended half into P+) + - Compute polar coords of reflected h in P+: `(radius, rho)` + - `radius_mapped = (1 - radius) / 2` (maps [0,1] -> [0.5, 0.0]) +6. Compute L from radius_mapped, S from L, H from corrected rho +7. Convert (H, S, L) to RGB + +The supergroup sector is constructed once in the NolzeHielscherColorKey constructor (not per-pixel) and stored as a member for thread safety. + +- [ ] **Step 3: Build and run tests** + +Run: `cd /Users/mjackson/Workspace5/DREAM3D-Build/EbsdLib-Release && cmake --build . --target all && ctest -R "NolzeHielscher" --verbose` +Expected: All PASS + +- [ ] **Step 4: Commit** + +```bash +git add Source/EbsdLib/Utilities/NolzeHielscherColorKey.cpp Source/EbsdLib/Utilities/FundamentalSectorGeometry.cpp Source/Test/NolzeHielscherColorKeyTest.cpp +git commit -m "feat: implement extended color key for non-mirror Laue groups (m-3, 6/m, 4/m, 2/m)" +``` + +--- + +### Task 9: Generate Comparison Legends Application + +**Files:** +- Modify: `Source/Apps/generate_ipf_legends.cpp` + +- [ ] **Step 1: Add NH legend generation to the existing app** + +Modify the `generate_ipf_legends` application to generate both TSL and Nolze-Hielscher legends side-by-side for all 11 Laue groups. Output as TIFF files. + +- [ ] **Step 2: Build and run the application manually** + +Run: `cd /Users/mjackson/Workspace5/DREAM3D-Build/EbsdLib-Release && cmake --build . --target generate_ipf_legends && ./bin/generate_ipf_legends` + +Visually inspect the output TIFF files to verify the N-H legends look correct (enlarged gray center, smooth color gradients, no discontinuities for standard-key groups). + +- [ ] **Step 3: Commit** + +```bash +git add Source/Apps/generate_ipf_legends.cpp +git commit -m "feat: generate_ipf_legends app produces both TSL and Nolze-Hielscher legends" +``` + +--- + +### Task 10: Handle "Impossible" Coloring Mode (-1, -3) + +**Files:** +- Modify: `Source/EbsdLib/Utilities/NolzeHielscherColorKey.cpp` +- Modify: `Source/Test/NolzeHielscherColorKeyTest.cpp` + +The Laue groups -1 (triclinic) and -3 (trigonal low) have fundamental sectors that are topologically equivalent to the real projective plane (RP2). No continuous injective coloring exists (Massey, 1959). We implement the "unique but discontinuous" compromise: each direction gets a unique color, but color jumps exist at the boundary where identified points meet. + +- [ ] **Step 1: Add tests** + +```cpp +TEST_CASE("ebsdlib::NolzeHielscherColorKey::ImpossibleMode_Triclinic", "[EbsdLib][NolzeHielscher]") +{ + auto sector = ebsdlib::FundamentalSectorGeometry::triclinic(); + REQUIRE(sector.colorKeyMode() == "impossible"); + + ebsdlib::NolzeHielscherColorKey nhKey(sector); + + SECTION("Produces valid colors for all directions in upper hemisphere") + { + for(double eta = 0.0; eta < 2.0 * M_PI; eta += 0.2) + { + for(double chi = 0.01; chi < M_PI / 2.0 - 0.01; chi += 0.2) + { + double sinChi = std::sin(chi); + std::array dir = {sinChi * std::cos(eta), sinChi * std::sin(eta), std::cos(chi)}; + auto [r, g, b] = nhKey.direction2Color(dir); + REQUIRE(r >= 0.0); + REQUIRE(r <= 1.0); + REQUIRE(g >= 0.0); + REQUIRE(g <= 1.0); + REQUIRE(b >= 0.0); + REQUIRE(b <= 1.0); + } + } + } + + SECTION("Distinct directions produce distinct colors") + { + std::array dir1 = {0.0, 0.0, 1.0}; + std::array dir2 = {1.0, 0.0, 0.0}; + auto [r1, g1, b1] = nhKey.direction2Color(dir1); + auto [r2, g2, b2] = nhKey.direction2Color(dir2); + double diff = std::abs(r1 - r2) + std::abs(g1 - g2) + std::abs(b1 - b2); + REQUIRE(diff > 0.1); + } +} +``` + +- [ ] **Step 2: Implement impossible mode in direction2Color()** + +For impossible mode, use the standard color key (single white center) applied to the full sector. This produces unique colors with a documented discontinuity at the boundary where opposite points are identified. The paper recommends this as compromise (a) from Section 2.7. + +- [ ] **Step 3: Build and run tests** + +Run: `cd /Users/mjackson/Workspace5/DREAM3D-Build/EbsdLib-Release && cmake --build . --target all && ctest -R "NolzeHielscher" --verbose` +Expected: All PASS + +- [ ] **Step 4: Commit** + +```bash +git add Source/EbsdLib/Utilities/NolzeHielscherColorKey.cpp Source/Test/NolzeHielscherColorKeyTest.cpp +git commit -m "feat: handle 'impossible' coloring mode for triclinic and trigonal-low groups" +``` + +--- + +## Notes for Session Transfer + +When switching project folders, the implementer needs: +1. This plan document (self-contained with all formulas, constants, file paths, and test code) +2. The feasibility study at `.claude/reports/ebsd_color_palettes.md` (background context) +3. Access to the paper preprint at https://www.tu-chemnitz.de/mathematik/preprint/2016/PREPRINT_01.pdf + +**Key implementation reminders:** +- All formulas come from the paper (Sections 2.2-2.6, Appendix A) or textbook spherical geometry +- Do NOT consult MTEX, orix, or any other GPL-licensed implementation +- The hue speed function uses `exp(-|wrap(rho)|/4)` (paper Eq. 5), NOT `exp(-200*x^2)` (MTEX-specific) +- Precompute azimuthal correction tables and hue speed CDF in constructors for thread safety +- Guard against singularity when direction == barycenter in polar coordinate computation +- Handle non-triangular sectors (4 vertices for m-3, 2 for monoclinic, 0 for triclinic) in azimuthal correction +- The supergroup sector for extended keys should be constructed once and stored as a member + +**Deferred for future work (not in this plan):** +- CVD-friendly color palette (red-yellow-cyan-blue variant, per EDAX OIM v9) +- Configurable Gaussian width and baseline in hue speed function +- CIELAB perceptual uniformity optimization + +--- + +## Dependency Graph + +``` +Task 1 (ColorSpaceUtils) ──┐ + ├──> Task 3 (TSLColorKey) ──┐ +Task 2 (IColorKey) ─────────┤ ├──> Task 6 (LaueOps Integration) ──> Task 7 (Legends) + │ │ + └──> Task 5 (NH ColorKey) ───┤ + │ │ +Task 4 (SectorGeometry) ───────────┘ └──> Task 8 (Extended Key) ──> Task 10 (Impossible Mode) + │ + └──> Task 9 (Comparison App) +``` + +- Tasks 1, 2, and 4 can be done in parallel (no inter-dependencies). +- Task 3 depends on Tasks 1 and 2. +- Task 5 depends on Tasks 1, 2, and 4. +- Task 6 depends on Tasks 3 and 5. +- Task 7 depends on Task 6. +- Task 8 depends on Tasks 4 and 6 (needs FundamentalSectorGeometry for supergroup sector construction). +- Task 9 depends on Task 8. +- Task 10 depends on Task 8. diff --git a/Docs/superpowers/plans/2026-03-24-sst-zoomed-density.md b/Docs/superpowers/plans/2026-03-24-sst-zoomed-density.md new file mode 100644 index 00000000..d790bb58 --- /dev/null +++ b/Docs/superpowers/plans/2026-03-24-sst-zoomed-density.md @@ -0,0 +1,316 @@ +# SST-Zoomed IPF Density Implementation Plan + +> **For agentic workers:** REQUIRED SUB-SKILL: Use superpowers:subagent-driven-development (recommended) or superpowers:executing-plans to implement this plan task-by-task. Steps use checkbox (`- [ ]`) syntax for tracking. + +**Goal:** Make IPF density images fill the frame by mapping pixels to only the SST bounding box (eta/chi range) instead of the full Lambert hemisphere disk. + +**Architecture:** Add an optional `sstBoundingBox` parameter to `computeIPFIntensity()`. When provided, pixels map to the SST region in (eta, chi) spherical coordinates. The bounding box values come from the existing `getIpfColorAngleLimits()` virtual method already on all 11 LaueOps subclasses. `generateAnnotatedIPFDensity()` passes the bounding box automatically. + +**Tech Stack:** C++20, EbsdLib LaueOps, InversePoleFigureUtilities, Lambert projection + +--- + +## File Map + +| File | Change | +|------|--------| +| `Source/EbsdLib/Utilities/InversePoleFigureUtilities.h` | Add optional `sstBoundingBox` parameter to `computeIPFIntensity()` | +| `Source/EbsdLib/Utilities/InversePoleFigureUtilities.cpp` | Implement SST-zoomed pixel mapping when bounding box provided | +| `Source/EbsdLib/LaueOps/LaueOps.cpp` | Update `generateAnnotatedIPFDensity()` to compute bounding box from `getIpfColorAngleLimits()` and pass it | + +No new files. No changes to any of the 11 subclass files (the existing `getIpfColorAngleLimits()` already provides what we need). + +## Key Reference + +**Existing `getIpfColorAngleLimits(double eta)`** — virtual method on all 11 LaueOps subclasses. Returns `std::array` = `{etaMin, etaMax, chiMax}` in radians. For cubic classes, `chiMax` varies with `eta`; for all others it's constant (90° = π/2). + +**Existing constants per subclass** (all in degrees, in each .cpp file): + +| Subclass | etaMin | etaMax | chiMax | +|----------|--------|--------|--------| +| CubicOps | 0 | 45 | dynamic: arccos(1/sqrt(3)) ≈ 54.74° at eta=45° | +| CubicLowOps | 0 | 90 | dynamic: arccos(1/sqrt(3)) ≈ 54.74° at eta=45° | +| HexagonalOps | 0 | 30 | 90 | +| HexagonalLowOps | 0 | 60 | 90 | +| TrigonalOps | -90 | -30 | 90 | +| TrigonalLowOps | -120 | 0 | 90 | +| TetragonalOps | 0 | 45 | 90 | +| TetragonalLowOps | 0 | 90 | 90 | +| OrthoRhombicOps | 0 | 90 | 90 | +| MonoclinicOps | 0 | 180 | 90 | +| TriclinicOps | 0 | 180 | 90 | + +Note: TrigonalOps and TrigonalLowOps have **negative** eta ranges. The SST mapping must handle negative eta values correctly. + +--- + +## Tasks + +### Task 1: Modify `computeIPFIntensity()` to accept SST bounding box + +**Files:** +- Modify: `Source/EbsdLib/Utilities/InversePoleFigureUtilities.h` +- Modify: `Source/EbsdLib/Utilities/InversePoleFigureUtilities.cpp` + +- [ ] **Step 1: Update the function signature in the header** + +In `InversePoleFigureUtilities.h`, change the declaration from: + +```cpp + static ebsdlib::DoubleArrayType::Pointer computeIPFIntensity(const LaueOps& ops, ebsdlib::FloatArrayType* ipfDirections, int imageWidth, int imageHeight, int lambertDim, bool normalizeMRD); +``` + +To: + +```cpp + static ebsdlib::DoubleArrayType::Pointer computeIPFIntensity(const LaueOps& ops, ebsdlib::FloatArrayType* ipfDirections, int imageWidth, int imageHeight, int lambertDim, bool normalizeMRD, + const std::array* sstBoundingBox = nullptr); +``` + +Add `#include ` if not already present. + +Update the doc comment to add: +``` + * @param sstBoundingBox Optional SST bounding box {etaMin, etaMax, chiMin, chiMax} in radians. + * When provided, pixels map to only this region in (eta, chi) space, making the SST fill the image. + * When nullptr, uses the default full Lambert hemisphere disk mapping. +``` + +- [ ] **Step 2: Update the function signature in the .cpp file** + +In `InversePoleFigureUtilities.cpp`, update the function definition to match the new signature: + +```cpp +ebsdlib::DoubleArrayType::Pointer InversePoleFigureUtilities::computeIPFIntensity(const LaueOps& ops, ebsdlib::FloatArrayType* ipfDirections, int imageWidth, int imageHeight, int lambertDim, + bool normalizeMRD, const std::array* sstBoundingBox) +``` + +- [ ] **Step 3: Add the SST-zoomed pixel mapping code path** + +In `InversePoleFigureUtilities.cpp`, replace the pixel iteration loop (the "Step 3" section, lines ~172-234) with code that handles both modes. The Lambert binning (Steps 1-2) stays unchanged. Replace from the `// Step 3:` comment through the end of the function: + +```cpp + // Step 3: Create the output intensity image + std::vector tDims = {static_cast(imageWidth * imageHeight)}; + std::vector cDims = {1}; + ebsdlib::DoubleArrayType::Pointer intensity = ebsdlib::DoubleArrayType::CreateArray(tDims, cDims, "IPF_Intensity", true); + double* intensityPtr = intensity->getPointer(0); + + if(sstBoundingBox != nullptr) + { + // SST-zoomed mode: map pixels to the SST bounding box in (eta, chi) space + double etaMin = (*sstBoundingBox)[0]; + double etaMax = (*sstBoundingBox)[1]; + double chiMin = (*sstBoundingBox)[2]; + double chiMax = (*sstBoundingBox)[3]; + + for(int y = 0; y < imageHeight; y++) + { + for(int x = 0; x < imageWidth; x++) + { + int index = y * imageWidth + x; + + // Map pixel to (eta, chi) within the bounding box + // x maps to eta (left=etaMin, right=etaMax) + // y maps to chi (top=chiMin, bottom=chiMax) + double eta = etaMin + (static_cast(x) + 0.5) / static_cast(imageWidth) * (etaMax - etaMin); + double chi = chiMin + (static_cast(y) + 0.5) / static_cast(imageHeight) * (chiMax - chiMin); + + // Check if direction is inside the SST + if(!ops.inUnitTriangle(eta, chi)) + { + intensityPtr[index] = -1.0; + continue; + } + + // Convert (eta, chi) to unit sphere xyz + double sinChi = std::sin(chi); + std::array xyz = { + static_cast(sinChi * std::cos(eta)), + static_cast(sinChi * std::sin(eta)), + static_cast(std::cos(chi))}; + + // Look up the interpolated intensity from the Lambert projection + std::array sqCoord = {0.0f, 0.0f}; + bool isNorth = lambert->getSquareCoord(xyz.data(), sqCoord.data()); + if(isNorth) + { + intensityPtr[index] = lambert->getInterpolatedValue(ModifiedLambertProjection::NorthSquare, sqCoord.data()); + } + else + { + intensityPtr[index] = lambert->getInterpolatedValue(ModifiedLambertProjection::SouthSquare, sqCoord.data()); + } + } + } + } + else + { + // Original full-disk mode: Lambert azimuthal equal-area projection + float unitRadius = std::sqrt(2.0f); + float span = 2.0f * unitRadius; + float xres = span / static_cast(imageWidth); + float yres = span / static_cast(imageHeight); + + int halfWidth = imageWidth / 2; + int halfHeight = imageHeight / 2; + + for(int y = 0; y < imageHeight; y++) + { + for(int x = 0; x < imageWidth; x++) + { + int index = y * imageWidth + x; + + float xtmp = static_cast(x - halfWidth) * xres + (xres * 0.5f); + float ytmp = static_cast(y - halfHeight) * yres + (yres * 0.5f); + + float rhoSq = xtmp * xtmp + ytmp * ytmp; + + if(rhoSq > 2.0f) + { + intensityPtr[index] = -1.0; + continue; + } + + float t = std::sqrt(1.0f - rhoSq / 4.0f); + std::array xyz = {xtmp * t, ytmp * t, 1.0f - rhoSq / 2.0f}; + + double chi = std::acos(static_cast(xyz[2])); + double eta = std::atan2(static_cast(xyz[1]), static_cast(xyz[0])); + + if(!ops.inUnitTriangle(eta, chi)) + { + intensityPtr[index] = -1.0; + continue; + } + + std::array sqCoord = {0.0f, 0.0f}; + bool isNorth = lambert->getSquareCoord(xyz.data(), sqCoord.data()); + if(isNorth) + { + intensityPtr[index] = lambert->getInterpolatedValue(ModifiedLambertProjection::NorthSquare, sqCoord.data()); + } + else + { + intensityPtr[index] = lambert->getInterpolatedValue(ModifiedLambertProjection::SouthSquare, sqCoord.data()); + } + } + } + } + + return intensity; +``` + +- [ ] **Step 4: Build the library** + +```bash +cd /Users/mjackson/Workspace1/DREAM3D-Build/EbsdLib-Release && cmake --build . --target EbsdLib 2>&1 | tail -10 +``` +Expected: Clean build. The default parameter means all existing callers still work unchanged. + +- [ ] **Step 5: Commit** + +```bash +cd /Users/mjackson/Workspace1/EbsdLib +git add Source/EbsdLib/Utilities/InversePoleFigureUtilities.h Source/EbsdLib/Utilities/InversePoleFigureUtilities.cpp +git commit -m "ENH: Add SST bounding box parameter to computeIPFIntensity for zoomed density" +``` + +--- + +### Task 2: Update `generateAnnotatedIPFDensity()` to pass the bounding box + +**Files:** +- Modify: `Source/EbsdLib/LaueOps/LaueOps.cpp` + +- [ ] **Step 1: Compute the SST bounding box and pass it to `computeIPFIntensity()`** + +In `LaueOps.cpp`, in the `generateAnnotatedIPFDensity()` method, find the three calls to `computeIPFIntensity()` (around line 1154-1156). Before those calls, add code to compute the bounding box from the existing `getIpfColorAngleLimits()` method: + +```cpp + // Compute SST bounding box for zoomed density images + // getIpfColorAngleLimits returns {etaMin, etaMax, chiMax(eta)} in radians. + // For cubic classes, chiMax varies with eta; use max value at etaMax. + auto angleLimits = getIpfColorAngleLimits(0.0); // Get etaMin, etaMax + double etaMin = angleLimits[0]; + double etaMax = angleLimits[1]; + + // Get chiMax at etaMax (gives the largest chiMax for cubic; same for others) + auto angleLimitsAtMax = getIpfColorAngleLimits(etaMax); + double chiMax = angleLimitsAtMax[2]; + + // Also check chiMax at etaMin in case it's larger (shouldn't be, but safe) + auto angleLimitsAtMin = getIpfColorAngleLimits(etaMin); + if(angleLimitsAtMin[2] > chiMax) + { + chiMax = angleLimitsAtMin[2]; + } + + std::array sstBBox = {etaMin, etaMax, 0.0, chiMax}; +``` + +Then update the three `computeIPFIntensity` calls to pass `&sstBBox`: + +```cpp + ebsdlib::DoubleArrayType::Pointer intensity0 = InversePoleFigureUtilities::computeIPFIntensity(*this, dirs0.get(), imageDim, imageDim, config.lambertDim, config.normalizeMRD, &sstBBox); + ebsdlib::DoubleArrayType::Pointer intensity1 = InversePoleFigureUtilities::computeIPFIntensity(*this, dirs1.get(), imageDim, imageDim, config.lambertDim, config.normalizeMRD, &sstBBox); + ebsdlib::DoubleArrayType::Pointer intensity2 = InversePoleFigureUtilities::computeIPFIntensity(*this, dirs2.get(), imageDim, imageDim, config.lambertDim, config.normalizeMRD, &sstBBox); +``` + +- [ ] **Step 2: Build everything** + +```bash +cd /Users/mjackson/Workspace1/DREAM3D-Build/EbsdLib-Release && cmake --build . --target all 2>&1 | tail -10 +``` +Expected: Clean build. + +- [ ] **Step 3: Test with the Iron BCC CTF file** + +```bash +cd /Users/mjackson/Workspace1/DREAM3D-Build/EbsdLib-Release && ./Bin/generate_ipf_from_file "/Users/mjackson/Applications/NXData/Data/T12-MAI-2010/fw-ar-IF1-aptr12-corr.ctf" /tmp/ipf_sst_zoomed 2>&1 +``` + +Convert the output to PNG and visually inspect. The SST triangle should now fill the frame, with labels aligned to the corners. + +- [ ] **Step 4: Test with generate_ipf_density (random orientations)** + +```bash +cd /Users/mjackson/Workspace1/DREAM3D-Build/EbsdLib-Release && ./Bin/generate_ipf_density /tmp/ipf_density_zoomed 500 2>&1 +``` + +Check output for all 11 Laue classes — each should have a well-filled triangle. + +- [ ] **Step 5: Run all unit tests** + +```bash +cd /Users/mjackson/Workspace1/DREAM3D-Build/EbsdLib-Release && ctest -R "EbsdLib::" 2>&1 | tail -5 +``` +Expected: All 296 tests pass. + +- [ ] **Step 6: Commit** + +```bash +cd /Users/mjackson/Workspace1/EbsdLib +git add Source/EbsdLib/LaueOps/LaueOps.cpp +git commit -m "ENH: Pass SST bounding box to computeIPFIntensity for zoomed density images" +``` + +--- + +## Important Notes + +### Negative eta ranges (TrigonalOps, TrigonalLowOps) + +TrigonalOps has etaMin=-90°, etaMax=-30°. TrigonalLowOps has etaMin=-120°, etaMax=0°. The pixel mapping formula `eta = etaMin + fraction * (etaMax - etaMin)` handles negative ranges correctly since it's a simple linear interpolation. The `inUnitTriangle` check will correctly identify which pixels are inside the SST. + +### Cubic dynamic chiMax + +For CubicOps and CubicLowOps, the SST has a curved upper boundary where chiMax varies with eta. The bounding box uses the maximum chiMax (at eta=45° for CubicHigh). Pixels inside the bounding box but outside the curved boundary will have `inUnitTriangle` return false and render as white — identical to how the legend handles it. + +### Backward compatibility + +The `computeIPFIntensity()` change uses a default parameter (`nullptr`). All existing callers (including the non-annotated `generateInversePoleFigure()`) continue to work unchanged with the full-disk mapping. + +### No changes to annotation positioning + +The `annotateIPFImage()` method and `drawIPFAnnotations()` overrides already place Miller index labels at positions relative to the canvas. Since the density image now fills the same region as the legend, the labels should align correctly with the triangle corners. diff --git a/Docs/superpowers/specs/2026-03-24-sst-zoomed-density-design.md b/Docs/superpowers/specs/2026-03-24-sst-zoomed-density-design.md new file mode 100644 index 00000000..b7c4950c --- /dev/null +++ b/Docs/superpowers/specs/2026-03-24-sst-zoomed-density-design.md @@ -0,0 +1,79 @@ +# SST-Zoomed Inverse Pole Figure Density — Design Spec + +## Problem + +The IPF density images map pixels to the full Lambert equal-area hemisphere disk, but the Standard Stereographic Triangle (SST) occupies only a small fraction of the full disk. For cubic symmetry, the SST is roughly 1/48th of the hemisphere. This produces a tiny triangle in a large white image. The IPF legend, by contrast, zooms to fill the frame with just the SST region. + +## Solution + +Add a virtual method `getSSTBoundingBox()` to LaueOps that returns the spherical coordinate bounds (etaMin, etaMax, chiMin, chiMax) of each symmetry class's SST. Modify `computeIPFIntensity()` to accept an optional bounding box parameter. When provided, pixels map to only the SST bounding box region in (eta, chi) space instead of the full Lambert disk. + +The Lambert binning of crystal directions (accumulation step) is unchanged. Only the output pixel-to-sphere mapping changes. + +## New Virtual Method + +```cpp +virtual std::array getSSTBoundingBox() const; +// Returns {etaMin, etaMax, chiMin, chiMax} in radians +``` + +### Per-Subclass Values + +| Subclass | etaMax (deg) | chiMax (deg) | +|----------|-------------|-------------| +| Cubic High (m-3m) | 45 | 54.7356 (arccos(1/sqrt(3))) | +| Cubic Low (m-3) | 45 | 54.7356 | +| Hexagonal High (6/mmm) | 30 | 90 | +| Hexagonal Low (6/m) | 30 | 90 | +| Trigonal High (-3m) | 30 | 90 | +| Trigonal Low (-3) | 60 | 90 | +| Tetragonal High (4/mmm) | 45 | 90 | +| Tetragonal Low (4/m) | 45 | 90 | +| Orthorhombic (mmm) | 90 | 90 | +| Monoclinic (2/m) | 90 | 90 | +| Triclinic (-1) | 180 | 90 | + +All subclasses have etaMin = 0, chiMin = 0. For cubic classes, the SST has a curved upper chi boundary that varies with eta; the bounding box uses the maximum chiMax. The existing `inUnitTriangle()` check marks pixels outside the curved boundary as white. + +## Modified computeIPFIntensity Signature + +```cpp +static DoubleArrayType::Pointer computeIPFIntensity( + const LaueOps& ops, + FloatArrayType* ipfDirections, + int imageWidth, int imageHeight, + int lambertDim, bool normalizeMRD, + const std::array* sstBoundingBox = nullptr); +``` + +When `sstBoundingBox` is nullptr: existing full-disk behavior (backward compatible). +When provided: zoomed SST behavior. + +## Pixel-to-Sphere Mapping (Zoomed SST Mode) + +``` +For each pixel (px, py) in [0, imageWidth) x [0, imageHeight): + eta = etaMin + ((px + 0.5) / imageWidth) * (etaMax - etaMin) + chi = chiMin + ((py + 0.5) / imageHeight) * (chiMax - chiMin) + + xyz = (sin(chi)*cos(eta), sin(chi)*sin(eta), cos(chi)) + + if !inUnitTriangle(eta, chi): + intensity = -1.0 (white) + else: + intensity = lambert.getInterpolatedValue(xyz) +``` + +The +0.5 offset centers the sample at each pixel center. + +## Changes to generateAnnotatedIPFDensity + +Call `getSSTBoundingBox()` and pass it to `computeIPFIntensity()`. No other changes needed — the output image fills the frame with the SST, and the annotation labels from `drawIPFAnnotations()` align correctly. + +## Files to Modify + +- `Source/EbsdLib/LaueOps/LaueOps.h` — add `getSSTBoundingBox()` virtual declaration +- `Source/EbsdLib/LaueOps/LaueOps.cpp` — update `generateAnnotatedIPFDensity()` to pass bounding box; add default `getSSTBoundingBox()` implementation +- `Source/EbsdLib/Utilities/InversePoleFigureUtilities.h` — update `computeIPFIntensity()` signature +- `Source/EbsdLib/Utilities/InversePoleFigureUtilities.cpp` — implement zoomed SST mapping +- 11 LaueOps subclass `.h` and `.cpp` files — add `getSSTBoundingBox()` override diff --git a/Docs/x_parallel_a_star_convention.svg b/Docs/x_parallel_a_star_convention.svg new file mode 100644 index 00000000..e924b67a --- /dev/null +++ b/Docs/x_parallel_a_star_convention.svg @@ -0,0 +1,142 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + X‖a vs X‖a* — Hexagonal Cartesian-frame conventions + + + Same crystal, same physics. Only the choice of where Cartesian X points within the basal plane changes. + + + + + + + + + + Basal plane (looking down c-axis) + + + + + + + + + + + + + a1 + a2 + a3 + + + + + + a*1 + + + + + X + (X‖a) + + + + X + (X‖a*) + + + + 30° + + + + + + + a*1 is perpendicular to (a2, c) — at 30° CCW from a1 in the basal plane. + Picking the Cartesian X-axis along a1 (red) or a*1 (blue) is a 30° choice. + + + + + + + Same (10-10) plane normal — two pole-figure positions + + + + + + + + + + + + +x + +y + + + + + + X‖a + (0.866, 0.5) + + + + + X‖a* + (1, 0) + + + + 30° + + + + + + + The plane normal of (10-10) is a*1 — same physical direction in both frames. + Its Cartesian (x, y) — and so its pole-figure position — rotates by 30°. + + + + + + + + EbsdLib v3 uses X‖a* for hexagonal/trigonal Laue classes — matching MTEX and Oxford / HKL acquisition systems. + + + See Data/Pole_Figure_Validation/ReadMe.md for the full per-Laue-class convention table and validation methodology. + + diff --git a/Source/Apps/SourceList.cmake b/Source/Apps/SourceList.cmake index 2020627b..292c298d 100644 --- a/Source/Apps/SourceList.cmake +++ b/Source/Apps/SourceList.cmake @@ -25,12 +25,36 @@ target_include_directories(eq_orientations PUBLIC ${EbsdLibProj_SOURCE_DIR}/Sour add_executable(generate_ipf_legends ${EbsdLibProj_SOURCE_DIR}/Source/Apps/generate_ipf_legends.cpp) target_link_libraries(generate_ipf_legends PUBLIC EbsdLib) -target_include_directories(generate_ipf_legends - PUBLIC - ${EbsdLibProj_SOURCE_DIR}/Source - ${EbsdLibProj_BINARY_DIR} - PRIVATE - "${EbsdLibProj_SOURCE_DIR}/3rdParty/canvas_ity/src") +target_include_directories(generate_ipf_legends + PUBLIC + ${EbsdLibProj_SOURCE_DIR}/Source + ${EbsdLibProj_BINARY_DIR}) + +add_executable(generate_ipf_density ${EbsdLibProj_SOURCE_DIR}/Source/Apps/generate_ipf_density.cpp) +target_link_libraries(generate_ipf_density PUBLIC EbsdLib) +target_include_directories(generate_ipf_density + PUBLIC + ${EbsdLibProj_SOURCE_DIR}/Source + ${EbsdLibProj_BINARY_DIR}) + +add_executable(generate_ipf_from_file ${EbsdLibProj_SOURCE_DIR}/Source/Apps/generate_ipf_from_file.cpp) +target_link_libraries(generate_ipf_from_file PUBLIC EbsdLib) +target_include_directories(generate_ipf_from_file PUBLIC ${EbsdLibProj_SOURCE_DIR}/Source) + +add_executable(generate_pole_figure ${EbsdLibProj_SOURCE_DIR}/Source/Apps/generate_pole_figure.cpp) +target_link_libraries(generate_pole_figure PUBLIC EbsdLib) +target_include_directories(generate_pole_figure PUBLIC ${EbsdLibProj_SOURCE_DIR}/Source) + +add_executable(make_pole_figure ${EbsdLibProj_SOURCE_DIR}/Source/Apps/make_pole_figure.cpp) +target_link_libraries(make_pole_figure PUBLIC EbsdLib) +target_include_directories(make_pole_figure PUBLIC ${EbsdLibProj_SOURCE_DIR}/Source) + +add_executable(render_ebsd + ${EbsdLibProj_SOURCE_DIR}/Source/Apps/render_ebsd.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/Apps/render_ebsd.h + ${EbsdLibProj_SOURCE_DIR}/Source/Apps/render_ebsd_main.cpp) +target_link_libraries(render_ebsd PUBLIC EbsdLib) +target_include_directories(render_ebsd PUBLIC ${EbsdLibProj_SOURCE_DIR}/Source) add_executable(ParseAztecProject ${EbsdLibProj_SOURCE_DIR}/Source/Apps/ParseAztecProject.cpp) target_link_libraries(ParseAztecProject PUBLIC EbsdLib) diff --git a/Source/Apps/generate_ipf_density.cpp b/Source/Apps/generate_ipf_density.cpp new file mode 100644 index 00000000..61f48e9f --- /dev/null +++ b/Source/Apps/generate_ipf_density.cpp @@ -0,0 +1,456 @@ +/* ============================================================================ + * Copyright (c) 2025-2026 BlueQuartz Software, LLC + * + * Redistribution and use in source and binary forms, with or without modification, + * are permitted provided that the following conditions are met: + * + * Redistributions of source code must retain the above copyright notice, this + * list of conditions and the following disclaimer. + * + * Redistributions in binary form must reproduce the above copyright notice, this + * list of conditions and the following disclaimer in the documentation and/or + * other materials provided with the distribution. + * + * Neither the name of BlueQuartz Software, the US Air Force, nor the names of its + * contributors may be used to endorse or promote products derived from this software + * without specific prior written permission. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE + * DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR + * SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, + * OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE + * USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + * + * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ + +/** + * @file generate_ipf_density.cpp + * @brief Example program that generates Inverse Pole Figure (IPF) density images + * for all 11 Laue classes using random orientations. The IPF density plot shows + * how a sample direction distributes across crystal directions within the + * Standard Stereographic Triangle (SST). + * + * For each Laue class, 3 TIFF images are generated corresponding to 3 orthogonal + * sample directions: RD (Rolling Direction), TD (Transverse Direction), and + * ND (Normal Direction). + * + * Additionally, a quaternion texture file is read and used to generate IPF density + * images (ND direction) for all 11 Laue classes, demonstrating a strong near-cube + * texture. + * + * Usage: + * generate_ipf_density [output_directory] [num_orientations] + * + * If no arguments are provided, output goes to the build's Testing/Temporary directory + * and 5000 random orientations are used. + */ + +#include "EbsdLib/Core/EbsdDataArray.hpp" +#include "EbsdLib/Core/EbsdLibConstants.h" +#include "EbsdLib/LaueOps/LaueOps.h" +#include "EbsdLib/OrientationMath/OrientationConverter.hpp" +#include "EbsdLib/Utilities/EbsdStringUtils.hpp" +#include "EbsdLib/Utilities/InversePoleFigureUtilities.h" +#include "EbsdLib/Utilities/PngWriter.h" + +#include "EbsdLib/Apps/EbsdLibFileLocations.h" + +#include +#include +#include +#include +#include +#include +#include +#include + +using namespace ebsdlib; + +namespace +{ + +// ----------------------------------------------------------------------- +// Generate random Euler angles with proper sampling of the orientation space. +// Uses a cosine distribution for Phi to ensure uniform coverage of SO(3). +// ----------------------------------------------------------------------- +ebsdlib::FloatArrayType::Pointer generateRandomEulers(size_t numOrientations, unsigned int seed) +{ + std::vector cDims = {3}; + auto eulers = ebsdlib::FloatArrayType::CreateArray(numOrientations, cDims, "EulerAngles", true); + + std::mt19937 gen(seed); + std::uniform_real_distribution phi1Dist(0.0f, static_cast(ebsdlib::constants::k_2PiD)); + std::uniform_real_distribution cosDist(-1.0f, 1.0f); + std::uniform_real_distribution phi2Dist(0.0f, static_cast(ebsdlib::constants::k_2PiD)); + + for(size_t i = 0; i < numOrientations; i++) + { + float* ptr = eulers->getTuplePointer(i); + ptr[0] = phi1Dist(gen); // phi1: [0, 2pi) + ptr[1] = std::acos(cosDist(gen)); // Phi: [0, pi] with uniform sphere coverage + ptr[2] = phi2Dist(gen); // phi2: [0, 2pi) + } + return eulers; +} + +// ----------------------------------------------------------------------- +// Generate Euler angles for a single-crystal texture: all orientations identical. +// ----------------------------------------------------------------------- +ebsdlib::FloatArrayType::Pointer generateSingleCrystalEulers(size_t numOrientations, float phi1, float Phi, float phi2) +{ + std::vector cDims = {3}; + auto eulers = ebsdlib::FloatArrayType::CreateArray(numOrientations, cDims, "EulerAngles", true); + + for(size_t i = 0; i < numOrientations; i++) + { + float* ptr = eulers->getTuplePointer(i); + ptr[0] = phi1; + ptr[1] = Phi; + ptr[2] = phi2; + } + return eulers; +} + +// ----------------------------------------------------------------------- +// Convert an ARGB UInt8ArrayType image to RGB by stripping the alpha channel, +// suitable for PngWriter::WriteColorImage with samplesPerPixel=3. +// ----------------------------------------------------------------------- +ebsdlib::UInt8ArrayType::Pointer convertARGBtoRGB(ebsdlib::UInt8ArrayType* argbImage) +{ + size_t numPixels = argbImage->getNumberOfTuples(); + auto rgbImage = ebsdlib::UInt8ArrayType::CreateArray(numPixels, {3ULL}, argbImage->getName(), true); + + for(size_t i = 0; i < numPixels; i++) + { + uint8_t* argb = argbImage->getTuplePointer(i); + uint8_t* rgb = rgbImage->getTuplePointer(i); + + // The ARGB data is stored as a uint32_t: (A << 24) | (R << 16) | (G << 8) | B + // When accessed as bytes on a little-endian system: [B, G, R, A] + uint32_t pixel = *reinterpret_cast(argb); + rgb[0] = static_cast((pixel >> 16) & 0xFF); // R + rgb[1] = static_cast((pixel >> 8) & 0xFF); // G + rgb[2] = static_cast(pixel & 0xFF); // B + } + return rgbImage; +} + +// ----------------------------------------------------------------------- +// Write a single IPF density image to a TIFF file. +// ----------------------------------------------------------------------- +void writeIPFImage(ebsdlib::UInt8ArrayType* image, int width, int height, const std::string& filePath) +{ + auto rgbImage = convertARGBtoRGB(image); + auto result = PngWriter::WriteColorImage(filePath, width, height, 3, rgbImage->data()); + if(result.first < 0) + { + std::cerr << " ERROR writing " << filePath << ": " << result.second << std::endl; + } + else + { + std::cout << " Wrote: " << filePath << std::endl; + } +} + +// ----------------------------------------------------------------------- +// Generate and save annotated IPF density images for a single LaueOps instance. +// ----------------------------------------------------------------------- +void generateIPFForLaueClass(const LaueOps& ops, ebsdlib::FloatArrayType* eulers, const std::string& outputDir, int imageWidth, int imageHeight, int lambertDim, const std::string& textureLabel) +{ + std::string className = ops.getSymmetryName(); + std::cout << "Generating IPF density for: " << className << " (" << textureLabel << ")" << std::endl; + + InversePoleFigureConfiguration_t config; + config.eulers = eulers; + config.sampleDirections = {Matrix3X1D(1.0, 0.0, 0.0), Matrix3X1D(0.0, 1.0, 0.0), Matrix3X1D(0.0, 0.0, 1.0)}; + config.imageWidth = imageWidth; + config.imageHeight = imageHeight; + config.lambertDim = lambertDim; + config.numColors = 64; + config.colorMap = "Default"; + config.normalizeMRD = true; + config.labels = {"RD", "TD", "ND"}; + config.phaseName = className; + config.FlipFinalImage = false; + + auto images = ops.generateAnnotatedIPFDensity(config); + + // Sanitize symmetry name for filename + std::string safeName = className; + for(auto& c : safeName) + { + if(c == '/' || c == '\\' || c == ' ' || c == '(' || c == ')') + { + c = '_'; + } + } + + int canvasDim = static_cast(static_cast(imageWidth) * 1.5f); + std::array dirLabels = {"RD", "TD", "ND"}; + for(size_t i = 0; i < images.size(); i++) + { + std::ostringstream filePath; + filePath << outputDir << "/" << safeName << "_IPF_" << dirLabels[i] << "_" << textureLabel << ".png"; + auto result = PngWriter::WriteColorImage(filePath.str(), canvasDim, canvasDim, 3, images[i]->data()); + if(result.first < 0) + { + std::cerr << " ERROR writing " << filePath.str() << ": " << result.second << std::endl; + } + else + { + std::cout << " Wrote: " << filePath.str() << std::endl; + } + } +} + +// ----------------------------------------------------------------------- +// Read quaternion data from a CSV file and convert to Euler angles using +// the OrientationConverter system. Expected CSV format: X,Y,Z,W,Distance +// (with header line). Quaternions are in vector-scalar order (x, y, z, w). +// Returns FloatArrayType with 3 components (phi1, Phi, phi2) in radians. +// ----------------------------------------------------------------------- +ebsdlib::FloatArrayType::Pointer readQuaternionFileAsEulers(const std::string& filePath) +{ + std::ifstream inFile(filePath); + if(!inFile.is_open()) + { + std::cerr << "ERROR: Could not open quaternion file: " << filePath << std::endl; + return nullptr; + } + + // Skip header line + std::string line; + std::getline(inFile, line); + + // Read all quaternion values (first 4 columns per line) + std::vector quatValues; + while(std::getline(inFile, line)) + { + if(line.empty()) + { + continue; + } + + auto tokens = EbsdStringUtils::split(line, ','); + if(tokens.size() >= 4) + { + quatValues.push_back(std::atof(tokens[0].c_str())); // X + quatValues.push_back(std::atof(tokens[1].c_str())); // Y + quatValues.push_back(std::atof(tokens[2].c_str())); // Z + quatValues.push_back(std::atof(tokens[3].c_str())); // W + } + } + inFile.close(); + + size_t numOrientations = quatValues.size() / 4; + std::cout << " Read " << numOrientations << " quaternions from file" << std::endl; + + // Wrap the quaternion data (4 components per tuple) and convert to Euler angles + using DoubleArrayType = EbsdDataArray; + + std::vector quatDims = {4}; + auto inputQuats = DoubleArrayType::WrapPointer(quatValues.data(), numOrientations, quatDims, "Quaternions", false); + + auto quatConverter = QuaternionConverter::New(); + quatConverter->setInputData(inputQuats); + quatConverter->convertRepresentationTo(ebsdlib::orientations::Type::Euler); + auto eulerData = quatConverter->getOutputData(); + + // Convert double Euler angles to float for the IPF pipeline + std::vector eulerDims = {3}; + auto eulers = ebsdlib::FloatArrayType::CreateArray(numOrientations, eulerDims, "EulerAngles", true); + for(size_t i = 0; i < numOrientations; i++) + { + double* src = eulerData->getTuplePointer(i); + float* dst = eulers->getTuplePointer(i); + dst[0] = static_cast(src[0]); + dst[1] = static_cast(src[1]); + dst[2] = static_cast(src[2]); + } + + return eulers; +} + +// ----------------------------------------------------------------------- +// Generate and save a single IPF density image for one sample direction. +// ----------------------------------------------------------------------- +void generateSingleIPFForLaueClass(const LaueOps& ops, ebsdlib::FloatArrayType* eulers, const Matrix3X1D& sampleDir, const std::string& dirLabel, const std::string& outputDir, int imageWidth, + int imageHeight, int lambertDim, bool normalizeMRD, const std::string& textureLabel) +{ + std::string className = ops.getSymmetryName(); + std::string modeLabel = normalizeMRD ? "MRD" : "Counts"; + std::cout << "Generating IPF " << modeLabel << " for: " << className << " (" << textureLabel << ", " << dirLabel << ")" << std::endl; + + auto directions = InversePoleFigureUtilities::computeIPFDirections(ops, eulers, sampleDir); + auto intensity = InversePoleFigureUtilities::computeIPFIntensity(ops, directions.get(), imageWidth, imageHeight, lambertDim, normalizeMRD); + + // Find min/max for color scaling (only pixels >= 0 are inside SST) + double minVal = std::numeric_limits::max(); + double maxVal = std::numeric_limits::lowest(); + double* dataPtr = intensity->getPointer(0); + for(size_t i = 0; i < intensity->getNumberOfTuples(); i++) + { + if(dataPtr[i] >= 0.0) + { + minVal = std::min(minVal, dataPtr[i]); + maxVal = std::max(maxVal, dataPtr[i]); + } + } + + std::vector cDims = {4}; + auto rgba = ebsdlib::UInt8ArrayType::CreateArray(static_cast(imageWidth * imageHeight), cDims, "RGBA", true); + InversePoleFigureUtilities::createIPFColorImage(intensity.get(), imageWidth, imageHeight, 64, minVal, maxVal, rgba.get()); + + // Sanitize symmetry name for use as a filename + std::string safeName = className; + for(auto& c : safeName) + { + if(c == '/' || c == '\\' || c == ' ' || c == '(' || c == ')') + { + c = '_'; + } + } + + std::ostringstream filePath; + filePath << outputDir << "/" << safeName << "_IPF_" << dirLabel << "_" << textureLabel << "_" << modeLabel << ".png"; + writeIPFImage(rgba.get(), imageWidth, imageHeight, filePath.str()); +} + +} // namespace + +// ============================================================================= +int main(int argc, char* argv[]) +{ + // Parse command-line arguments + std::string outputDir = ebsdlib::unit_test::k_TestTempDir + "/IPF_Density/"; + size_t numOrientations = 5000; + + if(argc >= 2) + { + outputDir = std::string(argv[1]); + if(outputDir.back() != '/') + { + outputDir += '/'; + } + } + if(argc >= 3) + { + numOrientations = static_cast(std::atoi(argv[2])); + if(numOrientations < 100) + { + numOrientations = 100; + } + } + + // Create output directory + std::filesystem::create_directories(outputDir); + + std::cout << "============================================================" << std::endl; + std::cout << " Inverse Pole Figure Density Image Generator" << std::endl; + std::cout << "============================================================" << std::endl; + std::cout << " Output directory: " << outputDir << std::endl; + std::cout << " Num orientations: " << numOrientations << std::endl; + std::cout << " Image size: 256 x 256 pixels" << std::endl; + std::cout << " Lambert dimension: 64" << std::endl; + std::cout << " Normalization: MRD" << std::endl; + std::cout << "============================================================" << std::endl; + std::cout << std::endl; + + int imageWidth = 1024; + int imageHeight = 1024; + int lambertDim = 64; + + // Get all LaueOps + std::vector ops = LaueOps::GetAllOrientationOps(); + + // --------------------------------------------------------------- + // Part 1: Random texture for all 11 Laue classes + // --------------------------------------------------------------- + std::cout << "--- Part 1: Random Texture (" << numOrientations << " random orientations) ---" << std::endl; + std::cout << std::endl; + + auto randomEulers = generateRandomEulers(numOrientations, 12345); + + for(size_t index = 0; index < 11; index++) + { + generateIPFForLaueClass(*ops[index], randomEulers.get(), outputDir, imageWidth, imageHeight, lambertDim, "Random"); + std::cout << std::endl; + } + + // --------------------------------------------------------------- + // Part 2: Single-crystal (Cube) texture for Cubic High symmetry + // This demonstrates a strong texture producing a concentrated spot. + // Euler angles (0, 0, 0) = Cube texture: [001] || ND, [100] || RD + // --------------------------------------------------------------- + std::cout << "--- Part 2: Single Crystal (Cube) Texture - Cubic High ---" << std::endl; + std::cout << std::endl; + + auto cubeEulers = generateSingleCrystalEulers(numOrientations, 0.0f, 0.0f, 0.0f); + generateIPFForLaueClass(*ops[1], cubeEulers.get(), outputDir, imageWidth, imageHeight, lambertDim, "Cube"); + std::cout << std::endl; + + // --------------------------------------------------------------- + // Part 3: Goss texture for Cubic High symmetry + // Euler angles (0, pi/4, 0) = Goss texture: {110}<001> + // --------------------------------------------------------------- + std::cout << "--- Part 3: Goss Texture - Cubic High ---" << std::endl; + std::cout << std::endl; + + auto gossEulers = generateSingleCrystalEulers(numOrientations, 0.0f, static_cast(ebsdlib::constants::k_PiOver4D), 0.0f); + generateIPFForLaueClass(*ops[1], gossEulers.get(), outputDir, imageWidth, imageHeight, lambertDim, "Goss"); + std::cout << std::endl; + + // --------------------------------------------------------------- + // Part 4: Brass texture for Cubic High symmetry + // Euler angles (35*pi/180, 45*pi/180, 0) = Brass-like texture: {110}<112> + // --------------------------------------------------------------- + std::cout << "--- Part 4: Brass Texture - Cubic High ---" << std::endl; + std::cout << std::endl; + + float brassE0 = 35.0f * static_cast(ebsdlib::constants::k_DegToRadD); + float brassE1 = 45.0f * static_cast(ebsdlib::constants::k_DegToRadD); + float brassE2 = 0.0f; + auto brassEulers = generateSingleCrystalEulers(numOrientations, brassE0, brassE1, brassE2); + generateIPFForLaueClass(*ops[1], brassEulers.get(), outputDir, imageWidth, imageHeight, lambertDim, "Brass"); + std::cout << std::endl; + + // --------------------------------------------------------------- + // Part 5: Texture from quaternion file for all 11 Laue classes + // Reads quaternion orientations near (0,0,0,1) representing a strong + // near-cube texture, converts to Euler angles via OrientationConverter, + // and generates IPF density images (ND direction) for all Laue classes. + // --------------------------------------------------------------- + std::cout << "--- Part 5: Quaternion Texture File - All Laue Classes (ND) ---" << std::endl; + std::cout << std::endl; + + std::string quatFilePath = ebsdlib::unit_test::DataDir + "IPF_Legend/quats_000_1_deg.txt"; + auto textureEulers = readQuaternionFileAsEulers(quatFilePath); + if(textureEulers != nullptr) + { + std::cout << std::endl; + + Matrix3X1D nd(0.0, 0.0, 1.0); + for(size_t index = 0; index < 11; index++) + { + generateSingleIPFForLaueClass(*ops[index], textureEulers.get(), nd, "ND", outputDir, imageWidth, imageHeight, lambertDim, true, "QuatTexture"); + std::cout << std::endl; + } + } + else + { + std::cerr << " Skipping Part 5: Could not load quaternion file." << std::endl; + std::cout << std::endl; + } + + std::cout << "============================================================" << std::endl; + std::cout << " Done! All IPF density images written to:" << std::endl; + std::cout << " " << outputDir << std::endl; + std::cout << "============================================================" << std::endl; + + return 0; +} diff --git a/Source/Apps/generate_ipf_from_file.cpp b/Source/Apps/generate_ipf_from_file.cpp new file mode 100644 index 00000000..ce836b1b --- /dev/null +++ b/Source/Apps/generate_ipf_from_file.cpp @@ -0,0 +1,425 @@ +/* ============================================================================ + * Copyright (c) 2025-2026 BlueQuartz Software, LLC + * + * Redistribution and use in source and binary forms, with or without modification, + * are permitted provided that the following conditions are met: + * + * Redistributions of source code must retain the above copyright notice, this + * list of conditions and the following disclaimer. + * + * Redistributions in binary form must reproduce the above copyright notice, this + * list of conditions and the following disclaimer in the documentation and/or + * other materials provided with the distribution. + * + * Neither the name of BlueQuartz Software, the US Air Force, nor the names of its + * contributors may be used to endorse or promote products derived from this software + * without specific prior written permission. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE + * DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR + * SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, + * OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE + * USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + * + * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ + +/** + * @file generate_ipf_from_file.cpp + * @brief Example program that reads a .ctf or .ang EBSD data file and generates + * Inverse Pole Figure (IPF) density images for each phase found in the data. + * + * For each phase, 3 TIFF images are generated corresponding to 3 orthogonal + * sample directions: RD (Rolling Direction), TD (Transverse Direction), and + * ND (Normal Direction). + * + * Usage: + * generate_ipf_from_file [output_directory] + * + * If no output directory is specified, images are written next to the input file. + */ + +#include "EbsdLib/Core/EbsdDataArray.hpp" +#include "EbsdLib/Core/EbsdLibConstants.h" +#include "EbsdLib/IO/HKL/CtfPhase.h" +#include "EbsdLib/IO/HKL/CtfReader.h" +#include "EbsdLib/IO/TSL/AngPhase.h" +#include "EbsdLib/IO/TSL/AngReader.h" +#include "EbsdLib/LaueOps/LaueOps.h" +#include "EbsdLib/Utilities/InversePoleFigureUtilities.h" +#include "EbsdLib/Utilities/PngWriter.h" + +#include +#include +#include +#include +#include +#include +#include + +using namespace ebsdlib; + +namespace +{ + +// ----------------------------------------------------------------------- +// Generate and save annotated IPF density images for a given set of Euler +// angles using a specific LaueOps instance. +// ----------------------------------------------------------------------- +void generateIPFForPhase(const LaueOps& ops, ebsdlib::FloatArrayType* eulers, const std::string& outputDir, int imageWidth, int imageHeight, int lambertDim, const std::string& phaseLabel) +{ + std::string className = ops.getSymmetryName(); + std::cout << "Generating annotated IPF density for phase: " << phaseLabel << " (" << className << ", " << eulers->getNumberOfTuples() << " orientations)" << std::endl; + + InversePoleFigureConfiguration_t config; + config.eulers = eulers; + config.sampleDirections = {Matrix3X1D(1.0, 0.0, 0.0), Matrix3X1D(0.0, 1.0, 0.0), Matrix3X1D(0.0, 0.0, 1.0)}; + config.imageWidth = imageWidth; + config.imageHeight = imageHeight; + config.lambertDim = lambertDim; + config.numColors = 64; + config.colorMap = "Default"; + config.normalizeMRD = true; + config.labels = {"RD", "TD", "ND"}; + config.phaseName = phaseLabel; + config.FlipFinalImage = false; + + auto images = ops.generateAnnotatedIPFDensity(config); + + // Sanitize phase name for filename + std::string safeName = phaseLabel; + for(auto& c : safeName) + { + if(c == '/' || c == '\\' || c == ' ' || c == '(' || c == ')') + { + c = '_'; + } + } + + // Images are RGB (3 components), canvasDim x canvasDim + int canvasDim = static_cast(static_cast(imageWidth) * 1.5f); + std::array dirLabels = {"RD", "TD", "ND"}; + for(size_t i = 0; i < images.size(); i++) + { + std::ostringstream filePath; + filePath << outputDir << "/" << safeName << "_IPF_" << dirLabels[i] << ".png"; + auto result = PngWriter::WriteColorImage(filePath.str(), canvasDim, canvasDim, 3, images[i]->data()); + if(result.first < 0) + { + std::cerr << " ERROR writing " << filePath.str() << ": " << result.second << std::endl; + } + else + { + std::cout << " Wrote: " << filePath.str() << std::endl; + } + } +} + +// ----------------------------------------------------------------------- +// Holds orientation data extracted from an EBSD file, grouped by phase. +// ----------------------------------------------------------------------- +struct PhaseData +{ + std::string phaseName; + unsigned int laueOpsIndex = ebsdlib::CrystalStructure::UnknownCrystalStructure; + ebsdlib::FloatArrayType::Pointer eulers; +}; + +// ----------------------------------------------------------------------- +// Read a .ang file and return per-phase orientation data. +// ANG files store Euler angles in radians. +// ----------------------------------------------------------------------- +std::vector readAngFile(const std::string& filePath) +{ + AngReader reader; + reader.setFileName(filePath); + int err = reader.readFile(); + if(err < 0) + { + std::cerr << "ERROR: Failed to read .ang file: " << filePath << std::endl; + return {}; + } + + size_t totalPoints = reader.getNumberOfElements(); + std::cout << " Read " << totalPoints << " data points (" << reader.getXDimension() << " x " << reader.getYDimension() << ")" << std::endl; + + float* phi1 = reader.getPhi1Pointer(false); + float* phi = reader.getPhiPointer(false); + float* phi2 = reader.getPhi2Pointer(false); + int* phaseData = reader.getPhaseDataPointer(false); + + std::vector phases = reader.getPhaseVector(); + + // Build a map from phase index to LaueOps index and phase name. + // ANG phase indices are 1-based. + std::map phaseToLaueOps; + std::map phaseToName; + for(const auto& phase : phases) + { + int idx = phase->getPhaseIndex(); + phaseToLaueOps[idx] = phase->determineOrientationOpsIndex(); + std::string name = phase->getMaterialName(); + if(name.empty()) + { + name = "Phase_" + std::to_string(idx); + } + phaseToName[idx] = name; + std::cout << " Phase " << idx << ": " << name << " (LaueOps index: " << phaseToLaueOps[idx] << ")" << std::endl; + } + + // Group Euler angles by phase. + // ANG phase data uses 0 for unindexed points; map those to phase 1 + // when phase 1 exists (consistent with make_ipf.cpp behavior). + std::map> phaseEulerMap; + for(size_t i = 0; i < totalPoints; i++) + { + int p = phaseData[i]; + if(p < 1 && phaseToLaueOps.find(1) != phaseToLaueOps.end()) + { + p = 1; + } + if(phaseToLaueOps.find(p) == phaseToLaueOps.end()) + { + continue; + } + if(phaseToLaueOps[p] >= ebsdlib::CrystalStructure::LaueGroupEnd) + { + continue; + } + phaseEulerMap[p].push_back(phi1[i]); + phaseEulerMap[p].push_back(phi[i]); + phaseEulerMap[p].push_back(phi2[i]); + } + + // Convert grouped data into PhaseData structs + std::vector result; + for(auto& [phaseIdx, eulerVec] : phaseEulerMap) + { + size_t numOrientations = eulerVec.size() / 3; + if(numOrientations == 0) + { + continue; + } + + PhaseData pd; + pd.phaseName = phaseToName[phaseIdx]; + pd.laueOpsIndex = phaseToLaueOps[phaseIdx]; + + std::vector cDims = {3}; + pd.eulers = ebsdlib::FloatArrayType::CreateArray(numOrientations, cDims, "EulerAngles", true); + std::memcpy(pd.eulers->getVoidPointer(0), eulerVec.data(), eulerVec.size() * sizeof(float)); + + result.push_back(std::move(pd)); + } + + return result; +} + +// ----------------------------------------------------------------------- +// Read a .ctf file and return per-phase orientation data. +// CTF files store Euler angles in degrees; we convert to radians. +// ----------------------------------------------------------------------- +std::vector readCtfFile(const std::string& filePath) +{ + CtfReader reader; + reader.setFileName(filePath); + int err = reader.readFile(); + if(err < 0) + { + std::cerr << "ERROR: Failed to read .ctf file: " << filePath << std::endl; + return {}; + } + + size_t totalPoints = reader.getNumberOfElements(); + std::cout << " Read " << totalPoints << " data points (" << reader.getXDimension() << " x " << reader.getYDimension() << ")" << std::endl; + + float* euler1 = reader.getEuler1Pointer(); + float* euler2 = reader.getEuler2Pointer(); + float* euler3 = reader.getEuler3Pointer(); + int* phaseData = reader.getPhasePointer(); + + std::vector phases = reader.getPhaseVector(); + + // Build a map from phase index to LaueOps index and phase name. + // CTF phase indices are 1-based. + std::map phaseToLaueOps; + std::map phaseToName; + for(const auto& phase : phases) + { + int idx = phase->getPhaseIndex(); + phaseToLaueOps[idx] = phase->determineOrientationOpsIndex(); + std::string name = phase->getPhaseName(); + if(name.empty()) + { + name = "Phase_" + std::to_string(idx); + } + phaseToName[idx] = name; + std::cout << " Phase " << idx << ": " << name << " (LaueOps index: " << phaseToLaueOps[idx] << ")" << std::endl; + } + + // Group Euler angles by phase, converting degrees to radians. + // CTF phase data uses 0 for unindexed points; map those to phase 1 + // when phase 1 exists. + const float degToRad = static_cast(ebsdlib::constants::k_DegToRadD); + std::map> phaseEulerMap; + for(size_t i = 0; i < totalPoints; i++) + { + int p = phaseData[i]; + if(p < 1 && phaseToLaueOps.find(1) != phaseToLaueOps.end()) + { + p = 1; + } + if(phaseToLaueOps.find(p) == phaseToLaueOps.end()) + { + continue; + } + if(phaseToLaueOps[p] >= ebsdlib::CrystalStructure::LaueGroupEnd) + { + continue; + } + phaseEulerMap[p].push_back(euler1[i] * degToRad); + phaseEulerMap[p].push_back(euler2[i] * degToRad); + phaseEulerMap[p].push_back(euler3[i] * degToRad); + } + + // Convert grouped data into PhaseData structs + std::vector result; + for(auto& [phaseIdx, eulerVec] : phaseEulerMap) + { + size_t numOrientations = eulerVec.size() / 3; + if(numOrientations == 0) + { + continue; + } + + PhaseData pd; + pd.phaseName = phaseToName[phaseIdx]; + pd.laueOpsIndex = phaseToLaueOps[phaseIdx]; + + std::vector cDims = {3}; + pd.eulers = ebsdlib::FloatArrayType::CreateArray(numOrientations, cDims, "EulerAngles", true); + std::memcpy(pd.eulers->getVoidPointer(0), eulerVec.data(), eulerVec.size() * sizeof(float)); + + result.push_back(std::move(pd)); + } + + return result; +} + +} // namespace + +// ============================================================================= +int main(int argc, char* argv[]) +{ + if(argc < 2) + { + std::cout << "Usage: generate_ipf_from_file [output_directory]" << std::endl; + std::cout << std::endl; + std::cout << "Reads an EBSD data file and generates Inverse Pole Figure density" << std::endl; + std::cout << "images (RD, TD, ND) for each phase found in the data." << std::endl; + return 1; + } + + std::string inputFile = argv[1]; + std::filesystem::path inputPath(inputFile); + + if(!std::filesystem::exists(inputPath)) + { + std::cerr << "ERROR: Input file does not exist: " << inputFile << std::endl; + return 1; + } + + // Determine output directory + std::string outputDir; + if(argc >= 3) + { + outputDir = argv[2]; + } + else + { + outputDir = inputPath.parent_path().string(); + if(outputDir.empty()) + { + outputDir = "."; + } + } + + // Create output directory if needed + std::filesystem::create_directories(outputDir); + + // Determine file type from extension + std::string ext = inputPath.extension().string(); + for(auto& c : ext) + { + c = static_cast(std::tolower(static_cast(c))); + } + + std::cout << "============================================================" << std::endl; + std::cout << " IPF Density from EBSD File" << std::endl; + std::cout << "============================================================" << std::endl; + std::cout << " Input file: " << inputFile << std::endl; + std::cout << " File type: " << ext << std::endl; + std::cout << " Output directory: " << outputDir << std::endl; + std::cout << "============================================================" << std::endl; + std::cout << std::endl; + + // Read the file + std::vector phaseDataVec; + if(ext == ".ang") + { + std::cout << "Reading .ang file..." << std::endl; + phaseDataVec = readAngFile(inputFile); + } + else if(ext == ".ctf") + { + std::cout << "Reading .ctf file..." << std::endl; + phaseDataVec = readCtfFile(inputFile); + } + else + { + std::cerr << "ERROR: Unsupported file extension '" << ext << "'. Use .ang or .ctf" << std::endl; + return 1; + } + + if(phaseDataVec.empty()) + { + std::cerr << "ERROR: No valid phase data found in file." << std::endl; + return 1; + } + + std::cout << std::endl; + std::cout << "Found " << phaseDataVec.size() << " phase(s) with valid orientations." << std::endl; + std::cout << std::endl; + + // Image generation parameters + int imageWidth = 1024; + int imageHeight = 1024; + int lambertDim = 64; + + // Get all LaueOps + std::vector ops = LaueOps::GetAllOrientationOps(); + + // Generate IPF density images for each phase + for(const auto& pd : phaseDataVec) + { + if(pd.laueOpsIndex >= ops.size()) + { + std::cerr << " Skipping phase '" << pd.phaseName << "': invalid LaueOps index " << pd.laueOpsIndex << std::endl; + continue; + } + + generateIPFForPhase(*ops[pd.laueOpsIndex], pd.eulers.get(), outputDir, imageWidth, imageHeight, lambertDim, pd.phaseName); + std::cout << std::endl; + } + + std::cout << "============================================================" << std::endl; + std::cout << " Done! All IPF density images written to:" << std::endl; + std::cout << " " << outputDir << std::endl; + std::cout << "============================================================" << std::endl; + + return 0; +} diff --git a/Source/Apps/generate_ipf_legends.cpp b/Source/Apps/generate_ipf_legends.cpp index 705f6912..9541b9a8 100644 --- a/Source/Apps/generate_ipf_legends.cpp +++ b/Source/Apps/generate_ipf_legends.cpp @@ -17,7 +17,11 @@ #include "EbsdLib/Utilities/CanvasUtilities.hpp" #include "EbsdLib/Utilities/ColorTable.h" #include "EbsdLib/Utilities/EbsdStringUtils.hpp" -#include "EbsdLib/Utilities/TiffWriter.h" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" +#include "EbsdLib/Utilities/GriddedColorKey.hpp" +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/PngWriter.h" +#include "EbsdLib/Utilities/TSLColorKey.hpp" #include "EbsdLib/Apps/EbsdLibFileLocations.h" @@ -25,6 +29,7 @@ #include #include #include +#include #include #include #include @@ -261,8 +266,8 @@ void GenerateTestIPFImages(const std::vector& referenceDirections std::stringstream ss; ss << k_Output_Dir << EbsdStringUtils::replace(ops[phase]->getSymmetryName(), "/", "_") << "/ipf_test_image_" << static_cast(referenceDir[0]) << "_" << static_cast(referenceDir[1]) - << "_" << static_cast(referenceDir[2]) << "_" << colorNames[idx] << ".tiff"; - auto result = TiffWriter::WriteColorImage(ss.str(), 100, 100, 3, colors->getTuplePointer(0)); + << "_" << static_cast(referenceDir[2]) << "_" << colorNames[idx] << ".png"; + auto result = PngWriter::WriteColorImage(ss.str(), 100, 100, 3, colors->getTuplePointer(0)); std::cout << "IPF Colors Result: " << result.first << ": " << result.second << std::endl; idx++; } @@ -275,7 +280,7 @@ void GeneratePoleFigures(LaueOps& ops, int symType) // Read in the Quats File ConvertOrientations convertor; auto outputOrientations = convertor.execute(k_QuatsFilePath, "eulers_000_1_deg.csv", ",", "qu2eu", true); - auto poleFigureNames = ops.getDefaultPoleFigureNames(); + auto poleFigureNames = ops.getDefaultPoleFigureNames(ebsdlib::HexConvention::XParallelAStar); PoleFigureConfiguration_t config; config.eulers = outputOrientations.get(); @@ -317,13 +322,72 @@ void GeneratePoleFigures(LaueOps& ops, int symType) cleanedLabel = EbsdStringUtils::replace(cleanedLabel, ">", "]"); cleanedLabel = EbsdStringUtils::replace(cleanedLabel, "|", "_"); - ss << k_Output_Dir << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << cleanedLabel << "_pole_figure.tiff"; - auto result = TiffWriter::WriteColorImage(ss.str(), config.imageDim, config.imageDim, 3, poleFigure->getTuplePointer(0)); + ss << k_Output_Dir << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << cleanedLabel << "_pole_figure.png"; + auto result = PngWriter::WriteColorImage(ss.str(), config.imageDim, config.imageDim, 3, poleFigure->getTuplePointer(0)); std::cout << ops.getSymmetryName() << " Pole Figure Result: " << result.first << ": " << result.second << std::endl; index++; } } +// ----------------------------------------------------------------------------- +void GenerateNolzeHielscherLegends(int imageDim) +{ + std::cout << "\n=== Generating Nolze-Hielscher IPF Legends ===\n" << std::endl; + + auto allOps = LaueOps::GetAllOrientationOps(); + + // Map from LaueOps index to FundamentalSectorGeometry factory + std::vector> sectorFactories = { + ebsdlib::FundamentalSectorGeometry::hexagonalHigh, // 0: Hexagonal_High + ebsdlib::FundamentalSectorGeometry::cubicHigh, // 1: Cubic_High + ebsdlib::FundamentalSectorGeometry::hexagonalLow, // 2: Hexagonal_Low + ebsdlib::FundamentalSectorGeometry::cubicLow, // 3: Cubic_Low + ebsdlib::FundamentalSectorGeometry::triclinic, // 4: Triclinic + ebsdlib::FundamentalSectorGeometry::monoclinic, // 5: Monoclinic + ebsdlib::FundamentalSectorGeometry::orthorhombic, // 6: OrthoRhombic + ebsdlib::FundamentalSectorGeometry::tetragonalLow, // 7: Tetragonal_Low + ebsdlib::FundamentalSectorGeometry::tetragonalHigh, // 8: Tetragonal_High + ebsdlib::FundamentalSectorGeometry::trigonalLow, // 9: Trigonal_Low + ebsdlib::FundamentalSectorGeometry::trigonalHigh, // 10: Trigonal_High + }; + + (void)sectorFactories; // Per-class NH sectors are now baked into each LaueOps subclass. + + for(size_t i = 0; i < allOps.size(); i++) + { + auto& ops = *allOps[i]; + std::string symName = EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_"); + + // Generate full-circle NH legend + auto legend = ops.generateIPFTriangleLegend(imageDim, true, ebsdlib::HexConvention::XParallelAStar, ebsdlib::ColorKeyKind::NolzeHielscher, /*gridded=*/false); + std::stringstream ss; + ss << k_Output_Dir << "/" << symName << "/" << symName << "_NH_FULL.png"; + auto result = PngWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); + std::cout << ops.getSymmetryName() << " NH Full Result: " << result.first << ": " << result.second << std::endl; + + // Generate triangle-only NH legend + legend = ops.generateIPFTriangleLegend(imageDim, false, ebsdlib::HexConvention::XParallelAStar, ebsdlib::ColorKeyKind::NolzeHielscher, /*gridded=*/false); + ss.str(""); + ss << k_Output_Dir << "/" << symName << "/" << symName << "_NH.png"; + result = PngWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); + std::cout << ops.getSymmetryName() << " NH Triangle Result: " << result.first << ": " << result.second << std::endl; + + // Generate gridded NH legends (MTEX-style flat shading, 2000x2000) + constexpr int k_GriddedImageDim = 2000; + legend = ops.generateIPFTriangleLegend(k_GriddedImageDim, true, ebsdlib::HexConvention::XParallelAStar, ebsdlib::ColorKeyKind::NolzeHielscher, /*gridded=*/true); + ss.str(""); + ss << k_Output_Dir << "/" << symName << "/" << symName << "_NH_GRIDDED_FULL.png"; + result = PngWriter::WriteColorImage(ss.str(), k_GriddedImageDim, k_GriddedImageDim, 3, legend->getPointer(0)); + std::cout << ops.getSymmetryName() << " NH Gridded Full Result: " << result.first << ": " << result.second << std::endl; + + legend = ops.generateIPFTriangleLegend(k_GriddedImageDim, false, ebsdlib::HexConvention::XParallelAStar, ebsdlib::ColorKeyKind::NolzeHielscher, /*gridded=*/true); + ss.str(""); + ss << k_Output_Dir << "/" << symName << "/" << symName << "_NH_GRIDDED.png"; + result = PngWriter::WriteColorImage(ss.str(), k_GriddedImageDim, k_GriddedImageDim, 3, legend->getPointer(0)); + std::cout << ops.getSymmetryName() << " NH Gridded Triangle Result: " << result.first << ": " << result.second << std::endl; + } +} + // ----------------------------------------------------------------------------- int main(int argc, char* argv[]) { @@ -338,24 +402,24 @@ int main(int argc, char* argv[]) } std::stringstream ss; - int imageDim = 512; + int imageDim = 1500; { TrigonalOps ops; - auto legend = ops.generateIPFTriangleLegend(imageDim, true); + auto legend = ops.generateIPFTriangleLegend(imageDim, true, ebsdlib::HexConvention::XParallelAStar); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.tiff"; - auto result = TiffWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.png"; + auto result = PngWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; - legend = ops.generateIPFTriangleLegend(imageDim, false); + legend = ops.generateIPFTriangleLegend(imageDim, false, ebsdlib::HexConvention::XParallelAStar); int xStart = imageDim * 0.05F; int yStart = 0; int numCols = imageDim * 0.75F; int numRows = imageDim * 0.65F; legend = ebsdlib::CropRGBImage(legend, imageDim, imageDim, xStart, yStart, numCols, numRows); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".tiff"; - result = TiffWriter::WriteColorImage(ss.str(), numCols, numRows, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".png"; + result = PngWriter::WriteColorImage(ss.str(), numCols, numRows, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; std::vector referenceDirections = { @@ -375,16 +439,16 @@ int main(int argc, char* argv[]) { TriclinicOps ops; - auto legend = ops.generateIPFTriangleLegend(imageDim, true); + auto legend = ops.generateIPFTriangleLegend(imageDim, true, ebsdlib::HexConvention::XParallelAStar); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.tiff"; - auto result = TiffWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.png"; + auto result = PngWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; - legend = ops.generateIPFTriangleLegend(imageDim, false); + legend = ops.generateIPFTriangleLegend(imageDim, false, ebsdlib::HexConvention::XParallelAStar); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".tiff"; - result = TiffWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".png"; + result = PngWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; std::vector referenceDirections = { @@ -404,18 +468,18 @@ int main(int argc, char* argv[]) { MonoclinicOps ops; - auto legend = ops.generateIPFTriangleLegend(imageDim, true); + auto legend = ops.generateIPFTriangleLegend(imageDim, true, ebsdlib::HexConvention::XParallelAStar); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.tiff"; - auto result = TiffWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.png"; + auto result = PngWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; - legend = ops.generateIPFTriangleLegend(imageDim, false); + legend = ops.generateIPFTriangleLegend(imageDim, false, ebsdlib::HexConvention::XParallelAStar); int yCropped = imageDim * 0.6F; legend = ebsdlib::CropRGBImage(legend, imageDim, imageDim, 0, 0, imageDim, yCropped); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".tiff"; - result = TiffWriter::WriteColorImage(ss.str(), imageDim, yCropped, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".png"; + result = PngWriter::WriteColorImage(ss.str(), imageDim, yCropped, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; std::vector referenceDirections = { @@ -436,16 +500,16 @@ int main(int argc, char* argv[]) { CubicLowOps ops; - auto legend = ops.generateIPFTriangleLegend(imageDim, true); + auto legend = ops.generateIPFTriangleLegend(imageDim, true, ebsdlib::HexConvention::XParallelAStar); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.tiff"; - auto result = TiffWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.png"; + auto result = PngWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; - legend = ops.generateIPFTriangleLegend(imageDim, false); + legend = ops.generateIPFTriangleLegend(imageDim, false, ebsdlib::HexConvention::XParallelAStar); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".tiff"; - result = TiffWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".png"; + result = PngWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; std::vector referenceDirections = { @@ -465,16 +529,16 @@ int main(int argc, char* argv[]) { CubicOps ops; - auto legend = ops.generateIPFTriangleLegend(imageDim, true); + auto legend = ops.generateIPFTriangleLegend(imageDim, true, ebsdlib::HexConvention::XParallelAStar); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.tiff"; - auto result = TiffWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.png"; + auto result = PngWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; - legend = ops.generateIPFTriangleLegend(imageDim, false); + legend = ops.generateIPFTriangleLegend(imageDim, false, ebsdlib::HexConvention::XParallelAStar); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".tiff"; - result = TiffWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".png"; + result = PngWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; std::vector referenceDirections = { @@ -494,21 +558,21 @@ int main(int argc, char* argv[]) { OrthoRhombicOps ops; - auto legend = ops.generateIPFTriangleLegend(imageDim, true); + auto legend = ops.generateIPFTriangleLegend(imageDim, true, ebsdlib::HexConvention::XParallelAStar); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.tiff"; - auto result = TiffWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.png"; + auto result = PngWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; int xStart = imageDim * 0.10F; int yStart = 0; int numCols = imageDim * 0.78F; int numRows = imageDim * 0.6F; - legend = ops.generateIPFTriangleLegend(imageDim, false); + legend = ops.generateIPFTriangleLegend(imageDim, false, ebsdlib::HexConvention::XParallelAStar); legend = ebsdlib::CropRGBImage(legend, imageDim, imageDim, xStart, yStart, numCols, numRows); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".tiff"; - result = TiffWriter::WriteColorImage(ss.str(), numCols, numRows, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".png"; + result = PngWriter::WriteColorImage(ss.str(), numCols, numRows, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; std::vector referenceDirections = { @@ -528,22 +592,22 @@ int main(int argc, char* argv[]) { TetragonalOps ops; - auto legend = ops.generateIPFTriangleLegend(imageDim, true); + auto legend = ops.generateIPFTriangleLegend(imageDim, true, ebsdlib::HexConvention::XParallelAStar); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.tiff"; - auto result = TiffWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.png"; + auto result = PngWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; int xStart = imageDim * 0.10F; int yStart = 0; int numCols = imageDim * 0.78F; int numRows = imageDim * 0.6F; - legend = ops.generateIPFTriangleLegend(imageDim, false); + legend = ops.generateIPFTriangleLegend(imageDim, false, ebsdlib::HexConvention::XParallelAStar); legend = ebsdlib::CropRGBImage(legend, imageDim, imageDim, xStart, yStart, numCols, numRows); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".tiff"; - result = TiffWriter::WriteColorImage(ss.str(), numCols, numRows, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".png"; + result = PngWriter::WriteColorImage(ss.str(), numCols, numRows, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; std::vector referenceDirections = { @@ -563,21 +627,21 @@ int main(int argc, char* argv[]) { TetragonalLowOps ops; - auto legend = ops.generateIPFTriangleLegend(imageDim, true); + auto legend = ops.generateIPFTriangleLegend(imageDim, true, ebsdlib::HexConvention::XParallelAStar); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.tiff"; - auto result = TiffWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.png"; + auto result = PngWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; - legend = ops.generateIPFTriangleLegend(imageDim, false); + legend = ops.generateIPFTriangleLegend(imageDim, false, ebsdlib::HexConvention::XParallelAStar); int xStart = imageDim * 0.10F; int yStart = 0; int numCols = imageDim * 0.70F; int numRows = imageDim * 0.6F; legend = ebsdlib::CropRGBImage(legend, imageDim, imageDim, xStart, yStart, numCols, numRows); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".tiff"; - result = TiffWriter::WriteColorImage(ss.str(), numCols, numRows, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".png"; + result = PngWriter::WriteColorImage(ss.str(), numCols, numRows, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; std::vector referenceDirections = { @@ -597,21 +661,21 @@ int main(int argc, char* argv[]) { HexagonalOps ops; - auto legend = ops.generateIPFTriangleLegend(imageDim, true); + auto legend = ops.generateIPFTriangleLegend(imageDim, true, ebsdlib::HexConvention::XParallelAStar); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.tiff"; - auto result = TiffWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.png"; + auto result = PngWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; - legend = ops.generateIPFTriangleLegend(imageDim, false); + legend = ops.generateIPFTriangleLegend(imageDim, false, ebsdlib::HexConvention::XParallelAStar); int xStart = imageDim * 0.10F; int yStart = 0; int numCols = imageDim * 0.80F; int numRows = imageDim * 0.5F; legend = ebsdlib::CropRGBImage(legend, imageDim, imageDim, xStart, yStart, numCols, numRows); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".tiff"; - result = TiffWriter::WriteColorImage(ss.str(), numCols, numRows, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".png"; + result = PngWriter::WriteColorImage(ss.str(), numCols, numRows, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; std::vector referenceDirections = { @@ -631,21 +695,21 @@ int main(int argc, char* argv[]) { HexagonalLowOps ops; - auto legend = ops.generateIPFTriangleLegend(imageDim, true); + auto legend = ops.generateIPFTriangleLegend(imageDim, true, ebsdlib::HexConvention::XParallelAStar); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.tiff"; - auto result = TiffWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.png"; + auto result = PngWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; - legend = ops.generateIPFTriangleLegend(imageDim, false); + legend = ops.generateIPFTriangleLegend(imageDim, false, ebsdlib::HexConvention::XParallelAStar); int xStart = imageDim * 0.10F; int yStart = 0; int numCols = imageDim * 0.70F; int numRows = imageDim * 0.5F; legend = ebsdlib::CropRGBImage(legend, imageDim, imageDim, xStart, yStart, numCols, numRows); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".tiff"; - result = TiffWriter::WriteColorImage(ss.str(), numCols, numRows, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".png"; + result = PngWriter::WriteColorImage(ss.str(), numCols, numRows, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; std::vector referenceDirections = { @@ -665,21 +729,21 @@ int main(int argc, char* argv[]) { TrigonalLowOps ops; - auto legend = ops.generateIPFTriangleLegend(imageDim, true); + auto legend = ops.generateIPFTriangleLegend(imageDim, true, ebsdlib::HexConvention::XParallelAStar); ss.str(""); - ss << k_Output_Dir << ops.getSymmetryName() << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.tiff"; - auto result = TiffWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); + ss << k_Output_Dir << ops.getSymmetryName() << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "_FULL.png"; + auto result = PngWriter::WriteColorImage(ss.str(), imageDim, imageDim, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; - legend = ops.generateIPFTriangleLegend(imageDim, false); + legend = ops.generateIPFTriangleLegend(imageDim, false, ebsdlib::HexConvention::XParallelAStar); int xStart = imageDim * 0.00F; int yStart = 0; int numCols = imageDim * 0.90F; int numRows = imageDim * 0.65F; legend = ebsdlib::CropRGBImage(legend, imageDim, imageDim, xStart, yStart, numCols, numRows); ss.str(""); - ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".tiff"; - result = TiffWriter::WriteColorImage(ss.str(), numCols, numRows, 3, legend->getPointer(0)); + ss << k_Output_Dir << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << "/" << EbsdStringUtils::replace(ops.getSymmetryName(), "/", "_") << ".png"; + result = PngWriter::WriteColorImage(ss.str(), numCols, numRows, 3, legend->getPointer(0)); std::cout << ops.getSymmetryName() << " Result: " << result.first << ": " << result.second << std::endl; std::vector referenceDirections = { @@ -697,5 +761,7 @@ int main(int argc, char* argv[]) GeneratePoleFigures(ops, 1); } + GenerateNolzeHielscherLegends(imageDim); + return 0; } diff --git a/Source/Apps/generate_pole_figure.cpp b/Source/Apps/generate_pole_figure.cpp new file mode 100644 index 00000000..649d1723 --- /dev/null +++ b/Source/Apps/generate_pole_figure.cpp @@ -0,0 +1,441 @@ +/* ============================================================================ + * Copyright (c) 2025-2026 BlueQuartz Software, LLC + * + * Redistribution and use in source and binary forms, with or without modification, + * are permitted provided that the following conditions are met: + * + * Redistributions of source code must retain the above copyright notice, this + * list of conditions and the following disclaimer. + * + * Redistributions in binary form must reproduce the above copyright notice, this + * list of conditions and the following disclaimer in the documentation and/or + * other materials provided with the distribution. + * + * Neither the name of BlueQuartz Software, the US Air Force, nor the names of its + * contributors may be used to endorse or promote products derived from this software + * without specific prior written permission. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE + * DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR + * SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, + * OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE + * USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + * + * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ + +/** + * @file generate_pole_figure.cpp + * @brief Reads a .ctf or .ang EBSD data file and generates Pole Figure images + * for each phase found in the data. + * + * For each phase, 3 TIFF images are generated corresponding to the default pole + * figure directions for that crystal symmetry class (e.g., {001}, {011}, {111} + * for cubic). + * + * Usage: + * generate_pole_figure [output_directory] + * + * If no output directory is specified, images are written next to the input file. + */ + +#include "EbsdLib/Core/EbsdDataArray.hpp" +#include "EbsdLib/Core/EbsdLibConstants.h" +#include "EbsdLib/IO/HKL/CtfPhase.h" +#include "EbsdLib/IO/HKL/CtfReader.h" +#include "EbsdLib/IO/TSL/AngPhase.h" +#include "EbsdLib/IO/TSL/AngReader.h" +#include "EbsdLib/LaueOps/LaueOps.h" +#include "EbsdLib/Utilities/CanvasUtilities.hpp" +#include "EbsdLib/Utilities/EbsdStringUtils.hpp" +#include "EbsdLib/Utilities/PngWriter.h" +#include "EbsdLib/Utilities/PoleFigureUtilities.h" + +#include +#include +#include +#include +#include +#include +#include +#include +#include + +using namespace ebsdlib; + +namespace +{ + +// ----------------------------------------------------------------------- +// Holds orientation data extracted from an EBSD file, grouped by phase. +// ----------------------------------------------------------------------- +struct PhaseData +{ + std::string phaseName; + unsigned int laueOpsIndex = ebsdlib::CrystalStructure::UnknownCrystalStructure; + ebsdlib::FloatArrayType::Pointer eulers; +}; + +// ----------------------------------------------------------------------- +// Determine whether a LaueOps class uses hexagonal-style pole figure +// annotations (6-fold or 3-fold symmetry) vs. cubic-style (everything else). +// Returns 2 for hexagonal-style, 1 for cubic-style. +// ----------------------------------------------------------------------- +int getPoleFigureAnnotationType(unsigned int laueOpsIndex) +{ + // Hexagonal High, Hexagonal Low, Trigonal High use hexagonal annotations + if(laueOpsIndex == ebsdlib::CrystalStructure::Hexagonal_High || laueOpsIndex == ebsdlib::CrystalStructure::Hexagonal_Low || laueOpsIndex == ebsdlib::CrystalStructure::Trigonal_High) + { + return 2; + } + return 1; +} + +// ----------------------------------------------------------------------- +// Generate and write pole figure images for a given set of Euler angles. +// ----------------------------------------------------------------------- +void generatePoleFiguresForPhase(const LaueOps& ops, unsigned int laueOpsIndex, ebsdlib::FloatArrayType* eulers, const std::string& outputDir, int imageDim, const std::string& phaseLabel) +{ + std::string className = ops.getSymmetryName(); + std::cout << "Generating pole figures for phase: " << phaseLabel << " (" << className << ", " << eulers->getNumberOfTuples() << " orientations)" << std::endl; + + auto poleFigureNames = ops.getDefaultPoleFigureNames(ebsdlib::HexConvention::XParallelAStar); + + PoleFigureConfiguration_t config; + config.eulers = eulers; + config.imageDim = imageDim; + config.lambertDim = 64; + config.numColors = 32; + config.minScale = 0.0; + config.maxScale = 0.0; // 0 = auto-scale + config.sphereRadius = 1.0F; + config.discrete = false; + config.discreteHeatMap = false; + config.labels = {poleFigureNames[0], poleFigureNames[1], poleFigureNames[2]}; + config.order = {0, 1, 2}; + config.phaseName = phaseLabel; + + std::vector poleFigures = ops.generatePoleFigure(config); + + // Sanitize phase name for use as a filename + std::string safeName = phaseLabel; + for(auto& c : safeName) + { + if(c == '/' || c == '\\' || c == ' ' || c == '(' || c == ')') + { + c = '_'; + } + } + + int symType = getPoleFigureAnnotationType(laueOpsIndex); + + for(size_t i = 0; i < poleFigures.size(); i++) + { + // Mirror the image across the X axis (algorithm uses +Y down, we want +Y up) + poleFigures[i] = ebsdlib::MirrorImage(poleFigures[i].get(), config.imageDim); + + // Overlay the standard projection annotations + if(symType == 1) + { + poleFigures[i] = ebsdlib::DrawStandardCubicProjection(poleFigures[i], config.imageDim, config.imageDim); + } + else if(symType == 2) + { + poleFigures[i] = ebsdlib::DrawStandardHexagonalProjection(poleFigures[i], config.imageDim, config.imageDim); + } + + // Clean up the label for use as a filename + std::string cleanedLabel = EbsdStringUtils::replace(config.labels[i], "<", "["); + cleanedLabel = EbsdStringUtils::replace(cleanedLabel, ">", "]"); + cleanedLabel = EbsdStringUtils::replace(cleanedLabel, "|", "_"); + + std::ostringstream filePath; + filePath << outputDir << "/" << safeName << "_PF_" << cleanedLabel << ".png"; + auto result = PngWriter::WriteColorImage(filePath.str(), config.imageDim, config.imageDim, 3, poleFigures[i]->getTuplePointer(0)); + if(result.first < 0) + { + std::cerr << " ERROR writing " << filePath.str() << ": " << result.second << std::endl; + } + else + { + std::cout << " Wrote: " << filePath.str() << std::endl; + } + } +} + +// ----------------------------------------------------------------------- +// Read a .ang file and return per-phase orientation data. +// ----------------------------------------------------------------------- +std::vector readAngFile(const std::string& filePath) +{ + AngReader reader; + reader.setFileName(filePath); + int err = reader.readFile(); + if(err < 0) + { + std::cerr << "ERROR: Failed to read .ang file: " << filePath << std::endl; + return {}; + } + + size_t totalPoints = reader.getNumberOfElements(); + std::cout << " Read " << totalPoints << " data points (" << reader.getXDimension() << " x " << reader.getYDimension() << ")" << std::endl; + + float* phi1 = reader.getPhi1Pointer(false); + float* phi = reader.getPhiPointer(false); + float* phi2 = reader.getPhi2Pointer(false); + int* phaseData = reader.getPhaseDataPointer(false); + + std::vector phases = reader.getPhaseVector(); + + std::map phaseToLaueOps; + std::map phaseToName; + for(const auto& phase : phases) + { + int idx = phase->getPhaseIndex(); + phaseToLaueOps[idx] = phase->determineOrientationOpsIndex(); + std::string name = phase->getMaterialName(); + if(name.empty()) + { + name = "Phase_" + std::to_string(idx); + } + phaseToName[idx] = name; + std::cout << " Phase " << idx << ": " << name << " (LaueOps index: " << phaseToLaueOps[idx] << ")" << std::endl; + } + + // Group Euler angles by phase (ANG files: radians, phase 0 → phase 1) + std::map> phaseEulerMap; + for(size_t i = 0; i < totalPoints; i++) + { + int p = phaseData[i]; + if(p < 1 && phaseToLaueOps.find(1) != phaseToLaueOps.end()) + { + p = 1; + } + if(phaseToLaueOps.find(p) == phaseToLaueOps.end()) + { + continue; + } + if(phaseToLaueOps[p] >= ebsdlib::CrystalStructure::LaueGroupEnd) + { + continue; + } + phaseEulerMap[p].push_back(phi1[i]); + phaseEulerMap[p].push_back(phi[i]); + phaseEulerMap[p].push_back(phi2[i]); + } + + std::vector result; + for(auto& [phaseIdx, eulerVec] : phaseEulerMap) + { + size_t numOrientations = eulerVec.size() / 3; + if(numOrientations == 0) + { + continue; + } + + PhaseData pd; + pd.phaseName = phaseToName[phaseIdx]; + pd.laueOpsIndex = phaseToLaueOps[phaseIdx]; + + std::vector cDims = {3}; + pd.eulers = ebsdlib::FloatArrayType::CreateArray(numOrientations, cDims, "EulerAngles", true); + std::memcpy(pd.eulers->getVoidPointer(0), eulerVec.data(), eulerVec.size() * sizeof(float)); + + result.push_back(std::move(pd)); + } + + return result; +} + +// ----------------------------------------------------------------------- +// Read a .ctf file and return per-phase orientation data. +// CTF files store Euler angles in degrees; we convert to radians. +// ----------------------------------------------------------------------- +std::vector readCtfFile(const std::string& filePath) +{ + CtfReader reader; + reader.setFileName(filePath); + int err = reader.readFile(); + if(err < 0) + { + std::cerr << "ERROR: Failed to read .ctf file: " << filePath << std::endl; + return {}; + } + + size_t totalPoints = reader.getNumberOfElements(); + std::cout << " Read " << totalPoints << " data points (" << reader.getXDimension() << " x " << reader.getYDimension() << ")" << std::endl; + + float* euler1 = reader.getEuler1Pointer(); + float* euler2 = reader.getEuler2Pointer(); + float* euler3 = reader.getEuler3Pointer(); + int* phaseData = reader.getPhasePointer(); + + std::vector phases = reader.getPhaseVector(); + + std::map phaseToLaueOps; + std::map phaseToName; + for(const auto& phase : phases) + { + int idx = phase->getPhaseIndex(); + phaseToLaueOps[idx] = phase->determineOrientationOpsIndex(); + std::string name = phase->getPhaseName(); + if(name.empty()) + { + name = "Phase_" + std::to_string(idx); + } + phaseToName[idx] = name; + std::cout << " Phase " << idx << ": " << name << " (LaueOps index: " << phaseToLaueOps[idx] << ")" << std::endl; + } + + // Group Euler angles by phase, converting degrees to radians (CTF phase 0 → phase 1) + const float degToRad = static_cast(ebsdlib::constants::k_DegToRadD); + std::map> phaseEulerMap; + for(size_t i = 0; i < totalPoints; i++) + { + int p = phaseData[i]; + if(p < 1 && phaseToLaueOps.find(1) != phaseToLaueOps.end()) + { + p = 1; + } + if(phaseToLaueOps.find(p) == phaseToLaueOps.end()) + { + continue; + } + if(phaseToLaueOps[p] >= ebsdlib::CrystalStructure::LaueGroupEnd) + { + continue; + } + phaseEulerMap[p].push_back(euler1[i] * degToRad); + phaseEulerMap[p].push_back(euler2[i] * degToRad); + phaseEulerMap[p].push_back(euler3[i] * degToRad); + } + + std::vector result; + for(auto& [phaseIdx, eulerVec] : phaseEulerMap) + { + size_t numOrientations = eulerVec.size() / 3; + if(numOrientations == 0) + { + continue; + } + + PhaseData pd; + pd.phaseName = phaseToName[phaseIdx]; + pd.laueOpsIndex = phaseToLaueOps[phaseIdx]; + + std::vector cDims = {3}; + pd.eulers = ebsdlib::FloatArrayType::CreateArray(numOrientations, cDims, "EulerAngles", true); + std::memcpy(pd.eulers->getVoidPointer(0), eulerVec.data(), eulerVec.size() * sizeof(float)); + + result.push_back(std::move(pd)); + } + + return result; +} + +} // namespace + +// ============================================================================= +int main(int argc, char* argv[]) +{ + if(argc < 2) + { + std::cout << "Usage: generate_pole_figure [output_directory]" << std::endl; + std::cout << std::endl; + std::cout << "Reads an EBSD data file and generates Pole Figure images" << std::endl; + std::cout << "for each phase found in the data." << std::endl; + return 1; + } + + std::string inputFile = argv[1]; + std::filesystem::path inputPath(inputFile); + + if(!std::filesystem::exists(inputPath)) + { + std::cerr << "ERROR: Input file does not exist: " << inputFile << std::endl; + return 1; + } + + std::string outputDir; + if(argc >= 3) + { + outputDir = argv[2]; + } + else + { + outputDir = inputPath.parent_path().string(); + if(outputDir.empty()) + { + outputDir = "."; + } + } + + std::filesystem::create_directories(outputDir); + + std::string ext = inputPath.extension().string(); + std::transform(ext.begin(), ext.end(), ext.begin(), [](unsigned char c) { return static_cast(std::tolower(c)); }); + + std::cout << "============================================================" << std::endl; + std::cout << " Pole Figure Generator from EBSD Data" << std::endl; + std::cout << "============================================================" << std::endl; + std::cout << " Input file: " << inputFile << std::endl; + std::cout << " File type: " << ext << std::endl; + std::cout << " Output directory: " << outputDir << std::endl; + std::cout << "============================================================" << std::endl; + std::cout << std::endl; + + // Read the file + std::vector phaseDataVec; + if(ext == ".ang") + { + std::cout << "Reading .ang file..." << std::endl; + phaseDataVec = readAngFile(inputFile); + } + else if(ext == ".ctf") + { + std::cout << "Reading .ctf file..." << std::endl; + phaseDataVec = readCtfFile(inputFile); + } + else + { + std::cerr << "ERROR: Unsupported file extension '" << ext << "'. Use .ang or .ctf" << std::endl; + return 1; + } + + if(phaseDataVec.empty()) + { + std::cerr << "ERROR: No valid phase data found in file." << std::endl; + return 1; + } + + std::cout << std::endl; + std::cout << "Found " << phaseDataVec.size() << " phase(s) with valid orientations." << std::endl; + std::cout << std::endl; + + int imageDim = 512; + + std::vector ops = LaueOps::GetAllOrientationOps(); + + for(const auto& pd : phaseDataVec) + { + if(pd.laueOpsIndex >= ops.size()) + { + std::cerr << " Skipping phase '" << pd.phaseName << "': invalid LaueOps index " << pd.laueOpsIndex << std::endl; + continue; + } + + generatePoleFiguresForPhase(*ops[pd.laueOpsIndex], pd.laueOpsIndex, pd.eulers.get(), outputDir, imageDim, pd.phaseName); + std::cout << std::endl; + } + + std::cout << "============================================================" << std::endl; + std::cout << " Done! All pole figure images written to:" << std::endl; + std::cout << " " << outputDir << std::endl; + std::cout << "============================================================" << std::endl; + + return 0; +} diff --git a/Source/Apps/make_ipf.cpp b/Source/Apps/make_ipf.cpp index c856c6e3..72a6a6f7 100644 --- a/Source/Apps/make_ipf.cpp +++ b/Source/Apps/make_ipf.cpp @@ -1,37 +1,45 @@ +#include #include #include +#include #include #include #include #include #include "EbsdLib/Core/EbsdLibConstants.h" +#include "EbsdLib/IO/HKL/CtfPhase.h" +#include "EbsdLib/IO/HKL/CtfReader.h" #include "EbsdLib/IO/TSL/AngPhase.h" #include "EbsdLib/IO/TSL/AngReader.h" #include "EbsdLib/LaueOps/LaueOps.h" #include "EbsdLib/Utilities/ColorTable.h" -#include "EbsdLib/Utilities/TiffWriter.h" - -class Ang2IPF; +#include "EbsdLib/Utilities/IColorKey.hpp" +#include "EbsdLib/Utilities/PUCMColorKey.hpp" +#include "EbsdLib/Utilities/PngWriter.h" +#include "EbsdLib/Utilities/TSLColorKey.hpp" using FloatVec3Type = std::array; using namespace ebsdlib; /** - * @brief The GenerateIPFColorsImpl class implements a threaded algorithm that computes the IPF - * colors for each element in a geometry + * @brief The GenerateIPFColorsImpl class computes the IPF colors for each element in a geometry. + * Uses LaueOps indices directly so it works with both .ang and .ctf phase data. */ class GenerateIPFColorsImpl { public: - GenerateIPFColorsImpl(Matrix3X1F& referenceDir, const std::vector& eulers, int32_t* phases, std::vector& crystalStructures, bool* goodVoxels, uint8_t* colors) + GenerateIPFColorsImpl(Matrix3X1F& referenceDir, const std::vector& eulers, int32_t* phases, const std::vector& laueOpsIndices, bool* goodVoxels, uint8_t* colors, + std::vector ops, ebsdlib::ColorKeyKind kind) : m_ReferenceDir(referenceDir) , m_CellEulerAngles(eulers) , m_CellPhases(phases) - , m_PhaseInfos(crystalStructures) + , m_LaueOpsIndices(laueOpsIndices) , m_GoodVoxels(goodVoxels) , m_CellIPFColors(colors) + , m_Ops(std::move(ops)) + , m_Kind(kind) { } @@ -39,20 +47,14 @@ class GenerateIPFColorsImpl void run() const { - std::vector ops = LaueOps::GetAllOrientationOps(); + const std::vector& ops = m_Ops; double refDir[3] = {m_ReferenceDir[0], m_ReferenceDir[1], m_ReferenceDir[2]}; double dEuler[3] = {0.0, 0.0, 0.0}; ebsdlib::Rgb argb = 0x00000000; int32_t phase = 0; bool calcIPF = false; size_t index = 0; - int32_t numPhases = static_cast(m_PhaseInfos.size()); - - std::vector laueOpsIndex(m_PhaseInfos.size()); - for(size_t i = 0; i < laueOpsIndex.size(); i++) - { - laueOpsIndex[i] = m_PhaseInfos[i]->determineOrientationOpsIndex(); - } + int32_t numPhases = static_cast(m_LaueOpsIndices.size()); size_t totalPoints = m_CellEulerAngles.size() / 3; for(size_t i = 0; i < totalPoints; i++) @@ -66,30 +68,24 @@ class GenerateIPFColorsImpl dEuler[1] = m_CellEulerAngles[index + 1]; dEuler[2] = m_CellEulerAngles[index + 2]; - // Make sure we are using a valid Euler Angles with valid crystal symmetry calcIPF = true; if(nullptr != m_GoodVoxels) { calcIPF = m_GoodVoxels[i]; } - // Sanity check the phase data to make sure we do not walk off the end of the array if(phase >= numPhases) { - // m_Filter->incrementPhaseWarningCount(); std::cout << "phase > number of phases" << std::endl; } - size_t currentLaueOpsIndex = laueOpsIndex[phase]; + size_t currentLaueOpsIndex = m_LaueOpsIndices[phase]; if(phase < numPhases && calcIPF && currentLaueOpsIndex < ebsdlib::CrystalStructure::LaueGroupEnd) { - argb = ops[currentLaueOpsIndex]->generateIPFColor(dEuler, refDir, false); + argb = ops[currentLaueOpsIndex]->generateIPFColor(dEuler, refDir, false, m_Kind); m_CellIPFColors[index] = static_cast(ebsdlib::RgbColor::dRed(argb)); m_CellIPFColors[index + 1] = static_cast(ebsdlib::RgbColor::dGreen(argb)); m_CellIPFColors[index + 2] = static_cast(ebsdlib::RgbColor::dBlue(argb)); - - // std::cout << (int32_t)(m_CellIPFColors[index]) << "\t" << (int32_t)(m_CellIPFColors[index + 1]) << (int32_t)(m_CellIPFColors[index + 2]) << m_CellEulerAngles[index] << "\t" - // << m_CellEulerAngles[index + 1] << "\t" << m_CellEulerAngles[index + 2] << std::endl; } } } @@ -98,120 +94,195 @@ class GenerateIPFColorsImpl Matrix3X1F m_ReferenceDir; const std::vector& m_CellEulerAngles; int32_t* m_CellPhases; - std::vector m_PhaseInfos; + std::vector m_LaueOpsIndices; bool* m_GoodVoxels; uint8_t* m_CellIPFColors; + std::vector m_Ops; + ebsdlib::ColorKeyKind m_Kind; }; // ----------------------------------------------------------------------------- -class Ang2IPF +// Reads a .ang file and generates an IPF color map image. +// ----------------------------------------------------------------------------- +int32_t executeAng(const std::string& filepath, const std::string& outputFile, Matrix3X1F& refDir, const std::vector& ops, ebsdlib::ColorKeyKind kind) { -public: - Ang2IPF() + AngReader reader; + reader.setFileName(filepath); + int32_t err = reader.readFile(); + if(err < 0) { + std::cerr << "Error reading .ang file: " << filepath << std::endl; + return err; } - ~Ang2IPF() = default; - Ang2IPF(const Ang2IPF&) = delete; // Copy Constructor Not Implemented - Ang2IPF(Ang2IPF&&) = delete; // Move Constructor Not Implemented - Ang2IPF& operator=(const Ang2IPF&) = delete; // Copy Assignment Not Implemented - Ang2IPF& operator=(Ang2IPF&&) = delete; // Move Assignment Not Implemented + std::vector dims = {reader.getXDimension(), reader.getYDimension()}; + size_t totalPoints = reader.getNumberOfElements(); - Matrix3X1F m_ReferenceDir = {0.0f, 0.0f, 1.0f}; + // Build LaueOps index vector. Insert a dummy at index 0 since ANG phases are 1-based. + std::vector angPhases = reader.getPhaseVector(); + std::vector laueOpsIndices; + laueOpsIndices.push_back(0); // Dummy for index 0 + for(const auto& phase : angPhases) + { + laueOpsIndices.push_back(phase->determineOrientationOpsIndex()); + } + + Matrix3X1F normRefDir = refDir.normalize(); - /** - * @brief incrementPhaseWarningCount - */ - void incrementPhaseWarningCount() + // ANG Euler angles are in radians — interleave into a single array + float* phi1Ptr = reader.getPhi1Pointer(false); + float* phiPtr = reader.getPhiPointer(false); + float* phi2Ptr = reader.getPhi2Pointer(false); + + std::vector eulers(3 * totalPoints); + for(size_t i = 0; i < totalPoints; i++) { - m_PhaseWarningCount++; + eulers[i * 3] = phi1Ptr[i]; + eulers[i * 3 + 1] = phiPtr[i]; + eulers[i * 3 + 2] = phi2Ptr[i]; } - /** - * @brief execute - * @return - */ - int32_t execute(const std::string& filepath, const std::string& outputFile) + // Map phase 0 (unindexed) to phase 1 + int32_t* phaseData = reader.getPhaseDataPointer(false); + for(size_t i = 0; i < totalPoints; i++) { - m_PhaseWarningCount = 0; - AngReader reader; - reader.setFileName(filepath); - int32_t err = reader.readFile(); - if(err < 0) + if(phaseData[i] < 1) { - return err; + phaseData[i] = 1; } + } - std::vector dims = {reader.getXDimension(), reader.getYDimension()}; + bool* goodVoxels = nullptr; + std::vector ipfColors(totalPoints * 3, 0); + GenerateIPFColorsImpl generateIPF(normRefDir, eulers, phaseData, laueOpsIndices, goodVoxels, ipfColors.data(), ops, kind); + generateIPF.run(); - size_t totalPoints = reader.getNumberOfElements(); - std::vector crystalStructures = reader.getPhaseVector(); - crystalStructures.emplace(crystalStructures.begin(), AngPhase::New()); - // int32_t numPhase = static_cast(crystalStructures.size()); + auto error = PngWriter::WriteColorImage(outputFile, dims[0], dims[1], 3, ipfColors.data()); + if(error.first < 0) + { + std::cerr << error.second << std::endl; + } + return error.first; +} - // Make sure we are dealing with a unit 1 vector. - Matrix3X1F normRefDir = m_ReferenceDir.normalize(); // Make a copy of the reference Direction and normalize it +// ----------------------------------------------------------------------------- +// Reads a .ctf file and generates an IPF color map image. +// CTF Euler angles are in degrees and must be converted to radians. +// ----------------------------------------------------------------------------- +int32_t executeCtf(const std::string& filepath, const std::string& outputFile, Matrix3X1F& refDir, const std::vector& ops, ebsdlib::ColorKeyKind kind) +{ + CtfReader reader; + reader.setFileName(filepath); + int32_t err = reader.readFile(); + if(err < 0) + { + std::cerr << "Error reading .ctf file: " << filepath << std::endl; + return err; + } - float* phi1Ptr = reader.getPhi1Pointer(false); - float* phiPtr = reader.getPhiPointer(false); - float* phi2Ptr = reader.getPhi2Pointer(false); + std::vector dims = {reader.getXDimension(), reader.getYDimension()}; + size_t totalPoints = reader.getNumberOfElements(); - // We need to interleave the phi1, PHI, phi2 data into a single 3 component array - std::vector eulers(3 * totalPoints); + // Build LaueOps index vector. Insert a dummy at index 0 since CTF phases are 1-based. + std::vector ctfPhases = reader.getPhaseVector(); + std::vector laueOpsIndices; + laueOpsIndices.push_back(0); // Dummy for index 0 + for(const auto& phase : ctfPhases) + { + laueOpsIndices.push_back(phase->determineOrientationOpsIndex()); + } - for(size_t i = 0; i < totalPoints; i++) - { - eulers[i * 3] = phi1Ptr[i]; - eulers[i * 3 + 1] = phiPtr[i]; - eulers[i * 3 + 2] = phi2Ptr[i]; - } + Matrix3X1F normRefDir = refDir.normalize(); - int32_t* phaseData = reader.getPhaseDataPointer(false); - for(size_t i = 0; i < totalPoints; i++) - { - if(phaseData[i] < 1) - { - phaseData[i] = 1; - } - } + // CTF Euler angles are in degrees — convert to radians and interleave + float* euler1Ptr = reader.getEuler1Pointer(); + float* euler2Ptr = reader.getEuler2Pointer(); + float* euler3Ptr = reader.getEuler3Pointer(); + const float degToRad = static_cast(ebsdlib::constants::k_DegToRadD); - bool* goodVoxels = nullptr; - std::vector ipfColors(totalPoints * 3, 0); - GenerateIPFColorsImpl generateIPF(normRefDir, eulers, phaseData, crystalStructures, goodVoxels, ipfColors.data()); - generateIPF.run(); + std::vector eulers(3 * totalPoints); + for(size_t i = 0; i < totalPoints; i++) + { + eulers[i * 3] = euler1Ptr[i] * degToRad; + eulers[i * 3 + 1] = euler2Ptr[i] * degToRad; + eulers[i * 3 + 2] = euler3Ptr[i] * degToRad; + } - std::pair error = TiffWriter::WriteColorImage(outputFile, dims[0], dims[1], 3, ipfColors.data()); - if(error.first < 0) - { - std::cout << error.second << std::endl; - } - return error.first; + // Map phase 0 (unindexed) to phase 1 + int* phaseData = reader.getPhasePointer(); + std::vector phases(totalPoints); + for(size_t i = 0; i < totalPoints; i++) + { + phases[i] = (phaseData[i] < 1) ? 1 : phaseData[i]; } -private: - int32_t m_PhaseWarningCount = {0}; -}; + bool* goodVoxels = nullptr; + std::vector ipfColors(totalPoints * 3, 0); + GenerateIPFColorsImpl generateIPF(normRefDir, eulers, phases.data(), laueOpsIndices, goodVoxels, ipfColors.data(), ops, kind); + generateIPF.run(); + + auto error = PngWriter::WriteColorImage(outputFile, dims[0], dims[1], 3, ipfColors.data()); + if(error.first < 0) + { + std::cerr << error.second << std::endl; + } + return error.first; +} // ----------------------------------------------------------------------------- int main(int argc, char* argv[]) { - - if(argc != 3) + if(argc < 3 || argc > 4) { - std::cout << "Program needs file path to .ang file and output image file" << std::endl; + std::cout << "Usage: make_ipf [tsl|pucm]" << std::endl; + std::cout << " Optional 3rd argument selects the IPF color key for every Laue class." << std::endl; + std::cout << " Default is tsl." << std::endl; return 1; } - std::cout << "WARNING: This program makes NO attempt to fix the sample and crystal reference frame issue that is common on TSL systems." << std::endl; + + std::cout << "WARNING: This program makes NO attempt to fix the sample and crystal reference frame issue." << std::endl; std::cout << "WARNING: You are probably *not* seeing the correct colors. Use something like DREAM.3D to fully correct for these issues." << std::endl; + std::string filePath(argv[1]); std::string outPath(argv[2]); - std::cout << "Creating IPF Color Map for " << filePath << std::endl; + std::string colorKeyName = (argc == 4) ? std::string(argv[3]) : std::string("tsl"); + std::transform(colorKeyName.begin(), colorKeyName.end(), colorKeyName.begin(), [](unsigned char c) { return static_cast(std::tolower(c)); }); + if(colorKeyName != "tsl" && colorKeyName != "pucm") + { + std::cerr << "ERROR: unknown color key '" << colorKeyName << "', use 'tsl' or 'pucm'" << std::endl; + return 1; + } + + std::vector ops = LaueOps::GetAllOrientationOps(); + const ebsdlib::ColorKeyKind kind = (colorKeyName == "pucm") ? ebsdlib::ColorKeyKind::PUCM : ebsdlib::ColorKeyKind::TSL; + + // Determine file type from extension + std::string ext = std::filesystem::path(filePath).extension().string(); + std::transform(ext.begin(), ext.end(), ext.begin(), [](unsigned char c) { return static_cast(std::tolower(c)); }); + + Matrix3X1F referenceDir = {0.0f, 0.0f, 1.0f}; + + std::cout << "Creating IPF Color Map (" << colorKeyName << ") for " << filePath << std::endl; + + int32_t result = -1; + if(ext == ".ang") + { + result = executeAng(filePath, outPath, referenceDir, ops, kind); + } + else if(ext == ".ctf") + { + result = executeCtf(filePath, outPath, referenceDir, ops, kind); + } + else + { + std::cerr << "ERROR: Unsupported file extension '" << ext << "'. Use .ang or .ctf" << std::endl; + return 1; + } - Ang2IPF Ang2IPF; - if(Ang2IPF.execute(filePath, outPath) < 0) + if(result < 0) { - std::cout << "Error creating the IPF Color map" << std::endl; + std::cerr << "Error creating the IPF Color map" << std::endl; } - return 0; + return result < 0 ? 1 : 0; } diff --git a/Source/Apps/make_pole_figure.cpp b/Source/Apps/make_pole_figure.cpp new file mode 100644 index 00000000..c5a63c24 --- /dev/null +++ b/Source/Apps/make_pole_figure.cpp @@ -0,0 +1,350 @@ +/* ============================================================================ + * make_pole_figure + * + * Reads a .ang or .ctf EBSD data file and produces, for each indexed phase, a + * single composite pole-figure PNG using EbsdLib's PoleFigureCompositor. + * Output is a horizontal layout (3 default plane families + legend side by + * side) using continuous color-intensity rendering (Lambert-projection + * density, not discrete points). + * + * Output filenames: /EbsdLib_Phase_.png where N is the phase + * index from the input file (1-based). + * + * Usage: + * make_pole_figure + * + * Example: + * make_pole_figure /path/to/12.ang /path/to/Output/12/PoleFigures + * -> writes /path/to/Output/12/PoleFigures/EbsdLib_Phase_1.png (etc.) + * ============================================================================ */ +#include "EbsdLib/Core/EbsdDataArray.hpp" +#include "EbsdLib/Core/EbsdLibConstants.h" +#include "EbsdLib/IO/HKL/CtfPhase.h" +#include "EbsdLib/IO/HKL/CtfReader.h" +#include "EbsdLib/IO/TSL/AngPhase.h" +#include "EbsdLib/IO/TSL/AngReader.h" +#include "EbsdLib/LaueOps/LaueOps.h" +#include "EbsdLib/Utilities/PngWriter.h" +#include "EbsdLib/Utilities/PoleFigureCompositor.h" + +#include +#include +#include +#include +#include +#include +#include +#include +#include + +using namespace ebsdlib; + +namespace +{ +struct PhaseData +{ + int phaseIndex = 0; + std::string phaseName; + unsigned int laueOpsIndex = ebsdlib::CrystalStructure::UnknownCrystalStructure; + ebsdlib::FloatArrayType::Pointer eulers; +}; + +// --------------------------------------------------------------------------- +// Read a TSL .ang file. Eulers are already in radians. +// Phase 0 (unindexed) is remapped to phase 1 (matching the existing apps' +// behavior) so users with single-phase scans get all data. +// --------------------------------------------------------------------------- +std::vector readAngFile(const std::string& filePath) +{ + AngReader reader; + reader.setFileName(filePath); + int err = reader.readFile(); + if(err < 0) + { + std::cerr << "ERROR: Failed to read .ang file: " << filePath << std::endl; + return {}; + } + + size_t totalPoints = reader.getNumberOfElements(); + std::cout << " Read " << totalPoints << " data points (" << reader.getXDimension() << " x " << reader.getYDimension() << ")" << std::endl; + + float* phi1 = reader.getPhi1Pointer(false); + float* phi = reader.getPhiPointer(false); + float* phi2 = reader.getPhi2Pointer(false); + int* phaseDataArr = reader.getPhaseDataPointer(false); + float* ci = reader.getConfidenceIndexPointer(false); + + std::vector phases = reader.getPhaseVector(); + + std::map phaseToLaueOps; + std::map phaseToName; + for(const auto& phase : phases) + { + int idx = phase->getPhaseIndex(); + phaseToLaueOps[idx] = phase->determineOrientationOpsIndex(); + std::string name = phase->getMaterialName(); + if(name.empty()) + { + name = "Phase_" + std::to_string(idx); + } + phaseToName[idx] = name; + std::cout << " Phase " << idx << ": " << name << " (LaueOps index: " << phaseToLaueOps[idx] << ")" << std::endl; + } + + // Eulers are passed straight through to LaueOps. The legacy phi2-30° basal- + // plane shift and the 90°-about-z sample-frame rotation that used to live + // here have been removed; convention handling is now done inside LaueOps + // via config.hexConvention = XParallelA below. + std::map> phaseEulerMap; + for(size_t i = 0; i < totalPoints; i++) + { + int p = phaseDataArr[i]; + if(p < 1 && phaseToLaueOps.find(1) != phaseToLaueOps.end()) + { + p = 1; + } + if(phaseToLaueOps.find(p) == phaseToLaueOps.end()) + { + continue; + } + if(phaseToLaueOps[p] >= ebsdlib::CrystalStructure::LaueGroupEnd) + { + continue; + } + if(ci[i] > 0.1) + { + phaseEulerMap[p].push_back(phi1[i]); + phaseEulerMap[p].push_back(phi[i]); + phaseEulerMap[p].push_back(phi2[i]); + } + } + + std::vector result; + for(auto& [idx, eulerVec] : phaseEulerMap) + { + size_t numOrientations = eulerVec.size() / 3; + if(numOrientations == 0) + { + continue; + } + std::cout << " Phase " << idx << " Num. Eulers: " << numOrientations << std::endl; + PhaseData pd; + pd.phaseIndex = idx; + pd.phaseName = phaseToName[idx]; + pd.laueOpsIndex = phaseToLaueOps[idx]; + std::vector cDims = {3}; + pd.eulers = ebsdlib::FloatArrayType::CreateArray(numOrientations, cDims, "EulerAngles", true); + std::memcpy(pd.eulers->getVoidPointer(0), eulerVec.data(), eulerVec.size() * sizeof(float)); + result.push_back(std::move(pd)); + } + return result; +} + +// --------------------------------------------------------------------------- +// Read an Oxford .ctf file. Eulers are stored in degrees in the file and +// converted to radians here. +// --------------------------------------------------------------------------- +std::vector readCtfFile(const std::string& filePath) +{ + CtfReader reader; + reader.setFileName(filePath); + int err = reader.readFile(); + if(err < 0) + { + std::cerr << "ERROR: Failed to read .ctf file: " << filePath << std::endl; + return {}; + } + + size_t totalPoints = reader.getNumberOfElements(); + std::cout << " Read " << totalPoints << " data points (" << reader.getXDimension() << " x " << reader.getYDimension() << ")" << std::endl; + + float* euler1 = reader.getEuler1Pointer(); + float* euler2 = reader.getEuler2Pointer(); + float* euler3 = reader.getEuler3Pointer(); + int* phaseDataArr = reader.getPhasePointer(); + + std::vector phases = reader.getPhaseVector(); + + std::map phaseToLaueOps; + std::map phaseToName; + for(const auto& phase : phases) + { + int idx = phase->getPhaseIndex(); + phaseToLaueOps[idx] = phase->determineOrientationOpsIndex(); + std::string name = phase->getPhaseName(); + if(name.empty()) + { + name = "Phase_" + std::to_string(idx); + } + phaseToName[idx] = name; + std::cout << " Phase " << idx << ": " << name << " (LaueOps index: " << phaseToLaueOps[idx] << ")" << std::endl; + } + + const float degToRad = static_cast(ebsdlib::constants::k_DegToRadD); + std::map> phaseEulerMap; + for(size_t i = 0; i < totalPoints; i++) + { + int p = phaseDataArr[i]; + if(p < 1 && phaseToLaueOps.find(1) != phaseToLaueOps.end()) + { + p = 1; + } + if(phaseToLaueOps.find(p) == phaseToLaueOps.end()) + { + continue; + } + if(phaseToLaueOps[p] >= ebsdlib::CrystalStructure::LaueGroupEnd) + { + continue; + } + phaseEulerMap[p].push_back(euler1[i] * degToRad); + phaseEulerMap[p].push_back(euler2[i] * degToRad); + phaseEulerMap[p].push_back(euler3[i] * degToRad); + } + + std::vector result; + for(auto& [idx, eulerVec] : phaseEulerMap) + { + size_t numOrientations = eulerVec.size() / 3; + if(numOrientations == 0) + { + continue; + } + PhaseData pd; + pd.phaseIndex = idx; + pd.phaseName = phaseToName[idx]; + pd.laueOpsIndex = phaseToLaueOps[idx]; + std::vector cDims = {3}; + pd.eulers = ebsdlib::FloatArrayType::CreateArray(numOrientations, cDims, "EulerAngles", true); + std::memcpy(pd.eulers->getVoidPointer(0), eulerVec.data(), eulerVec.size() * sizeof(float)); + result.push_back(std::move(pd)); + } + return result; +} +} // namespace + +// ============================================================================= +int main(int argc, char* argv[]) +{ + if(argc != 3) + { + std::cout << "Usage: make_pole_figure " << std::endl; + std::cout << std::endl; + std::cout << "Reads an EBSD data file and produces, for each indexed phase, one" << std::endl; + std::cout << "composite pole-figure PNG using PoleFigureCompositor (horizontal layout," << std::endl; + std::cout << "color-intensity rendering). Output filenames: EbsdLib_Phase_.png" << std::endl; + return 1; + } + + const std::string inputFile = argv[1]; + const std::string outputDir = argv[2]; + + std::filesystem::path inputPath(inputFile); + if(!std::filesystem::exists(inputPath)) + { + std::cerr << "ERROR: Input file does not exist: " << inputFile << std::endl; + return 1; + } + + std::filesystem::create_directories(outputDir); + + std::string ext = inputPath.extension().string(); + std::transform(ext.begin(), ext.end(), ext.begin(), [](unsigned char c) { return static_cast(std::tolower(c)); }); + + std::cout << "============================================================" << std::endl; + std::cout << " make_pole_figure (PoleFigureCompositor / color intensity)" << std::endl; + std::cout << "============================================================" << std::endl; + std::cout << " Input: " << inputFile << std::endl; + std::cout << " Output: " << outputDir << std::endl; + std::cout << "============================================================" << std::endl; + + std::vector phaseDataVec; + if(ext == ".ang") + { + std::cout << "Reading .ang file..." << std::endl; + phaseDataVec = readAngFile(inputFile); + } + else if(ext == ".ctf") + { + std::cout << "Reading .ctf file..." << std::endl; + phaseDataVec = readCtfFile(inputFile); + } + else + { + std::cerr << "ERROR: Unsupported file extension '" << ext << "'. Use .ang or .ctf" << std::endl; + return 1; + } + + if(phaseDataVec.empty()) + { + std::cerr << "ERROR: No valid phase data found in file." << std::endl; + return 1; + } + + std::vector ops = LaueOps::GetAllOrientationOps(); + + for(const auto& pd : phaseDataVec) + { + if(pd.laueOpsIndex >= ops.size()) + { + std::cerr << " Skipping phase '" << pd.phaseName << "': invalid LaueOps index " << pd.laueOpsIndex << std::endl; + continue; + } + + LaueOps::Pointer op = ops[pd.laueOpsIndex]; + + CompositePoleFigureConfiguration_t config; + config.eulers = pd.eulers.get(); + config.imageDim = 512; + config.lambertDim = 64; + config.numColors = 32; + config.minScale = 0.0; + config.maxScale = 0.0; // 0 = auto-scale + config.sphereRadius = 1.0F; + config.discrete = false; // continuous color intensity + config.discreteHeatMap = false; // (only relevant when discrete=true) + config.flipFinalImage = true; + config.layoutType = PoleFigureLayoutType::Horizontal; + config.laueOpsIndex = static_cast(pd.laueOpsIndex); + config.phaseName = pd.phaseName; + config.phaseNumber = pd.phaseIndex; + // make_pole_figure ingests TSL .ang / Oxford .ctf files, both of which + // store orientations in the X||a (legacy / OIM-Analysis) basis. Pass that + // through to LaueOps so the convention bridge is applied internally. + config.hexConvention = ebsdlib::HexConvention::XParallelA; + config.title = pd.phaseName + " (" + op->getSymmetryName() + ")"; + + auto pfNames = op->getDefaultPoleFigureNames(config.hexConvention); + config.labels = {pfNames[0], pfNames[1], pfNames[2]}; + config.order = {0, 1, 2}; + + std::cout << std::endl; + std::cout << "Generating composite for phase " << pd.phaseIndex << " (" << pd.phaseName << ", " << op->getSymmetryName() << ", " << pd.eulers->getNumberOfTuples() << " orientations)" << std::endl; + + PoleFigureCompositor compositor; + CompositePoleFigureResult result = compositor.generateCompositeImage(config); + if(result.image == nullptr || result.width <= 0 || result.height <= 0) + { + std::cerr << " ERROR: PoleFigureCompositor returned an empty image." << std::endl; + continue; + } + + std::ostringstream filePath; + filePath << outputDir << "/EbsdLib_Phase_" << pd.phaseIndex << ".png"; + auto writeResult = PngWriter::WriteColorImage(filePath.str(), result.width, result.height, 4, result.image->data()); + if(writeResult.first < 0) + { + std::cerr << " ERROR writing " << filePath.str() << ": " << writeResult.second << std::endl; + } + else + { + std::cout << " Wrote: " << filePath.str() << " (" << result.width << " x " << result.height << ")" << std::endl; + } + } + + std::cout << std::endl; + std::cout << "============================================================" << std::endl; + std::cout << " Done." << std::endl; + std::cout << "============================================================" << std::endl; + return 0; +} diff --git a/Source/Apps/mtex_generate_legends.m b/Source/Apps/mtex_generate_legends.m new file mode 100644 index 00000000..763dd032 --- /dev/null +++ b/Source/Apps/mtex_generate_legends.m @@ -0,0 +1,162 @@ +%% mtex_generate_legends.m +% +% Generates IPF triangle legend images using MTEX for comparison with +% EbsdLib's output. Produces both the traditional TSL color key and the +% Nolze-Hielscher (HSV) color key for cubic m-3m, hexagonal 6/mmm, and +% orthorhombic mmm crystal symmetries. +% +% Usage: +% 1. Open MATLAB +% 2. Ensure MTEX is installed (see below for instructions) +% 3. Run this script: mtex_generate_legends +% +% Output files are saved as TIFF images in the specified output directory. + +%% Check for MTEX availability +if ~exist('crystalSymmetry', 'file') + fprintf('\n'); + fprintf('=============================================================\n'); + fprintf(' MTEX is not available on the MATLAB path.\n'); + fprintf('=============================================================\n'); + fprintf('\n'); + fprintf('To install MTEX:\n'); + fprintf('\n'); + fprintf(' 1. Download MTEX from: https://mtex-toolbox.github.io/download\n'); + fprintf(' 2. Extract the archive to a permanent location, e.g.:\n'); + fprintf(' /Users/mjackson/MATLAB/mtex-6.0.0\n'); + fprintf(' 3. In MATLAB, navigate to the extracted folder and run:\n'); + fprintf(' startup_mtex\n'); + fprintf(' 4. (Optional) To load MTEX automatically, add the startup\n'); + fprintf(' command to your MATLAB startup.m file:\n'); + fprintf(' edit(fullfile(userpath, ''startup.m''))\n'); + fprintf(' Then add the line:\n'); + fprintf(' run(''/path/to/mtex/startup_mtex.m'')\n'); + fprintf('\n'); + fprintf('After installing MTEX, re-run this script.\n'); + fprintf('\n'); + return; +end + +%% Configuration +outputDir = fullfile(fileparts(mfilename('fullpath')), '..', '..', 'Data', 'IPF_Legend', 'MTEX_Reference'); + +% Create output directory if it does not exist +if ~exist(outputDir, 'dir') + mkdir(outputDir); + fprintf('Created output directory: %s\n', outputDir); +end + +% Image resolution for saved figures (dots per inch) +imageDPI = 300; + +% Inverse pole figure projection direction (sample Z axis) +ipfDirection = vector3d.Z; + +%% Define the crystal symmetries to process +symmetries = struct( ... + 'name', {'Cubic', 'Hexagonal', 'Orthorhombic' }, ... + 'hm', {'m-3m', '6/mmm', 'mmm' }, ... + 'prefix', {'cubic', 'hexagonal', 'orthorhombic' } ... +); + +%% Generate IPF legends for each symmetry +for idx = 1:length(symmetries) + symName = symmetries(idx).name; + symHM = symmetries(idx).hm; + symPrefix = symmetries(idx).prefix; + + fprintf('\n--- %s (%s) ---\n', symName, symHM); + + % Create crystal symmetry object + cs = crystalSymmetry(symHM); + + %% TSL-style IPF color key + fprintf(' Generating TSL color key...\n'); + ipfKeyTSL = ipfColorKey(cs); + ipfKeyTSL.inversePoleFigureDirection = ipfDirection; + + fig1 = figure('Visible', 'off'); + plot(ipfKeyTSL); + title(sprintf('%s (%s) - TSL Color Key', symName, symHM)); + + tslFile = fullfile(outputDir, sprintf('%s_TSL_Z.png', symPrefix)); + exportgraphics(fig1, tslFile, 'Resolution', imageDPI); + fprintf(' Saved: %s\n', tslFile); + close(fig1); + + %% Nolze-Hielscher (HSV) IPF color key + fprintf(' Generating Nolze-Hielscher (HSV) color key...\n'); + ipfKeyHSV = ipfHSVKey(cs); + ipfKeyHSV.inversePoleFigureDirection = ipfDirection; + + fig2 = figure('Visible', 'off'); + plot(ipfKeyHSV); + title(sprintf('%s (%s) - Nolze-Hielscher HSV Color Key', symName, symHM)); + + hsvFile = fullfile(outputDir, sprintf('%s_NH_HSV_Z.png', symPrefix)); + exportgraphics(fig2, hsvFile, 'Resolution', imageDPI); + fprintf(' Saved: %s\n', hsvFile); + close(fig2); + + %% Also generate X and Y direction legends for cubic (the most common case) + if strcmp(symHM, 'm-3m') + % X direction - TSL + fprintf(' Generating TSL color key (X direction)...\n'); + ipfKeyTSL.inversePoleFigureDirection = vector3d.X; + fig3 = figure('Visible', 'off'); + plot(ipfKeyTSL); + title(sprintf('%s (%s) - TSL Color Key [X]', symName, symHM)); + tslFileX = fullfile(outputDir, sprintf('%s_TSL_X.png', symPrefix)); + exportgraphics(fig3, tslFileX, 'Resolution', imageDPI); + fprintf(' Saved: %s\n', tslFileX); + close(fig3); + + % Y direction - TSL + fprintf(' Generating TSL color key (Y direction)...\n'); + ipfKeyTSL.inversePoleFigureDirection = vector3d.Y; + fig4 = figure('Visible', 'off'); + plot(ipfKeyTSL); + title(sprintf('%s (%s) - TSL Color Key [Y]', symName, symHM)); + tslFileY = fullfile(outputDir, sprintf('%s_TSL_Y.png', symPrefix)); + exportgraphics(fig4, tslFileY, 'Resolution', imageDPI); + fprintf(' Saved: %s\n', tslFileY); + close(fig4); + + % X direction - NH HSV + fprintf(' Generating Nolze-Hielscher (HSV) color key (X direction)...\n'); + ipfKeyHSV.inversePoleFigureDirection = vector3d.X; + fig5 = figure('Visible', 'off'); + plot(ipfKeyHSV); + title(sprintf('%s (%s) - NH HSV Color Key [X]', symName, symHM)); + hsvFileX = fullfile(outputDir, sprintf('%s_NH_HSV_X.png', symPrefix)); + exportgraphics(fig5, hsvFileX, 'Resolution', imageDPI); + fprintf(' Saved: %s\n', hsvFileX); + close(fig5); + + % Y direction - NH HSV + fprintf(' Generating Nolze-Hielscher (HSV) color key (Y direction)...\n'); + ipfKeyHSV.inversePoleFigureDirection = vector3d.Y; + fig6 = figure('Visible', 'off'); + plot(ipfKeyHSV); + title(sprintf('%s (%s) - NH HSV Color Key [Y]', symName, symHM)); + hsvFileY = fullfile(outputDir, sprintf('%s_NH_HSV_Y.png', symPrefix)); + exportgraphics(fig6, hsvFileY, 'Resolution', imageDPI); + fprintf(' Saved: %s\n', hsvFileY); + close(fig6); + end +end + +%% Summary +fprintf('\n=============================================================\n'); +fprintf(' All IPF legend images have been saved to:\n'); +fprintf(' %s\n', outputDir); +fprintf('\n'); +fprintf(' Files generated:\n'); +listing = dir(fullfile(outputDir, '*.png')); +for k = 1:length(listing) + fprintf(' %s\n', listing(k).name); +end +fprintf('\n'); +fprintf(' Compare these reference images against the output of\n'); +fprintf(' EbsdLib''s generate_ipf_legends application.\n'); +fprintf('=============================================================\n'); diff --git a/Source/Apps/render_ebsd.cpp b/Source/Apps/render_ebsd.cpp new file mode 100644 index 00000000..9c4a7f96 --- /dev/null +++ b/Source/Apps/render_ebsd.cpp @@ -0,0 +1,481 @@ +/* ============================================================================ + * Copyright (c) 2009-2025 BlueQuartz Software, LLC + * + * SPDX-License-Identifier: BSD-3-Clause + * + * render_ebsd + * + * Reads a .ang or .ctf EBSD scan and produces, per indexed phase, a 3-PNG set: + * - composite pole figure (PoleFigureCompositor) + * - IPF map (per-pixel generateIPFColor) + * - IPF triangle legend (LaueOps::generateIPFTriangleLegend) + * + * All three outputs honor the user-supplied HexConvention and color-key + * choice. No legacy Euler pre-processing is applied; the convention plumbing + * goes through the LaueOps API. + * + * Usage: + * render_ebsd + * [--convention {x_a, x_astar}] (default x_astar) + * [--color-key {tsl, pucm, nh}] (default tsl) + * [--phase N] (default: all phases) + * [--ref-dir x,y,z] (default 0,0,1) + * [--image-dim N] [--lambert-dim N] [--legend-dim N] + * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ + +#include "Apps/render_ebsd.h" + +#include "EbsdLib/Core/EbsdDataArray.hpp" +#include "EbsdLib/Core/EbsdLibConstants.h" +#include "EbsdLib/IO/HKL/CtfPhase.h" +#include "EbsdLib/IO/HKL/CtfReader.h" +#include "EbsdLib/IO/TSL/AngPhase.h" +#include "EbsdLib/IO/TSL/AngReader.h" +#include "EbsdLib/LaueOps/LaueOps.h" +#include "EbsdLib/Utilities/ColorTable.h" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" +#include "EbsdLib/Utilities/ImageCrop.hpp" +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/PUCMColorKey.hpp" +#include "EbsdLib/Utilities/PngWriter.h" +#include "EbsdLib/Utilities/PoleFigureCompositor.h" +#include "EbsdLib/Utilities/TSLColorKey.hpp" + +#include +#include +#include +#include +#include +#include +#include +#include +#include + +namespace ebsdlib::render_ebsd +{ + +namespace +{ +struct PhaseScan +{ + int phaseIndex = 0; + std::string phaseName; + unsigned int laueOpsIndex = ebsdlib::CrystalStructure::UnknownCrystalStructure; + ebsdlib::FloatArrayType::Pointer eulers; + std::vector dims; ///< {width, height} only set for raster outputs (IPF map) + std::vector rasterPhase; + std::vector rasterEulers; +}; + +// --------------------------------------------------------------------------- +// Read .ang. No phi2-30°/90°-z pre-rotation is applied here; convention +// handling is the responsibility of LaueOps via Options::convention. +// --------------------------------------------------------------------------- +std::vector readAng(const std::string& filePath) +{ + AngReader reader; + reader.setFileName(filePath); + if(reader.readFile() < 0) + { + std::cerr << "ERROR: Failed to read .ang file: " << filePath << std::endl; + return {}; + } + + const size_t totalPoints = reader.getNumberOfElements(); + const int32_t xDim = reader.getXDimension(); + const int32_t yDim = reader.getYDimension(); + + float* phi1 = reader.getPhi1Pointer(false); + float* phi = reader.getPhiPointer(false); + float* phi2 = reader.getPhi2Pointer(false); + int* phasePtr = reader.getPhaseDataPointer(false); + float* ci = reader.getConfidenceIndexPointer(false); + + std::map phaseToLaue; + std::map phaseToName; + for(const auto& phase : reader.getPhaseVector()) + { + int idx = phase->getPhaseIndex(); + phaseToLaue[idx] = phase->determineOrientationOpsIndex(); + std::string name = phase->getMaterialName(); + if(name.empty()) + { + name = "Phase_" + std::to_string(idx); + } + phaseToName[idx] = name; + } + + // Per-phase eulers for PF + per-phase rastered IPF coords for the IPF map + std::map> phaseEulerMap; + std::map phaseScanMap; + for(auto& [idx, name] : phaseToName) + { + PhaseScan& s = phaseScanMap[idx]; + s.phaseIndex = idx; + s.phaseName = name; + s.laueOpsIndex = phaseToLaue[idx]; + s.dims = {xDim, yDim}; + s.rasterPhase.assign(totalPoints, 0); + s.rasterEulers.assign(totalPoints * 3, 0.0F); + } + + for(size_t i = 0; i < totalPoints; i++) + { + int p = phasePtr[i]; + if(p < 1 && phaseToLaue.find(1) != phaseToLaue.end()) + { + p = 1; + } + auto laueIt = phaseToLaue.find(p); + if(laueIt == phaseToLaue.end() || laueIt->second >= ebsdlib::CrystalStructure::LaueGroupEnd) + { + continue; + } + PhaseScan& s = phaseScanMap[p]; + s.rasterPhase[i] = 1; + s.rasterEulers[i * 3] = phi1[i]; + s.rasterEulers[i * 3 + 1] = phi[i]; + s.rasterEulers[i * 3 + 2] = phi2[i]; + + if(ci[i] > 0.1F) + { + phaseEulerMap[p].push_back(phi1[i]); + phaseEulerMap[p].push_back(phi[i]); + phaseEulerMap[p].push_back(phi2[i]); + } + } + + std::vector result; + for(auto& [idx, scan] : phaseScanMap) + { + auto eulIt = phaseEulerMap.find(idx); + if(eulIt == phaseEulerMap.end() || eulIt->second.empty()) + { + continue; + } + const size_t numOrientations = eulIt->second.size() / 3; + std::vector cDims = {3}; + scan.eulers = ebsdlib::FloatArrayType::CreateArray(numOrientations, cDims, "EulerAngles", true); + std::memcpy(scan.eulers->getVoidPointer(0), eulIt->second.data(), eulIt->second.size() * sizeof(float)); + result.push_back(std::move(scan)); + } + return result; +} + +// --------------------------------------------------------------------------- +// Read .ctf. CTF Eulers are in degrees on disk; convert to radians. +// --------------------------------------------------------------------------- +std::vector readCtf(const std::string& filePath) +{ + CtfReader reader; + reader.setFileName(filePath); + if(reader.readFile() < 0) + { + std::cerr << "ERROR: Failed to read .ctf file: " << filePath << std::endl; + return {}; + } + + const size_t totalPoints = reader.getNumberOfElements(); + const int32_t xDim = reader.getXDimension(); + const int32_t yDim = reader.getYDimension(); + const float degToRad = static_cast(ebsdlib::constants::k_DegToRadD); + + float* e1 = reader.getEuler1Pointer(); + float* e2 = reader.getEuler2Pointer(); + float* e3 = reader.getEuler3Pointer(); + int* phasePtr = reader.getPhasePointer(); + + std::map phaseToLaue; + std::map phaseToName; + for(const auto& phase : reader.getPhaseVector()) + { + int idx = phase->getPhaseIndex(); + phaseToLaue[idx] = phase->determineOrientationOpsIndex(); + std::string name = phase->getPhaseName(); + if(name.empty()) + { + name = "Phase_" + std::to_string(idx); + } + phaseToName[idx] = name; + } + + std::map> phaseEulerMap; + std::map phaseScanMap; + for(auto& [idx, name] : phaseToName) + { + PhaseScan& s = phaseScanMap[idx]; + s.phaseIndex = idx; + s.phaseName = name; + s.laueOpsIndex = phaseToLaue[idx]; + s.dims = {xDim, yDim}; + s.rasterPhase.assign(totalPoints, 0); + s.rasterEulers.assign(totalPoints * 3, 0.0F); + } + + for(size_t i = 0; i < totalPoints; i++) + { + int p = phasePtr[i]; + if(p < 1 && phaseToLaue.find(1) != phaseToLaue.end()) + { + p = 1; + } + auto laueIt = phaseToLaue.find(p); + if(laueIt == phaseToLaue.end() || laueIt->second >= ebsdlib::CrystalStructure::LaueGroupEnd) + { + continue; + } + PhaseScan& s = phaseScanMap[p]; + s.rasterPhase[i] = 1; + s.rasterEulers[i * 3] = e1[i] * degToRad; + s.rasterEulers[i * 3 + 1] = e2[i] * degToRad; + s.rasterEulers[i * 3 + 2] = e3[i] * degToRad; + + phaseEulerMap[p].push_back(e1[i] * degToRad); + phaseEulerMap[p].push_back(e2[i] * degToRad); + phaseEulerMap[p].push_back(e3[i] * degToRad); + } + + std::vector result; + for(auto& [idx, scan] : phaseScanMap) + { + auto eulIt = phaseEulerMap.find(idx); + if(eulIt == phaseEulerMap.end() || eulIt->second.empty()) + { + continue; + } + const size_t numOrientations = eulIt->second.size() / 3; + std::vector cDims = {3}; + scan.eulers = ebsdlib::FloatArrayType::CreateArray(numOrientations, cDims, "EulerAngles", true); + std::memcpy(scan.eulers->getVoidPointer(0), eulIt->second.data(), eulIt->second.size() * sizeof(float)); + result.push_back(std::move(scan)); + } + return result; +} + +const char* conventionToken(ebsdlib::HexConvention conv) +{ + return conv == ebsdlib::HexConvention::XParallelA ? "x_a" : "x_astar"; +} + +const char* colorKeyToken(ebsdlib::ColorKeyKind k) +{ + switch(k) + { + case ebsdlib::ColorKeyKind::TSL: + return "tsl"; + case ebsdlib::ColorKeyKind::PUCM: + return "pucm"; + case ebsdlib::ColorKeyKind::NolzeHielscher: + return "nh"; + } + return "tsl"; +} + +// Sanitize a phase name for filesystem use (lowercase, [a-z0-9_] only). +std::string sanitize(const std::string& name) +{ + std::string out; + out.reserve(name.size()); + for(char c : name) + { + if((c >= 'a' && c <= 'z') || (c >= '0' && c <= '9')) + { + out += c; + } + else if(c >= 'A' && c <= 'Z') + { + out += static_cast(c - 'A' + 'a'); + } + else if(c == ' ' || c == '-' || c == '/' || c == '\\') + { + out += '_'; + } + } + if(out.empty()) + { + out = "phase"; + } + return out; +} + +std::string makePath(const Options& opts, const PhaseScan& s, const char* kind) +{ + std::ostringstream ss; + ss << opts.outputDir << "/" << sanitize(s.phaseName) << "_phase" << s.phaseIndex << "_" << conventionToken(opts.convention) << "_" << colorKeyToken(opts.colorKey) << "_" << kind << ".png"; + return ss.str(); +} + +bool writePoleFigure(const Options& opts, PhaseScan& s, LaueOps::Pointer op, const std::string& outPath) +{ + CompositePoleFigureConfiguration_t config; + config.eulers = s.eulers.get(); + config.imageDim = opts.imageDim; + config.lambertDim = opts.lambertDim; + config.numColors = 32; + config.minScale = 0.0; + config.maxScale = 0.0; // 0 => auto + config.sphereRadius = 1.0F; + config.discrete = false; + config.discreteHeatMap = false; + config.flipFinalImage = true; + config.layoutType = PoleFigureLayoutType::Horizontal; + config.laueOpsIndex = s.laueOpsIndex; + config.phaseName = s.phaseName; + config.phaseNumber = s.phaseIndex; + // Don't bake the convention token into the title: the smoke test asserts + // PF bytes differ between conventions, and we want that difference to come + // strictly from the rendered disk content (proof the convention plumbing + // reaches LaueOps), not from rasterized title text. The output FILENAME + // already stamps the convention. + config.title = s.phaseName + " (" + op->getSymmetryName() + ")"; + config.hexConvention = opts.convention; + + auto names = op->getDefaultPoleFigureNames(opts.convention); + config.labels = {names[0], names[1], names[2]}; + config.order = {0, 1, 2}; + + PoleFigureCompositor compositor; + CompositePoleFigureResult result = compositor.generateCompositeImage(config); + if(result.image == nullptr || result.width <= 0 || result.height <= 0) + { + return false; + } + auto wr = PngWriter::WriteColorImage(outPath, result.width, result.height, 4, result.image->data()); + return wr.first >= 0; +} + +bool writeIpfMap(const Options& opts, const PhaseScan& s, LaueOps::Pointer op, const std::string& outPath) +{ + if(s.dims.size() != 2 || s.dims[0] <= 0 || s.dims[1] <= 0) + { + return false; + } + const int32_t w = s.dims[0]; + const int32_t h = s.dims[1]; + const size_t total = static_cast(w) * static_cast(h); + std::vector rgb(total * 3, 0); + + double refDir[3] = {opts.refDir[0], opts.refDir[1], opts.refDir[2]}; + double euler[3] = {0.0, 0.0, 0.0}; + for(size_t i = 0; i < total; i++) + { + if(s.rasterPhase[i] == 0) + { + continue; // not this phase / unindexed -- leave black + } + euler[0] = s.rasterEulers[i * 3]; + euler[1] = s.rasterEulers[i * 3 + 1]; + euler[2] = s.rasterEulers[i * 3 + 2]; + Rgb argb = op->generateIPFColor(euler, refDir, false, opts.colorKey); + rgb[i * 3] = static_cast(RgbColor::dRed(argb)); + rgb[i * 3 + 1] = static_cast(RgbColor::dGreen(argb)); + rgb[i * 3 + 2] = static_cast(RgbColor::dBlue(argb)); + } + auto wr = PngWriter::WriteColorImage(outPath, w, h, 3, rgb.data()); + return wr.first >= 0; +} + +bool writeLegend(const Options& opts, LaueOps::Pointer op, const std::string& outPath) +{ + auto legend = op->generateIPFTriangleLegend(opts.legendImageDim, false, opts.convention, opts.colorKey); + if(legend == nullptr) + { + return false; + } + // The legend renderer paints a small SST + label band onto a much larger + // square canvas (canvasDim x canvasDim). Trim the surrounding whitespace + // so the output PNG fills with content the way MTEX's legend export does. + // Padding is a small fixed margin around the painted region. + constexpr int k_LegendPadding = 12; + auto cropped = ebsdlib::CropImageToContent(legend.get(), opts.legendImageDim, opts.legendImageDim, /*channels*/ 3, k_LegendPadding); + if(cropped.image == nullptr) + { + return false; + } + auto wr = PngWriter::WriteColorImage(outPath, cropped.width, cropped.height, 3, cropped.image->getPointer(0)); + return wr.first >= 0; +} + +} // namespace + +Result run(const Options& opts) +{ + Result out; + + if(!std::filesystem::exists(opts.inputFile)) + { + std::cerr << "ERROR: Input file does not exist: " << opts.inputFile << std::endl; + return out; + } + + std::filesystem::create_directories(opts.outputDir); + + std::string ext = std::filesystem::path(opts.inputFile).extension().string(); + std::transform(ext.begin(), ext.end(), ext.begin(), [](unsigned char c) { return static_cast(std::tolower(c)); }); + + std::vector scans; + if(ext == ".ang") + { + scans = readAng(opts.inputFile); + } + else if(ext == ".ctf") + { + scans = readCtf(opts.inputFile); + } + else + { + std::cerr << "ERROR: Unsupported file extension '" << ext << "'. Use .ang or .ctf" << std::endl; + return out; + } + + if(scans.empty()) + { + std::cerr << "ERROR: No valid phase data found in " << opts.inputFile << std::endl; + return out; + } + + std::vector ops = LaueOps::GetAllOrientationOps(); + + bool allOk = true; + for(auto& s : scans) + { + if(opts.phaseFilter >= 0 && s.phaseIndex != opts.phaseFilter) + { + continue; + } + if(s.laueOpsIndex >= ops.size()) + { + continue; + } + LaueOps::Pointer op = ops[s.laueOpsIndex]; + + PhaseOutput po; + po.phaseIndex = s.phaseIndex; + po.phaseName = s.phaseName; + po.laueOpsIndex = s.laueOpsIndex; + po.poleFigurePath = makePath(opts, s, "PF"); + po.ipfMapPath = makePath(opts, s, "IPF"); + po.legendPath = makePath(opts, s, "LEGEND"); + + const bool pfOk = writePoleFigure(opts, s, op, po.poleFigurePath); + const bool ipfOk = writeIpfMap(opts, s, op, po.ipfMapPath); + const bool legOk = writeLegend(opts, op, po.legendPath); + po.ok = pfOk && ipfOk && legOk; + + if(!po.ok) + { + allOk = false; + std::cerr << "WARNING: phase '" << s.phaseName << "' partial outputs: PF=" << pfOk << " IPF=" << ipfOk << " LEGEND=" << legOk << std::endl; + } + out.phases.push_back(std::move(po)); + } + + out.ok = allOk && !out.phases.empty(); + return out; +} + +} // namespace ebsdlib::render_ebsd + +// CLI entry (`int main`) lives in render_ebsd_main.cpp so this TU can be +// compiled into both the standalone render_ebsd executable and the +// EbsdLibUnitTest binary without the latter colliding with Catch2's main. diff --git a/Source/Apps/render_ebsd.h b/Source/Apps/render_ebsd.h new file mode 100644 index 00000000..1ca9c5b7 --- /dev/null +++ b/Source/Apps/render_ebsd.h @@ -0,0 +1,67 @@ +/* ============================================================================ + * Copyright (c) 2009-2025 BlueQuartz Software, LLC + * + * SPDX-License-Identifier: BSD-3-Clause + * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ +#pragma once + +#include "EbsdLib/Core/EbsdLibConstants.h" + +#include +#include +#include + +namespace ebsdlib::render_ebsd +{ + +struct Options +{ + std::string inputFile; ///< .ang or .ctf path + std::string outputDir; ///< directory to write PNGs into (created if missing) + ebsdlib::HexConvention convention = ebsdlib::HexConvention::XParallelAStar; + ebsdlib::ColorKeyKind colorKey = ebsdlib::ColorKeyKind::TSL; + int phaseFilter = -1; ///< -1 = render every indexed phase; otherwise only this phase index + std::array refDir = {0.0F, 0.0F, 1.0F}; ///< Sample-frame reference direction for IPF map (default = +Z) + int imageDim = 512; ///< Per-pole-figure pixel side + int lambertDim = 64; ///< Lambert square dim used by PoleFigureCompositor + int legendImageDim = 512; ///< Pixel side of the IPF triangle legend +}; + +struct PhaseOutput +{ + int phaseIndex = 0; + std::string phaseName; + unsigned int laueOpsIndex = 0; + std::string poleFigurePath; ///< Composite pole figure PNG path (one per phase) + std::string ipfMapPath; ///< IPF map PNG path (one per phase, sample-frame raster) + std::string legendPath; ///< IPF triangle legend PNG path + bool ok = false; +}; + +struct Result +{ + std::vector phases; + bool ok = false; ///< true iff every requested phase produced all three PNGs +}; + +/** + * @brief Drive the full render matrix for a single (convention, color-key) cell. + * + * Reads the input EBSD scan, then for every indexed phase whose Laue class is + * recognized (or only `phaseFilter` if that is non-negative) emits three PNGs + * into `outputDir`: + * + * _phase___PF.png + * _phase___IPF.png + * _phase___LEGEND.png + * + * `` is `x_a` or `x_astar`; `` is `tsl`, `pucm`, or `nh`. + * + * The Euler angles read from the scan are passed to LaueOps untouched -- no + * legacy phi2 / 90°-z pre-rotation is applied. Convention plumbing flows via + * `Options::convention` into `PoleFigureCompositor`, `LaueOps::generateIPFColor`, + * and `LaueOps::generateIPFTriangleLegend`. + */ +Result run(const Options& opts); + +} // namespace ebsdlib::render_ebsd diff --git a/Source/Apps/render_ebsd_main.cpp b/Source/Apps/render_ebsd_main.cpp new file mode 100644 index 00000000..1cb33431 --- /dev/null +++ b/Source/Apps/render_ebsd_main.cpp @@ -0,0 +1,233 @@ +/* ============================================================================ + * Copyright (c) 2009-2025 BlueQuartz Software, LLC + * + * SPDX-License-Identifier: BSD-3-Clause + * + * CLI entry for render_ebsd. Parses command-line flags and dispatches to + * ebsdlib::render_ebsd::run(). The actual logic lives in render_ebsd.cpp so + * the same translation unit can be linked into the EbsdLibUnitTest binary. + * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ + +#include "Apps/render_ebsd.h" + +#include "EbsdLib/Core/EbsdLibConstants.h" + +#include +#include +#include +#include + +namespace +{ +void printUsage() +{ + std::cout << "Usage: render_ebsd " << std::endl; + std::cout << " [--convention {x_a, x_astar}] (default x_astar)" << std::endl; + std::cout << " [--color-key {tsl, pucm, nh}] (default tsl)" << std::endl; + std::cout << " [--phase N] (default: all phases)" << std::endl; + std::cout << " [--ref-dir x,y,z] (default 0,0,1)" << std::endl; + std::cout << " [--image-dim N] [--lambert-dim N] [--legend-dim N]" << std::endl; +} + +bool parseRefDir(const std::string& s, std::array& out) +{ + std::vector parts; + std::string cur; + for(char c : s) + { + if(c == ',') + { + parts.push_back(cur); + cur.clear(); + } + else + { + cur += c; + } + } + parts.push_back(cur); + if(parts.size() != 3) + { + return false; + } + try + { + out[0] = std::stof(parts[0]); + out[1] = std::stof(parts[1]); + out[2] = std::stof(parts[2]); + } catch(...) + { + return false; + } + return true; +} +} // namespace + +int main(int argc, char* argv[]) +{ + // Allow `render_ebsd --help` / `-h` with no positional args. + if(argc >= 2) + { + std::string a1 = argv[1]; + if(a1 == "--help" || a1 == "-h") + { + printUsage(); + return 0; + } + } + + if(argc < 3) + { + std::cerr << "ERROR: missing positional arguments. Need ." << std::endl; + printUsage(); + return 1; + } + + // Catch the common mistake of forgetting : argv[2] then ends up + // being a flag like "--convention", and the rest of argv would be parsed + // out of position. Reject up front with a clear message. + auto looksLikeFlag = [](const char* s) { return s != nullptr && s[0] == '-' && s[1] == '-'; }; + if(looksLikeFlag(argv[1])) + { + std::cerr << "ERROR: first positional argument must be the input .ang/.ctf file, got flag '" << argv[1] << "'." << std::endl; + printUsage(); + return 1; + } + if(looksLikeFlag(argv[2])) + { + std::cerr << "ERROR: second positional argument must be the output directory, got flag '" << argv[2] << "'." << std::endl; + std::cerr << " It looks like was omitted. Insert it before any --flag." << std::endl; + printUsage(); + return 1; + } + + ebsdlib::render_ebsd::Options opts; + opts.inputFile = argv[1]; + opts.outputDir = argv[2]; + + for(int i = 3; i < argc; i++) + { + std::string arg = argv[i]; + auto next = [&]() -> std::string { + if(i + 1 >= argc) + { + return std::string{}; + } + return std::string{argv[++i]}; + }; + if(arg == "--convention") + { + std::string v = next(); + if(v == "x_a") + { + opts.convention = ebsdlib::HexConvention::XParallelA; + } + else if(v == "x_astar") + { + opts.convention = ebsdlib::HexConvention::XParallelAStar; + } + else + { + std::cerr << "ERROR: --convention must be x_a or x_astar (got '" << v << "')" << std::endl; + return 1; + } + } + else if(arg == "--color-key") + { + std::string v = next(); + if(v == "tsl") + { + opts.colorKey = ebsdlib::ColorKeyKind::TSL; + } + else if(v == "pucm") + { + opts.colorKey = ebsdlib::ColorKeyKind::PUCM; + } + else if(v == "nh") + { + opts.colorKey = ebsdlib::ColorKeyKind::NolzeHielscher; + } + else + { + std::cerr << "ERROR: --color-key must be tsl, pucm, or nh (got '" << v << "')" << std::endl; + return 1; + } + } + else if(arg == "--phase") + { + try + { + opts.phaseFilter = std::stoi(next()); + } catch(...) + { + std::cerr << "ERROR: --phase requires an integer" << std::endl; + return 1; + } + } + else if(arg == "--ref-dir") + { + if(!parseRefDir(next(), opts.refDir)) + { + std::cerr << "ERROR: --ref-dir must be x,y,z (three comma-separated floats)" << std::endl; + return 1; + } + } + else if(arg == "--image-dim") + { + opts.imageDim = std::stoi(next()); + } + else if(arg == "--lambert-dim") + { + opts.lambertDim = std::stoi(next()); + } + else if(arg == "--legend-dim") + { + opts.legendImageDim = std::stoi(next()); + } + else if(arg == "--help" || arg == "-h") + { + printUsage(); + return 0; + } + else + { + std::cerr << "ERROR: Unknown argument '" << arg << "'" << std::endl; + printUsage(); + return 1; + } + } + + std::cout << "render_ebsd" << std::endl; + std::cout << " Input: " << opts.inputFile << std::endl; + std::cout << " Output dir: " << opts.outputDir << std::endl; + std::cout << " Convention: " << (opts.convention == ebsdlib::HexConvention::XParallelA ? "X||a" : "X||a*") << std::endl; + std::cout << " Color key: "; + switch(opts.colorKey) + { + case ebsdlib::ColorKeyKind::TSL: + std::cout << "TSL" << std::endl; + break; + case ebsdlib::ColorKeyKind::PUCM: + std::cout << "PUCM" << std::endl; + break; + case ebsdlib::ColorKeyKind::NolzeHielscher: + std::cout << "Nolze-Hielscher" << std::endl; + break; + } + + auto result = ebsdlib::render_ebsd::run(opts); + if(!result.ok) + { + std::cerr << "render_ebsd: completed with errors (" << result.phases.size() << " phases attempted)" << std::endl; + return 2; + } + std::cout << "render_ebsd: wrote outputs for " << result.phases.size() << " phase(s)" << std::endl; + for(const auto& p : result.phases) + { + std::cout << " Phase " << p.phaseIndex << " (" << p.phaseName << "): " << std::endl; + std::cout << " PF: " << p.poleFigurePath << std::endl; + std::cout << " IPF: " << p.ipfMapPath << std::endl; + std::cout << " LEGEND: " << p.legendPath << std::endl; + } + return 0; +} diff --git a/Source/EbsdLib/Core/EbsdDataArray.cpp b/Source/EbsdLib/Core/EbsdDataArray.cpp index 7a5485f1..01a26a0a 100644 --- a/Source/EbsdLib/Core/EbsdDataArray.cpp +++ b/Source/EbsdLib/Core/EbsdDataArray.cpp @@ -338,6 +338,19 @@ typename EbsdDataArray::Pointer EbsdDataArray::FromStdVector(const std::ve return p; } +// ----------------------------------------------------------------------------- +template +typename EbsdDataArray::Pointer EbsdDataArray::FromStdVector(const std::vector& vec, size_t numTuples, size_t numComps, const std::string& name) +{ + comp_dims_type cDims = {numComps}; + Pointer p = CreateArray(numTuples, cDims, name, true); + if(nullptr != p) + { + std::copy(vec.cbegin(), vec.cend(), p->begin()); + } + return p; +} + // ----------------------------------------------------------------------------- template typename EbsdDataArray::Pointer EbsdDataArray::CopyFromPointer(const T* data, size_t size, const std::string& name) diff --git a/Source/EbsdLib/Core/EbsdDataArray.hpp b/Source/EbsdLib/Core/EbsdDataArray.hpp index ee9c1d03..28f78380 100644 --- a/Source/EbsdLib/Core/EbsdDataArray.hpp +++ b/Source/EbsdLib/Core/EbsdDataArray.hpp @@ -208,6 +208,8 @@ class EbsdDataArray */ static Pointer FromStdVector(const std::vector& vec, const std::string& name); + static Pointer FromStdVector(const std::vector& vec, size_t numTuples, size_t numComps, const std::string& name); + /** * @brief FromPointer Creates a EbsdDataArray object with a DEEP COPY of the data * @param data diff --git a/Source/EbsdLib/Core/EbsdLibConstants.h b/Source/EbsdLib/Core/EbsdLibConstants.h index 619f19f3..a750f002 100644 --- a/Source/EbsdLib/Core/EbsdLibConstants.h +++ b/Source/EbsdLib/Core/EbsdLibConstants.h @@ -164,6 +164,54 @@ enum class OEM : EnumType Unknown = 8 }; +/** + * @brief Selects the Cartesian basis convention for hexagonal/trigonal + * crystal-frame computations and rendering. The two conventions differ by + * a 30° rotation about the c-axis in the basal plane and produce pole-figure + * outputs rotated 30° relative to one another for hex/trig phases. + * + * - XParallelA: real-lattice a along Cartesian X. Used by EDAX/TSL/OIM + * Analysis. Every released DREAM.3D / DREAM3DNX / SIMPL / SIMPLNX file + * stores hex/trig EulerAngles in this form by codebase guarantee. + * This is the default for all rendering APIs to preserve backward + * compatibility with existing pipelines. + * + * - XParallelAStar: reciprocal-lattice a* along Cartesian X. Used by + * Oxford/HKL acquisition systems (Channel 5, AZtec) and MTEX. + * Opt-in for users wanting MTEX-comparable visual output. + * + * Convention only affects hex/trig Laue classes — cubic, tetragonal, + * orthorhombic, monoclinic, and triclinic accept the parameter but + * ignore it internally. + * + * See Code_Review/v3_phase0_design_notes.md and + * Docs/x_parallel_a_star_convention.svg for the geometric picture and the + * full design rationale. + */ +enum class HexConvention : uint8_t +{ + NotApplicable = 0, + XParallelA = 1, + XParallelAStar = 2 +}; + +/** + * @brief Identifies which IPF coloring scheme a LaueOps subclass should use + * for generateIPFColor / generateIPFTriangleLegend dispatch. + * + * Each LaueOps subclass owns a per-class singleton for each kind (a TSL + * singleton, a PUCM singleton parameterized by its rotation point group, + * and a Nolze-Hielscher singleton parameterized by its fundamental sector). + * Callers select among them by passing the kind enum at the call site + * instead of mutating a long-lived color-key member on the LaueOps object. + */ +enum class ColorKeyKind : uint8_t +{ + TSL = 0, + PUCM = 1, + NolzeHielscher = 2 +}; + namespace CellData { EbsdLib_macOS_NO_EXPORT inline constexpr EbsdStringLiteral EulerAngles("EulerAngles"); diff --git a/Source/EbsdLib/LaueOps/CubicLowOps.cpp b/Source/EbsdLib/LaueOps/CubicLowOps.cpp index c2b158f2..575aed6a 100644 --- a/Source/EbsdLib/LaueOps/CubicLowOps.cpp +++ b/Source/EbsdLib/LaueOps/CubicLowOps.cpp @@ -46,7 +46,12 @@ #include "EbsdLib/Utilities/ComputeStereographicProjection.h" #include "EbsdLib/Utilities/EbsdStringUtils.hpp" #include "EbsdLib/Utilities/Fonts.hpp" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" +#include "EbsdLib/Utilities/GriddedColorKey.hpp" #include "EbsdLib/Utilities/ModifiedLambertProjection.h" +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/PUCMColorKey.hpp" +#include "EbsdLib/Utilities/TSLColorKey.hpp" #ifdef EbsdLib_USE_PARALLEL_ALGORITHMS #include @@ -55,10 +60,30 @@ #endif using namespace ebsdlib; +namespace +{ +ebsdlib::IColorKey::Pointer keyForKind(ebsdlib::ColorKeyKind kind) +{ + static const auto k_TSL = std::make_shared(); + static const auto k_PUCM = std::make_shared("23"); + static const auto k_NH = std::make_shared(ebsdlib::FundamentalSectorGeometry::cubicLow()); + switch(kind) + { + case ebsdlib::ColorKeyKind::PUCM: + return k_PUCM; + case ebsdlib::ColorKeyKind::NolzeHielscher: + return k_NH; + case ebsdlib::ColorKeyKind::TSL: + break; + } + return k_TSL; +} +} // namespace + namespace CubicLow { -constexpr std::array k_OdfNumBins = {36, 36, 36}; // Represents a 5Deg bin +constexpr std::array k_OdfNumBins = {36, 36, 36}; // Represents a 5Deg bin in homochoric space static const std::array k_OdfDimInitValue = {std::pow((0.75 * (ebsdlib::constants::k_PiOver2D - std::sin(ebsdlib::constants::k_PiOver2D))), (1.0 / 3.0)), std::pow((0.75 * (ebsdlib::constants::k_PiOver2D - std::sin(ebsdlib::constants::k_PiOver2D))), (1.0 / 3.0)), std::pow((0.75 * (ebsdlib::constants::k_PiOver2D - std::sin(ebsdlib::constants::k_PiOver2D))), (1.0 / 3.0))}; @@ -554,14 +579,12 @@ class GenerateSphereCoordsImpl void generate(size_t start, size_t end) const { - ebsdlib::Matrix3X3D gTranspose; ebsdlib::Matrix3X1D direction(0.0, 0.0, 0.0); for(size_t i = start; i < end; ++i) { - ebsdlib::Matrix3X3D g(EulerDType(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)).toOrientationMatrix().data()); - - gTranspose = g.transpose(); + EulerDType euler(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)); + ebsdlib::Matrix3X3D gTranspose = euler.toOrientationMatrix().toGMatrix().transpose(); // ----------------------------------------------------------------------------- // 001 Family @@ -611,7 +634,7 @@ class GenerateSphereCoordsImpl m_xyz011->getPointer(i * 36 + 15), // write to the next triplet in memory [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 direction[0] = -ebsdlib::constants::k_1OverRoot2D; - direction[1] = -ebsdlib::constants::k_1OverRoot2D; + direction[1] = ebsdlib::constants::k_1OverRoot2D; direction[2] = 0.0; (gTranspose * direction).copyInto(m_xyz011->getPointer(i * 36 + 18)); std::transform(m_xyz011->getPointer(i * 36 + 18), m_xyz011->getPointer(i * 36 + 21), @@ -675,7 +698,8 @@ class GenerateSphereCoordsImpl } // namespace CubicLow // ----------------------------------------------------------------------------- -void CubicLowOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111) const +void CubicLowOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111, + ebsdlib::HexConvention conv) const { size_t nOrientations = eulers->getNumberOfTuples(); @@ -744,17 +768,17 @@ bool CubicLowOps::inUnitTriangle(double eta, double chi) const } // ----------------------------------------------------------------------------- -ebsdlib::Rgb CubicLowOps::generateIPFColor(double* eulers, double* refDir, bool degToRad) const +ebsdlib::Rgb CubicLowOps::generateIPFColor(double* eulers, double* refDir, bool degToRad, ebsdlib::ColorKeyKind kind) const { - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- -ebsdlib::Rgb CubicLowOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad) const +ebsdlib::Rgb CubicLowOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad, ebsdlib::ColorKeyKind kind) const { double eulers[3] = {phi1, phi, phi2}; double refDir[3] = {refDir0, refDir1, refDir2}; - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- @@ -779,7 +803,7 @@ ebsdlib::Rgb CubicLowOps::generateRodriguesColor(double r1, double r2, double r3 } // ----------------------------------------------------------------------------- -std::array CubicLowOps::getDefaultPoleFigureNames() const +std::array CubicLowOps::getDefaultPoleFigureNames(ebsdlib::HexConvention conv) const { return {"<001>", "<011>", "<111>"}; } @@ -941,7 +965,7 @@ std::vector CubicLowOps::generatePoleFigure(Po namespace { -ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const CubicLowOps* ops, int imageDim, bool generateEntirePlane) +ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const CubicLowOps* ops, int imageDim, bool generateEntirePlane, const ebsdlib::IColorKey* key) { std::vector dims(1, 4); std::string arrayName = EbsdStringUtils::replace(ops->getSymmetryName(), "/", "_"); @@ -979,7 +1003,8 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const CubicLowOps* ops, int ima } else if((sphericalCoords[2] > sphericalCoords[0] && sphericalCoords[2] > sphericalCoords[1]) || generateEntirePlane) { - color = ops->generateIPFColor(0.0, 0.0, 0.0, sphericalCoords[0], sphericalCoords[1], sphericalCoords[2], false); + double zeros[3] = {0.0, 0.0, 0.0}; + color = ops->computeIPFColor(zeros, sphericalCoords.data(), false, key); } pixelPtr[idx] = color; } @@ -989,9 +1014,62 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const CubicLowOps* ops, int ima } // ----------------------------------------------------------------------------- -void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, std::vector margins, std::array figureOrigin, std::array figureCenter, - bool drawFullCircle) +} // namespace + +// ----------------------------------------------------------------------------- +bool CubicLowOps::mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const +{ + double xInc = 1.0 / static_cast(imageDim); + double yInc = 1.0 / static_cast(imageDim); + + double x = 0.5 * static_cast(xPixel) * xInc; + double y = 0.5 * static_cast(yPixel) * yInc; + + double sumSquares = (x * x) + (y * y); + if(sumSquares > 1.0) + { + return false; + } + + auto sc = stereographic::utils::StereoToSpherical(x, y).normalize(); + + if(!(sc[2] > sc[0] && sc[2] > sc[1])) + { + return false; + } + + sphereDir[0] = static_cast(sc[0]); + sphereDir[1] = static_cast(sc[1]); + sphereDir[2] = static_cast(sc[2]); + return true; +} + +// ----------------------------------------------------------------------------- +std::array CubicLowOps::adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const { + if(!generateEntirePlane) + { + figureOrigin[1] = fontPtSize * 2.0F; + } + return figureOrigin; +} + +// ----------------------------------------------------------------------------- +void CubicLowOps::drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, + std::array figureCenter, bool drawFullCircle, ebsdlib::HexConvention conv) const +{ + if(!drawFullCircle) + { + int legendHeight = canvasDim - static_cast(margins[0]) - static_cast(margins[2]); + int legendWidth = canvasDim - static_cast(margins[1]) - static_cast(margins[3]); + if(legendHeight > legendWidth) + { + legendHeight = legendWidth; + } + figureCenter = {figureOrigin[0], figureOrigin[1] + static_cast(legendHeight)}; + } + int legendHeight = canvasDim - static_cast(margins[0]) - static_cast(margins[2]); int legendWidth = canvasDim - static_cast(margins[1]) - static_cast(margins[3]); @@ -1119,21 +1197,14 @@ void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float } } -} // namespace - // ----------------------------------------------------------------------------- -ebsdlib::UInt8ArrayType::Pointer CubicLowOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane) const +ebsdlib::UInt8ArrayType::Pointer CubicLowOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane, ebsdlib::HexConvention conv, ebsdlib::ColorKeyKind kind, bool gridded) const { - // Figure out the Legend Pixel Size + // Compute legend dimensions (same formula as annotateIPFImage uses) const float fontPtSize = static_cast(canvasDim) / 24.0f; - const std::vector margins = {fontPtSize * 3, // Top - static_cast(canvasDim) / 7.0F, // Right - fontPtSize * 2, // Bottom - static_cast(canvasDim) / 7.0F}; // Left - + const std::vector margins = {fontPtSize * 3, static_cast(canvasDim / 7.0f), fontPtSize * 2, static_cast(canvasDim / 7.0f)}; int legendHeight = canvasDim - static_cast(margins[0]) - static_cast(margins[2]); int legendWidth = canvasDim - static_cast(margins[1]) - static_cast(margins[3]); - if(legendHeight > legendWidth) { legendHeight = legendWidth; @@ -1142,77 +1213,17 @@ ebsdlib::UInt8ArrayType::Pointer CubicLowOps::generateIPFTriangleLegend(int canv { legendWidth = legendHeight; } - int pageHeight = canvasDim; - int pageWidth = canvasDim; - int halfWidth = legendWidth / 2; - int halfHeight = legendHeight / 2; - std::array figureOrigin = {margins[3], margins[0] * 1.33F}; - if(!generateEntirePlane) - { - // figureOrigin[0] = margins[3] * 2.0F; - figureOrigin[1] = 0.0F + fontPtSize * 2.0F; - } - std::array figureCenter = {figureOrigin[0] + static_cast(halfWidth), figureOrigin[1] + static_cast(halfHeight)}; - - // Create the actual Legend which will come back as ARGB values - ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane); - - // Convert from ARGB to RGBA which is what canvas_itk wants - image = ebsdlib::ConvertColorOrder(image.get(), legendHeight); - - // We need to mirror across the X Axis because the image was drawn with +Y pointing down - image = ebsdlib::MirrorImage(image.get(), legendHeight); - - // Create a 2D Canvas to draw into now that the Legend is in the proper form - canvas_ity::canvas context(pageWidth, pageHeight); - - std::vector latoBold = ebsdlib::fonts::GetLatoBold(); - std::vector latoRegular = ebsdlib::fonts::GetLatoRegular(); - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize); - context.set_color(canvas_ity::fill_style, 0.0f, 0.0f, 0.0f, 1.0f); - canvas_ity::baseline_style const baselines[] = {canvas_ity::alphabetic, canvas_ity::top, canvas_ity::middle, canvas_ity::bottom, canvas_ity::hanging, canvas_ity::ideographic}; - context.text_baseline = baselines[0]; - - // Fill the whole background with white - context.move_to(0.0f, 0.0f); - context.line_to(static_cast(pageWidth), 0.0f); - context.line_to(static_cast(pageWidth), static_cast(pageHeight)); - context.line_to(0.0f, static_cast(pageHeight)); - context.line_to(0.0f, 0.0f); - context.close_path(); - context.set_color(canvas_ity::fill_style, 1.0f, 1.0f, 1.0f, 1.0f); - context.fill(); - - // Draw the legend image onto the canvas at the correct spot. - context.draw_image(image->getPointer(0), legendWidth, legendHeight, legendWidth * image->getNumberOfComponents(), figureOrigin[0], figureOrigin[1], static_cast(legendWidth), - static_cast(legendHeight)); - - // Draw Title of Legend - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize * 1.5F); - ebsdlib::WriteText(context, getSymmetryName(), {margins[0], static_cast(fontPtSize * 1.5)}, fontPtSize * 1.5F); - - if(generateEntirePlane) + // Generate the colored SST triangle image (ARGB) + ebsdlib::IColorKey::Pointer key = keyForKind(kind); + if(gridded) { - context.set_font(latoRegular.data(), static_cast(latoRegular.size()), fontPtSize); - DrawFullCircleAnnotations(context, canvasDim, fontPtSize, margins, figureOrigin, figureCenter, true); + key = std::make_shared(key, 1.0); } - else - { - figureCenter = {figureOrigin[0], figureOrigin[1] + static_cast(legendHeight)}; - context.set_font(latoRegular.data(), static_cast(latoRegular.size()), fontPtSize); - DrawFullCircleAnnotations(context, canvasDim, fontPtSize, margins, figureOrigin, figureCenter, false); - } - - // Fetch the rendered RGBA pixels from the entire canvas. - ebsdlib::UInt8ArrayType::Pointer rgbaCanvasImage = ebsdlib::UInt8ArrayType::CreateArray(pageHeight * pageWidth, {4ULL}, "Triangle Legend", true); - // std::vector rgbaCanvasImage(static_cast(pageHeight * pageWidth * 4)); - context.get_image_data(rgbaCanvasImage->getPointer(0), pageWidth, pageHeight, pageWidth * 4, 0, 0); - - // Remove the Alpha channel from the final image - rgbaCanvasImage = ebsdlib::RemoveAlphaChannel(rgbaCanvasImage.get()); + ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane, key.get()); - return rgbaCanvasImage; + // Annotate with title and Miller index labels + return annotateIPFImage(image, legendHeight, canvasDim, getSymmetryName(), generateEntirePlane, /*hasColorBar=*/false, ebsdlib::HexConvention::NotApplicable); } // ----------------------------------------------------------------------------- diff --git a/Source/EbsdLib/LaueOps/CubicLowOps.h b/Source/EbsdLib/LaueOps/CubicLowOps.h index d87deea4..c81736c8 100644 --- a/Source/EbsdLib/LaueOps/CubicLowOps.h +++ b/Source/EbsdLib/LaueOps/CubicLowOps.h @@ -199,7 +199,8 @@ class EbsdLib_EXPORT CubicLowOps : public LaueOps double getF1spt(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; double getF7(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; - void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111) const override; + void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111, + ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; /** * @brief * @param eta Optional input value only needed for the "Cubic" Laue classes @@ -213,7 +214,7 @@ class EbsdLib_EXPORT CubicLowOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateIPFColor Generates an ARGB Color from a Euler Angle and Reference Direction @@ -226,7 +227,7 @@ class EbsdLib_EXPORT CubicLowOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double phi1, double phi, double phi2, double dir0, double dir1, double dir2, bool degToRad) const override; + ebsdlib::Rgb generateIPFColor(double phi1, double phi, double phi2, double dir0, double dir1, double dir2, bool degToRad, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateRodriguesColor Generates an RGB Color from a Rodrigues Vector @@ -252,13 +253,22 @@ class EbsdLib_EXPORT CubicLowOps : public LaueOps * @brief Returns the names for each of the three standard pole figures that are generated. For example *<001>, <011> and <111> for a cubic system */ - std::array getDefaultPoleFigureNames() const override; + std::array getDefaultPoleFigureNames(ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; /** * @brief generateStandardTriangle Generates an RGBA array that is a color "Standard" IPF Triangle Legend used for IPF Color Maps. * @return */ - ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane) const override; + ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane, ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable, + ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL, bool gridded = false) const override; + + bool mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const override; + + void drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, std::array figureCenter, + bool drawFullCircle, ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; + + std::array adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const override; /** * @brief Returns if the given Quaternion is within the Rodrigues Fundamental Zone (RFZ) diff --git a/Source/EbsdLib/LaueOps/CubicOps.cpp b/Source/EbsdLib/LaueOps/CubicOps.cpp index ad6bff17..40cf242b 100644 --- a/Source/EbsdLib/LaueOps/CubicOps.cpp +++ b/Source/EbsdLib/LaueOps/CubicOps.cpp @@ -49,6 +49,11 @@ #include "EbsdLib/Utilities/ComputeStereographicProjection.h" #include "EbsdLib/Utilities/EbsdStringUtils.hpp" #include "EbsdLib/Utilities/Fonts.hpp" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" +#include "EbsdLib/Utilities/GriddedColorKey.hpp" +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/PUCMColorKey.hpp" +#include "EbsdLib/Utilities/TSLColorKey.hpp" #ifdef EbsdLib_USE_PARALLEL_ALGORITHMS #include @@ -57,10 +62,33 @@ #endif using namespace ebsdlib; +namespace +{ +// Per-class color-key singletons. Each LaueOps subclass uses its own point group +// for PUCM and its own FundamentalSectorGeometry for Nolze-Hielscher; CubicOps +// is 432 / cubicHigh. +ebsdlib::IColorKey::Pointer keyForKind(ebsdlib::ColorKeyKind kind) +{ + static const auto k_TSL = std::make_shared(); + static const auto k_PUCM = std::make_shared("432"); + static const auto k_NH = std::make_shared(ebsdlib::FundamentalSectorGeometry::cubicHigh()); + switch(kind) + { + case ebsdlib::ColorKeyKind::PUCM: + return k_PUCM; + case ebsdlib::ColorKeyKind::NolzeHielscher: + return k_NH; + case ebsdlib::ColorKeyKind::TSL: + break; + } + return k_TSL; +} +} // namespace + namespace CubicHigh { -constexpr std::array k_OdfNumBins = {18, 18, 18}; // Represents a 5Deg bin +constexpr std::array k_OdfNumBins = {18, 18, 18}; // Represents a 5Deg bin in homochoric space static const std::array k_OdfDimInitValue = {std::pow((0.75 * (ebsdlib::constants::k_PiOver4D - std::sin(ebsdlib::constants::k_PiOver4D))), (1.0 / 3.0)), std::pow((0.75 * (ebsdlib::constants::k_PiOver4D - std::sin(ebsdlib::constants::k_PiOver4D))), (1.0 / 3.0)), std::pow((0.75 * (ebsdlib::constants::k_PiOver4D - std::sin(ebsdlib::constants::k_PiOver4D))), (1.0 / 3.0))}; @@ -1337,14 +1365,13 @@ class GenerateSphereCoordsImpl void generate(size_t start, size_t end) const { - Matrix3X3D gTranspose; Matrix3X1D direction(0.0, 0.0, 0.0); for(size_t i = start; i < end; ++i) { - Matrix3X3D g(EulerDType(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)).toOrientationMatrix().data()); - gTranspose = g.transpose(); + EulerDType euler(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)); + ebsdlib::Matrix3X3D gTranspose = euler.toOrientationMatrix().toGMatrix().transpose(); // ----------------------------------------------------------------------------- // 001 Family @@ -1458,7 +1485,8 @@ class GenerateSphereCoordsImpl } // namespace CubicHigh // ----------------------------------------------------------------------------- -void CubicOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111) const +void CubicOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111, + ebsdlib::HexConvention conv) const { size_t nOrientations = eulers->getNumberOfTuples(); @@ -1665,17 +1693,17 @@ bool CubicOps::inUnitTriangle(double eta, double chi) const } // ----------------------------------------------------------------------------- -ebsdlib::Rgb CubicOps::generateIPFColor(double* eulers, double* refDir, bool degToRad) const +ebsdlib::Rgb CubicOps::generateIPFColor(double* eulers, double* refDir, bool degToRad, ebsdlib::ColorKeyKind kind) const { - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- -ebsdlib::Rgb CubicOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad) const +ebsdlib::Rgb CubicOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad, ebsdlib::ColorKeyKind kind) const { double eulers[3] = {phi1, phi, phi2}; double refDir[3] = {refDir0, refDir1, refDir2}; - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- @@ -1695,7 +1723,7 @@ ebsdlib::Rgb CubicOps::generateRodriguesColor(double r1, double r2, double r3) c } // ----------------------------------------------------------------------------- -std::array CubicOps::getDefaultPoleFigureNames() const +std::array CubicOps::getDefaultPoleFigureNames(ebsdlib::HexConvention conv) const { return {"<001>", "<011>", "<111>"}; } @@ -1703,7 +1731,7 @@ std::array CubicOps::getDefaultPoleFigureNames() const // ----------------------------------------------------------------------------- std::vector CubicOps::generatePoleFigure(PoleFigureConfiguration_t& config) const { - std::array labels = getDefaultPoleFigureNames(); + std::array labels = getDefaultPoleFigureNames(ebsdlib::HexConvention::NotApplicable); std::string label0 = labels[0]; std::string label1 = labels[1]; std::string label2 = labels[2]; @@ -1869,7 +1897,7 @@ std::vector CubicOps::generatePoleFigure(PoleF namespace { -ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const CubicOps* ops, int imageDim, bool generateEntirePlane) +ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const CubicOps* ops, int imageDim, bool generateEntirePlane, const ebsdlib::IColorKey* key) { std::vector dims(1, 4); std::string arrayName = EbsdStringUtils::replace(ops->getSymmetryName(), "/", "_"); @@ -1942,7 +1970,7 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const CubicOps* ops, int imageD // Sort the cd array from smallest to largest sphericalCoords = TripletSort(sphericalCoords); - color = ops->generateIPFColor(orientation.data(), sphericalCoords.data(), false); + color = ops->computeIPFColor(orientation.data(), sphericalCoords.data(), false, key); } pixelPtr[idx] = color; } @@ -1952,9 +1980,73 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const CubicOps* ops, int imageD } // ----------------------------------------------------------------------------- -void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, std::vector margins, std::array figureOrigin, std::array figureCenter, - bool drawFullCircle) +} // namespace + +// ----------------------------------------------------------------------------- +bool CubicOps::mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const { + double indexConst1 = 0.414 / static_cast(imageDim); + double indexConst2 = 0.207 / static_cast(imageDim); + + double x = xPixel * indexConst1 + indexConst2; + double y = yPixel * indexConst1 + indexConst2; + + double sumSquares = (x * x) + (y * y); + if(sumSquares > 1.0) + { + return false; + } + if(y < 0.0 || x < 0.0) + { + return false; + } + + auto sc = stereographic::utils::StereoToSpherical(x, y).normalize(); + + double k_RootOfHalf = std::sqrt(0.5); + double red1 = sc[0] * (-k_RootOfHalf) + sc[2] * k_RootOfHalf; + double phi = std::acos(red1); + double x1alt = sc[0] / k_RootOfHalf; + x1alt = x1alt / std::sqrt((x1alt * x1alt) + (sc[1] * sc[1])); + double theta = std::acos(x1alt); + + if(phi <= (45.0 * ebsdlib::constants::k_PiOver180D) || phi >= (90.0 * ebsdlib::constants::k_PiOver180D) || theta >= (35.26 * ebsdlib::constants::k_PiOver180D)) + { + return false; + } + + sphereDir[0] = static_cast(sc[0]); + sphereDir[1] = static_cast(sc[1]); + sphereDir[2] = static_cast(sc[2]); + return true; +} + +// ----------------------------------------------------------------------------- +std::array CubicOps::adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const +{ + if(!generateEntirePlane) + { + figureOrigin[1] = fontPtSize * 2.0F; + } + return figureOrigin; +} + +// ----------------------------------------------------------------------------- +void CubicOps::drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, std::array figureCenter, + bool drawFullCircle, ebsdlib::HexConvention conv) const +{ + if(!drawFullCircle) + { + int legendHeight = canvasDim - static_cast(margins[0]) - static_cast(margins[2]); + int legendWidth = canvasDim - static_cast(margins[1]) - static_cast(margins[3]); + if(legendHeight > legendWidth) + { + legendHeight = legendWidth; + } + figureCenter = {figureOrigin[0], figureOrigin[1] + static_cast(legendHeight)}; + } + int legendHeight = canvasDim - margins[0] - margins[2]; int legendWidth = canvasDim - margins[1] - margins[3]; @@ -2071,21 +2163,14 @@ void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float } } -} // namespace - // ----------------------------------------------------------------------------- -ebsdlib::UInt8ArrayType::Pointer CubicOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane) const +ebsdlib::UInt8ArrayType::Pointer CubicOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane, ebsdlib::HexConvention conv, ebsdlib::ColorKeyKind kind, bool gridded) const { - // Figure out the Legend Pixel Size + // Compute legend dimensions (same formula as annotateIPFImage uses) const float fontPtSize = static_cast(canvasDim) / 24.0f; - const std::vector margins = {fontPtSize * 3, // Top - static_cast(canvasDim / 7.0f), // Right - fontPtSize * 2, // Bottom - static_cast(canvasDim / 7.0f)}; // Left - + const std::vector margins = {fontPtSize * 3, static_cast(canvasDim / 7.0f), fontPtSize * 2, static_cast(canvasDim / 7.0f)}; int legendHeight = canvasDim - static_cast(margins[0]) - static_cast(margins[2]); int legendWidth = canvasDim - static_cast(margins[1]) - static_cast(margins[3]); - if(legendHeight > legendWidth) { legendHeight = legendWidth; @@ -2094,77 +2179,18 @@ ebsdlib::UInt8ArrayType::Pointer CubicOps::generateIPFTriangleLegend(int canvasD { legendWidth = legendHeight; } - int pageHeight = canvasDim; - int pageWidth = canvasDim; - int halfWidth = legendWidth / 2; - int halfHeight = legendHeight / 2; - - std::array figureOrigin = {margins[3], margins[0] * 1.33F}; - if(!generateEntirePlane) - { - // figureOrigin[0] = margins[3] * 2.0F; - figureOrigin[1] = 0.0F + fontPtSize * 2.0F; - } - std::array figureCenter = {figureOrigin[0] + halfWidth, figureOrigin[1] + halfHeight}; - - // Create the actual Legend which will come back as ARGB values - ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane); - - // Convert from ARGB to RGBA which is what canvas_itk wants - image = ebsdlib::ConvertColorOrder(image.get(), legendHeight); - - // We need to mirror across the X Axis because the image was drawn with +Y pointing down - image = ebsdlib::MirrorImage(image.get(), legendHeight); - - // Create a 2D Canvas to draw into now that the Legend is in the proper form - canvas_ity::canvas context(pageWidth, pageHeight); - - std::vector latoBold = ebsdlib::fonts::GetLatoBold(); - std::vector latoRegular = ebsdlib::fonts::GetLatoRegular(); - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize); - context.set_color(canvas_ity::fill_style, 0.0f, 0.0f, 0.0f, 1.0f); - canvas_ity::baseline_style const baselines[] = {canvas_ity::alphabetic, canvas_ity::top, canvas_ity::middle, canvas_ity::bottom, canvas_ity::hanging, canvas_ity::ideographic}; - context.text_baseline = baselines[0]; - // Fill the whole background with white - context.move_to(0.0f, 0.0f); - context.line_to(static_cast(pageWidth), 0.0f); - context.line_to(static_cast(pageWidth), static_cast(pageHeight)); - context.line_to(0.0f, static_cast(pageHeight)); - context.line_to(0.0f, 0.0f); - context.close_path(); - context.set_color(canvas_ity::fill_style, 1.0f, 1.0f, 1.0f, 1.0f); - context.fill(); - - // Draw the legend image onto the canvas at the correct spot. - context.draw_image(image->getPointer(0), legendWidth, legendHeight, legendWidth * image->getNumberOfComponents(), figureOrigin[0], figureOrigin[1], static_cast(legendWidth), - static_cast(legendHeight)); - - // Draw Title of Legend - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize * 1.5); - ebsdlib::WriteText(context, getSymmetryName(), {margins[0], static_cast(fontPtSize * 1.5)}, fontPtSize * 1.5); - - if(generateEntirePlane) + ebsdlib::IColorKey::Pointer key = keyForKind(kind); + if(gridded) { - context.set_font(latoRegular.data(), static_cast(latoRegular.size()), fontPtSize); - DrawFullCircleAnnotations(context, canvasDim, fontPtSize, margins, figureOrigin, figureCenter, true); + key = std::make_shared(key, 1.0); } - else - { - figureCenter = {figureOrigin[0], figureOrigin[1] + legendHeight}; - context.set_font(latoRegular.data(), static_cast(latoRegular.size()), fontPtSize); - DrawFullCircleAnnotations(context, canvasDim, fontPtSize, margins, figureOrigin, figureCenter, false); - } - - // Fetch the rendered RGBA pixels from the entire canvas. - ebsdlib::UInt8ArrayType::Pointer rgbaCanvasImage = ebsdlib::UInt8ArrayType::CreateArray(pageHeight * pageWidth, {4ULL}, "Triangle Legend", true); - // std::vector rgbaCanvasImage(static_cast(pageHeight * pageWidth * 4)); - context.get_image_data(rgbaCanvasImage->getPointer(0), pageWidth, pageHeight, pageWidth * 4, 0, 0); - // Remove the Alpha channel from the final image - rgbaCanvasImage = ebsdlib::RemoveAlphaChannel(rgbaCanvasImage.get()); + // Generate the colored SST triangle image (ARGB) + ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane, key.get()); - return rgbaCanvasImage; + // Annotate with title and Miller index labels + return annotateIPFImage(image, legendHeight, canvasDim, getSymmetryName(), generateEntirePlane, /*hasColorBar=*/false, ebsdlib::HexConvention::NotApplicable); } std::vector> CubicOps::rodri2pair(std::vector x, std::vector y, std::vector z) diff --git a/Source/EbsdLib/LaueOps/CubicOps.h b/Source/EbsdLib/LaueOps/CubicOps.h index 742bdbfb..c5e84c81 100644 --- a/Source/EbsdLib/LaueOps/CubicOps.h +++ b/Source/EbsdLib/LaueOps/CubicOps.h @@ -245,66 +245,35 @@ class EbsdLib_EXPORT CubicOps : public LaueOps */ double getF7(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; - void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111) const override; + void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111, + ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; /** * @brief * @param eta Optional input value only needed for the "Cubic" Laue classes * @return Triplet of etaMin, etaMax, chiMax */ std::array getIpfColorAngleLimits(double eta) const override; - /** - * @brief generateIPFColor Generates an ARGB Color from a Euler Angle and Reference Direction - * @param eulers Pointer to the 3 component Euler Angle - * @param refDir Pointer to the 3 Component Reference Direction - * @param convertDegrees Are the input angles in Degrees - * @return Returns the ARGB Quadruplet ebsdlib::Rgb - */ - ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees) const override; - /** - * @brief generateIPFColor Generates an ARGB Color from a Euler Angle and Reference Direction - * @param e0 First component of the Euler Angle - * @param e1 Second component of the Euler Angle - * @param e2 Third component of the Euler Angle - * @param dir0 First component of the Reference Direction - * @param dir1 Second component of the Reference Direction - * @param dir2 Third component of the Reference Direction - * @param convertDegrees Are the input angles in Degrees - * @return Returns the ARGB Quadruplet ebsdlib::Rgb - */ - ebsdlib::Rgb generateIPFColor(double phi1, double phi, double phi2, double dir0, double dir1, double dir2, bool degToRad) const override; + ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; + + ebsdlib::Rgb generateIPFColor(double phi1, double phi, double phi2, double dir0, double dir1, double dir2, bool degToRad, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; - /** - * @brief generateRodriguesColor Generates an RGB Color from a Rodrigues Vector - * @param r1 First component of the Rodrigues Vector - * @param r2 Second component of the Rodrigues Vector - * @param r3 Third component of the Rodrigues Vector - * @return Returns the ARGB Quadruplet ebsdlib::Rgb - */ ebsdlib::Rgb generateRodriguesColor(double r1, double r2, double r3) const override; - /** - * @brief generatePoleFigure This method will generate a number of pole figures for this crystal symmetry and the Euler - * angles that are passed in. - * @param eulers The Euler Angles to generate the pole figure from. - * @param imageSize The size in Pixels of the final RGB Image. - * @param numColors The number of colors to use in the RGB Image. Less colors can give the effect of contouring. - * @return A std::vector of ebsdlib::UInt8ArrayType pointers where each one represents a 2D RGB array that can be used to initialize - * an image object from other libraries and written out to disk. - */ std::vector generatePoleFigure(PoleFigureConfiguration_t& config) const override; - /** - * @brief Returns the names for each of the three standard pole figures that are generated. For example - *<001>, <011> and <111> for a cubic system - */ - std::array getDefaultPoleFigureNames() const override; + std::array getDefaultPoleFigureNames(ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; - /** - * @brief generateStandardTriangle Generates an RGBA array that is a color "Standard" IPF Triangle Legend used for IPF Color Maps. - * @return - */ - ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane) const override; + ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane, ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable, + ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL, bool gridded = false) const override; + + bool mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const override; + + void drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, std::array figureCenter, + bool drawFullCircle, ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; + + std::array adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const override; /** * @brief Returns if the given Quaternion is within the Rodrigues Fundamental Zone (RFZ) diff --git a/Source/EbsdLib/LaueOps/HexagonalLowOps.cpp b/Source/EbsdLib/LaueOps/HexagonalLowOps.cpp index 21c716ae..096ada38 100644 --- a/Source/EbsdLib/LaueOps/HexagonalLowOps.cpp +++ b/Source/EbsdLib/LaueOps/HexagonalLowOps.cpp @@ -46,7 +46,12 @@ #include "EbsdLib/Utilities/ComputeStereographicProjection.h" #include "EbsdLib/Utilities/EbsdStringUtils.hpp" #include "EbsdLib/Utilities/Fonts.hpp" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" +#include "EbsdLib/Utilities/GriddedColorKey.hpp" +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/PUCMColorKey.hpp" #include "EbsdLib/Utilities/PoleFigureUtilities.h" +#include "EbsdLib/Utilities/TSLColorKey.hpp" #ifdef EbsdLib_USE_PARALLEL_ALGORITHMS #include @@ -55,9 +60,29 @@ #endif using namespace ebsdlib; +namespace +{ +ebsdlib::IColorKey::Pointer keyForKind(ebsdlib::ColorKeyKind kind) +{ + static const auto k_TSL = std::make_shared(); + static const auto k_PUCM = std::make_shared("6"); + static const auto k_NH = std::make_shared(ebsdlib::FundamentalSectorGeometry::hexagonalLow()); + switch(kind) + { + case ebsdlib::ColorKeyKind::PUCM: + return k_PUCM; + case ebsdlib::ColorKeyKind::NolzeHielscher: + return k_NH; + case ebsdlib::ColorKeyKind::TSL: + break; + } + return k_TSL; +} +} // namespace + namespace HexagonalLow { -constexpr std::array k_OdfNumBins = {72, 72, 12}; // Represents a 5Deg bin +constexpr std::array k_OdfNumBins = {72, 72, 12}; // Represents a 5Deg bin in homochoric space static const std::array k_OdfDimInitValue = {std::pow((0.75 * (ebsdlib::constants::k_PiD - std::sin(ebsdlib::constants::k_PiD))), (1.0 / 3.0)), std::pow((0.75 * (ebsdlib::constants::k_PiD - std::sin(ebsdlib::constants::k_PiD))), (1.0 / 3.0)), std::pow((0.75 * ((ebsdlib::constants::k_PiD / 6.0) - std::sin(ebsdlib::constants::k_PiD / 6.0))), (1.0 / 3.0))}; @@ -66,8 +91,8 @@ static const std::array k_OdfDimStepValue = {k_OdfDimInitValue[0] / s k_OdfDimInitValue[2] / static_cast(k_OdfNumBins[2] / 2)}; constexpr int k_SymSize0 = 2; -constexpr int k_SymSize1 = 2; -constexpr int k_SymSize2 = 2; +constexpr int k_SymSize1 = 6; +constexpr int k_SymSize2 = 6; constexpr size_t k_OdfSize = 62208; constexpr size_t k_MdfSize = 62208; @@ -129,6 +154,90 @@ static const std::vector k_MatSym = { constexpr double k_EtaMin = 0.0; constexpr double k_EtaMax = 60.0; constexpr double k_ChiMax = 90.0; + +// --------------------------------------------------------------------------- +// SymOps: convention-aware bundle of symmetry operations + plane-family +// direction tables. Mirrors the pattern in HexagonalOps. +// +// CANONICAL = X||a* (the v3 hand-typed values above are the MTEX-validated +// source of truth). X||a is derived via 30°-about-c similarity transform. +// +// For HexagonalLow (Laue class 6/m), the canonical k_QuatSym contains only +// c-axis rotations (no basal-plane 180° flips), so the X||a derivation via +// 30°-about-c similarity transform is mathematically a no-op for the sym +// ops. The direction tables ARE convention-dependent because their basal- +// plane cartesian values change with the basis. +// +// Note on sym op ordering: the order of entries in k_QuatSym originates +// from the EMsoftOO project, hand-derived for loop efficiency. There is +// no expected mathematical relationship between consecutive entries. +// +// See Code_Review/v3_phase0_design_notes.md §5 for the design pattern and +// §16 for the canonical-direction reasoning. +// --------------------------------------------------------------------------- +struct SymOps +{ + std::vector quat; + std::vector rod; + std::vector mat; + + std::vector dirsFamily0; // {0001} c-axis + std::vector dirsFamily1; // {10-10} plane normals + std::vector dirsFamily2; // {11-20} plane normals (offset 30° from {10-10}) + + template + static SymOps build() + { + const std::vector canonicalDirsFamily0 = {{0.0, 0.0, 1.0}}; + const std::vector canonicalDirsFamily1 = {{1.0, 0.0, 0.0}, {0.5, ebsdlib::constants::k_Root3Over2D, 0.0}, {-0.5, ebsdlib::constants::k_Root3Over2D, 0.0}}; + const std::vector canonicalDirsFamily2 = {{ebsdlib::constants::k_Root3Over2D, 0.5, 0.0}, {0.0, 1.0, 0.0}, {-ebsdlib::constants::k_Root3Over2D, 0.5, 0.0}}; + + if constexpr(Conv == ebsdlib::HexConvention::XParallelAStar) + { + return SymOps{k_QuatSym, k_RodSym, k_MatSym, canonicalDirsFamily0, canonicalDirsFamily1, canonicalDirsFamily2}; + } + else // XParallelA -- derive by 30°-about-c similarity transform. + { + const double sin15 = std::sin(15.0 * ebsdlib::constants::k_PiOver180D); + const double cos15 = std::cos(15.0 * ebsdlib::constants::k_PiOver180D); + const QuatD q30(0.0, 0.0, sin15, cos15); + const QuatD q30Inv = q30.conjugate(); + + const double c30 = ebsdlib::constants::k_Root3Over2D; + const double s30 = 0.5; + const ebsdlib::Matrix3X3D rz30(c30, -s30, 0.0, s30, c30, 0.0, 0.0, 0.0, 1.0); + + SymOps out; + out.quat.reserve(k_QuatSym.size()); + out.rod.reserve(k_QuatSym.size()); + out.mat.reserve(k_QuatSym.size()); + for(const auto& qStar : k_QuatSym) + { + const QuatD qA = q30 * qStar * q30Inv; + out.quat.push_back(qA); + out.mat.push_back(qA.toOrientationMatrix().toGMatrix()); + out.rod.push_back(qA.toRodrigues()); + } + + out.dirsFamily0 = canonicalDirsFamily0; // c-axis: invariant + out.dirsFamily1.reserve(canonicalDirsFamily1.size()); + out.dirsFamily2.reserve(canonicalDirsFamily2.size()); + for(const auto& d : canonicalDirsFamily1) + { + out.dirsFamily1.push_back(rz30 * d); + } + for(const auto& d : canonicalDirsFamily2) + { + out.dirsFamily2.push_back(rz30 * d); + } + return out; + } + } +}; + +static const SymOps k_SymOps_XParallelAStar = SymOps::build(); +static const SymOps k_SymOps_XParallelA = SymOps::build(); + } // namespace HexagonalLow // ----------------------------------------------------------------------------- @@ -1044,57 +1153,53 @@ class GenerateSphereCoordsImpl ebsdlib::FloatArrayType* m_xyz001; ebsdlib::FloatArrayType* m_xyz011; ebsdlib::FloatArrayType* m_xyz111; + const SymOps* m_Sym; public: - GenerateSphereCoordsImpl(ebsdlib::FloatArrayType* eulerAngles, ebsdlib::FloatArrayType* xyz001Coords, ebsdlib::FloatArrayType* xyz011Coords, ebsdlib::FloatArrayType* xyz111Coords) + GenerateSphereCoordsImpl(ebsdlib::FloatArrayType* eulerAngles, ebsdlib::FloatArrayType* xyz001Coords, ebsdlib::FloatArrayType* xyz011Coords, ebsdlib::FloatArrayType* xyz111Coords, const SymOps* sym) : m_Eulers(eulerAngles) , m_xyz001(xyz001Coords) , m_xyz011(xyz011Coords) , m_xyz111(xyz111Coords) + , m_Sym(sym) { } virtual ~GenerateSphereCoordsImpl() = default; + static inline void emitDirAndAntipode(const ebsdlib::Matrix3X3D& gTranspose, const ebsdlib::Matrix3X1D& dir, ebsdlib::FloatArrayType* dest, size_t pairOffsetTuples) + { + const size_t plus = pairOffsetTuples * 3; + const size_t minus = plus + 3; + (gTranspose * dir).copyInto(dest->getPointer(plus)); + std::transform(dest->getPointer(plus), dest->getPointer(plus + 3), dest->getPointer(minus), [](float v) { return v * -1.0F; }); + } + void generate(size_t start, size_t end) const { - ebsdlib::Matrix3X3D gTranspose; - ebsdlib::Matrix3X1D direction(0.0, 0.0, 0.0); + const size_t f0Stride = m_Sym->dirsFamily0.size() * 2; + const size_t f1Stride = m_Sym->dirsFamily1.size() * 2; + const size_t f2Stride = m_Sym->dirsFamily2.size() * 2; for(size_t i = start; i < end; ++i) { - ebsdlib::Matrix3X3D g(EulerDType(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)).toOrientationMatrix().data()); - - gTranspose = g.transpose(); - - // ----------------------------------------------------------------------------- - // 001 Family - direction[0] = 0.0; - direction[1] = 0.0; - direction[2] = 1.0; - (gTranspose * direction).copyInto(m_xyz001->getPointer(i * 6)); - std::transform(m_xyz001->getPointer(i * 6), m_xyz001->getPointer(i * 6 + 3), - m_xyz001->getPointer(i * 6 + 3), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 - - // ----------------------------------------------------------------------------- - // [10-10], also [210] - direction[0] = -0.5; - direction[1] = ebsdlib::constants::k_Root3Over2D; - direction[2] = 0.0; - (gTranspose * direction).copyInto(m_xyz011->getPointer(i * 6)); - std::transform(m_xyz011->getPointer(i * 6), m_xyz011->getPointer(i * 6 + 3), - m_xyz011->getPointer(i * 6 + 3), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 - - // ----------------------------------------------------------------------------- - // [2-1-10] also [100] - direction[0] = 1; - direction[1] = 0; - direction[2] = 0; - (gTranspose * direction).copyInto(m_xyz111->getPointer(i * 6)); - std::transform(m_xyz111->getPointer(i * 6), m_xyz111->getPointer(i * 6 + 3), - m_xyz111->getPointer(i * 6 + 3), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 + EulerDType euler(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)); + ebsdlib::Matrix3X3D gTranspose = euler.toOrientationMatrix().toGMatrix().transpose(); + + // {0001} c-axis family (1 unique direction). + for(size_t k = 0; k < m_Sym->dirsFamily0.size(); ++k) + { + emitDirAndAntipode(gTranspose, m_Sym->dirsFamily0[k], m_xyz001, i * f0Stride + k * 2); + } + // {10-10} plane-normal family (3 unique under 6-fold). + for(size_t k = 0; k < m_Sym->dirsFamily1.size(); ++k) + { + emitDirAndAntipode(gTranspose, m_Sym->dirsFamily1[k], m_xyz011, i * f1Stride + k * 2); + } + // {11-20} plane-normal family (3 unique, offset 30° from {10-10}). + for(size_t k = 0; k < m_Sym->dirsFamily2.size(); ++k) + { + emitDirAndAntipode(gTranspose, m_Sym->dirsFamily2[k], m_xyz111, i * f2Stride + k * 2); + } } } @@ -1123,7 +1228,8 @@ std::vector GenerateSphereCoordsUsingReferenceDirection(eb } // ----------------------------------------------------------------------------- -void HexagonalLowOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz0001, ebsdlib::FloatArrayType* xyz1010, ebsdlib::FloatArrayType* xyz1120) const +void HexagonalLowOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz0001, ebsdlib::FloatArrayType* xyz1010, ebsdlib::FloatArrayType* xyz1120, + ebsdlib::HexConvention conv) const { size_t nOrientations = eulers->getNumberOfTuples(); @@ -1141,16 +1247,19 @@ void HexagonalLowOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eu xyz1120->resizeTuples(nOrientations * HexagonalLow::k_SymSize2 * 3); } + // Pick the convention-appropriate SymOps once. + const HexagonalLow::SymOps* sym = (conv == ebsdlib::HexConvention::XParallelAStar) ? &HexagonalLow::k_SymOps_XParallelAStar : &HexagonalLow::k_SymOps_XParallelA; + #ifdef EbsdLib_USE_PARALLEL_ALGORITHMS bool doParallel = true; if(doParallel) { - tbb::parallel_for(tbb::blocked_range(0, nOrientations), HexagonalLow::GenerateSphereCoordsImpl(eulers, xyz0001, xyz1010, xyz1120), tbb::auto_partitioner()); + tbb::parallel_for(tbb::blocked_range(0, nOrientations), HexagonalLow::GenerateSphereCoordsImpl(eulers, xyz0001, xyz1010, xyz1120, sym), tbb::auto_partitioner()); } else #endif { - HexagonalLow::GenerateSphereCoordsImpl serial(eulers, xyz0001, xyz1010, xyz1120); + HexagonalLow::GenerateSphereCoordsImpl serial(eulers, xyz0001, xyz1010, xyz1120, sym); serial.generate(0, nOrientations); } } @@ -1169,17 +1278,17 @@ bool HexagonalLowOps::inUnitTriangle(double eta, double chi) const } // ----------------------------------------------------------------------------- -ebsdlib::Rgb HexagonalLowOps::generateIPFColor(double* eulers, double* refDir, bool degToRad) const +ebsdlib::Rgb HexagonalLowOps::generateIPFColor(double* eulers, double* refDir, bool degToRad, ebsdlib::ColorKeyKind kind) const { - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- -ebsdlib::Rgb HexagonalLowOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad) const +ebsdlib::Rgb HexagonalLowOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad, ebsdlib::ColorKeyKind kind) const { double eulers[3] = {phi1, phi, phi2}; double refDir[3] = {refDir0, refDir1, refDir2}; - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- @@ -1204,15 +1313,20 @@ ebsdlib::Rgb HexagonalLowOps::generateRodriguesColor(double r1, double r2, doubl } // ----------------------------------------------------------------------------- -std::array HexagonalLowOps::getDefaultPoleFigureNames() const +std::array HexagonalLowOps::getDefaultPoleFigureNames(ebsdlib::HexConvention conv) const { - return {"<0001>", "<11-20>", "<2-1-10>"}; + // See HexagonalOps::getDefaultPoleFigureNames for the OIM/MTEX label rationale. + if(conv == ebsdlib::HexConvention::XParallelA) + { + return {"<0001>", "<10-10>", "<2-1-10>"}; + } + return {"<0001>", "<10-10>", "<11-20>"}; } // ----------------------------------------------------------------------------- std::vector HexagonalLowOps::generatePoleFigure(PoleFigureConfiguration_t& config) const { - std::array labels = getDefaultPoleFigureNames(); + std::array labels = getDefaultPoleFigureNames(config.hexConvention); std::string label0 = labels[0]; std::string label1 = labels[1]; std::string label2 = labels[2]; @@ -1243,7 +1357,7 @@ std::vector HexagonalLowOps::generatePoleFigur config.sphereRadius = 1.0; // Generate the coords on the sphere **** Parallelized - generateSphereCoordsFromEulers(config.eulers, xyz001.get(), xyz011.get(), xyz111.get()); + generateSphereCoordsFromEulers(config.eulers, xyz001.get(), xyz011.get(), xyz111.get(), config.hexConvention); // These arrays hold the "intensity" images which eventually get converted to an actual Color RGB image // Generate the modified Lambert projection images (Squares, 2 of them, 1 for Northern Hemisphere, 1 for Southern Hemisphere @@ -1366,7 +1480,7 @@ std::vector HexagonalLowOps::generatePoleFigur namespace { // ----------------------------------------------------------------------------- -ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const HexagonalLowOps* ops, int imageDim, bool generateEntirePlane) +ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const HexagonalLowOps* ops, int imageDim, bool generateEntirePlane, const ebsdlib::IColorKey* key) { std::vector dims(1, 4); @@ -1424,7 +1538,7 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const HexagonalLowOps* ops, int else { auto sphericalCoords = stereographic::utils::StereoToSpherical(x, y).normalize(); - color = ops->generateIPFColor(k_Orientation.data(), sphericalCoords.data(), false); + color = ops->computeIPFColor(k_Orientation.data(), sphericalCoords.data(), false, key); } pixelPtr[idx] = color; } @@ -1434,8 +1548,59 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const HexagonalLowOps* ops, int } // ----------------------------------------------------------------------------- -void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, std::vector margins, std::array figureOrigin, std::array figureCenter, - bool drawFullCircle) +} // namespace + +// ----------------------------------------------------------------------------- +bool HexagonalLowOps::mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const +{ + double xInc = 1.0 / static_cast(imageDim); + double yInc = 1.0 / static_cast(imageDim); + + double x = -1.0 + 2.0 * xPixel * xInc; + double y = -1.0 + 2.0 * yPixel * yInc; + + double sumSquares = (x * x) + (y * y); + if(sumSquares > 1.0) + { + return false; + } + + if(x < 0.0 || y < 0.0) + { + return false; + } + + // Find the slope of the bounding line. + static const double m = std::sin(60.0 * ebsdlib::constants::k_PiOver180D) / std::cos(60.0 * ebsdlib::constants::k_PiOver180D); + + if(x < y / m) + { + return false; + } + + auto sc = stereographic::utils::StereoToSpherical(x, y).normalize(); + + sphereDir[0] = static_cast(sc[0]); + sphereDir[1] = static_cast(sc[1]); + sphereDir[2] = static_cast(sc[2]); + return true; +} + +// ----------------------------------------------------------------------------- +std::array HexagonalLowOps::adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const +{ + if(!generateEntirePlane) + { + figureOrigin[0] = -(legendWidth / 2) * 0.25F; + figureOrigin[1] = margins[0]; + } + return figureOrigin; +} + +// ----------------------------------------------------------------------------- +void HexagonalLowOps::drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, + std::array figureCenter, bool drawFullCircle, ebsdlib::HexConvention conv) const { int legendHeight = canvasDim - margins[0] - margins[2]; int legendWidth = canvasDim - margins[1] - margins[3]; @@ -1454,7 +1619,11 @@ void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float int halfHeight = legendHeight / 2; std::vector angles = {0.0f, 30.0f, 60.0f, 90.0f, 120.0f, 150.0f, 180.0f, 210.0f, 240.0f, 270.0f, 300.0f, 330.0f}; - std::vector labels2 = {"[2-1-10]", "[10-10]", "[11-20]", "[01-10]", "[-12-10]", "[-1100]", "[-2110]", "[-1010]", "[-1-120]", "[0-110]", "[1-210]", "[1-100]"}; + + // See HexagonalOps::drawIPFAnnotations for the X||a / X||a* label-table reasoning. + static const std::vector labels_X_a = {"[2-1-10]", "[10-10]", "[11-20]", "[01-10]", "[-12-10]", "[-1100]", "[-2110]", "[-1010]", "[-1-120]", "[0-110]", "[1-210]", "[1-100]"}; + static const std::vector labels_X_astar = {"[10-10]", "[11-20]", "[01-10]", "[-12-10]", "[-1100]", "[-2110]", "[-1010]", "[-1-120]", "[0-110]", "[1-210]", "[1-100]", "[2-1-10]"}; + const std::vector& labels2 = (conv == ebsdlib::HexConvention::XParallelA) ? labels_X_a : labels_X_astar; std::vector xAdj = { 0.1F, 0.0F, 0.0F, -0.5F, -1.0F, -1.0F, -1.1F, -1.1F, -1.1F, -0.5F, 0.0F, 0.0F, @@ -1530,21 +1699,14 @@ void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float } } -} // namespace - // ----------------------------------------------------------------------------- -ebsdlib::UInt8ArrayType::Pointer HexagonalLowOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane) const +ebsdlib::UInt8ArrayType::Pointer HexagonalLowOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane, ebsdlib::HexConvention conv, ebsdlib::ColorKeyKind kind, bool gridded) const { - // Figure out the Legend Pixel Size + // Compute legend dimensions (same formula as annotateIPFImage uses) const float fontPtSize = static_cast(canvasDim) / 24.0f; - const std::vector margins = {fontPtSize * 3, // Top - static_cast(canvasDim / 7.0f), // Right - fontPtSize * 2, // Bottom - static_cast(canvasDim / 7.0f)}; // Left - - int legendHeight = canvasDim - margins[0] - margins[2]; - int legendWidth = canvasDim - margins[1] - margins[3]; - + const std::vector margins = {fontPtSize * 3, static_cast(canvasDim / 7.0f), fontPtSize * 2, static_cast(canvasDim / 7.0f)}; + int legendHeight = canvasDim - static_cast(margins[0]) - static_cast(margins[2]); + int legendWidth = canvasDim - static_cast(margins[1]) - static_cast(margins[3]); if(legendHeight > legendWidth) { legendHeight = legendWidth; @@ -1553,64 +1715,17 @@ ebsdlib::UInt8ArrayType::Pointer HexagonalLowOps::generateIPFTriangleLegend(int { legendWidth = legendHeight; } - int pageHeight = canvasDim; - int pageWidth = canvasDim; - int halfWidth = legendWidth / 2; - int halfHeight = legendHeight / 2; - std::array figureOrigin = {margins[3], margins[0] * 1.33F}; - if(!generateEntirePlane) + // Generate the colored SST triangle image (ARGB) + ebsdlib::IColorKey::Pointer key = keyForKind(kind); + if(gridded) { - figureOrigin[0] = 0.0F - halfWidth * 0.25F; - figureOrigin[1] = 0.0F + margins[0]; + key = std::make_shared(key, 1.0); } - std::array figureCenter = {figureOrigin[0] + halfWidth, figureOrigin[1] + halfHeight}; - - ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane); - - // Create a Canvas to draw into - canvas_ity::canvas context(pageWidth, pageHeight); - - std::vector latoBold = ebsdlib::fonts::GetLatoBold(); - std::vector latoRegular = ebsdlib::fonts::GetLatoRegular(); - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize); - context.set_color(canvas_ity::fill_style, 0.0f, 0.0f, 0.0f, 1.0f); - canvas_ity::baseline_style const baselines[] = {canvas_ity::alphabetic, canvas_ity::top, canvas_ity::middle, canvas_ity::bottom, canvas_ity::hanging, canvas_ity::ideographic}; - context.text_baseline = baselines[0]; - - // Fill the whole background with white - context.move_to(0.0f, 0.0f); - context.line_to(static_cast(pageWidth), 0.0f); - context.line_to(static_cast(pageWidth), static_cast(pageHeight)); - context.line_to(0.0f, static_cast(pageHeight)); - context.line_to(0.0f, 0.0f); - context.close_path(); - context.set_color(canvas_ity::fill_style, 1.0f, 1.0f, 1.0f, 1.0f); - context.fill(); - - // Convert from ARGB to RGBA which is what canvas_itk wants - image = ebsdlib::ConvertColorOrder(image.get(), legendHeight); - - // We need to mirror across the X Axis because the image was drawn with +Y pointing down - image = ebsdlib::MirrorImage(image.get(), legendHeight); - - context.draw_image(image->getPointer(0), legendWidth, legendHeight, legendWidth * image->getNumberOfComponents(), figureOrigin[0], figureOrigin[1], static_cast(legendWidth), - static_cast(legendHeight)); - - // Draw Title of Legend - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize * 1.5); - ebsdlib::WriteText(context, getSymmetryName(), {margins[0], static_cast(fontPtSize * 1.5)}, fontPtSize * 1.5); - - context.set_font(latoRegular.data(), static_cast(latoRegular.size()), fontPtSize); - DrawFullCircleAnnotations(context, canvasDim, fontPtSize, margins, figureOrigin, figureCenter, generateEntirePlane); - - // Fetch the rendered RGBA pixels from the entire canvas. - ebsdlib::UInt8ArrayType::Pointer rgbaCanvasImage = ebsdlib::UInt8ArrayType::CreateArray(pageHeight * pageWidth, {4ULL}, "Triangle Legend", true); - // std::vector rgbaCanvasImage(static_cast(pageHeight * pageWidth * 4)); - context.get_image_data(rgbaCanvasImage->getPointer(0), pageWidth, pageHeight, pageWidth * 4, 0, 0); + ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane, key.get()); - rgbaCanvasImage = ebsdlib::RemoveAlphaChannel(rgbaCanvasImage.get()); - return rgbaCanvasImage; + // Annotate with title and Miller index labels + return annotateIPFImage(image, legendHeight, canvasDim, getSymmetryName(), generateEntirePlane, false, conv); } // ----------------------------------------------------------------------------- diff --git a/Source/EbsdLib/LaueOps/HexagonalLowOps.h b/Source/EbsdLib/LaueOps/HexagonalLowOps.h index 8a54952e..5a3685d2 100644 --- a/Source/EbsdLib/LaueOps/HexagonalLowOps.h +++ b/Source/EbsdLib/LaueOps/HexagonalLowOps.h @@ -199,7 +199,8 @@ class EbsdLib_EXPORT HexagonalLowOps : public LaueOps double getF1spt(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; double getF7(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; - void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3) const override; + void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3, + ebsdlib::HexConvention conv) const override; /** * @brief * @param eta Optional input value only needed for the "Cubic" Laue classes @@ -213,7 +214,7 @@ class EbsdLib_EXPORT HexagonalLowOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateIPFColor Generates an ARGB Color from a Euler Angle and Reference Direction @@ -226,7 +227,7 @@ class EbsdLib_EXPORT HexagonalLowOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateRodriguesColor Generates an RGB Color from a Rodrigues Vector @@ -252,13 +253,22 @@ class EbsdLib_EXPORT HexagonalLowOps : public LaueOps * @brief Returns the names for each of the three standard pole figures that are generated. For example *<001>, <011> and <111> for a cubic system */ - std::array getDefaultPoleFigureNames() const override; + std::array getDefaultPoleFigureNames(ebsdlib::HexConvention conv) const override; /** * @brief generateStandardTriangle Generates an RGBA array that is a color "Standard" IPF Triangle Legend used for IPF Color Maps. * @return */ - ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane) const override; + ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane, ebsdlib::HexConvention conv, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL, + bool gridded = false) const override; + + bool mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const override; + + void drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, std::array figureCenter, + bool drawFullCircle, ebsdlib::HexConvention conv) const override; + + std::array adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const override; /** * @brief Returns if the given Quaternion is within the Rodrigues Fundamental Zone (RFZ) @@ -274,8 +284,6 @@ class EbsdLib_EXPORT HexagonalLowOps : public LaueOps */ bool isInsideFZ(const RodriguesDType& rod) const override; -protected: -public: HexagonalLowOps(const HexagonalLowOps&) = delete; // Copy Constructor Not Implemented HexagonalLowOps(HexagonalLowOps&&) = delete; // Move Constructor Not Implemented HexagonalLowOps& operator=(const HexagonalLowOps&) = delete; // Copy Assignment Not Implemented diff --git a/Source/EbsdLib/LaueOps/HexagonalOps.cpp b/Source/EbsdLib/LaueOps/HexagonalOps.cpp index 31095e45..66922cfb 100644 --- a/Source/EbsdLib/LaueOps/HexagonalOps.cpp +++ b/Source/EbsdLib/LaueOps/HexagonalOps.cpp @@ -48,7 +48,12 @@ #include "EbsdLib/Utilities/ComputeStereographicProjection.h" #include "EbsdLib/Utilities/EbsdStringUtils.hpp" #include "EbsdLib/Utilities/Fonts.hpp" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" +#include "EbsdLib/Utilities/GriddedColorKey.hpp" +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/PUCMColorKey.hpp" #include "EbsdLib/Utilities/PoleFigureUtilities.h" +#include "EbsdLib/Utilities/TSLColorKey.hpp" #ifdef EbsdLib_USE_PARALLEL_ALGORITHMS #include @@ -57,9 +62,29 @@ #endif using namespace ebsdlib; +namespace +{ +ebsdlib::IColorKey::Pointer keyForKind(ebsdlib::ColorKeyKind kind) +{ + static const auto k_TSL = std::make_shared(); + static const auto k_PUCM = std::make_shared("622"); + static const auto k_NH = std::make_shared(ebsdlib::FundamentalSectorGeometry::hexagonalHigh()); + switch(kind) + { + case ebsdlib::ColorKeyKind::PUCM: + return k_PUCM; + case ebsdlib::ColorKeyKind::NolzeHielscher: + return k_NH; + case ebsdlib::ColorKeyKind::TSL: + break; + } + return k_TSL; +} +} // namespace + namespace HexagonalHigh { -constexpr std::array k_OdfNumBins = {36, 36, 12}; // Represents a 5Deg bin +constexpr std::array k_OdfNumBins = {36, 36, 12}; // Represents a 5Deg bin in homochoric space static const std::array k_OdfDimInitValue = {std::pow((0.75 * (((ebsdlib::constants::k_PiOver2D)) - std::sin(((ebsdlib::constants::k_PiOver2D))))), (1.0 / 3.0)), std::pow((0.75 * (((ebsdlib::constants::k_PiOver2D)) - std::sin(((ebsdlib::constants::k_PiOver2D))))), (1.0 / 3.0)), @@ -168,6 +193,121 @@ static const std::vector k_MatSym = { constexpr double k_EtaMin = 0.0; constexpr double k_EtaMax = 30.0; constexpr double k_ChiMax = 90.0; + +// --------------------------------------------------------------------------- +// SymOps: convention-aware bundle of symmetry operations. +// +// CANONICAL = X||a*. The hand-typed k_QuatSym, k_RodSym, k_MatSym arrays +// above hold the hex 6/mmm symmetry rotations expressed in the X||a* +// (MTEX / Oxford) basis -- the v3 internal default. These values are the +// MTEX-validated source of truth (see the 1752-bucket regression at +// Data/Pole_Figure_Validation/). +// +// For the X||a (TSL/EDAX/legacy DREAM3D) convention, the SAME twelve +// physical rotations are expressed in a basis rotated by 30° about the +// c-axis, which in quaternion form is a similarity transform: +// +// S_X||a = q_30 * S_X||a* * conj(q_30) where q_30 = R_z(+30°) +// +// The X||a side is therefore *derived by construction* from the validated +// X||a* canonical, with the per-direction-table entries similarly rotated +// by R_z(+30°). Two static instances of SymOps live below (one per +// convention) so any caller that has selected a convention can read sym +// ops directly via a pointer flip rather than computing the conjugation +// per-call. +// +// Note on sym op ordering: the order of entries in k_QuatSym (and the per- +// family direction lists below) originates from the EMsoftOO project, +// hand-derived for loop efficiency in EMsoftOO's inner loops. There is no +// expected mathematical relationship between consecutive entries -- two +// hand-typed tables encoding the same orbit can legitimately disagree by +// index. Validation is therefore by *orbit equality*, not table equality. +// +// See Code_Review/v3_phase0_design_notes.md §16 for the canonical-direction +// reasoning and the v2 → v3 enumeration-mismatch finding that informed it. +// --------------------------------------------------------------------------- +struct SymOps +{ + std::vector quat; + std::vector rod; + std::vector mat; + + // Plane-family direction tables for generateSphereCoordsFromEulers, one + // unique direction per slot (the antipodes are written by the rendering + // loop). Sizes match k_SymSize0 / 2, k_SymSize1 / 2, k_SymSize2 / 2. + // + // Under X||a*, family-1's first member at (1, 0, 0) is the {10-10} + // plane normal a*1, and family-2's first member at (cos30, sin30, 0) + // is the {2-1-10} direction. Under X||a, those Cartesian numbers + // change because the basis rotates 30° about c. + std::vector dirsFamily0; // {0001} family + std::vector dirsFamily1; // {10-10} family + std::vector dirsFamily2; // {2-1-10} family + + template + static SymOps build() + { + // Canonical (X||a*) plane-family direction sets. Each entry is one + // unique direction; antipodes are emitted by the rendering loop. + const std::vector canonicalDirsFamily0 = {{0.0, 0.0, 1.0}}; + const std::vector canonicalDirsFamily1 = {{1.0, 0.0, 0.0}, {0.5, ebsdlib::constants::k_Root3Over2D, 0.0}, {-0.5, ebsdlib::constants::k_Root3Over2D, 0.0}}; + const std::vector canonicalDirsFamily2 = {{ebsdlib::constants::k_Root3Over2D, 0.5, 0.0}, {0.0, 1.0, 0.0}, {-ebsdlib::constants::k_Root3Over2D, 0.5, 0.0}}; + + if constexpr(Conv == ebsdlib::HexConvention::XParallelAStar) + { + // Trivial copy of the canonical (v3) tables. + return SymOps{k_QuatSym, k_RodSym, k_MatSym, canonicalDirsFamily0, canonicalDirsFamily1, canonicalDirsFamily2}; + } + else // XParallelA -- derive by 30°-about-c similarity transform. + { + // q_30 = quaternion of R_z(+30°). EbsdLib QuatD layout is (x, y, z, w). + const double sin15 = std::sin(15.0 * ebsdlib::constants::k_PiOver180D); + const double cos15 = std::cos(15.0 * ebsdlib::constants::k_PiOver180D); + const QuatD q30(0.0, 0.0, sin15, cos15); + const QuatD q30Inv = q30.conjugate(); + + // R_z(+30°) as a 3x3 matrix for rotating the cartesian direction tables. + const double c30 = ebsdlib::constants::k_Root3Over2D; // cos(30°) + const double s30 = 0.5; // sin(30°) + const ebsdlib::Matrix3X3D rz30(c30, -s30, 0.0, s30, c30, 0.0, 0.0, 0.0, 1.0); + + SymOps out; + out.quat.reserve(k_QuatSym.size()); + out.rod.reserve(k_QuatSym.size()); + out.mat.reserve(k_QuatSym.size()); + for(const auto& qStar : k_QuatSym) + { + const QuatD qA = q30 * qStar * q30Inv; + out.quat.push_back(qA); + // Derive matrix and Rodrigues forms from the conjugated quaternion + // so all three representations stay self-consistent. + out.mat.push_back(qA.toOrientationMatrix().toGMatrix()); + out.rod.push_back(qA.toRodrigues()); + } + + // Direction tables: rotate each entry by R_z(+30°) to land in X||a basis. + // c-axis is invariant; basal-plane vectors rotate. + out.dirsFamily0 = canonicalDirsFamily0; // c-axis: same in both bases + out.dirsFamily1.reserve(canonicalDirsFamily1.size()); + out.dirsFamily2.reserve(canonicalDirsFamily2.size()); + for(const auto& d : canonicalDirsFamily1) + { + out.dirsFamily1.push_back(rz30 * d); + } + for(const auto& d : canonicalDirsFamily2) + { + out.dirsFamily2.push_back(rz30 * d); + } + return out; + } + } +}; + +// Two static instances. Built once at TU static-init. Order is well-defined +// because they sit BELOW k_QuatSym / k_RodSym / k_MatSym in the same TU. +static const SymOps k_SymOps_XParallelAStar = SymOps::build(); +static const SymOps k_SymOps_XParallelA = SymOps::build(); + // Use a namespace for some detail that only this class needs } // namespace HexagonalHigh @@ -1089,86 +1229,59 @@ class GenerateSphereCoordsImpl ebsdlib::FloatArrayType* m_xyz001; ebsdlib::FloatArrayType* m_xyz011; ebsdlib::FloatArrayType* m_xyz111; + const SymOps* m_Sym; public: - GenerateSphereCoordsImpl(ebsdlib::FloatArrayType* eulerAngles, ebsdlib::FloatArrayType* xyz0001Coords, ebsdlib::FloatArrayType* xyz1010Coords, ebsdlib::FloatArrayType* xyz1120Coords) + GenerateSphereCoordsImpl(ebsdlib::FloatArrayType* eulerAngles, ebsdlib::FloatArrayType* xyz0001Coords, ebsdlib::FloatArrayType* xyz1010Coords, ebsdlib::FloatArrayType* xyz1120Coords, + const SymOps* sym) : m_Eulers(eulerAngles) , m_xyz001(xyz0001Coords) , m_xyz011(xyz1010Coords) , m_xyz111(xyz1120Coords) + , m_Sym(sym) { } virtual ~GenerateSphereCoordsImpl() = default; + // Project one direction at slot `s` of a family into the destination array + // and write its antipode in the next slot. `slot` is the unique-direction + // index (0, 1, ..., N-1); `slot * 2` is the byte offset in the destination + // measured in 3-tuples (each direction emits one + and one - = 2 tuples). + static inline void emitDirAndAntipode(const ebsdlib::Matrix3X3D& gTranspose, const ebsdlib::Matrix3X1D& dir, ebsdlib::FloatArrayType* dest, size_t pairOffsetTuples) + { + const size_t plus = pairOffsetTuples * 3; + const size_t minus = plus + 3; + (gTranspose * dir).copyInto(dest->getPointer(plus)); + std::transform(dest->getPointer(plus), dest->getPointer(plus + 3), dest->getPointer(minus), [](float v) { return v * -1.0F; }); + } + void generate(size_t start, size_t end) const { - ebsdlib::Matrix3X3D gTranspose; - ebsdlib::Matrix3X1D direction(0.0, 0.0, 0.0); + const size_t f0Stride = m_Sym->dirsFamily0.size() * 2; // tuples per orientation + const size_t f1Stride = m_Sym->dirsFamily1.size() * 2; + const size_t f2Stride = m_Sym->dirsFamily2.size() * 2; // Generate all the Coordinates for(size_t i = start; i < end; ++i) { - ebsdlib::Matrix3X3D g(EulerDType(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)).toOrientationMatrix().data()); - - gTranspose = g.transpose(); - - // ----------------------------------------------------------------------------- - // 0001 Family - direction[0] = 0.0; - direction[1] = 0.0; - direction[2] = 1.0; - (gTranspose * direction).copyInto(m_xyz001->getPointer(i * 6)); - std::transform(m_xyz001->getPointer(i * 6), m_xyz001->getPointer(i * 6 + 3), - m_xyz001->getPointer(i * 6 + 3), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 - - // ----------------------------------------------------------------------------- - // [10-10], also [210] - direction[0] = ebsdlib::constants::k_Root3Over2D; - direction[1] = 0.5; - direction[2] = 0.0; - (gTranspose * direction).copyInto(m_xyz011->getPointer(i * 18)); - std::transform(m_xyz011->getPointer(i * 18), m_xyz011->getPointer(i * 18 + 3), - m_xyz011->getPointer(i * 18 + 3), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 - direction[0] = 0.0; - direction[1] = 1.0; - direction[2] = 0.0; - (gTranspose * direction).copyInto(m_xyz011->getPointer(i * 18 + 6)); - std::transform(m_xyz011->getPointer(i * 18 + 6), m_xyz011->getPointer(i * 18 + 9), - m_xyz011->getPointer(i * 18 + 9), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 - direction[0] = -ebsdlib::constants::k_Root3Over2D; - direction[1] = 0.5; - direction[2] = 0.0; - (gTranspose * direction).copyInto(m_xyz011->getPointer(i * 18 + 12)); - std::transform(m_xyz011->getPointer(i * 18 + 12), m_xyz011->getPointer(i * 18 + 15), - m_xyz011->getPointer(i * 18 + 15), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 - - // ----------------------------------------------------------------------------- - // [2-1-10] also [100] - direction[0] = 1.0; - direction[1] = 0.0; - direction[2] = 0.0; - (gTranspose * direction).copyInto(m_xyz111->getPointer(i * 18)); - std::transform(m_xyz111->getPointer(i * 18), m_xyz111->getPointer(i * 18 + 3), - m_xyz111->getPointer(i * 18 + 3), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 - direction[0] = 0.5; - direction[1] = ebsdlib::constants::k_Root3Over2D; - direction[2] = 0.0; - (gTranspose * direction).copyInto(m_xyz111->getPointer(i * 18 + 6)); - std::transform(m_xyz111->getPointer(i * 18 + 6), m_xyz111->getPointer(i * 18 + 9), - m_xyz111->getPointer(i * 18 + 9), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 - direction[0] = -0.5; - direction[1] = ebsdlib::constants::k_Root3Over2D; - direction[2] = 0.0; - (gTranspose * direction).copyInto(m_xyz111->getPointer(i * 18 + 12)); - std::transform(m_xyz111->getPointer(i * 18 + 12), m_xyz111->getPointer(i * 18 + 15), - m_xyz111->getPointer(i * 18 + 15), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 + EulerDType euler(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)); + ebsdlib::Matrix3X3D gTranspose = euler.toOrientationMatrix().toGMatrix().transpose(); + + // 0001 Family (typically 1 unique direction; antipode written by emitDirAndAntipode). + for(size_t k = 0; k < m_Sym->dirsFamily0.size(); ++k) + { + emitDirAndAntipode(gTranspose, m_Sym->dirsFamily0[k], m_xyz001, i * f0Stride + k * 2); + } + // {10-10} plane-normal family (3 unique under hex 6/mmm). + for(size_t k = 0; k < m_Sym->dirsFamily1.size(); ++k) + { + emitDirAndAntipode(gTranspose, m_Sym->dirsFamily1[k], m_xyz011, i * f1Stride + k * 2); + } + // {2-1-10} plane-normal family (3 unique under hex 6/mmm), offset 30° from {10-10}. + for(size_t k = 0; k < m_Sym->dirsFamily2.size(); ++k) + { + emitDirAndAntipode(gTranspose, m_Sym->dirsFamily2[k], m_xyz111, i * f2Stride + k * 2); + } } } @@ -1182,7 +1295,8 @@ class GenerateSphereCoordsImpl } // namespace HexagonalHigh // ----------------------------------------------------------------------------- -void HexagonalOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz0001, ebsdlib::FloatArrayType* xyz1010, ebsdlib::FloatArrayType* xyz1120) const +void HexagonalOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz0001, ebsdlib::FloatArrayType* xyz1010, ebsdlib::FloatArrayType* xyz1120, + ebsdlib::HexConvention conv) const { size_t nOrientations = eulers->getNumberOfTuples(); @@ -1200,16 +1314,21 @@ void HexagonalOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* euler xyz1120->resizeTuples(nOrientations * HexagonalHigh::k_SymSize2 * 3); } + // Pick the convention-appropriate SymOps instance once. The two static + // instances (canonical X||a* and derived X||a) live in the HexagonalHigh + // namespace block above. + const HexagonalHigh::SymOps* sym = (conv == ebsdlib::HexConvention::XParallelAStar) ? &HexagonalHigh::k_SymOps_XParallelAStar : &HexagonalHigh::k_SymOps_XParallelA; + #ifdef EbsdLib_USE_PARALLEL_ALGORITHMS bool doParallel = true; if(doParallel) { - tbb::parallel_for(tbb::blocked_range(0, nOrientations), HexagonalHigh::GenerateSphereCoordsImpl(eulers, xyz0001, xyz1010, xyz1120), tbb::auto_partitioner()); + tbb::parallel_for(tbb::blocked_range(0, nOrientations), HexagonalHigh::GenerateSphereCoordsImpl(eulers, xyz0001, xyz1010, xyz1120, sym), tbb::auto_partitioner()); } else #endif { - HexagonalHigh::GenerateSphereCoordsImpl serial(eulers, xyz0001, xyz1010, xyz1120); + HexagonalHigh::GenerateSphereCoordsImpl serial(eulers, xyz0001, xyz1010, xyz1120, sym); serial.generate(0, nOrientations); } } @@ -1228,17 +1347,17 @@ bool HexagonalOps::inUnitTriangle(double eta, double chi) const } // ----------------------------------------------------------------------------- -ebsdlib::Rgb HexagonalOps::generateIPFColor(double* eulers, double* refDir, bool degToRad) const +ebsdlib::Rgb HexagonalOps::generateIPFColor(double* eulers, double* refDir, bool degToRad, ebsdlib::ColorKeyKind kind) const { - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- -ebsdlib::Rgb HexagonalOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad) const +ebsdlib::Rgb HexagonalOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad, ebsdlib::ColorKeyKind kind) const { double eulers[3] = {phi1, phi, phi2}; double refDir[3] = {refDir0, refDir1, refDir2}; - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- @@ -1263,15 +1382,26 @@ ebsdlib::Rgb HexagonalOps::generateRodriguesColor(double r1, double r2, double r } // ----------------------------------------------------------------------------- -std::array HexagonalOps::getDefaultPoleFigureNames() const +std::array HexagonalOps::getDefaultPoleFigureNames(ebsdlib::HexConvention conv) const { - return {"<0001>", "<10-10>", "<2-1-10>"}; + // The a-family slot is sym-equivalent under the 6-fold; <2-1-10> and + // <11-20> are different orbit members of the same physical family. + // Different software ecosystems pick different representatives: + // X||a (OIM / EDAX / legacy DREAM3D): <2-1-10> (the a-vector itself) + // X||a* (MTEX / Oxford): <11-20> + // Match the user's expected toolchain so the printed labels line up + // with what they see in OIM Analysis or MTEX side-by-side. + if(conv == ebsdlib::HexConvention::XParallelA) + { + return {"<0001>", "<10-10>", "<2-1-10>"}; + } + return {"<0001>", "<10-10>", "<11-20>"}; } // ----------------------------------------------------------------------------- std::vector HexagonalOps::generatePoleFigure(PoleFigureConfiguration_t& config) const { - std::array labels = getDefaultPoleFigureNames(); + std::array labels = getDefaultPoleFigureNames(config.hexConvention); std::string label0 = labels[0]; std::string label1 = labels[1]; std::string label2 = labels[2]; @@ -1291,7 +1421,7 @@ std::vector HexagonalOps::generatePoleFigure(P size_t numOrientations = config.eulers->getNumberOfTuples(); - // Create an Array to hold the XYZ Coordinates which are the coords on the sphere. + // Create an Array to hold the XYZ Coordinates, which are the coords on the sphere. // this is size for CUBIC ONLY, <001> Family std::vector dims(1, 3); ebsdlib::FloatArrayType::Pointer xyz001 = ebsdlib::FloatArrayType::CreateArray(numOrientations * HexagonalHigh::k_SymSize0, dims, label0 + std::string("xyzCoords"), true); @@ -1303,7 +1433,7 @@ std::vector HexagonalOps::generatePoleFigure(P config.sphereRadius = 1.0f; // Generate the coords on the sphere **** Parallelized - generateSphereCoordsFromEulers(config.eulers, xyz001.get(), xyz011.get(), xyz111.get()); + generateSphereCoordsFromEulers(config.eulers, xyz001.get(), xyz011.get(), xyz111.get(), config.hexConvention); // These arrays hold the "intensity" images which eventually get converted to an actual Color RGB image // Generate the modified Lambert projection images (Squares, 2 of them, 1 for Northern Hemisphere, 1 for Southern Hemisphere @@ -1426,7 +1556,7 @@ std::vector HexagonalOps::generatePoleFigure(P namespace { -ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const HexagonalOps* ops, int imageDim, bool generateEntirePlane) +ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const HexagonalOps* ops, int imageDim, bool generateEntirePlane, const ebsdlib::IColorKey* key) { std::vector dims(1, 4); std::string arrayName = EbsdStringUtils::replace(ops->getSymmetryName(), "/", "_"); @@ -1470,14 +1600,17 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const HexagonalOps* ops, int im { color = 0xFFFFFFFF; } - else if(!generateEntirePlane && x < 0.0F) + // Use <= here so the x=0 column (stereographic y-axis) is treated as + // outside the SST and rendered white. The original < produced a single + // stray vertical pixel column down the centerline of the image. + else if(!generateEntirePlane && x <= 0.0F) { color = 0xFFFFFFFF; } else { auto sphericalCoords = stereographic::utils::StereoToSpherical(x, y).normalize(); - color = ops->generateIPFColor(k_Orientation.data(), sphericalCoords.data(), false); + color = ops->computeIPFColor(k_Orientation.data(), sphericalCoords.data(), false, key); } pixelPtr[idx] = color; @@ -1488,8 +1621,62 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const HexagonalOps* ops, int im } // ----------------------------------------------------------------------------- -void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, std::vector margins, std::array figureOrigin, std::array figureCenter, - bool drawFullCircle) +} // namespace + +// ----------------------------------------------------------------------------- +bool HexagonalOps::mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const +{ + double xInc = 1.0 / static_cast(imageDim); + double yInc = 1.0 / static_cast(imageDim); + + double x = -1.0 + 2.0 * xPixel * xInc; + double y = -1.0 + 2.0 * yPixel * yInc; + + double sumSquares = (x * x) + (y * y); + if(sumSquares > 1.0) + { + return false; + } + + // Find the slope of the bounding line. + static const double m = -1.0 * std::sin(30.0 * ebsdlib::constants::k_PiOver180D) / std::cos(30.0 * ebsdlib::constants::k_PiOver180D); + + if(x < y / m && x > 0.0) + { + return false; + } + if(x > y / m && y > 0.0) + { + return false; + } + if(x < 0.0) + { + return false; + } + + auto sc = stereographic::utils::StereoToSpherical(x, y).normalize(); + + sphereDir[0] = static_cast(sc[0]); + sphereDir[1] = static_cast(sc[1]); + sphereDir[2] = static_cast(sc[2]); + return true; +} + +// ----------------------------------------------------------------------------- +std::array HexagonalOps::adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const +{ + if(!generateEntirePlane) + { + figureOrigin[0] = -margins[3] * 0.5F; + figureOrigin[1] = -(legendHeight / 2) + margins[0] + fontPtSize; + } + return figureOrigin; +} + +// ----------------------------------------------------------------------------- +void HexagonalOps::drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, + std::array figureCenter, bool drawFullCircle, ebsdlib::HexConvention conv) const { int legendHeight = canvasDim - margins[0] - margins[2]; int legendWidth = canvasDim - margins[1] - margins[3]; @@ -1508,7 +1695,13 @@ void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float int halfHeight = legendHeight / 2; std::vector angles = {0.0f, 30.0f, 60.0f, 90.0f, 120.0f, 150.0f, 180.0f, 210.0f, 240.0f, 270.0f, 300.0f, 330.0f}; - std::vector labels2 = {"[2-1-10]", "[10-10]", "[11-20]", "[01-10]", "[-12-10]", "[-1100]", "[-2110]", "[-1010]", "[-1-120]", "[0-110]", "[1-210]", "[1-100]"}; + + // X||a labels: cartesian +X = a-vector. Angle 0° = a = [2-1-10]; angle 30° = a* = [10-10]. + // X||a* labels: cartesian +X = a*-vector. Equivalent to rotating the X||a label list one slot + // to the left (labels_X_astar[i] = labels_X_a[(i + 1) % 12]) — under X||a* angle 0° = [10-10]. + static const std::vector labels_X_a = {"[2-1-10]", "[10-10]", "[11-20]", "[01-10]", "[-12-10]", "[-1100]", "[-2110]", "[-1010]", "[-1-120]", "[0-110]", "[1-210]", "[1-100]"}; + static const std::vector labels_X_astar = {"[10-10]", "[11-20]", "[01-10]", "[-12-10]", "[-1100]", "[-2110]", "[-1010]", "[-1-120]", "[0-110]", "[1-210]", "[1-100]", "[2-1-10]"}; + const std::vector& labels2 = (conv == ebsdlib::HexConvention::XParallelA) ? labels_X_a : labels_X_astar; std::vector xAdj = { 0.1F, 0.0F, 0.0F, -0.5F, -1.0F, -1.0F, -1.1F, -1.1F, -1.1F, -0.5F, 0.0F, 0.0F, @@ -1574,20 +1767,14 @@ void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float } } -} // namespace // ----------------------------------------------------------------------------- -ebsdlib::UInt8ArrayType::Pointer HexagonalOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane) const +ebsdlib::UInt8ArrayType::Pointer HexagonalOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane, ebsdlib::HexConvention conv, ebsdlib::ColorKeyKind kind, bool gridded) const { - // Figure out the Legend Pixel Size + // Compute legend dimensions (same formula as annotateIPFImage uses) const float fontPtSize = static_cast(canvasDim) / 24.0f; - const std::vector margins = {fontPtSize * 3, // Top - static_cast(canvasDim / 7.0f), // Right - fontPtSize * 2, // Bottom - static_cast(canvasDim / 7.0f)}; // Left - - int legendHeight = canvasDim - margins[0] - margins[2]; - int legendWidth = canvasDim - margins[1] - margins[3]; - + const std::vector margins = {fontPtSize * 3, static_cast(canvasDim / 7.0f), fontPtSize * 2, static_cast(canvasDim / 7.0f)}; + int legendHeight = canvasDim - static_cast(margins[0]) - static_cast(margins[2]); + int legendWidth = canvasDim - static_cast(margins[1]) - static_cast(margins[3]); if(legendHeight > legendWidth) { legendHeight = legendWidth; @@ -1596,64 +1783,17 @@ ebsdlib::UInt8ArrayType::Pointer HexagonalOps::generateIPFTriangleLegend(int can { legendWidth = legendHeight; } - int pageHeight = canvasDim; - int pageWidth = canvasDim; - int halfWidth = legendWidth / 2; - int halfHeight = legendHeight / 2; - std::array figureOrigin = {margins[3], margins[0] * 1.33F}; - if(!generateEntirePlane) + // Generate the colored SST triangle image (ARGB) + ebsdlib::IColorKey::Pointer key = keyForKind(kind); + if(gridded) { - figureOrigin[0] = 0.0 - margins[3] * 0.5F; // -halfWidth * 0.45F ; - figureOrigin[1] = 0.0F - halfHeight + margins[0] + fontPtSize; + key = std::make_shared(key, 1.0); } - std::array figureCenter = {figureOrigin[0] + halfWidth, figureOrigin[1] + halfHeight}; - - ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane); - - // Create a Canvas to draw into - canvas_ity::canvas context(pageWidth, pageHeight); - - std::vector latoBold = ebsdlib::fonts::GetLatoBold(); - std::vector latoRegular = ebsdlib::fonts::GetLatoRegular(); - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize); - context.set_color(canvas_ity::fill_style, 0.0f, 0.0f, 0.0f, 1.0f); - canvas_ity::baseline_style const baselines[] = {canvas_ity::alphabetic, canvas_ity::top, canvas_ity::middle, canvas_ity::bottom, canvas_ity::hanging, canvas_ity::ideographic}; - context.text_baseline = baselines[0]; - - // Fill the whole background with white - context.move_to(0.0f, 0.0f); - context.line_to(static_cast(pageWidth), 0.0f); - context.line_to(static_cast(pageWidth), static_cast(pageHeight)); - context.line_to(0.0f, static_cast(pageHeight)); - context.line_to(0.0f, 0.0f); - context.close_path(); - context.set_color(canvas_ity::fill_style, 1.0f, 1.0f, 1.0f, 1.0f); - context.fill(); - - // Convert from ARGB to RGBA which is what canvas_itk wants - image = ebsdlib::ConvertColorOrder(image.get(), legendHeight); - - // We need to mirror across the X Axis because the image was drawn with +Y pointing down - image = ebsdlib::MirrorImage(image.get(), legendHeight); - - context.draw_image(image->getPointer(0), legendWidth, legendHeight, legendWidth * image->getNumberOfComponents(), figureOrigin[0], figureOrigin[1], static_cast(legendWidth), - static_cast(legendHeight)); - - // Draw Title of Legend - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize * 1.5); - ebsdlib::WriteText(context, getSymmetryName(), {margins[0], static_cast(fontPtSize * 1.5)}, fontPtSize * 1.5); - - context.set_font(latoRegular.data(), static_cast(latoRegular.size()), fontPtSize); - DrawFullCircleAnnotations(context, canvasDim, fontPtSize, margins, figureOrigin, figureCenter, generateEntirePlane); - - // Fetch the rendered RGBA pixels from the entire canvas. - ebsdlib::UInt8ArrayType::Pointer rgbaCanvasImage = ebsdlib::UInt8ArrayType::CreateArray(pageHeight * pageWidth, {4ULL}, "Triangle Legend", true); - // std::vector rgbaCanvasImage(static_cast(pageHeight * pageWidth * 4)); - context.get_image_data(rgbaCanvasImage->getPointer(0), pageWidth, pageHeight, pageWidth * 4, 0, 0); + ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane, key.get()); - rgbaCanvasImage = ebsdlib::RemoveAlphaChannel(rgbaCanvasImage.get()); - return rgbaCanvasImage; + // Annotate with title and Miller index labels + return annotateIPFImage(image, legendHeight, canvasDim, getSymmetryName(), generateEntirePlane, false, conv); } // ----------------------------------------------------------------------------- diff --git a/Source/EbsdLib/LaueOps/HexagonalOps.h b/Source/EbsdLib/LaueOps/HexagonalOps.h index 6b52e38b..0193a09a 100644 --- a/Source/EbsdLib/LaueOps/HexagonalOps.h +++ b/Source/EbsdLib/LaueOps/HexagonalOps.h @@ -199,7 +199,8 @@ class EbsdLib_EXPORT HexagonalOps : public LaueOps double getF1spt(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; double getF7(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; - void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3) const override; + void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3, + ebsdlib::HexConvention conv) const override; /** * @brief * @param eta Optional input value only needed for the "Cubic" Laue classes @@ -213,7 +214,7 @@ class EbsdLib_EXPORT HexagonalOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateIPFColor Generates an ARGB Color from a Euler Angle and Reference Direction @@ -226,7 +227,7 @@ class EbsdLib_EXPORT HexagonalOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateRodriguesColor Generates an RGB Color from a Rodrigues Vector @@ -252,13 +253,22 @@ class EbsdLib_EXPORT HexagonalOps : public LaueOps * @brief Returns the names for each of the three standard pole figures that are generated. For example *<001>, <011> and <111> for a cubic system */ - std::array getDefaultPoleFigureNames() const override; + std::array getDefaultPoleFigureNames(ebsdlib::HexConvention conv) const override; /** * @brief generateStandardTriangle Generates an RGBA array that is a color "Standard" IPF Triangle Legend used for IPF Color Maps. * @return */ - ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane) const override; + ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane, ebsdlib::HexConvention conv, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL, + bool gridded = false) const override; + + bool mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const override; + + void drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, std::array figureCenter, + bool drawFullCircle, ebsdlib::HexConvention conv) const override; + + std::array adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const override; /** * @brief Returns if the given Quaternion is within the Rodrigues Fundamental Zone (RFZ) @@ -274,8 +284,6 @@ class EbsdLib_EXPORT HexagonalOps : public LaueOps */ bool isInsideFZ(const RodriguesDType& rod) const override; -protected: -public: HexagonalOps(const HexagonalOps&) = delete; // Copy Constructor Not Implemented HexagonalOps(HexagonalOps&&) = delete; // Move Constructor Not Implemented HexagonalOps& operator=(const HexagonalOps&) = delete; // Copy Assignment Not Implemented diff --git a/Source/EbsdLib/LaueOps/LaueOps.cpp b/Source/EbsdLib/LaueOps/LaueOps.cpp index 5909bfc4..d0bfffd3 100644 --- a/Source/EbsdLib/LaueOps/LaueOps.cpp +++ b/Source/EbsdLib/LaueOps/LaueOps.cpp @@ -49,14 +49,20 @@ #include "EbsdLib/LaueOps/TrigonalLowOps.h" #include "EbsdLib/LaueOps/TrigonalOps.h" #include "EbsdLib/Orientation/Quaternion.hpp" +#include "EbsdLib/Utilities/CanvasUtilities.hpp" #include "EbsdLib/Utilities/ColorTable.h" #include "EbsdLib/Utilities/ComputeStereographicProjection.h" +#include "EbsdLib/Utilities/Fonts.hpp" + +#include #include // for std::max #include #include +#include #include #include +#include /** | Index | Verified | Class | Rotation Point Group | Num Sym Ops | @@ -89,6 +95,8 @@ constexpr std::underlying_type_t to_underlying(Enum e) noexcept return static_cast>(e); } +constexpr float k_OdfBinStepSize = 5.0f; + } // namespace // ----------------------------------------------------------------------------- @@ -97,6 +105,12 @@ LaueOps::LaueOps() = default; // ----------------------------------------------------------------------------- LaueOps::~LaueOps() = default; +// ----------------------------------------------------------------------------- +std::array LaueOps::getOdfBinStepSize() const +{ + return {k_OdfBinStepSize, k_OdfBinStepSize, k_OdfBinStepSize}; +} + // ----------------------------------------------------------------------------- std::string LaueOps::FZTypeToString(const FZType value) { @@ -156,7 +170,7 @@ LaueOps::AxisOrderingType LaueOps::getAxisOrderingType() const } // ----------------------------------------------------------------------------- -ebsdlib::Rgb LaueOps::computeIPFColor(double* eulers, double* refDir, bool degToRad) const +ebsdlib::Rgb LaueOps::computeIPFColor(double* eulers, double* refDir, bool degToRad, const ebsdlib::IColorKey* key) const { const ebsdlib::Matrix3X1D refDirection(refDir); @@ -201,6 +215,15 @@ ebsdlib::Rgb LaueOps::computeIPFColor(double* eulers, double* refDir, bool degTo const std::array angleLimits = getIpfColorAngleLimits(eta); + if(key != nullptr) + { + auto [r, g, b] = key->direction2Color(eta, chi, angleLimits); + _rgb[0] = r; + _rgb[1] = g; + _rgb[2] = b; + return ebsdlib::RgbColor::dRgb(static_cast(_rgb[0] * 255), static_cast(_rgb[1] * 255), static_cast(_rgb[2] * 255), 255); + } + _rgb[0] = 1.0 - chi / angleLimits[2]; _rgb[2] = std::fabs(eta - angleLimits[0]) / (angleLimits[1] - angleLimits[0]); _rgb[1] = 1 - _rgb[2]; @@ -539,51 +562,36 @@ AxisAngleDType LaueOps::calculateMisorientationInternal(const std::vector } // ----------------------------------------------------------------------------- +// Find the crystal-symmetry-equivalent orientation of inRod with the smallest +// rotation angle from identity (the FZ representative nearest the origin in +// Rodrigues space). +// +// Done in quaternion space to avoid the singularity at 180° rotations where +// tan(θ/2) = ∞. Rodrigues-space symmetry reduction fails for 180° inputs +// because the infinity in the 4th component propagates as NaN through +// `rod · symRod` when any axis component is zero (IEEE 754: ∞ · 0 = NaN). +// +// Minimizing rotation angle ≡ maximizing |w| of the unit quaternion, since +// |w| = cos(θ/2). RodriguesDType LaueOps::_calcRodNearestOrigin(const RodriguesDType& inRod) const { - double denom = 0.0f, dist = 0.0f; - double smallestdist = 100000000.0f; - double rc1 = 0.0f, rc2 = 0.0f, rc3 = 0.0f; - RodriguesDType outRod; - // Turn into an actual 3 Comp Rodrigues Vector - RodriguesDType rod = inRod; - rod[0] *= rod[3]; - rod[1] *= rod[3]; - rod[2] *= rod[3]; - size_t numsym = getNumRodriguesSymOps(); + QuatD q = inRod.toQuaternion().getPositiveOrientation(); + QuatD qBest = q; + double largestAbsW = std::fabs(q.w()); + size_t numsym = getNumSymOps(); for(size_t i = 0; i < numsym; i++) { - RodriguesDType currentRodSymmetry = getRodSymOp(i); - // Convert Rodrigues 4 component into a 3 component - std::array symRod = {currentRodSymmetry[0] * currentRodSymmetry[3], currentRodSymmetry[1] * currentRodSymmetry[3], currentRodSymmetry[2] * currentRodSymmetry[3]}; - - denom = 1 - (rod[0] * symRod[0] + rod[1] * symRod[1] + rod[2] * symRod[2]); - rc1 = (rod[0] + symRod[0] - (rod[1] * symRod[2] - rod[2] * symRod[1])) / denom; - rc2 = (rod[1] + symRod[1] - (rod[2] * symRod[0] - rod[0] * symRod[2])) / denom; - rc3 = (rod[2] + symRod[2] - (rod[0] * symRod[1] - rod[1] * symRod[0])) / denom; - dist = rc1 * rc1 + rc2 * rc2 + rc3 * rc3; - if(dist < smallestdist) + QuatD qCandidate = (getQuatSymOp(i) * q).getPositiveOrientation(); + double absW = std::fabs(qCandidate.w()); + if(absW > largestAbsW) { - smallestdist = dist; - outRod[0] = rc1; - outRod[1] = rc2; - outRod[2] = rc3; + largestAbsW = absW; + qBest = qCandidate; } } - double mag = std::sqrt(outRod[0] * outRod[0] + outRod[1] * outRod[1] + outRod[2] * outRod[2]); - if(mag == 0.0f) - { - outRod[3] = std::numeric_limits::infinity(); - } - else - { - outRod[3] = mag; - outRod[0] = outRod[0] / outRod[3]; - outRod[1] = outRod[1] / outRod[3]; - outRod[2] = outRod[2] / outRod[3]; - } - return outRod; + + return qBest.toRodrigues(); } // ----------------------------------------------------------------------------- @@ -849,8 +857,392 @@ std::string LaueOps::ClassName() return {"LaueOps"}; } +//----------------------------------------------------------------------------- +std::vector LaueOps::generateInversePoleFigure(InversePoleFigureConfiguration_t& config) const +{ + std::vector ipfImages(3); + + // Determine labels + std::string label0 = "IPF-0"; + std::string label1 = "IPF-1"; + std::string label2 = "IPF-2"; + if(config.labels.size() >= 1) + { + label0 = config.labels[0]; + } + if(config.labels.size() >= 2) + { + label1 = config.labels[1]; + } + if(config.labels.size() >= 3) + { + label2 = config.labels[2]; + } + + // Step 1: Compute IPF directions for each sample direction + ebsdlib::FloatArrayType::Pointer dirs0 = InversePoleFigureUtilities::computeIPFDirections(*this, config.eulers, config.sampleDirections[0]); + ebsdlib::FloatArrayType::Pointer dirs1 = InversePoleFigureUtilities::computeIPFDirections(*this, config.eulers, config.sampleDirections[1]); + ebsdlib::FloatArrayType::Pointer dirs2 = InversePoleFigureUtilities::computeIPFDirections(*this, config.eulers, config.sampleDirections[2]); + + // Step 2: Compute intensity images for each (using stereographic SST mapping) + ebsdlib::DoubleArrayType::Pointer intensity0 = + InversePoleFigureUtilities::computeIPFIntensity(*this, dirs0.get(), config.imageWidth, config.imageHeight, config.lambertDim, config.normalizeMRD, true); + ebsdlib::DoubleArrayType::Pointer intensity1 = + InversePoleFigureUtilities::computeIPFIntensity(*this, dirs1.get(), config.imageWidth, config.imageHeight, config.lambertDim, config.normalizeMRD, true); + ebsdlib::DoubleArrayType::Pointer intensity2 = + InversePoleFigureUtilities::computeIPFIntensity(*this, dirs2.get(), config.imageWidth, config.imageHeight, config.lambertDim, config.normalizeMRD, true); + + // Step 3: Find global min/max across all 3 intensity images (only for pixels inside SST, value >= 0) + double globalMax = std::numeric_limits::lowest(); + double globalMin = std::numeric_limits::max(); + + std::array intensities = {intensity0.get(), intensity1.get(), intensity2.get()}; + for(auto* intensityArr : intensities) + { + double* dPtr = intensityArr->getPointer(0); + size_t count = intensityArr->getNumberOfTuples(); + for(size_t i = 0; i < count; ++i) + { + if(dPtr[i] >= 0.0) // Only consider pixels inside the SST + { + if(dPtr[i] > globalMax) + { + globalMax = dPtr[i]; + } + if(dPtr[i] < globalMin) + { + globalMin = dPtr[i]; + } + } + } + } + + // Handle case where no valid pixels were found + if(globalMax < globalMin) + { + globalMin = 0.0; + globalMax = 1.0; + } + + // Step 4: Create RGBA color images + std::vector dims = {4}; + ebsdlib::UInt8ArrayType::Pointer image0 = ebsdlib::UInt8ArrayType::CreateArray(static_cast(config.imageWidth * config.imageHeight), dims, label0, true); + ebsdlib::UInt8ArrayType::Pointer image1 = ebsdlib::UInt8ArrayType::CreateArray(static_cast(config.imageWidth * config.imageHeight), dims, label1, true); + ebsdlib::UInt8ArrayType::Pointer image2 = ebsdlib::UInt8ArrayType::CreateArray(static_cast(config.imageWidth * config.imageHeight), dims, label2, true); + + InversePoleFigureUtilities::createIPFColorImage(intensity0.get(), config.imageWidth, config.imageHeight, config.numColors, globalMin, globalMax, image0.get()); + InversePoleFigureUtilities::createIPFColorImage(intensity1.get(), config.imageWidth, config.imageHeight, config.numColors, globalMin, globalMax, image1.get()); + InversePoleFigureUtilities::createIPFColorImage(intensity2.get(), config.imageWidth, config.imageHeight, config.numColors, globalMin, globalMax, image2.get()); + + ipfImages[0] = image0; + ipfImages[1] = image1; + ipfImages[2] = image2; + + return ipfImages; +} + //----------------------------------------------------------------------------- ebsdlib::Rgb LaueOps::generateMisorientationColor(const QuatD& q, const QuatD& refFrame) const { throw std::runtime_error("LaueOps::generateMisorientationColor is not implemented."); } + +// ----------------------------------------------------------------------------- +bool LaueOps::mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const +{ + return false; +} + +// ----------------------------------------------------------------------------- +std::array LaueOps::adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const +{ + return figureOrigin; +} + +// ----------------------------------------------------------------------------- +UInt8ArrayType::Pointer LaueOps::annotateIPFImage(UInt8ArrayType::Pointer triangleImage, int imageDim, int canvasDim, const std::string& title, bool generateEntirePlane, bool hasColorBar, + ebsdlib::HexConvention conv) const +{ + const float fontPtSize = static_cast(canvasDim) / 24.0f; + // When a color bar will be drawn, use a wider right margin to make room + float rightMargin = hasColorBar ? static_cast(canvasDim / 3.5f) : static_cast(canvasDim / 7.0f); + const std::vector margins = { + fontPtSize * 3, // Top + rightMargin, // Right + fontPtSize * 2, // Bottom + static_cast(canvasDim / 7.0f) // Left + }; + + int legendHeight = canvasDim - static_cast(margins[0]) - static_cast(margins[2]); + int legendWidth = canvasDim - static_cast(margins[1]) - static_cast(margins[3]); + + if(legendHeight > legendWidth) + { + legendHeight = legendWidth; + } + else + { + legendWidth = legendHeight; + } + + int halfWidth = legendWidth / 2; + int halfHeight = legendHeight / 2; + + std::array figureOrigin = {margins[3], margins[0] * 1.33F}; + figureOrigin = adjustFigureOrigin(figureOrigin, legendWidth, legendHeight, margins, fontPtSize, generateEntirePlane); + + std::array figureCenter = {figureOrigin[0] + halfWidth, figureOrigin[1] + halfHeight}; + + // Convert from ARGB to RGBA for canvas_ity + ebsdlib::UInt8ArrayType::Pointer image = ebsdlib::ConvertColorOrder(triangleImage.get(), imageDim); + // Mirror across X axis (image drawn with +Y pointing down) + image = ebsdlib::MirrorImage(image.get(), imageDim); + + // Create canvas + canvas_ity::canvas context(canvasDim, canvasDim); + + std::vector latoBold = ebsdlib::fonts::GetLatoBold(); + std::vector latoRegular = ebsdlib::fonts::GetLatoRegular(); + context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize); + context.set_color(canvas_ity::fill_style, 0.0f, 0.0f, 0.0f, 1.0f); + context.text_baseline = canvas_ity::alphabetic; + + // Fill background with white + context.move_to(0.0f, 0.0f); + context.line_to(static_cast(canvasDim), 0.0f); + context.line_to(static_cast(canvasDim), static_cast(canvasDim)); + context.line_to(0.0f, static_cast(canvasDim)); + context.line_to(0.0f, 0.0f); + context.close_path(); + context.set_color(canvas_ity::fill_style, 1.0f, 1.0f, 1.0f, 1.0f); + context.fill(); + + // Draw the triangle image onto the canvas + context.draw_image(image->getPointer(0), imageDim, imageDim, imageDim * image->getNumberOfComponents(), figureOrigin[0], figureOrigin[1], static_cast(legendWidth), + static_cast(legendHeight)); + + // Draw title + context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize * 1.5); + ebsdlib::WriteText(context, title, {margins[0], static_cast(fontPtSize * 1.5)}, fontPtSize * 1.5); + + // Draw per-subclass annotations (Miller indices, SST boundary lines) + context.set_font(latoRegular.data(), static_cast(latoRegular.size()), fontPtSize); + drawIPFAnnotations(context, canvasDim, fontPtSize, margins, figureOrigin, figureCenter, generateEntirePlane, conv); + + // Extract rendered pixels and remove alpha channel + ebsdlib::UInt8ArrayType::Pointer rgbaCanvasImage = ebsdlib::UInt8ArrayType::CreateArray(canvasDim * canvasDim, {4ULL}, "Annotated IPF", true); + context.get_image_data(rgbaCanvasImage->getPointer(0), canvasDim, canvasDim, canvasDim * 4, 0, 0); + + return ebsdlib::RemoveAlphaChannel(rgbaCanvasImage.get()); +} + +// ----------------------------------------------------------------------------- +UInt8ArrayType::Pointer LaueOps::drawColorBar(UInt8ArrayType::Pointer image, int canvasDim, int numColors, double minValue, double maxValue, bool isMRD) const +{ + const float fontPtSize = static_cast(canvasDim) / 24.0f; + + // Generate the color table + std::vector colors(numColors * 3, 0.0f); + EbsdColorTable::GetColorTable(numColors, colors); + + // Create a canvas from the existing RGB image by first adding an alpha channel + const size_t numPixels = static_cast(canvasDim * canvasDim); + ebsdlib::UInt8ArrayType::Pointer rgbaImage = ebsdlib::UInt8ArrayType::CreateArray(numPixels, {4ULL}, "ColorBarCanvas", true); + uint8_t* srcPtr = image->getPointer(0); + uint8_t* dstPtr = rgbaImage->getPointer(0); + for(size_t i = 0; i < numPixels; i++) + { + dstPtr[i * 4 + 0] = srcPtr[i * 3 + 0]; + dstPtr[i * 4 + 1] = srcPtr[i * 3 + 1]; + dstPtr[i * 4 + 2] = srcPtr[i * 3 + 2]; + dstPtr[i * 4 + 3] = 255; + } + + canvas_ity::canvas context(canvasDim, canvasDim); + // Put the existing image onto the canvas + context.draw_image(rgbaImage->getPointer(0), canvasDim, canvasDim, canvasDim * 4, 0.0f, 0.0f, static_cast(canvasDim), static_cast(canvasDim)); + + // Color bar dimensions — positioned in the right margin area + // Compute the figure right edge using the same layout as annotateIPFImage with hasColorBar=true + float rightMargin = static_cast(canvasDim / 3.5f); + float leftMargin = static_cast(canvasDim / 7.0f); + float topMargin = fontPtSize * 3; + float bottomMargin = fontPtSize * 2; + int legendHeight = canvasDim - static_cast(topMargin) - static_cast(bottomMargin); + int legendWidth = canvasDim - static_cast(rightMargin) - static_cast(leftMargin); + if(legendHeight > legendWidth) + { + legendHeight = legendWidth; + } + float figureRightEdge = leftMargin + static_cast(legendWidth); + + const float barLeft = figureRightEdge + fontPtSize * 2.5f; + const float barTop = topMargin * 1.33f; + const float barWidth = fontPtSize * 0.8f; + const float barHeight = static_cast(legendHeight) * 0.75f; + + // Draw color bar segments + int colorSegments = numColors; + float segmentHeight = barHeight / static_cast(colorSegments); + for(int i = 0; i < colorSegments; i++) + { + // Map from top (max) to bottom (min) + int colorIdx = (colorSegments - 1 - i) * 3; + float r = colors[colorIdx + 0]; + float g = colors[colorIdx + 1]; + float b = colors[colorIdx + 2]; + + float segTop = barTop + static_cast(i) * segmentHeight; + context.begin_path(); + context.move_to(barLeft, segTop); + context.line_to(barLeft + barWidth, segTop); + context.line_to(barLeft + barWidth, segTop + segmentHeight); + context.line_to(barLeft, segTop + segmentHeight); + context.close_path(); + context.set_color(canvas_ity::fill_style, r, g, b, 1.0f); + context.fill(); + } + + // Draw border around color bar + context.begin_path(); + context.move_to(barLeft, barTop); + context.line_to(barLeft + barWidth, barTop); + context.line_to(barLeft + barWidth, barTop + barHeight); + context.line_to(barLeft, barTop + barHeight); + context.close_path(); + context.set_color(canvas_ity::stroke_style, 0.0f, 0.0f, 0.0f, 1.0f); + context.set_line_width(1.0f); + context.stroke(); + + // Draw min/max labels + std::vector latoRegular = ebsdlib::fonts::GetLatoRegular(); + context.set_font(latoRegular.data(), static_cast(latoRegular.size()), fontPtSize * 0.8f); + context.set_color(canvas_ity::fill_style, 0.0f, 0.0f, 0.0f, 1.0f); + + // Format min/max values + std::ostringstream maxStr; + maxStr << std::fixed << std::setprecision(2) << maxValue; + std::ostringstream minStr; + minStr << std::fixed << std::setprecision(2) << minValue; + + float labelX = barLeft + barWidth + fontPtSize * 0.3f; + ebsdlib::WriteText(context, maxStr.str(), {labelX, barTop + fontPtSize * 0.3f}, fontPtSize * 0.8f); + ebsdlib::WriteText(context, minStr.str(), {labelX, barTop + barHeight}, fontPtSize * 0.8f); + + // Draw MRD or counts label + std::string unitLabel = isMRD ? "MRD" : "Counts"; + std::vector latoBold = ebsdlib::fonts::GetLatoBold(); + context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize * 0.7f); + ebsdlib::WriteText(context, unitLabel, {barLeft, barTop - fontPtSize * 0.5f}, fontPtSize * 0.7f); + + // Extract and remove alpha + ebsdlib::UInt8ArrayType::Pointer outRgba = ebsdlib::UInt8ArrayType::CreateArray(numPixels, {4ULL}, "ColorBarOutput", true); + context.get_image_data(outRgba->getPointer(0), canvasDim, canvasDim, canvasDim * 4, 0, 0); + + return ebsdlib::RemoveAlphaChannel(outRgba.get()); +} + +// ----------------------------------------------------------------------------- +std::vector LaueOps::generateAnnotatedIPFDensity(InversePoleFigureConfiguration_t& config, std::pair* outMinMax) const +{ + // Validate square images + if(config.imageWidth != config.imageHeight) + { + throw std::runtime_error("generateAnnotatedIPFDensity requires square images (imageWidth == imageHeight)."); + } + + const int imageDim = config.imageWidth; + const int canvasDim = static_cast(static_cast(imageDim) * 1.5f); + + // Determine labels + std::string label0 = "IPF-0"; + std::string label1 = "IPF-1"; + std::string label2 = "IPF-2"; + if(config.labels.size() >= 1) + { + label0 = config.labels[0]; + } + if(config.labels.size() >= 2) + { + label1 = config.labels[1]; + } + if(config.labels.size() >= 3) + { + label2 = config.labels[2]; + } + + // Step 1: Compute IPF directions for each sample direction + ebsdlib::FloatArrayType::Pointer dirs0 = InversePoleFigureUtilities::computeIPFDirections(*this, config.eulers, config.sampleDirections[0]); + ebsdlib::FloatArrayType::Pointer dirs1 = InversePoleFigureUtilities::computeIPFDirections(*this, config.eulers, config.sampleDirections[1]); + ebsdlib::FloatArrayType::Pointer dirs2 = InversePoleFigureUtilities::computeIPFDirections(*this, config.eulers, config.sampleDirections[2]); + + // Step 2: Compute intensity images (using stereographic SST mapping) + ebsdlib::DoubleArrayType::Pointer intensity0 = InversePoleFigureUtilities::computeIPFIntensity(*this, dirs0.get(), imageDim, imageDim, config.lambertDim, config.normalizeMRD, true); + ebsdlib::DoubleArrayType::Pointer intensity1 = InversePoleFigureUtilities::computeIPFIntensity(*this, dirs1.get(), imageDim, imageDim, config.lambertDim, config.normalizeMRD, true); + ebsdlib::DoubleArrayType::Pointer intensity2 = InversePoleFigureUtilities::computeIPFIntensity(*this, dirs2.get(), imageDim, imageDim, config.lambertDim, config.normalizeMRD, true); + + // Step 3: Find global min/max + double globalMax = std::numeric_limits::lowest(); + double globalMin = std::numeric_limits::max(); + + std::array intensities = {intensity0.get(), intensity1.get(), intensity2.get()}; + for(auto* intensityArr : intensities) + { + double* dPtr = intensityArr->getPointer(0); + size_t count = intensityArr->getNumberOfTuples(); + for(size_t i = 0; i < count; ++i) + { + if(dPtr[i] >= 0.0) + { + if(dPtr[i] > globalMax) + { + globalMax = dPtr[i]; + } + if(dPtr[i] < globalMin) + { + globalMin = dPtr[i]; + } + } + } + } + + if(globalMax < globalMin) + { + globalMin = 0.0; + globalMax = 1.0; + } + + if(outMinMax != nullptr) + { + *outMinMax = {globalMin, globalMax}; + } + + // Step 4: Create RGBA color images + std::vector dims = {4}; + ebsdlib::UInt8ArrayType::Pointer image0 = ebsdlib::UInt8ArrayType::CreateArray(static_cast(imageDim * imageDim), dims, label0, true); + ebsdlib::UInt8ArrayType::Pointer image1 = ebsdlib::UInt8ArrayType::CreateArray(static_cast(imageDim * imageDim), dims, label1, true); + ebsdlib::UInt8ArrayType::Pointer image2 = ebsdlib::UInt8ArrayType::CreateArray(static_cast(imageDim * imageDim), dims, label2, true); + + InversePoleFigureUtilities::createIPFColorImage(intensity0.get(), imageDim, imageDim, config.numColors, globalMin, globalMax, image0.get()); + InversePoleFigureUtilities::createIPFColorImage(intensity1.get(), imageDim, imageDim, config.numColors, globalMin, globalMax, image1.get()); + InversePoleFigureUtilities::createIPFColorImage(intensity2.get(), imageDim, imageDim, config.numColors, globalMin, globalMax, image2.get()); + + // Step 5: Build title strings + std::string titlePrefix = config.phaseName.empty() ? "" : config.phaseName + " - "; + + // Step 6: Annotate each image. Forward config.hexConvention so the + // Miller-index labels drawn around each SST honor the caller's choice + // (PR 2k); without this, hex/trig IPF density images silently render + // labels under the default convention regardless of caller intent. + UInt8ArrayType::Pointer annotated0 = annotateIPFImage(image0, imageDim, canvasDim, titlePrefix + label0, false, true, config.hexConvention); + UInt8ArrayType::Pointer annotated1 = annotateIPFImage(image1, imageDim, canvasDim, titlePrefix + label1, false, true, config.hexConvention); + UInt8ArrayType::Pointer annotated2 = annotateIPFImage(image2, imageDim, canvasDim, titlePrefix + label2, false, true, config.hexConvention); + + // Step 7: Add color bars + annotated0 = drawColorBar(annotated0, canvasDim, config.numColors, globalMin, globalMax, config.normalizeMRD); + annotated1 = drawColorBar(annotated1, canvasDim, config.numColors, globalMin, globalMax, config.normalizeMRD); + annotated2 = drawColorBar(annotated2, canvasDim, config.numColors, globalMin, globalMax, config.normalizeMRD); + + return {annotated0, annotated1, annotated2}; +} diff --git a/Source/EbsdLib/LaueOps/LaueOps.h b/Source/EbsdLib/LaueOps/LaueOps.h index 451d183b..87aa43d5 100644 --- a/Source/EbsdLib/LaueOps/LaueOps.h +++ b/Source/EbsdLib/LaueOps/LaueOps.h @@ -34,11 +34,16 @@ * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ #pragma once +#include #include #include +#include #include +#include + #include "EbsdLib/Core/EbsdDataArray.hpp" +#include "EbsdLib/Core/EbsdLibConstants.h" #include "EbsdLib/EbsdLib.h" #include "EbsdLib/Math/Matrix3X3.hpp" #include "EbsdLib/Orientation/AxisAngle.hpp" @@ -46,7 +51,11 @@ #include "EbsdLib/Orientation/OrientationFwd.hpp" #include "EbsdLib/Orientation/Quaternion.hpp" #include "EbsdLib/Orientation/Rodrigues.hpp" +#include "EbsdLib/Utilities/GriddedColorKey.hpp" +#include "EbsdLib/Utilities/IColorKey.hpp" +#include "EbsdLib/Utilities/InversePoleFigureUtilities.h" #include "EbsdLib/Utilities/PoleFigureUtilities.h" +#include "EbsdLib/Utilities/TSLColorKey.hpp" namespace ebsdlib { @@ -161,6 +170,12 @@ class EbsdLib_EXPORT LaueOps */ virtual std::array getOdfNumBins() const = 0; + /** + * @breif Returns the ODF Bin step size, which is 5 degrees. + * @return + */ + virtual std::array getOdfBinStepSize() const; + /** * @brief calculateMisorientation Finds the misorientation between 2 quaternions and returns the result as an Axis Angle value * @param q1 Input Quaternion @@ -255,7 +270,15 @@ class EbsdLib_EXPORT LaueOps virtual double getF7(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const = 0; - virtual void generateSphereCoordsFromEulers(FloatArrayType* eulers, FloatArrayType* c1, FloatArrayType* c2, FloatArrayType* c3) const = 0; + /** + * @brief Generate the sphere-coordinate sets for the three default plane families + * @param conv Cartesian basis convention. Hex/trig overrides require an + * explicit XParallelA or XParallelAStar; non-hex/trig overrides + * default this to NotApplicable and ignore it internally. The + * base virtual has no default, so polymorphic callers must + * choose deliberately. + */ + virtual void generateSphereCoordsFromEulers(FloatArrayType* eulers, FloatArrayType* c1, FloatArrayType* c2, FloatArrayType* c3, ebsdlib::HexConvention conv) const = 0; static void RodriguesComposition(RodriguesDType sigma, RodriguesDType& rod); @@ -267,33 +290,31 @@ class EbsdLib_EXPORT LaueOps virtual std::array getIpfColorAngleLimits(double eta) const = 0; /** - * @brief generateIPFColor Generates an ARGB Color from an Euler Angle and Reference Direction + * @brief generateIPFColor Generates an ARGB Color from an Euler Angle and Reference Direction. + * + * IPF color is convention-invariant for all 11 Laue classes — both + * X||a and X||a* hex/trig bases produce identical SST colors because the + * standard stereographic triangle is invariant under the basis rotation + * between them. The hex/trig SymOps tables that drive the FZ reduction are + * chosen internally; callers don't pass a HexConvention here. + * * @param eulers Pointer to the 3 component Euler Angle * @param refDir Pointer to the 3 Component Reference Direction * @param convertDegrees Are the input angles in Degrees - * @return rgb [output] The pointer to store the RGB value + * @param kind Which per-class color key to use (TSL / PUCM / Nolze-Hielscher). + * Defaults to TSL. */ - virtual Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees) const = 0; + virtual Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const = 0; /** - * @brief generateIPFColor Generates an ARGB Color from an Euler Angle and Reference Direction - * @param e0 First component of the Euler Angle - * @param e1 Second component of the Euler Angle - * @param e2 Third component of the Euler Angle - * @param dir0 First component of the Reference Direction - * @param dir1 Second component of the Reference Direction - * @param dir2 Third component of the Reference Direction - * @param convertDegrees Are the input angles in Degrees - * @return rgb [output] The pointer to store the RGB value + * @brief generateIPFColor scalar overload. See pointer overload for semantics. */ - virtual Rgb generateIPFColor(double e0, double e1, double e2, double dir0, double dir1, double dir2, bool convertDegrees) const = 0; + virtual Rgb generateIPFColor(double e0, double e1, double e2, double dir0, double dir1, double dir2, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const = 0; /** - * @brief generateRodriguesColor Generates an RGB Color from a Rodrigues Vector - * @param r1 First component of the Rodrigues Vector - * @param r2 Second component of the Rodrigues Vector - * @param r3 Third component of the Rodrigues Vector - * @return rgb [output] The pointer to store the RGB value + * @brief generateRodriguesColor Generates an RGB Color from a Rodrigues Vector. + * + * Convention-invariant for the same reason generateIPFColor is. */ virtual Rgb generateRodriguesColor(double r1, double r2, double r3) const = 0; @@ -315,16 +336,89 @@ class EbsdLib_EXPORT LaueOps virtual std::vector generatePoleFigure(PoleFigureConfiguration_t& config) const = 0; /** - * @brief Returns the names for each of the three standard pole figures that are generated. For example - *<001>, <011> and <111> for a cubic system + * @brief Returns the names for each of the three standard pole figures that + * are generated. For example <001>, <011> and <111> for a cubic system. + * + * Hex/trig overrides require an explicit convention. Non-hex/trig overrides + * default this argument to NotApplicable. */ - virtual std::array getDefaultPoleFigureNames() const = 0; + virtual std::array getDefaultPoleFigureNames(ebsdlib::HexConvention conv) const = 0; /** - * @brief generateStandardTriangle Generates an RGBA array that is a color "Standard" IPF Triangle Legend used for IPF Color Maps. - * @return + * @brief Generate the colored, labeled IPF triangle legend. + * + * @param imageDim Square canvas size in pixels. + * @param generateEntirePlane true => full unit circle; false => SST only. + * @param conv Cartesian basis convention. Hex/trig overrides require an + * explicit convention; non-hex/trig overrides default to + * NotApplicable. The base virtual has no default, so polymorphic + * callers must choose deliberately. + * @param kind Which per-class color key to use. Defaults to TSL. + * @param gridded If true, wrap the selected key in a GriddedColorKey + * (~1° resolution) for MTEX-style flat-shaded cells. Only + * meaningful for legends; the per-pixel generateIPFColor + * path does not expose this knob. + */ + virtual UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane, ebsdlib::HexConvention conv, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL, + bool gridded = false) const = 0; + + /** + * @brief Computes the SST color for a Euler-rotated reference direction + * using the supplied color key. Runs the FZ symmetry-reduction loop common + * to every Laue class, then queries the key. + * + * @param key Color key to use (TSL/PUCM/NH/GriddedColorKey wrapper, etc.). + * If null, a built-in fallback coloring is used. + * + * Public so that the per-class CreateIPFLegend renderers can call it + * directly with a (possibly gridded-wrapped) key without going through + * generateIPFColor's kind enum. */ - virtual UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane) const = 0; + Rgb computeIPFColor(double* eulers, double* refDir, bool degToRad, const ebsdlib::IColorKey* key) const; + + /** + * @brief Per-subclass hook that draws Miller index labels and SST boundary + * annotations onto a canvas. Called by annotateIPFImage(). + */ + virtual void drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, std::array figureCenter, + bool drawFullCircle, ebsdlib::HexConvention conv) const = 0; + + /** + * @brief Maps a pixel coordinate to a unit sphere direction using the same + * stereographic projection as CreateIPFLegend (SST-only view). + * @param xPixel X pixel coordinate [0, imageDim) + * @param yPixel Y pixel coordinate [0, imageDim) + * @param imageDim Image dimension (square) + * @param sphereDir Output: unit sphere direction if pixel is inside SST + * @return true if the pixel maps to a point inside the Standard Stereographic Triangle + */ + virtual bool mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const; + + /** + * @brief Per-subclass hook that adjusts the figureOrigin when rendering + * SST-only view. Each subclass overrides to position its triangle shape + * correctly within the canvas. Default returns figureOrigin unchanged. + */ + virtual std::array adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const; + + /** + * @brief Generates 3 annotated inverse pole figure density images with + * title, Miller index labels, and MRD color bar. + * @param config Configuration struct; imageWidth must equal imageHeight (square images required) + * @param outMinMax Optional output for the global [min, max] intensity values + */ + std::vector generateAnnotatedIPFDensity(InversePoleFigureConfiguration_t& config, std::pair* outMinMax = nullptr) const; + + /** + * @brief Generates 3 inverse pole figure density images for 3 orthogonal sample directions. + * The IPF density plot shows how a sample direction distributes across crystal directions + * within the Standard Stereographic Triangle (SST) using equal-area projection. + * This is a non-virtual base class method that works through existing virtual dispatch. + * @param config The configuration struct controlling the IPF generation + * @return A std::vector of 3 UInt8ArrayType pointers, each representing a 2D RGBA image + */ + std::vector generateInversePoleFigure(InversePoleFigureConfiguration_t& config) const; enum class FZType : int32_t { @@ -439,6 +533,24 @@ class EbsdLib_EXPORT LaueOps protected: LaueOps(); + /** + * @brief Shared annotation scaffolding for IPF images. Creates a canvas, + * draws the triangle image, adds title and per-subclass annotations. + * @param triangleImage Pre-rendered ARGB image (square, imageDim x imageDim) + * @param imageDim Pixel dimension of the triangle image (square) + * @param canvasDim Pixel dimension of the output canvas (square) + * @param title Text to draw as the title + * @param generateEntirePlane true = full circle view, false = SST only + * @return RGB image (canvasDim x canvasDim, 3 components) + */ + UInt8ArrayType::Pointer annotateIPFImage(UInt8ArrayType::Pointer triangleImage, int imageDim, int canvasDim, const std::string& title, bool generateEntirePlane, bool hasColorBar, + ebsdlib::HexConvention conv) const; + + /** + * @brief Draws a color bar with min/max labels onto an existing RGB image. + */ + UInt8ArrayType::Pointer drawColorBar(UInt8ArrayType::Pointer image, int canvasDim, int numColors, double minValue, double maxValue, bool isMRD) const; + /** * @brief calculateMisorientationInternal * @param quatsym The Symmetry Quarternion from the specific Laue class @@ -497,16 +609,6 @@ class EbsdLib_EXPORT LaueOps */ int _calcODFBin(double dim[3], double bins[3], double step[3], const HomochoricDType& homochoric) const; - /** - * @brief Generates an IPF Color for a given Euler and Reference Direction. This should be called from the subclass so the - * specific etaMin, etaMax and ChiMax can be passed in. - * @param eulers - * @param refDir - * @param deg2Rad - * @return - */ - Rgb computeIPFColor(double* eulers, double* refDir, bool degToRad) const; - /** * @brief Converts in input Quaternion into a version that is inside the fundamental zone. * diff --git a/Source/EbsdLib/LaueOps/MonoclinicOps.cpp b/Source/EbsdLib/LaueOps/MonoclinicOps.cpp index 4362272c..ec8f626b 100644 --- a/Source/EbsdLib/LaueOps/MonoclinicOps.cpp +++ b/Source/EbsdLib/LaueOps/MonoclinicOps.cpp @@ -46,6 +46,11 @@ #include "EbsdLib/Utilities/ComputeStereographicProjection.h" #include "EbsdLib/Utilities/EbsdStringUtils.hpp" #include "EbsdLib/Utilities/Fonts.hpp" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" +#include "EbsdLib/Utilities/GriddedColorKey.hpp" +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/PUCMColorKey.hpp" +#include "EbsdLib/Utilities/TSLColorKey.hpp" #ifdef EbsdLib_USE_PARALLEL_ALGORITHMS #include @@ -54,10 +59,30 @@ #endif using namespace ebsdlib; +namespace +{ +ebsdlib::IColorKey::Pointer keyForKind(ebsdlib::ColorKeyKind kind) +{ + static const auto k_TSL = std::make_shared(); + static const auto k_PUCM = std::make_shared("2"); + static const auto k_NH = std::make_shared(ebsdlib::FundamentalSectorGeometry::monoclinic()); + switch(kind) + { + case ebsdlib::ColorKeyKind::PUCM: + return k_PUCM; + case ebsdlib::ColorKeyKind::NolzeHielscher: + return k_NH; + case ebsdlib::ColorKeyKind::TSL: + break; + } + return k_TSL; +} +} // namespace + namespace Monoclinic { -constexpr std::array k_OdfNumBins = {72, 36, 72}; // Represents a 5Deg bin +constexpr std::array k_OdfNumBins = {72, 36, 72}; // Represents a 5Deg bin in homochoric space static const std::array k_OdfDimInitValue = {std::pow((0.7f * ((ebsdlib::constants::k_PiD)-std::sin((ebsdlib::constants::k_PiD)))), (1.0 / 3.0)), std::pow((0.75 * ((ebsdlib::constants::k_PiOver2D)-std::sin((ebsdlib::constants::k_PiOver2D)))), (1.0 / 3.0)), @@ -455,14 +480,12 @@ class GenerateSphereCoordsImpl void generate(size_t start, size_t end) const { - ebsdlib::Matrix3X3D gTranspose; ebsdlib::Matrix3X1D direction(0.0, 0.0, 0.0); for(size_t i = start; i < end; ++i) { - ebsdlib::Matrix3X3D g(EulerDType(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)).toOrientationMatrix().data()); - - gTranspose = g.transpose(); + EulerDType euler(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)); + ebsdlib::Matrix3X3D gTranspose = euler.toOrientationMatrix().toGMatrix().transpose(); // ----------------------------------------------------------------------------- // 001 Family @@ -506,7 +529,8 @@ class GenerateSphereCoordsImpl } // namespace Monoclinic // ----------------------------------------------------------------------------- -void MonoclinicOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111) const +void MonoclinicOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111, + ebsdlib::HexConvention conv) const { size_t nOrientations = eulers->getNumberOfTuples(); @@ -546,17 +570,17 @@ bool MonoclinicOps::inUnitTriangle(double eta, double chi) const } // ----------------------------------------------------------------------------- -ebsdlib::Rgb MonoclinicOps::generateIPFColor(double* eulers, double* refDir, bool degToRad) const +ebsdlib::Rgb MonoclinicOps::generateIPFColor(double* eulers, double* refDir, bool degToRad, ebsdlib::ColorKeyKind kind) const { - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- -ebsdlib::Rgb MonoclinicOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad) const +ebsdlib::Rgb MonoclinicOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad, ebsdlib::ColorKeyKind kind) const { double eulers[3] = {phi1, phi, phi2}; double refDir[3] = {refDir0, refDir1, refDir2}; - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- @@ -581,7 +605,7 @@ ebsdlib::Rgb MonoclinicOps::generateRodriguesColor(double r1, double r2, double } // ----------------------------------------------------------------------------- -std::array MonoclinicOps::getDefaultPoleFigureNames() const +std::array MonoclinicOps::getDefaultPoleFigureNames(ebsdlib::HexConvention conv) const { return {"<001>", "<100>", "<010>"}; } @@ -745,7 +769,7 @@ std::vector MonoclinicOps::generatePoleFigure( namespace { // ----------------------------------------------------------------------------- -ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const MonoclinicOps* ops, int imageDim, bool generateEntirePlane) +ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const MonoclinicOps* ops, int imageDim, bool generateEntirePlane, const ebsdlib::IColorKey* key) { std::vector dims = {4ULL}; // ARGB std::string arrayName = EbsdStringUtils::replace(ops->getSymmetryName(), "/", "_"); @@ -781,7 +805,7 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const MonoclinicOps* ops, int i else { auto sphericalCoords = stereographic::utils::StereoToSpherical(x, y).normalize(); - color = ops->generateIPFColor(k_Orientation.data(), sphericalCoords.data(), false); + color = ops->computeIPFColor(k_Orientation.data(), sphericalCoords.data(), false, key); } pixelPtr[idx] = color; @@ -792,8 +816,39 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const MonoclinicOps* ops, int i } // ----------------------------------------------------------------------------- -void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, std::vector margins, std::array figureOrigin, std::array figureCenter, - bool drawFullCircle) +} // namespace + +// ----------------------------------------------------------------------------- +bool MonoclinicOps::mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const +{ + double xInc = 1.0 / static_cast(imageDim); + double yInc = 1.0 / static_cast(imageDim); + + double x = -1.0 + 2.0 * xPixel * xInc; + double y = -1.0 + 2.0 * yPixel * yInc; + + double sumSquares = (x * x) + (y * y); + if(sumSquares > 1.0) + { + return false; + } + + if(y < 0.0) + { + return false; + } + + auto sc = stereographic::utils::StereoToSpherical(x, y).normalize(); + + sphereDir[0] = static_cast(sc[0]); + sphereDir[1] = static_cast(sc[1]); + sphereDir[2] = static_cast(sc[2]); + return true; +} + +// ----------------------------------------------------------------------------- +void MonoclinicOps::drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, + std::array figureCenter, bool drawFullCircle, ebsdlib::HexConvention conv) const { int legendHeight = canvasDim - margins[0] - margins[2]; int legendWidth = canvasDim - margins[1] - margins[3]; @@ -904,21 +959,14 @@ void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float } } -} // namespace - // ----------------------------------------------------------------------------- -ebsdlib::UInt8ArrayType::Pointer MonoclinicOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane) const +ebsdlib::UInt8ArrayType::Pointer MonoclinicOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane, ebsdlib::HexConvention conv, ebsdlib::ColorKeyKind kind, bool gridded) const { - // Figure out the Legend Pixel Size + // Compute legend dimensions (same formula as annotateIPFImage uses) const float fontPtSize = static_cast(canvasDim) / 24.0f; - const std::vector margins = {fontPtSize * 3, // Top - static_cast(canvasDim / 7.0f), // Right - fontPtSize * 2, // Bottom - static_cast(canvasDim / 7.0f)}; // Left - - int legendHeight = canvasDim - margins[0] - margins[2]; - int legendWidth = canvasDim - margins[1] - margins[3]; - + const std::vector margins = {fontPtSize * 3, static_cast(canvasDim / 7.0f), fontPtSize * 2, static_cast(canvasDim / 7.0f)}; + int legendHeight = canvasDim - static_cast(margins[0]) - static_cast(margins[2]); + int legendWidth = canvasDim - static_cast(margins[1]) - static_cast(margins[3]); if(legendHeight > legendWidth) { legendHeight = legendWidth; @@ -927,67 +975,17 @@ ebsdlib::UInt8ArrayType::Pointer MonoclinicOps::generateIPFTriangleLegend(int ca { legendWidth = legendHeight; } - int pageHeight = canvasDim; - int pageWidth = canvasDim; - int halfWidth = legendWidth / 2; - int halfHeight = legendHeight / 2; - - std::array figureOrigin = {margins[3], margins[0] * 1.33F}; - // if(!generateEntirePlane) - // { - // figureOrigin[1] = 0.0F - legendHeight * 0.15F; - // } - std::array figureCenter = {figureOrigin[0] + halfWidth, figureOrigin[1] + halfHeight}; - - // Create the actual Legend which will come back as ARGB values - ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane); - - // Convert from ARGB to RGBA which is what canvas_itk wants - image = ebsdlib::ConvertColorOrder(image.get(), legendHeight); - - // We need to mirror across the X Axis because the image was drawn with +Y pointing down - image = ebsdlib::MirrorImage(image.get(), legendHeight); - - // Create a 2D Canvas to draw into now that the Legend is in the proper form - canvas_ity::canvas context(pageWidth, pageHeight); - - std::vector latoBold = ebsdlib::fonts::GetLatoBold(); - std::vector latoRegular = ebsdlib::fonts::GetLatoRegular(); - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize); - context.set_color(canvas_ity::fill_style, 0.0f, 0.0f, 0.0f, 1.0f); - canvas_ity::baseline_style const baselines[] = {canvas_ity::alphabetic, canvas_ity::top, canvas_ity::middle, canvas_ity::bottom, canvas_ity::hanging, canvas_ity::ideographic}; - context.text_baseline = baselines[0]; - - // Fill the whole background with white - context.move_to(0.0f, 0.0f); - context.line_to(static_cast(pageWidth), 0.0f); - context.line_to(static_cast(pageWidth), static_cast(pageHeight)); - context.line_to(0.0f, static_cast(pageHeight)); - context.line_to(0.0f, 0.0f); - context.close_path(); - context.set_color(canvas_ity::fill_style, 1.0f, 1.0f, 1.0f, 1.0f); - context.fill(); - - // Draw the legend image onto the canvas at the correct spot. - context.draw_image(image->getPointer(0), legendWidth, legendHeight, legendWidth * image->getNumberOfComponents(), figureOrigin[0], figureOrigin[1], static_cast(legendWidth), - static_cast(legendHeight)); - // Draw Title of Legend - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize * 1.5); - ebsdlib::WriteText(context, getSymmetryName(), {margins[0], static_cast(fontPtSize * 1.5)}, fontPtSize * 1.5); - - context.set_font(latoRegular.data(), static_cast(latoRegular.size()), fontPtSize); - DrawFullCircleAnnotations(context, canvasDim, fontPtSize, margins, figureOrigin, figureCenter, generateEntirePlane); - - // Fetch the rendered RGBA pixels from the entire canvas. - ebsdlib::UInt8ArrayType::Pointer rgbaCanvasImage = ebsdlib::UInt8ArrayType::CreateArray(pageHeight * pageWidth, {4ULL}, "Triangle Legend", true); - // std::vector rgbaCanvasImage(static_cast(pageHeight * pageWidth * 4)); - context.get_image_data(rgbaCanvasImage->getPointer(0), pageWidth, pageHeight, pageWidth * 4, 0, 0); - - // Remove the Alpha channel from the final image - rgbaCanvasImage = ebsdlib::RemoveAlphaChannel(rgbaCanvasImage.get()); + // Generate the colored SST triangle image (ARGB) + ebsdlib::IColorKey::Pointer key = keyForKind(kind); + if(gridded) + { + key = std::make_shared(key, 1.0); + } + ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane, key.get()); - return rgbaCanvasImage; + // Annotate with title and Miller index labels + return annotateIPFImage(image, legendHeight, canvasDim, getSymmetryName(), generateEntirePlane, /*hasColorBar=*/false, ebsdlib::HexConvention::NotApplicable); } // ----------------------------------------------------------------------------- diff --git a/Source/EbsdLib/LaueOps/MonoclinicOps.h b/Source/EbsdLib/LaueOps/MonoclinicOps.h index 2fb39420..9b7ba27a 100644 --- a/Source/EbsdLib/LaueOps/MonoclinicOps.h +++ b/Source/EbsdLib/LaueOps/MonoclinicOps.h @@ -198,7 +198,8 @@ class EbsdLib_EXPORT MonoclinicOps : public LaueOps double getF1spt(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; double getF7(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; - void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3) const override; + void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3, + ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; /** * @brief * @param eta Optional input value only needed for the "Cubic" Laue classes @@ -212,7 +213,7 @@ class EbsdLib_EXPORT MonoclinicOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateIPFColor Generates an ARGB Color from a Euler Angle and Reference Direction @@ -225,7 +226,7 @@ class EbsdLib_EXPORT MonoclinicOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateRodriguesColor Generates an RGB Color from a Rodrigues Vector @@ -251,13 +252,19 @@ class EbsdLib_EXPORT MonoclinicOps : public LaueOps * @brief Returns the names for each of the three standard pole figures that are generated. For example *<001>, <011> and <111> for a cubic system */ - std::array getDefaultPoleFigureNames() const override; + std::array getDefaultPoleFigureNames(ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; /** * @brief generateStandardTriangle Generates an RGBA array that is a color "Standard" IPF Triangle Legend used for IPF Color Maps. * @return */ - ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane) const override; + ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane, ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable, + ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL, bool gridded = false) const override; + + bool mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const override; + + void drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, std::array figureCenter, + bool drawFullCircle, ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; /** * @brief Returns if the given Quaternion is within the Rodrigues Fundamental Zone (RFZ) diff --git a/Source/EbsdLib/LaueOps/OrthoRhombicOps.cpp b/Source/EbsdLib/LaueOps/OrthoRhombicOps.cpp index 58a49746..5e45fa0f 100644 --- a/Source/EbsdLib/LaueOps/OrthoRhombicOps.cpp +++ b/Source/EbsdLib/LaueOps/OrthoRhombicOps.cpp @@ -45,7 +45,12 @@ #include "EbsdLib/Utilities/ComputeStereographicProjection.h" #include "EbsdLib/Utilities/EbsdStringUtils.hpp" #include "EbsdLib/Utilities/Fonts.hpp" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" +#include "EbsdLib/Utilities/GriddedColorKey.hpp" +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/PUCMColorKey.hpp" #include "EbsdLib/Utilities/PoleFigureUtilities.h" +#include "EbsdLib/Utilities/TSLColorKey.hpp" #ifdef EbsdLib_USE_PARALLEL_ALGORITHMS #include @@ -56,9 +61,29 @@ #define EBSD_LIB_GENERATE_ENTIRE_CIRCLE using namespace ebsdlib; +namespace +{ +ebsdlib::IColorKey::Pointer keyForKind(ebsdlib::ColorKeyKind kind) +{ + static const auto k_TSL = std::make_shared(); + static const auto k_PUCM = std::make_shared("222"); + static const auto k_NH = std::make_shared(ebsdlib::FundamentalSectorGeometry::orthorhombic()); + switch(kind) + { + case ebsdlib::ColorKeyKind::PUCM: + return k_PUCM; + case ebsdlib::ColorKeyKind::NolzeHielscher: + return k_NH; + case ebsdlib::ColorKeyKind::TSL: + break; + } + return k_TSL; +} +} // namespace + namespace OrthoRhombic { -constexpr std::array k_OdfNumBins = {36, 36, 36}; // Represents a 5Deg bin +constexpr std::array k_OdfNumBins = {36, 36, 36}; // Represents a 5Deg bin in homochoric space static const std::array k_OdfDimInitValue = {std::pow((0.75 * ((ebsdlib::constants::k_PiOver2D)-std::sin((ebsdlib::constants::k_PiOver2D)))), (1.0 / 3.0)), std::pow((0.75 * ((ebsdlib::constants::k_PiOver2D)-std::sin((ebsdlib::constants::k_PiOver2D)))), (1.0 / 3.0)), @@ -465,14 +490,12 @@ class GenerateSphereCoordsImpl void generate(size_t start, size_t end) const { - ebsdlib::Matrix3X3D gTranspose; ebsdlib::Matrix3X1D direction(0.0, 0.0, 0.0); for(size_t i = start; i < end; ++i) { - ebsdlib::Matrix3X3D g(EulerDType(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)).toOrientationMatrix().data()); - - gTranspose = g.transpose(); + EulerDType euler(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)); + ebsdlib::Matrix3X3D gTranspose = euler.toOrientationMatrix().toGMatrix().transpose(); // ----------------------------------------------------------------------------- // 001 Family @@ -516,7 +539,8 @@ class GenerateSphereCoordsImpl } // namespace OrthoRhombic // ----------------------------------------------------------------------------- -void OrthoRhombicOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111) const +void OrthoRhombicOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111, + ebsdlib::HexConvention conv) const { size_t nOrientations = eulers->getNumberOfTuples(); @@ -556,17 +580,17 @@ bool OrthoRhombicOps::inUnitTriangle(double eta, double chi) const } // ----------------------------------------------------------------------------- -ebsdlib::Rgb OrthoRhombicOps::generateIPFColor(double* eulers, double* refDir, bool degToRad) const +ebsdlib::Rgb OrthoRhombicOps::generateIPFColor(double* eulers, double* refDir, bool degToRad, ebsdlib::ColorKeyKind kind) const { - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- -ebsdlib::Rgb OrthoRhombicOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad) const +ebsdlib::Rgb OrthoRhombicOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad, ebsdlib::ColorKeyKind kind) const { double eulers[3] = {phi1, phi, phi2}; double refDir[3] = {refDir0, refDir1, refDir2}; - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- @@ -591,7 +615,7 @@ ebsdlib::Rgb OrthoRhombicOps::generateRodriguesColor(double r1, double r2, doubl } // ----------------------------------------------------------------------------- -std::array OrthoRhombicOps::getDefaultPoleFigureNames() const +std::array OrthoRhombicOps::getDefaultPoleFigureNames(ebsdlib::HexConvention conv) const { return {"<001>", "<100>", "<010>"}; } @@ -752,7 +776,7 @@ std::vector OrthoRhombicOps::generatePoleFigur namespace { // ----------------------------------------------------------------------------- -ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const OrthoRhombicOps* ops, int imageDim, bool generateEntirePlane) +ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const OrthoRhombicOps* ops, int imageDim, bool generateEntirePlane, const ebsdlib::IColorKey* key) { std::vector dims(1, 4); std::string arrayName = EbsdStringUtils::replace(ops->getSymmetryName(), "/", "_"); @@ -793,7 +817,7 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const OrthoRhombicOps* ops, int else { auto sphericalCoords = stereographic::utils::StereoToSpherical(x, y).normalize(); - color = ops->generateIPFColor(k_Orientation.data(), sphericalCoords.data(), false); + color = ops->computeIPFColor(k_Orientation.data(), sphericalCoords.data(), false, key); } pixelPtr[idx] = color; @@ -803,9 +827,50 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const OrthoRhombicOps* ops, int return image; } +} // namespace + +// ----------------------------------------------------------------------------- +bool OrthoRhombicOps::mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const +{ + double xInc = 1.0 / static_cast(imageDim); + double yInc = 1.0 / static_cast(imageDim); + + double x = -1.0 + 2.0 * xPixel * xInc; + double y = -1.0 + 2.0 * yPixel * yInc; + + double sumSquares = (x * x) + (y * y); + if(sumSquares > 1.0) + { + return false; + } + + if(y < 0.0 || x < 0.0) + { + return false; + } + + auto sc = stereographic::utils::StereoToSpherical(x, y).normalize(); + + sphereDir[0] = static_cast(sc[0]); + sphereDir[1] = static_cast(sc[1]); + sphereDir[2] = static_cast(sc[2]); + return true; +} + // ----------------------------------------------------------------------------- -void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, std::vector margins, std::array figureOrigin, std::array figureCenter, - bool drawFullCircle) +std::array OrthoRhombicOps::adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const +{ + if(!generateEntirePlane) + { + figureOrigin[0] = -margins[3]; + } + return figureOrigin; +} + +// ----------------------------------------------------------------------------- +void OrthoRhombicOps::drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, + std::array figureCenter, bool drawFullCircle, ebsdlib::HexConvention conv) const { int legendHeight = canvasDim - margins[0] - margins[2]; int legendWidth = canvasDim - margins[1] - margins[3]; @@ -890,20 +955,14 @@ void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float } } -} // namespace // ----------------------------------------------------------------------------- -ebsdlib::UInt8ArrayType::Pointer OrthoRhombicOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane) const +ebsdlib::UInt8ArrayType::Pointer OrthoRhombicOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane, ebsdlib::HexConvention conv, ebsdlib::ColorKeyKind kind, bool gridded) const { - // Figure out the Legend Pixel Size + // Compute legend dimensions (same formula as annotateIPFImage uses) const float fontPtSize = static_cast(canvasDim) / 24.0f; - const std::vector margins = {fontPtSize * 3, // Top - static_cast(canvasDim / 7.0f), // Right - fontPtSize * 2, // Bottom - static_cast(canvasDim / 7.0f)}; // Left - - int legendHeight = canvasDim - margins[0] - margins[2]; - int legendWidth = canvasDim - margins[1] - margins[3]; - + const std::vector margins = {fontPtSize * 3, static_cast(canvasDim / 7.0f), fontPtSize * 2, static_cast(canvasDim / 7.0f)}; + int legendHeight = canvasDim - static_cast(margins[0]) - static_cast(margins[2]); + int legendWidth = canvasDim - static_cast(margins[1]) - static_cast(margins[3]); if(legendHeight > legendWidth) { legendHeight = legendWidth; @@ -912,68 +971,17 @@ ebsdlib::UInt8ArrayType::Pointer OrthoRhombicOps::generateIPFTriangleLegend(int { legendWidth = legendHeight; } - int pageHeight = canvasDim; - int pageWidth = canvasDim; - int halfWidth = legendWidth / 2; - int halfHeight = legendHeight / 2; - std::array figureOrigin = {margins[3], margins[0] * 1.33F}; - if(!generateEntirePlane) + // Generate the colored SST triangle image (ARGB) + ebsdlib::IColorKey::Pointer key = keyForKind(kind); + if(gridded) { - figureOrigin[0] = -margins[3]; - // figureOrigin[1] = 0.0F - legendHeight * 0.15F; + key = std::make_shared(key, 1.0); } - std::array figureCenter = {figureOrigin[0] + halfWidth, figureOrigin[1] + halfHeight}; - - // Create the actual Legend which will come back as ARGB values - ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane); - - // Convert from ARGB to RGBA which is what canvas_itk wants - image = ebsdlib::ConvertColorOrder(image.get(), legendHeight); - - // We need to mirror across the X Axis because the image was drawn with +Y pointing down - image = ebsdlib::MirrorImage(image.get(), legendHeight); - - // Create a 2D Canvas to draw into now that the Legend is in the proper form - canvas_ity::canvas context(pageWidth, pageHeight); - - std::vector latoBold = ebsdlib::fonts::GetLatoBold(); - std::vector latoRegular = ebsdlib::fonts::GetLatoRegular(); - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize); - context.set_color(canvas_ity::fill_style, 0.0f, 0.0f, 0.0f, 1.0f); - canvas_ity::baseline_style const baselines[] = {canvas_ity::alphabetic, canvas_ity::top, canvas_ity::middle, canvas_ity::bottom, canvas_ity::hanging, canvas_ity::ideographic}; - context.text_baseline = baselines[0]; - - // Fill the whole background with white - context.move_to(0.0f, 0.0f); - context.line_to(static_cast(pageWidth), 0.0f); - context.line_to(static_cast(pageWidth), static_cast(pageHeight)); - context.line_to(0.0f, static_cast(pageHeight)); - context.line_to(0.0f, 0.0f); - context.close_path(); - context.set_color(canvas_ity::fill_style, 1.0f, 1.0f, 1.0f, 1.0f); - context.fill(); - - // Draw the legend image onto the canvas at the correct spot. - context.draw_image(image->getPointer(0), legendWidth, legendHeight, legendWidth * image->getNumberOfComponents(), figureOrigin[0], figureOrigin[1], static_cast(legendWidth), - static_cast(legendHeight)); - - // Draw Title of Legend - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize * 1.5); - ebsdlib::WriteText(context, getSymmetryName(), {margins[0], static_cast(fontPtSize * 1.5)}, fontPtSize * 1.5); - - context.set_font(latoRegular.data(), static_cast(latoRegular.size()), fontPtSize); - DrawFullCircleAnnotations(context, canvasDim, fontPtSize, margins, figureOrigin, figureCenter, generateEntirePlane); - - // Fetch the rendered RGBA pixels from the entire canvas. - ebsdlib::UInt8ArrayType::Pointer rgbaCanvasImage = ebsdlib::UInt8ArrayType::CreateArray(pageHeight * pageWidth, {4ULL}, "Triangle Legend", true); - // std::vector rgbaCanvasImage(static_cast(pageHeight * pageWidth * 4)); - context.get_image_data(rgbaCanvasImage->getPointer(0), pageWidth, pageHeight, pageWidth * 4, 0, 0); - - // Remove the Alpha channel from the final image - rgbaCanvasImage = ebsdlib::RemoveAlphaChannel(rgbaCanvasImage.get()); + ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane, key.get()); - return rgbaCanvasImage; + // Annotate with title and Miller index labels + return annotateIPFImage(image, legendHeight, canvasDim, getSymmetryName(), generateEntirePlane, /*hasColorBar=*/false, ebsdlib::HexConvention::NotApplicable); } // ----------------------------------------------------------------------------- diff --git a/Source/EbsdLib/LaueOps/OrthoRhombicOps.h b/Source/EbsdLib/LaueOps/OrthoRhombicOps.h index 16c37afa..75c30ea4 100644 --- a/Source/EbsdLib/LaueOps/OrthoRhombicOps.h +++ b/Source/EbsdLib/LaueOps/OrthoRhombicOps.h @@ -200,7 +200,8 @@ class EbsdLib_EXPORT OrthoRhombicOps : public LaueOps double getF1spt(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; double getF7(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; - void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3) const override; + void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3, + ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; /** * @brief @@ -215,7 +216,7 @@ class EbsdLib_EXPORT OrthoRhombicOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateIPFColor Generates an ARGB Color from a Euler Angle and Reference Direction @@ -228,7 +229,7 @@ class EbsdLib_EXPORT OrthoRhombicOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateRodriguesColor Generates an RGB Color from a Rodrigues Vector @@ -254,13 +255,22 @@ class EbsdLib_EXPORT OrthoRhombicOps : public LaueOps * @brief Returns the names for each of the three standard pole figures that are generated. For example *<001>, <011> and <111> for a cubic system */ - std::array getDefaultPoleFigureNames() const override; + std::array getDefaultPoleFigureNames(ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; /** * @brief generateStandardTriangle Generates an RGBA array that is a color "Standard" IPF Triangle Legend used for IPF Color Maps. * @return */ - ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane) const override; + ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane, ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable, + ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL, bool gridded = false) const override; + + bool mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const override; + + void drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, std::array figureCenter, + bool drawFullCircle, ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; + + std::array adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const override; /** * @brief Returns if the given Quaternion is within the Rodrigues Fundamental Zone (RFZ) diff --git a/Source/EbsdLib/LaueOps/TetragonalLowOps.cpp b/Source/EbsdLib/LaueOps/TetragonalLowOps.cpp index ec5629c8..d96f7f7d 100644 --- a/Source/EbsdLib/LaueOps/TetragonalLowOps.cpp +++ b/Source/EbsdLib/LaueOps/TetragonalLowOps.cpp @@ -45,7 +45,12 @@ #include "EbsdLib/Utilities/ComputeStereographicProjection.h" #include "EbsdLib/Utilities/EbsdStringUtils.hpp" #include "EbsdLib/Utilities/Fonts.hpp" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" +#include "EbsdLib/Utilities/GriddedColorKey.hpp" +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/PUCMColorKey.hpp" #include "EbsdLib/Utilities/PoleFigureUtilities.h" +#include "EbsdLib/Utilities/TSLColorKey.hpp" #ifdef EbsdLib_USE_PARALLEL_ALGORITHMS #include @@ -54,9 +59,29 @@ #endif using namespace ebsdlib; +namespace +{ +ebsdlib::IColorKey::Pointer keyForKind(ebsdlib::ColorKeyKind kind) +{ + static const auto k_TSL = std::make_shared(); + static const auto k_PUCM = std::make_shared("4"); + static const auto k_NH = std::make_shared(ebsdlib::FundamentalSectorGeometry::tetragonalLow()); + switch(kind) + { + case ebsdlib::ColorKeyKind::PUCM: + return k_PUCM; + case ebsdlib::ColorKeyKind::NolzeHielscher: + return k_NH; + case ebsdlib::ColorKeyKind::TSL: + break; + } + return k_TSL; +} +} // namespace + namespace TetragonalLow { -constexpr std::array k_OdfNumBins = {72, 72, 18}; // Represents a 5Deg bin +constexpr std::array k_OdfNumBins = {72, 72, 18}; // Represents a 5Deg bin in homochoric space static const std::array k_OdfDimInitValue = {std::pow((0.75 * ((ebsdlib::constants::k_PiD)-std::sin((ebsdlib::constants::k_PiD)))), (1.0 / 3.0)), std::pow((0.75 * ((ebsdlib::constants::k_PiD)-std::sin((ebsdlib::constants::k_PiD)))), (1.0 / 3.0)), @@ -65,8 +90,8 @@ static const std::array k_OdfDimStepValue = {k_OdfDimInitValue[0] / s k_OdfDimInitValue[2] / static_cast(k_OdfNumBins[2] / 2)}; constexpr int k_SymSize0 = 2; -constexpr int k_SymSize1 = 2; -constexpr int k_SymSize2 = 2; +constexpr int k_SymSize1 = 4; +constexpr int k_SymSize2 = 4; constexpr size_t k_OdfSize = 93312; constexpr size_t k_MdfSize = 93312; @@ -464,17 +489,15 @@ class GenerateSphereCoordsImpl void generate(size_t start, size_t end) const { - ebsdlib::Matrix3X3D gTranspose; ebsdlib::Matrix3X1D direction(0.0, 0.0, 0.0); for(size_t i = start; i < end; ++i) { - ebsdlib::Matrix3X3D g(EulerDType(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)).toOrientationMatrix().data()); - - gTranspose = g.transpose(); + EulerDType euler(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)); + ebsdlib::Matrix3X3D gTranspose = euler.toOrientationMatrix().toGMatrix().transpose(); // ----------------------------------------------------------------------------- - // 001 Family + // <001> (single c-axis direction, k_SymSize0 = 2 = 1 dir + antipode) direction[0] = 0.0; direction[1] = 0.0; direction[2] = 1.0; @@ -484,24 +507,30 @@ class GenerateSphereCoordsImpl [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 // ----------------------------------------------------------------------------- - // 011 Family + // <100> family under 4-fold rotation about c: (1,0,0) and (0,1,0) plus antipodes (4 poles total) direction[0] = 1.0; direction[1] = 0.0; direction[2] = 0.0; - (gTranspose * direction).copyInto(m_xyz011->getPointer(i * 6)); - std::transform(m_xyz011->getPointer(i * 6), m_xyz011->getPointer(i * 6 + 3), - m_xyz011->getPointer(i * 6 + 3), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 - - // ----------------------------------------------------------------------------- - // 111 Family + (gTranspose * direction).copyInto(m_xyz011->getPointer(i * 12)); + std::transform(m_xyz011->getPointer(i * 12), m_xyz011->getPointer(i * 12 + 3), m_xyz011->getPointer(i * 12 + 3), [](float value) { return value * -1.0F; }); direction[0] = 0.0; direction[1] = 1.0; - direction[2] = 0; - (gTranspose * direction).copyInto(m_xyz111->getPointer(i * 6)); - std::transform(m_xyz111->getPointer(i * 6), m_xyz111->getPointer(i * 6 + 3), - m_xyz111->getPointer(i * 6 + 3), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 + direction[2] = 0.0; + (gTranspose * direction).copyInto(m_xyz011->getPointer(i * 12 + 6)); + std::transform(m_xyz011->getPointer(i * 12 + 6), m_xyz011->getPointer(i * 12 + 9), m_xyz011->getPointer(i * 12 + 9), [](float value) { return value * -1.0F; }); + + // ----------------------------------------------------------------------------- + // <110> family under 4-fold: (1,1,0)/√2 and (-1,1,0)/√2 plus antipodes (4 poles total) + direction[0] = ebsdlib::constants::k_1OverRoot2D; + direction[1] = ebsdlib::constants::k_1OverRoot2D; + direction[2] = 0.0; + (gTranspose * direction).copyInto(m_xyz111->getPointer(i * 12)); + std::transform(m_xyz111->getPointer(i * 12), m_xyz111->getPointer(i * 12 + 3), m_xyz111->getPointer(i * 12 + 3), [](float value) { return value * -1.0F; }); + direction[0] = -ebsdlib::constants::k_1OverRoot2D; + direction[1] = ebsdlib::constants::k_1OverRoot2D; + direction[2] = 0.0; + (gTranspose * direction).copyInto(m_xyz111->getPointer(i * 12 + 6)); + std::transform(m_xyz111->getPointer(i * 12 + 6), m_xyz111->getPointer(i * 12 + 9), m_xyz111->getPointer(i * 12 + 9), [](float value) { return value * -1.0F; }); } } @@ -515,7 +544,8 @@ class GenerateSphereCoordsImpl } // namespace TetragonalLow // ----------------------------------------------------------------------------- -void TetragonalLowOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111) const +void TetragonalLowOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111, + ebsdlib::HexConvention conv) const { size_t nOrientations = eulers->getNumberOfTuples(); @@ -555,17 +585,17 @@ bool TetragonalLowOps::inUnitTriangle(double eta, double chi) const } // ----------------------------------------------------------------------------- -ebsdlib::Rgb TetragonalLowOps::generateIPFColor(double* eulers, double* refDir, bool degToRad) const +ebsdlib::Rgb TetragonalLowOps::generateIPFColor(double* eulers, double* refDir, bool degToRad, ebsdlib::ColorKeyKind kind) const { - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- -ebsdlib::Rgb TetragonalLowOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad) const +ebsdlib::Rgb TetragonalLowOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad, ebsdlib::ColorKeyKind kind) const { double eulers[3] = {phi1, phi, phi2}; double refDir[3] = {refDir0, refDir1, refDir2}; - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- @@ -590,9 +620,9 @@ ebsdlib::Rgb TetragonalLowOps::generateRodriguesColor(double r1, double r2, doub } // ----------------------------------------------------------------------------- -std::array TetragonalLowOps::getDefaultPoleFigureNames() const +std::array TetragonalLowOps::getDefaultPoleFigureNames(ebsdlib::HexConvention conv) const { - return {"<001>", "<100>", "<010>"}; + return {"<001>", "<100>", "<110>"}; } // ----------------------------------------------------------------------------- @@ -753,7 +783,7 @@ std::vector TetragonalLowOps::generatePoleFigu namespace { -ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TetragonalLowOps* ops, int imageDim, bool generateEntirePlane) +ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TetragonalLowOps* ops, int imageDim, bool generateEntirePlane, const ebsdlib::IColorKey* key) { std::vector dims(1, 4); std::string arrayName = EbsdStringUtils::replace(ops->getSymmetryName(), "/", "_"); @@ -795,7 +825,7 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TetragonalLowOps* ops, in else { auto sphericalCoords = stereographic::utils::StereoToSpherical(x, y).normalize(); - color = ops->generateIPFColor(k_Orientation.data(), sphericalCoords.data(), false); + color = ops->computeIPFColor(k_Orientation.data(), sphericalCoords.data(), false, key); } pixelPtr[idx] = color; @@ -805,9 +835,50 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TetragonalLowOps* ops, in return image; } +} // namespace + // ----------------------------------------------------------------------------- -void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, std::vector margins, std::array figureOrigin, std::array figureCenter, - bool drawFullCircle) +bool TetragonalLowOps::mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const +{ + double xInc = 1.0 / static_cast(imageDim); + double yInc = 1.0 / static_cast(imageDim); + + double x = -1.0 + 2.0 * xPixel * xInc; + double y = -1.0 + 2.0 * yPixel * yInc; + + double sumSquares = (x * x) + (y * y); + if(sumSquares > 1.0) + { + return false; + } + + if(y < 0.0 || x < 0.0) + { + return false; + } + + auto sc = stereographic::utils::StereoToSpherical(x, y).normalize(); + + sphereDir[0] = static_cast(sc[0]); + sphereDir[1] = static_cast(sc[1]); + sphereDir[2] = static_cast(sc[2]); + return true; +} + +// ----------------------------------------------------------------------------- +std::array TetragonalLowOps::adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const +{ + if(!generateEntirePlane) + { + figureOrigin[0] = -margins[3]; + } + return figureOrigin; +} + +// ----------------------------------------------------------------------------- +void TetragonalLowOps::drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, + std::array figureCenter, bool drawFullCircle, ebsdlib::HexConvention conv) const { int legendHeight = canvasDim - margins[0] - margins[2]; int legendWidth = canvasDim - margins[1] - margins[3]; @@ -918,21 +989,14 @@ void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float } } -} // namespace - // ----------------------------------------------------------------------------- -ebsdlib::UInt8ArrayType::Pointer TetragonalLowOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane) const +ebsdlib::UInt8ArrayType::Pointer TetragonalLowOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane, ebsdlib::HexConvention conv, ebsdlib::ColorKeyKind kind, bool gridded) const { - // Figure out the Legend Pixel Size + // Compute legend dimensions (same formula as annotateIPFImage uses) const float fontPtSize = static_cast(canvasDim) / 24.0f; - const std::vector margins = {fontPtSize * 3, // Top - static_cast(canvasDim / 7.0f), // Right - fontPtSize * 2, // Bottom - static_cast(canvasDim / 7.0f)}; // Left - - int legendHeight = canvasDim - margins[0] - margins[2]; - int legendWidth = canvasDim - margins[1] - margins[3]; - + const std::vector margins = {fontPtSize * 3, static_cast(canvasDim / 7.0f), fontPtSize * 2, static_cast(canvasDim / 7.0f)}; + int legendHeight = canvasDim - static_cast(margins[0]) - static_cast(margins[2]); + int legendWidth = canvasDim - static_cast(margins[1]) - static_cast(margins[3]); if(legendHeight > legendWidth) { legendHeight = legendWidth; @@ -941,68 +1005,17 @@ ebsdlib::UInt8ArrayType::Pointer TetragonalLowOps::generateIPFTriangleLegend(int { legendWidth = legendHeight; } - int pageHeight = canvasDim; - int pageWidth = canvasDim; - int halfWidth = legendWidth / 2; - int halfHeight = legendHeight / 2; - std::array figureOrigin = {margins[3], margins[0] * 1.33F}; - if(!generateEntirePlane) + // Generate the colored SST triangle image (ARGB) + ebsdlib::IColorKey::Pointer key = keyForKind(kind); + if(gridded) { - figureOrigin[0] = -margins[3]; - // figureOrigin[1] = 0.0F - legendHeight * 0.15F; + key = std::make_shared(key, 1.0); } - std::array figureCenter = {figureOrigin[0] + halfWidth, figureOrigin[1] + halfHeight}; - - // Create the actual Legend which will come back as ARGB values - ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane); - - // Convert from ARGB to RGBA which is what canvas_itk wants - image = ebsdlib::ConvertColorOrder(image.get(), legendHeight); - - // We need to mirror across the X Axis because the image was drawn with +Y pointing down - image = ebsdlib::MirrorImage(image.get(), legendHeight); - - // Create a 2D Canvas to draw into now that the Legend is in the proper form - canvas_ity::canvas context(pageWidth, pageHeight); - - std::vector latoBold = ebsdlib::fonts::GetLatoBold(); - std::vector latoRegular = ebsdlib::fonts::GetLatoRegular(); - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize); - context.set_color(canvas_ity::fill_style, 0.0f, 0.0f, 0.0f, 1.0f); - canvas_ity::baseline_style const baselines[] = {canvas_ity::alphabetic, canvas_ity::top, canvas_ity::middle, canvas_ity::bottom, canvas_ity::hanging, canvas_ity::ideographic}; - context.text_baseline = baselines[0]; - - // Fill the whole background with white - context.move_to(0.0f, 0.0f); - context.line_to(static_cast(pageWidth), 0.0f); - context.line_to(static_cast(pageWidth), static_cast(pageHeight)); - context.line_to(0.0f, static_cast(pageHeight)); - context.line_to(0.0f, 0.0f); - context.close_path(); - context.set_color(canvas_ity::fill_style, 1.0f, 1.0f, 1.0f, 1.0f); - context.fill(); - - // Draw the legend image onto the canvas at the correct spot. - context.draw_image(image->getPointer(0), legendWidth, legendHeight, legendWidth * image->getNumberOfComponents(), figureOrigin[0], figureOrigin[1], static_cast(legendWidth), - static_cast(legendHeight)); - - // Draw Title of Legend - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize * 1.5); - ebsdlib::WriteText(context, getSymmetryName(), {margins[0], static_cast(fontPtSize * 1.5)}, fontPtSize * 1.5); - - context.set_font(latoRegular.data(), static_cast(latoRegular.size()), fontPtSize); - DrawFullCircleAnnotations(context, canvasDim, fontPtSize, margins, figureOrigin, figureCenter, generateEntirePlane); - - // Fetch the rendered RGBA pixels from the entire canvas. - ebsdlib::UInt8ArrayType::Pointer rgbaCanvasImage = ebsdlib::UInt8ArrayType::CreateArray(pageHeight * pageWidth, {4ULL}, "Triangle Legend", true); - // std::vector rgbaCanvasImage(static_cast(pageHeight * pageWidth * 4)); - context.get_image_data(rgbaCanvasImage->getPointer(0), pageWidth, pageHeight, pageWidth * 4, 0, 0); - - // Remove the Alpha channel from the final image - rgbaCanvasImage = ebsdlib::RemoveAlphaChannel(rgbaCanvasImage.get()); + ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane, key.get()); - return rgbaCanvasImage; + // Annotate with title and Miller index labels + return annotateIPFImage(image, legendHeight, canvasDim, getSymmetryName(), generateEntirePlane, /*hasColorBar=*/false, ebsdlib::HexConvention::NotApplicable); } // ----------------------------------------------------------------------------- diff --git a/Source/EbsdLib/LaueOps/TetragonalLowOps.h b/Source/EbsdLib/LaueOps/TetragonalLowOps.h index 371ba778..7a7f3945 100644 --- a/Source/EbsdLib/LaueOps/TetragonalLowOps.h +++ b/Source/EbsdLib/LaueOps/TetragonalLowOps.h @@ -200,7 +200,8 @@ class EbsdLib_EXPORT TetragonalLowOps : public LaueOps double getF1spt(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; double getF7(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; - void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3) const override; + void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3, + ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; /** * @brief @@ -215,7 +216,7 @@ class EbsdLib_EXPORT TetragonalLowOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateIPFColor Generates an ARGB Color from a Euler Angle and Reference Direction @@ -228,7 +229,7 @@ class EbsdLib_EXPORT TetragonalLowOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateRodriguesColor Generates an RGB Color from a Rodrigues Vector @@ -254,13 +255,22 @@ class EbsdLib_EXPORT TetragonalLowOps : public LaueOps * @brief Returns the names for each of the three standard pole figures that are generated. For example *<001>, <011> and <111> for a cubic system */ - std::array getDefaultPoleFigureNames() const override; + std::array getDefaultPoleFigureNames(ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; /** * @brief generateStandardTriangle Generates an RGBA array that is a color "Standard" IPF Triangle Legend used for IPF Color Maps. * @return */ - ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane) const override; + ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane, ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable, + ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL, bool gridded = false) const override; + + bool mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const override; + + void drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, std::array figureCenter, + bool drawFullCircle, ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; + + std::array adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const override; /** * @brief Returns if the given Quaternion is within the Rodrigues Fundamental Zone (RFZ) diff --git a/Source/EbsdLib/LaueOps/TetragonalOps.cpp b/Source/EbsdLib/LaueOps/TetragonalOps.cpp index a0bf0eb8..f1205478 100644 --- a/Source/EbsdLib/LaueOps/TetragonalOps.cpp +++ b/Source/EbsdLib/LaueOps/TetragonalOps.cpp @@ -46,7 +46,12 @@ #include "EbsdLib/Utilities/ComputeStereographicProjection.h" #include "EbsdLib/Utilities/EbsdStringUtils.hpp" #include "EbsdLib/Utilities/Fonts.hpp" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" +#include "EbsdLib/Utilities/GriddedColorKey.hpp" +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/PUCMColorKey.hpp" #include "EbsdLib/Utilities/PoleFigureUtilities.h" +#include "EbsdLib/Utilities/TSLColorKey.hpp" #ifdef EbsdLib_USE_PARALLEL_ALGORITHMS #include @@ -55,9 +60,29 @@ #endif using namespace ebsdlib; +namespace +{ +ebsdlib::IColorKey::Pointer keyForKind(ebsdlib::ColorKeyKind kind) +{ + static const auto k_TSL = std::make_shared(); + static const auto k_PUCM = std::make_shared("422"); + static const auto k_NH = std::make_shared(ebsdlib::FundamentalSectorGeometry::tetragonalHigh()); + switch(kind) + { + case ebsdlib::ColorKeyKind::PUCM: + return k_PUCM; + case ebsdlib::ColorKeyKind::NolzeHielscher: + return k_NH; + case ebsdlib::ColorKeyKind::TSL: + break; + } + return k_TSL; +} +} // namespace + namespace TetragonalHigh { -constexpr std::array k_OdfNumBins = {36, 36, 18}; // Represents a 5Deg bin +constexpr std::array k_OdfNumBins = {36, 36, 18}; // Represents a 5Deg bin in homochoric space static const std::array k_OdfDimInitValue = {std::pow((0.75 * ((ebsdlib::constants::k_PiOver2D)-std::sin((ebsdlib::constants::k_PiOver2D)))), (1.0 / 3.0)), std::pow((0.75 * ((ebsdlib::constants::k_PiOver2D)-std::sin((ebsdlib::constants::k_PiOver2D)))), (1.0 / 3.0)), @@ -491,15 +516,13 @@ class GenerateSphereCoordsImpl void generate(size_t start, size_t end) const { - ebsdlib::Matrix3X3D gTranspose; ebsdlib::Matrix3X1D direction(0.0, 0.0, 0.0); // Generate all the Coordinates for(size_t i = start; i < end; ++i) { - ebsdlib::Matrix3X3D g(EulerDType(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)).toOrientationMatrix().data()); - - gTranspose = g.transpose(); + EulerDType euler(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)); + ebsdlib::Matrix3X3D gTranspose = euler.toOrientationMatrix().toGMatrix().transpose(); // ----------------------------------------------------------------------------- // 001 Family @@ -556,7 +579,8 @@ class GenerateSphereCoordsImpl }; } // namespace TetragonalHigh // ----------------------------------------------------------------------------- -void TetragonalOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111) const +void TetragonalOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111, + ebsdlib::HexConvention conv) const { size_t nOrientations = eulers->getNumberOfTuples(); @@ -602,17 +626,17 @@ bool TetragonalOps::inUnitTriangle(double eta, double chi) const } // ----------------------------------------------------------------------------- -ebsdlib::Rgb TetragonalOps::generateIPFColor(double* eulers, double* refDir, bool degToRad) const +ebsdlib::Rgb TetragonalOps::generateIPFColor(double* eulers, double* refDir, bool degToRad, ebsdlib::ColorKeyKind kind) const { - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- -ebsdlib::Rgb TetragonalOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad) const +ebsdlib::Rgb TetragonalOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad, ebsdlib::ColorKeyKind kind) const { double eulers[3] = {phi1, phi, phi2}; double refDir[3] = {refDir0, refDir1, refDir2}; - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- @@ -637,7 +661,7 @@ ebsdlib::Rgb TetragonalOps::generateRodriguesColor(double r1, double r2, double } // ----------------------------------------------------------------------------- -std::array TetragonalOps::getDefaultPoleFigureNames() const +std::array TetragonalOps::getDefaultPoleFigureNames(ebsdlib::HexConvention conv) const { return {"<001>", "<100>", "<110>"}; } @@ -800,7 +824,7 @@ std::vector TetragonalOps::generatePoleFigure( namespace { -ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TetragonalOps* ops, int imageDim, bool generateEntirePlane) +ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TetragonalOps* ops, int imageDim, bool generateEntirePlane, const ebsdlib::IColorKey* key) { std::vector dims(1, 4); std::string arrayName = EbsdStringUtils::replace(ops->getSymmetryName(), "/", "_"); @@ -838,7 +862,7 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TetragonalOps* ops, int i else { auto sphericalCoords = stereographic::utils::StereoToSpherical(x, y).normalize(); - color = ops->generateIPFColor(k_Orientation.data(), sphericalCoords.data(), false); + color = ops->computeIPFColor(k_Orientation.data(), sphericalCoords.data(), false, key); } pixelPtr[idx] = color; @@ -848,9 +872,51 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TetragonalOps* ops, int i return image; } +} // namespace + +// ----------------------------------------------------------------------------- +bool TetragonalOps::mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const +{ + double xInc = 1.0 / static_cast(imageDim); + double yInc = 1.0 / static_cast(imageDim); + + double x = -1.0 + 2.0 * xPixel * xInc; + double y = -1.0 + 2.0 * yPixel * yInc; + + double sumSquares = (x * x) + (y * y); + if(sumSquares > 1.0) + { + return false; + } + + if(x < y || y < 0.0) + { + return false; + } + + auto sc = stereographic::utils::StereoToSpherical(x, y).normalize(); + + sphereDir[0] = static_cast(sc[0]); + sphereDir[1] = static_cast(sc[1]); + sphereDir[2] = static_cast(sc[2]); + return true; +} + +// ----------------------------------------------------------------------------- +std::array TetragonalOps::adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const +{ + if(!generateEntirePlane) + { + figureOrigin[0] = -margins[2]; + figureOrigin[1] = fontPtSize * 2.0F; + } + return figureOrigin; +} + // ----------------------------------------------------------------------------- -void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, std::vector margins, std::array figureOrigin, std::array figureCenter, - bool drawFullCircle) +void TetragonalOps::drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, + std::array figureCenter, bool drawFullCircle, ebsdlib::HexConvention conv) const { int legendHeight = canvasDim - margins[0] - margins[2]; int legendWidth = canvasDim - margins[1] - margins[3]; @@ -935,21 +1001,14 @@ void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float } } -} // namespace - // ----------------------------------------------------------------------------- -ebsdlib::UInt8ArrayType::Pointer TetragonalOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane) const +ebsdlib::UInt8ArrayType::Pointer TetragonalOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane, ebsdlib::HexConvention conv, ebsdlib::ColorKeyKind kind, bool gridded) const { - // Figure out the Legend Pixel Size + // Compute legend dimensions (same formula as annotateIPFImage uses) const float fontPtSize = static_cast(canvasDim) / 24.0f; - const std::vector margins = {fontPtSize * 3, // Top - static_cast(canvasDim / 7.0f), // Right - fontPtSize * 2, // Bottom - static_cast(canvasDim / 7.0f)}; // Left - - int legendHeight = canvasDim - margins[0] - margins[2]; - int legendWidth = canvasDim - margins[1] - margins[3]; - + const std::vector margins = {fontPtSize * 3, static_cast(canvasDim / 7.0f), fontPtSize * 2, static_cast(canvasDim / 7.0f)}; + int legendHeight = canvasDim - static_cast(margins[0]) - static_cast(margins[2]); + int legendWidth = canvasDim - static_cast(margins[1]) - static_cast(margins[3]); if(legendHeight > legendWidth) { legendHeight = legendWidth; @@ -958,68 +1017,17 @@ ebsdlib::UInt8ArrayType::Pointer TetragonalOps::generateIPFTriangleLegend(int ca { legendWidth = legendHeight; } - int pageHeight = canvasDim; - int pageWidth = canvasDim; - int halfWidth = legendWidth / 2; - int halfHeight = legendHeight / 2; - std::array figureOrigin = {margins[3], margins[0] * 1.33F}; - if(!generateEntirePlane) + // Generate the colored SST triangle image (ARGB) + ebsdlib::IColorKey::Pointer key = keyForKind(kind); + if(gridded) { - figureOrigin[0] = -margins[2]; - figureOrigin[1] = fontPtSize * 2.0F; + key = std::make_shared(key, 1.0); } - std::array figureCenter = {figureOrigin[0] + halfWidth, figureOrigin[1] + halfHeight}; - - // Create the actual Legend which will come back as ARGB values - ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane); - - // Convert from ARGB to RGBA which is what canvas_itk wants - image = ebsdlib::ConvertColorOrder(image.get(), legendHeight); - - // We need to mirror across the X Axis because the image was drawn with +Y pointing down - image = ebsdlib::MirrorImage(image.get(), legendHeight); - - // Create a 2D Canvas to draw into now that the Legend is in the proper form - canvas_ity::canvas context(pageWidth, pageHeight); - - std::vector latoBold = ebsdlib::fonts::GetLatoBold(); - std::vector latoRegular = ebsdlib::fonts::GetLatoRegular(); - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize); - context.set_color(canvas_ity::fill_style, 0.0f, 0.0f, 0.0f, 1.0f); - canvas_ity::baseline_style const baselines[] = {canvas_ity::alphabetic, canvas_ity::top, canvas_ity::middle, canvas_ity::bottom, canvas_ity::hanging, canvas_ity::ideographic}; - context.text_baseline = baselines[0]; - - // Fill the whole background with white - context.move_to(0.0f, 0.0f); - context.line_to(static_cast(pageWidth), 0.0f); - context.line_to(static_cast(pageWidth), static_cast(pageHeight)); - context.line_to(0.0f, static_cast(pageHeight)); - context.line_to(0.0f, 0.0f); - context.close_path(); - context.set_color(canvas_ity::fill_style, 1.0f, 1.0f, 1.0f, 1.0f); - context.fill(); - - // Draw the legend image onto the canvas at the correct spot. - context.draw_image(image->getPointer(0), legendWidth, legendHeight, legendWidth * image->getNumberOfComponents(), figureOrigin[0], figureOrigin[1], static_cast(legendWidth), - static_cast(legendHeight)); - - // Draw Title of Legend - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize * 1.5); - ebsdlib::WriteText(context, getSymmetryName(), {margins[0], static_cast(fontPtSize * 1.5)}, fontPtSize * 1.5); - - context.set_font(latoRegular.data(), static_cast(latoRegular.size()), fontPtSize); - DrawFullCircleAnnotations(context, canvasDim, fontPtSize, margins, figureOrigin, figureCenter, generateEntirePlane); - - // Fetch the rendered RGBA pixels from the entire canvas. - ebsdlib::UInt8ArrayType::Pointer rgbaCanvasImage = ebsdlib::UInt8ArrayType::CreateArray(pageHeight * pageWidth, {4ULL}, "Triangle Legend", true); - // std::vector rgbaCanvasImage(static_cast(pageHeight * pageWidth * 4)); - context.get_image_data(rgbaCanvasImage->getPointer(0), pageWidth, pageHeight, pageWidth * 4, 0, 0); - - // Remove the Alpha channel from the final image - rgbaCanvasImage = ebsdlib::RemoveAlphaChannel(rgbaCanvasImage.get()); + ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane, key.get()); - return rgbaCanvasImage; + // Annotate with title and Miller index labels + return annotateIPFImage(image, legendHeight, canvasDim, getSymmetryName(), generateEntirePlane, /*hasColorBar=*/false, ebsdlib::HexConvention::NotApplicable); } // ----------------------------------------------------------------------------- diff --git a/Source/EbsdLib/LaueOps/TetragonalOps.h b/Source/EbsdLib/LaueOps/TetragonalOps.h index fde56afc..24e8a73a 100644 --- a/Source/EbsdLib/LaueOps/TetragonalOps.h +++ b/Source/EbsdLib/LaueOps/TetragonalOps.h @@ -200,7 +200,8 @@ class EbsdLib_EXPORT TetragonalOps : public LaueOps double getF1spt(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; double getF7(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; - void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3) const override; + void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3, + ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; /** * @brief @@ -215,7 +216,7 @@ class EbsdLib_EXPORT TetragonalOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateIPFColor Generates an ARGB Color from a Euler Angle and Reference Direction @@ -228,7 +229,7 @@ class EbsdLib_EXPORT TetragonalOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateRodriguesColor Generates an RGB Color from a Rodrigues Vector @@ -254,13 +255,22 @@ class EbsdLib_EXPORT TetragonalOps : public LaueOps * @brief Returns the names for each of the three standard pole figures that are generated. For example *<001>, <011> and <111> for a cubic system */ - std::array getDefaultPoleFigureNames() const override; + std::array getDefaultPoleFigureNames(ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; /** * @brief generateStandardTriangle Generates an RGBA array that is a color "Standard" IPF Triangle Legend used for IPF Color Maps. * @return */ - ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane) const override; + ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane, ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable, + ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL, bool gridded = false) const override; + + bool mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const override; + + void drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, std::array figureCenter, + bool drawFullCircle, ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; + + std::array adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const override; /** * @brief Returns if the given Quaternion is within the Rodrigues Fundamental Zone (RFZ) diff --git a/Source/EbsdLib/LaueOps/TriclinicOps.cpp b/Source/EbsdLib/LaueOps/TriclinicOps.cpp index a423061c..b9376c10 100644 --- a/Source/EbsdLib/LaueOps/TriclinicOps.cpp +++ b/Source/EbsdLib/LaueOps/TriclinicOps.cpp @@ -46,7 +46,12 @@ #include "EbsdLib/Utilities/ComputeStereographicProjection.h" #include "EbsdLib/Utilities/EbsdStringUtils.hpp" #include "EbsdLib/Utilities/Fonts.hpp" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" +#include "EbsdLib/Utilities/GriddedColorKey.hpp" +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/PUCMColorKey.hpp" #include "EbsdLib/Utilities/PoleFigureUtilities.h" +#include "EbsdLib/Utilities/TSLColorKey.hpp" #ifdef EbsdLib_USE_PARALLEL_ALGORITHMS #include @@ -57,9 +62,29 @@ #endif using namespace ebsdlib; +namespace +{ +ebsdlib::IColorKey::Pointer keyForKind(ebsdlib::ColorKeyKind kind) +{ + static const auto k_TSL = std::make_shared(); + static const auto k_PUCM = std::make_shared("1"); + static const auto k_NH = std::make_shared(ebsdlib::FundamentalSectorGeometry::triclinic()); + switch(kind) + { + case ebsdlib::ColorKeyKind::PUCM: + return k_PUCM; + case ebsdlib::ColorKeyKind::NolzeHielscher: + return k_NH; + case ebsdlib::ColorKeyKind::TSL: + break; + } + return k_TSL; +} +} // namespace + namespace Triclinic { -constexpr std::array k_OdfNumBins = {72, 72, 72}; // Represents a 5Deg bin +constexpr std::array k_OdfNumBins = {72, 72, 72}; // Represents a 5Deg bin in homochoric space static const std::array k_OdfDimInitValue = {std::pow((0.75 * ((ebsdlib::constants::k_PiD)-std::sin((ebsdlib::constants::k_PiD)))), (1.0 / 3.0)), std::pow((0.75 * ((ebsdlib::constants::k_PiD)-std::sin((ebsdlib::constants::k_PiD)))), (1.0 / 3.0)), @@ -445,15 +470,13 @@ class GenerateSphereCoordsImpl void generate(size_t start, size_t end) const { - ebsdlib::Matrix3X3D gTranspose; ebsdlib::Matrix3X1D direction(0.0, 0.0, 0.0); // Generate all the Coordinates for(size_t i = start; i < end; ++i) { - ebsdlib::Matrix3X3D g(EulerDType(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)).toOrientationMatrix().data()); - - gTranspose = g.transpose(); + EulerDType euler(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)); + ebsdlib::Matrix3X3D gTranspose = euler.toOrientationMatrix().toGMatrix().transpose(); // ----------------------------------------------------------------------------- // 001 Family @@ -497,7 +520,8 @@ class GenerateSphereCoordsImpl } // namespace TriclinicHigh // ----------------------------------------------------------------------------- -void TriclinicOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111) const +void TriclinicOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111, + ebsdlib::HexConvention conv) const { size_t nOrientations = eulers->getNumberOfTuples(); @@ -543,17 +567,17 @@ bool TriclinicOps::inUnitTriangle(double eta, double chi) const } // ----------------------------------------------------------------------------- -ebsdlib::Rgb TriclinicOps::generateIPFColor(double* eulers, double* refDir, bool degToRad) const +ebsdlib::Rgb TriclinicOps::generateIPFColor(double* eulers, double* refDir, bool degToRad, ebsdlib::ColorKeyKind kind) const { - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- -ebsdlib::Rgb TriclinicOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad) const +ebsdlib::Rgb TriclinicOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad, ebsdlib::ColorKeyKind kind) const { double eulers[3] = {phi1, phi, phi2}; double refDir[3] = {refDir0, refDir1, refDir2}; - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- @@ -578,7 +602,7 @@ ebsdlib::Rgb TriclinicOps::generateRodriguesColor(double r1, double r2, double r } // ----------------------------------------------------------------------------- -std::array TriclinicOps::getDefaultPoleFigureNames() const +std::array TriclinicOps::getDefaultPoleFigureNames(ebsdlib::HexConvention conv) const { return {"<001>", "<100>", "<010>"}; } @@ -740,7 +764,7 @@ std::vector TriclinicOps::generatePoleFigure(P namespace { // ----------------------------------------------------------------------------- -ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TriclinicOps* ops, int imageDim, bool generateEntirePlane) +ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TriclinicOps* ops, int imageDim, bool generateEntirePlane, const ebsdlib::IColorKey* key) { std::vector dims(1, 4); std::string arrayName = EbsdStringUtils::replace(ops->getSymmetryName(), "/", "_"); @@ -775,7 +799,7 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TriclinicOps* ops, int im else { auto sphericalCoords = stereographic::utils::StereoToSpherical(x, y).normalize(); - color = ops->generateIPFColor(k_Orientation.data(), sphericalCoords.data(), false); + color = ops->computeIPFColor(k_Orientation.data(), sphericalCoords.data(), false, key); } pixelPtr[idx] = color; @@ -786,8 +810,34 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TriclinicOps* ops, int im } // ----------------------------------------------------------------------------- -void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, std::vector margins, std::array figureOrigin, std::array figureCenter, - bool drawFullCircle) +} // namespace + +// ----------------------------------------------------------------------------- +bool TriclinicOps::mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const +{ + double xInc = 1.0 / static_cast(imageDim); + double yInc = 1.0 / static_cast(imageDim); + + double x = -1.0 + 2.0 * xPixel * xInc; + double y = -1.0 + 2.0 * yPixel * yInc; + + double sumSquares = (x * x) + (y * y); + if(sumSquares > 1.0) + { + return false; + } + + auto sc = stereographic::utils::StereoToSpherical(x, y).normalize(); + + sphereDir[0] = static_cast(sc[0]); + sphereDir[1] = static_cast(sc[1]); + sphereDir[2] = static_cast(sc[2]); + return true; +} + +// ----------------------------------------------------------------------------- +void TriclinicOps::drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, + std::array figureCenter, bool drawFullCircle, ebsdlib::HexConvention conv) const { int legendHeight = canvasDim - margins[0] - margins[2]; int legendWidth = canvasDim - margins[1] - margins[3]; @@ -887,20 +937,14 @@ void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float } } -} // namespace // ----------------------------------------------------------------------------- -ebsdlib::UInt8ArrayType::Pointer TriclinicOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane) const +ebsdlib::UInt8ArrayType::Pointer TriclinicOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane, ebsdlib::HexConvention conv, ebsdlib::ColorKeyKind kind, bool gridded) const { - // Figure out the Legend Pixel Size + // Compute legend dimensions (same formula as annotateIPFImage uses) const float fontPtSize = static_cast(canvasDim) / 24.0f; - const std::vector margins = {fontPtSize * 3, // Top - static_cast(canvasDim / 7.0f), // Right - fontPtSize * 2, // Bottom - static_cast(canvasDim / 7.0f)}; // Left - - int legendHeight = canvasDim - margins[0] - margins[2]; - int legendWidth = canvasDim - margins[1] - margins[3]; - + const std::vector margins = {fontPtSize * 3, static_cast(canvasDim / 7.0f), fontPtSize * 2, static_cast(canvasDim / 7.0f)}; + int legendHeight = canvasDim - static_cast(margins[0]) - static_cast(margins[2]); + int legendWidth = canvasDim - static_cast(margins[1]) - static_cast(margins[3]); if(legendHeight > legendWidth) { legendHeight = legendWidth; @@ -909,67 +953,17 @@ ebsdlib::UInt8ArrayType::Pointer TriclinicOps::generateIPFTriangleLegend(int can { legendWidth = legendHeight; } - int pageHeight = canvasDim; - int pageWidth = canvasDim; - int halfWidth = legendWidth / 2; - int halfHeight = legendHeight / 2; - std::array figureOrigin = {margins[3], margins[0] * 1.33F}; - // if(!generateEntirePlane) - // { - // figureOrigin[1] = 0.0F - legendHeight * 0.25F; - // } - std::array figureCenter = {figureOrigin[0] + halfWidth, figureOrigin[1] + halfHeight}; - - // Create the actual Legend which will come back as ARGB values - ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane); - - // Convert from ARGB to RGBA which is what canvas_itk wants - image = ebsdlib::ConvertColorOrder(image.get(), legendHeight); - - // We need to mirror across the X Axis because the image was drawn with +Y pointing down - image = ebsdlib::MirrorImage(image.get(), legendHeight); - - // Create a 2D Canvas to draw into now that the Legend is in the proper form - canvas_ity::canvas context(pageWidth, pageHeight); - - std::vector latoBold = ebsdlib::fonts::GetLatoBold(); - std::vector latoRegular = ebsdlib::fonts::GetLatoRegular(); - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize); - context.set_color(canvas_ity::fill_style, 0.0f, 0.0f, 0.0f, 1.0f); - canvas_ity::baseline_style const baselines[] = {canvas_ity::alphabetic, canvas_ity::top, canvas_ity::middle, canvas_ity::bottom, canvas_ity::hanging, canvas_ity::ideographic}; - context.text_baseline = baselines[0]; - - // Fill the whole background with white - context.move_to(0.0f, 0.0f); - context.line_to(static_cast(pageWidth), 0.0f); - context.line_to(static_cast(pageWidth), static_cast(pageHeight)); - context.line_to(0.0f, static_cast(pageHeight)); - context.line_to(0.0f, 0.0f); - context.close_path(); - context.set_color(canvas_ity::fill_style, 1.0f, 1.0f, 1.0f, 1.0f); - context.fill(); - - // Draw the legend image onto the canvas at the correct spot. - context.draw_image(image->getPointer(0), legendWidth, legendHeight, legendWidth * image->getNumberOfComponents(), figureOrigin[0], figureOrigin[1], static_cast(legendWidth), - static_cast(legendHeight)); - - // Draw Title of Legend - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize * 1.5); - ebsdlib::WriteText(context, getSymmetryName(), {margins[0], static_cast(fontPtSize * 1.5)}, fontPtSize * 1.5); - - context.set_font(latoRegular.data(), static_cast(latoRegular.size()), fontPtSize); - DrawFullCircleAnnotations(context, canvasDim, fontPtSize, margins, figureOrigin, figureCenter, generateEntirePlane); - - // Fetch the rendered RGBA pixels from the entire canvas. - ebsdlib::UInt8ArrayType::Pointer rgbaCanvasImage = ebsdlib::UInt8ArrayType::CreateArray(pageHeight * pageWidth, {4ULL}, "Triangle Legend", true); - // std::vector rgbaCanvasImage(static_cast(pageHeight * pageWidth * 4)); - context.get_image_data(rgbaCanvasImage->getPointer(0), pageWidth, pageHeight, pageWidth * 4, 0, 0); - - // Remove the Alpha channel from the final image - rgbaCanvasImage = ebsdlib::RemoveAlphaChannel(rgbaCanvasImage.get()); - - return rgbaCanvasImage; + // Generate the colored SST triangle image (ARGB) + ebsdlib::IColorKey::Pointer key = keyForKind(kind); + if(gridded) + { + key = std::make_shared(key, 1.0); + } + ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane, key.get()); + + // Annotate with title and Miller index labels + return annotateIPFImage(image, legendHeight, canvasDim, getSymmetryName(), generateEntirePlane, /*hasColorBar=*/false, ebsdlib::HexConvention::NotApplicable); } // ----------------------------------------------------------------------------- diff --git a/Source/EbsdLib/LaueOps/TriclinicOps.h b/Source/EbsdLib/LaueOps/TriclinicOps.h index 035758ff..4929aff8 100644 --- a/Source/EbsdLib/LaueOps/TriclinicOps.h +++ b/Source/EbsdLib/LaueOps/TriclinicOps.h @@ -200,7 +200,8 @@ class EbsdLib_EXPORT TriclinicOps : public LaueOps double getF1spt(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; double getF7(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; - void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3) const override; + void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3, + ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; /** * @brief @@ -215,7 +216,7 @@ class EbsdLib_EXPORT TriclinicOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateIPFColor Generates an ARGB Color from a Euler Angle and Reference Direction @@ -228,7 +229,7 @@ class EbsdLib_EXPORT TriclinicOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateRodriguesColor Generates an RGB Color from a Rodrigues Vector @@ -254,13 +255,19 @@ class EbsdLib_EXPORT TriclinicOps : public LaueOps * @brief Returns the names for each of the three standard pole figures that are generated. For example *<001>, <011> and <111> for a cubic system */ - std::array getDefaultPoleFigureNames() const override; + std::array getDefaultPoleFigureNames(ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; /** * @brief generateStandardTriangle Generates an RGBA array that is a color "Standard" IPF Triangle Legend used for IPF Color Maps. * @return */ - ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane) const override; + ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane, ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable, + ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL, bool gridded = false) const override; + + bool mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const override; + + void drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, std::array figureCenter, + bool drawFullCircle, ebsdlib::HexConvention conv = ebsdlib::HexConvention::NotApplicable) const override; /** * @brief Returns if the given Quaternion is within the Rodrigues Fundamental Zone (RFZ) diff --git a/Source/EbsdLib/LaueOps/TrigonalLowOps.cpp b/Source/EbsdLib/LaueOps/TrigonalLowOps.cpp index 0d4f1a7c..17e5ad39 100644 --- a/Source/EbsdLib/LaueOps/TrigonalLowOps.cpp +++ b/Source/EbsdLib/LaueOps/TrigonalLowOps.cpp @@ -46,6 +46,11 @@ #include "EbsdLib/Utilities/ComputeStereographicProjection.h" #include "EbsdLib/Utilities/EbsdStringUtils.hpp" #include "EbsdLib/Utilities/Fonts.hpp" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" +#include "EbsdLib/Utilities/GriddedColorKey.hpp" +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/PUCMColorKey.hpp" +#include "EbsdLib/Utilities/TSLColorKey.hpp" #ifdef EbsdLib_USE_PARALLEL_ALGORITHMS #include @@ -56,9 +61,29 @@ #include using namespace ebsdlib; +namespace +{ +ebsdlib::IColorKey::Pointer keyForKind(ebsdlib::ColorKeyKind kind) +{ + static const auto k_TSL = std::make_shared(); + static const auto k_PUCM = std::make_shared("3"); + static const auto k_NH = std::make_shared(ebsdlib::FundamentalSectorGeometry::trigonalLow()); + switch(kind) + { + case ebsdlib::ColorKeyKind::PUCM: + return k_PUCM; + case ebsdlib::ColorKeyKind::NolzeHielscher: + return k_NH; + case ebsdlib::ColorKeyKind::TSL: + break; + } + return k_TSL; +} +} // namespace + namespace TrigonalLow { -constexpr std::array k_OdfNumBins = {72, 72, 24}; // Represents a 5Deg bin +constexpr std::array k_OdfNumBins = {72, 72, 24}; // Represents a 5Deg bin in homochoric space static const std::array k_OdfDimInitValue = {std::pow((0.75 * (ebsdlib::constants::k_PiD - std::sin(ebsdlib::constants::k_PiD))), (1.0 / 3.0)), std::pow((0.75 * (ebsdlib::constants::k_PiD - std::sin(ebsdlib::constants::k_PiD))), (1.0 / 3.0)), @@ -67,8 +92,8 @@ static const std::array k_OdfDimStepValue = {k_OdfDimInitValue[0] / s k_OdfDimInitValue[2] / static_cast(k_OdfNumBins[2] / 2)}; constexpr int k_SymSize0 = 2; -constexpr int k_SymSize1 = 2; -constexpr int k_SymSize2 = 2; +constexpr int k_SymSize1 = 6; +constexpr int k_SymSize2 = 6; constexpr size_t k_OdfSize = 124416; constexpr size_t k_MdfSize = 124416; @@ -110,6 +135,89 @@ static const std::vector k_MatSym = { constexpr double k_EtaMin = -120.0; constexpr double k_EtaMax = 0.0; constexpr double k_ChiMax = 90.0; + +// --------------------------------------------------------------------------- +// SymOps: convention-aware bundle of symmetry operations + plane-family +// direction tables. Mirrors the pattern in HexagonalOps. +// +// CANONICAL = X||a* (the v3 hand-typed values above are the MTEX-validated +// source of truth). X||a is derived via 30°-about-c similarity transform. +// +// For TrigonalLow (Laue class -3), the canonical k_QuatSym contains only +// c-axis rotations (no basal-plane 180° flips), so the conjugation is a +// no-op for the sym ops; the convention only changes the direction tables. +// +// Note on sym op ordering: the order of entries in k_QuatSym originates +// from the EMsoftOO project, hand-derived for loop efficiency. There is +// no expected mathematical relationship between consecutive entries. +// +// See Code_Review/v3_phase0_design_notes.md §5 for the design pattern and +// §16 for the canonical-direction reasoning. +// --------------------------------------------------------------------------- +struct SymOps +{ + std::vector quat; + std::vector rod; + std::vector mat; + + std::vector dirsFamily0; // {0001} c-axis + std::vector dirsFamily1; // <-1-120>-style family + std::vector dirsFamily2; // <2-1-10>-style family + + template + static SymOps build() + { + // Canonical (X||a*) plane-family direction sets. + const std::vector canonicalDirsFamily0 = {{0.0, 0.0, 1.0}}; + const std::vector canonicalDirsFamily1 = {{-ebsdlib::constants::k_Root3Over2D, -0.5, 0.0}, {ebsdlib::constants::k_Root3Over2D, -0.5, 0.0}, {0.0, 1.0, 0.0}}; + const std::vector canonicalDirsFamily2 = {{ebsdlib::constants::k_Root3Over2D, -0.5, 0.0}, {0.0, 1.0, 0.0}, {-ebsdlib::constants::k_Root3Over2D, -0.5, 0.0}}; + + if constexpr(Conv == ebsdlib::HexConvention::XParallelAStar) + { + return SymOps{k_QuatSym, k_RodSym, k_MatSym, canonicalDirsFamily0, canonicalDirsFamily1, canonicalDirsFamily2}; + } + else // XParallelA -- derive by 30°-about-c similarity transform. + { + const double sin15 = std::sin(15.0 * ebsdlib::constants::k_PiOver180D); + const double cos15 = std::cos(15.0 * ebsdlib::constants::k_PiOver180D); + const QuatD q30(0.0, 0.0, sin15, cos15); + const QuatD q30Inv = q30.conjugate(); + + const double c30 = ebsdlib::constants::k_Root3Over2D; + const double s30 = 0.5; + const ebsdlib::Matrix3X3D rz30(c30, -s30, 0.0, s30, c30, 0.0, 0.0, 0.0, 1.0); + + SymOps out; + out.quat.reserve(k_QuatSym.size()); + out.rod.reserve(k_QuatSym.size()); + out.mat.reserve(k_QuatSym.size()); + for(const auto& qStar : k_QuatSym) + { + const QuatD qA = q30 * qStar * q30Inv; + out.quat.push_back(qA); + out.mat.push_back(qA.toOrientationMatrix().toGMatrix()); + out.rod.push_back(qA.toRodrigues()); + } + + out.dirsFamily0 = canonicalDirsFamily0; // c-axis: invariant + out.dirsFamily1.reserve(canonicalDirsFamily1.size()); + out.dirsFamily2.reserve(canonicalDirsFamily2.size()); + for(const auto& d : canonicalDirsFamily1) + { + out.dirsFamily1.push_back(rz30 * d); + } + for(const auto& d : canonicalDirsFamily2) + { + out.dirsFamily2.push_back(rz30 * d); + } + return out; + } + } +}; + +static const SymOps k_SymOps_XParallelAStar = SymOps::build(); +static const SymOps k_SymOps_XParallelA = SymOps::build(); + } // namespace TrigonalLow // ----------------------------------------------------------------------------- @@ -479,58 +587,50 @@ class GenerateSphereCoordsImpl ebsdlib::FloatArrayType* m_xyz001; ebsdlib::FloatArrayType* m_xyz011; ebsdlib::FloatArrayType* m_xyz111; + const SymOps* m_Sym; public: - GenerateSphereCoordsImpl(ebsdlib::FloatArrayType* eulerAngles, ebsdlib::FloatArrayType* xyz001Coords, ebsdlib::FloatArrayType* xyz011Coords, ebsdlib::FloatArrayType* xyz111Coords) + GenerateSphereCoordsImpl(ebsdlib::FloatArrayType* eulerAngles, ebsdlib::FloatArrayType* xyz001Coords, ebsdlib::FloatArrayType* xyz011Coords, ebsdlib::FloatArrayType* xyz111Coords, const SymOps* sym) : m_Eulers(eulerAngles) , m_xyz001(xyz001Coords) , m_xyz011(xyz011Coords) , m_xyz111(xyz111Coords) + , m_Sym(sym) { } virtual ~GenerateSphereCoordsImpl() = default; + static inline void emitDirAndAntipode(const ebsdlib::Matrix3X3D& gTranspose, const ebsdlib::Matrix3X1D& dir, ebsdlib::FloatArrayType* dest, size_t pairOffsetTuples) + { + const size_t plus = pairOffsetTuples * 3; + const size_t minus = plus + 3; + (gTranspose * dir).copyInto(dest->getPointer(plus)); + std::transform(dest->getPointer(plus), dest->getPointer(plus + 3), dest->getPointer(minus), [](float v) { return v * -1.0F; }); + } + void generate(size_t start, size_t end) const { - ebsdlib::Matrix3X3D gTranspose; - ebsdlib::Matrix3X1D direction(0.0, 0.0, 0.0); + const size_t f0Stride = m_Sym->dirsFamily0.size() * 2; + const size_t f1Stride = m_Sym->dirsFamily1.size() * 2; + const size_t f2Stride = m_Sym->dirsFamily2.size() * 2; - // Generate all the Coordinates for(size_t i = start; i < end; ++i) { - ebsdlib::Matrix3X3D g(EulerDType(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)).toOrientationMatrix().data()); - - gTranspose = g.transpose(); - - // ----------------------------------------------------------------------------- - // [0001] Family - direction[0] = 0.0; - direction[1] = 0.0; - direction[2] = 1.0; - (gTranspose * direction).copyInto(m_xyz001->getPointer(i * 6)); - std::transform(m_xyz001->getPointer(i * 6), m_xyz001->getPointer(i * 6 + 3), - m_xyz001->getPointer(i * 6 + 3), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 - - // ----------------------------------------------------------------------------- - // [-1-120] Family - direction[0] = -0.5; - direction[1] = ebsdlib::constants::k_Root3Over2D; - direction[2] = 0.0; - (gTranspose * direction).copyInto(m_xyz011->getPointer(i * 6)); - std::transform(m_xyz011->getPointer(i * 6), m_xyz011->getPointer(i * 6 + 3), - m_xyz011->getPointer(i * 6 + 3), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 - - // ----------------------------------------------------------------------------- - // [2-1-10] Family - direction[0] = 1; - direction[1] = 0; - direction[2] = 0; - (gTranspose * direction).copyInto(m_xyz111->getPointer(i * 6)); - std::transform(m_xyz111->getPointer(i * 6), m_xyz111->getPointer(i * 6 + 3), - m_xyz111->getPointer(i * 6 + 3), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 + EulerDType euler(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)); + ebsdlib::Matrix3X3D gTranspose = euler.toOrientationMatrix().toGMatrix().transpose(); + + for(size_t k = 0; k < m_Sym->dirsFamily0.size(); ++k) + { + emitDirAndAntipode(gTranspose, m_Sym->dirsFamily0[k], m_xyz001, i * f0Stride + k * 2); + } + for(size_t k = 0; k < m_Sym->dirsFamily1.size(); ++k) + { + emitDirAndAntipode(gTranspose, m_Sym->dirsFamily1[k], m_xyz011, i * f1Stride + k * 2); + } + for(size_t k = 0; k < m_Sym->dirsFamily2.size(); ++k) + { + emitDirAndAntipode(gTranspose, m_Sym->dirsFamily2[k], m_xyz111, i * f2Stride + k * 2); + } } } @@ -544,7 +644,8 @@ class GenerateSphereCoordsImpl } // namespace TrigonalLow // ----------------------------------------------------------------------------- -void TrigonalLowOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111) const +void TrigonalLowOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111, + ebsdlib::HexConvention conv) const { size_t nOrientations = eulers->getNumberOfTuples(); @@ -562,16 +663,19 @@ void TrigonalLowOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eul xyz111->resizeTuples(nOrientations * TrigonalLow::k_SymSize2 * 3); } + // Pick the convention-appropriate SymOps once. + const TrigonalLow::SymOps* sym = (conv == ebsdlib::HexConvention::XParallelAStar) ? &TrigonalLow::k_SymOps_XParallelAStar : &TrigonalLow::k_SymOps_XParallelA; + #ifdef EbsdLib_USE_PARALLEL_ALGORITHMS bool doParallel = true; if(doParallel) { - tbb::parallel_for(tbb::blocked_range(0, nOrientations), TrigonalLow::GenerateSphereCoordsImpl(eulers, xyz001, xyz011, xyz111), tbb::auto_partitioner()); + tbb::parallel_for(tbb::blocked_range(0, nOrientations), TrigonalLow::GenerateSphereCoordsImpl(eulers, xyz001, xyz011, xyz111, sym), tbb::auto_partitioner()); } else #endif { - TrigonalLow::GenerateSphereCoordsImpl serial(eulers, xyz001, xyz011, xyz111); + TrigonalLow::GenerateSphereCoordsImpl serial(eulers, xyz001, xyz011, xyz111, sym); serial.generate(0, nOrientations); } } @@ -590,17 +694,17 @@ bool TrigonalLowOps::inUnitTriangle(double eta, double chi) const } // ----------------------------------------------------------------------------- -ebsdlib::Rgb TrigonalLowOps::generateIPFColor(double* eulers, double* refDir, bool degToRad) const +ebsdlib::Rgb TrigonalLowOps::generateIPFColor(double* eulers, double* refDir, bool degToRad, ebsdlib::ColorKeyKind kind) const { - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- -ebsdlib::Rgb TrigonalLowOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad) const +ebsdlib::Rgb TrigonalLowOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad, ebsdlib::ColorKeyKind kind) const { double eulers[3] = {phi1, phi, phi2}; double refDir[3] = {refDir0, refDir1, refDir2}; - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- @@ -625,15 +729,18 @@ ebsdlib::Rgb TrigonalLowOps::generateRodriguesColor(double r1, double r2, double } // ----------------------------------------------------------------------------- -std::array TrigonalLowOps::getDefaultPoleFigureNames() const +std::array TrigonalLowOps::getDefaultPoleFigureNames(ebsdlib::HexConvention conv) const { + // See TrigonalOps::getDefaultPoleFigureNames for the rationale on why the + // conv parameter is plumbed but does not change the returned strings here. + (void)conv; return {"<0001>", "<-1-120>", "<2-1-10>"}; } // ----------------------------------------------------------------------------- std::vector TrigonalLowOps::generatePoleFigure(PoleFigureConfiguration_t& config) const { - std::array labels = getDefaultPoleFigureNames(); + std::array labels = getDefaultPoleFigureNames(config.hexConvention); std::string label0 = labels[0]; std::string label1 = labels[1]; std::string label2 = labels[2]; @@ -665,7 +772,7 @@ std::vector TrigonalLowOps::generatePoleFigure config.sphereRadius = 1.0f; // Generate the coords on the sphere **** Parallelized - generateSphereCoordsFromEulers(config.eulers, xyz001.get(), xyz011.get(), xyz111.get()); + generateSphereCoordsFromEulers(config.eulers, xyz001.get(), xyz011.get(), xyz111.get(), config.hexConvention); // These arrays hold the "intensity" images which eventually get converted to an actual Color RGB image // Generate the modified Lambert projection images (Squares, 2 of them, 1 for Northern Hemisphere, 1 for Southern Hemisphere @@ -789,7 +896,7 @@ std::vector TrigonalLowOps::generatePoleFigure namespace { // ----------------------------------------------------------------------------- -ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TrigonalLowOps* ops, int imageDim, bool generateEntirePlane) +ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TrigonalLowOps* ops, int imageDim, bool generateEntirePlane, const ebsdlib::IColorKey* key) { std::vector dims(1, 4); std::string arrayName = EbsdStringUtils::replace(ops->getSymmetryName(), "/", "_"); @@ -837,7 +944,7 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TrigonalLowOps* ops, int } else { - color = ops->generateIPFColor(k_Orientation.data(), sphericalCoords.data(), false); + color = ops->computeIPFColor(k_Orientation.data(), sphericalCoords.data(), false, key); } pixelPtr[idx] = color; } @@ -846,9 +953,59 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TrigonalLowOps* ops, int return image; } +} // namespace + // ----------------------------------------------------------------------------- -void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, std::vector margins, std::array figureOrigin, std::array figureCenter, - bool drawFullCircle) +bool TrigonalLowOps::mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const +{ + double xInc = 1.0 / static_cast(imageDim); + double yInc = 1.0 / static_cast(imageDim); + + double x = -1.0 + 2.0 * xPixel * xInc; + double y = -1.0 + 2.0 * yPixel * yInc; + + double sumSquares = (x * x) + (y * y); + if(sumSquares > 1.0) + { + return false; + } + + if(y > 0.0) + { + return false; + } + + // Find the slope of the bounding line. + static const double m = std::sin(60.0 * ebsdlib::constants::k_PiOver180D) / std::cos(60.0 * ebsdlib::constants::k_PiOver180D); + + if(x <= 0.0 && y <= 0.0 && x < y / m) + { + return false; + } + + auto sc = stereographic::utils::StereoToSpherical(x, y).normalize(); + + sphereDir[0] = static_cast(sc[0]); + sphereDir[1] = static_cast(sc[1]); + sphereDir[2] = static_cast(sc[2]); + return true; +} + +// ----------------------------------------------------------------------------- +std::array TrigonalLowOps::adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const +{ + if(!generateEntirePlane) + { + figureOrigin[0] = -legendWidth * 0.0F; + figureOrigin[1] = -legendHeight * 0.25F; + } + return figureOrigin; +} + +// ----------------------------------------------------------------------------- +void TrigonalLowOps::drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, + std::array figureCenter, bool drawFullCircle, ebsdlib::HexConvention conv) const { int legendHeight = canvasDim - margins[0] - margins[2]; int legendWidth = canvasDim - margins[1] - margins[3]; @@ -867,7 +1024,11 @@ void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float int halfHeight = legendHeight / 2; std::vector angles = {0.0f, 30.0f, 60.0f, 90.0f, 120.0f, 150.0f, 180.0f, 210.0f, 240.0f, 270.0f, 300.0f, 330.0f}; - std::vector labels2 = {"[2-1-10]", "[10-10]", "[11-20]", "[01-10]", "[-12-10]", "[-1100]", "[-2110]", "[-1010]", "[-1-120]", "[0-110]", "[1-210]", "[1-100]"}; + + // See HexagonalOps::drawIPFAnnotations for the X||a / X||a* label-table reasoning. + static const std::vector labels_X_a = {"[2-1-10]", "[10-10]", "[11-20]", "[01-10]", "[-12-10]", "[-1100]", "[-2110]", "[-1010]", "[-1-120]", "[0-110]", "[1-210]", "[1-100]"}; + static const std::vector labels_X_astar = {"[10-10]", "[11-20]", "[01-10]", "[-12-10]", "[-1100]", "[-2110]", "[-1010]", "[-1-120]", "[0-110]", "[1-210]", "[1-100]", "[2-1-10]"}; + const std::vector& labels2 = (conv == ebsdlib::HexConvention::XParallelA) ? labels_X_a : labels_X_astar; std::vector xAdj = { 0.1F, 0.0F, 0.0F, -0.5F, -1.0F, -1.0F, -1.1F, -1.1F, -1.1F, -0.5F, 0.0F, 0.0F, @@ -942,21 +1103,14 @@ void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float } } -} // namespace - // ----------------------------------------------------------------------------- -ebsdlib::UInt8ArrayType::Pointer TrigonalLowOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane) const +ebsdlib::UInt8ArrayType::Pointer TrigonalLowOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane, ebsdlib::HexConvention conv, ebsdlib::ColorKeyKind kind, bool gridded) const { - // Figure out the Legend Pixel Size + // Compute legend dimensions (same formula as annotateIPFImage uses) const float fontPtSize = static_cast(canvasDim) / 24.0f; - const std::vector margins = {fontPtSize * 3, // Top - static_cast(canvasDim / 7.0f), // Right - fontPtSize * 2, // Bottom - static_cast(canvasDim / 7.0f)}; // Left - - int legendHeight = canvasDim - margins[0] - margins[2]; - int legendWidth = canvasDim - margins[1] - margins[3]; - + const std::vector margins = {fontPtSize * 3, static_cast(canvasDim / 7.0f), fontPtSize * 2, static_cast(canvasDim / 7.0f)}; + int legendHeight = canvasDim - static_cast(margins[0]) - static_cast(margins[2]); + int legendWidth = canvasDim - static_cast(margins[1]) - static_cast(margins[3]); if(legendHeight > legendWidth) { legendHeight = legendWidth; @@ -965,64 +1119,17 @@ ebsdlib::UInt8ArrayType::Pointer TrigonalLowOps::generateIPFTriangleLegend(int c { legendWidth = legendHeight; } - int pageHeight = canvasDim; - int pageWidth = canvasDim; - int halfWidth = legendWidth / 2; - int halfHeight = legendHeight / 2; - std::array figureOrigin = {margins[3], margins[0] * 1.33F}; - if(!generateEntirePlane) + // Generate the colored SST triangle image (ARGB) + ebsdlib::IColorKey::Pointer key = keyForKind(kind); + if(gridded) { - figureOrigin[0] = 0.0F - legendWidth * 0.0F; - figureOrigin[1] = 0.0F - legendHeight * 0.25F; + key = std::make_shared(key, 1.0); } - std::array figureCenter = {figureOrigin[0] + halfWidth, figureOrigin[1] + halfHeight}; - - ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane); - - // Create a Canvas to draw into - canvas_ity::canvas context(pageWidth, pageHeight); - - std::vector latoBold = ebsdlib::fonts::GetLatoBold(); - std::vector latoRegular = ebsdlib::fonts::GetLatoRegular(); - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize); - context.set_color(canvas_ity::fill_style, 0.0f, 0.0f, 0.0f, 1.0f); - canvas_ity::baseline_style const baselines[] = {canvas_ity::alphabetic, canvas_ity::top, canvas_ity::middle, canvas_ity::bottom, canvas_ity::hanging, canvas_ity::ideographic}; - context.text_baseline = baselines[0]; - - // Fill the whole background with white - context.move_to(0.0f, 0.0f); - context.line_to(static_cast(pageWidth), 0.0f); - context.line_to(static_cast(pageWidth), static_cast(pageHeight)); - context.line_to(0.0f, static_cast(pageHeight)); - context.line_to(0.0f, 0.0f); - context.close_path(); - context.set_color(canvas_ity::fill_style, 1.0f, 1.0f, 1.0f, 1.0f); - context.fill(); - - // Convert from ARGB to RGBA which is what canvas_itk wants - image = ebsdlib::ConvertColorOrder(image.get(), legendHeight); - - // We need to mirror across the X Axis because the image was drawn with +Y pointing down - image = ebsdlib::MirrorImage(image.get(), legendHeight); - - context.draw_image(image->getPointer(0), legendWidth, legendHeight, legendWidth * image->getNumberOfComponents(), figureOrigin[0], figureOrigin[1], static_cast(legendWidth), - static_cast(legendHeight)); - - // Draw Title of Legend - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize * 1.5); - ebsdlib::WriteText(context, getSymmetryName(), {margins[0], static_cast(fontPtSize * 1.5)}, fontPtSize * 1.5); - - context.set_font(latoRegular.data(), static_cast(latoRegular.size()), fontPtSize); - DrawFullCircleAnnotations(context, canvasDim, fontPtSize, margins, figureOrigin, figureCenter, generateEntirePlane); - - // Fetch the rendered RGBA pixels from the entire canvas. - ebsdlib::UInt8ArrayType::Pointer rgbaCanvasImage = ebsdlib::UInt8ArrayType::CreateArray(pageHeight * pageWidth, {4ULL}, "Triangle Legend", true); - // std::vector rgbaCanvasImage(static_cast(pageHeight * pageWidth * 4)); - context.get_image_data(rgbaCanvasImage->getPointer(0), pageWidth, pageHeight, pageWidth * 4, 0, 0); + ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane, key.get()); - rgbaCanvasImage = ebsdlib::RemoveAlphaChannel(rgbaCanvasImage.get()); - return rgbaCanvasImage; + // Annotate with title and Miller index labels + return annotateIPFImage(image, legendHeight, canvasDim, getSymmetryName(), generateEntirePlane, false, conv); } // ----------------------------------------------------------------------------- diff --git a/Source/EbsdLib/LaueOps/TrigonalLowOps.h b/Source/EbsdLib/LaueOps/TrigonalLowOps.h index 17ca764a..fdc4ccc5 100644 --- a/Source/EbsdLib/LaueOps/TrigonalLowOps.h +++ b/Source/EbsdLib/LaueOps/TrigonalLowOps.h @@ -201,7 +201,8 @@ class EbsdLib_EXPORT TrigonalLowOps : public LaueOps double getF1spt(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; double getF7(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; - void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3) const override; + void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3, + ebsdlib::HexConvention conv) const override; /** * @brief @@ -217,7 +218,7 @@ class EbsdLib_EXPORT TrigonalLowOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateIPFColor Generates an ARGB Color from a Euler Angle and Reference Direction @@ -230,7 +231,7 @@ class EbsdLib_EXPORT TrigonalLowOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateRodriguesColor Generates an RGB Color from a Rodrigues Vector @@ -256,13 +257,22 @@ class EbsdLib_EXPORT TrigonalLowOps : public LaueOps * @brief Returns the names for each of the three standard pole figures that are generated. For example *<001>, <011> and <111> for a cubic system */ - std::array getDefaultPoleFigureNames() const override; + std::array getDefaultPoleFigureNames(ebsdlib::HexConvention conv) const override; /** * @brief generateStandardTriangle Generates an RGBA array that is a color "Standard" IPF Triangle Legend used for IPF Color Maps. * @return */ - ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane) const override; + ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane, ebsdlib::HexConvention conv, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL, + bool gridded = false) const override; + + bool mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const override; + + void drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, std::array figureCenter, + bool drawFullCircle, ebsdlib::HexConvention conv) const override; + + std::array adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const override; /** * @brief Returns if the given Quaternion is within the Rodrigues Fundamental Zone (RFZ) @@ -278,8 +288,6 @@ class EbsdLib_EXPORT TrigonalLowOps : public LaueOps */ bool isInsideFZ(const RodriguesDType& rod) const override; -protected: -public: TrigonalLowOps(const TrigonalLowOps&) = delete; // Copy Constructor Not Implemented TrigonalLowOps(TrigonalLowOps&&) = delete; // Move Constructor Not Implemented TrigonalLowOps& operator=(const TrigonalLowOps&) = delete; // Copy Assignment Not Implemented diff --git a/Source/EbsdLib/LaueOps/TrigonalOps.cpp b/Source/EbsdLib/LaueOps/TrigonalOps.cpp index 26ffc949..66b5710b 100644 --- a/Source/EbsdLib/LaueOps/TrigonalOps.cpp +++ b/Source/EbsdLib/LaueOps/TrigonalOps.cpp @@ -46,7 +46,12 @@ #include "EbsdLib/Utilities/ComputeStereographicProjection.h" #include "EbsdLib/Utilities/EbsdStringUtils.hpp" #include "EbsdLib/Utilities/Fonts.hpp" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" +#include "EbsdLib/Utilities/GriddedColorKey.hpp" +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/PUCMColorKey.hpp" #include "EbsdLib/Utilities/PoleFigureUtilities.h" +#include "EbsdLib/Utilities/TSLColorKey.hpp" #ifdef EbsdLib_USE_PARALLEL_ALGORITHMS #include @@ -55,9 +60,29 @@ #endif using namespace ebsdlib; +namespace +{ +ebsdlib::IColorKey::Pointer keyForKind(ebsdlib::ColorKeyKind kind) +{ + static const auto k_TSL = std::make_shared(); + static const auto k_PUCM = std::make_shared("32"); + static const auto k_NH = std::make_shared(ebsdlib::FundamentalSectorGeometry::trigonalHigh()); + switch(kind) + { + case ebsdlib::ColorKeyKind::PUCM: + return k_PUCM; + case ebsdlib::ColorKeyKind::NolzeHielscher: + return k_NH; + case ebsdlib::ColorKeyKind::TSL: + break; + } + return k_TSL; +} +} // namespace + namespace TrigonalHigh { -constexpr std::array k_OdfNumBins = {36, 36, 24}; // Represents a 5Deg bin +constexpr std::array k_OdfNumBins = {36, 36, 24}; // Represents a 5Deg bin in homochoric space static const std::array k_OdfDimInitValue = {std::pow((0.75 * (ebsdlib::constants::k_PiOver2D - std::sin(ebsdlib::constants::k_PiOver2D))), (1.0 / 3.0)), std::pow((0.75 * (ebsdlib::constants::k_PiOver2D - std::sin(ebsdlib::constants::k_PiOver2D))), (1.0 / 3.0)), @@ -66,8 +91,8 @@ static const std::array k_OdfDimStepValue = {k_OdfDimInitValue[0] / s k_OdfDimInitValue[2] / static_cast(k_OdfNumBins[2] / 2)}; constexpr int k_SymSize0 = 2; -constexpr int k_SymSize1 = 2; -constexpr int k_SymSize2 = 2; +constexpr int k_SymSize1 = 6; +constexpr int k_SymSize2 = 6; constexpr size_t k_OdfSize = 31104; constexpr size_t k_MdfSize = 31104; @@ -127,6 +152,92 @@ static const std::vector k_MatSym = { constexpr double k_EtaMin = -90.0; constexpr double k_EtaMax = -30.0; constexpr double k_ChiMax = 90.0; + +// --------------------------------------------------------------------------- +// SymOps: convention-aware bundle of symmetry operations + plane-family +// direction tables. Mirrors the pattern in HexagonalOps. +// +// CANONICAL = X||a* (the v3 hand-typed values above are the MTEX-validated +// source of truth). X||a is derived via 30°-about-c similarity transform. +// +// For TrigonalHigh (Laue class -3m), the canonical k_QuatSym contains 3 +// c-axis rotations + 3 basal-plane 180° flips; the 180°s are basis- +// dependent so the X||a derivation via 30°-about-c similarity transform +// yields different sym op values for the basal entries. The plane-family +// direction tables also rotate by 30° between bases. +// +// Note on sym op ordering: the order of entries in k_QuatSym originates +// from the EMsoftOO project, hand-derived for loop efficiency. There is +// no expected mathematical relationship between consecutive entries. +// +// See Code_Review/v3_phase0_design_notes.md §5 for the design pattern and +// §16 for the canonical-direction reasoning. +// --------------------------------------------------------------------------- +struct SymOps +{ + std::vector quat; + std::vector rod; + std::vector mat; + + std::vector dirsFamily0; // {0001} c-axis + std::vector dirsFamily1; // <0-110>-style family + std::vector dirsFamily2; // <1-100>-style family + + template + static SymOps build() + { + // Canonical (X||a*) plane-family direction sets. Values are taken from + // the previous inline-hardcoded blocks of TrigonalOps' GenerateSphereCoordsImpl. + const std::vector canonicalDirsFamily0 = {{0.0, 0.0, 1.0}}; + const std::vector canonicalDirsFamily1 = {{-0.5, -ebsdlib::constants::k_Root3Over2D, 0.0}, {1.0, 0.0, 0.0}, {-0.5, ebsdlib::constants::k_Root3Over2D, 0.0}}; + const std::vector canonicalDirsFamily2 = {{0.5, -ebsdlib::constants::k_Root3Over2D, 0.0}, {0.5, ebsdlib::constants::k_Root3Over2D, 0.0}, {-1.0, 0.0, 0.0}}; + + if constexpr(Conv == ebsdlib::HexConvention::XParallelAStar) + { + return SymOps{k_QuatSym, k_RodSym, k_MatSym, canonicalDirsFamily0, canonicalDirsFamily1, canonicalDirsFamily2}; + } + else // XParallelA -- derive by 30°-about-c similarity transform. + { + const double sin15 = std::sin(15.0 * ebsdlib::constants::k_PiOver180D); + const double cos15 = std::cos(15.0 * ebsdlib::constants::k_PiOver180D); + const QuatD q30(0.0, 0.0, sin15, cos15); + const QuatD q30Inv = q30.conjugate(); + + const double c30 = ebsdlib::constants::k_Root3Over2D; + const double s30 = 0.5; + const ebsdlib::Matrix3X3D rz30(c30, -s30, 0.0, s30, c30, 0.0, 0.0, 0.0, 1.0); + + SymOps out; + out.quat.reserve(k_QuatSym.size()); + out.rod.reserve(k_QuatSym.size()); + out.mat.reserve(k_QuatSym.size()); + for(const auto& qStar : k_QuatSym) + { + const QuatD qA = q30 * qStar * q30Inv; + out.quat.push_back(qA); + out.mat.push_back(qA.toOrientationMatrix().toGMatrix()); + out.rod.push_back(qA.toRodrigues()); + } + + out.dirsFamily0 = canonicalDirsFamily0; // c-axis: invariant + out.dirsFamily1.reserve(canonicalDirsFamily1.size()); + out.dirsFamily2.reserve(canonicalDirsFamily2.size()); + for(const auto& d : canonicalDirsFamily1) + { + out.dirsFamily1.push_back(rz30 * d); + } + for(const auto& d : canonicalDirsFamily2) + { + out.dirsFamily2.push_back(rz30 * d); + } + return out; + } + } +}; + +static const SymOps k_SymOps_XParallelAStar = SymOps::build(); +static const SymOps k_SymOps_XParallelA = SymOps::build(); + } // namespace TrigonalHigh // ----------------------------------------------------------------------------- @@ -500,58 +611,50 @@ class GenerateSphereCoordsImpl ebsdlib::FloatArrayType* m_xyz001; ebsdlib::FloatArrayType* m_xyz011; ebsdlib::FloatArrayType* m_xyz111; + const SymOps* m_Sym; public: - GenerateSphereCoordsImpl(ebsdlib::FloatArrayType* eulerAngles, ebsdlib::FloatArrayType* xyz001Coords, ebsdlib::FloatArrayType* xyz011Coords, ebsdlib::FloatArrayType* xyz111Coords) + GenerateSphereCoordsImpl(ebsdlib::FloatArrayType* eulerAngles, ebsdlib::FloatArrayType* xyz001Coords, ebsdlib::FloatArrayType* xyz011Coords, ebsdlib::FloatArrayType* xyz111Coords, const SymOps* sym) : m_Eulers(eulerAngles) , m_xyz001(xyz001Coords) , m_xyz011(xyz011Coords) , m_xyz111(xyz111Coords) + , m_Sym(sym) { } virtual ~GenerateSphereCoordsImpl() = default; + static inline void emitDirAndAntipode(const ebsdlib::Matrix3X3D& gTranspose, const ebsdlib::Matrix3X1D& dir, ebsdlib::FloatArrayType* dest, size_t pairOffsetTuples) + { + const size_t plus = pairOffsetTuples * 3; + const size_t minus = plus + 3; + (gTranspose * dir).copyInto(dest->getPointer(plus)); + std::transform(dest->getPointer(plus), dest->getPointer(plus + 3), dest->getPointer(minus), [](float v) { return v * -1.0F; }); + } + void generate(size_t start, size_t end) const { - ebsdlib::Matrix3X3D gTranspose; - ebsdlib::Matrix3X1D direction(0.0, 0.0, 0.0); + const size_t f0Stride = m_Sym->dirsFamily0.size() * 2; + const size_t f1Stride = m_Sym->dirsFamily1.size() * 2; + const size_t f2Stride = m_Sym->dirsFamily2.size() * 2; - // Generate all the Coordinates for(size_t i = start; i < end; ++i) { - ebsdlib::Matrix3X3D g(EulerDType(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)).toOrientationMatrix().data()); - - gTranspose = g.transpose(); - - // ----------------------------------------------------------------------------- - // [0001] Family - direction[0] = 0.0; - direction[1] = 0.0; - direction[2] = 1.0; - (gTranspose * direction).copyInto(m_xyz001->getPointer(i * 6)); - std::transform(m_xyz001->getPointer(i * 6), m_xyz001->getPointer(i * 6 + 3), - m_xyz001->getPointer(i * 6 + 3), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 - - // ----------------------------------------------------------------------------- - // [0-110] - direction[0] = 0; - direction[1] = -1.0; - direction[2] = 0.0; - (gTranspose * direction).copyInto(m_xyz011->getPointer(i * 6)); - std::transform(m_xyz011->getPointer(i * 6), m_xyz011->getPointer(i * 6 + 3), - m_xyz011->getPointer(i * 6 + 3), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 - - // ----------------------------------------------------------------------------- - // [1-100] - direction[0] = ebsdlib::constants::k_Root3Over2D; - direction[1] = -0.5; - direction[2] = 0; - (gTranspose * direction).copyInto(m_xyz111->getPointer(i * 6)); - std::transform(m_xyz111->getPointer(i * 6), m_xyz111->getPointer(i * 6 + 3), - m_xyz111->getPointer(i * 6 + 3), // write to the next triplet in memory - [](float value) { return value * -1.0F; }); // Multiply each value by -1.0 + EulerDType euler(m_Eulers->getValue(i * 3), m_Eulers->getValue(i * 3 + 1), m_Eulers->getValue(i * 3 + 2)); + ebsdlib::Matrix3X3D gTranspose = euler.toOrientationMatrix().toGMatrix().transpose(); + + for(size_t k = 0; k < m_Sym->dirsFamily0.size(); ++k) + { + emitDirAndAntipode(gTranspose, m_Sym->dirsFamily0[k], m_xyz001, i * f0Stride + k * 2); + } + for(size_t k = 0; k < m_Sym->dirsFamily1.size(); ++k) + { + emitDirAndAntipode(gTranspose, m_Sym->dirsFamily1[k], m_xyz011, i * f1Stride + k * 2); + } + for(size_t k = 0; k < m_Sym->dirsFamily2.size(); ++k) + { + emitDirAndAntipode(gTranspose, m_Sym->dirsFamily2[k], m_xyz111, i * f2Stride + k * 2); + } } } @@ -565,7 +668,8 @@ class GenerateSphereCoordsImpl } // namespace TrigonalHigh // ----------------------------------------------------------------------------- -void TrigonalOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111) const +void TrigonalOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* xyz001, ebsdlib::FloatArrayType* xyz011, ebsdlib::FloatArrayType* xyz111, + ebsdlib::HexConvention conv) const { size_t nOrientations = eulers->getNumberOfTuples(); @@ -583,16 +687,19 @@ void TrigonalOps::generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers xyz111->resizeTuples(nOrientations * TrigonalHigh::k_SymSize2 * 3); } + // Pick the convention-appropriate SymOps once. + const TrigonalHigh::SymOps* sym = (conv == ebsdlib::HexConvention::XParallelAStar) ? &TrigonalHigh::k_SymOps_XParallelAStar : &TrigonalHigh::k_SymOps_XParallelA; + #ifdef EbsdLib_USE_PARALLEL_ALGORITHMS bool doParallel = true; if(doParallel) { - tbb::parallel_for(tbb::blocked_range(0, nOrientations), TrigonalHigh::GenerateSphereCoordsImpl(eulers, xyz001, xyz011, xyz111), tbb::auto_partitioner()); + tbb::parallel_for(tbb::blocked_range(0, nOrientations), TrigonalHigh::GenerateSphereCoordsImpl(eulers, xyz001, xyz011, xyz111, sym), tbb::auto_partitioner()); } else #endif { - TrigonalHigh::GenerateSphereCoordsImpl serial(eulers, xyz001, xyz011, xyz111); + TrigonalHigh::GenerateSphereCoordsImpl serial(eulers, xyz001, xyz011, xyz111, sym); serial.generate(0, nOrientations); } } @@ -611,17 +718,17 @@ bool TrigonalOps::inUnitTriangle(double eta, double chi) const } // ----------------------------------------------------------------------------- -ebsdlib::Rgb TrigonalOps::generateIPFColor(double* eulers, double* refDir, bool degToRad) const +ebsdlib::Rgb TrigonalOps::generateIPFColor(double* eulers, double* refDir, bool degToRad, ebsdlib::ColorKeyKind kind) const { - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- -ebsdlib::Rgb TrigonalOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad) const +ebsdlib::Rgb TrigonalOps::generateIPFColor(double phi1, double phi, double phi2, double refDir0, double refDir1, double refDir2, bool degToRad, ebsdlib::ColorKeyKind kind) const { double eulers[3] = {phi1, phi, phi2}; double refDir[3] = {refDir0, refDir1, refDir2}; - return computeIPFColor(eulers, refDir, degToRad); + return computeIPFColor(eulers, refDir, degToRad, keyForKind(kind).get()); } // ----------------------------------------------------------------------------- @@ -641,15 +748,21 @@ ebsdlib::Rgb TrigonalOps::generateRodriguesColor(double r1, double r2, double r3 } // ----------------------------------------------------------------------------- -std::array TrigonalOps::getDefaultPoleFigureNames() const +std::array TrigonalOps::getDefaultPoleFigureNames(ebsdlib::HexConvention conv) const { + // TrigonalHigh (-3m) has two distinct prism families and the OIM/MTEX + // labeling-tradition split that hex 6/mmm has does not apply cleanly. + // The conv parameter is plumbed for API uniformity but the returned + // strings are the same under both conventions for now; revisit if a + // user reports a specific OIM/MTEX label divergence here. + (void)conv; return {"<0001>", "<0-110>", "<1-100>"}; } // ----------------------------------------------------------------------------- std::vector TrigonalOps::generatePoleFigure(PoleFigureConfiguration_t& config) const { - std::array labels = getDefaultPoleFigureNames(); + std::array labels = getDefaultPoleFigureNames(config.hexConvention); std::string label0 = labels[0]; std::string label1 = labels[1]; std::string label2 = labels[2]; @@ -681,7 +794,7 @@ std::vector TrigonalOps::generatePoleFigure(Po config.sphereRadius = 1.0f; // Generate the coords on the sphere **** Parallelized - generateSphereCoordsFromEulers(config.eulers, xyz001.get(), xyz011.get(), xyz111.get()); + generateSphereCoordsFromEulers(config.eulers, xyz001.get(), xyz011.get(), xyz111.get(), config.hexConvention); // These arrays hold the "intensity" images which eventually get converted to an actual Color RGB image // Generate the modified Lambert projection images (Squares, 2 of them, 1 for Northern Hemisphere, 1 for Southern Hemisphere @@ -804,7 +917,7 @@ std::vector TrigonalOps::generatePoleFigure(Po namespace { // ----------------------------------------------------------------------------- -ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TrigonalOps* ops, int imageDim, bool generateEntirePlane) +ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TrigonalOps* ops, int imageDim, bool generateEntirePlane, const ebsdlib::IColorKey* key) { std::vector dims(1, 4); std::string arrayName = EbsdStringUtils::replace(ops->getSymmetryName(), "/", "_"); @@ -852,7 +965,7 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TrigonalOps* ops, int ima } else { - color = ops->generateIPFColor(k_Orientation.data(), sphericalCoords.data(), false); + color = ops->computeIPFColor(k_Orientation.data(), sphericalCoords.data(), false, key); } pixelPtr[idx] = color; @@ -862,9 +975,59 @@ ebsdlib::UInt8ArrayType::Pointer CreateIPFLegend(const TrigonalOps* ops, int ima return image; } +} // namespace + // ----------------------------------------------------------------------------- -void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, std::vector margins, std::array figureOrigin, std::array figureCenter, - bool drawFullCircle) +bool TrigonalOps::mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const +{ + double xInc = 1.0 / static_cast(imageDim); + double yInc = 1.0 / static_cast(imageDim); + + double x = -1.0 + 2.0 * xPixel * xInc; + double y = -1.0 + 2.0 * yPixel * yInc; + + double sumSquares = (x * x) + (y * y); + if(sumSquares > 1.0) + { + return false; + } + + if(x < 0.0 || y > 0.0) + { + return false; + } + + auto sc = stereographic::utils::StereoToSpherical(x, y).normalize(); + + // Find the slope of the bounding line. + static const double m = std::sin(30.0 * ebsdlib::constants::k_PiOver180D) / std::cos(30.0 * ebsdlib::constants::k_PiOver180D); + + if(std::fabs(sc[1] / sc[0]) < m) + { + return false; + } + + sphereDir[0] = static_cast(sc[0]); + sphereDir[1] = static_cast(sc[1]); + sphereDir[2] = static_cast(sc[2]); + return true; +} + +// ----------------------------------------------------------------------------- +std::array TrigonalOps::adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const +{ + if(!generateEntirePlane) + { + figureOrigin[0] = -(legendWidth / 2) * 0.25; + figureOrigin[1] = 0.0F - (legendHeight / 2) * .5; + } + return figureOrigin; +} + +// ----------------------------------------------------------------------------- +void TrigonalOps::drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, + std::array figureCenter, bool drawFullCircle, ebsdlib::HexConvention conv) const { int legendHeight = canvasDim - margins[0] - margins[2]; int legendWidth = canvasDim - margins[1] - margins[3]; @@ -883,7 +1046,11 @@ void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float int halfHeight = legendHeight / 2; std::vector angles = {0.0f, 30.0f, 60.0f, 90.0f, 120.0f, 150.0f, 180.0f, 210.0f, 240.0f, 270.0f, 300.0f, 330.0f}; - std::vector labels2 = {"[2-1-10]", "[10-10]", "[11-20]", "[01-10]", "[-12-10]", "[-1100]", "[-2110]", "[-1010]", "[-1-120]", "[0-110]", "[1-210]", "[1-100]"}; + + // See HexagonalOps::drawIPFAnnotations for the X||a / X||a* label-table reasoning. + static const std::vector labels_X_a = {"[2-1-10]", "[10-10]", "[11-20]", "[01-10]", "[-12-10]", "[-1100]", "[-2110]", "[-1010]", "[-1-120]", "[0-110]", "[1-210]", "[1-100]"}; + static const std::vector labels_X_astar = {"[10-10]", "[11-20]", "[01-10]", "[-12-10]", "[-1100]", "[-2110]", "[-1010]", "[-1-120]", "[0-110]", "[1-210]", "[1-100]", "[2-1-10]"}; + const std::vector& labels2 = (conv == ebsdlib::HexConvention::XParallelA) ? labels_X_a : labels_X_astar; std::vector xAdj = { 0.1F, 0.0F, 0.0F, -0.5F, -1.0F, -1.0F, -1.1F, -1.1F, -1.1F, -0.5F, 0.0F, 0.0F, @@ -950,20 +1117,14 @@ void DrawFullCircleAnnotations(canvas_ity::canvas& context, int canvasDim, float } } -} // namespace // ----------------------------------------------------------------------------- -ebsdlib::UInt8ArrayType::Pointer TrigonalOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane) const +ebsdlib::UInt8ArrayType::Pointer TrigonalOps::generateIPFTriangleLegend(int canvasDim, bool generateEntirePlane, ebsdlib::HexConvention conv, ebsdlib::ColorKeyKind kind, bool gridded) const { - // Figure out the Legend Pixel Size + // Compute legend dimensions (same formula as annotateIPFImage uses) const float fontPtSize = static_cast(canvasDim) / 24.0f; - const std::vector margins = {fontPtSize * 3, // Top - static_cast(canvasDim / 7.0f), // Right - fontPtSize * 2, // Bottom - static_cast(canvasDim / 7.0f)}; // Left - - int legendHeight = canvasDim - margins[0] - margins[2]; - int legendWidth = canvasDim - margins[1] - margins[3]; - + const std::vector margins = {fontPtSize * 3, static_cast(canvasDim / 7.0f), fontPtSize * 2, static_cast(canvasDim / 7.0f)}; + int legendHeight = canvasDim - static_cast(margins[0]) - static_cast(margins[2]); + int legendWidth = canvasDim - static_cast(margins[1]) - static_cast(margins[3]); if(legendHeight > legendWidth) { legendHeight = legendWidth; @@ -972,64 +1133,18 @@ ebsdlib::UInt8ArrayType::Pointer TrigonalOps::generateIPFTriangleLegend(int canv { legendWidth = legendHeight; } - int pageHeight = canvasDim; - int pageWidth = canvasDim; - int halfWidth = legendWidth / 2; - int halfHeight = legendHeight / 2; - std::array figureOrigin = {margins[3], margins[0] * 1.33F}; - if(!generateEntirePlane) + ebsdlib::IColorKey::Pointer key = keyForKind(kind); + if(gridded) { - figureOrigin[0] = -halfWidth * 0.25; - figureOrigin[1] = 0.0F - halfHeight * .5; + key = std::make_shared(key, 1.0); } - std::array figureCenter = {figureOrigin[0] + halfWidth, figureOrigin[1] + halfHeight}; - - ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane); - - // Create a Canvas to draw into - canvas_ity::canvas context(pageWidth, pageHeight); - - std::vector latoBold = ebsdlib::fonts::GetLatoBold(); - std::vector latoRegular = ebsdlib::fonts::GetLatoRegular(); - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize); - context.set_color(canvas_ity::fill_style, 0.0f, 0.0f, 0.0f, 1.0f); - canvas_ity::baseline_style const baselines[] = {canvas_ity::alphabetic, canvas_ity::top, canvas_ity::middle, canvas_ity::bottom, canvas_ity::hanging, canvas_ity::ideographic}; - context.text_baseline = baselines[0]; - - // Fill the whole background with white - context.move_to(0.0f, 0.0f); - context.line_to(static_cast(pageWidth), 0.0f); - context.line_to(static_cast(pageWidth), static_cast(pageHeight)); - context.line_to(0.0f, static_cast(pageHeight)); - context.line_to(0.0f, 0.0f); - context.close_path(); - context.set_color(canvas_ity::fill_style, 1.0f, 1.0f, 1.0f, 1.0f); - context.fill(); - - // Convert from ARGB to RGBA which is what canvas_itk wants - image = ebsdlib::ConvertColorOrder(image.get(), legendHeight); - - // We need to mirror across the X Axis because the image was drawn with +Y pointing down - image = ebsdlib::MirrorImage(image.get(), legendHeight); - - context.draw_image(image->getPointer(0), legendWidth, legendHeight, legendWidth * image->getNumberOfComponents(), figureOrigin[0], figureOrigin[1], static_cast(legendWidth), - static_cast(legendHeight)); - - // Draw Title of Legend - context.set_font(latoBold.data(), static_cast(latoBold.size()), fontPtSize * 1.5); - ebsdlib::WriteText(context, getSymmetryName(), {margins[0], static_cast(fontPtSize * 1.5)}, fontPtSize * 1.5); - - context.set_font(latoRegular.data(), static_cast(latoRegular.size()), fontPtSize); - DrawFullCircleAnnotations(context, canvasDim, fontPtSize, margins, figureOrigin, figureCenter, generateEntirePlane); - // Fetch the rendered RGBA pixels from the entire canvas. - ebsdlib::UInt8ArrayType::Pointer rgbaCanvasImage = ebsdlib::UInt8ArrayType::CreateArray(pageHeight * pageWidth, {4ULL}, "Triangle Legend", true); - // std::vector rgbaCanvasImage(static_cast(pageHeight * pageWidth * 4)); - context.get_image_data(rgbaCanvasImage->getPointer(0), pageWidth, pageHeight, pageWidth * 4, 0, 0); + // Generate the colored SST triangle image (ARGB) + ebsdlib::UInt8ArrayType::Pointer image = CreateIPFLegend(this, legendHeight, generateEntirePlane, key.get()); - rgbaCanvasImage = ebsdlib::RemoveAlphaChannel(rgbaCanvasImage.get()); - return rgbaCanvasImage; + // Annotate with title and Miller index labels + return annotateIPFImage(image, legendHeight, canvasDim, getSymmetryName(), generateEntirePlane, false, conv); } // ----------------------------------------------------------------------------- diff --git a/Source/EbsdLib/LaueOps/TrigonalOps.h b/Source/EbsdLib/LaueOps/TrigonalOps.h index c59a0dbb..eb32b43c 100644 --- a/Source/EbsdLib/LaueOps/TrigonalOps.h +++ b/Source/EbsdLib/LaueOps/TrigonalOps.h @@ -200,7 +200,8 @@ class EbsdLib_EXPORT TrigonalOps : public LaueOps double getF1spt(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; double getF7(const QuatD& q1, const QuatD& q2, double LD[3], bool maxSF) const override; - void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3) const override; + void generateSphereCoordsFromEulers(ebsdlib::FloatArrayType* eulers, ebsdlib::FloatArrayType* c1, ebsdlib::FloatArrayType* c2, ebsdlib::FloatArrayType* c3, + ebsdlib::HexConvention conv) const override; /** * @brief @@ -216,7 +217,7 @@ class EbsdLib_EXPORT TrigonalOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double* eulers, double* refDir, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateIPFColor Generates an ARGB Color from a Euler Angle and Reference Direction @@ -229,7 +230,7 @@ class EbsdLib_EXPORT TrigonalOps : public LaueOps * @param convertDegrees Are the input angles in Degrees * @return Returns the ARGB Quadruplet ebsdlib::Rgb */ - ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees) const override; + ebsdlib::Rgb generateIPFColor(double e0, double e1, double phi2, double dir0, double dir1, double dir2, bool convertDegrees, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL) const override; /** * @brief generateRodriguesColor Generates an RGB Color from a Rodrigues Vector @@ -255,13 +256,22 @@ class EbsdLib_EXPORT TrigonalOps : public LaueOps * @brief Returns the names for each of the three standard pole figures that are generated. For example *<001>, <011> and <111> for a cubic system */ - std::array getDefaultPoleFigureNames() const override; + std::array getDefaultPoleFigureNames(ebsdlib::HexConvention conv) const override; /** * @brief generateStandardTriangle Generates an RGBA array that is a color "Standard" IPF Triangle Legend used for IPF Color Maps. * @return */ - ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane) const override; + ebsdlib::UInt8ArrayType::Pointer generateIPFTriangleLegend(int imageDim, bool generateEntirePlane, ebsdlib::HexConvention conv, ebsdlib::ColorKeyKind kind = ebsdlib::ColorKeyKind::TSL, + bool gridded = false) const override; + + bool mapPixelToSphereSST(int xPixel, int yPixel, int imageDim, std::array& sphereDir) const override; + + void drawIPFAnnotations(canvas_ity::canvas& context, int canvasDim, float fontPtSize, const std::vector& margins, std::array figureOrigin, std::array figureCenter, + bool drawFullCircle, ebsdlib::HexConvention conv) const override; + + std::array adjustFigureOrigin(std::array figureOrigin, int legendWidth, int legendHeight, const std::vector& margins, float fontPtSize, + bool generateEntirePlane) const override; /** * @brief Returns if the given Quaternion is within the Rodrigues Fundamental Zone (RFZ) @@ -277,8 +287,6 @@ class EbsdLib_EXPORT TrigonalOps : public LaueOps */ bool isInsideFZ(const RodriguesDType& rod) const override; -protected: -public: TrigonalOps(const TrigonalOps&) = delete; // Copy Constructor Not Implemented TrigonalOps(TrigonalOps&&) = delete; // Move Constructor Not Implemented TrigonalOps& operator=(const TrigonalOps&) = delete; // Copy Assignment Not Implemented diff --git a/Source/EbsdLib/SourceList.cmake b/Source/EbsdLib/SourceList.cmake index 14b71b17..5713629f 100644 --- a/Source/EbsdLib/SourceList.cmake +++ b/Source/EbsdLib/SourceList.cmake @@ -145,8 +145,9 @@ add_library(${PROJECT_NAME}::${PROJECT_NAME} ALIAS ${PROJECT_NAME}) # If there are additional include directories that are needed for this plugin # you can use the target_include_directories(.....) cmake call target_include_directories(${PROJECT_NAME} - PRIVATE - "${EbsdLibProj_SOURCE_DIR}/3rdParty/canvas_ity/src" + PUBLIC + $ + $ ) if(EbsdLib_INSTALL_FILES) install(FILES diff --git a/Source/EbsdLib/Texture/StatsGen.hpp b/Source/EbsdLib/Texture/StatsGen.hpp index 9bde527e..6c8394cc 100644 --- a/Source/EbsdLib/Texture/StatsGen.hpp +++ b/Source/EbsdLib/Texture/StatsGen.hpp @@ -45,6 +45,7 @@ #include "EbsdLib/Core/EbsdLibConstants.h" #include "EbsdLib/EbsdLib.h" #include "EbsdLib/LaueOps/LaueOps.h" +#include "EbsdLib/LaueOps/OrthoRhombicOps.h" #include "EbsdLib/Math/EbsdLibMath.h" #include "EbsdLib/Math/EbsdLibRandom.h" #include "EbsdLib/Texture/Texture.hpp" @@ -239,38 +240,40 @@ class StatsGen /** * @brief This method will generate ODF data for 3 scatter plots which are the * <001>, <011> and <111> directions. - * @param odf Pointer to ODF bin data which has been sized to CubicOps::k_OdfSize - * @param eulers Euler angles to be generated. This memory must already be preallocated. - * @param npoints The number of points for the Scatter Plot which is at least the number of elements used in the allocation of the various output arrays. + * @param odf ODF bin data which has been sized + * @param numSamplePoints + * @return Euler angles that are generated. */ - template - static int GenODFPlotData(const ContainerType& odf, T* eulers, size_t npoints) + template + static EulerContainerType GenODFPlotData(const OdfContainerType& odf, size_t numSamplePoints) { - std::random_device randomDevice; // Will be used to obtain a seed for the random number engine + EulerContainerType eulers(numSamplePoints * 3); + + std::random_device randomDevice; // Will be used to get a seed for the random number engine std::mt19937_64 generator(randomDevice()); // Standard mersenne_twister_engine seeded with rd() std::mt19937_64::result_type seed = static_cast(std::chrono::steady_clock::now().time_since_epoch().count()); generator.seed(seed); std::uniform_real_distribution<> distribution(0.0, 1.0); + std::array randx3; - int err = 0; int choose = 0; - T totaldensity; + T totalDensity; T random, density; LaueOpsType ops; T td1; - for(size_t i = 0; i < npoints; i++) + for(size_t i = 0; i < numSamplePoints; i++) { random = distribution(generator); choose = 0; - totaldensity = 0; + totalDensity = 0; for(int j = 0; j < ops.getODFSize(); j++) { density = odf[j]; - td1 = totaldensity; - totaldensity = totaldensity + density; - if(random < totaldensity && random >= td1) + td1 = totalDensity; + totalDensity = totalDensity + density; + if(random < totalDensity && random >= td1) { choose = static_cast(j); break; @@ -284,7 +287,7 @@ class StatsGen eulers[3 * i + 1] = eu[1]; eulers[3 * i + 2] = eu[2]; } - return err; + return std::move(eulers); } #if 0 @@ -435,18 +438,6 @@ class StatsGen * type is a std::vector conforming class type that holds the data. * std::vector falls into this category. The input data for the * euler angles is in Columnar fashion instead of row major format. - * @param e1s The first euler angles (input) - * @param e2s The second euler angles (input) - * @param e3s The third euler angles (input) - * @param weights Array of weights values. (input) - * @param sigmas Array of sigma values. (input) - * @param xA X Values of the A axis PF Scatter plot (Output). This memory must already be preallocated. - * @param yA Y Values of the A axis PF Scatter plot (Output). This memory must already be preallocated. - * @param xB X Values of the B axis PF Scatter plot (Output). This memory must already be preallocated. - * @param yB Y Values of the B axis PF Scatter plot (Output). This memory must already be preallocated. - * @param xC X Values of the C axis PF Scatter plot (Output). This memory must already be preallocated. - * @param yC Y Values of the C axis PF Scatter plot (Output). This memory must already be preallocated. - * @param size The number of points for the Scatter Plot */ template static int GenAxisODFPlotData(T* odf, T* eulers, int npoints) diff --git a/Source/EbsdLib/Texture/Texture.hpp b/Source/EbsdLib/Texture/Texture.hpp index 68aa219f..4deb4b5f 100644 --- a/Source/EbsdLib/Texture/Texture.hpp +++ b/Source/EbsdLib/Texture/Texture.hpp @@ -44,14 +44,11 @@ #include "EbsdLib/Core/EbsdDataArray.hpp" #include "EbsdLib/EbsdLib.h" -#include "EbsdLib/LaueOps/CubicOps.h" -#include "EbsdLib/LaueOps/HexagonalOps.h" #include "EbsdLib/LaueOps/LaueOps.h" -#include "EbsdLib/LaueOps/OrthoRhombicOps.h" #include "EbsdLib/Math/EbsdLibMath.h" #include "EbsdLib/Math/EbsdLibRandom.h" +#include "EbsdLib/Orientation/Euler.hpp" #include "EbsdLib/Orientation/OrientationFwd.hpp" -#include "EbsdLib/Orientation/Rodrigues.hpp" namespace ebsdlib { @@ -66,10 +63,19 @@ class Texture public: virtual ~Texture() = default; + using ODFTableEntry = struct + { + ebsdlib::Euler euler; + double weight; + double sigma; + }; + + using ODFTableEntries = std::vector; + /** * @brief This will calculate ODF data based on an array of weights that are - * passed in and a Hexagonal Crystal Structure. This is templated on the container - * type that holds the data. Containers that adhere to the STL Vector API + * passed in and a Crystal Structure. This is templated on the container + * type, LaueOps, and type of data. Containers that adhere to the STL Vector API * should be usable. std::vector falls into this category. The input data for the * euler angles is in Columnar fashion instead of row major format. * @param e1s The first euler angles @@ -83,101 +89,109 @@ class Texture * @param numEntries (OUT) The TotalWeight value that is also calculated */ template - static void CalculateODFData(Container& e1s, Container& e2s, Container& e3s, Container& weights, Container& sigmas, bool normalize, Container& odf, size_t numEntries) + static Container CalculateODFData(const ODFTableEntries& odfTableEntries, bool normalize) { LaueOps ops; + + // The number of ODF Bins is hard set at 5 degrees. This is something hard set inside + // all the Laue classes. There is NO Changing this without a LOT of work std::array odfNumBins = ops.getOdfNumBins(); - odf.resize(ops.getODFSize()); - ebsdlib::Int32ArrayType::Pointer textureBins = ebsdlib::Int32ArrayType::CreateArray(numEntries, "TextureBins", true); - int32_t* TextureBins = textureBins->getPointer(0); - float addweight = 0; - float totaladdweight = 0; - float totalweight = float(ops.getODFSize()); + std::vector textureBins(odfTableEntries.size()); + + T addweight = 0; + T totalAddWeight = 0; + T totalWeight = T(ops.getODFSize()); int bin, addbin; int bin1, bin2, bin3; int addbin1, addbin2, addbin3; - float dist, fraction; - // Use double precision for the calculations - for(size_t i = 0; i < numEntries; i++) - { - RodriguesDType rod = EulerDType(e1s[i], e2s[i], e3s[i]).toRodrigues(); + T dist, fraction; - rod = ops.getODFFZRod(rod); + // Loop on each odfTableEntry and build up the ODF Bins that the Euler belongs to + for(size_t i = 0; i < odfTableEntries.size(); i++) + { + RodriguesDType rod = ops.getODFFZRod(odfTableEntries.at(i).euler.toRodrigues()); bin = ops.getOdfBin(rod); - TextureBins[i] = static_cast(bin); + textureBins[i] = bin; } - for(int i = 0; i < ops.getODFSize(); i++) - { - odf[i] = 0; - } - for(size_t i = 0; i < numEntries; i++) + // Create the ODF container and initialize all bins to ZERO + Container odf(ops.getODFSize(), 0.0); + + // For each entry in the table... + for(size_t i = 0; i < odfTableEntries.size(); i++) { - bin = TextureBins[i]; + const ODFTableEntry& odfTableEntry = odfTableEntries.at(i); + bin = textureBins[i]; // Get the histogram bin that the Euler is assigned to bin1 = bin % odfNumBins[0]; bin2 = static_cast((bin / odfNumBins[0]) % odfNumBins[1]); bin3 = bin / static_cast((odfNumBins[0] * odfNumBins[1])); - for(int j = static_cast(-sigmas[i]); j <= sigmas[i]; j++) + for(int j = static_cast(-odfTableEntry.sigma); j <= odfTableEntry.sigma; j++) { int jsqrd = j * j; - for(int k = static_cast(-sigmas[i]); k <= sigmas[i]; k++) + for(int k = static_cast(-odfTableEntry.sigma); k <= odfTableEntry.sigma; k++) { int ksqrd = k * k; - for(int l = static_cast(-sigmas[i]); l <= sigmas[i]; l++) + for(int l = static_cast(-odfTableEntry.sigma); l <= odfTableEntry.sigma; l++) { - int lsqrd = l * l; + addbin1 = bin1 + int(j); addbin2 = bin2 + int(k); addbin3 = bin3 + int(l); - int good = 1; + if(addbin1 < 0) { - good = 0; + continue; } if(addbin1 >= odfNumBins[0]) { - good = 0; + continue; } if(addbin2 < 0) { - good = 0; + continue; } if(addbin2 >= odfNumBins[1]) { - good = 0; + continue; } if(addbin3 < 0) { - good = 0; + continue; } if(addbin3 >= odfNumBins[2]) { - good = 0; + continue; } + + int lsqrd = l * l; addbin = static_cast((addbin3 * odfNumBins[0] * odfNumBins[1]) + (addbin2 * odfNumBins[0]) + (addbin1)); - dist = static_cast(std::pow(static_cast(jsqrd + ksqrd + lsqrd), 0.5)); - fraction = static_cast(1.0 - (double(dist / int(sigmas[i])) * double(dist / int(sigmas[i])))); - if(dist <= int(sigmas[i]) && good == 1) + dist = static_cast(std::pow(static_cast(jsqrd + ksqrd + lsqrd), 0.5)); + + double temp = dist / static_cast(odfTableEntry.sigma); + + fraction = static_cast(1.0 - (temp * temp)); + if(dist <= static_cast(odfTableEntry.sigma)) { - addweight = (weights[i] * fraction); - if(sigmas[i] == 0.0) + addweight = (odfTableEntry.weight * fraction); + if(odfTableEntry.sigma == 0.0) { - addweight = weights[i]; + addweight = odfTableEntry.weight; } odf[addbin] = odf[addbin] + addweight; - totaladdweight = totaladdweight + addweight; + totalAddWeight = totalAddWeight + addweight; } } } } } - // These next loops *look* like they can be parallelized but the arrays are not large enough + + // These next loops *look* like they can be parallelized, but the arrays are not large enough // to see any benefit so don't go down that road. std::transform is also slower than the // manual loops that are coded. - if(totaladdweight > totalweight) + if(totalAddWeight > totalWeight) { - float scale = (totaladdweight / totalweight); + float scale = (totalAddWeight / totalWeight); for(int i = 0; i < ops.getODFSize(); i++) { odf[i] = odf[i] / scale; @@ -185,8 +199,8 @@ class Texture } else { - float remainingweight = totalweight - totaladdweight; - float background = remainingweight / static_cast(ops.getODFSize()); + float remainingWeight = totalWeight - totalAddWeight; + float background = remainingWeight / static_cast(ops.getODFSize()); for(int i = 0; i < ops.getODFSize(); i++) { odf[i] += background; @@ -197,9 +211,11 @@ class Texture // Normalize the odf for(int i = 0; i < ops.getODFSize(); i++) { - odf[i] = odf[i] / totalweight; + odf[i] = odf[i] / totalWeight; } } + + return odf; } /** diff --git a/Source/EbsdLib/Utilities/ColorSpaceUtils.hpp b/Source/EbsdLib/Utilities/ColorSpaceUtils.hpp new file mode 100644 index 00000000..b70c6bd6 --- /dev/null +++ b/Source/EbsdLib/Utilities/ColorSpaceUtils.hpp @@ -0,0 +1,94 @@ +#pragma once + +#include "EbsdLib/EbsdLib.h" + +#include +#include +#include +#include + +namespace ebsdlib +{ +namespace color +{ + +/** + * @brief Convert HSL to RGB. All inputs and outputs in [0, 1]. + * @param h Hue in [0, 1) where 0=red, 1/3=green, 2/3=blue + * @param s Saturation in [0, 1] + * @param l Lightness in [0, 1] + * @return {r, g, b} each in [0, 1] + */ +inline std::array hslToRgb(double h, double s, double l) +{ + double c = (1.0 - std::abs(2.0 * l - 1.0)) * s; + double hp = h * 6.0; + double x = c * (1.0 - std::abs(std::fmod(hp, 2.0) - 1.0)); + double m = l - c / 2.0; + + double r1 = 0.0; + double g1 = 0.0; + double b1 = 0.0; + + if(hp < 1.0) + { + r1 = c; + g1 = x; + b1 = 0.0; + } + else if(hp < 2.0) + { + r1 = x; + g1 = c; + b1 = 0.0; + } + else if(hp < 3.0) + { + r1 = 0.0; + g1 = c; + b1 = x; + } + else if(hp < 4.0) + { + r1 = 0.0; + g1 = x; + b1 = c; + } + else if(hp < 5.0) + { + r1 = x; + g1 = 0.0; + b1 = c; + } + else + { + r1 = c; + g1 = 0.0; + b1 = x; + } + + return {std::clamp(r1 + m, 0.0, 1.0), std::clamp(g1 + m, 0.0, 1.0), std::clamp(b1 + m, 0.0, 1.0)}; +} + +/** + * @brief Convert HSL to HSV. All inputs and outputs in [0, 1]. + */ +inline std::array hslToHsv(double h, double s, double l) +{ + double l2 = 2.0 * l; + double s2 = s * ((l2 <= 1.0) ? l2 : (2.0 - l2)); + double v = (l2 + s2) / 2.0; + double sv = (l2 + s2 > 1e-12) ? (2.0 * s2 / (l2 + s2)) : 0.0; + return {h, sv, v}; +} + +/** + * @brief Convert RGB [0,1] to 8-bit [0,255] clamped. + */ +inline std::array rgbToBytes(double r, double g, double b) +{ + return {static_cast(std::clamp(r * 255.0, 0.0, 255.0)), static_cast(std::clamp(g * 255.0, 0.0, 255.0)), static_cast(std::clamp(b * 255.0, 0.0, 255.0))}; +} + +} // namespace color +} // namespace ebsdlib diff --git a/Source/EbsdLib/Utilities/FundamentalSectorGeometry.cpp b/Source/EbsdLib/Utilities/FundamentalSectorGeometry.cpp new file mode 100644 index 00000000..bf0a4180 --- /dev/null +++ b/Source/EbsdLib/Utilities/FundamentalSectorGeometry.cpp @@ -0,0 +1,845 @@ +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" + +#include +#include +#include +#include +#include + +namespace ebsdlib +{ + +// ----------------------------------------------------------------------- +// Constructor +// ----------------------------------------------------------------------- +FundamentalSectorGeometry::FundamentalSectorGeometry(std::vector boundaryNormals, std::vector vertices, std::string colorKeyMode, int32_t supergroupIndex) +: m_BoundaryNormals(std::move(boundaryNormals)) +, m_Vertices(std::move(vertices)) +, m_ColorKeyMode(std::move(colorKeyMode)) +, m_SupergroupIndex(supergroupIndex) +{ + computeBarycenter(); + precomputeAzimuthalCorrection(); +} + +// ----------------------------------------------------------------------- +// Accessors +// ----------------------------------------------------------------------- +const FundamentalSectorGeometry::Vec3& FundamentalSectorGeometry::barycenter() const +{ + return m_Barycenter; +} + +const std::vector& FundamentalSectorGeometry::vertices() const +{ + return m_Vertices; +} + +const std::vector& FundamentalSectorGeometry::boundaryNormals() const +{ + return m_BoundaryNormals; +} + +const std::string& FundamentalSectorGeometry::colorKeyMode() const +{ + return m_ColorKeyMode; +} + +int32_t FundamentalSectorGeometry::supergroupIndex() const +{ + return m_SupergroupIndex; +} + +// ----------------------------------------------------------------------- +// Vector math helpers +// ----------------------------------------------------------------------- +FundamentalSectorGeometry::Vec3 FundamentalSectorGeometry::vecNormalize(const Vec3& v) +{ + double len = std::sqrt(v[0] * v[0] + v[1] * v[1] + v[2] * v[2]); + if(len < 1.0e-15) + { + return {0.0, 0.0, 0.0}; + } + return {v[0] / len, v[1] / len, v[2] / len}; +} + +FundamentalSectorGeometry::Vec3 FundamentalSectorGeometry::vecCross(const Vec3& a, const Vec3& b) +{ + return {a[1] * b[2] - a[2] * b[1], a[2] * b[0] - a[0] * b[2], a[0] * b[1] - a[1] * b[0]}; +} + +double FundamentalSectorGeometry::vecDot(const Vec3& a, const Vec3& b) +{ + return a[0] * b[0] + a[1] * b[1] + a[2] * b[2]; +} + +double FundamentalSectorGeometry::vecAngle(const Vec3& a, const Vec3& b) +{ + double d = vecDot(a, b); + d = std::clamp(d, -1.0, 1.0); + return std::acos(d); +} + +FundamentalSectorGeometry::Vec3 FundamentalSectorGeometry::vecNeg(const Vec3& v) +{ + return {-v[0], -v[1], -v[2]}; +} + +// ----------------------------------------------------------------------- +// computeBarycenter +// ----------------------------------------------------------------------- +void FundamentalSectorGeometry::computeBarycenter() +{ + if(m_Vertices.empty()) + { + // For triclinic: use the north pole as the center of the hemisphere + m_Barycenter = {0.0, 0.0, 1.0}; + return; + } + + Vec3 sum = {0.0, 0.0, 0.0}; + for(const auto& v : m_Vertices) + { + sum[0] += v[0]; + sum[1] += v[1]; + sum[2] += v[2]; + } + m_Barycenter = vecNormalize(sum); +} + +// ----------------------------------------------------------------------- +// isInside +// ----------------------------------------------------------------------- +bool FundamentalSectorGeometry::isInside(const Vec3& h) const +{ + for(const auto& normal : m_BoundaryNormals) + { + if(vecDot(h, normal) < -1.0e-10) + { + return false; + } + } + return true; +} + +// ----------------------------------------------------------------------- +// polarCoordinates +// ----------------------------------------------------------------------- +std::pair FundamentalSectorGeometry::polarCoordinates(const Vec3& h) const +{ + constexpr double k_Pi = 3.14159265358979323846; + + // Singularity guard: if h is at the barycenter + // Convention: radius=1 at center, 0 at boundary + double angleToCenter = vecAngle(h, m_Barycenter); + if(angleToCenter < 1.0e-10) + { + return {1.0, 0.0}; + } + + // ------------------------------------------------------------------- + // RADIUS: normalized distance from center to boundary + // ------------------------------------------------------------------- + // Algorithm (from orix/MTEX polarCoordinates): + // The great circle plane containing both h and center has normal + // gcN = normalize(v.cross(center)). + // For each boundary normal N_j, the intersection is: + // bp = normalize(gcN.cross(N_j)) + // The radius is: min over j of angle(-v, bp) / angle(-center, bp) + // + // This gives radius=0 at center, radius=1 at boundary, + // and increases monotonically along any radial direction. + // ------------------------------------------------------------------- + Vec3 hNeg = vecNeg(h); + Vec3 centerNeg = vecNeg(m_Barycenter); + + // Normal to the great circle through h and center + // NOTE: order is h cross center (same as orix: v.cross(center)) + Vec3 gcNormal = vecNormalize(vecCross(h, m_Barycenter)); + + double radius = std::numeric_limits::infinity(); + + for(const auto& normal : m_BoundaryNormals) + { + // Intersection of great circles: gcN cross N_j + Vec3 bp = vecNormalize(vecCross(gcNormal, normal)); + + // Compute ratio using antipodal distances + // This naturally selects the correct intersection point + double distNegH = vecAngle(hNeg, bp); + double distNegCenter = vecAngle(centerNeg, bp); + + double ratio; + if(distNegCenter < 1.0e-10) + { + ratio = 1.0; + } + else + { + ratio = distNegH / distNegCenter; + } + + if(std::isnan(ratio) || std::isinf(ratio)) + { + ratio = 1.0; + } + + radius = std::min(radius, ratio); + } + + if(std::isinf(radius)) + { + radius = 1.0; + } + radius = std::clamp(radius, 0.0, 1.0); + + // ------------------------------------------------------------------- + // AZIMUTHAL ANGLE: angle in the tangent plane at the barycenter + // ------------------------------------------------------------------- + // Reference direction: project z-axis onto tangent plane at barycenter + Vec3 ref = {0.0, 0.0, 1.0}; + // If barycenter is very close to z-axis, use x-axis instead + if(std::abs(vecDot(ref, m_Barycenter)) > 0.99) + { + ref = {1.0, 0.0, 0.0}; + } + + // Project ref onto tangent plane at barycenter: rx = ref - dot(ref, center) * center + double refDotCenter = vecDot(ref, m_Barycenter); + Vec3 rx = {ref[0] - refDotCenter * m_Barycenter[0], ref[1] - refDotCenter * m_Barycenter[1], ref[2] - refDotCenter * m_Barycenter[2]}; + rx = vecNormalize(rx); + + // ry = center x rx (right-hand rule in tangent plane) + Vec3 ry = vecNormalize(vecCross(m_Barycenter, rx)); + + // Direction from center to h in tangent plane (not normalized -- fine for atan2) + double hDotCenter = vecDot(h, m_Barycenter); + Vec3 dv = {h[0] - hDotCenter * m_Barycenter[0], h[1] - hDotCenter * m_Barycenter[1], h[2] - hDotCenter * m_Barycenter[2]}; + + double rho = std::atan2(vecDot(ry, dv), vecDot(rx, dv)); + rho = std::fmod(rho + 2.0 * k_Pi, 2.0 * k_Pi); // ensure [0, 2*pi) + + return {radius, rho}; +} + +// ----------------------------------------------------------------------- +// precomputeAzimuthalCorrection +// +// Builds a lookup table that redistributes the azimuthal angle so that: +// 1. Each vertex of the sector gets an equal share of the hue circle +// 2. The angular distribution is weighted by the boundary distance d(rho), +// which smooths the transition where the "nearest boundary" switches +// +// This implements the paper's Appendix A.1: the hue is the cumulative +// integral of v(rho) = d(rho), normalized so that the total integral +// maps to [0, 2*pi]. +// +// For sectors with 0 or 1 vertex, the identity mapping is used. +// ----------------------------------------------------------------------- +void FundamentalSectorGeometry::precomputeAzimuthalCorrection() +{ + constexpr double k_Pi = 3.14159265358979323846; + constexpr double k_TwoPi = 2.0 * k_Pi; + + if(m_Vertices.size() < 2 || m_BoundaryNormals.empty()) + { + // No correction possible -- use identity mapping + for(size_t i = 0; i < k_AzimuthalTableSize; i++) + { + m_AzimuthalCorrectionTable[i] = static_cast(i) / static_cast(k_AzimuthalTableSize) * k_TwoPi; + } + return; + } + + // Step 1: Sample the boundary distance d(rho) at each azimuthal angle. + // For each sampled angle, rotate a reference direction around the barycenter + // by that angle and compute the radial distance to the boundary. + // + // Instead of doing full polarCoordinates (expensive), we directly compute + // the boundary distance: for each angle, create a direction at a small + // offset from the barycenter, then measure how far the boundary is. + + // Reference direction in the tangent plane at the barycenter + Vec3 ref = {0.0, 0.0, 1.0}; + if(std::abs(vecDot(ref, m_Barycenter)) > 0.99) + { + ref = {1.0, 0.0, 0.0}; + } + double refDotCenter = vecDot(ref, m_Barycenter); + Vec3 rx = vecNormalize({ref[0] - refDotCenter * m_Barycenter[0], ref[1] - refDotCenter * m_Barycenter[1], ref[2] - refDotCenter * m_Barycenter[2]}); + Vec3 ry = vecNormalize(vecCross(m_Barycenter, rx)); + + // For each sampled angle, compute the angular distance from barycenter to boundary + std::array boundaryDist = {}; + + for(size_t i = 0; i < k_AzimuthalTableSize; i++) + { + double angle = static_cast(i) / static_cast(k_AzimuthalTableSize) * k_TwoPi; + double cosA = std::cos(angle); + double sinA = std::sin(angle); + + // Direction in the tangent plane at this azimuth + Vec3 tangentDir = {cosA * rx[0] + sinA * ry[0], cosA * rx[1] + sinA * ry[1], cosA * rx[2] + sinA * ry[2]}; + + // Create a test direction slightly away from barycenter in this tangent direction + // We use a small angle offset (e.g., 0.01 radians) to stay in the linear regime + constexpr double k_SmallAngle = 0.01; + Vec3 testDir = vecNormalize({m_Barycenter[0] + k_SmallAngle * tangentDir[0], m_Barycenter[1] + k_SmallAngle * tangentDir[1], m_Barycenter[2] + k_SmallAngle * tangentDir[2]}); + + // Compute the boundary distance at this azimuth using the same algorithm as polarCoordinates + Vec3 gcNormal = vecNormalize(vecCross(m_Barycenter, testDir)); + double distMax = k_Pi; // default large distance + + // Handle degenerate gcNormal (testDir ~= barycenter) + double gcLen = std::sqrt(gcNormal[0] * gcNormal[0] + gcNormal[1] * gcNormal[1] + gcNormal[2] * gcNormal[2]); + if(gcLen < 1.0e-10) + { + boundaryDist[i] = 1.0; + continue; + } + + for(const auto& normal : m_BoundaryNormals) + { + Vec3 bp = vecNormalize(vecCross(normal, gcNormal)); + // Choose the intersection on the side of the barycenter + if(vecDot(testDir, bp) < 0.0) + { + bp = vecNeg(bp); + } + double d = vecAngle(m_Barycenter, bp); + if(d > 1.0e-10) + { + distMax = std::min(distMax, d); + } + } + boundaryDist[i] = distMax; + } + + // Step 2: Compute vertex azimuths and assign equal hue sectors + size_t nVerts = m_Vertices.size(); + + // Compute the azimuthal angle of each vertex relative to the barycenter + std::vector vertexAngles(nVerts); + for(size_t v = 0; v < nVerts; v++) + { + double hDotCenter = vecDot(m_Vertices[v], m_Barycenter); + Vec3 dv = {m_Vertices[v][0] - hDotCenter * m_Barycenter[0], m_Vertices[v][1] - hDotCenter * m_Barycenter[1], m_Vertices[v][2] - hDotCenter * m_Barycenter[2]}; + vertexAngles[v] = std::fmod(std::atan2(vecDot(ry, dv), vecDot(rx, dv)) + k_TwoPi, k_TwoPi); + } + + // Sort vertex angles + std::vector sortIdx(nVerts); + std::iota(sortIdx.begin(), sortIdx.end(), 0); + std::sort(sortIdx.begin(), sortIdx.end(), [&](size_t a, size_t b) { return vertexAngles[a] < vertexAngles[b]; }); + std::vector sortedAngles(nVerts); + for(size_t i = 0; i < nVerts; i++) + { + sortedAngles[i] = vertexAngles[sortIdx[i]]; + } + + // Step 3: Build the weighted CDF with boundary distance weighting + // Weight each angular sample by d(rho) -- this is the core of the paper's + // hue speed function. Directions where the boundary is farther get more hue space. + std::array weights = {}; + for(size_t i = 0; i < k_AzimuthalTableSize; i++) + { + weights[i] = boundaryDist[i]; // weight by boundary distance + } + + // Normalize within each vertex sector so each sector gets exactly (2*pi / nVerts) + double sectorSize = k_TwoPi / static_cast(nVerts); + for(size_t s = 0; s < nVerts; s++) + { + double sectorStart = sortedAngles[s]; + double sectorEnd = (s + 1 < nVerts) ? sortedAngles[s + 1] : sortedAngles[0] + k_TwoPi; + + // Find indices in this sector + double sectorSum = 0.0; + size_t count = 0; + for(size_t i = 0; i < k_AzimuthalTableSize; i++) + { + double angle = static_cast(i) / static_cast(k_AzimuthalTableSize) * k_TwoPi; + // Check if angle is in this sector (handle wrap-around) + bool inSector = false; + if(sectorEnd <= k_TwoPi) + { + inSector = (angle >= sectorStart && angle < sectorEnd); + } + else + { + inSector = (angle >= sectorStart || angle < std::fmod(sectorEnd, k_TwoPi)); + } + if(inSector) + { + sectorSum += weights[i]; + count++; + } + } + + // Normalize this sector's weights so they sum to sectorSize + if(sectorSum > 1.0e-10 && count > 0) + { + double scale = sectorSize / sectorSum; + for(size_t i = 0; i < k_AzimuthalTableSize; i++) + { + double angle = static_cast(i) / static_cast(k_AzimuthalTableSize) * k_TwoPi; + bool inSector = false; + if(sectorEnd <= k_TwoPi) + { + inSector = (angle >= sectorStart && angle < sectorEnd); + } + else + { + inSector = (angle >= sectorStart || angle < std::fmod(sectorEnd, k_TwoPi)); + } + if(inSector) + { + weights[i] *= scale; + } + } + } + } + + // Step 4: Cumulative sum -> correction table + // The CDF maps raw angle to corrected angle + double cumSum = 0.0; + for(size_t i = 0; i < k_AzimuthalTableSize; i++) + { + cumSum += weights[i]; + m_AzimuthalCorrectionTable[i] = cumSum; + } + + // Normalize so the total is exactly 2*pi + if(cumSum > 1.0e-10) + { + double scale = k_TwoPi / cumSum; + for(size_t i = 0; i < k_AzimuthalTableSize; i++) + { + m_AzimuthalCorrectionTable[i] *= scale; + } + } +} + +// ----------------------------------------------------------------------- +// correctAzimuthalAngle -- linear interpolation into precomputed table +// ----------------------------------------------------------------------- +double FundamentalSectorGeometry::correctAzimuthalAngle(double rhoRaw) const +{ + constexpr double k_TwoPi = 2.0 * 3.14159265358979323846; + // Map rhoRaw into [0, 2*pi) + double rho = std::fmod(rhoRaw, k_TwoPi); + if(rho < 0.0) + { + rho += k_TwoPi; + } + + // Fractional index into the table + double fIdx = rho / k_TwoPi * static_cast(k_AzimuthalTableSize); + size_t idx0 = static_cast(fIdx); + double frac = fIdx - static_cast(idx0); + + if(idx0 >= k_AzimuthalTableSize - 1) + { + return m_AzimuthalCorrectionTable[k_AzimuthalTableSize - 1]; + } + + // Linear interpolation + return m_AzimuthalCorrectionTable[idx0] * (1.0 - frac) + m_AzimuthalCorrectionTable[idx0 + 1] * frac; +} + +// ===================================================================== +// Static factory methods for each Laue group +// ===================================================================== +// +// Coordinate system: h = (sin(chi)*cos(eta), sin(chi)*sin(eta), cos(chi)) +// chi = acos(z) -- polar angle from z-axis (north pole) +// eta = atan2(y, x) -- azimuthal angle in xy-plane +// +// Boundary normals N define the interior as: dot(h, N) >= 0 for all N. +// For a meridian boundary at eta = alpha: +// - The plane contains z-axis and direction [cos(alpha), sin(alpha), 0] +// - Inward normal (toward smaller eta): [sin(alpha), -cos(alpha), 0] +// - Inward normal (toward larger eta): [-sin(alpha), cos(alpha), 0] + +// ----------------------------------------------------------------------- +// cubicHigh: m-3m +// SST: eta in [0, 45deg], chi in [0, chiMax(eta)] +// chiMax(eta) = acos(sqrt(1/(2+tan^2(eta)))) +// +// Vertices (on unit sphere): +// [001] = {0, 0, 1} at eta=0, chi=0 +// [101] = {s2, 0, s2} at eta=0, chi=45deg +// [111] = {s3, s3, s3} at eta=45deg, chi=acos(1/sqrt3) +// +// Boundaries: +// 1. eta >= 0 => y >= 0, normal = [0, 1, 0] +// 2. eta <= 45 => normal = [sin45, -cos45, 0] = [s2, -s2, 0] +// 3. Hypotenuse: great circle from [101] to [111] +// cross([1,0,1], [1,1,1]) = [-1, 0, 1] => normalized: [-s2, 0, s2] +// Verify: dot([0,0,1], [-s2,0,s2]) = s2 > 0. [001] inside. Good. +// ----------------------------------------------------------------------- +FundamentalSectorGeometry FundamentalSectorGeometry::cubicHigh() +{ + double s2 = 1.0 / std::sqrt(2.0); + double s3 = 1.0 / std::sqrt(3.0); + return FundamentalSectorGeometry( + // Boundary normals (dot(h, N) >= 0 defines interior) + {{0.0, 1.0, 0.0}, // y >= 0: eta >= 0 boundary + {s2, -s2, 0.0}, // eta <= 45deg boundary + {-s2, 0.0, s2}}, // hypotenuse: great circle [101]-[111] + // Vertices + {{0.0, 0.0, 1.0}, // [001] + {s2, 0.0, s2}, // [101] + {s3, s3, s3}}, // [111] + "standard"); +} + +// ----------------------------------------------------------------------- +// cubicLow: m-3 +// SST: eta in [0, 90deg], chi in [0, chiMax(eta)] +// Same chiMax formula as cubicHigh, but eta extends to 90deg. +// +// Vertices: +// [001] = {0, 0, 1} at eta=0, chi=0 +// [101] = {s2, 0, s2} at eta=0, chi=45deg (chiMax at eta=0) +// [011] = {0, s2, s2} at eta=90, chi=45deg (chiMax at eta=90) +// [111] = {s3, s3, s3} at eta=45deg, chi=acos(1/sqrt3) (peak of boundary curve) +// +// The curved boundary from [101] to [011] through [111] is NOT a single great circle. +// We approximate it with the great circle from [101] to [011]: +// cross([1,0,1], [0,1,1]) = [-1, -1, 1] => normalized: [-1,-1,1]/sqrt3 +// Verify: dot([0,0,1], [-1,-1,1]/sqrt3) = 1/sqrt3 > 0. [001] inside. Good. +// dot([1,1,1]/sqrt3, [-1,-1,1]/sqrt3) = (-1-1+1)/3 = -1/3 < 0. [111] outside! Bad. +// +// Instead, split into two great circle arcs: [101]-[111] and [111]-[011]. +// Arc [101]-[111]: normal [-s2, 0, s2] (same as cubicHigh hypotenuse) +// Arc [111]-[011]: cross([1,1,1], [0,1,1]) = [1*1-1*1, 1*0-1*1, 1*1-1*0] = [0,-1,1] +// normalized: [0,-s2,s2] +// Verify: dot([0,0,1], [0,-s2,s2]) = s2 > 0. [001] inside. Good. +// +// But using both normals would over-constrain the sector. We need to be careful: +// The actual boundary is curved, and points near [111] may be "above" both great circles. +// Since [111] is ON both arcs (it's the shared vertex), this should work. +// The two great circle arcs define a convex region that is contained in the actual SST. +// This is a conservative approximation. +// +// Boundaries: +// 1. eta >= 0 => y >= 0, normal = [0, 1, 0] +// 2. eta <= 90 => x >= 0, normal = [1, 0, 0] +// 3. Arc [101]-[111]: normal = [-s2, 0, s2] +// 4. Arc [111]-[011]: normal = [0, -s2, s2] +// ----------------------------------------------------------------------- +FundamentalSectorGeometry FundamentalSectorGeometry::cubicLow() +{ + double s2 = 1.0 / std::sqrt(2.0); + double s3 = 1.0 / std::sqrt(3.0); + return FundamentalSectorGeometry( + // Boundary normals + {{0.0, 1.0, 0.0}, // y >= 0: eta >= 0 + {1.0, 0.0, 0.0}, // x >= 0: eta <= 90deg + {-s2, 0.0, s2}, // hypotenuse arc [101]-[111] + {0.0, -s2, s2}}, // hypotenuse arc [111]-[011] + // Vertices + {{0.0, 0.0, 1.0}, // [001] + {s2, 0.0, s2}, // [101] + {0.0, s2, s2}, // [011] + {s3, s3, s3}}, // [111] + "extended", + 1 // supergroup = CubicHigh + ); +} + +// ----------------------------------------------------------------------- +// hexagonalHigh: 6/mmm +// SST: eta in [0, 30deg], chi in [0, 90deg] +// Vertices: [0001], [10-10] (at eta=0,chi=90), [2-1-10]/[11-20] (at eta=30,chi=90) +// In Cartesian with z up: +// [0001] = [0, 0, 1] +// eta=0, chi=90 => [1, 0, 0] +// eta=30, chi=90 => [cos30, sin30, 0] = [sqrt3/2, 1/2, 0] +// Boundaries: +// 1. eta >= 0 => y >= 0, normal = [0, 1, 0] +// 2. eta <= 30deg => normal pointing inward from the eta=30 meridian plane +// Meridian at eta=30: plane through z and direction [cos30, sin30, 0] +// Normal to this plane (pointing toward eta < 30): [sin30, -cos30, 0] = [1/2, -sqrt3/2, 0] +// Verify: dot([1,0,0], [1/2,-sqrt3/2,0]) = 1/2 > 0. [eta=0] is inside. Good. +// 3. chi >= 0 is automatic on upper hemisphere (but we also need chi <= 90) +// chi <= 90 => z >= 0, but points at chi=90 have z=0 which is on the boundary. +// Actually, we don't need an explicit normal for z >= 0 since +// the sector extends to the equator. But we need it to exclude the southern hemisphere. +// Normal = [0, 0, 1] would only allow z > 0 (actually z >= 0 with our tolerance). +// Let's not add it; the SST naturally lives in the upper hemisphere. +// ----------------------------------------------------------------------- +FundamentalSectorGeometry FundamentalSectorGeometry::hexagonalHigh() +{ + double s3h = std::sqrt(3.0) / 2.0; // cos(30) + return FundamentalSectorGeometry( + // Boundary normals + {{0.0, 1.0, 0.0}, // y >= 0: eta >= 0 + {0.5, -s3h, 0.0}}, // eta <= 30deg + // Vertices + {{0.0, 0.0, 1.0}, // [0001] + {1.0, 0.0, 0.0}, // [10-10] at eta=0, chi=90 + {s3h, 0.5, 0.0}}, // [2-1-10] at eta=30, chi=90 + "standard"); +} + +// ----------------------------------------------------------------------- +// hexagonalLow: 6/m +// SST: eta in [0, 60deg], chi in [0, 90deg] +// Vertices: [0001], [10-10] (eta=0, chi=90), [eta=60, chi=90] +// eta=60, chi=90 => [cos60, sin60, 0] = [1/2, sqrt3/2, 0] +// Boundaries: +// 1. eta >= 0 => normal = [0, 1, 0] +// 2. eta <= 60 => normal from the eta=60 meridian plane +// [sin60, -cos60, 0] = [sqrt3/2, -1/2, 0] +// Verify: dot([1,0,0], [sqrt3/2,-1/2,0]) = sqrt3/2 > 0. Inside. Good. +// ----------------------------------------------------------------------- +FundamentalSectorGeometry FundamentalSectorGeometry::hexagonalLow() +{ + double s3h = std::sqrt(3.0) / 2.0; // sin(60) = cos(30) + return FundamentalSectorGeometry( + // Boundary normals + {{0.0, 1.0, 0.0}, // y >= 0: eta >= 0 + {s3h, -0.5, 0.0}}, // eta <= 60deg + // Vertices + {{0.0, 0.0, 1.0}, // [0001] + {1.0, 0.0, 0.0}, // at eta=0, chi=90 + {0.5, s3h, 0.0}}, // at eta=60, chi=90 + "extended", + 0 // supergroup = HexagonalHigh + ); +} + +// ----------------------------------------------------------------------- +// tetragonalHigh: 4/mmm +// SST: eta in [0, 45deg], chi in [0, 90deg] +// Vertices: [001], [100] (eta=0,chi=90), [110] (eta=45,chi=90) +// Boundaries: +// 1. eta >= 0 => normal = [0, 1, 0] +// 2. eta <= 45 => normal = [sin45, -cos45, 0] = [1/sqrt2, -1/sqrt2, 0] +// Verify: dot([1,0,0], [s2,-s2,0]) = s2 > 0. Inside. Good. +// ----------------------------------------------------------------------- +FundamentalSectorGeometry FundamentalSectorGeometry::tetragonalHigh() +{ + double s2 = 1.0 / std::sqrt(2.0); + return FundamentalSectorGeometry( + // Boundary normals + {{0.0, 1.0, 0.0}, // y >= 0: eta >= 0 + {s2, -s2, 0.0}}, // eta <= 45deg + // Vertices + {{0.0, 0.0, 1.0}, // [001] + {1.0, 0.0, 0.0}, // [100] at eta=0, chi=90 + {s2, s2, 0.0}}, // [110] at eta=45, chi=90 + "standard"); +} + +// ----------------------------------------------------------------------- +// tetragonalLow: 4/m +// SST: eta in [0, 90deg], chi in [0, 90deg] +// Vertices: [001], [100] (eta=0,chi=90), [010] (eta=90,chi=90) +// Boundaries: +// 1. eta >= 0 => normal = [0, 1, 0] +// 2. eta <= 90 => normal = [1, 0, 0] (x >= 0) +// Verify: dot([0,1,0], [1,0,0]) = 0. On boundary. Good. +// ----------------------------------------------------------------------- +FundamentalSectorGeometry FundamentalSectorGeometry::tetragonalLow() +{ + return FundamentalSectorGeometry( + // Boundary normals + {{0.0, 1.0, 0.0}, // y >= 0: eta >= 0 + {1.0, 0.0, 0.0}}, // x >= 0: eta <= 90deg + // Vertices + {{0.0, 0.0, 1.0}, // [001] + {1.0, 0.0, 0.0}, // [100] at eta=0, chi=90 + {0.0, 1.0, 0.0}}, // [010] at eta=90, chi=90 + "extended", + 8 // supergroup = TetragonalHigh + ); +} + +// ----------------------------------------------------------------------- +// trigonalHigh: -3m +// SST: eta in [-90, -30deg], chi in [0, 90deg] +// In the standard spherical coordinate convention used by the code: +// h = (sin(chi)*cos(eta), sin(chi)*sin(eta), cos(chi)) +// At eta=-90, chi=90: [0, -1, 0] +// At eta=-30, chi=90: [cos(-30), sin(-30), 0] = [sqrt3/2, -1/2, 0] +// Vertices: [001], [0,-1,0], [sqrt3/2, -1/2, 0] +// +// Boundaries: +// 1. eta >= -90 => The meridian at eta=-90 is the y-axis plane with x=0. +// Points at eta > -90 (moving toward eta=-30) have x > 0 (for chi > 0). +// So normal = [-1, 0, 0]? Let's verify: +// At eta=-30: h = [sqrt3/2, -1/2, 0]. dot(h, [-1,0,0]) = -sqrt3/2 < 0. Wrong sign. +// At eta=-90: h = [0, -1, 0]. dot(h, [-1,0,0]) = 0. On boundary. +// So normal should be [1, 0, 0] (x >= 0). +// But at eta=-90: [0,-1,0] has x=0. On boundary. Good. +// Actually let me reconsider. eta=-90 means cos(eta)=0, sin(eta)=-1. +// h = [sin(chi)*0, sin(chi)*(-1), cos(chi)] = [0, -sin(chi), cos(chi)]. +// For the boundary eta >= -90, we need everything with eta from -90 to -30. +// At eta=-60 (interior): h = [sin(chi)*cos(-60), sin(chi)*sin(-60), cos(chi)] +// = [sin(chi)*0.5, -sin(chi)*sqrt3/2, cos(chi)] +// dot(h, [1,0,0]) = sin(chi)*0.5 > 0 when chi > 0. So x >= 0 works. But wait... +// Hmm, cos(-90)=0, cos(-60)=0.5, cos(-30)=sqrt3/2. So for eta in [-90,-30], cos(eta) >= 0. +// And sin(eta) < 0 for all these angles. So the x-component of h = sin(chi)*cos(eta) >= 0. +// Normal = [0, -1, 0] won't work because at eta=-60 we get dot = sin(chi)*sqrt3/2 > 0. That works. +// Actually we need 2 meridian boundaries: eta >= -90 and eta <= -30. +// +// For eta >= -90deg (eta >= -90): +// The plane at eta=-90 passes through z and [0,-1,0]. +// For eta > -90, cos(eta) > 0 => x > 0. +// Normal = [1, 0, 0]... but the sector is entirely in x >= 0? Let me check. +// Yes, cos(eta) >= 0 for eta in [-90, -30] (both are in the range where cos >= 0). +// So normal = [1, 0, 0] works for the left boundary. But it's redundant for eta >= -90 +// since cos(-90) = 0 (boundary) and cos(-89) > 0 (inside). +// Actually no: at eta = -90, x=0 which is exactly on the boundary. We need x >= 0. +// But the boundary is the meridian at eta=-90, and the inward normal is [1,0,0]. +// Hmm wait, the meridian at eta=-90 is the plane y-z (x=0). Points with eta > -90 +// have x > 0. So the inward normal is indeed [1, 0, 0]. +// +// For eta <= -30deg: +// The plane at eta=-30 passes through z and [cos(-30), sin(-30), 0] = [sqrt3/2, -1/2, 0]. +// The inward normal points toward more negative eta (from -30 toward -90). +// Normal to a meridian at angle alpha is [-sin(alpha), cos(alpha), 0] (pointing toward decreasing eta). +// For alpha = -30: [-sin(-30), cos(-30), 0] = [1/2, sqrt3/2, 0]. +// But that points toward INCREASING eta. We want the opposite: [-1/2, -sqrt3/2, 0]. +// Verify: dot([0,-1,0], [-1/2,-sqrt3/2,0]) = sqrt3/2 > 0. Inside. Good. +// Verify: dot([sqrt3/2,-1/2,0], [-1/2,-sqrt3/2,0]) = -sqrt3/4 + sqrt3/4 = 0. On boundary. Good. +// Verify: dot([1/2,-sqrt3/2,0], [-1/2,-sqrt3/2,0]) = -1/4 + 3/4 = 1/2 > 0. Inside (eta=-60). Good. +// ----------------------------------------------------------------------- +FundamentalSectorGeometry FundamentalSectorGeometry::trigonalHigh() +{ + double s3h = std::sqrt(3.0) / 2.0; + return FundamentalSectorGeometry( + // Boundary normals + {{1.0, 0.0, 0.0}, // x >= 0: eta >= -90deg boundary + {-0.5, -s3h, 0.0}}, // eta <= -30deg boundary + // Vertices + {{0.0, 0.0, 1.0}, // [001] + {0.0, -1.0, 0.0}, // at eta=-90, chi=90 + {s3h, -0.5, 0.0}}, // at eta=-30, chi=90 + "standard"); +} + +// ----------------------------------------------------------------------- +// trigonalLow: -3 +// SST: eta in [-120, 0deg], chi in [0, 90deg] +// At eta=0, chi=90: [1, 0, 0] +// At eta=-120, chi=90: [cos(-120), sin(-120), 0] = [-1/2, -sqrt3/2, 0] +// Vertices: [001], [1,0,0], [-1/2, -sqrt3/2, 0] +// +// Boundaries: +// 1. eta >= -120: +// Meridian at eta=-120, direction [-1/2, -sqrt3/2, 0]. +// Inward normal (toward more positive eta): [sin(120), -cos(120), 0] = [sqrt3/2, 1/2, 0] +// Verify: dot([1,0,0], [sqrt3/2,1/2,0]) = sqrt3/2 > 0. Inside (eta=0). Good. +// Verify: dot([-1/2,-sqrt3/2,0], [sqrt3/2,1/2,0]) = -sqrt3/4 - sqrt3/4 = -sqrt3/2? Wait. +// Let me redo. [-1/2, -sqrt3/2, 0] dot [sqrt3/2, 1/2, 0] = -sqrt3/4 + (-sqrt3/2)(1/2) = -sqrt3/4 - sqrt3/4 = -sqrt3/2 < 0. Not on boundary! +// +// Let me reconsider. Normal to meridian at angle alpha pointing inward (toward the sector). +// The meridian at alpha goes through the z-axis in the direction [cos(alpha), sin(alpha), 0]. +// Its normal in the xy-plane is [-sin(alpha), cos(alpha), 0] (rotated 90 CCW). +// For the sector with eta in [-120, 0], the interior is at eta > -120. +// Going from eta=-120 toward eta=0 is CCW if viewed from +z (eta increases CCW). +// The inward normal at eta=-120 should point toward the interior (higher eta). +// +// Normal = [-sin(-120), cos(-120), 0] = [sqrt3/2, -1/2, 0]. +// Verify: dot([-1/2, -sqrt3/2, 0], [sqrt3/2, -1/2, 0]) = -sqrt3/4 + sqrt3/4 = 0. On boundary. Good. +// Verify: dot([1, 0, 0], [sqrt3/2, -1/2, 0]) = sqrt3/2 > 0. Interior (eta=0). Good. +// Verify interior point at eta=-60: [cos(-60), sin(-60), 0] = [1/2, -sqrt3/2, 0] +// dot([1/2, -sqrt3/2, 0], [sqrt3/2, -1/2, 0]) = sqrt3/4 + sqrt3/4 = sqrt3/2 > 0. Good. +// +// 2. eta <= 0: +// Meridian at eta=0, direction [1, 0, 0]. +// Normal pointing inward (toward more negative eta): [sin(0), -cos(0), 0] = [0, -1, 0]. +// Verify: dot([1, 0, 0], [0, -1, 0]) = 0. On boundary. Good. +// Verify: dot([1/2, -sqrt3/2, 0], [0, -1, 0]) = sqrt3/2 > 0. Interior. Good. +// ----------------------------------------------------------------------- +FundamentalSectorGeometry FundamentalSectorGeometry::trigonalLow() +{ + double s3h = std::sqrt(3.0) / 2.0; + return FundamentalSectorGeometry( + // Boundary normals + {{s3h, -0.5, 0.0}, // eta >= -120deg + {0.0, -1.0, 0.0}}, // eta <= 0deg (y <= 0) + // Vertices + {{0.0, 0.0, 1.0}, // [001] + {1.0, 0.0, 0.0}, // at eta=0, chi=90 + {-0.5, -s3h, 0.0}}, // at eta=-120, chi=90 + "impossible"); +} + +// ----------------------------------------------------------------------- +// orthorhombic: mmm +// SST: eta in [0, 90deg], chi in [0, 90deg] +// Vertices: [001], [100] (eta=0,chi=90), [010] (eta=90,chi=90) +// Boundaries: +// 1. eta >= 0 => normal = [0, 1, 0] +// 2. eta <= 90 => normal = [1, 0, 0] (x >= 0) +// (Same as tetragonal low geometry, but different color mode and no supergroup) +// ----------------------------------------------------------------------- +FundamentalSectorGeometry FundamentalSectorGeometry::orthorhombic() +{ + return FundamentalSectorGeometry( + // Boundary normals + {{0.0, 1.0, 0.0}, // y >= 0: eta >= 0 + {1.0, 0.0, 0.0}}, // x >= 0: eta <= 90deg + // Vertices + {{0.0, 0.0, 1.0}, // [001] + {1.0, 0.0, 0.0}, // [100] at eta=0, chi=90 + {0.0, 1.0, 0.0}}, // [010] at eta=90, chi=90 + "standard"); +} + +// ----------------------------------------------------------------------- +// monoclinic: 2/m +// SST: eta in [0, 180deg], chi in [0, 90deg] +// Vertices: [001], [100] (eta=0,chi=90), [-100] (eta=180,chi=90) +// Boundaries: +// 1. eta >= 0 => normal = [0, 1, 0] +// 2. eta <= 180 => normal = [0, -1, 0] +// But wait: [0,1,0] and [0,-1,0] together mean y >= 0 AND y <= 0, i.e. y = 0. +// That can't be right. Let me reconsider. +// eta in [0, 180] means atan2(y,x) in [0, 180], which means y >= 0. +// So the only meridian constraint is y >= 0, i.e., normal = [0, 1, 0]. +// The other boundary is chi <= 90 (hemisphere). +// At eta=180: h = [sin(chi)*cos(180), sin(chi)*sin(180), cos(chi)] = [-sin(chi), 0, cos(chi)] +// This has y = 0, which satisfies y >= 0. So a single normal [0,1,0] covers the entire sector. +// Actually we need no upper bound on eta since eta <= 180 just means we're in the y >= 0 half. +// The sector is a full half-hemisphere (y >= 0). +// ----------------------------------------------------------------------- +FundamentalSectorGeometry FundamentalSectorGeometry::monoclinic() +{ + return FundamentalSectorGeometry( + // Boundary normals + {{0.0, 1.0, 0.0}}, // y >= 0: eta in [0, 180deg] + // Vertices + {{0.0, 0.0, 1.0}, // [001] + {1.0, 0.0, 0.0}, // [100] at eta=0, chi=90 + {-1.0, 0.0, 0.0}}, // [-100] at eta=180, chi=90 + "extended", + 6 // supergroup = OrthoRhombic + ); +} + +// ----------------------------------------------------------------------- +// triclinic: -1 +// SST: eta in [0, 180deg], chi in [0, 90deg] (but this is the same as monoclinic!) +// Actually triclinic covers the entire upper hemisphere. +// For triclinic, there's no azimuthal constraint; the SST is the full hemisphere. +// No vertices (it's a continuous region without corners in the traditional SST sense). +// The only boundary is the equator (chi <= 90). +// ----------------------------------------------------------------------- +FundamentalSectorGeometry FundamentalSectorGeometry::triclinic() +{ + return FundamentalSectorGeometry( + // No boundary normals needed (full upper hemisphere is the SST) + // But we may need to keep z >= 0 for safety, though isInside should + // handle this implicitly for directions in the upper hemisphere. + {}, + // No vertices + {}, "impossible"); +} + +} // namespace ebsdlib diff --git a/Source/EbsdLib/Utilities/FundamentalSectorGeometry.hpp b/Source/EbsdLib/Utilities/FundamentalSectorGeometry.hpp new file mode 100644 index 00000000..407d2e2d --- /dev/null +++ b/Source/EbsdLib/Utilities/FundamentalSectorGeometry.hpp @@ -0,0 +1,65 @@ +#pragma once + +#include "EbsdLib/EbsdLib.h" + +#include +#include +#include +#include +#include +#include + +namespace ebsdlib +{ + +class EbsdLib_EXPORT FundamentalSectorGeometry +{ +public: + using Vec3 = std::array; + + FundamentalSectorGeometry(std::vector boundaryNormals, std::vector vertices, std::string colorKeyMode, int32_t supergroupIndex = -1); + + std::pair polarCoordinates(const Vec3& h) const; + double correctAzimuthalAngle(double rhoRaw) const; + bool isInside(const Vec3& h) const; + + const Vec3& barycenter() const; + const std::vector& vertices() const; + const std::vector& boundaryNormals() const; + const std::string& colorKeyMode() const; + int32_t supergroupIndex() const; + + // Static factory methods for each Laue group + static FundamentalSectorGeometry cubicHigh(); // m-3m + static FundamentalSectorGeometry cubicLow(); // m-3 + static FundamentalSectorGeometry hexagonalHigh(); // 6/mmm + static FundamentalSectorGeometry hexagonalLow(); // 6/m + static FundamentalSectorGeometry tetragonalHigh(); // 4/mmm + static FundamentalSectorGeometry tetragonalLow(); // 4/m + static FundamentalSectorGeometry trigonalHigh(); // -3m + static FundamentalSectorGeometry trigonalLow(); // -3 + static FundamentalSectorGeometry orthorhombic(); // mmm + static FundamentalSectorGeometry monoclinic(); // 2/m + static FundamentalSectorGeometry triclinic(); // -1 + +private: + std::vector m_BoundaryNormals; + std::vector m_Vertices; + Vec3 m_Barycenter = {0.0, 0.0, 0.0}; + std::string m_ColorKeyMode; + int32_t m_SupergroupIndex = -1; + + static constexpr size_t k_AzimuthalTableSize = 1000; + std::array m_AzimuthalCorrectionTable = {}; + + void computeBarycenter(); + void precomputeAzimuthalCorrection(); + + static Vec3 vecNormalize(const Vec3& v); + static Vec3 vecCross(const Vec3& a, const Vec3& b); + static double vecDot(const Vec3& a, const Vec3& b); + static double vecAngle(const Vec3& a, const Vec3& b); + static Vec3 vecNeg(const Vec3& v); +}; + +} // namespace ebsdlib diff --git a/Source/EbsdLib/Utilities/GriddedColorKey.cpp b/Source/EbsdLib/Utilities/GriddedColorKey.cpp new file mode 100644 index 00000000..c6c491f2 --- /dev/null +++ b/Source/EbsdLib/Utilities/GriddedColorKey.cpp @@ -0,0 +1,134 @@ +#include "EbsdLib/Utilities/GriddedColorKey.hpp" + +#include +#include + +namespace ebsdlib +{ + +namespace +{ +constexpr double k_Pi = 3.14159265358979323846; +constexpr double k_HalfPi = k_Pi / 2.0; +constexpr double k_DegToRad = k_Pi / 180.0; +} // namespace + +GriddedColorKey::GriddedColorKey(IColorKey::Pointer innerKey, double resolutionDeg) +: m_InnerKey(std::move(innerKey)) +, m_ResolutionDeg(resolutionDeg) +, m_ResolutionRad(resolutionDeg * k_DegToRad) +{ + // Grid covers eta in [0, pi] (180 degrees) and chi in [0, pi/2] (90 degrees) + // This covers all possible Laue group SSTs + m_EtaSteps = static_cast(std::ceil(180.0 / resolutionDeg)) + 1; + m_ChiSteps = static_cast(std::ceil(90.0 / resolutionDeg)) + 1; + precomputeGrid(); +} + +void GriddedColorKey::precomputeGrid() +{ + m_Grid.resize(m_EtaSteps); + + for(int ei = 0; ei < m_EtaSteps; ei++) + { + m_Grid[ei].resize(m_ChiSteps); + double eta = static_cast(ei) * m_ResolutionRad; + + for(int ci = 0; ci < m_ChiSteps; ci++) + { + double chi = static_cast(ci) * m_ResolutionRad; + + // Convert spherical to Cartesian direction and compute color + // via the inner key's Vec3 overload + double sinChi = std::sin(chi); + double cosChi = std::cos(chi); + Vec3 dir = {sinChi * std::cos(eta), sinChi * std::sin(eta), cosChi}; + + m_Grid[ei][ci] = m_InnerKey->direction2Color(dir); + } + } +} + +GriddedColorKey::Vec3 GriddedColorKey::lookupGrid(double eta, double chi) const +{ + // Map to grid indices via nearest-neighbor snapping + int ei = static_cast(std::round(eta / m_ResolutionRad)); + int ci = static_cast(std::round(chi / m_ResolutionRad)); + + // Clamp to grid bounds + ei = std::clamp(ei, 0, m_EtaSteps - 1); + ci = std::clamp(ci, 0, m_ChiSteps - 1); + + return m_Grid[ei][ci]; +} + +GriddedColorKey::Vec3 GriddedColorKey::direction2Color(const Vec3& direction) const +{ + // Convert direction to (eta, chi) and look up from grid + double chi = std::acos(std::clamp(direction[2], -1.0, 1.0)); + double eta = std::atan2(direction[1], direction[0]); + if(eta < 0.0) + { + eta += 2.0 * k_Pi; + } + return lookupGrid(eta, chi); +} + +GriddedColorKey::Vec3 GriddedColorKey::direction2Color(double eta, double chi, const Vec3& angleLimits) const +{ + // Snap (eta, chi) to nearest grid coordinates so neighboring pixels in the + // same cell return identical colors (flat-shaded patches, MTEX-style), + // then ask the inner color key for the color at the snapped coordinates + // using the caller-supplied angleLimits. We pass eta through unchanged + // (no [0, 2π] wrap): some Laue classes have negative angleLimits[0] + // (Trigonal-3 etaMin=-120°, -3m etaMin=-90°) and the TSL formula uses + // |eta - etaMin| directly, which is correct only if eta retains its sign. + // We cannot use the precomputed grid here because that grid was baked at + // construction time using the inner key's *default* angle limits (cubic + // m-3m for TSLColorKey), which are wrong for every other Laue class. + const int ei = static_cast(std::round(eta / m_ResolutionRad)); + const int ci = static_cast(std::round(chi / m_ResolutionRad)); + double snappedEta = static_cast(ei) * m_ResolutionRad; + double snappedChi = static_cast(ci) * m_ResolutionRad; + + // Clamp the snapped *chi* to [0, chiMax]. Without this, boundary pixels can + // be pushed marginally outside the SST by the snap — for cubic m-3m chiMax + // depends on eta, so the legend renderer passes angleLimits[2] = + // chiMax(original_eta) but the snap shifts eta to a different cell whose + // effective chiMax may differ. The TSL formula r = 1 - chi/chiMax then + // goes negative, sqrt produces NaN, and the resulting cast-to-int produces + // a stippled gray/dark line along the curved edge of the legend. + // + // We deliberately do NOT clamp snappedEta to [angleLimits[0], + // angleLimits[1]]. Triclinic (-1) and any other class with a wide eta + // range relies on the inner formula's |eta - etaMin| handling of out-of- + // range eta to color the full IPF disk; clamping eta would collapse the + // lower hemisphere of the disk to a single eta value. + if(snappedChi < 0.0) + { + snappedChi = 0.0; + } + if(snappedChi > angleLimits[2]) + { + snappedChi = angleLimits[2]; + } + + return m_InnerKey->direction2Color(snappedEta, snappedChi, angleLimits); +} + +std::string GriddedColorKey::name() const +{ + return m_InnerKey->name() + " (gridded)"; +} + +IColorKey::Pointer GriddedColorKey::innerKey() const +{ + return m_InnerKey; +} + +double GriddedColorKey::resolutionDeg() const +{ + return m_ResolutionDeg; +} + +} // namespace ebsdlib diff --git a/Source/EbsdLib/Utilities/GriddedColorKey.hpp b/Source/EbsdLib/Utilities/GriddedColorKey.hpp new file mode 100644 index 00000000..75a4d0b7 --- /dev/null +++ b/Source/EbsdLib/Utilities/GriddedColorKey.hpp @@ -0,0 +1,69 @@ +#pragma once + +#include "EbsdLib/EbsdLib.h" +#include "EbsdLib/Utilities/IColorKey.hpp" + +#include +#include +#include + +namespace ebsdlib +{ + +/** + * @brief Decorator that wraps any IColorKey with grid-based flat shading. + * + * On construction, precomputes colors at a regular grid of (eta, chi) sample + * points by calling the inner color key. When direction2Color() is called, + * it snaps the direction to the nearest grid point and returns the precomputed + * color (flat shading), producing smooth color patches that hide C1 + * discontinuities in the underlying color function. + * + * This replicates the MTEX rendering approach where colors are sampled at + * ~1-degree intervals and rendered as flat-colored quadrilateral patches. + * + * Usage: pass `gridded = true` to LaueOps::generateIPFTriangleLegend(), which + * will wrap the kind-selected key in a GriddedColorKey internally. Direct + * construction is only needed for tests or custom pipelines. + */ +class EbsdLib_EXPORT GriddedColorKey : public IColorKey +{ +public: + /** + * @brief Construct a grid-decorated color key. + * @param innerKey The underlying color key to sample from + * @param resolutionDeg Grid cell size in degrees (default 1.0, matching MTEX) + */ + explicit GriddedColorKey(IColorKey::Pointer innerKey, double resolutionDeg = 1.0); + ~GriddedColorKey() override = default; + + Vec3 direction2Color(const Vec3& direction) const override; + Vec3 direction2Color(double eta, double chi, const Vec3& angleLimits) const override; + std::string name() const override; + + /** + * @brief Get the underlying (unwrapped) color key. + */ + IColorKey::Pointer innerKey() const; + + /** + * @brief Get the grid resolution in degrees. + */ + double resolutionDeg() const; + +private: + IColorKey::Pointer m_InnerKey; + double m_ResolutionRad; // grid cell size in radians + + // Precomputed color grid: m_Grid[etaIdx][chiIdx] = RGB color + // Covers eta in [0, pi] and chi in [0, pi/2] to handle all Laue groups + std::vector> m_Grid; + int m_EtaSteps; + int m_ChiSteps; + double m_ResolutionDeg; + + void precomputeGrid(); + Vec3 lookupGrid(double eta, double chi) const; +}; + +} // namespace ebsdlib diff --git a/Source/EbsdLib/Utilities/IColorKey.hpp b/Source/EbsdLib/Utilities/IColorKey.hpp new file mode 100644 index 00000000..c19063eb --- /dev/null +++ b/Source/EbsdLib/Utilities/IColorKey.hpp @@ -0,0 +1,63 @@ +#pragma once + +#include "EbsdLib/EbsdLib.h" + +#include +#include +#include +#include + +namespace ebsdlib +{ + +/** + * @brief Abstract interface for IPF color key strategies. + * + * Maps a crystal direction (already projected into the fundamental sector) + * to an RGB color. Implementations include TSL (traditional) and + * Nolze-Hielscher (perceptually improved). + * + * Two overloads are provided: + * - direction2Color(Vec3): takes a 3D unit direction vector (preferred for N-H) + * - direction2Color(eta, chi, angleLimits): takes spherical coords (TSL compatibility) + */ +class EbsdLib_EXPORT IColorKey +{ +public: + using Pointer = std::shared_ptr; + using Vec3 = std::array; + + virtual ~IColorKey() = default; + + /** + * @brief Map a unit crystal direction vector (in the fundamental sector) to an RGB color. + * This is the primary interface. The direction must already be projected into the SST. + * @param direction Unit direction vector {x, y, z} in the fundamental sector + * @return {R, G, B} each in [0.0, 1.0] + */ + virtual Vec3 direction2Color(const Vec3& direction) const = 0; + + /** + * @brief Map a crystal direction via spherical coordinates to an RGB color. + * Provided for backward compatibility with the TSL pipeline. + * Default implementation converts to a direction vector and calls the Vec3 overload. + * @param eta Azimuthal angle of the direction (radians) + * @param chi Polar angle of the direction from z-axis (radians) + * @param angleLimits {etaMin, etaMax, chiMax} from the LaueOps subclass + * @return {R, G, B} each in [0.0, 1.0] + */ + virtual Vec3 direction2Color(double eta, double chi, const Vec3& angleLimits) const + { + // Default: convert spherical to Cartesian and delegate + double sinChi = std::sin(chi); + Vec3 dir = {sinChi * std::cos(eta), sinChi * std::sin(eta), std::cos(chi)}; + return direction2Color(dir); + } + + /** + * @brief Human-readable name of this color key. + */ + virtual std::string name() const = 0; +}; + +} // namespace ebsdlib diff --git a/Source/EbsdLib/Utilities/ImageCrop.cpp b/Source/EbsdLib/Utilities/ImageCrop.cpp new file mode 100644 index 00000000..bb0bfc67 --- /dev/null +++ b/Source/EbsdLib/Utilities/ImageCrop.cpp @@ -0,0 +1,75 @@ +/* ============================================================================ + * Copyright (c) 2009-2025 BlueQuartz Software, LLC + * + * SPDX-License-Identifier: BSD-3-Clause + * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ + +#include "EbsdLib/Utilities/ImageCrop.hpp" + +#include +#include + +namespace ebsdlib +{ + +CroppedImage CropImageToContent(const UInt8ArrayType* src, int canvasWidth, int canvasHeight, int channels, int padding) +{ + CroppedImage out; + if(src == nullptr || canvasWidth <= 0 || canvasHeight <= 0 || (channels != 3 && channels != 4)) + { + return out; + } + + const uint8_t* p = src->getPointer(0); + + // Find the bounding box of non-white pixels. "White" = (255, 255, 255). + int minX = canvasWidth; + int minY = canvasHeight; + int maxX = -1; + int maxY = -1; + for(int y = 0; y < canvasHeight; ++y) + { + for(int x = 0; x < canvasWidth; ++x) + { + const size_t idx = (static_cast(y) * static_cast(canvasWidth) + static_cast(x)) * static_cast(channels); + const bool isWhite = (p[idx] == 255 && p[idx + 1] == 255 && p[idx + 2] == 255); + if(!isWhite) + { + minX = std::min(minX, x); + minY = std::min(minY, y); + maxX = std::max(maxX, x); + maxY = std::max(maxY, y); + } + } + } + + // Degenerate case: image is all white. Return original unchanged. + if(maxX < 0) + { + out.width = canvasWidth; + out.height = canvasHeight; + out.image = UInt8ArrayType::CreateArray(static_cast(canvasWidth) * static_cast(canvasHeight), std::vector{static_cast(channels)}, src->getName(), true); + std::memcpy(out.image->getPointer(0), p, static_cast(canvasWidth) * static_cast(canvasHeight) * static_cast(channels)); + return out; + } + + // Apply padding and clamp to canvas. + minX = std::max(0, minX - padding); + minY = std::max(0, minY - padding); + maxX = std::min(canvasWidth - 1, maxX + padding); + maxY = std::min(canvasHeight - 1, maxY + padding); + + out.width = maxX - minX + 1; + out.height = maxY - minY + 1; + out.image = UInt8ArrayType::CreateArray(static_cast(out.width) * static_cast(out.height), std::vector{static_cast(channels)}, src->getName() + "_cropped", true); + uint8_t* dst = out.image->getPointer(0); + for(int y = 0; y < out.height; ++y) + { + const size_t srcRowStart = (static_cast(minY + y) * static_cast(canvasWidth) + static_cast(minX)) * static_cast(channels); + const size_t dstRowStart = static_cast(y) * static_cast(out.width) * static_cast(channels); + std::memcpy(dst + dstRowStart, p + srcRowStart, static_cast(out.width) * static_cast(channels)); + } + return out; +} + +} // namespace ebsdlib diff --git a/Source/EbsdLib/Utilities/ImageCrop.hpp b/Source/EbsdLib/Utilities/ImageCrop.hpp new file mode 100644 index 00000000..63156fac --- /dev/null +++ b/Source/EbsdLib/Utilities/ImageCrop.hpp @@ -0,0 +1,58 @@ +/* ============================================================================ + * Copyright (c) 2009-2025 BlueQuartz Software, LLC + * + * SPDX-License-Identifier: BSD-3-Clause + * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ +#pragma once + +#include "EbsdLib/Core/EbsdDataArray.hpp" +#include "EbsdLib/EbsdLib.h" + +#include + +namespace ebsdlib +{ + +/** + * @brief Result of a CropImageToContent call: the cropped pixel buffer plus + * its dimensions. The image is laid out row-major with `channels` + * consecutive components per pixel (e.g. RGB: channels=3, RGBA: 4). + */ +struct EbsdLib_EXPORT CroppedImage +{ + UInt8ArrayType::Pointer image; + int width = 0; + int height = 0; +}; + +/** + * @brief Crop an RGB or RGBA image down to the bounding box of its non-white + * pixels, with a configurable padding applied on each side and clamped + * to the canvas boundaries. + * + * The IPF triangle legend renderer paints a small SST wedge onto a much + * larger square canvas (because the legend method takes only `canvasDim` + * and the SST geometry is per-Laue-class). The result is a canvas with a + * lot of whitespace, especially for hex/trig classes whose SST is a + * narrow wedge of the unit circle. Calling this helper after rendering + * produces an image whose dimensions track the painted content, similar + * to how MTEX's IPF legend output is sized. + * + * Behaviour: + * - "White pixel" is exact (255, 255, 255). The legend painter fills its + * background with pure white, so this is sufficient. + * - If every pixel is white (degenerate case), the original canvas is + * returned unchanged rather than an empty image. + * - Padding is clamped: a padding so large it would push the bounding + * box past the canvas just yields the full canvas as output. + * + * @param src Source image (canvasWidth*canvasHeight tuples, channels per pixel). + * @param canvasWidth Source image pixel width. + * @param canvasHeight Source image pixel height. + * @param channels Number of color components per pixel (3 for RGB, 4 for RGBA). + * @param padding Padding (in pixels) to add on each side of the bounding box. + * @return CroppedImage holding a freshly allocated UInt8ArrayType + dimensions. + */ +CroppedImage EbsdLib_EXPORT CropImageToContent(const UInt8ArrayType* src, int canvasWidth, int canvasHeight, int channels, int padding); + +} // namespace ebsdlib diff --git a/Source/EbsdLib/Utilities/InversePoleFigureUtilities.cpp b/Source/EbsdLib/Utilities/InversePoleFigureUtilities.cpp new file mode 100644 index 00000000..829dbb2f --- /dev/null +++ b/Source/EbsdLib/Utilities/InversePoleFigureUtilities.cpp @@ -0,0 +1,325 @@ +/* ============================================================================ + * Copyright (c) 2009-2025 BlueQuartz Software, LLC + * + * Redistribution and use in source and binary forms, with or without modification, + * are permitted provided that the following conditions are met: + * + * Redistributions of source code must retain the above copyright notice, this + * list of conditions and the following disclaimer. + * + * Redistributions in binary form must reproduce the above copyright notice, this + * list of conditions and the following disclaimer in the documentation and/or + * other materials provided with the distribution. + * + * Neither the name of BlueQuartz Software, the US Air Force, nor the names of its + * contributors may be used to endorse or promote products derived from this software + * without specific prior written permission. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE + * DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR + * SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, + * OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE + * USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + * + * The code contained herein was partially funded by the following contracts: + * United States Air Force Prime Contract FA8650-07-D-5800 + * United States Air Force Prime Contract FA8650-10-D-5210 + * United States Prime Contract Navy N00173-07-C-2068 + * + * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ + +#include "InversePoleFigureUtilities.h" + +#include +#include + +#include "EbsdLib/Core/EbsdLibConstants.h" +#include "EbsdLib/LaueOps/LaueOps.h" +#include "EbsdLib/Math/EbsdLibMath.h" +#include "EbsdLib/Math/Matrix3X3.hpp" +#include "EbsdLib/Orientation/Euler.hpp" +#include "EbsdLib/Orientation/OrientationFwd.hpp" +#include "EbsdLib/Orientation/Quaternion.hpp" +#include "EbsdLib/Utilities/ColorTable.h" +#include "EbsdLib/Utilities/ModifiedLambertProjection.h" + +using namespace ebsdlib; + +// ----------------------------------------------------------------------------- +InversePoleFigureUtilities::InversePoleFigureUtilities() = default; + +// ----------------------------------------------------------------------------- +InversePoleFigureUtilities::~InversePoleFigureUtilities() = default; + +// ----------------------------------------------------------------------------- +ebsdlib::FloatArrayType::Pointer InversePoleFigureUtilities::computeIPFDirections(const LaueOps& ops, ebsdlib::FloatArrayType* eulers, const Matrix3X1D& sampleDirection) +{ + size_t numOrientations = eulers->getNumberOfTuples(); + + // Allocate output array for crystal directions (3 components per orientation) + std::vector cDims(1, 3); + ebsdlib::FloatArrayType::Pointer directions = ebsdlib::FloatArrayType::CreateArray(numOrientations, cDims, "IPF_Directions", true); + directions->initializeWithZeros(); + + size_t numSymOps = ops.getNumSymOps(); + bool hasInversion = ops.getHasInversion(); + + const ebsdlib::Matrix3X1D refDirection(sampleDirection); + + size_t validCount = 0; + + for(size_t i = 0; i < numOrientations; i++) + { + float* euler = eulers->getTuplePointer(i); + EulerDType eu(static_cast(euler[0]), static_cast(euler[1]), static_cast(euler[2])); + + QuatD q1 = eu.toQuaternion(); + OrientationMatrixDType om; + + bool found = false; + ebsdlib::Matrix3X1D p; + + for(size_t j = 0; j < numSymOps; j++) + { + QuaternionDType qu(ops.getQuatSymOp(j) * q1); + om = qu.toOrientationMatrix(); + ebsdlib::Matrix3X3D g(om.data()); + p = (g * refDirection).normalize(); + + if(!hasInversion && p[2] < 0) + { + continue; + } + if(hasInversion && p[2] < 0) + { + p = p * -1.0; + } + + double chi = std::acos(p[2]); + double eta = std::atan2(p[1], p[0]); + + if(!ops.inUnitTriangle(eta, chi)) + { + continue; + } + + found = true; + break; + } + + if(found) + { + float* dirPtr = directions->getTuplePointer(validCount); + dirPtr[0] = static_cast(p[0]); + dirPtr[1] = static_cast(p[1]); + dirPtr[2] = static_cast(p[2]); + validCount++; + } + } + + // Create a trimmed array with only the valid directions + if(validCount < numOrientations) + { + ebsdlib::FloatArrayType::Pointer trimmed = ebsdlib::FloatArrayType::CreateArray(validCount, cDims, "IPF_Directions", true); + float* srcPtr = directions->getPointer(0); + float* dstPtr = trimmed->getPointer(0); + std::copy(srcPtr, srcPtr + validCount * 3, dstPtr); + return trimmed; + } + + return directions; +} + +// ----------------------------------------------------------------------------- +ebsdlib::DoubleArrayType::Pointer InversePoleFigureUtilities::computeIPFIntensity(const LaueOps& ops, ebsdlib::FloatArrayType* ipfDirections, int imageWidth, int imageHeight, int lambertDim, + bool normalizeMRD, bool useStereographicSST) +{ + // Step 1: Bin the crystal directions into the Lambert projection + float sphereRadius = 1.0f; + ModifiedLambertProjection::Pointer lambert = ModifiedLambertProjection::LambertBallToSquare(ipfDirections, lambertDim, sphereRadius); + + // Step 2: Normalize the north square only (all SST directions have z >= 0) + // We normalize manually to avoid division by zero in the south square + ebsdlib::DoubleArrayType::Pointer northSquare = lambert->getNorthSquare(); + double* north = northSquare->getPointer(0); + size_t nBins = static_cast(lambertDim) * static_cast(lambertDim); + + double northTotal = 0.0; + for(size_t i = 0; i < nBins; i++) + { + northTotal += north[i]; + } + + if(northTotal > 0.0) + { + if(normalizeMRD) + { + // MRD: (count / totalCount) * totalBins + double oneOverTotal = 1.0 / northTotal; + for(size_t i = 0; i < nBins; i++) + { + north[i] = north[i] * oneOverTotal * static_cast(nBins); + } + } + // If not MRD, leave as raw counts + } + + // Step 3: Create the output intensity image + std::vector tDims = {static_cast(imageWidth * imageHeight)}; + std::vector cDims = {1}; + ebsdlib::DoubleArrayType::Pointer intensity = ebsdlib::DoubleArrayType::CreateArray(tDims, cDims, "IPF_Intensity", true); + double* intensityPtr = intensity->getPointer(0); + + if(useStereographicSST) + { + // Use the same stereographic projection as CreateIPFLegend (SST-only view) + int imageDim = imageWidth; // Assumes square image + for(int y = 0; y < imageHeight; y++) + { + for(int x = 0; x < imageWidth; x++) + { + int index = y * imageWidth + x; + std::array sphereDir = {0.0f, 0.0f, 0.0f}; + + if(!ops.mapPixelToSphereSST(x, y, imageDim, sphereDir)) + { + intensityPtr[index] = -1.0; + continue; + } + + // Look up intensity from Lambert bins + std::array sqCoord = {0.0f, 0.0f}; + bool isNorth = lambert->getSquareCoord(sphereDir.data(), sqCoord.data()); + if(isNorth) + { + intensityPtr[index] = lambert->getInterpolatedValue(ModifiedLambertProjection::NorthSquare, sqCoord.data()); + } + else + { + intensityPtr[index] = lambert->getInterpolatedValue(ModifiedLambertProjection::SouthSquare, sqCoord.data()); + } + } + } + } + else + { + // Lambert azimuthal equal-area projection centered on north pole + // Maps the upper hemisphere (z >= 0) to a disk of radius sqrt(2) + float unitRadius = std::sqrt(2.0f); + float span = 2.0f * unitRadius; + float xres = span / static_cast(imageWidth); + float yres = span / static_cast(imageHeight); + + int halfWidth = imageWidth / 2; + int halfHeight = imageHeight / 2; + + for(int y = 0; y < imageHeight; y++) + { + for(int x = 0; x < imageWidth; x++) + { + int index = y * imageWidth + x; + + // Map pixel to equal-area projection coordinates + float xtmp = static_cast(x - halfWidth) * xres + (xres * 0.5f); + float ytmp = static_cast(y - halfHeight) * yres + (yres * 0.5f); + + float rhoSq = xtmp * xtmp + ytmp * ytmp; + + // Check if within hemisphere disk + if(rhoSq > 2.0f) + { + intensityPtr[index] = -1.0; // Outside hemisphere + continue; + } + + // Inverse Lambert azimuthal equal-area projection (north pole centered) + float t = std::sqrt(1.0f - rhoSq / 4.0f); + std::array xyz = {xtmp * t, ytmp * t, 1.0f - rhoSq / 2.0f}; + + // Compute chi (polar angle from z-axis) and eta (azimuthal angle) + double chi = std::acos(static_cast(xyz[2])); + double eta = std::atan2(static_cast(xyz[1]), static_cast(xyz[0])); + + // Check if direction is inside the Standard Stereographic Triangle + if(!ops.inUnitTriangle(eta, chi)) + { + intensityPtr[index] = -1.0; // Outside SST + continue; + } + + // Look up the interpolated intensity from the Lambert projection + std::array sqCoord = {0.0f, 0.0f}; + bool isNorth = lambert->getSquareCoord(xyz.data(), sqCoord.data()); + if(isNorth) + { + intensityPtr[index] = lambert->getInterpolatedValue(ModifiedLambertProjection::NorthSquare, sqCoord.data()); + } + else + { + intensityPtr[index] = lambert->getInterpolatedValue(ModifiedLambertProjection::SouthSquare, sqCoord.data()); + } + } + } + } + + return intensity; +} + +// ----------------------------------------------------------------------------- +void InversePoleFigureUtilities::createIPFColorImage(ebsdlib::DoubleArrayType* intensity, int imageWidth, int imageHeight, int numColors, double minScale, double maxScale, + ebsdlib::UInt8ArrayType* rgba) +{ + // Initialize the image with all zeros + rgba->initializeWithZeros(); + uint32_t* rgbaPtr = reinterpret_cast(rgba->getPointer(0)); + + // Get the color table + std::vector colors(numColors * 3, 0.0f); + EbsdColorTable::GetColorTable(numColors, colors); + + double* dataPtr = intensity->getPointer(0); + double range = maxScale - minScale; + if(range <= 0.0) + { + range = 1.0; + } + + for(int y = 0; y < imageHeight; y++) + { + for(int x = 0; x < imageWidth; x++) + { + size_t idx = static_cast(y * imageWidth + x); + double value = dataPtr[idx]; + + // Pixels outside SST have value -1.0 -> set to white + if(value < 0.0) + { + rgbaPtr[idx] = 0xFFFFFFFF; // White (ARGB) + continue; + } + + // Normalize to [0, 1] range + double normalized = (value - minScale) / range; + int bin = static_cast(normalized * numColors); + if(bin > numColors - 1) + { + bin = numColors - 1; + } + if(bin < 0) + { + bin = 0; + } + + float r = colors[3 * bin]; + float g = colors[3 * bin + 1]; + float b = colors[3 * bin + 2]; + + rgbaPtr[idx] = ebsdlib::RgbColor::dRgb(static_cast(r * 255.0f), static_cast(g * 255.0f), static_cast(b * 255.0f), 255); + } + } +} diff --git a/Source/EbsdLib/Utilities/InversePoleFigureUtilities.h b/Source/EbsdLib/Utilities/InversePoleFigureUtilities.h new file mode 100644 index 00000000..79f8c60e --- /dev/null +++ b/Source/EbsdLib/Utilities/InversePoleFigureUtilities.h @@ -0,0 +1,137 @@ +/* ============================================================================ + * Copyright (c) 2009-2025 BlueQuartz Software, LLC + * + * Redistribution and use in source and binary forms, with or without modification, + * are permitted provided that the following conditions are met: + * + * Redistributions of source code must retain the above copyright notice, this + * list of conditions and the following disclaimer. + * + * Redistributions in binary form must reproduce the above copyright notice, this + * list of conditions and the following disclaimer in the documentation and/or + * other materials provided with the distribution. + * + * Neither the name of BlueQuartz Software, the US Air Force, nor the names of its + * contributors may be used to endorse or promote products derived from this software + * without specific prior written permission. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE + * DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR + * SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, + * OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE + * USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + * + * The code contained herein was partially funded by the following contracts: + * United States Air Force Prime Contract FA8650-07-D-5800 + * United States Air Force Prime Contract FA8650-10-D-5210 + * United States Prime Contract Navy N00173-07-C-2068 + * + * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ + +#pragma once + +#include "EbsdLib/Core/EbsdDataArray.hpp" +#include "EbsdLib/EbsdLib.h" +#include "EbsdLib/Math/Matrix3X1.hpp" + +#include +#include +#include + +namespace ebsdlib +{ + +class LaueOps; // Forward declaration + +/** + * @struct InversePoleFigureConfiguration_t + * @brief Configuration struct for generating Inverse Pole Figure density plots. + * The IPF density plot shows how a sample direction distributes across crystal + * directions within the Standard Stereographic Triangle (SST). + */ +struct InversePoleFigureConfiguration_t +{ + ebsdlib::FloatArrayType* eulers; ///<* The Euler Angles (in Radians) to use for the inverse pole figure + std::array sampleDirections; ///<* 3 orthogonal sample reference directions (e.g., RD, TD, ND) + int imageWidth; ///<* The width of the generated inverse pole figure image in pixels + int imageHeight; ///<* The height of the generated inverse pole figure image in pixels + int lambertDim; ///<* The dimensions in voxels of the Lambert Square used for binning/smoothing + int numColors; ///<* The number of colors to use in the color map + std::string colorMap; ///<* Name of the ColorMap to use + bool normalizeMRD; ///<* true=normalize to MRD (Multiples of Random Distribution), false=raw counts + std::vector labels; ///<* The labels for each of the 3 inverse pole figures (e.g., "RD", "TD", "ND") + std::string phaseName; ///<* The name of the phase + bool FlipFinalImage; ///<* If TRUE, the final image will be flipped across the X Axis so that +Y axis points UP + /// Cartesian basis convention for hex/trig phases. Affects the Miller- + /// index labels drawn around the SST in generateAnnotatedIPFDensity. + /// Ignored for cubic / tetragonal / orthorhombic / monoclinic / triclinic. + /// See ebsdlib::HexConvention. + ebsdlib::HexConvention hexConvention = ebsdlib::HexConvention::XParallelAStar; +}; + +/** + * @class InversePoleFigureUtilities InversePoleFigureUtilities.h /Utilities/InversePoleFigureUtilities.h + * @brief This class provides static utility methods for generating Inverse Pole Figure (IPF) density plots. + * + * The IPF density plot shows the distribution of a sample direction across crystal directions + * within the Standard Stereographic Triangle (SST) using equal-area projection and Lambert-based + * smoothing. + */ +class EbsdLib_EXPORT InversePoleFigureUtilities +{ +public: + InversePoleFigureUtilities(); + virtual ~InversePoleFigureUtilities(); + + /** + * @brief Computes the crystal directions in the fundamental zone for all orientations + * given a single sample reference direction. For each orientation (Euler angle set), + * the sample direction is transformed into the crystal frame and the symmetry-equivalent + * direction within the Standard Stereographic Triangle is found. + * @param ops The LaueOps instance providing symmetry operations + * @param eulers The Euler angles array (3-component tuples, in radians) + * @param sampleDirection The sample reference direction (e.g., [0,0,1] for ND) + * @return FloatArrayType with 3-component tuples (XYZ crystal directions on unit sphere) + */ + static ebsdlib::FloatArrayType::Pointer computeIPFDirections(const LaueOps& ops, ebsdlib::FloatArrayType* eulers, const Matrix3X1D& sampleDirection); + + /** + * @brief Computes the intensity image for a single inverse pole figure using Lambert + * projection for binning and equal-area reprojection masked to the SST boundary. + * @param ops The LaueOps instance providing symmetry operations and SST boundary + * @param ipfDirections The crystal directions from computeIPFDirections + * @param imageWidth Output image width in pixels + * @param imageHeight Output image height in pixels + * @param lambertDim Lambert square dimension for binning/smoothing + * @param normalizeMRD true to normalize to MRD, false for raw counts + * @return DoubleArrayType intensity image (imageWidth * imageHeight). Pixels outside SST have value -1.0. + */ + static ebsdlib::DoubleArrayType::Pointer computeIPFIntensity(const LaueOps& ops, ebsdlib::FloatArrayType* ipfDirections, int imageWidth, int imageHeight, int lambertDim, bool normalizeMRD, + bool useStereographicSST = false); + + /** + * @brief Converts an intensity image to RGBA with SST masking. Pixels inside the SST + * are mapped to colors via the color table; pixels outside are set to white. + * @param intensity The intensity image from computeIPFIntensity + * @param imageWidth Image width in pixels + * @param imageHeight Image height in pixels + * @param numColors Number of colors in the color table + * @param minScale Minimum intensity value for color mapping + * @param maxScale Maximum intensity value for color mapping + * @param rgba [output] RGBA image (4-component UInt8 array, imageWidth * imageHeight tuples) + */ + static void createIPFColorImage(ebsdlib::DoubleArrayType* intensity, int imageWidth, int imageHeight, int numColors, double minScale, double maxScale, ebsdlib::UInt8ArrayType* rgba); + +public: + InversePoleFigureUtilities(const InversePoleFigureUtilities&) = delete; // Copy Constructor Not Implemented + InversePoleFigureUtilities(InversePoleFigureUtilities&&) = delete; // Move Constructor Not Implemented + InversePoleFigureUtilities& operator=(const InversePoleFigureUtilities&) = delete; // Copy Assignment Not Implemented + InversePoleFigureUtilities& operator=(InversePoleFigureUtilities&&) = delete; // Move Assignment Not Implemented +}; + +} // namespace ebsdlib diff --git a/Source/EbsdLib/Utilities/ModifiedLambertProjection.cpp b/Source/EbsdLib/Utilities/ModifiedLambertProjection.cpp index d248badd..4d7c80d4 100644 --- a/Source/EbsdLib/Utilities/ModifiedLambertProjection.cpp +++ b/Source/EbsdLib/Utilities/ModifiedLambertProjection.cpp @@ -535,7 +535,7 @@ void ModifiedLambertProjection::createStereographicProjection(int dim, ebsdlib:: if((xtmp * xtmp + ytmp * ytmp) <= 1.0) { std::array xyz{}; - // project xy from stereo projection to the unit spehere + // project xy from stereo projection to the unit sphere xyz[2] = -((xtmp * xtmp + ytmp * ytmp) - 1) / ((xtmp * xtmp + ytmp * ytmp) + 1); xyz[0] = xtmp * (1 + xyz[2]); xyz[1] = ytmp * (1 + xyz[2]); diff --git a/Source/EbsdLib/Utilities/NolzeHielscherColorKey.cpp b/Source/EbsdLib/Utilities/NolzeHielscherColorKey.cpp new file mode 100644 index 00000000..889f9168 --- /dev/null +++ b/Source/EbsdLib/Utilities/NolzeHielscherColorKey.cpp @@ -0,0 +1,297 @@ +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/ColorSpaceUtils.hpp" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" + +#include +#include + +namespace ebsdlib +{ + +namespace +{ +constexpr double k_Pi = 3.14159265358979323846; +constexpr double k_TwoPi = 2.0 * k_Pi; +constexpr double k_HalfPi = k_Pi / 2.0; + +/** + * @brief Wrap an angle in degrees to [-180, 180]. + */ +double wrapDeg(double x) +{ + x = std::fmod(x + 180.0, 360.0); + if(x < 0.0) + { + x += 360.0; + } + return x - 180.0; +} +/** + * @brief Build a supergroup FundamentalSectorGeometry from a crystal structure index. + * + * The indices come from FundamentalSectorGeometry::supergroupIndex() and + * correspond to the EbsdLibConstants.h crystal structure numbering. + */ +std::unique_ptr buildSupergroupSector(int32_t index) +{ + switch(index) + { + case 0: + return std::make_unique(FundamentalSectorGeometry::hexagonalHigh()); + case 1: + return std::make_unique(FundamentalSectorGeometry::cubicHigh()); + case 6: + return std::make_unique(FundamentalSectorGeometry::orthorhombic()); + case 8: + return std::make_unique(FundamentalSectorGeometry::tetragonalHigh()); + default: + return nullptr; + } +} +} // namespace + +// ----------------------------------------------------------------------- +// Constructor +// ----------------------------------------------------------------------- +NolzeHielscherColorKey::NolzeHielscherColorKey(const FundamentalSectorGeometry& sector, double lambdaL, double lambdaS) +: m_Sector(sector) +, m_LambdaL(lambdaL) +, m_LambdaS(lambdaS) +{ + // For extended color keys, construct the supergroup's sector + if(m_Sector.colorKeyMode() == "extended" && m_Sector.supergroupIndex() >= 0) + { + m_SupergroupSector = buildSupergroupSector(m_Sector.supergroupIndex()); + } + precomputeHueCdf(); +} + +// ----------------------------------------------------------------------- +// precomputeHueCdf +// +// Build a CDF from Gaussian bumps at R(0), G(1/3), B(2/3) positions. +// This redistributes hue so that yellow, cyan, and magenta get +// proportionally more angular space (they are compressed in raw HSV). +// +// From the paper (Appendix A.1): the hue speed function has Gaussian +// peaks at the three primary positions. The CDF of this function +// remaps hue to equalize the color distribution. +// ----------------------------------------------------------------------- +void NolzeHielscherColorKey::precomputeHueCdf() +{ + // Build the speed function f(z) with Gaussian bumps + constexpr double k_GaussWidth = 200.0; // Controls bump sharpness (larger = narrower bumps) + constexpr double k_Baseline = 0.5; // Constant baseline + std::array f = {}; + + for(size_t i = 0; i < k_HueCdfSize; i++) + { + double z = static_cast(i) / static_cast(k_HueCdfSize); + double val = k_Baseline; + // Three Gaussian bumps at red (0), green (1/3), blue (2/3) + for(double center : {0.0, 1.0 / 3.0, 2.0 / 3.0}) + { + double dx = std::fmod(z - center + 0.5, 1.0) - 0.5; // periodic wrap to [-0.5, 0.5] + val += std::exp(-k_GaussWidth * dx * dx); + } + f[i] = val; + } + + // Normalize to probability distribution + double sum = 0.0; + for(auto v : f) + { + sum += v; + } + for(auto& v : f) + { + v /= sum; + } + + // Cumulative sum -> CDF + m_HueCdf[0] = f[0]; + for(size_t i = 1; i < k_HueCdfSize; i++) + { + m_HueCdf[i] = m_HueCdf[i - 1] + f[i]; + } + // Ensure last entry is exactly 1.0 + m_HueCdf[k_HueCdfSize - 1] = 1.0; +} + +// ----------------------------------------------------------------------- +// hueSpeedFunction (Paper Appendix A.1, Eq. 5) +// ----------------------------------------------------------------------- +double NolzeHielscherColorKey::hueSpeedFunction(double rhoDeg, double distance) +{ + double v = 0.5; + v += std::exp(-std::abs(wrapDeg(rhoDeg)) / 4.0); + v += std::exp(-std::abs(wrapDeg(rhoDeg - 120.0)) / 4.0); + v += std::exp(-std::abs(wrapDeg(rhoDeg + 120.0)) / 4.0); + return v * distance; +} + +// ----------------------------------------------------------------------- +// correctHue -- Gaussian CDF-based hue redistribution +// ----------------------------------------------------------------------- +double NolzeHielscherColorKey::correctHue(double hueIn) const +{ + // hueIn is in [0, 1) + double h = std::fmod(hueIn, 1.0); + if(h < 0.0) + { + h += 1.0; + } + + // Fractional index into CDF table + double fIdx = h * static_cast(k_HueCdfSize); + size_t idx0 = static_cast(fIdx); + double frac = fIdx - static_cast(idx0); + + if(idx0 >= k_HueCdfSize - 1) + { + return m_HueCdf[k_HueCdfSize - 1]; + } + + // Linear interpolation + return m_HueCdf[idx0] * (1.0 - frac) + m_HueCdf[idx0 + 1] * frac; +} + +// ----------------------------------------------------------------------- +// lightness (Paper Appendix A.2) +// ----------------------------------------------------------------------- +double NolzeHielscherColorKey::lightness(double theta, double lambdaL) +{ + double sinHalf = std::sin(theta / 2.0); + return lambdaL * (theta / k_HalfPi) + (1.0 - lambdaL) * sinHalf * sinHalf; +} + +// ----------------------------------------------------------------------- +// saturation (Paper Appendix A.2) +// ----------------------------------------------------------------------- +double NolzeHielscherColorKey::saturation(double L, double lambdaS) +{ + return std::clamp(1.0 - 2.0 * lambdaS * std::abs(L - 0.5), 0.0, 1.0); +} + +// ----------------------------------------------------------------------- +// direction2Color +// +// Implements the Nolze-Hielscher coloring approach from the paper: +// 1. Polar coordinates (radius, rho) from the sector geometry +// 2. Hue from azimuthal angle rho +// 3. Lightness from radial distance using a gray gradient blending +// that produces a compact white/gray center with saturated colors +// covering most of the sector area +// 4. Saturation modulated by lightness +// 5. HSL -> RGB +// +// The gray gradient approach (Paper Section 2.4, Appendix A.2): +// - Maps radius [0,1] to a theta parameter in [0.5, 1.0] (white center) +// - Blends linear and cosine curves for the transition +// - Applies a gray value that controls how white the center is +// - The result: center is near-white, colors saturate quickly +// ----------------------------------------------------------------------- +NolzeHielscherColorKey::Vec3 NolzeHielscherColorKey::direction2Color(const Vec3& direction) const +{ + // 1. Get polar coordinates from the fundamental sector geometry + auto [radius, rho] = m_Sector.polarCoordinates(direction); + + // 2. Hue from azimuthal angle + // First apply boundary-distance-weighted azimuthal correction to smooth + // the transitions between boundary zones and equalize vertex hue sectors. + // Then apply Gaussian CDF correction to expand yellow/cyan/magenta regions. + double rhoCorrected = m_Sector.correctAzimuthalAngle(rho); + double hue = correctHue(rhoCorrected / k_TwoPi); + + // 3. Lightness from radial distance via gray gradient blending + // + // The approach derived from the paper (Appendix A.2): + // theta_mapped = radius_mapped (in [0.5, 1.0] for white center) + // Apply nonlinear blend: th = (2*gg*th + (1-gg)*(1-cos(th*pi)))/2 + // where gg = grayGradient (0.5 default) + // Then compute gray and saturation from the corrected theta + constexpr double k_GrayGradient = 0.5; + constexpr double k_GrayValueWhite = 0.2; // controls how white the center is (lower = more saturated center) + constexpr double k_GrayValueBlack = 0.5; // controls how black the dark center is + + double lHsl = 0.5; // default = fully saturated + double sHsl = 1.0; + + // Common lightness/saturation computation using the color sphere model. + // The radius [0,1] maps to a position on the color sphere: + // Center (r=0) -> white (HSL L=1, desaturated) + // Boundary (r=1) -> fully saturated (HSL L=0.5, full saturation) + // + // The key insight: map radius to the color sphere's polar angle theta, + // then extract HSL from the sphere position. The sphere model: + // theta=0 (north pole) = white, theta=pi/2 (equator) = saturated, theta=pi (south pole) = black + // + // For white center: radius [0,1] -> theta [pi, pi/2] (from pole to equator) + // For black center: radius [0,1] -> theta [0, pi/2] + + auto computeColorFromSphere = [&](double r, double grayValue) -> void { + // Map radius to color sphere theta. + // Use a nonlinear mapping that compresses the neutral center: + // Apply gray gradient blending between linear and cosine curves + double th = (2.0 * k_GrayGradient * r + (1.0 - k_GrayGradient) * (1.0 - std::cos(r * k_Pi))) / 2.0; + + // Compute gray value envelope: peak saturation at th=0.5, reduced at poles + double gray = 1.0 - 2.0 * grayValue * std::abs(th - 0.5); + + // HSL lightness: th=0 maps to L=0.5, th=0.5 maps to L=0.5, th=1 maps to L=0.5 + // Actually: L = (th - 0.5)*gray + 0.5 + // At th=0: L = -0.5*gray + 0.5 (dark) + // At th=0.5: L = 0.5 (fully saturated) + // At th=1: L = 0.5*gray + 0.5 (light/white) + lHsl = (th - 0.5) * gray + 0.5; + + // HSL saturation: derived from the chroma at this sphere position + double denominator = 1.0 - std::abs(2.0 * lHsl - 1.0); + sHsl = (denominator > 1.0e-10) ? gray * (1.0 - std::abs(2.0 * th - 1.0)) / denominator : 0.0; + sHsl = std::clamp(sHsl, 0.0, 1.0); + }; + + if(m_Sector.colorKeyMode() == "standard" || m_Sector.colorKeyMode() == "impossible") + { + // Standard: white center only + // Radius convention: 1 at center, 0 at boundary + // Map to sphere parameter: center(r=1) -> 1.0 (white), boundary(r=0) -> 0.5 (saturated) + double r = 0.5 + radius / 2.0; + computeColorFromSphere(r, k_GrayValueWhite); + } + else if(m_Sector.colorKeyMode() == "extended" && m_SupergroupSector) + { + bool inSupergroup = m_SupergroupSector->isInside(direction); + + if(inSupergroup) + { + auto [sgRadius, sgRho] = m_SupergroupSector->polarCoordinates(direction); + double sgRhoCorrected = m_SupergroupSector->correctAzimuthalAngle(sgRho); + hue = correctHue(sgRhoCorrected / k_TwoPi); + // White center half: center(r=1)->1.0(white), boundary(r=0)->0.5(saturated) + double r = 0.5 + sgRadius / 2.0; + computeColorFromSphere(r, k_GrayValueWhite); + } + else + { + // Black center half: center(r=1)->0.0(black), boundary(r=0)->0.5(saturated) + double rEff = radius; + double r = rEff / 2.0; + computeColorFromSphere(r, k_GrayValueBlack); + } + } + + // 5. Convert HSL to RGB + auto rgb = color::hslToRgb(hue, sHsl, lHsl); + return {rgb[0], rgb[1], rgb[2]}; +} + +// ----------------------------------------------------------------------- +// name +// ----------------------------------------------------------------------- +std::string NolzeHielscherColorKey::name() const +{ + return "NolzeHielscher"; +} + +} // namespace ebsdlib diff --git a/Source/EbsdLib/Utilities/NolzeHielscherColorKey.hpp b/Source/EbsdLib/Utilities/NolzeHielscherColorKey.hpp new file mode 100644 index 00000000..3b8fde34 --- /dev/null +++ b/Source/EbsdLib/Utilities/NolzeHielscherColorKey.hpp @@ -0,0 +1,109 @@ +#pragma once + +#include "EbsdLib/EbsdLib.h" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" +#include "EbsdLib/Utilities/IColorKey.hpp" + +#include +#include +#include + +namespace ebsdlib +{ + +/** + * @brief Nolze-Hielscher IPF color key. + * + * Implements the perceptually improved IPF coloring scheme described in: + * G. Nolze and R. Hielscher, "Orientations - perfectly colored", + * J. Appl. Cryst. (2016), 49, 1786-1802. + * + * Maps a crystal direction (already in the fundamental sector) to an RGB color + * via HSL color space using polar coordinates within the sector. + * + * The algorithm: + * 1. Compute polar coordinates (radius, rho) relative to the sector barycenter. + * 2. Map the azimuthal angle rho to a hue H. + * 3. Map the radial distance to lightness L via a nonlinear function. + * 4. Compute saturation S from L. + * 5. Convert (H, S, L) to RGB. + * + * The center of the sector maps to white and the boundary maps to fully + * saturated colors at lightness 0.5. + */ +class EbsdLib_EXPORT NolzeHielscherColorKey : public IColorKey +{ +public: + /** + * @brief Construct with a fundamental sector geometry. + * @param sector The fundamental sector definition for the desired Laue group. + * @param lambdaL Lightness nonlinearity parameter (default 0.25 per paper). + * @param lambdaS Saturation desaturation parameter (default 0.25 per paper). + */ + explicit NolzeHielscherColorKey(const FundamentalSectorGeometry& sector, double lambdaL = 0.25, double lambdaS = 0.25); + ~NolzeHielscherColorKey() override = default; + + Vec3 direction2Color(const Vec3& direction) const override; + std::string name() const override; + + /** + * @brief Hue speed function v(rho) from paper Appendix A.1, Eq. 5. + * + * Controls how fast hue changes with azimuthal angle, producing perceptual + * uniformity by slowing down near primary hues (0, 120, 240 degrees). + * + * @param rhoDeg Azimuthal angle in degrees + * @param distance Boundary distance at this azimuth (scaling factor) + * @return The hue speed value (always positive) + */ + static double hueSpeedFunction(double rhoDeg, double distance); + + /** + * @brief Raw lightness function from paper Appendix A.2. + * + * L(theta) = lambdaL * (theta / (pi/2)) + (1 - lambdaL) * sin^2(theta/2) + * + * @param theta Angle from center, in [0, pi/2] + * @param lambdaL Nonlinearity parameter (0 = pure sin^2, 1 = linear) + * @return Raw lightness value in [0, ~0.625] for lambdaL=0.25 + */ + static double lightness(double theta, double lambdaL); + + /** + * @brief Saturation function from paper Appendix A.2. + * + * S = 1 - 2 * lambdaS * |L - 0.5| + * + * Produces maximum saturation (1.0) at L=0.5 and slightly desaturated + * values near L=0 (black) and L=1 (white). + * + * @param L HSL lightness value in [0, 1] + * @param lambdaS Desaturation parameter + * @return Saturation in [0, 1] + */ + static double saturation(double L, double lambdaS); + + /** + * @brief Apply Gaussian-based hue correction to expand compressed yellow/cyan regions. + * + * Uses a precomputed CDF of the hue speed function to redistribute hue values + * so that all six color sectors (R, Y, G, C, B, M) get proportional area. + * + * @param hueIn Raw hue in [0, 1) + * @return Corrected hue in [0, 1) + */ + double correctHue(double hueIn) const; + +private: + FundamentalSectorGeometry m_Sector; + double m_LambdaL; + double m_LambdaS; + std::unique_ptr m_SupergroupSector; // null for standard/impossible + + // Precomputed hue correction CDF table (Gaussian-based redistribution) + static constexpr size_t k_HueCdfSize = 1000; + std::array m_HueCdf = {}; + void precomputeHueCdf(); +}; + +} // namespace ebsdlib diff --git a/Source/EbsdLib/Utilities/PUCMColorKey.cpp b/Source/EbsdLib/Utilities/PUCMColorKey.cpp new file mode 100644 index 00000000..9eb22001 --- /dev/null +++ b/Source/EbsdLib/Utilities/PUCMColorKey.cpp @@ -0,0 +1,147 @@ +#include "EbsdLib/Utilities/PUCMColorKey.hpp" + +// Vendored wlenthe header has -Wshadow tripwires (e.g. local arrays +// named 'n' inside cubicToHemi where the enclosing function parameter +// is also 'n'). Suppress just for the include so we can keep the +// upstream file byte-identical for future re-syncs. +#if defined(__clang__) +#pragma clang diagnostic push +#pragma clang diagnostic ignored "-Wshadow" +#elif defined(__GNUC__) +#pragma GCC diagnostic push +#pragma GCC diagnostic ignored "-Wshadow" +#endif +#include "EbsdLib/Utilities/wlenthe_orientation_coloring.hpp" +#if defined(__clang__) +#pragma clang diagnostic pop +#elif defined(__GNUC__) +#pragma GCC diagnostic pop +#endif + +#include +#include +#include + +namespace ebsdlib +{ + +namespace +{ +PUCMColorKey::Vec3 dispatchPucm(int group, const PUCMColorKey::Vec3& direction) +{ + // Stack copies because the wlenthe API takes raw pointers. + double n[3] = {direction[0], direction[1], direction[2]}; + double rgb[3] = {0.0, 0.0, 0.0}; + + switch(static_cast(group)) + { + case 0: // Triclinic + coloring::hemiIpf(n, rgb); + break; + case 1: // Monoclinic 2/m + coloring::cyclicIpf(n, rgb); + break; + case 2: // Orthorhombic mmm + coloring::dihedralIpf(n, rgb); + break; + case 3: // Trigonal -3 + coloring::cyclicIpf(n, rgb); + break; + case 4: // Trigonal -3m + coloring::dihedralIpf(n, rgb); + break; + case 5: // Tetragonal 4/m + coloring::cyclicIpf(n, rgb); + break; + case 6: // Tetragonal 4/mmm + coloring::dihedralIpf(n, rgb); + break; + case 7: // Hexagonal 6/m + coloring::cyclicIpf(n, rgb); + break; + case 8: // Hexagonal 6/mmm + coloring::dihedralIpf(n, rgb); + break; + case 9: // Cubic m-3 + coloring::cubicLowIpf(n, rgb); + break; + case 10: // Cubic m-3m + coloring::cubicIpf(n, rgb); + break; + default: + return {0.0, 0.0, 0.0}; + } + return {rgb[0], rgb[1], rgb[2]}; +} + +int groupFromRotationPointGroup(const std::string& rpg) +{ + if(rpg == "1") + return 0; + if(rpg == "2") + return 1; + if(rpg == "222") + return 2; + if(rpg == "3") + return 3; + if(rpg == "32") + return 4; + if(rpg == "4") + return 5; + if(rpg == "422") + return 6; + if(rpg == "6") + return 7; + if(rpg == "622") + return 8; + if(rpg == "23") + return 9; + if(rpg == "432") + return 10; + throw std::invalid_argument("PUCMColorKey: unsupported rotation point group '" + rpg + "'"); +} +} // namespace + +PUCMColorKey::PUCMColorKey(const std::string& rotationPointGroup) +: m_Group(static_cast(groupFromRotationPointGroup(rotationPointGroup))) +, m_RotationPointGroup(rotationPointGroup) +{ + // The wlenthe coloring routines lazily populate static lookup tables + // (cubicToHemi / cubicLowToHemi) on first call. Under ParallelDataAlgorithm + // multiple worker threads race that init and corrupt the table, producing a + // free_small_botch crash. Warm the per-group dispatch path once here so the + // tables are fully populated before any concurrent reader can see them -- + // PUCMColorKey instances are themselves constructed under C++11 + // magic-statics locks (one per LaueOps subclass singleton), so this + // construction-time warmup is serialized. + const Vec3 k_WarmupDir = {0.5, 0.3, 0.7}; + (void)dispatchPucm(static_cast(m_Group), k_WarmupDir); +} + +PUCMColorKey::Vec3 PUCMColorKey::direction2Color(const Vec3& direction) const +{ + return dispatchPucm(static_cast(m_Group), direction); +} + +PUCMColorKey::Vec3 PUCMColorKey::direction2Color(double eta, double chi, const Vec3& angleLimits) const +{ + // PUCM operates on a Cartesian crystal direction directly. Convert + // (eta, chi) -> unit vector. angleLimits is unused — PUCM has its own + // per-Laue-class fundamental-sector geometry baked into the dispatch. + (void)angleLimits; + const double s = std::sin(chi); + const Vec3 dir = {s * std::cos(eta), s * std::sin(eta), std::cos(chi)}; + return direction2Color(dir); +} + +std::string PUCMColorKey::name() const +{ + return "PUCM (" + m_RotationPointGroup + ")"; +} + +std::string PUCMColorKey::rotationPointGroup() const +{ + return m_RotationPointGroup; +} + +} // namespace ebsdlib diff --git a/Source/EbsdLib/Utilities/PUCMColorKey.hpp b/Source/EbsdLib/Utilities/PUCMColorKey.hpp new file mode 100644 index 00000000..488ba2a9 --- /dev/null +++ b/Source/EbsdLib/Utilities/PUCMColorKey.hpp @@ -0,0 +1,80 @@ +#pragma once + +#include "EbsdLib/EbsdLib.h" +#include "EbsdLib/Utilities/IColorKey.hpp" + +#include +#include + +namespace ebsdlib +{ + +/** + * @brief Perceptually Uniform Color Map (PUCM) IPF color key. + * + * Implements the EDAX OIM Analysis "perceptually uniform" IPF color + * scheme by adapting William Lenthe's reference C++ implementation + * (wlenthe/crystallography, BSD-3) of: + * Nolze, Gert and Hielscher Ralf, "Orientations Perfectly Colors," + * J. Appl. Crystallogr. 49.5 (2016): 1786–1802. + * + * The wlenthe header is vendored verbatim at + * EbsdLib/Utilities/wlenthe_orientation_coloring.hpp; this class is a + * thin dispatch layer that selects the correct entry point per + * Laue class. + * + * Rotation point group → wlenthe dispatch: + * "1" (-1) → coloring::hemiIpf + * "2" (2/m) → coloring::cyclicIpf + * "222" (mmm) → coloring::dihedralIpf + * "3" (-3) → coloring::cyclicIpf + * "32" (-3m) → coloring::dihedralIpf + * "4" (4/m) → coloring::cyclicIpf + * "422" (4/mmm) → coloring::dihedralIpf + * "6" (6/m) → coloring::cyclicIpf + * "622" (6/mmm) → coloring::dihedralIpf + * "23" (m-3) → coloring::cubicLowIpf + * "432" (m-3m) → coloring::cubicIpf + */ +class EbsdLib_EXPORT PUCMColorKey : public IColorKey +{ +public: + /** + * @brief Construct a PUCM color key bound to a specific Laue class. + * @param rotationPointGroup String matching LaueOps::getRotationPointGroup() + * (one of: "1", "2", "222", "3", "32", "4", "422", "6", "622", + * "23", "432"). Throws std::invalid_argument otherwise. + */ + explicit PUCMColorKey(const std::string& rotationPointGroup); + ~PUCMColorKey() override = default; + + Vec3 direction2Color(const Vec3& direction) const override; + Vec3 direction2Color(double eta, double chi, const Vec3& angleLimits) const override; + std::string name() const override; + + std::string rotationPointGroup() const; + +private: + // The wlenthe dispatch is selected by the rotation-point-group string; + // we resolve it to an internal enum at construction so direction2Color + // is just a switch. + enum class Group : int + { + Triclinic, // -1 hemiIpf + Monoclinic, // 2/m cyclicIpf<2> + Orthorhombic, // mmm dihedralIpf<2> + TrigonalLow, // -3 cyclicIpf<3> + TrigonalHigh, // -3m dihedralIpf<3> + TetragonalLow, // 4/m cyclicIpf<4> + TetragonalHigh, // 4/mmm dihedralIpf<4> + HexagonalLow, // 6/m cyclicIpf<6> + HexagonalHigh, // 6/mmm dihedralIpf<6> + CubicLow, // m-3 cubicLowIpf + CubicHigh // m-3m cubicIpf + }; + + Group m_Group; + std::string m_RotationPointGroup; +}; + +} // namespace ebsdlib diff --git a/Source/EbsdLib/Utilities/PngWriter.cpp b/Source/EbsdLib/Utilities/PngWriter.cpp new file mode 100644 index 00000000..2629cbb8 --- /dev/null +++ b/Source/EbsdLib/Utilities/PngWriter.cpp @@ -0,0 +1,41 @@ +#include "EbsdLib/Utilities/PngWriter.h" + +#define STB_IMAGE_WRITE_IMPLEMENTATION +#include + +namespace PngWriter +{ +std::pair WriteColorImage(const std::string& filepath, int32_t width, int32_t height, uint16_t samplesPerPixel, const uint8_t* data) +{ + if(width <= 0 || height <= 0 || data == nullptr) + { + return {-1, "PngWriter::WriteColorImage: invalid dimensions or null data"}; + } + if(samplesPerPixel != 3 && samplesPerPixel != 4) + { + return {-1, "PngWriter::WriteColorImage: samplesPerPixel must be 3 (RGB) or 4 (RGBA)"}; + } + const int strideBytes = width * samplesPerPixel; + const int ok = stbi_write_png(filepath.c_str(), width, height, samplesPerPixel, data, strideBytes); + if(ok == 0) + { + return {-1, "PngWriter::WriteColorImage: stbi_write_png failed for path " + filepath}; + } + return {0, "OK"}; +} + +std::pair WriteGrayScaleImage(const std::string& filepath, int32_t width, int32_t height, const uint8_t* data) +{ + if(width <= 0 || height <= 0 || data == nullptr) + { + return {-1, "PngWriter::WriteGrayScaleImage: invalid dimensions or null data"}; + } + const int strideBytes = width; + const int ok = stbi_write_png(filepath.c_str(), width, height, 1, data, strideBytes); + if(ok == 0) + { + return {-1, "PngWriter::WriteGrayScaleImage: stbi_write_png failed for path " + filepath}; + } + return {0, "OK"}; +} +} // namespace PngWriter diff --git a/Source/EbsdLib/Utilities/PngWriter.h b/Source/EbsdLib/Utilities/PngWriter.h new file mode 100644 index 00000000..b724467d --- /dev/null +++ b/Source/EbsdLib/Utilities/PngWriter.h @@ -0,0 +1,32 @@ +#pragma once + +#include +#include +#include + +#include "EbsdLib/EbsdLib.h" + +namespace PngWriter +{ +/** + * @brief WriteColorImage Writes an RGB or RGBA image to a PNG file. + * @param filepath Output file path + * @param width Width of Image in pixels + * @param height Height of Image in pixels + * @param samplesPerPixel RGB=3, RGBA=4 + * @param data The image data, row-major, 8-bit per channel + * @return Pair of (status, message). status == 0 on success. + */ +EbsdLib_EXPORT std::pair WriteColorImage(const std::string& filepath, int32_t width, int32_t height, uint16_t samplesPerPixel, const uint8_t* data); + +/** + * @brief WriteGrayScaleImage Writes a single-channel 8-bit image to a PNG file. + * @param filepath Output file path + * @param width Width of Image in pixels + * @param height Height of Image in pixels + * @param data The image data, row-major, 8-bit single channel + * @return Pair of (status, message). status == 0 on success. + */ +EbsdLib_EXPORT std::pair WriteGrayScaleImage(const std::string& filepath, int32_t width, int32_t height, const uint8_t* data); + +}; // namespace PngWriter diff --git a/Source/EbsdLib/Utilities/PoleFigureCompositor.cpp b/Source/EbsdLib/Utilities/PoleFigureCompositor.cpp index 0d5f38b1..0f9a0ad3 100644 --- a/Source/EbsdLib/Utilities/PoleFigureCompositor.cpp +++ b/Source/EbsdLib/Utilities/PoleFigureCompositor.cpp @@ -123,6 +123,7 @@ std::vector PoleFigureCompositor::generatePoleFigures(C pfConfig.order = config.order; pfConfig.phaseName = config.phaseName; pfConfig.FlipFinalImage = config.flipFinalImage; + pfConfig.hexConvention = config.hexConvention; std::vector orientationOps = LaueOps::GetAllOrientationOps(); if(config.laueOpsIndex >= orientationOps.size()) @@ -263,7 +264,7 @@ void PoleFigureCompositor::drawPoleFigure(canvas_ity::canvas& context, const UIn context.set_font(const_cast(latoBold.data()), static_cast(latoBold.size()), fontPtSize); context.set_color(canvas_ity::fill_style, 0.0f, 0.0f, 0.0f, 1.0f); context.text_baseline = canvas_ity::alphabetic; - context.fill_text("X", origin[0] + margins * 2.0f + imageSize, origin[1] + fontPtSize * 2.25f + margins * 2.0f + imageSize / 2.0f); + context.fill_text("TD", origin[0] + margins * 1.5f + imageSize, origin[1] + fontPtSize * 2.25f + margins * 2.0f + imageSize / 2.0f); context.close_path(); // "Y" axis label @@ -271,8 +272,8 @@ void PoleFigureCompositor::drawPoleFigure(canvas_ity::canvas& context, const UIn context.set_font(const_cast(latoBold.data()), static_cast(latoBold.size()), fontPtSize); context.set_color(canvas_ity::fill_style, 0.0f, 0.0f, 0.0f, 1.0f); context.text_baseline = canvas_ity::alphabetic; - const float yFontWidth = context.measure_text("Y"); - context.fill_text("Y", origin[0] + margins - (0.5f * yFontWidth) + imageSize / 2.0f, origin[1] + fontPtSize * 2.0f + margins); + const float yFontWidth = context.measure_text("RD"); + context.fill_text("RD", origin[0] + margins - (0.5f * yFontWidth) + imageSize / 2.0f, origin[1] + fontPtSize * 2.0f + margins); context.close_path(); // Direction label (e.g., "<001>" displayed as "(001)") @@ -401,7 +402,8 @@ void PoleFigureCompositor::drawInfoBlock(canvas_ity::canvas& context, const Comp fmt::format("Laue Group: {}", laueGroupName), fmt::format("Upper & Lower:"), fmt::format("Samples: {}", config.eulers != nullptr ? config.eulers->getNumberOfTuples() : 0), - fmt::format("Lambert Sq. Dim: {}", config.lambertDim)}; + fmt::format("Lambert Sq. Dim: {}", config.lambertDim), + fmt::format("Hex/Trig Convention: {}", config.hexConvention == ebsdlib::HexConvention::XParallelAStar ? "x||a*" : "x||a")}; float heightInc = 1.0f; for(const auto& label : labels) diff --git a/Source/EbsdLib/Utilities/PoleFigureCompositor.h b/Source/EbsdLib/Utilities/PoleFigureCompositor.h index d20deff2..247a8086 100644 --- a/Source/EbsdLib/Utilities/PoleFigureCompositor.h +++ b/Source/EbsdLib/Utilities/PoleFigureCompositor.h @@ -36,6 +36,7 @@ #include #include "EbsdLib/Core/EbsdDataArray.hpp" +#include "EbsdLib/Core/EbsdLibConstants.h" #include "EbsdLib/EbsdLib.h" namespace canvas_ity @@ -86,6 +87,14 @@ struct EbsdLib_EXPORT CompositePoleFigureConfiguration_t std::string phaseName; ///< Material/phase name for the legend int32_t phaseNumber = 1; ///< Phase number for the legend std::string title; ///< Title text drawn at the top of the composite image + + // --- Convention parameters --- + /// Cartesian basis convention for hex/trig phases. Default preserves + /// current EbsdLib v3 behavior (X||a*) while plumbing is being added; + /// this default flips to XParallelA in PR 3 once internal SymOps tables + /// are reorganized. Ignored for cubic / tetragonal / orthorhombic / + /// monoclinic / triclinic Laue classes. See ebsdlib::HexConvention. + ebsdlib::HexConvention hexConvention = ebsdlib::HexConvention::XParallelAStar; }; /** diff --git a/Source/EbsdLib/Utilities/PoleFigureUtilities.cpp b/Source/EbsdLib/Utilities/PoleFigureUtilities.cpp index d2ae2754..f40198a5 100644 --- a/Source/EbsdLib/Utilities/PoleFigureUtilities.cpp +++ b/Source/EbsdLib/Utilities/PoleFigureUtilities.cpp @@ -196,7 +196,7 @@ void PoleFigureUtilities::GenerateHexPoleFigures(ebsdlib::FloatArrayType* eulers // Generate the coords on the sphere HexagonalOps ops; - ops.generateSphereCoordsFromEulers(eulers, xyz0001.get(), xyz1010.get(), xyz1120.get()); + ops.generateSphereCoordsFromEulers(eulers, xyz0001.get(), xyz1010.get(), xyz1120.get(), ebsdlib::HexConvention::XParallelAStar); #if WRITE_XYZ_SPHERE_COORD_VTK writeVtkFile(xyz0001.get(), "c:/Users/GroebeMA/Desktop/Sphere_XYZ_FROM_EULER_0001.vtk"); writeVtkFile(xyz1010.get(), "c:/Users/GroebeMA/Desktop/Sphere_XYZ_FROM_EULER_1010.vtk"); diff --git a/Source/EbsdLib/Utilities/PoleFigureUtilities.h b/Source/EbsdLib/Utilities/PoleFigureUtilities.h index 81f55d9b..72653619 100644 --- a/Source/EbsdLib/Utilities/PoleFigureUtilities.h +++ b/Source/EbsdLib/Utilities/PoleFigureUtilities.h @@ -36,6 +36,7 @@ #pragma once #include "EbsdLib/Core/EbsdDataArray.hpp" +#include "EbsdLib/Core/EbsdLibConstants.h" #include "EbsdLib/EbsdLib.h" #include "EbsdLib/Math/Matrix3X1.hpp" @@ -76,6 +77,13 @@ struct PoleFigureConfiguration_t std::vector order; ///<* The order that the pole figures should appear in. std::string phaseName; ///<* The Names of the phase bool FlipFinalImage; ///<* If TRUE, the final image will be flipped across the X Axis so that +Y axis points UP + + ///<* Cartesian basis convention for hex/trig phases. Default preserves + /// current EbsdLib v3 behavior (X||a*) while plumbing is being added; + /// this default flips to XParallelA in PR 3 once internal SymOps tables + /// are reorganized. Ignored for cubic / tetragonal / orthorhombic / + /// monoclinic / triclinic Laue classes. See ebsdlib::HexConvention. + ebsdlib::HexConvention hexConvention = ebsdlib::HexConvention::XParallelAStar; }; /** diff --git a/Source/EbsdLib/Utilities/SourceList.cmake b/Source/EbsdLib/Utilities/SourceList.cmake index 0e7fc728..bcf04484 100644 --- a/Source/EbsdLib/Utilities/SourceList.cmake +++ b/Source/EbsdLib/Utilities/SourceList.cmake @@ -5,6 +5,7 @@ set(EbsdLib_${DIR_NAME}_MOC_HDRS ) set(EbsdLib_${DIR_NAME}_HDRS + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/InversePoleFigureUtilities.h ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/PoleFigureUtilities.h ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/ModifiedLambertProjection.h ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/ModifiedLambertProjectionArray.h @@ -16,6 +17,7 @@ set(EbsdLib_${DIR_NAME}_HDRS ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/EbsdStringUtils.hpp ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/ToolTipGenerator.h ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/TiffWriter.h + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/PngWriter.h ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/FiraSansRegular.hpp ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/Fonts.hpp ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/LatoBold.hpp @@ -23,9 +25,19 @@ set(EbsdLib_${DIR_NAME}_HDRS ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/CanvasUtilities.hpp ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/PoleFigureCompositor.h ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/inipp.h + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/ColorSpaceUtils.hpp + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/IColorKey.hpp + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/FundamentalSectorGeometry.hpp + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/TSLColorKey.hpp + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/NolzeHielscherColorKey.hpp + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/GriddedColorKey.hpp + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/PUCMColorKey.hpp + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/wlenthe_orientation_coloring.hpp + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/ImageCrop.hpp ) set(EbsdLib_${DIR_NAME}_SRCS + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/InversePoleFigureUtilities.cpp ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/PoleFigureUtilities.cpp ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/ModifiedLambertProjection.cpp ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/ModifiedLambertProjectionArray.cpp @@ -36,9 +48,16 @@ set(EbsdLib_${DIR_NAME}_SRCS ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/ColorUtilities.cpp ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/ToolTipGenerator.cpp ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/TiffWriter.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/PngWriter.cpp ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/CanvasUtilities.cpp ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/Fonts.cpp ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/PoleFigureCompositor.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/FundamentalSectorGeometry.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/TSLColorKey.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/NolzeHielscherColorKey.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/GriddedColorKey.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/PUCMColorKey.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/EbsdLib/${DIR_NAME}/ImageCrop.cpp ) # # QT5_WRAP_CPP( EbsdLib_Generated_MOC_SRCS ${EbsdLib_Utilities_MOC_HDRS} ) # set_source_files_properties( ${EbsdLib_Generated_MOC_SRCS} PROPERTIES HEADER_FILE_ONLY TRUE) diff --git a/Source/EbsdLib/Utilities/TSLColorKey.cpp b/Source/EbsdLib/Utilities/TSLColorKey.cpp new file mode 100644 index 00000000..c3ffd1d0 --- /dev/null +++ b/Source/EbsdLib/Utilities/TSLColorKey.cpp @@ -0,0 +1,53 @@ +#include "EbsdLib/Utilities/TSLColorKey.hpp" + +#include +#include + +namespace ebsdlib +{ + +TSLColorKey::Vec3 TSLColorKey::direction2Color(double eta, double chi, const Vec3& angleLimits) const +{ + double etaMin = angleLimits[0]; + double etaMax = angleLimits[1]; + double chiMax = angleLimits[2]; + + double r = 1.0 - chi / chiMax; + double b = std::abs(eta - etaMin) / (etaMax - etaMin); + double g = 1.0 - b; + g *= chi / chiMax; + b *= chi / chiMax; + + r = std::sqrt(r); + g = std::sqrt(g); + b = std::sqrt(b); + + double maxVal = std::max({r, g, b}); + if(maxVal > 0.0) + { + r /= maxVal; + g /= maxVal; + b /= maxVal; + } + + return {std::clamp(r, 0.0, 1.0), std::clamp(g, 0.0, 1.0), std::clamp(b, 0.0, 1.0)}; +} + +TSLColorKey::Vec3 TSLColorKey::direction2Color(const Vec3& direction) const +{ + double chi = std::acos(std::clamp(direction[2], -1.0, 1.0)); + double eta = std::atan2(direction[1], direction[0]); + return direction2Color(eta, chi, m_DefaultAngleLimits); +} + +void TSLColorKey::setDefaultAngleLimits(const Vec3& limits) +{ + m_DefaultAngleLimits = limits; +} + +std::string TSLColorKey::name() const +{ + return "TSL"; +} + +} // namespace ebsdlib diff --git a/Source/EbsdLib/Utilities/TSLColorKey.hpp b/Source/EbsdLib/Utilities/TSLColorKey.hpp new file mode 100644 index 00000000..5652c7da --- /dev/null +++ b/Source/EbsdLib/Utilities/TSLColorKey.hpp @@ -0,0 +1,30 @@ +#pragma once + +#include "EbsdLib/EbsdLib.h" +#include "EbsdLib/Utilities/IColorKey.hpp" + +namespace ebsdlib +{ + +/** + * @brief Traditional TSL/HKL IPF color key. + * Refactored from LaueOps::computeIPFColor(). + * The spherical coordinate overload is the primary interface for this key. + */ +class EbsdLib_EXPORT TSLColorKey : public IColorKey +{ +public: + TSLColorKey() = default; + ~TSLColorKey() override = default; + + Vec3 direction2Color(double eta, double chi, const Vec3& angleLimits) const override; + Vec3 direction2Color(const Vec3& direction) const override; + std::string name() const override; + + void setDefaultAngleLimits(const Vec3& limits); + +private: + Vec3 m_DefaultAngleLimits = {0.0, 0.7854, 0.6155}; +}; + +} // namespace ebsdlib diff --git a/Source/EbsdLib/Utilities/wlenthe_orientation_coloring.hpp b/Source/EbsdLib/Utilities/wlenthe_orientation_coloring.hpp new file mode 100644 index 00000000..66b9952f --- /dev/null +++ b/Source/EbsdLib/Utilities/wlenthe_orientation_coloring.hpp @@ -0,0 +1,559 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * * + * Copyright (c) 2017, William C. Lenthe * + * All rights reserved. * + * * + * Redistribution and use in source and binary forms, with or without * + * modification, are permitted provided that the following conditions are met: * + * * + * 1. Redistributions of source code must retain the above copyright notice, this * + * list of conditions and the following disclaimer. * + * * + * 2. Redistributions in binary form must reproduce the above copyright notice, * + * this list of conditions and the following disclaimer in the documentation * + * and/or other materials provided with the distribution. * + * * + * 3. Neither the name of the copyright holder nor the names of its * + * contributors may be used to endorse or promote products derived from * + * this software without specific prior written permission. * + * * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" * + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE * + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE * + * DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE * + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL * + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR * + * SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER * + * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, * + * OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE * + * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. * + * * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +// orientation coloring routines based on +// -Nolze, Gert and Hielscher Ralf. "Orientations Perfectly Colors." J. Appl. Crystallogr. 49.5 (2016): 1786-1802. +// -matlab implementation of routines by Ralf Hielscher (https://github.com/mtex-toolbox/mtex) + +#ifndef _coloring_h_ +#define _coloring_h_ + +#include +#include +#include +#include +#include + +namespace coloring +{ +template +inline void hsv2rgb(T const* const hsv, T* const rgb) +{ + const T c = hsv[1] * hsv[2]; + const T x = c * (T(1) - fabs(fmod(T(6) * hsv[0], T(2)) - T(1))); + const T d = hsv[2] - c; + switch(((int)std::floor(T(6) * hsv[0])) % 6) + { + case 0: + rgb[0] = c; + rgb[1] = x; + rgb[2] = T(0); + break; + case 1: + rgb[0] = x; + rgb[1] = c; + rgb[2] = T(0); + break; + case 2: + rgb[0] = T(0); + rgb[1] = c; + rgb[2] = x; + break; + case 3: + rgb[0] = T(0); + rgb[1] = x; + rgb[2] = c; + break; + case 4: + rgb[0] = x; + rgb[1] = T(0); + rgb[2] = c; + break; + case 5: + rgb[0] = c; + rgb[1] = T(0); + rgb[2] = x; + break; + } + std::for_each(rgb, rgb + 3, [d](T& i) { i += d; }); + std::for_each(rgb, rgb + 3, [](T& i) { + if(i > T(1)) + i = T(1); + else if(i < T(0)) + i = T(0); + }); +} + +template +inline void hsl2hsv(T const* const hsl, T* const hsv) +{ + const T l = hsl[2]; + const T s = hsl[1] * (hsl[2] < T(0.5) ? hsl[2] : T(1) - hsl[2]); + hsv[0] = hsl[0]; + hsv[2] = s + hsl[2]; + hsv[1] = hsv[2] > T(0) ? T(2) * s / hsv[2] : T(0); +} + +template +inline void hsl2rgb(T const* const hsl, T* const rgb) +{ + hsl2hsv(hsl, rgb); + hsv2rgb(rgb, rgb); +} + +namespace ipf +{ +template +struct Constants +{ + static const T pi; + static const T pi2; + static const T r2; +}; + +template +const T Constants::pi = T(2) * std::acos(T(0)); +template +const T Constants::pi2 = T(4) * std::acos(T(0)); +template +const T Constants::r2 = std::sqrt(T(2)); + +// math helpers +template +void unitCartesianToSpherical(T const* const n, T& theta, T& phi) +{ + theta = atan2(n[1], n[0]); + if(theta < T(0)) + theta += Constants::pi2; + phi = std::acos(n[2]); +} + +template +void sphericalToUnitCartesian(const T theta, const T phi, T* const n) +{ + const T s = std::sin(phi); + n[0] = std::cos(theta) * s; + n[1] = std::sin(theta) * s; + n[2] = std::cos(phi); +} + +template +void cross(T const* const v1, T const* const v2, T* const x) +{ + x[0] = v1[1] * v2[2] - v1[2] * v2[1]; + x[1] = v1[2] * v2[0] - v1[0] * v2[2]; + x[2] = v1[0] * v2[1] - v1[1] * v2[0]; +} + +// move to dihedral triangle, returns true/false if actually inside / reflected inside +template +bool cyclicTriangle(T const* const n, T* const nTri) +{ // returns true/false if inside/outside corresponding dihedral triangle + // convert to spherical coordinates + T theta, phi; + unitCartesianToSpherical(n, theta, phi); + + // bring to cyclic sterographic triangle + bool dihedral = true; + theta = std::fmod(theta, Constants::pi2 / N); + + // bring to dihedral sterographic triangle + if(theta > Constants::pi / N) + { + theta = Constants::pi2 / N - theta; + dihedral = false; + } + + // bring to northern hemisphere + if(n[2] < T(0)) + { + phi = Constants::pi - phi; + dihedral = !dihedral; + + if(1 == N % 2) + { + theta = Constants::pi / N - theta; + } + } + + // convert back to cartesian coordinates + sphericalToUnitCartesian(theta, phi, nTri); + return dihedral; +} + +template +void dihedralTriangle(T const* const n, T* const nTri) +{ + // move to northern hemisphere + std::copy(n, n + 3, nTri); + if(nTri[2] < T(0)) + std::transform(nTri, nTri + 3, nTri, std::negate()); + + // convert to spherical coordinates + T theta, phi; + unitCartesianToSpherical(nTri, theta, phi); + + // bring to sterographic triangle + theta = std::fmod(theta, Constants::pi2 / N); + if(theta > Constants::pi / N) + theta = Constants::pi2 / N - theta; + phi = std::fabs(phi); + + // convert back to cartesian coordinates + sphericalToUnitCartesian(theta, phi, nTri); +} + +template +bool cubicLowTriangle(T const* const n, T* const nTri) +{ + std::transform(n, n + 3, nTri, (T(*)(T)) & std::fabs); + if(nTri[0] >= nTri[1]) + { + if(nTri[0] > nTri[2]) + std::rotate(nTri, nTri + 1, nTri + 3); + } + else + { + if(nTri[1] > nTri[2]) + std::rotate(nTri, nTri + 2, nTri + 3); + } + if(nTri[1] > nTri[0]) + { + std::swap(nTri[0], nTri[1]); + return false; + } + return true; +} + +template +void cubicTriangle(T const* const n, T* const nTri) +{ + std::transform(n, n + 3, nTri, (T(*)(T)) & std::fabs); + std::sort(nTri, nTri + 3); + std::swap(nTri[0], nTri[1]); +} + +// convert a unit direction in a fundamental sector to fractional (0-1) polar coordinates on the northern hemisphere +template +void fundToHemi(T const* const n, // unit direction to color + T& theta, // distance from north pole + T& rho, // polar angle + T const center[3], // unit direction of fundamental sector center + T const normals[3][3], // unit directions of 3 plane normals defining fundamental sector boundary + T const rx[3], // direction of red from center + T const ry[3], // direction perpendicular to rx and center + std::vector const& irho, // x axis of interpolation array for hue correction + std::vector const& omega) +{ // y axis of interpolation array for hue correction + // get plane defined by center + direction + T vxc[3]; + cross(n, center, vxc); + T mag = std::sqrt(std::inner_product(vxc, vxc + 3, vxc, T(0))); + std::for_each(vxc, vxc + 3, [mag](T& i) { i /= mag; }); + + // compute distance to each edge + T rMin(1), v[3]; + for(size_t i = 0; i < 3; i++) + { + cross(vxc, normals[i], v); + mag = std::sqrt(std::inner_product(v, v + 3, v, T(0))); + std::for_each(v, v + 3, [mag](T& i) { i /= mag; }); + T r = std::acos(-std::inner_product(n, n + 3, v, T(0))) / std::acos(-std::inner_product(center, center + 3, v, T(0))); + if(r < rMin) + rMin = r; + } + theta = T(1) - rMin; + + // compute angle from red direction + std::transform(n, n + 3, center, v, std::minus()); + mag = std::sqrt(std::inner_product(v, v + 3, v, T(0))); + std::for_each(v, v + 3, [mag](T& i) { i /= mag; }); + rho = std::atan2(std::inner_product(ry, ry + 3, v, T(0)), std::inner_product(rx, rx + 3, v, T(0))) / Constants::pi2; + if(rho < 0.0) + rho += T(1); + + // apply adaptive hue gradient + make p001,100,v] [r,g,b] + if(!(rho <= irho.front() || rho >= irho.back())) + { + size_t index = std::distance(irho.begin(), std::upper_bound(irho.begin(), irho.end(), rho)); + rho = omega[index - 1] + ((irho[index] - rho) / (irho[index] - irho[index - 1])) * (omega[index] - omega[index - 1]); + } +} + +// convert a unit direction in a dihedral fundamental sector to fractional (0-1) polar coordinates on the northern hemisphere +template +void dihedralToHemi(T const* const n, T& theta, T& rho) +{ + // compute constants on first execution + static_assert(N == 2 || N == 3 || N == 4 || N == 6, "dihedral sector -> hemisphere mapping is only defined for N = 2, 3, 4, or 6"); + static const T angle = T(2) * std::acos(T(0)) / T(N); // pi/N + static const T s = std::sin(angle); + static const T c = std::cos(angle); + static const T c2_3 = T(3) + T(2) * c; + static const T kc = T(1) / std::sqrt(c2_3); + static const T kt = std::tan(angle / T(2)); + static const T krx = std::sqrt(T(1) - T(1) / c2_3); + static const T kry = std::fabs(std::cos(angle / T(2))); + + static const T center[3] = {(T(1) + c) * kc, s * kc, kc}; // barycenter of fundamental sector + static const T rx[3] = {-krx / T(2), -krx * kt / T(2), krx}; // normal of cutting plane that isn't +z or +y + static const T ry[3] = {kry * kt, -kry, T(0)}; // normal of cutting plane that isn't +z or +y + static const T normals[3][3] = { + {T(0), T(1), T(0)}, // bottom boundary + {T(0), T(0), T(1)}, // right boundary + {s, -c, T(0)} //'left' boundary + }; + + // build lookup table for distance correction to rho + static std::vector irho, omega; + if(omega.empty()) + { + // create evenly spaced list for angle from 0->1 + omega.resize(1000); + irho.resize(omega.size()); + std::iota(irho.begin(), irho.end(), T(0)); + std::for_each(irho.begin(), irho.end(), [](T& i) { i /= T(irho.size() - 1); }); + const T rhoG = std::fmod(std::atan2(T(2) * kry * kt, -std::sqrt(T(1) - T(1) / c2_3)) + Constants::pi2, Constants::pi2) / Constants::pi2; // angle of 100 + const T rhoB = + std::fmod(std::atan2(-T(2) * kry * kt, -std::sqrt(T(1) - T(1) / c2_3)) + Constants::pi2, Constants::pi2) / Constants::pi2; // angle of vertex of fundamental sector that isn't +z or +x + + // compute distance to edge at each engle + for(size_t i = 0; i < omega.size() - 1; i++) + { + // create vector normal to center at angle irho[i] + T n[3]; + T sn = std::sin(Constants::pi2 * irho[i]); + T cs = std::cos(Constants::pi2 * irho[i]); + std::transform(rx, rx + 3, ry, n, [sn, cs](T i, T j) { return i * sn - j * cs; }); + + if(irho[i] < rhoG) + { // bottom is closest edge (+y cutting plane) + omega[i + 1] = std::acos((n[2] * center[0] - n[0] * center[2]) / std::hypot(n[0], n[2])); + } + else if(irho[i] < rhoB) + { // right is cosest edge (+z cutting plane) + omega[i + 1] = std::acos((-n[1] * center[0] + n[0] * center[1]) / std::hypot(n[1], n[0])); + } + else + { + T normxn[3]; + cross(normals[2], n, normxn); + T mag = std::sqrt(std::inner_product(normxn, normxn + 3, normxn, T(0))); + omega[i + 1] = std::acos(std::inner_product(normxn, normxn + 3, center, T(0)) / mag); + } + } + + // get offset to green and blue points + const size_t indG = std::distance(irho.begin(), std::upper_bound(irho.begin(), irho.end(), rhoG)); + const size_t indB = std::distance(irho.begin(), std::upper_bound(irho.begin(), irho.end(), rhoB)); + + // normalize + const T sumRG = T(3) * std::accumulate(omega.begin(), omega.begin() + indG, T(0)); + const T sumGB = T(3) * std::accumulate(omega.begin() + indG, omega.begin() + indB, T(0)); + const T sumBR = T(3) * std::accumulate(omega.begin() + indB, omega.end(), T(0)); + + std::for_each(omega.begin(), omega.begin() + indG, [sumRG](T& i) { i /= sumRG; }); + std::for_each(omega.begin() + indG, omega.begin() + indB, [sumGB](T& i) { i /= sumGB; }); + std::for_each(omega.begin() + indB, omega.end(), [sumBR](T& i) { i /= sumBR; }); + + // integrate + std::partial_sum(omega.begin(), omega.end(), omega.begin()); + } + fundToHemi(n, theta, rho, center, normals, rx, ry, irho, omega); +} + +// convert a unit direction in the cubic fundamental sector to fractional (0-1) polar coordinates on the northern hemisphere +template +void cubicToHemi(T const* const n, T& theta, T& rho) +{ + // analytic forms exist for these but are pretty ugly + static const T center[3] = {T(0.47862549063280972775795557014085), T(0.21513724867401406276755961370160), T(0.85125413593678216086647016667920)}; + static const T rx[3] = {T(-0.77642514034632512230434735649784), T(-0.34899513662466263468169382471815), T(0.52475365272718435652736178596868)}; + static const T ry[3] = {T(0.40997761055293190765064079176041), T(-0.91209558646301347822616475798505), T(0.00000000000000000000000000000000)}; + static const T normals[3][3] = { + {T(0), T(1), T(0)}, // bottom boundary + {-T(1) / std::sqrt(T(2)), T(0), T(1) / std::sqrt(T(2))}, // right boundary + {T(1) / std::sqrt(T(2)), -T(1) / std::sqrt(T(2)), T(0)} // top boundary + }; + + // build lookup table for nonlinear hue adjustment + static std::vector irho, omega; + if(omega.empty()) + { + // create evenly spaced list for angle from 0->1 + omega.resize(1000); + irho.resize(omega.size()); + std::iota(irho.begin(), irho.end(), T(0)); + std::for_each(irho.begin(), irho.end(), [](T& i) { i /= T(irho.size() - 1); }); + + // compute distance to edge at each engle + const T rhoG = T(0.33762324015537352214801096852002); + const T rhoB = T(0.61081504295610182824357048263158); + for(size_t i = 0; i < omega.size() - 1; i++) + { + // create vector normal to center at angle irho[i] + T n[3]; + T s = std::sin(Constants::pi2 * irho[i]); + T c = std::cos(Constants::pi2 * irho[i]); + std::transform(rx, rx + 3, ry, n, [s, c](T i, T j) { return i * s - j * c; }); + + if(irho[i] < rhoG) + { // bottom is closest edge + T mag = std::hypot(n[2], n[0]); + omega[i + 1] = std::acos((center[0] * n[2] - center[2] * n[0]) / mag); + } + else if(irho[i] < rhoB) + { // right is cosest edge) + T mag = std::hypot(n[1], (n[0] + n[2]) / Constants::r2) * Constants::r2; + omega[i + 1] = std::acos(-((center[0] + center[2]) * n[1] - center[1] * (n[0] + n[2])) / mag); + } + else + { // left is closest edge + T mag = std::hypot(n[2], (n[1] + n[0]) / Constants::r2) * Constants::r2; + omega[i + 1] = std::acos(-((center[1] + center[0]) * n[2] - center[2] * (n[1] + n[0])) / mag); + } + } + + // get offset to green and blue points + const size_t indG = std::distance(irho.begin(), std::upper_bound(irho.begin(), irho.end(), rhoG)); + const size_t indB = std::distance(irho.begin(), std::upper_bound(irho.begin(), irho.end(), rhoB)); + + // normalize + const T sumRG = T(3) * std::accumulate(omega.begin(), omega.begin() + indG, T(0)); + const T sumGB = T(3) * std::accumulate(omega.begin() + indG, omega.begin() + indB, T(0)); + const T sumBR = T(3) * std::accumulate(omega.begin() + indB, omega.end(), T(0)); + + std::for_each(omega.begin(), omega.begin() + indG, [sumRG](T& i) { i /= sumRG; }); + std::for_each(omega.begin() + indG, omega.begin() + indB, [sumGB](T& i) { i /= sumGB; }); + std::for_each(omega.begin() + indB, omega.end(), [sumBR](T& i) { i /= sumBR; }); + + // integrate + std::partial_sum(omega.begin(), omega.end(), omega.begin()); + } + fundToHemi(n, theta, rho, center, normals, rx, ry, irho, omega); +} + +// convert fractional (0-1) polar coordinates on the northern hemisphere to fractional rgb +template +void hemiToRgb(T theta, const T rho, T* const rgb, bool whiteCenter = true) +{ + const T p = whiteCenter ? T(1) - theta / T(2) : theta / T(2); + const T yL = whiteCenter ? T(0.25) : T(0.5); + const T yS = whiteCenter ? T(0.2) : T(0.5); + + // constants for nonlinear hue adjustment + static const T denom = T(1) + std::sqrt(T(2) * Constants::pi) * std::erf(T(5) * std::sqrt(T(2)) / T(3)) * T(3) / T(10); + static const T k1 = std::sqrt(Constants::pi / T(2)) / T(10); + static const T k2 = T(10) * std::sqrt(T(2)); + static const T k1_3 = T(1) / T(3); + static const T k1_6 = T(1) / T(6); + + // adjust hue gradient + T hsl[3]; + const T h3 = std::fmod(rho, k1_3); + const bool half = h3 > k1_6; + const T h6 = half ? k1_3 - h3 : h3; + const T hNew = (h6 + k1 * std::erf(k2 * h6)) / denom; + hsl[0] = rho - h3 + (half ? k1_3 - hNew : hNew); + + // adjust lightness gradient + const T sP = std::sin(p * Constants::pi / T(2)); + const T th = yL * p + (T(1) - yL) * sP * sP; + const T gray = T(1) - T(2) * yS * std::fabs(th - T(0.5)); + hsl[2] = (th - T(0.5)) * gray + T(0.5); + + // adjust saturation gradient + hsl[1] = gray * (T(1) - std::fabs(T(2) * th - T(1))) / (T(1) - std::fabs(T(2) * hsl[2] - T(1))); + if(std::isnan(hsl[1])) + hsl[1] = T(0); + + // convert to rgb + hsl2rgb(hsl, rgb); +} + +} // namespace ipf + +//-1 +template +void hemiIpf(T const* const n, T* const rgb) +{ + // convert to fractional spherical coordinates + T theta, phi; + ipf::unitCartesianToSpherical(n, theta, phi); + theta /= ipf::Constants::pi2; + phi /= ipf::Constants::pi; + + // move to northern hemisphere + bool whiteCenter = true; + if(phi > T(1) / T(2)) + { + phi = T(1) - phi; + whiteCenter = false; + } + phi *= T(2); + + // convert to rgb + ipf::hemiToRgb(phi, theta, rgb, whiteCenter); +} + +// 222, -3, 422, or 622 +template +void cyclicIpf(T const* const n, T* const rgb) +{ + T nFs[3], theta, rho; + bool whiteCenter = ipf::cyclicTriangle(n, nFs); // move to fundamental sector + ipf::dihedralToHemi(nFs, theta, rho); // stretch to northern hemisphere + ipf::hemiToRgb(theta, rho, rgb, whiteCenter); // convert to rgb +} + +// mmm, -3m, 4/mmm, or 6/mmm +template +void dihedralIpf(T const* const n, T* const rgb) +{ + T nFs[3], theta, rho; + bool whiteCenter = true; + if(3 == N) + { // handle -3m + whiteCenter = ipf::cyclicTriangle(n, nFs); // check if white/black center + ipf::dihedralTriangle(n, nFs); // move to fundamental sector + ipf::dihedralToHemi(nFs, theta, rho); // stretch to northern hemisphere + } + else + { + ipf::dihedralTriangle(n, nFs); // move to fundamental sector + ipf::dihedralToHemi(nFs, theta, rho); // stretch to northern hemisphere + } + ipf::hemiToRgb(theta, rho, rgb, whiteCenter); // convert to rgb +} + +// m-3 +template +void cubicLowIpf(T const* const n, T* const rgb) +{ + T nFs[3], theta, rho; + bool whiteCenter = ipf::cubicLowTriangle(n, nFs); // move to fundamental sector + ipf::cubicToHemi(nFs, theta, rho); // stretch to northern hemisphere + ipf::hemiToRgb(theta, rho, rgb, whiteCenter); // convert to rgb +} + +// m-3m +template +void cubicIpf(T const* const n, T* const rgb) +{ + T nFs[3], theta, rho; + ipf::cubicTriangle(n, nFs); // move to fundamental sector + ipf::cubicToHemi(nFs, theta, rho); // stretch to northern hemisphere + ipf::hemiToRgb(theta, rho, rgb); // convert to rgb +} +} // namespace coloring + +#endif //_coloring_h_ \ No newline at end of file diff --git a/Source/Test/AngleFileLoaderTest.cpp b/Source/Test/AngleFileLoaderTest.cpp index 3bc5741b..a70b1472 100644 --- a/Source/Test/AngleFileLoaderTest.cpp +++ b/Source/Test/AngleFileLoaderTest.cpp @@ -34,6 +34,13 @@ * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ #include +#include "EbsdLib/EbsdLib.h" +#include "EbsdLib/IO/AngleFileLoader.h" + +#include "UnitTestSupport.hpp" + +#include "EbsdLib/Test/EbsdLibTestFileLocations.h" + #include #include @@ -42,18 +49,12 @@ #include -#include "EbsdLib/EbsdLib.h" -#include "EbsdLib/IO/AngleFileLoader.h" - -#include "UnitTestSupport.hpp" - -#include "EbsdLib/Test/EbsdLibTestFileLocations.h" - using namespace ebsdlib; // ----------------------------------------------------------------------------- void makeTestFile(const std::string delim, const std::string& outputFile) { + EnsureParentDirectoryExists(outputFile); int count = 1000; float e0, e1, e2; diff --git a/Source/Test/CMakeLists.txt b/Source/Test/CMakeLists.txt index c0754d12..824b7fe3 100644 --- a/Source/Test/CMakeLists.txt +++ b/Source/Test/CMakeLists.txt @@ -49,11 +49,23 @@ set(EbsdLib_UnitTest_SRCS ${EbsdLibProj_SOURCE_DIR}/Source/Test/ModifiedLambertProjectionArrayTest.cpp ${EbsdLibProj_SOURCE_DIR}/Source/Test/PoleFigureUtilitiesTest.cpp ${EbsdLibProj_SOURCE_DIR}/Source/Test/PoleFigureCompositorTest.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/Test/PoleFigureLaueComparisonTest.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/Test/PoleFigurePositionTest.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/Test/RenderEbsdSmokeTest.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/Test/ImageCropTest.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/Apps/render_ebsd.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/Test/InversePoleFigureTest.cpp ${EbsdLibProj_SOURCE_DIR}/Source/Test/TiffWriterTest.cpp - ${EbsdLibProj_SOURCE_DIR}/Source/Test/DirectionalStatsTest.cpp ${EbsdLibProj_SOURCE_DIR}/Source/Test/UnitTestCommon.cpp ${EbsdLibProj_SOURCE_DIR}/Source/Test/UnitTestCommon.hpp + ${EbsdLibProj_SOURCE_DIR}/Source/Test/ColorSpaceUtilsTest.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/Test/FundamentalSectorGeometryTest.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/Test/TSLColorKeyTest.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/Test/NolzeHielscherColorKeyTest.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/Test/GriddedColorKeyTest.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/Test/PUCMColorKeyTest.cpp + ${EbsdLibProj_SOURCE_DIR}/Source/Test/ColorKeyKindTest.cpp ) @@ -79,7 +91,7 @@ if(EBSDLIB_DOWNLOAD_TEST_FILES) endif() ebsdlib_download_test_data(EBSDLIB_DATA_DIR ${EBSDLIB_DATA_DIR} ARCHIVE_NAME Laue_Orientation_Clusters_v6.tar.gz SHA512 f327d3d2a86d539b3c1f3fc755d8f5741d8eb68aab45fc1ab54d9e5db48643903f9a37898366203e6eb2e7585ce57c6e186cca2107acb1a53318b813345cb10a) - ebsdlib_download_test_data(EBSDLIB_DATA_DIR ${EBSDLIB_DATA_DIR} ARCHIVE_NAME Pole_Figure_Images.tar.gz SHA512 fe395dbc05c5408e806b6271873a21a9cef343c940126fed682233b21a793d6e62b3d33a4ac2a77bf5789c514187a595798e823f1f1fd7f71360fdea6e6500e8) + ebsdlib_download_test_data(EBSDLIB_DATA_DIR ${EBSDLIB_DATA_DIR} ARCHIVE_NAME Pole_Figure_Images_v2.tar.gz SHA512 f272af212fa634d702129721de4b5bbb62a89a0cf872f4230df3ad809cf5c7c6c075847d93efe9c1866c2a832893602b9486937679bb0a1d5987df26f9766799) endif() @@ -103,6 +115,7 @@ target_link_libraries(${UNIT_TEST_TARGET} target_include_directories(${UNIT_TEST_TARGET} PRIVATE "${EbsdLibProj_SOURCE_DIR}/3rdParty/canvas_ity/src" + "${EbsdLibProj_SOURCE_DIR}/Source" ) diff --git a/Source/Test/ColorKeyKindTest.cpp b/Source/Test/ColorKeyKindTest.cpp new file mode 100644 index 00000000..77f01ff6 --- /dev/null +++ b/Source/Test/ColorKeyKindTest.cpp @@ -0,0 +1,132 @@ +#include + +#include "EbsdLib/Core/EbsdLibConstants.h" +#include "EbsdLib/LaueOps/LaueOps.h" +#include "EbsdLib/Utilities/ColorTable.h" + +#include +#include + +// --------------------------------------------------------------------------- +// These tests pin down the ColorKeyKind dispatch API on LaueOps. The contract: +// +// 1. ColorKeyKind { TSL, PUCM, NolzeHielscher } enum exists in `ebsdlib::`. +// 2. generateIPFColor's default kind is TSL — the no-kind overload and an +// explicit ColorKeyKind::TSL call agree exactly. +// 3. PUCM and NolzeHielscher kinds change the per-pixel output (proves the +// kind argument actually routes through different color keys, not just +// compiled-out-and-ignored). +// 4. All 11 Laue classes accept all 3 kinds without throwing — each subclass +// owns a per-class PUCM/NH singleton matched to its point group / sector. +// --------------------------------------------------------------------------- + +namespace +{ +struct ColorTriple +{ + int r; + int g; + int b; +}; + +ColorTriple unpack(ebsdlib::Rgb argb) +{ + return {ebsdlib::RgbColor::dRed(argb), ebsdlib::RgbColor::dGreen(argb), ebsdlib::RgbColor::dBlue(argb)}; +} + +bool sameColor(ebsdlib::Rgb a, ebsdlib::Rgb b) +{ + const auto ca = unpack(a); + const auto cb = unpack(b); + return ca.r == cb.r && ca.g == cb.g && ca.b == cb.b; +} +} // namespace + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::ColorKeyKind::EnumExists", "[EbsdLib][ColorKeyKind]") +{ + // Just an "it compiles" test: the enum must be present in ebsdlib:: with + // these three named values. + REQUIRE(static_cast(ebsdlib::ColorKeyKind::TSL) == 0); + REQUIRE(static_cast(ebsdlib::ColorKeyKind::PUCM) == 1); + REQUIRE(static_cast(ebsdlib::ColorKeyKind::NolzeHielscher) == 2); +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::ColorKeyKind::DefaultIsTSL", "[EbsdLib][ColorKeyKind]") +{ + // No-kind generateIPFColor must match an explicit ColorKeyKind::TSL call, + // for every Laue class. Captures the "default to TSL" requirement. + auto allOps = ebsdlib::LaueOps::GetAllOrientationOps(); + double eulers[3] = {0.5, 0.3, 0.2}; + double refDir[3] = {0.6, 0.3, 0.7}; + + for(size_t i = 0; i < allOps.size(); ++i) + { + const auto defaultColor = allOps[i]->generateIPFColor(eulers, refDir, false); + const auto explicitTsl = allOps[i]->generateIPFColor(eulers, refDir, false, ebsdlib::ColorKeyKind::TSL); + INFO("Laue index " << i); + REQUIRE(sameColor(defaultColor, explicitTsl)); + } +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::ColorKeyKind::PUCMDiffersFromTSL", "[EbsdLib][ColorKeyKind]") +{ + // PUCM and TSL color the SST differently for a generic off-corner direction. + // Identity orientation + tilted refDir is the simplest input that lands well + // inside the SST (not on a primary [001]/[011]/[111] axis where keys agree). + auto allOps = ebsdlib::LaueOps::GetAllOrientationOps(); + double eulers[3] = {0.0, 0.0, 0.0}; + double refDir[3] = {0.6, 0.3, 0.7}; + + for(size_t i = 0; i < allOps.size(); ++i) + { + const auto tslColor = allOps[i]->generateIPFColor(eulers, refDir, false, ebsdlib::ColorKeyKind::TSL); + const auto pucmColor = allOps[i]->generateIPFColor(eulers, refDir, false, ebsdlib::ColorKeyKind::PUCM); + INFO("Laue index " << i); + REQUIRE_FALSE(sameColor(tslColor, pucmColor)); + } +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::ColorKeyKind::NolzeHielscherDiffersFromTSL", "[EbsdLib][ColorKeyKind]") +{ + // NH differs from TSL for the same reason; each Laue class has its own + // FundamentalSectorGeometry baked into its NH singleton. + auto allOps = ebsdlib::LaueOps::GetAllOrientationOps(); + double eulers[3] = {0.0, 0.0, 0.0}; + double refDir[3] = {0.6, 0.3, 0.7}; + + for(size_t i = 0; i < allOps.size(); ++i) + { + const auto tslColor = allOps[i]->generateIPFColor(eulers, refDir, false, ebsdlib::ColorKeyKind::TSL); + const auto nhColor = allOps[i]->generateIPFColor(eulers, refDir, false, ebsdlib::ColorKeyKind::NolzeHielscher); + INFO("Laue index " << i); + REQUIRE_FALSE(sameColor(tslColor, nhColor)); + } +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::ColorKeyKind::LegendAcceptsKindAndGridded", "[EbsdLib][ColorKeyKind]") +{ + // generateIPFTriangleLegend must accept (conv, kind, gridded). All 11 Laue + // classes should produce a non-null image for each kind, both gridded and + // non-gridded, in the canonical XParallelAStar convention. + auto allOps = ebsdlib::LaueOps::GetAllOrientationOps(); + constexpr int k_ImageDim = 128; + + for(const auto& kind : {ebsdlib::ColorKeyKind::TSL, ebsdlib::ColorKeyKind::PUCM, ebsdlib::ColorKeyKind::NolzeHielscher}) + { + for(const bool gridded : {false, true}) + { + for(size_t i = 0; i < allOps.size(); ++i) + { + auto img = allOps[i]->generateIPFTriangleLegend(k_ImageDim, /*generateEntirePlane=*/false, ebsdlib::HexConvention::XParallelAStar, kind, gridded); + INFO("Laue index " << i << " kind=" << static_cast(kind) << " gridded=" << gridded); + REQUIRE(img != nullptr); + REQUIRE(img->size() > 0); + } + } + } +} diff --git a/Source/Test/ColorSpaceUtilsTest.cpp b/Source/Test/ColorSpaceUtilsTest.cpp new file mode 100644 index 00000000..c6a5839d --- /dev/null +++ b/Source/Test/ColorSpaceUtilsTest.cpp @@ -0,0 +1,89 @@ +#include + +#include "EbsdLib/Utilities/ColorSpaceUtils.hpp" + +TEST_CASE("ebsdlib::ColorSpaceUtils::HslToRgb", "[EbsdLib][ColorSpaceUtils]") +{ + SECTION("Pure Red") + { + auto [r, g, b] = ebsdlib::color::hslToRgb(0.0, 1.0, 0.5); + REQUIRE(r == Approx(1.0).margin(1e-6)); + REQUIRE(g == Approx(0.0).margin(1e-6)); + REQUIRE(b == Approx(0.0).margin(1e-6)); + } + SECTION("Pure Green") + { + auto [r, g, b] = ebsdlib::color::hslToRgb(1.0 / 3.0, 1.0, 0.5); + REQUIRE(r == Approx(0.0).margin(1e-6)); + REQUIRE(g == Approx(1.0).margin(1e-6)); + REQUIRE(b == Approx(0.0).margin(1e-6)); + } + SECTION("Pure Blue") + { + auto [r, g, b] = ebsdlib::color::hslToRgb(2.0 / 3.0, 1.0, 0.5); + REQUIRE(r == Approx(0.0).margin(1e-6)); + REQUIRE(g == Approx(0.0).margin(1e-6)); + REQUIRE(b == Approx(1.0).margin(1e-6)); + } + SECTION("White") + { + auto [r, g, b] = ebsdlib::color::hslToRgb(0.0, 0.0, 1.0); + REQUIRE(r == Approx(1.0).margin(1e-6)); + REQUIRE(g == Approx(1.0).margin(1e-6)); + REQUIRE(b == Approx(1.0).margin(1e-6)); + } + SECTION("Black") + { + auto [r, g, b] = ebsdlib::color::hslToRgb(0.0, 0.0, 0.0); + REQUIRE(r == Approx(0.0).margin(1e-6)); + REQUIRE(g == Approx(0.0).margin(1e-6)); + REQUIRE(b == Approx(0.0).margin(1e-6)); + } + SECTION("50% Gray") + { + auto [r, g, b] = ebsdlib::color::hslToRgb(0.0, 0.0, 0.5); + REQUIRE(r == Approx(0.5).margin(1e-6)); + REQUIRE(g == Approx(0.5).margin(1e-6)); + REQUIRE(b == Approx(0.5).margin(1e-6)); + } + SECTION("Yellow (H=60deg)") + { + auto [r, g, b] = ebsdlib::color::hslToRgb(1.0 / 6.0, 1.0, 0.5); + REQUIRE(r == Approx(1.0).margin(1e-6)); + REQUIRE(g == Approx(1.0).margin(1e-6)); + REQUIRE(b == Approx(0.0).margin(1e-6)); + } +} + +TEST_CASE("ebsdlib::ColorSpaceUtils::HslToHsv", "[EbsdLib][ColorSpaceUtils]") +{ + SECTION("Full saturation, mid lightness -> V=1, S=1") + { + auto [h, s, v] = ebsdlib::color::hslToHsv(0.0, 1.0, 0.5); + REQUIRE(h == Approx(0.0)); + REQUIRE(s == Approx(1.0)); + REQUIRE(v == Approx(1.0)); + } + SECTION("Zero saturation -> S_hsv = 0") + { + auto [h, s, v] = ebsdlib::color::hslToHsv(0.5, 0.0, 0.5); + REQUIRE(s == Approx(0.0)); + REQUIRE(v == Approx(0.5)); + } +} + +TEST_CASE("ebsdlib::ColorSpaceUtils::RoundTrip", "[EbsdLib][ColorSpaceUtils]") +{ + for(double hue = 0.0; hue < 1.0; hue += 0.1) + { + auto [r, g, b] = ebsdlib::color::hslToRgb(hue, 1.0, 0.5); + REQUIRE(r >= 0.0); + REQUIRE(r <= 1.0); + REQUIRE(g >= 0.0); + REQUIRE(g <= 1.0); + REQUIRE(b >= 0.0); + REQUIRE(b <= 1.0); + double maxVal = std::max({r, g, b}); + REQUIRE(maxVal == Approx(1.0).margin(1e-6)); + } +} diff --git a/Source/Test/FundamentalSectorGeometryTest.cpp b/Source/Test/FundamentalSectorGeometryTest.cpp new file mode 100644 index 00000000..3767e1c2 --- /dev/null +++ b/Source/Test/FundamentalSectorGeometryTest.cpp @@ -0,0 +1,291 @@ +#include + +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" + +#include + +using Vec3 = std::array; + +static Vec3 normalize(Vec3 v) +{ + double len = std::sqrt(v[0] * v[0] + v[1] * v[1] + v[2] * v[2]); + return {v[0] / len, v[1] / len, v[2] / len}; +} + +TEST_CASE("ebsdlib::FundamentalSectorGeometry::CubicHighVertices", "[EbsdLib][FundamentalSector]") +{ + auto sector = ebsdlib::FundamentalSectorGeometry::cubicHigh(); + + SECTION("Has 3 vertices") + { + REQUIRE(sector.vertices().size() == 3); + } + + SECTION("Vertices are [001], [101], [111]") + { + auto verts = sector.vertices(); + // [001] = {0, 0, 1} + REQUIRE(verts[0][2] == Approx(1.0).margin(1e-6)); + // [101] = {s2, 0, s2} + REQUIRE(verts[1][0] == Approx(1.0 / std::sqrt(2.0)).margin(1e-6)); + REQUIRE(verts[1][2] == Approx(1.0 / std::sqrt(2.0)).margin(1e-6)); + // [111] = {s3, s3, s3} + REQUIRE(verts[2][0] == Approx(1.0 / std::sqrt(3.0)).margin(1e-6)); + } + + SECTION("Barycenter is normalized mean of vertices") + { + auto center = sector.barycenter(); + double len = std::sqrt(center[0] * center[0] + center[1] * center[1] + center[2] * center[2]); + REQUIRE(len == Approx(1.0).margin(1e-6)); + } +} + +TEST_CASE("ebsdlib::FundamentalSectorGeometry::PolarCoordinates", "[EbsdLib][FundamentalSector]") +{ + auto sector = ebsdlib::FundamentalSectorGeometry::cubicHigh(); + + SECTION("At barycenter: radius = 1 (center of sector)") + { + auto center = sector.barycenter(); + auto [radius, rho] = sector.polarCoordinates(center); + // Convention: radius=1 at center, 0 at boundary (orix/MTEX convention) + REQUIRE(radius == Approx(1.0).margin(1e-4)); + } + + SECTION("At vertex [001]: radius near 0 (on boundary)") + { + Vec3 v001 = {0.0, 0.0, 1.0}; + auto [radius, rho] = sector.polarCoordinates(v001); + REQUIRE(radius == Approx(0.0).margin(0.05)); + } + + SECTION("At vertex [101]: radius near 0 (on boundary)") + { + Vec3 v101 = normalize({1.0, 0.0, 1.0}); + auto [radius, rho] = sector.polarCoordinates(v101); + REQUIRE(radius == Approx(0.0).margin(0.05)); + } + + SECTION("At vertex [111]: radius near 0 (on boundary)") + { + Vec3 v111 = normalize({1.0, 1.0, 1.0}); + auto [radius, rho] = sector.polarCoordinates(v111); + REQUIRE(radius == Approx(0.0).margin(0.05)); + } + + SECTION("Radius is in [0, 1] for interior point") + { + // Use a point well inside the cubic high SST: eta ~ 20deg, chi ~ 20deg + Vec3 interior = normalize({0.3, 0.1, 1.0}); + auto [radius, rho] = sector.polarCoordinates(interior); + REQUIRE(radius >= 0.0); + REQUIRE(radius <= 1.0); + } + + SECTION("Rho is in [0, 2*pi)") + { + Vec3 interior = normalize({0.3, 0.1, 1.0}); + auto [radius, rho] = sector.polarCoordinates(interior); + REQUIRE(rho >= 0.0); + REQUIRE(rho < 2.0 * M_PI); + } +} + +TEST_CASE("ebsdlib::FundamentalSectorGeometry::EdgeCases", "[EbsdLib][FundamentalSector]") +{ + auto sector = ebsdlib::FundamentalSectorGeometry::cubicHigh(); + + SECTION("Direction exactly at barycenter returns radius = 1 (center)") + { + auto center = sector.barycenter(); + auto [radius, rho] = sector.polarCoordinates(center); + REQUIRE(radius == Approx(1.0).margin(1e-6)); + } + + SECTION("isInside returns true for interior, false for exterior") + { + REQUIRE(sector.isInside({0.0, 0.0, 1.0})); + // Interior point: eta ~ 18deg < 45deg, small chi + REQUIRE(sector.isInside(normalize({0.3, 0.1, 1.0}))); + // [100] is outside (violates hypotenuse boundary) + REQUIRE_FALSE(sector.isInside({1.0, 0.0, 0.0})); + } +} + +TEST_CASE("ebsdlib::FundamentalSectorGeometry::NonTriangularSectors", "[EbsdLib][FundamentalSector]") +{ + SECTION("Cubic low (m-3) has 4 vertices") + { + auto sector = ebsdlib::FundamentalSectorGeometry::cubicLow(); + REQUIRE(sector.vertices().size() == 4); + REQUIRE(sector.colorKeyMode() == "extended"); + } + + SECTION("Triclinic (-1) has 0 vertices and covers upper hemisphere") + { + auto sector = ebsdlib::FundamentalSectorGeometry::triclinic(); + REQUIRE(sector.vertices().empty()); + REQUIRE(sector.colorKeyMode() == "impossible"); + REQUIRE(sector.isInside({0.0, 0.0, 1.0})); + REQUIRE(sector.isInside(normalize({0.5, 0.5, 0.1}))); + } + + SECTION("Monoclinic (2/m) is extended") + { + auto sector = ebsdlib::FundamentalSectorGeometry::monoclinic(); + REQUIRE(sector.colorKeyMode() == "extended"); + } +} + +TEST_CASE("ebsdlib::FundamentalSectorGeometry::AllLaueGroups", "[EbsdLib][FundamentalSector]") +{ + std::vector sectors = { + ebsdlib::FundamentalSectorGeometry::cubicHigh(), ebsdlib::FundamentalSectorGeometry::cubicLow(), ebsdlib::FundamentalSectorGeometry::hexagonalHigh(), + ebsdlib::FundamentalSectorGeometry::hexagonalLow(), ebsdlib::FundamentalSectorGeometry::tetragonalHigh(), ebsdlib::FundamentalSectorGeometry::tetragonalLow(), + ebsdlib::FundamentalSectorGeometry::trigonalHigh(), ebsdlib::FundamentalSectorGeometry::trigonalLow(), ebsdlib::FundamentalSectorGeometry::orthorhombic(), + ebsdlib::FundamentalSectorGeometry::monoclinic(), ebsdlib::FundamentalSectorGeometry::triclinic(), + }; + + for(size_t i = 0; i < sectors.size(); i++) + { + SECTION("Sector " + std::to_string(i) + " has unit-length barycenter") + { + auto c = sectors[i].barycenter(); + double len = std::sqrt(c[0] * c[0] + c[1] * c[1] + c[2] * c[2]); + REQUIRE(len == Approx(1.0).margin(1e-6)); + } + } +} + +TEST_CASE("ebsdlib::FundamentalSectorGeometry::CorrectAzimuthalAngle", "[EbsdLib][FundamentalSector]") +{ + auto sector = ebsdlib::FundamentalSectorGeometry::cubicHigh(); + + SECTION("Correction produces monotonically increasing output") + { + // The corrected angle should increase monotonically with input angle + double prev = 0.0; + for(double rho = 0.01; rho < 2.0 * M_PI - 0.01; rho += 0.05) + { + double corrected = sector.correctAzimuthalAngle(rho); + REQUIRE(corrected >= prev - 0.01); // monotonic (with small tolerance) + prev = corrected; + } + } + + SECTION("Result is in [0, 2*pi)") + { + double corrected = sector.correctAzimuthalAngle(-0.5); + REQUIRE(corrected >= 0.0); + REQUIRE(corrected < 2.0 * M_PI + 0.01); + } +} + +TEST_CASE("ebsdlib::FundamentalSectorGeometry::IsInsideBoundaryPoints", "[EbsdLib][FundamentalSector]") +{ + SECTION("Cubic high: all vertices are inside or on boundary") + { + auto sector = ebsdlib::FundamentalSectorGeometry::cubicHigh(); + for(const auto& v : sector.vertices()) + { + REQUIRE(sector.isInside(v)); + } + } + + SECTION("Hexagonal high: all vertices are inside or on boundary") + { + auto sector = ebsdlib::FundamentalSectorGeometry::hexagonalHigh(); + for(const auto& v : sector.vertices()) + { + REQUIRE(sector.isInside(v)); + } + } + + SECTION("Tetragonal high: all vertices are inside or on boundary") + { + auto sector = ebsdlib::FundamentalSectorGeometry::tetragonalHigh(); + for(const auto& v : sector.vertices()) + { + REQUIRE(sector.isInside(v)); + } + } + + SECTION("Trigonal high: all vertices are inside or on boundary") + { + auto sector = ebsdlib::FundamentalSectorGeometry::trigonalHigh(); + for(const auto& v : sector.vertices()) + { + REQUIRE(sector.isInside(v)); + } + } + + SECTION("Orthorhombic: all vertices are inside or on boundary") + { + auto sector = ebsdlib::FundamentalSectorGeometry::orthorhombic(); + for(const auto& v : sector.vertices()) + { + REQUIRE(sector.isInside(v)); + } + } + + SECTION("Cubic low: all vertices are inside or on boundary") + { + auto sector = ebsdlib::FundamentalSectorGeometry::cubicLow(); + for(const auto& v : sector.vertices()) + { + REQUIRE(sector.isInside(v)); + } + } + + SECTION("Trigonal low: all vertices are inside or on boundary") + { + auto sector = ebsdlib::FundamentalSectorGeometry::trigonalLow(); + for(const auto& v : sector.vertices()) + { + REQUIRE(sector.isInside(v)); + } + } + + SECTION("Monoclinic: all vertices are inside or on boundary") + { + auto sector = ebsdlib::FundamentalSectorGeometry::monoclinic(); + for(const auto& v : sector.vertices()) + { + REQUIRE(sector.isInside(v)); + } + } +} + +TEST_CASE("ebsdlib::FundamentalSectorGeometry::BarycenterIsInside", "[EbsdLib][FundamentalSector]") +{ + SECTION("Cubic high barycenter is inside") + { + auto sector = ebsdlib::FundamentalSectorGeometry::cubicHigh(); + REQUIRE(sector.isInside(sector.barycenter())); + } + + SECTION("Hexagonal high barycenter is inside") + { + auto sector = ebsdlib::FundamentalSectorGeometry::hexagonalHigh(); + REQUIRE(sector.isInside(sector.barycenter())); + } + + SECTION("Cubic low barycenter is inside") + { + auto sector = ebsdlib::FundamentalSectorGeometry::cubicLow(); + REQUIRE(sector.isInside(sector.barycenter())); + } + + SECTION("Trigonal high barycenter is inside") + { + auto sector = ebsdlib::FundamentalSectorGeometry::trigonalHigh(); + REQUIRE(sector.isInside(sector.barycenter())); + } + + SECTION("Trigonal low barycenter is inside") + { + auto sector = ebsdlib::FundamentalSectorGeometry::trigonalLow(); + REQUIRE(sector.isInside(sector.barycenter())); + } +} diff --git a/Source/Test/GriddedColorKeyTest.cpp b/Source/Test/GriddedColorKeyTest.cpp new file mode 100644 index 00000000..1b2f437f --- /dev/null +++ b/Source/Test/GriddedColorKeyTest.cpp @@ -0,0 +1,272 @@ +#include + +#include "EbsdLib/LaueOps/CubicOps.h" +#include "EbsdLib/LaueOps/LaueOps.h" +#include "EbsdLib/Utilities/ColorTable.h" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" +#include "EbsdLib/Utilities/GriddedColorKey.hpp" +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/TSLColorKey.hpp" + +#include + +#ifndef M_PI +#define M_PI 3.14159265358979323846 +#endif + +TEST_CASE("ebsdlib::GriddedColorKey::BasicProperties", "[EbsdLib][GriddedColorKey]") +{ + auto tslKey = std::make_shared(); + auto gridKey = std::make_shared(tslKey, 2.0); + + SECTION("Name includes gridded suffix") + { + REQUIRE(gridKey->name() == "TSL (gridded)"); + } + + SECTION("Inner key is accessible") + { + REQUIRE(gridKey->innerKey()->name() == "TSL"); + } + + SECTION("Resolution is stored correctly") + { + REQUIRE(gridKey->resolutionDeg() == Approx(2.0)); + } +} + +TEST_CASE("ebsdlib::GriddedColorKey::FlatShading", "[EbsdLib][GriddedColorKey]") +{ + auto nhKey = std::make_shared(ebsdlib::FundamentalSectorGeometry::cubicHigh()); + auto gridKey = std::make_shared(nhKey, 2.0); // coarse 2-degree grid + + SECTION("Nearby points within same grid cell produce identical colors") + { + // Two points that are less than 2 degrees apart should snap to the same grid cell + double eta1 = 0.2; + double chi1 = 0.3; + double eta2 = 0.2 + 0.01; // ~0.6 degrees apart + double chi2 = 0.3 + 0.01; + + std::array limits = {0.0, M_PI / 4.0, 0.6}; + auto c1 = gridKey->direction2Color(eta1, chi1, limits); + auto c2 = gridKey->direction2Color(eta2, chi2, limits); + + // Should be exactly equal (same grid cell) + REQUIRE(c1[0] == Approx(c2[0]).margin(1e-10)); + REQUIRE(c1[1] == Approx(c2[1]).margin(1e-10)); + REQUIRE(c1[2] == Approx(c2[2]).margin(1e-10)); + } + + SECTION("Points in different grid cells may produce different colors") + { + double eta1 = 0.2; + double eta2 = 0.2 + 0.05; // ~2.9 degrees apart, different cell + + std::array limits = {0.0, M_PI / 4.0, 0.6}; + auto c1 = gridKey->direction2Color(eta1, 0.3, limits); + auto c2 = gridKey->direction2Color(eta2, 0.3, limits); + + // These may or may not differ depending on the color function + // Just verify they are valid + REQUIRE(c1[0] >= 0.0); + REQUIRE(c1[0] <= 1.0); + REQUIRE(c2[0] >= 0.0); + REQUIRE(c2[0] <= 1.0); + } + + SECTION("All outputs are valid RGB") + { + for(double eta = 0.01; eta < M_PI / 4.0 - 0.01; eta += 0.05) + { + double chiMax = std::acos(std::sqrt(1.0 / (2.0 + std::tan(eta) * std::tan(eta)))); + for(double chi = 0.01; chi < chiMax - 0.01; chi += 0.05) + { + std::array limits = {0.0, M_PI / 4.0, chiMax}; + auto [r, g, b] = gridKey->direction2Color(eta, chi, limits); + REQUIRE(r >= 0.0); + REQUIRE(r <= 1.0); + REQUIRE(g >= 0.0); + REQUIRE(g <= 1.0); + REQUIRE(b >= 0.0); + REQUIRE(b <= 1.0); + } + } + } +} + +TEST_CASE("ebsdlib::GriddedColorKey::LaueOpsLegendIntegration", "[EbsdLib][GriddedColorKey]") +{ + auto allOps = ebsdlib::LaueOps::GetAllOrientationOps(); + auto& cubicOps = *allOps[1]; // Cubic_High + + SECTION("generateIPFTriangleLegend(gridded=true) returns a valid image") + { + auto legend = cubicOps.generateIPFTriangleLegend(64, false, ebsdlib::HexConvention::NotApplicable, ebsdlib::ColorKeyKind::NolzeHielscher, /*gridded=*/true); + REQUIRE(legend != nullptr); + REQUIRE(legend->getNumberOfTuples() > 0); + } + + SECTION("Gridded vs non-gridded legends both render for each kind") + { + for(const auto kind : {ebsdlib::ColorKeyKind::TSL, ebsdlib::ColorKeyKind::PUCM, ebsdlib::ColorKeyKind::NolzeHielscher}) + { + auto perPixel = cubicOps.generateIPFTriangleLegend(64, false, ebsdlib::HexConvention::NotApplicable, kind, /*gridded=*/false); + auto gridded = cubicOps.generateIPFTriangleLegend(64, false, ebsdlib::HexConvention::NotApplicable, kind, /*gridded=*/true); + REQUIRE(perPixel != nullptr); + REQUIRE(gridded != nullptr); + } + } +} + +// ----------------------------------------------------------------------------- +// Regression test for the angleLimits-discard bug. The 3-argument overload +// of GriddedColorKey::direction2Color must honor the caller's angleLimits; +// it cannot just look up colors from a precomputed grid that was baked using +// the inner key's default (cubic) angle limits. +// +// Test: at (eta=15°, chi=45°) with hexagonal-high angle limits +// (etaMin=0, etaMax=30°, chiMax=90°), the gridded TSL key's color must equal +// the per-pixel TSL key's color at the same SNAPPED (eta, chi). Previously +// the gridded key was returning colors computed under cubic m-3m limits +// (etaMax=45°, chiMax=35.26°) for every Laue class, producing wrong-colored +// IPF legends across the board. +TEST_CASE("ebsdlib::GriddedColorKey::HonorsAngleLimitsIn3ArgOverload", "[EbsdLib][GriddedColorKey]") +{ + auto tslKey = std::make_shared(); + auto gridKey = std::make_shared(tslKey, 1.0); + + // Hexagonal-high IPF SST limits, in radians. + const std::array hexLimits = {0.0, M_PI / 6.0, M_PI / 2.0}; + // Cubic-m3m IPF SST limits — what the gridded key currently bakes into its + // grid via TSLColorKey's default angle limits. + const std::array cubicLimits = {0.0, M_PI / 4.0, std::acos(1.0 / std::sqrt(3.0))}; + + // (eta, chi) chosen so the cubic and hexagonal formulas give clearly + // different colors: chi=45° is much more than the cubic chiMax (~35.26°) + // so the cubic formula clamps red to 0, while the hex formula gives red>0.5. + const double eta = 15.0 * M_PI / 180.0; + const double chi = 45.0 * M_PI / 180.0; + + auto gridded = gridKey->direction2Color(eta, chi, hexLimits); + auto perPixelHex = tslKey->direction2Color(eta, chi, hexLimits); + auto perPixelCubic = tslKey->direction2Color(eta, chi, cubicLimits); + + INFO("gridded RGB (under hex limits) = (" << gridded[0] << ", " << gridded[1] << ", " << gridded[2] << ")"); + INFO("per-pixel TSL RGB under hex limits = (" << perPixelHex[0] << ", " << perPixelHex[1] << ", " << perPixelHex[2] << ")"); + INFO("per-pixel TSL RGB under cubic limits = (" << perPixelCubic[0] << ", " << perPixelCubic[1] << ", " << perPixelCubic[2] << ")"); + + // The two limit sets must produce visibly different colors (otherwise the + // test wouldn't actually catch the bug). Verify that as a precondition. + REQUIRE(std::abs(perPixelHex[0] - perPixelCubic[0]) > 0.05); + + // The gridded color under hex limits should equal the per-pixel TSL color + // under hex limits (modulo grid snapping; with 1° grid and exact-degree + // input the snap is essentially identity). + CHECK(gridded[0] == Approx(perPixelHex[0]).margin(0.01)); + CHECK(gridded[1] == Approx(perPixelHex[1]).margin(0.01)); + CHECK(gridded[2] == Approx(perPixelHex[2]).margin(0.01)); +} + +// ----------------------------------------------------------------------------- +// Regression test: GriddedColorKey must pass eta to the inner key +// unmodified, even when eta is negative. Trigonal-low (-3) and trigonal-high +// (-3m) have negative etaMin (-120° and -90° respectively), and the inner +// TSL formula uses |eta - etaMin| which already handles negative eta +// correctly. A pre-snap "wrap to [0, 2π]" step in the grid lookup will +// destroy that math by remapping eta=-60° to +300°. +TEST_CASE("ebsdlib::GriddedColorKey::HandlesNegativeEta", "[EbsdLib][GriddedColorKey]") +{ + auto tslKey = std::make_shared(); + auto gridKey = std::make_shared(tslKey, 1.0); + + // Trigonal-3m angle limits in radians. + const std::array trigLimits = {-M_PI / 2.0, -M_PI / 6.0, M_PI / 2.0}; + + // Pick eta = -60° which lies between etaMin=-90° and etaMax=-30°. + const double eta = -60.0 * M_PI / 180.0; + const double chi = 45.0 * M_PI / 180.0; + + auto gridded = gridKey->direction2Color(eta, chi, trigLimits); + auto perPixel = tslKey->direction2Color(eta, chi, trigLimits); + + INFO("gridded = (" << gridded[0] << ", " << gridded[1] << ", " << gridded[2] << ")"); + INFO("per-pixel = (" << perPixel[0] << ", " << perPixel[1] << ", " << perPixel[2] << ")"); + + CHECK(gridded[0] == Approx(perPixel[0]).margin(0.01)); + CHECK(gridded[1] == Approx(perPixel[1]).margin(0.01)); + CHECK(gridded[2] == Approx(perPixel[2]).margin(0.01)); +} + +// ----------------------------------------------------------------------------- +// Regression test for boundary pixels of the cubic-m3m IPF triangle. The +// curved [011]->[111] edge has chiMax that varies with eta. The legend +// renderer passes angleLimits computed at the *original* (pre-snap) eta, but +// GriddedColorKey snaps eta and chi to grid cells before computing the color. +// For a pixel just inside the boundary, the snap can push chi to be equal-to +// or just past angleLimits[2], producing NaN in the TSL formula +// (1 - chi/chiMax → negative → sqrt). The result is a stippled gray/dark line +// along the curved edge of the cubic IPF legend. +// +// Expected behavior: gridded value should be a valid (non-NaN, R/G/B in [0,1]) +// color whose red channel is clamped to 0 rather than going NaN. +TEST_CASE("ebsdlib::GriddedColorKey::BoundarySnapDoesNotProduceNaN", "[EbsdLib][GriddedColorKey]") +{ + auto tslKey = std::make_shared(); + auto gridKey = std::make_shared(tslKey, 1.0); + + // Cubic m-3m at eta=22.5° has chiMax ≈ 47.27°. Pick a pixel JUST inside. + const double eta = 22.5 * M_PI / 180.0; + const double chiMax = std::acos(std::sqrt(1.0 / (2.0 + std::tan(eta) * std::tan(eta)))); + const double chi = chiMax - 0.05 * M_PI / 180.0; // 0.05° inside the boundary + const std::array angleLimits = {0.0, M_PI / 4.0, chiMax}; + + auto gridded = gridKey->direction2Color(eta, chi, angleLimits); + + INFO("gridded boundary pixel = (" << gridded[0] << ", " << gridded[1] << ", " << gridded[2] << ")"); + CHECK(std::isfinite(gridded[0])); + CHECK(std::isfinite(gridded[1])); + CHECK(std::isfinite(gridded[2])); + CHECK(gridded[0] >= 0.0); + CHECK(gridded[0] <= 1.0); + CHECK(gridded[1] >= 0.0); + CHECK(gridded[1] <= 1.0); + CHECK(gridded[2] >= 0.0); + CHECK(gridded[2] <= 1.0); +} + +// ----------------------------------------------------------------------------- +// Regression test for triclinic IPF legend coloring. Triclinic (-1) has +// etaMin=0, etaMax=π — i.e. the upper bound is 180° and the legend renders +// the full stereographic disk. Pixels in the lower hemisphere of the disk +// have eta from atan2 in [-π, 0]; the TSL formula uses |eta - etaMin| = +// |eta| so negative eta colors the disk symmetrically about y=0. Clamping +// snappedEta to [angleLimits[0], angleLimits[1]] would collapse all of +// those pixels to a single eta value, ruining the lower-hemisphere colors. +TEST_CASE("ebsdlib::GriddedColorKey::TriclinicNegativeEtaProducesColor", "[EbsdLib][GriddedColorKey]") +{ + auto tslKey = std::make_shared(); + auto gridKey = std::make_shared(tslKey, 1.0); + + // Triclinic IPF angle limits. + const std::array tricLimits = {0.0, M_PI, M_PI / 2.0}; + + // A lower-hemisphere pixel at eta = -90°. Per-pixel TSL must render this + // with the same color as eta = +90° (because the formula uses |eta|). + const double eta = -90.0 * M_PI / 180.0; + const double chi = 30.0 * M_PI / 180.0; + + auto gridded = gridKey->direction2Color(eta, chi, tricLimits); + auto perPixelNeg = tslKey->direction2Color(eta, chi, tricLimits); + auto perPixelPos = tslKey->direction2Color(-eta, chi, tricLimits); + + // The per-pixel TSL formula is symmetric in |eta|. + REQUIRE(perPixelNeg[0] == Approx(perPixelPos[0]).margin(1e-9)); + REQUIRE(perPixelNeg[1] == Approx(perPixelPos[1]).margin(1e-9)); + REQUIRE(perPixelNeg[2] == Approx(perPixelPos[2]).margin(1e-9)); + + // The gridded TSL should match the per-pixel result (modulo grid snap). + CHECK(gridded[0] == Approx(perPixelNeg[0]).margin(0.01)); + CHECK(gridded[1] == Approx(perPixelNeg[1]).margin(0.01)); + CHECK(gridded[2] == Approx(perPixelNeg[2]).margin(0.01)); +} diff --git a/Source/Test/IPFLegendTest.cpp b/Source/Test/IPFLegendTest.cpp index 5fc9b492..3cd3718d 100644 --- a/Source/Test/IPFLegendTest.cpp +++ b/Source/Test/IPFLegendTest.cpp @@ -36,12 +36,22 @@ #include "EbsdLib/EbsdLib.h" #include "EbsdLib/LaueOps/CubicOps.h" -#include "EbsdLib/Utilities/TiffWriter.h" +#include "EbsdLib/Utilities/ColorTable.h" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" +#include "EbsdLib/Utilities/GriddedColorKey.hpp" +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/PUCMColorKey.hpp" +#include "EbsdLib/Utilities/PngWriter.h" +#include "EbsdLib/Utilities/TSLColorKey.hpp" #include "EbsdLib/Test/EbsdLibTestFileLocations.h" #include "UnitTestSupport.hpp" +#include + +#include #include +#include #define IMAGE_WIDTH 512 #define IMAGE_HEIGHT 512 @@ -52,17 +62,353 @@ using namespace ebsdlib; TEST_CASE("ebsdlib::IPFLegendTest", "[EbsdLib][IPFLegendTest]") { + + fs::path dir = fmt::format("{}/IPFLegendTest", ebsdlib::unit_test::k_TestTempDir); + if(fs::exists(dir) == false) + { + fs::create_directories(dir); + } + std::vector ops = LaueOps::GetAllOrientationOps(); for(size_t index = 0; index < 11; index++) { SECTION(ops[index]->getSymmetryName()) { - ebsdlib::UInt8ArrayType::Pointer image = ops[index]->generateIPFTriangleLegend(IMAGE_WIDTH, false); - std::stringstream outputFilePathStream; - outputFilePathStream << ebsdlib::unit_test::k_TestTempDir << "/" << ops[index]->getNameOfClass() << ".tiff"; - auto result = TiffWriter::WriteColorImage(outputFilePathStream.str(), IMAGE_WIDTH, IMAGE_WIDTH, 3, image->data()); + ebsdlib::UInt8ArrayType::Pointer image = ops[index]->generateIPFTriangleLegend(IMAGE_WIDTH, false, ebsdlib::HexConvention::XParallelAStar); + + std::string outputFilePath = fmt::format("{}/IPFLegendTest/{}.png", ebsdlib::unit_test::k_TestTempDir, ops[index]->getNameOfClass()); + EnsureParentDirectoryExists(outputFilePath); + auto result = PngWriter::WriteColorImage(outputFilePath, IMAGE_WIDTH, IMAGE_WIDTH, 3, image->data()); REQUIRE(result.first == 0); } } } + +TEST_CASE("ebsdlib::IPFLegendTest::NolzeHielscherLegend", "[EbsdLib][IPFLegendTest]") +{ + std::vector ops = LaueOps::GetAllOrientationOps(); + + for(size_t index = 0; index < 11; index++) + { + SECTION(ops[index]->getSymmetryName() + " NH Legend") + { + // Request the per-class NolzeHielscher legend (each LaueOps subclass owns + // its own NH singleton built from its FundamentalSectorGeometry). + auto legend = ops[index]->generateIPFTriangleLegend(64, false, ebsdlib::HexConvention::XParallelAStar, ebsdlib::ColorKeyKind::NolzeHielscher); + REQUIRE(legend != nullptr); + REQUIRE(legend->getNumberOfTuples() > 0); + + // Verify the image has some non-white pixels (NH key produces colors) + bool hasNonWhitePixel = false; + size_t numTuples = legend->getNumberOfTuples(); + for(size_t i = 0; i < numTuples; i++) + { + uint8_t* pixel = legend->getTuplePointer(i); + // Legend is RGB (3 components after alpha removal) + if(legend->getNumberOfComponents() == 3 || legend->getNumberOfComponents() == 4) + { + if(pixel[0] != 255 || pixel[1] != 255 || pixel[2] != 255) + { + hasNonWhitePixel = true; + break; + } + } + } + REQUIRE(hasNonWhitePixel); + } + } +} + +// ----------------------------------------------------------------------------- +// Corner probe: for every Laue class, the TSL IPF color at the crystal c-axis +// direction (sample refDir pointing along crystal [001]/[0001]) must be pure +// red. computeIPFColor maps chi=0 -> R=1, G=0, B=0; this test is therefore a +// convention sanity check that catches: +// - Euler-to-matrix sign flips (c-axis lands somewhere other than chi=0) +// - Inversion/symmetry bugs that move the vertex off the triangle corner +// - Color-key regressions in the TSL default +// It doesn't cover the interior of the triangle; for that, compare against +// the MTEX legends under Data/IPF_Legend/MTEX_Reference/. +TEST_CASE("ebsdlib::IPFLegendTest::CAxisIsRed", "[EbsdLib][IPFLegendTest]") +{ + std::vector ops = LaueOps::GetAllOrientationOps(); + std::set seen; + + double identityEuler[3] = {0.0, 0.0, 0.0}; + double cAxisSampleDir[3] = {0.0, 0.0, 1.0}; + + for(size_t i = 0; i < ops.size(); ++i) + { + LaueOps::Pointer op = ops[i]; + const std::string rpg = op->getRotationPointGroup(); + if(seen.count(rpg) > 0) + { + continue; + } + seen.insert(rpg); + + Rgb color = op->generateIPFColor(identityEuler, cAxisSampleDir, false, ebsdlib::ColorKeyKind::TSL); + int r = RgbColor::dRed(color); + int g = RgbColor::dGreen(color); + int b = RgbColor::dBlue(color); + + INFO(op->getSymmetryName() << " (" << rpg << ") c-axis -> RGB(" << r << ", " << g << ", " << b << ")"); + // Red-dominant, and green+blue should be low (pure-red triangle vertex) + CHECK(r >= 200); + CHECK(g <= 60); + CHECK(b <= 60); + } +} + +// ----------------------------------------------------------------------------- +// Per-Laue-class FundamentalSectorGeometry lookup so each Laue class's +// NolzeHielscherColorKey is constructed with its own sector instead of the +// cubicHigh placeholder used elsewhere in this file. +namespace +{ +ebsdlib::FundamentalSectorGeometry SectorForRotationPointGroup(const std::string& rpg) +{ + if(rpg == "432") + { + return ebsdlib::FundamentalSectorGeometry::cubicHigh(); + } + if(rpg == "23") + { + return ebsdlib::FundamentalSectorGeometry::cubicLow(); + } + if(rpg == "622") + { + return ebsdlib::FundamentalSectorGeometry::hexagonalHigh(); + } + if(rpg == "6") + { + return ebsdlib::FundamentalSectorGeometry::hexagonalLow(); + } + if(rpg == "422") + { + return ebsdlib::FundamentalSectorGeometry::tetragonalHigh(); + } + if(rpg == "4") + { + return ebsdlib::FundamentalSectorGeometry::tetragonalLow(); + } + if(rpg == "32") + { + return ebsdlib::FundamentalSectorGeometry::trigonalHigh(); + } + if(rpg == "3") + { + return ebsdlib::FundamentalSectorGeometry::trigonalLow(); + } + if(rpg == "222") + { + return ebsdlib::FundamentalSectorGeometry::orthorhombic(); + } + if(rpg == "2") + { + return ebsdlib::FundamentalSectorGeometry::monoclinic(); + } + return ebsdlib::FundamentalSectorGeometry::triclinic(); +} +} // namespace + +// ----------------------------------------------------------------------------- +// Dump every Laue class's IPF legend with the TSL color key (EbsdLib's +// default) into Testing/Temporary/IPFComparison//. Companion MATLAB +// script at Code_Review/compare_ipf_legends_all_laue.m emits matching +// mtex_ipf_legend_tsl.png and mtex_ipf_legend_hsv.png so the two pairs can +// be compared apples-to-apples per Laue class: +// ebsdlib_ipf_legend_tsl.png vs mtex_ipf_legend_tsl.png (TSL key) +// ebsdlib_ipf_legend_nh.png vs mtex_ipf_legend_hsv.png (NH = MTEX HSV) +// (Analogous to the PoleFigureLaueComparisonTest.) +TEST_CASE("ebsdlib::IPFLegendTest::TSL_Compare_MTEX_IPF_Legends", "[EbsdLib][IPFLegendTest]") +{ + const std::string baseDir = std::string(ebsdlib::unit_test::k_TestTempDir) + "IPFComparison"; + std::filesystem::create_directories(baseDir); + + std::vector ops = LaueOps::GetAllOrientationOps(); + std::set seen; + + std::ofstream master(baseDir + "/manifest.txt"); + master << "# IPF legend Laue-class comparison\n"; + master << "# columns: rotationPointGroup, symmetryName\n"; + + for(size_t i = 0; i < ops.size(); ++i) + { + LaueOps::Pointer op = ops[i]; + const std::string rpg = op->getRotationPointGroup(); + if(seen.count(rpg) > 0) + { + continue; + } + seen.insert(rpg); + + std::string safe = rpg; + for(char& c : safe) + { + if(c == '/' || c == ' ') + { + c = '_'; + } + } + + std::string dir = baseDir + "/" + safe; + std::filesystem::create_directories(dir); + + // TSL legend (per-pixel sampling, EbsdLib default). + { + auto legend = op->generateIPFTriangleLegend(1024, false, ebsdlib::HexConvention::XParallelAStar, ebsdlib::ColorKeyKind::TSL, /*gridded=*/false); + REQUIRE(legend != nullptr); + std::string tifPath = dir + "/tsl_ebsdlib_ipf_legend.png"; + auto result = PngWriter::WriteColorImage(tifPath, 1024, 1024, 3, legend->data()); + REQUIRE(result.first == 0); + } + + // Gridded TSL legend. MTEX renders all its color keys via 1-degree grid + // sampling; this is the apples-to-apples render style for comparison + // against MTEX ipfTSLKey output. + { + auto legend = op->generateIPFTriangleLegend(1024, false, ebsdlib::HexConvention::XParallelAStar, ebsdlib::ColorKeyKind::TSL, /*gridded=*/true); + REQUIRE(legend != nullptr); + std::string tifPath = dir + "/tsl_gridded_ebsdlib_ipf_legend.png"; + auto result = PngWriter::WriteColorImage(tifPath, 1024, 1024, 3, legend->data()); + REQUIRE(result.first == 0); + } + + master << rpg << "," << op->getSymmetryName() << "\n"; + } +} + +// ----------------------------------------------------------------------------- +// Dump every Laue class's IPF legend with MTEX Nolze-Hielscher color key (the EbsdLib analog of MTEX's +// ipfHSVKey) into Testing/Temporary/IPFComparison//. Companion MATLAB +// script at Code_Review/compare_ipf_legends_all_laue.m emits matching +// mtex_ipf_legend_tsl.png and mtex_ipf_legend_hsv.png so the two pairs can +// be compared apples-to-apples per Laue class: +// ebsdlib_ipf_legend_tsl.png vs mtex_ipf_legend_tsl.png (TSL key) +// ebsdlib_ipf_legend_nh.png vs mtex_ipf_legend_hsv.png (NH = MTEX HSV) +// (Analogous to the PoleFigureLaueComparisonTest.) +TEST_CASE("ebsdlib::IPFLegendTest::NH_Compare_MTEX_IPF_Legends", "[EbsdLib][IPFLegendTest]") +{ + const std::string baseDir = std::string(ebsdlib::unit_test::k_TestTempDir) + "IPFComparison"; + std::filesystem::create_directories(baseDir); + + std::vector ops = LaueOps::GetAllOrientationOps(); + std::set seen; + + std::ofstream master(baseDir + "/manifest.txt"); + master << "# IPF legend Laue-class comparison\n"; + master << "# columns: rotationPointGroup, symmetryName\n"; + + for(size_t i = 0; i < ops.size(); ++i) + { + LaueOps::Pointer op = ops[i]; + const std::string rpg = op->getRotationPointGroup(); + if(seen.count(rpg) > 0) + { + continue; + } + seen.insert(rpg); + + std::string safe = rpg; + for(char& c : safe) + { + if(c == '/' || c == ' ') + { + c = '_'; + } + } + + std::string dir = baseDir + "/" + safe; + std::filesystem::create_directories(dir); + + // Nolze-Hielscher legend (per-pixel sampling). Compare against MTEX ipfHSVKey. + // Each LaueOps subclass owns its own per-class NH singleton built from the + // corresponding FundamentalSectorGeometry; we just pick the kind here. + { + auto legend = op->generateIPFTriangleLegend(1024, false, ebsdlib::HexConvention::XParallelAStar, ebsdlib::ColorKeyKind::NolzeHielscher, /*gridded=*/false); + REQUIRE(legend != nullptr); + std::string tifPath = dir + "/nh_ebsdlib_ipf_legend.png"; + auto result = PngWriter::WriteColorImage(tifPath, 1024, 1024, 3, legend->data()); + REQUIRE(result.first == 0); + } + + // Gridded Nolze-Hielscher legend (1-degree flat-shaded cells, MTEX-style). + { + auto legend = op->generateIPFTriangleLegend(1024, false, ebsdlib::HexConvention::XParallelAStar, ebsdlib::ColorKeyKind::NolzeHielscher, /*gridded=*/true); + REQUIRE(legend != nullptr); + std::string tifPath = dir + "/nh_gridded_ebsdlib_ipf_legend.png"; + auto result = PngWriter::WriteColorImage(tifPath, 1024, 1024, 3, legend->data()); + REQUIRE(result.first == 0); + } + + master << rpg << "," << op->getSymmetryName() << "\n"; + } +} + +// ----------------------------------------------------------------------------- +// Dump every Laue class's IPF legend with MTEX Nolze-Hielscher color key (the EbsdLib analog of MTEX's +// ipfHSVKey) into Testing/Temporary/IPFComparison//. Companion MATLAB +// script at Code_Review/compare_ipf_legends_all_laue.m emits matching +// mtex_ipf_legend_tsl.png and mtex_ipf_legend_hsv.png so the two pairs can +// be compared apples-to-apples per Laue class: +// ebsdlib_ipf_legend_tsl.png vs mtex_ipf_legend_tsl.png (TSL key) +// ebsdlib_ipf_legend_nh.png vs mtex_ipf_legend_hsv.png (NH = MTEX HSV) +// (Analogous to the PoleFigureLaueComparisonTest.) +TEST_CASE("ebsdlib::IPFLegendTest::PUCM_Compare_MTEX_IPF_Legends", "[EbsdLib][IPFLegendTest]") +{ + const std::string baseDir = std::string(ebsdlib::unit_test::k_TestTempDir) + "IPFComparison"; + std::filesystem::create_directories(baseDir); + + std::vector ops = LaueOps::GetAllOrientationOps(); + std::set seen; + + std::ofstream master(baseDir + "/manifest.txt"); + master << "# IPF legend Laue-class comparison\n"; + master << "# columns: rotationPointGroup, symmetryName\n"; + + for(size_t i = 0; i < ops.size(); ++i) + { + LaueOps::Pointer op = ops[i]; + const std::string rpg = op->getRotationPointGroup(); + if(seen.count(rpg) > 0) + { + continue; + } + seen.insert(rpg); + + std::string safe = rpg; + for(char& c : safe) + { + if(c == '/' || c == ' ') + { + c = '_'; + } + } + + std::string dir = baseDir + "/" + safe; + std::filesystem::create_directories(dir); + + // PUCM legend (per-pixel). Each LaueOps subclass owns its own per-class + // PUCM singleton (rotation point group baked in). + { + auto legend = op->generateIPFTriangleLegend(1024, false, ebsdlib::HexConvention::XParallelAStar, ebsdlib::ColorKeyKind::PUCM, /*gridded=*/false); + REQUIRE(legend != nullptr); + std::string tifPath = dir + "/pucm_ebsdlib_ipf_legend.png"; + auto result = PngWriter::WriteColorImage(tifPath, 1024, 1024, 3, legend->data()); + REQUIRE(result.first == 0); + } + + // Gridded PUCM legend (1-degree flat-shaded cells, MTEX-style). + { + auto legend = op->generateIPFTriangleLegend(1024, false, ebsdlib::HexConvention::XParallelAStar, ebsdlib::ColorKeyKind::PUCM, /*gridded=*/true); + REQUIRE(legend != nullptr); + std::string tifPath = dir + "/pucm_gridded_ebsdlib_ipf_legend.png"; + auto result = PngWriter::WriteColorImage(tifPath, 1024, 1024, 3, legend->data()); + REQUIRE(result.first == 0); + } + + master << rpg << "," << op->getSymmetryName() << "\n"; + } +} diff --git a/Source/Test/ImageCropTest.cpp b/Source/Test/ImageCropTest.cpp new file mode 100644 index 00000000..f2f028f1 --- /dev/null +++ b/Source/Test/ImageCropTest.cpp @@ -0,0 +1,148 @@ +/* ============================================================================ + * Copyright (c) 2009-2025 BlueQuartz Software, LLC + * + * SPDX-License-Identifier: BSD-3-Clause + * + * Tests for the ebsdlib::CropImageToContent helper used by the IPF triangle + * legend renderer to trim the large white margins around the SST. + * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ + +#include + +#include "EbsdLib/Core/EbsdDataArray.hpp" +#include "EbsdLib/Utilities/ImageCrop.hpp" + +#include +#include + +using namespace ebsdlib; + +namespace +{ +// Build a 100x100 RGB canvas of all-white pixels with a single colored +// rectangle from (rectX, rectY) to (rectX+rectW-1, rectY+rectH-1). +UInt8ArrayType::Pointer makeRectImage(int canvasDim, int rectX, int rectY, int rectW, int rectH, std::array color) +{ + auto img = UInt8ArrayType::CreateArray(static_cast(canvasDim * canvasDim), {3ULL}, "rect", true); + uint8_t* p = img->getPointer(0); + for(int i = 0; i < canvasDim * canvasDim; ++i) + { + p[i * 3] = 255; + p[i * 3 + 1] = 255; + p[i * 3 + 2] = 255; + } + for(int y = rectY; y < rectY + rectH; ++y) + { + for(int x = rectX; x < rectX + rectW; ++x) + { + const size_t idx = (static_cast(y) * canvasDim + static_cast(x)) * 3; + p[idx] = color[0]; + p[idx + 1] = color[1]; + p[idx + 2] = color[2]; + } + } + return img; +} +} // namespace + +TEST_CASE("ebsdlib::ImageCropTest::CropsToBoundingBoxPlusPadding", "[EbsdLib][ImageCropTest]") +{ + constexpr int k_CanvasDim = 100; + constexpr int k_Padding = 4; + + // Red 20x10 rectangle at (40, 30) on a 100x100 white canvas. + auto img = makeRectImage(k_CanvasDim, 40, 30, 20, 10, {255, 0, 0}); + + auto cropped = CropImageToContent(img.get(), k_CanvasDim, k_CanvasDim, /*channels*/ 3, k_Padding); + + REQUIRE(cropped.image != nullptr); + // Bounding box: x in [40, 59], y in [30, 39] -> 20x10 + // Plus padding on each side: width = 20 + 2*4 = 28, height = 10 + 2*4 = 18 + CHECK(cropped.width == 28); + CHECK(cropped.height == 18); + CHECK(cropped.image->getNumberOfTuples() == static_cast(cropped.width * cropped.height)); +} + +TEST_CASE("ebsdlib::ImageCropTest::ClampsBoundingBoxToCanvas", "[EbsdLib][ImageCropTest]") +{ + constexpr int k_CanvasDim = 50; + + // Small rectangle at the corner; padding would push the bounding box + // outside the canvas but must be clamped. + auto img = makeRectImage(k_CanvasDim, 0, 0, 5, 5, {0, 255, 0}); + auto cropped = CropImageToContent(img.get(), k_CanvasDim, k_CanvasDim, 3, /*padding*/ 100); + + REQUIRE(cropped.image != nullptr); + CHECK(cropped.width == k_CanvasDim); + CHECK(cropped.height == k_CanvasDim); +} + +TEST_CASE("ebsdlib::ImageCropTest::AllWhiteImageReturnsOriginalSize", "[EbsdLib][ImageCropTest]") +{ + // A pathological all-white canvas has no non-background content; we + // should not crash and not return an empty image. Returning the + // original canvas is the safe fallback. + constexpr int k_CanvasDim = 32; + auto img = UInt8ArrayType::CreateArray(static_cast(k_CanvasDim * k_CanvasDim), {3ULL}, "white", true); + uint8_t* p = img->getPointer(0); + for(int i = 0; i < k_CanvasDim * k_CanvasDim * 3; ++i) + { + p[i] = 255; + } + auto cropped = CropImageToContent(img.get(), k_CanvasDim, k_CanvasDim, 3, 4); + REQUIRE(cropped.image != nullptr); + CHECK(cropped.width == k_CanvasDim); + CHECK(cropped.height == k_CanvasDim); +} + +TEST_CASE("ebsdlib::ImageCropTest::CroppedPixelsMatchSource", "[EbsdLib][ImageCropTest]") +{ + // A blue rectangle. The cropped image's pixels should match the + // corresponding source pixels (within the bounding-box+padding window). + constexpr int k_CanvasDim = 64; + constexpr int k_RectX = 20; + constexpr int k_RectY = 25; + constexpr int k_RectW = 8; + constexpr int k_RectH = 6; + constexpr int k_Padding = 2; + + auto img = makeRectImage(k_CanvasDim, k_RectX, k_RectY, k_RectW, k_RectH, {0, 0, 255}); + auto cropped = CropImageToContent(img.get(), k_CanvasDim, k_CanvasDim, 3, k_Padding); + + REQUIRE(cropped.image != nullptr); + CHECK(cropped.width == k_RectW + 2 * k_Padding); + CHECK(cropped.height == k_RectH + 2 * k_Padding); + + // Center pixel of the rectangle in the cropped image should be blue. + const int centerXcropped = (cropped.width / 2); + const int centerYcropped = (cropped.height / 2); + const size_t idx = (static_cast(centerYcropped) * cropped.width + static_cast(centerXcropped)) * 3; + const uint8_t* p = cropped.image->getPointer(0); + CHECK(static_cast(p[idx]) == 0); + CHECK(static_cast(p[idx + 1]) == 0); + CHECK(static_cast(p[idx + 2]) == 255); +} + +// ----------------------------------------------------------------------------- +// Integration test: feed a real IPF triangle legend into the cropper and +// assert the output is meaningfully smaller than the input canvas. +// HexagonalHigh's SST is a 30° wedge, so the canvas has a lot of whitespace +// and crop should produce a noticeably smaller image. +#include "EbsdLib/LaueOps/HexagonalOps.h" + +TEST_CASE("ebsdlib::ImageCropTest::HexagonalHighLegendIsCroppedSmaller", "[EbsdLib][ImageCropTest]") +{ + HexagonalOps ops; + constexpr int k_CanvasDim = 512; + auto legend = ops.generateIPFTriangleLegend(k_CanvasDim, /*generateEntirePlane*/ false, ebsdlib::HexConvention::XParallelAStar); + REQUIRE(legend != nullptr); + REQUIRE(legend->getNumberOfTuples() == static_cast(k_CanvasDim * k_CanvasDim)); + + auto cropped = CropImageToContent(legend.get(), k_CanvasDim, k_CanvasDim, /*channels*/ 3, /*padding*/ 8); + REQUIRE(cropped.image != nullptr); + CHECK(cropped.width < k_CanvasDim); + CHECK(cropped.height < k_CanvasDim); + // Sanity: not so aggressive that we trimmed actual content (>= half the canvas means we left the SST + labels). + CHECK(cropped.width > k_CanvasDim / 4); + CHECK(cropped.height > k_CanvasDim / 4); +} diff --git a/Source/Test/InversePoleFigureTest.cpp b/Source/Test/InversePoleFigureTest.cpp new file mode 100644 index 00000000..c24a61ed --- /dev/null +++ b/Source/Test/InversePoleFigureTest.cpp @@ -0,0 +1,428 @@ +/* ============================================================================ + * Copyright (c) 2009-2025 BlueQuartz Software, LLC + * + * Redistribution and use in source and binary forms, with or without modification, + * are permitted provided that the following conditions are met: + * + * Redistributions of source code must retain the above copyright notice, this + * list of conditions and the following disclaimer. + * + * Redistributions in binary form must reproduce the above copyright notice, this + * list of conditions and the following disclaimer in the documentation and/or + * other materials provided with the distribution. + * + * Neither the name of BlueQuartz Software, the US Air Force, nor the names of its + * contributors may be used to endorse or promote products derived from this software + * without specific prior written permission. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE + * DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE + * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR + * SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, + * OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE + * USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + * + * The code contained herein was partially funded by the following contracts: + * United States Air Force Prime Contract FA8650-07-D-5800 + * United States Air Force Prime Contract FA8650-10-D-5210 + * United States Prime Contract Navy N00173-07-C-2068 + * + * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ + +#include + +#include "EbsdLib/Core/EbsdDataArray.hpp" +#include "EbsdLib/Core/EbsdLibConstants.h" +#include "EbsdLib/LaueOps/LaueOps.h" +#include "EbsdLib/Utilities/InversePoleFigureUtilities.h" + +#include +#include +#include + +using namespace ebsdlib; + +namespace +{ +// Helper to generate random Euler angles (in radians) +ebsdlib::FloatArrayType::Pointer generateRandomEulers(size_t numOrientations, unsigned int seed = 42) +{ + std::vector cDims = {3}; + auto eulers = ebsdlib::FloatArrayType::CreateArray(numOrientations, cDims, "EulerAngles", true); + + std::mt19937 gen(seed); + std::uniform_real_distribution phi1Dist(0.0f, static_cast(ebsdlib::constants::k_2PiD)); + std::uniform_real_distribution phiDist(0.0f, static_cast(ebsdlib::constants::k_PiD)); + std::uniform_real_distribution phi2Dist(0.0f, static_cast(ebsdlib::constants::k_2PiD)); + + for(size_t i = 0; i < numOrientations; i++) + { + float* ptr = eulers->getTuplePointer(i); + ptr[0] = phi1Dist(gen); + ptr[1] = phiDist(gen); + ptr[2] = phi2Dist(gen); + } + return eulers; +} + +// Helper to generate single-crystal Euler angles (all orientations identical) +ebsdlib::FloatArrayType::Pointer generateSingleCrystalEulers(size_t numOrientations, float e0, float e1, float e2) +{ + std::vector cDims = {3}; + auto eulers = ebsdlib::FloatArrayType::CreateArray(numOrientations, cDims, "EulerAngles", true); + + for(size_t i = 0; i < numOrientations; i++) + { + float* ptr = eulers->getTuplePointer(i); + ptr[0] = e0; + ptr[1] = e1; + ptr[2] = e2; + } + return eulers; +} + +// Standard orthogonal sample directions: RD=[1,0,0], TD=[0,1,0], ND=[0,0,1] +InversePoleFigureConfiguration_t createDefaultConfig(ebsdlib::FloatArrayType* eulers) +{ + InversePoleFigureConfiguration_t config; + config.eulers = eulers; + config.sampleDirections = {Matrix3X1D(1.0, 0.0, 0.0), Matrix3X1D(0.0, 1.0, 0.0), Matrix3X1D(0.0, 0.0, 1.0)}; + config.imageWidth = 64; + config.imageHeight = 64; + config.lambertDim = 32; + config.numColors = 32; + config.colorMap = "Default"; + config.normalizeMRD = true; + config.labels = {"RD", "TD", "ND"}; + config.phaseName = "TestPhase"; + config.FlipFinalImage = false; + return config; +} + +} // namespace + +// ----------------------------------------------------------------------------- +TEST_CASE("ebsdlib::InversePoleFigureTest::Configuration_Fields", "[EbsdLib][InversePoleFigureTest]") +{ + InversePoleFigureConfiguration_t config; + config.eulers = nullptr; + config.sampleDirections = {Matrix3X1D(1.0, 0.0, 0.0), Matrix3X1D(0.0, 1.0, 0.0), Matrix3X1D(0.0, 0.0, 1.0)}; + config.imageWidth = 128; + config.imageHeight = 128; + config.lambertDim = 64; + config.numColors = 32; + config.colorMap = "Default"; + config.normalizeMRD = true; + config.labels = {"RD", "TD", "ND"}; + config.phaseName = "Phase1"; + config.FlipFinalImage = false; + + REQUIRE(config.imageWidth == 128); + REQUIRE(config.imageHeight == 128); + REQUIRE(config.lambertDim == 64); + REQUIRE(config.numColors == 32); + REQUIRE(config.normalizeMRD == true); + REQUIRE(config.labels.size() == 3); + REQUIRE(config.phaseName == "Phase1"); +} + +// ----------------------------------------------------------------------------- +TEST_CASE("ebsdlib::InversePoleFigureTest::ComputeIPFDirections_Cubic", "[EbsdLib][InversePoleFigureTest]") +{ + auto eulers = generateRandomEulers(100); + auto ops = LaueOps::GetAllOrientationOps(); + // CubicOps is at index 1 + auto& cubicOps = *ops[1]; + + Matrix3X1D nd(0.0, 0.0, 1.0); // Normal direction + auto directions = InversePoleFigureUtilities::computeIPFDirections(cubicOps, eulers.get(), nd); + + REQUIRE(directions != nullptr); + REQUIRE(directions->getNumberOfTuples() > 0); + REQUIRE(directions->getNumberOfComponents() == 3); + + // All returned directions should be on the unit sphere (magnitude ~1.0) + for(size_t i = 0; i < directions->getNumberOfTuples(); i++) + { + float* dir = directions->getTuplePointer(i); + float mag = std::sqrt(dir[0] * dir[0] + dir[1] * dir[1] + dir[2] * dir[2]); + REQUIRE(mag == Approx(1.0f).margin(0.01f)); + } + + // All returned directions should have z >= 0 (upper hemisphere) + for(size_t i = 0; i < directions->getNumberOfTuples(); i++) + { + float* dir = directions->getTuplePointer(i); + REQUIRE(dir[2] >= -0.01f); // Allow small numerical tolerance + } +} + +// ----------------------------------------------------------------------------- +TEST_CASE("ebsdlib::InversePoleFigureTest::ComputeIPFIntensity_Cubic", "[EbsdLib][InversePoleFigureTest]") +{ + auto eulers = generateRandomEulers(500); + auto ops = LaueOps::GetAllOrientationOps(); + auto& cubicOps = *ops[1]; + + Matrix3X1D nd(0.0, 0.0, 1.0); + auto directions = InversePoleFigureUtilities::computeIPFDirections(cubicOps, eulers.get(), nd); + + int imageWidth = 64; + int imageHeight = 64; + int lambertDim = 32; + + auto intensity = InversePoleFigureUtilities::computeIPFIntensity(cubicOps, directions.get(), imageWidth, imageHeight, lambertDim, true); + + REQUIRE(intensity != nullptr); + REQUIRE(intensity->getNumberOfTuples() == static_cast(imageWidth * imageHeight)); + + // Check that we have some pixels inside the SST (value >= 0) and some outside (value == -1) + bool hasInsideSST = false; + bool hasOutsideSST = false; + double* dataPtr = intensity->getPointer(0); + for(size_t i = 0; i < intensity->getNumberOfTuples(); i++) + { + if(dataPtr[i] >= 0.0) + { + hasInsideSST = true; + } + if(dataPtr[i] < 0.0) + { + hasOutsideSST = true; + } + if(hasInsideSST && hasOutsideSST) + { + break; + } + } + REQUIRE(hasInsideSST); + REQUIRE(hasOutsideSST); +} + +// ----------------------------------------------------------------------------- +TEST_CASE("ebsdlib::InversePoleFigureTest::CreateIPFColorImage", "[EbsdLib][InversePoleFigureTest]") +{ + int imageWidth = 16; + int imageHeight = 16; + int numColors = 16; + + // Create a test intensity image with some SST values and some -1 (outside) + auto intensity = DoubleArrayType::CreateArray(static_cast(imageWidth * imageHeight), {1ULL}, "Intensity", true); + double* dataPtr = intensity->getPointer(0); + for(int i = 0; i < imageWidth * imageHeight; i++) + { + if(i % 3 == 0) + { + dataPtr[i] = -1.0; // Outside SST + } + else + { + dataPtr[i] = static_cast(i) / static_cast(imageWidth * imageHeight); + } + } + + std::vector cDims = {4}; + auto rgba = UInt8ArrayType::CreateArray(static_cast(imageWidth * imageHeight), cDims, "RGBA", true); + rgba->initializeWithZeros(); + + InversePoleFigureUtilities::createIPFColorImage(intensity.get(), imageWidth, imageHeight, numColors, 0.0, 1.0, rgba.get()); + + // Verify image was populated + bool hasNonZero = false; + bool hasWhite = false; + for(size_t i = 0; i < rgba->getNumberOfTuples(); i++) + { + uint8_t* pixel = rgba->getTuplePointer(i); + uint32_t rgbaVal = *reinterpret_cast(pixel); + if(rgbaVal == 0xFFFFFFFF) + { + hasWhite = true; + } + else if(pixel[0] != 0 || pixel[1] != 0 || pixel[2] != 0 || pixel[3] != 0) + { + hasNonZero = true; + } + } + REQUIRE(hasNonZero); + REQUIRE(hasWhite); +} + +// ----------------------------------------------------------------------------- +TEST_CASE("ebsdlib::InversePoleFigureTest::GenerateInversePoleFigure_AllLaueClasses", "[EbsdLib][InversePoleFigureTest]") +{ + auto eulers = generateRandomEulers(200); + auto ops = LaueOps::GetAllOrientationOps(); + + for(size_t index = 0; index < 11; index++) + { + SECTION(ops[index]->getSymmetryName()) + { + auto config = createDefaultConfig(eulers.get()); + auto images = ops[index]->generateInversePoleFigure(config); + + // Should return exactly 3 images + REQUIRE(images.size() == 3); + + for(size_t imgIdx = 0; imgIdx < 3; imgIdx++) + { + REQUIRE(images[imgIdx] != nullptr); + REQUIRE(images[imgIdx]->getNumberOfTuples() == static_cast(config.imageWidth * config.imageHeight)); + REQUIRE(images[imgIdx]->getNumberOfComponents() == 4); + + // Verify the image has some non-white content (SST region should be colored) + bool hasColoredPixel = false; + for(size_t i = 0; i < images[imgIdx]->getNumberOfTuples(); i++) + { + uint32_t rgbaVal = *reinterpret_cast(images[imgIdx]->getTuplePointer(i)); + if(rgbaVal != 0xFFFFFFFF && rgbaVal != 0x00000000) + { + hasColoredPixel = true; + break; + } + } + REQUIRE(hasColoredPixel); + } + } + } +} + +// ----------------------------------------------------------------------------- +TEST_CASE("ebsdlib::InversePoleFigureTest::GenerateInversePoleFigure_MRD_vs_Counts", "[EbsdLib][InversePoleFigureTest]") +{ + auto eulers = generateRandomEulers(200); + auto ops = LaueOps::GetAllOrientationOps(); + auto& cubicOps = *ops[1]; // Cubic high + + // Test MRD mode + auto configMRD = createDefaultConfig(eulers.get()); + configMRD.normalizeMRD = true; + auto imagesMRD = cubicOps.generateInversePoleFigure(configMRD); + REQUIRE(imagesMRD.size() == 3); + + // Test counts mode + auto configCounts = createDefaultConfig(eulers.get()); + configCounts.normalizeMRD = false; + auto imagesCounts = cubicOps.generateInversePoleFigure(configCounts); + REQUIRE(imagesCounts.size() == 3); + + // Both should produce valid images + for(size_t imgIdx = 0; imgIdx < 3; imgIdx++) + { + REQUIRE(imagesMRD[imgIdx] != nullptr); + REQUIRE(imagesCounts[imgIdx] != nullptr); + } +} + +// ----------------------------------------------------------------------------- +TEST_CASE("ebsdlib::InversePoleFigureTest::SingleCrystalTexture_Cubic", "[EbsdLib][InversePoleFigureTest]") +{ + // All orientations are identity (0, 0, 0 Euler angles) + // For ND=[0,0,1], the crystal direction in the SST should be [001] + auto eulers = generateSingleCrystalEulers(500, 0.0f, 0.0f, 0.0f); + auto ops = LaueOps::GetAllOrientationOps(); + auto& cubicOps = *ops[1]; + + Matrix3X1D nd(0.0, 0.0, 1.0); + auto directions = InversePoleFigureUtilities::computeIPFDirections(cubicOps, eulers.get(), nd); + + REQUIRE(directions != nullptr); + REQUIRE(directions->getNumberOfTuples() == 500); + + // All directions should be very close to [001] = (0, 0, 1) + for(size_t i = 0; i < directions->getNumberOfTuples(); i++) + { + float* dir = directions->getTuplePointer(i); + REQUIRE(std::fabs(dir[0]) < 0.01f); + REQUIRE(std::fabs(dir[1]) < 0.01f); + REQUIRE(dir[2] == Approx(1.0f).margin(0.01f)); + } +} + +// ----------------------------------------------------------------------------- +TEST_CASE("ebsdlib::InversePoleFigureTest::ImageDimensions", "[EbsdLib][InversePoleFigureTest]") +{ + auto eulers = generateRandomEulers(100); + auto ops = LaueOps::GetAllOrientationOps(); + auto& cubicOps = *ops[1]; + + int testWidth = 128; + int testHeight = 96; + + auto config = createDefaultConfig(eulers.get()); + config.imageWidth = testWidth; + config.imageHeight = testHeight; + + auto images = cubicOps.generateInversePoleFigure(config); + + REQUIRE(images.size() == 3); + for(auto& img : images) + { + REQUIRE(img->getNumberOfTuples() == static_cast(testWidth * testHeight)); + } +} + +// ----------------------------------------------------------------------------- +// PR 2k regression test: InversePoleFigureConfiguration_t carries a +// HexConvention field, and generateAnnotatedIPFDensity threads it down into +// each per-figure annotateIPFImage call. The annotated density images include +// rendered Miller-index labels around the SST, and PR 2h made those labels +// convention-dependent — under X||a the +X corner reads <2-1-10>; under X||a* +// it reads <11-20>. Output bytes for a hex/trig phase MUST therefore differ +// between conventions; if they don't, conv is being silently dropped through +// the IPF density path the same way the PoleFigureCompositor was dropping it +// before PR 2g. +TEST_CASE("ebsdlib::InversePoleFigureTest::AnnotatedIPFDensity_PropagatesHexConvention", "[EbsdLib][InversePoleFigureTest]") +{ + // Need a hex/trig phase for the convention to matter. HexagonalOps is + // CrystalStructure::Hexagonal_High = index 0. + auto ops = LaueOps::GetAllOrientationOps(); + auto& hexOps = *ops[ebsdlib::CrystalStructure::Hexagonal_High]; + + auto eulers = generateRandomEulers(64); + + InversePoleFigureConfiguration_t configAStar; + configAStar.eulers = eulers.get(); + configAStar.sampleDirections = {Matrix3X1D(1.0, 0.0, 0.0), Matrix3X1D(0.0, 1.0, 0.0), Matrix3X1D(0.0, 0.0, 1.0)}; + configAStar.imageWidth = 64; + configAStar.imageHeight = 64; + configAStar.lambertDim = 16; + configAStar.numColors = 16; + configAStar.colorMap = "Default"; + configAStar.normalizeMRD = false; + configAStar.labels = {"RD", "TD", "ND"}; + configAStar.phaseName = "TestHex"; + configAStar.FlipFinalImage = false; + configAStar.hexConvention = ebsdlib::HexConvention::XParallelAStar; + + InversePoleFigureConfiguration_t configA = configAStar; + configA.hexConvention = ebsdlib::HexConvention::XParallelA; + + auto imagesAStar = hexOps.generateAnnotatedIPFDensity(configAStar); + auto imagesA = hexOps.generateAnnotatedIPFDensity(configA); + + REQUIRE(imagesAStar.size() == 3); + REQUIRE(imagesA.size() == 3); + REQUIRE(imagesAStar[0] != nullptr); + REQUIRE(imagesA[0] != nullptr); + REQUIRE(imagesAStar[0]->getNumberOfTuples() == imagesA[0]->getNumberOfTuples()); + + // The annotated images must differ somewhere — the rendered Miller-index + // text pixels are different between conventions. + bool different = false; + const size_t total = imagesAStar[0]->getSize(); + const uint8_t* pAStar = imagesAStar[0]->getPointer(0); + const uint8_t* pA = imagesA[0]->getPointer(0); + for(size_t i = 0; i < total; ++i) + { + if(pAStar[i] != pA[i]) + { + different = true; + break; + } + } + CHECK(different); +} diff --git a/Source/Test/LaueOpsTest.cpp b/Source/Test/LaueOpsTest.cpp index 5cea9267..b84583c1 100644 --- a/Source/Test/LaueOpsTest.cpp +++ b/Source/Test/LaueOpsTest.cpp @@ -23,6 +23,174 @@ using namespace ebsdlib; +// ----------------------------------------------------------------------------- +// PR 2i regression tests: getDefaultPoleFigureNames must honor HexConvention. +// Under X||a we follow the OIM/EDAX naming convention for the a-family +// ({"<2-1-10>"}); under X||a* we follow MTEX's choice ({"<11-20>"}). The +// labels are sym-equivalent representatives of the same orbit, but they're +// what the corresponding software ecosystem prints, and a user reading +// EbsdLib output expects to see what their toolchain (OIM vs MTEX) labels. +// +// Trigonal classes have two distinct prism families and the OIM/MTEX label +// dichotomy doesn't apply cleanly there — we don't assert difference between +// conventions for those, only that the conv parameter is plumbed (no crash, +// returns three non-empty strings). +TEST_CASE("ebsdlib::LaueOpsTest::GetDefaultPoleFigureNames_HexConvention", "[EbsdLib][LaueOpsTest]") +{ + SECTION("HexagonalHigh: a-family label flips between conventions") + { + HexagonalOps ops; + auto labelsA = ops.getDefaultPoleFigureNames(ebsdlib::HexConvention::XParallelA); + auto labelsAStar = ops.getDefaultPoleFigureNames(ebsdlib::HexConvention::XParallelAStar); + CHECK(labelsA[0] == "<0001>"); + CHECK(labelsAStar[0] == "<0001>"); + CHECK(labelsA[1] == labelsAStar[1]); // prism slot identical + CHECK(labelsA[2] != labelsAStar[2]); // a-family slot differs + CHECK(labelsA[2] == "<2-1-10>"); + CHECK(labelsAStar[2] == "<11-20>"); + } + + SECTION("HexagonalLow: same a-family flip as HexagonalHigh") + { + HexagonalLowOps ops; + auto labelsA = ops.getDefaultPoleFigureNames(ebsdlib::HexConvention::XParallelA); + auto labelsAStar = ops.getDefaultPoleFigureNames(ebsdlib::HexConvention::XParallelAStar); + CHECK(labelsA[0] == "<0001>"); + CHECK(labelsA[1] == labelsAStar[1]); + CHECK(labelsA[2] != labelsAStar[2]); + CHECK(labelsA[2] == "<2-1-10>"); + CHECK(labelsAStar[2] == "<11-20>"); + } + + SECTION("Trigonal classes: conv parameter is plumbed without crash") + { + TrigonalOps tHigh; + auto tHighA = tHigh.getDefaultPoleFigureNames(ebsdlib::HexConvention::XParallelA); + auto tHighAStar = tHigh.getDefaultPoleFigureNames(ebsdlib::HexConvention::XParallelAStar); + CHECK(tHighA.size() == 3ULL); + for(const auto& s : tHighA) + { + CHECK_FALSE(s.empty()); + } + for(const auto& s : tHighAStar) + { + CHECK_FALSE(s.empty()); + } + + TrigonalLowOps tLow; + auto tLowA = tLow.getDefaultPoleFigureNames(ebsdlib::HexConvention::XParallelA); + auto tLowAStar = tLow.getDefaultPoleFigureNames(ebsdlib::HexConvention::XParallelAStar); + for(const auto& s : tLowA) + { + CHECK_FALSE(s.empty()); + } + for(const auto& s : tLowAStar) + { + CHECK_FALSE(s.empty()); + } + } +} + +// ----------------------------------------------------------------------------- +// PR 2i regression test: HexagonalOps::generatePoleFigure must propagate +// config.hexConvention into its internal getDefaultPoleFigureNames() call. +// Without this, the rendered PF panel labels are stuck on whatever the +// no-arg default returns regardless of caller intent. +TEST_CASE("ebsdlib::LaueOpsTest::GeneratePoleFigure_PropagatesHexConvention", "[EbsdLib][LaueOpsTest]") +{ + HexagonalOps ops; + + // One-orientation Euler array (identity); we don't care about the rendered + // intensity, only about the labels assigned to the three returned figures. + std::vector eulerVec = {0.0F, 0.0F, 0.0F}; + std::vector compDims = {3ULL}; + auto eulers = ebsdlib::FloatArrayType::FromStdVector(eulerVec, 1ULL, 3ULL, "Eulers"); + + PoleFigureConfiguration_t cfgA; + cfgA.eulers = eulers.get(); + cfgA.imageDim = 64; + cfgA.lambertDim = 16; + cfgA.numColors = 16; + cfgA.discrete = false; + cfgA.discreteHeatMap = false; + cfgA.hexConvention = ebsdlib::HexConvention::XParallelA; + + PoleFigureConfiguration_t cfgAStar = cfgA; + cfgAStar.hexConvention = ebsdlib::HexConvention::XParallelAStar; + + auto figuresA = ops.generatePoleFigure(cfgA); + auto figuresAStar = ops.generatePoleFigure(cfgAStar); + + // The renderer assigns the names array to figuresA[i]->getName(); we use + // those to verify the convention-aware string is what made it through. + REQUIRE(figuresA.size() == 3ULL); + REQUIRE(figuresAStar.size() == 3ULL); + CHECK(figuresA[2]->getName() == "<2-1-10>"); + CHECK(figuresAStar[2]->getName() == "<11-20>"); +} + +// ----------------------------------------------------------------------------- +// PR 2h regression test: confirm that generateIPFTriangleLegend honors the +// HexConvention parameter for HexagonalOps. The colored SST region is +// convention-invariant for 6/mmm (the inversion fold + c-axis rotations +// reach the SST regardless of basal-plane sym-op choice — see the +// GenerateIPFColor_HexConvention_HexagonalOps comment below). What MUST +// differ between conventions is the Miller-index labels drawn around the +// unit circle: under X||a the cartesian +X axis is the a-vector +// ([2-1-10]); under X||a* it is the a*-vector ([10-10]). The legend +// rasters must therefore differ byte-for-byte. If they don't, the +// HexConvention parameter is being silently dropped through +// annotateIPFImage / drawIPFAnnotations. +TEST_CASE("ebsdlib::LaueOpsTest::GenerateIPFTriangleLegend_HexConvention_HexagonalOps", "[EbsdLib][LaueOpsTest]") +{ + HexagonalOps ops; + constexpr int k_LegendDim = 256; + auto legendAStar = ops.generateIPFTriangleLegend(k_LegendDim, false, ebsdlib::HexConvention::XParallelAStar); + auto legendA = ops.generateIPFTriangleLegend(k_LegendDim, false, ebsdlib::HexConvention::XParallelA); + + REQUIRE(legendAStar != nullptr); + REQUIRE(legendA != nullptr); + REQUIRE(legendAStar->getSize() == legendA->getSize()); + + // Sanity: both legends are non-trivial (not all-white) so we know the + // SST coloring actually rendered. + bool aStarHasContent = false; + bool aHasContent = false; + const size_t total = legendAStar->getSize(); + for(size_t i = 0; i < total; ++i) + { + if(legendAStar->getValue(i) != 0xFF) + { + aStarHasContent = true; + } + if(legendA->getValue(i) != 0xFF) + { + aHasContent = true; + } + if(aStarHasContent && aHasContent) + { + break; + } + } + REQUIRE(aStarHasContent); + REQUIRE(aHasContent); + + // The two legends must differ somewhere — the corner labels at angles 0° + // and 330° (the SST eta=0 and eta=30° corners for 6/mmm) carry different + // Miller-index strings under the two conventions, so the rasterized text + // pixels must differ. + bool different = false; + for(size_t i = 0; i < total; ++i) + { + if(legendAStar->getValue(i) != legendA->getValue(i)) + { + different = true; + break; + } + } + CHECK(different); +} + // ----------------------------------------------------------------------------- TEST_CASE("ebsdlib::LaueOpsTest::GetAllOrientationOps", "[EbsdLib][LaueOpsTest]") { @@ -139,6 +307,157 @@ TEST_CASE("ebsdlib::LaueOpsTest::GenerateIPFColor_HexagonalOps", "[EbsdLib][Laue CHECK((r + g + b) > 0); } +// ----------------------------------------------------------------------------- +// PR 2c regression test: confirm that generateIPFColor honors the +// HexConvention parameter on HexagonalOps and that the convention-aware +// code path is exercised without crashing or returning garbage. +// +// For HexagonalOps (Laue class 6/mmm), IPF coloring is genuinely +// convention-invariant: the SST (0° <= eta <= 30°, 0° <= chi <= 90°) is +// reached via c-axis rotations plus the inversion fold (p[2] < 0 -> flip), +// and c-axis rotations are basis-invariant. The basal-plane 180° sym ops +// that differ between X||a and X||a* are operationally redundant for this +// Laue class -- any orientation reachable via a basal op is also reachable +// via the c-rotation/inversion combo. +// +// So the expected behavior here is: both conventions produce the SAME +// non-trivial RGB. PR 2d will exercise HexagonalLowOps / TrigonalOps / +// TrigonalLowOps where the SST geometry is different and the convention +// parameter MAY produce different IPF colors; that's where any color-shift +// regression would manifest. +// HexagonalOps::generateIPFColor is convention-invariant (the SST is invariant +// under the X||a ↔ X||a* basis rotation). The new API no longer takes a +// HexConvention argument; this test confirms the call returns a non-trivial +// color and behaves identically whether kind is default-omitted or TSL-explicit. +TEST_CASE("ebsdlib::LaueOpsTest::GenerateIPFColor_TSL_HexagonalOps", "[EbsdLib][LaueOpsTest]") +{ + HexagonalOps hexOps; + // Phi=90° tilts the c-axis into the basal plane, putting a basal-plane + // direction along sample-z (the IPF-Z reference direction). A non-trivial + // orientation that exercises the FZ-reduction loop. + double eulers[3] = {0.0, 90.0 * ebsdlib::constants::k_PiOver180D, 0.0}; + double refDir[3] = {0.0, 0.0, 1.0}; + + Rgb colorDefault = hexOps.generateIPFColor(eulers, refDir, false); + Rgb colorTslExplicit = hexOps.generateIPFColor(eulers, refDir, false, ebsdlib::ColorKeyKind::TSL); + + CHECK(colorDefault == colorTslExplicit); + + const int r = RgbColor::dRed(colorDefault); + const int g = RgbColor::dGreen(colorDefault); + const int b = RgbColor::dBlue(colorDefault); + CHECK((r + g + b) > 0); +} + +// ----------------------------------------------------------------------------- +// PR 2d regression tests: same convention dispatch and same closed-form +// expectation as PR 2b but for HexagonalLowOps, TrigonalOps, and +// TrigonalLowOps. For all four hex/trig classes, family-1's first +// canonical (X||a*) cartesian direction rotates by R_z(+30°) under the +// X||a derivation. The c-axis ({0001}) is invariant. + +#include "EbsdLib/LaueOps/HexagonalLowOps.h" +#include "EbsdLib/LaueOps/TrigonalLowOps.h" +#include "EbsdLib/LaueOps/TrigonalOps.h" + +namespace +{ +template +void checkSphereCoordsConvention(const ebsdlib::Matrix3X1D& expectedFamily1FirstAStar) +{ + OpsT ops; + std::vector eulerVec = {0.0F, 0.0F, 0.0F}; // identity orientation + std::vector dims = {3ULL}; + ebsdlib::FloatArrayType::Pointer eulers = ebsdlib::FloatArrayType::FromStdVector(eulerVec, 1ULL, 3ULL, "Eulers"); + ebsdlib::FloatArrayType::Pointer xyz0001 = ebsdlib::FloatArrayType::CreateArray(2ULL, dims, "f0", true); + ebsdlib::FloatArrayType::Pointer xyz1010_aStar = ebsdlib::FloatArrayType::CreateArray(6ULL, dims, "f1aStar", true); + ebsdlib::FloatArrayType::Pointer xyz1010_a = ebsdlib::FloatArrayType::CreateArray(6ULL, dims, "f1a", true); + ebsdlib::FloatArrayType::Pointer xyz1120 = ebsdlib::FloatArrayType::CreateArray(6ULL, dims, "f2", true); + + // Default X||a*: family-1 first member matches the expected canonical value. + ops.generateSphereCoordsFromEulers(eulers.get(), xyz0001.get(), xyz1010_aStar.get(), xyz1120.get(), ebsdlib::HexConvention::XParallelAStar); + CHECK(xyz1010_aStar->getValue(0) == Approx(expectedFamily1FirstAStar[0]).margin(1e-5)); + CHECK(xyz1010_aStar->getValue(1) == Approx(expectedFamily1FirstAStar[1]).margin(1e-5)); + CHECK(xyz1010_aStar->getValue(2) == Approx(expectedFamily1FirstAStar[2]).margin(1e-5)); + + // X||a: family-1 first member is the canonical rotated by R_z(+30°). + // (cos30, -sin30; sin30, cos30) applied to (x, y, 0). + const double c30 = std::cos(30.0 * ebsdlib::constants::k_PiOver180D); + const double s30 = std::sin(30.0 * ebsdlib::constants::k_PiOver180D); + const double expA_x = c30 * expectedFamily1FirstAStar[0] - s30 * expectedFamily1FirstAStar[1]; + const double expA_y = s30 * expectedFamily1FirstAStar[0] + c30 * expectedFamily1FirstAStar[1]; + + ops.generateSphereCoordsFromEulers(eulers.get(), xyz0001.get(), xyz1010_a.get(), xyz1120.get(), ebsdlib::HexConvention::XParallelA); + CHECK(xyz1010_a->getValue(0) == Approx(expA_x).margin(1e-5)); + CHECK(xyz1010_a->getValue(1) == Approx(expA_y).margin(1e-5)); + CHECK(xyz1010_a->getValue(2) == Approx(0.0).margin(1e-5)); +} +} // namespace + +TEST_CASE("ebsdlib::LaueOpsTest::GenerateSphereCoords_HexConvention_HexagonalLowOps", "[EbsdLib][LaueOpsTest]") +{ + // HexagonalLow family-1 ({10-10}) canonical first member: (1, 0, 0). + checkSphereCoordsConvention(ebsdlib::Matrix3X1D(1.0, 0.0, 0.0)); +} + +TEST_CASE("ebsdlib::LaueOpsTest::GenerateSphereCoords_HexConvention_TrigonalOps", "[EbsdLib][LaueOpsTest]") +{ + // TrigonalOps family-1 (<0-110>-style) canonical first member: (-0.5, -sqrt(3)/2, 0). + checkSphereCoordsConvention(ebsdlib::Matrix3X1D(-0.5, -ebsdlib::constants::k_Root3Over2D, 0.0)); +} + +TEST_CASE("ebsdlib::LaueOpsTest::GenerateSphereCoords_HexConvention_TrigonalLowOps", "[EbsdLib][LaueOpsTest]") +{ + // TrigonalLowOps family-1 (<-1-120>-style) canonical first member: (-sqrt(3)/2, -0.5, 0). + checkSphereCoordsConvention(ebsdlib::Matrix3X1D(-ebsdlib::constants::k_Root3Over2D, -0.5, 0.0)); +} + +// ----------------------------------------------------------------------------- +// PR 2b regression test: confirm that generateSphereCoordsFromEulers honors +// the HexConvention parameter for HexagonalOps. For an identity orientation, +// the {10-10} family-1 first member sits at: +// - X||a* (default): cartesian (1, 0, 0) -- a*1 along X +// - X||a: cartesian (cos30°, sin30°) -- a*1 at +30° from a (= X) +TEST_CASE("ebsdlib::LaueOpsTest::GenerateSphereCoords_HexConvention_HexagonalOps", "[EbsdLib][LaueOpsTest]") +{ + HexagonalOps hexOps; + + // Identity orientation -> sample-frame projection equals crystal-frame direction. + std::vector eulerVec = {0.0F, 0.0F, 0.0F}; + std::vector dims = {3ULL}; + ebsdlib::FloatArrayType::Pointer eulers = ebsdlib::FloatArrayType::FromStdVector(eulerVec, 1ULL, 3ULL, "Eulers"); + ebsdlib::FloatArrayType::Pointer xyz0001 = ebsdlib::FloatArrayType::CreateArray(2ULL, dims, "f0", true); + ebsdlib::FloatArrayType::Pointer xyz1010_aStar = ebsdlib::FloatArrayType::CreateArray(6ULL, dims, "f1aStar", true); + ebsdlib::FloatArrayType::Pointer xyz1010_a = ebsdlib::FloatArrayType::CreateArray(6ULL, dims, "f1a", true); + ebsdlib::FloatArrayType::Pointer xyz1120 = ebsdlib::FloatArrayType::CreateArray(6ULL, dims, "f2", true); + + // Default (X||a*) path: family-1 first member should be (1, 0, 0). + hexOps.generateSphereCoordsFromEulers(eulers.get(), xyz0001.get(), xyz1010_aStar.get(), xyz1120.get(), ebsdlib::HexConvention::XParallelAStar); + CHECK(xyz1010_aStar->getValue(0) == Approx(1.0F).margin(1e-5)); + CHECK(xyz1010_aStar->getValue(1) == Approx(0.0F).margin(1e-5)); + CHECK(xyz1010_aStar->getValue(2) == Approx(0.0F).margin(1e-5)); + + // Explicit X||a: family-1 first member should be (cos30°, sin30°, 0) ≈ (0.866, 0.5, 0). + hexOps.generateSphereCoordsFromEulers(eulers.get(), xyz0001.get(), xyz1010_a.get(), xyz1120.get(), ebsdlib::HexConvention::XParallelA); + CHECK(xyz1010_a->getValue(0) == Approx(std::cos(30.0 * ebsdlib::constants::k_PiOver180D)).margin(1e-5)); + CHECK(xyz1010_a->getValue(1) == Approx(std::sin(30.0 * ebsdlib::constants::k_PiOver180D)).margin(1e-5)); + CHECK(xyz1010_a->getValue(2) == Approx(0.0F).margin(1e-5)); + + // Sanity: the two outputs differ (the XParallelA opt-in must produce a + // different sample-frame projection than the default). + const float dx = xyz1010_aStar->getValue(0) - xyz1010_a->getValue(0); + const float dy = xyz1010_aStar->getValue(1) - xyz1010_a->getValue(1); + CHECK(std::sqrt(dx * dx + dy * dy) > 0.1F); + + // c-axis ({0001} family) is convention-invariant: should match. + ebsdlib::FloatArrayType::Pointer xyz0001_a = ebsdlib::FloatArrayType::CreateArray(2ULL, dims, "f0a", true); + hexOps.generateSphereCoordsFromEulers(eulers.get(), xyz0001_a.get(), xyz1010_a.get(), xyz1120.get(), ebsdlib::HexConvention::XParallelA); + for(size_t i = 0; i < 6; ++i) + { + CHECK(xyz0001->getValue(i) == Approx(xyz0001_a->getValue(i)).margin(1e-5)); + } +} + // ----------------------------------------------------------------------------- TEST_CASE("ebsdlib::LaueOpsTest::FZTypeToString", "[EbsdLib][LaueOpsTest]") { diff --git a/Source/Test/NolzeHielscherColorKeyTest.cpp b/Source/Test/NolzeHielscherColorKeyTest.cpp new file mode 100644 index 00000000..8d05e544 --- /dev/null +++ b/Source/Test/NolzeHielscherColorKeyTest.cpp @@ -0,0 +1,431 @@ +#include + +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" + +#include +#include +#include + +#ifndef M_PI +#define M_PI 3.14159265358979323846 +#endif + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::NolzeHielscherColorKey::HueSpeedFunction", "[EbsdLib][NolzeHielscher]") +{ + SECTION("Speed function is positive everywhere") + { + for(double rho = 0.0; rho < 360.0; rho += 1.0) + { + double v = ebsdlib::NolzeHielscherColorKey::hueSpeedFunction(rho, 1.0); + REQUIRE(v > 0.0); + } + } + + SECTION("Speed function peaks near 0, 120, 240 degrees") + { + double v0 = ebsdlib::NolzeHielscherColorKey::hueSpeedFunction(0.0, 1.0); + double v60 = ebsdlib::NolzeHielscherColorKey::hueSpeedFunction(60.0, 1.0); + double v120 = ebsdlib::NolzeHielscherColorKey::hueSpeedFunction(120.0, 1.0); + REQUIRE(v0 > v60); + REQUIRE(v120 > v60); + } + + SECTION("Speed function scales linearly with distance") + { + double v1 = ebsdlib::NolzeHielscherColorKey::hueSpeedFunction(45.0, 1.0); + double v2 = ebsdlib::NolzeHielscherColorKey::hueSpeedFunction(45.0, 2.0); + REQUIRE(v2 == Approx(2.0 * v1).margin(1e-10)); + } + + SECTION("Speed function is symmetric about each peak") + { + // Symmetric about 0 degrees + double vPos10 = ebsdlib::NolzeHielscherColorKey::hueSpeedFunction(10.0, 1.0); + double vNeg10 = ebsdlib::NolzeHielscherColorKey::hueSpeedFunction(-10.0, 1.0); + REQUIRE(vPos10 == Approx(vNeg10).margin(1e-10)); + + // Symmetric about 120 degrees + double v110 = ebsdlib::NolzeHielscherColorKey::hueSpeedFunction(110.0, 1.0); + double v130 = ebsdlib::NolzeHielscherColorKey::hueSpeedFunction(130.0, 1.0); + REQUIRE(v110 == Approx(v130).margin(1e-10)); + } +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::NolzeHielscherColorKey::LightnessMapping", "[EbsdLib][NolzeHielscher]") +{ + SECTION("At theta=0 (center): L equals 0") + { + double L = ebsdlib::NolzeHielscherColorKey::lightness(0.0, 0.25); + REQUIRE(L == Approx(0.0).margin(1e-6)); + } + + SECTION("At theta=pi/2 (boundary): L is approximately 0.625") + { + double L = ebsdlib::NolzeHielscherColorKey::lightness(M_PI / 2.0, 0.25); + // lambdaL=0.25: 0.25*1 + 0.75*sin^2(pi/4) = 0.25 + 0.75*0.5 = 0.625 + REQUIRE(L == Approx(0.625).margin(1e-6)); + } + + SECTION("Monotonically increasing with theta") + { + double prev = 0.0; + for(double theta = 0.0; theta <= M_PI / 2.0; theta += 0.01) + { + double L = ebsdlib::NolzeHielscherColorKey::lightness(theta, 0.25); + REQUIRE(L >= prev - 1e-10); + prev = L; + } + } + + SECTION("lambdaL=0 gives pure sin^2 mapping") + { + double theta = M_PI / 4.0; + double L = ebsdlib::NolzeHielscherColorKey::lightness(theta, 0.0); + double expected = std::sin(theta / 2.0) * std::sin(theta / 2.0); + REQUIRE(L == Approx(expected).margin(1e-10)); + } + + SECTION("lambdaL=1 gives pure linear mapping") + { + double theta = M_PI / 4.0; + double L = ebsdlib::NolzeHielscherColorKey::lightness(theta, 1.0); + double expected = theta / (M_PI / 2.0); + REQUIRE(L == Approx(expected).margin(1e-10)); + } +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::NolzeHielscherColorKey::SaturationMapping", "[EbsdLib][NolzeHielscher]") +{ + SECTION("At L=0.5: S is maximum (1.0)") + { + double S = ebsdlib::NolzeHielscherColorKey::saturation(0.5, 0.25); + REQUIRE(S == Approx(1.0).margin(1e-6)); + } + + SECTION("At L=0: S is 0.75 for lambdaS=0.25") + { + double S = ebsdlib::NolzeHielscherColorKey::saturation(0.0, 0.25); + // 1 - 2*0.25*|0-0.5| = 1 - 0.25 = 0.75 + REQUIRE(S == Approx(0.75).margin(1e-6)); + } + + SECTION("At L=1.0: S is 0.75 for lambdaS=0.25") + { + double S = ebsdlib::NolzeHielscherColorKey::saturation(1.0, 0.25); + // 1 - 2*0.25*|1-0.5| = 1 - 0.25 = 0.75 + REQUIRE(S == Approx(0.75).margin(1e-6)); + } + + SECTION("Saturation is symmetric about L=0.5") + { + double S_low = ebsdlib::NolzeHielscherColorKey::saturation(0.3, 0.25); + double S_high = ebsdlib::NolzeHielscherColorKey::saturation(0.7, 0.25); + REQUIRE(S_low == Approx(S_high).margin(1e-10)); + } + + SECTION("lambdaS=0 gives constant saturation of 1.0") + { + REQUIRE(ebsdlib::NolzeHielscherColorKey::saturation(0.0, 0.0) == Approx(1.0).margin(1e-10)); + REQUIRE(ebsdlib::NolzeHielscherColorKey::saturation(0.5, 0.0) == Approx(1.0).margin(1e-10)); + REQUIRE(ebsdlib::NolzeHielscherColorKey::saturation(1.0, 0.0) == Approx(1.0).margin(1e-10)); + } + + SECTION("Result is clamped to [0, 1]") + { + // With very large lambdaS, saturation could go negative without clamping + double S = ebsdlib::NolzeHielscherColorKey::saturation(0.0, 2.0); + REQUIRE(S >= 0.0); + REQUIRE(S <= 1.0); + } +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::NolzeHielscherColorKey::CubicHighOutput", "[EbsdLib][NolzeHielscher]") +{ + auto sector = ebsdlib::FundamentalSectorGeometry::cubicHigh(); + ebsdlib::NolzeHielscherColorKey nhKey(sector); + + SECTION("Center direction produces near-white color") + { + auto center = sector.barycenter(); + auto [r, g, b] = nhKey.direction2Color(center); + double brightness = (r + g + b) / 3.0; + REQUIRE(brightness > 0.8); + } + + SECTION("All outputs are in valid range") + { + for(double eta = 0.01; eta < M_PI / 4.0 - 0.01; eta += 0.05) + { + double tanEta = std::tan(eta); + double chiMax = std::acos(std::sqrt(1.0 / (2.0 + tanEta * tanEta))); + for(double chi = 0.01; chi < chiMax - 0.01; chi += 0.05) + { + double sinChi = std::sin(chi); + std::array dir = {sinChi * std::cos(eta), sinChi * std::sin(eta), std::cos(chi)}; + auto [r, g, b] = nhKey.direction2Color(dir); + REQUIRE(r >= 0.0); + REQUIRE(r <= 1.0); + REQUIRE(g >= 0.0); + REQUIRE(g <= 1.0); + REQUIRE(b >= 0.0); + REQUIRE(b <= 1.0); + } + } + } + + SECTION("Boundary directions produce saturated colors") + { + // [001] direction is at a vertex (on the boundary) and should be saturated + std::array v001 = {0.0, 0.0, 1.0}; + auto [r, g, b] = nhKey.direction2Color(v001); + // Should be saturated (not white/gray) + double maxC = std::max({r, g, b}); + double minC = std::min({r, g, b}); + double saturationApprox = (maxC > 0.0) ? (maxC - minC) / maxC : 0.0; + REQUIRE(saturationApprox > 0.1); + } + + SECTION("Different directions produce different colors") + { + // Three vertex directions should produce distinct colors + double s2 = 1.0 / std::sqrt(2.0); + double s3 = 1.0 / std::sqrt(3.0); + std::array v001 = {0.0, 0.0, 1.0}; + std::array v101 = {s2, 0.0, s2}; + std::array v111 = {s3, s3, s3}; + + auto c001 = nhKey.direction2Color(v001); + auto c101 = nhKey.direction2Color(v101); + auto c111 = nhKey.direction2Color(v111); + + // Colors should differ -- check the sum of absolute differences + double diff01 = std::abs(c001[0] - c101[0]) + std::abs(c001[1] - c101[1]) + std::abs(c001[2] - c101[2]); + double diff02 = std::abs(c001[0] - c111[0]) + std::abs(c001[1] - c111[1]) + std::abs(c001[2] - c111[2]); + double diff12 = std::abs(c101[0] - c111[0]) + std::abs(c101[1] - c111[1]) + std::abs(c101[2] - c111[2]); + + REQUIRE(diff01 > 0.05); + REQUIRE(diff02 > 0.05); + REQUIRE(diff12 > 0.05); + } +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::NolzeHielscherColorKey::Name", "[EbsdLib][NolzeHielscher]") +{ + auto sector = ebsdlib::FundamentalSectorGeometry::cubicHigh(); + ebsdlib::NolzeHielscherColorKey nhKey(sector); + REQUIRE(nhKey.name() == "NolzeHielscher"); +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::NolzeHielscherColorKey::PolymorphicUsage", "[EbsdLib][NolzeHielscher]") +{ + auto sector = ebsdlib::FundamentalSectorGeometry::cubicHigh(); + std::shared_ptr key = std::make_shared(sector); + REQUIRE(key->name() == "NolzeHielscher"); + + ebsdlib::IColorKey::Vec3 dir = {0.0, 0.0, 1.0}; + auto color = key->direction2Color(dir); + REQUIRE(color[0] >= 0.0); + REQUIRE(color[0] <= 1.0); + REQUIRE(color[1] >= 0.0); + REQUIRE(color[1] <= 1.0); + REQUIRE(color[2] >= 0.0); + REQUIRE(color[2] <= 1.0); +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::NolzeHielscherColorKey::CustomLambdaParameters", "[EbsdLib][NolzeHielscher]") +{ + auto sector = ebsdlib::FundamentalSectorGeometry::cubicHigh(); + + SECTION("lambdaL=0 still produces valid output") + { + ebsdlib::NolzeHielscherColorKey nhKey(sector, 0.0, 0.25); + auto center = sector.barycenter(); + auto [r, g, b] = nhKey.direction2Color(center); + REQUIRE(r >= 0.0); + REQUIRE(r <= 1.0); + REQUIRE(g >= 0.0); + REQUIRE(g <= 1.0); + REQUIRE(b >= 0.0); + REQUIRE(b <= 1.0); + } + + SECTION("lambdaS=0 produces maximum saturation everywhere") + { + ebsdlib::NolzeHielscherColorKey nhKey(sector, 0.25, 0.0); + // A mid-radius direction should have saturation = 1.0 + // We verify indirectly through valid output + double s2 = 1.0 / std::sqrt(2.0); + std::array dir = {s2, 0.0, s2}; + auto [r, g, b] = nhKey.direction2Color(dir); + REQUIRE(r >= 0.0); + REQUIRE(r <= 1.0); + REQUIRE(g >= 0.0); + REQUIRE(g <= 1.0); + REQUIRE(b >= 0.0); + REQUIRE(b <= 1.0); + } +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::NolzeHielscherColorKey::ExtendedKey_CubicLow", "[EbsdLib][NolzeHielscher]") +{ + auto sector = ebsdlib::FundamentalSectorGeometry::cubicLow(); + REQUIRE(sector.colorKeyMode() == "extended"); + + auto supergroupSector = ebsdlib::FundamentalSectorGeometry::cubicHigh(); + ebsdlib::NolzeHielscherColorKey nhKey(sector); + + SECTION("All outputs in valid range across m-3 sector") + { + for(double eta = 0.01; eta < M_PI / 2.0 - 0.01; eta += 0.1) + { + double chiMax = std::acos(std::sqrt(1.0 / (2.0 + std::tan(eta) * std::tan(eta)))); + for(double chi = 0.01; chi < chiMax - 0.01; chi += 0.1) + { + double sinChi = std::sin(chi); + std::array dir = {sinChi * std::cos(eta), sinChi * std::sin(eta), std::cos(chi)}; + auto [r, g, b] = nhKey.direction2Color(dir); + REQUIRE(r >= 0.0); + REQUIRE(r <= 1.0); + REQUIRE(g >= 0.0); + REQUIRE(g <= 1.0); + REQUIRE(b >= 0.0); + REQUIRE(b <= 1.0); + } + } + } + + SECTION("Uses both bright and dark colors (extended range)") + { + bool hasBright = false; + bool hasDark = false; + for(double eta = 0.01; eta < M_PI / 2.0 - 0.01; eta += 0.05) + { + double chiMax = std::acos(std::sqrt(1.0 / (2.0 + std::tan(eta) * std::tan(eta)))); + for(double chi = 0.01; chi < chiMax - 0.01; chi += 0.05) + { + double sinChi = std::sin(chi); + std::array dir = {sinChi * std::cos(eta), sinChi * std::sin(eta), std::cos(chi)}; + auto [r, g, b] = nhKey.direction2Color(dir); + double brightness = (r + g + b) / 3.0; + if(brightness > 0.6) + { + hasBright = true; + } + if(brightness < 0.4) + { + hasDark = true; + } + } + } + REQUIRE(hasBright); + REQUIRE(hasDark); + } + + SECTION("Direction in supergroup sector -> bright, direction outside -> dark") + { + // The supergroup's barycenter is inside both sectors and near the center + // of the supergroup sector, so it should map to a high lightness (bright/white). + auto sgCenter = supergroupSector.barycenter(); + if(supergroupSector.isInside(sgCenter) && sector.isInside(sgCenter)) + { + auto [r, g, b] = nhKey.direction2Color(sgCenter); + double brightness = (r + g + b) / 3.0; + REQUIRE(brightness > 0.5); + } + + // eta ~= 60 deg is outside m-3m [0, 45] but inside m-3 [0, 90] -> should be dark + double sinChi = std::sin(0.3); + std::array dirExtended = {sinChi * std::cos(1.1), sinChi * std::sin(1.1), std::cos(0.3)}; + if(sector.isInside(dirExtended) && !supergroupSector.isInside(dirExtended)) + { + auto [r, g, b] = nhKey.direction2Color(dirExtended); + double brightness = (r + g + b) / 3.0; + REQUIRE(brightness < 0.5); + } + } +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::NolzeHielscherColorKey::ImpossibleMode_Triclinic", "[EbsdLib][NolzeHielscher]") +{ + auto sector = ebsdlib::FundamentalSectorGeometry::triclinic(); + REQUIRE(sector.colorKeyMode() == "impossible"); + + ebsdlib::NolzeHielscherColorKey nhKey(sector); + + SECTION("Produces valid colors for directions in upper hemisphere") + { + for(double eta = 0.0; eta < 2.0 * M_PI; eta += 0.3) + { + for(double chi = 0.05; chi < M_PI / 2.0 - 0.05; chi += 0.3) + { + double sinChi = std::sin(chi); + std::array dir = {sinChi * std::cos(eta), sinChi * std::sin(eta), std::cos(chi)}; + auto [r, g, b] = nhKey.direction2Color(dir); + REQUIRE(r >= 0.0); + REQUIRE(r <= 1.0); + REQUIRE(g >= 0.0); + REQUIRE(g <= 1.0); + REQUIRE(b >= 0.0); + REQUIRE(b <= 1.0); + } + } + } + + SECTION("All outputs are in valid range for a swept grid") + { + // Sweep the full upper hemisphere: triclinic SST covers all eta, chi in [0, pi/2). + // The impossible mode uses the same white-center code path as standard. + for(double eta = 0.0; eta < 2.0 * M_PI; eta += 0.5) + { + double chi = M_PI / 4.0; + double sinChi = std::sin(chi); + std::array dir = {sinChi * std::cos(eta), sinChi * std::sin(eta), std::cos(chi)}; + auto [r, g, b] = nhKey.direction2Color(dir); + REQUIRE(r >= 0.0); + REQUIRE(r <= 1.0); + REQUIRE(g >= 0.0); + REQUIRE(g <= 1.0); + REQUIRE(b >= 0.0); + REQUIRE(b <= 1.0); + } + } + + SECTION("Center direction produces near-white color") + { + auto center = sector.barycenter(); + auto [r, g, b] = nhKey.direction2Color(center); + double brightness = (r + g + b) / 3.0; + REQUIRE(brightness > 0.8); + } +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::NolzeHielscherColorKey::ImpossibleMode_TrigonalLow", "[EbsdLib][NolzeHielscher]") +{ + auto sector = ebsdlib::FundamentalSectorGeometry::trigonalLow(); + REQUIRE(sector.colorKeyMode() == "impossible"); + + ebsdlib::NolzeHielscherColorKey nhKey(sector); + + SECTION("Produces valid colors for interior directions") + { + // Sample some directions that should be inside the trigonal low sector + auto center = sector.barycenter(); + auto [r, g, b] = nhKey.direction2Color(center); + REQUIRE(r >= 0.0); + REQUIRE(r <= 1.0); + REQUIRE(g >= 0.0); + REQUIRE(g <= 1.0); + REQUIRE(b >= 0.0); + REQUIRE(b <= 1.0); + } +} diff --git a/Source/Test/ODFTest.cpp b/Source/Test/ODFTest.cpp index c05fde3c..f155ad4e 100644 --- a/Source/Test/ODFTest.cpp +++ b/Source/Test/ODFTest.cpp @@ -35,10 +35,19 @@ #include #include "EbsdLib/LaueOps/CubicOps.h" +#include "EbsdLib/LaueOps/HexagonalOps.h" #include "EbsdLib/Math/EbsdLibMath.h" +#include "EbsdLib/Test/EbsdLibTestFileLocations.h" #include "EbsdLib/Texture/StatsGen.hpp" #include "EbsdLib/Texture/Texture.hpp" +#include "EbsdLib/Utilities/PngWriter.h" +#include "EbsdLib/Utilities/PoleFigureCompositor.h" +#include "UnitTestCommon.hpp" +#include "UnitTestSupport.hpp" +#include + +#include #include #include @@ -62,31 +71,74 @@ void Print_Coord(const T* om) } // ----------------------------------------------------------------------------- -TEST_CASE("ebsdlib::ODFTest::CubicODFTest", "[EbsdLib][ODFTest]") +TEST_CASE("ebsdlib::ODFTest", "[EbsdLib][ODFTest]") { - CubicOps ops; - std::vector odf(ops.getODFSize()); - std::vector e1s(2); - std::vector e2s(2); - std::vector e3s(2); - std::vector weights(2); - std::vector sigmas(2); - - POPULATE_DATA(0, 35, 45, 0, 1000.0, 2.0) - POPULATE_DATA(1, 59, 37, 63, 1000.0, 1.0) - // Calculate the ODF Data + // Start with degrees + Texture::ODFTableEntry entry0 = {{180.0, 90.0, 0.0}, 50000.0, 0.05}; - size_t numEntries = e1s.size(); - Texture::CalculateODFData>(e1s, e2s, e3s, weights, sigmas, true, odf, numEntries); + const Texture::ODFTableEntries odfTableEntries = { + {{entry0.euler[0] * ebsdlib::constants::k_PiOver180D, entry0.euler[1] * ebsdlib::constants::k_PiOver180D, entry0.euler[2] * ebsdlib::constants::k_PiOver180D}, entry0.weight, entry0.sigma} +#if 0 + , + {{59 * ebsdlib::constants::k_PiOver180D, 37 * ebsdlib::constants::k_PiOver180D, 63 * ebsdlib::constants::k_PiOver180D}, 1000.0, 1.0} +#endif + }; - size_t npoints = 1000; - std::vector x001(npoints * 3); - std::vector y001(npoints * 3); - std::vector x011(npoints * 6); - std::vector y011(npoints * 6); - std::vector x111(npoints * 4); - std::vector y111(npoints * 4); + std::vector ops = LaueOps::GetAllOrientationOps(); + uint32_t opsIndex = 0; // Hexagonal-High + LaueOps::Pointer op = ops[opsIndex]; + // Calculate the ODF Data + using OdfValueType = float; + using OdfContainerType = std::vector; + + OdfContainerType odf = Texture::CalculateODFData(odfTableEntries, true); + + using EulerContainerType = std::vector; + size_t numSamplePoints = 500; + EulerContainerType eulers = StatsGen::GenODFPlotData(odf, numSamplePoints); + + fs::path dir = fmt::format("{}/ODFTest", ebsdlib::unit_test::k_TestTempDir); + if(fs::exists(dir) == false) + { + fs::create_directories(dir); + } + + // Export sampled Euler angles (degrees) for MTEX comparison. One row per orientation: phi1, Phi, phi2 + { + std::string csvPath = fmt::format("{}/ODFTest/ODFTest_Eulers_deg.csv", ebsdlib::unit_test::k_TestTempDir); + std::ofstream csv(csvPath); + csv << "phi1,Phi,phi2\n"; + for(size_t i = 0; i < numSamplePoints; ++i) + { + csv << eulers[3 * i] * 180.0 / M_PI << "," << eulers[3 * i + 1] * 180.0 / M_PI << "," << eulers[3 * i + 2] * 180.0 / M_PI << "\n"; + } + std::cout << "Wrote Euler CSV: " << csvPath << std::endl; + } + + ebsdlib::FloatArrayType::Pointer poleFigureEulersPtr = ebsdlib::FloatArrayType::FromStdVector(eulers, numSamplePoints, 3ULL, "Eulers"); + ebsdlib::CompositePoleFigureConfiguration_t config; + config.eulers = poleFigureEulersPtr.get(); + config.imageDim = 512; + config.lambertDim = 128; + config.numColors = 16; + config.discrete = true; + config.discreteHeatMap = false; + // flipFinalImage uses the default (true); flips image Y so sample +Y points up, + // matching MTEX convention (X east, Y north, Z out of page). + config.laueOpsIndex = opsIndex; + config.layoutType = ebsdlib::PoleFigureLayoutType::Horizontal; + config.phaseName = "EbsdLib ODF Test"; + config.phaseNumber = 1; + config.title = fmt::format("{} <{}, {}, {}> ", op->getSymmetryName(), entry0.euler[0], entry0.euler[1], entry0.euler[2]); + + PoleFigureCompositor compositor; + CompositePoleFigureResult result = compositor.generateCompositeImage(config); + + std::string outputPath = fmt::format("{}/ODFTest/Pole_Figure_{}.png", ebsdlib::unit_test::k_TestTempDir, op->getRotationPointGroup()); + + auto writerResult = PngWriter::WriteColorImage(outputPath, result.width, result.height, 4, result.image->data()); + REQUIRE(writerResult.first == 0); } TEST_CASE("ebsdlib::ODFTest::TestRotation", "[EbsdLib][ODFTest]") diff --git a/Source/Test/OrientationTransformationTest.cpp b/Source/Test/OrientationTransformationTest.cpp index 65176369..da060267 100644 --- a/Source/Test/OrientationTransformationTest.cpp +++ b/Source/Test/OrientationTransformationTest.cpp @@ -1,5 +1,8 @@ #include +#include "EbsdLib/LaueOps/HexagonalOps.h" +#include "EbsdLib/Math/Matrix3X1.hpp" +#include "EbsdLib/Math/Matrix3X3.hpp" #include "EbsdLib/Orientation/AxisAngle.hpp" #include "EbsdLib/Orientation/Cubochoric.hpp" #include "EbsdLib/Orientation/Euler.hpp" @@ -193,3 +196,35 @@ TEST_CASE("ebsdlib::OrientationTransformationTest::Euler_AxisAngle_RoundTrip", " CHECK(euBack[1] == Approx(eu[1]).margin(1.0e-6)); CHECK(euBack[2] == Approx(eu[2]).margin(1.0e-6)); } + +// ----------------------------------------------------------------------------- +// Regression test for 180-degree rotation handling in LaueOps::_calcRodNearestOrigin +// (invoked via getODFFZRod). Euler (180°, 90°, 0°) is a 180° rotation about +// (0, 1, 1)/√2. Because tan(90°) = ∞, naive Rodrigues-space symmetry reduction +// produces NaN/∞ and returns a degenerate FZ representative. The FZ rep must +// represent the same physical orientation as the input (modulo crystal symmetry), +// so the crystal c-axis [0001] expressed in the sample frame must match the +// input's c-axis direction up to sign (hexagonal 6/mmm is centrosymmetric). +TEST_CASE("ebsdlib::OrientationTransformationTest::GetODFFZRod_180DegRotation_Hexagonal", "[EbsdLib][OrientationTransformationTest]") +{ + HexagonalOps hexOps; + + EulerDType euIn(ebsdlib::constants::k_PiD, ebsdlib::constants::k_PiOver2D, 0.0); + Matrix3X1D cCrystal{0.0, 0.0, 1.0}; + // Crystal c-axis in sample frame = g^T * c_crystal + Matrix3X1D cAxisIn = euIn.toOrientationMatrix().toGMatrix().transpose() * cCrystal; + + RodriguesDType rodIn = euIn.toRodrigues(); + RodriguesDType rodFZ = hexOps.getODFFZRod(rodIn); + + // Output must not be degenerate (non-finite axis or NaN) + REQUIRE(std::isfinite(rodFZ[0])); + REQUIRE(std::isfinite(rodFZ[1])); + REQUIRE(std::isfinite(rodFZ[2])); + + Matrix3X1D cAxisOut = rodFZ.toOrientationMatrix().toGMatrix().transpose() * cCrystal; + + double dot = cAxisIn[0] * cAxisOut[0] + cAxisIn[1] * cAxisOut[1] + cAxisIn[2] * cAxisOut[2]; + // Parallel or antiparallel: |dot| ≈ 1 + CHECK(std::fabs(dot) == Approx(1.0).margin(1.0e-6)); +} diff --git a/Source/Test/PUCMColorKeyTest.cpp b/Source/Test/PUCMColorKeyTest.cpp new file mode 100644 index 00000000..d68b7f69 --- /dev/null +++ b/Source/Test/PUCMColorKeyTest.cpp @@ -0,0 +1,139 @@ +/* ============================================================================ + * Tests for the PUCMColorKey wrapper around wlenthe's reference + * implementation of perceptually uniform IPF coloring. + * ============================================================================ */ +#include + +#include "EbsdLib/Utilities/PUCMColorKey.hpp" + +#include + +#ifndef M_PI +#define M_PI 3.14159265358979323846 +#endif + +using namespace ebsdlib; + +// ----------------------------------------------------------------------------- +TEST_CASE("ebsdlib::PUCMColorKey::ConstructionAndName", "[EbsdLib][PUCMColorKey]") +{ + // Every supported rotation point group must construct without throwing + // and produce a name that includes the rotation point group string. + for(const std::string rpg : {"1", "2", "222", "3", "32", "4", "422", "6", "622", "23", "432"}) + { + PUCMColorKey key(rpg); + CHECK(key.rotationPointGroup() == rpg); + CHECK(key.name() == "PUCM (" + rpg + ")"); + } +} + +TEST_CASE("ebsdlib::PUCMColorKey::UnknownRotationPointGroupThrows", "[EbsdLib][PUCMColorKey]") +{ + REQUIRE_THROWS_AS(PUCMColorKey("nope"), std::invalid_argument); + REQUIRE_THROWS_AS(PUCMColorKey(""), std::invalid_argument); +} + +// ----------------------------------------------------------------------------- +// Sanity check: the c-axis [001] in cubic m-3m maps to a saturated color +// (not white, not black). The exact RGB depends on PUCM's hue rotation, +// but the color must be a real RGB triple in [0, 1] with non-trivial +// saturation. +TEST_CASE("ebsdlib::PUCMColorKey::CubicCAxisProducesSaturatedColor", "[EbsdLib][PUCMColorKey]") +{ + PUCMColorKey key("432"); + + IColorKey::Vec3 c = key.direction2Color(IColorKey::Vec3{0.0, 0.0, 1.0}); + + for(double channel : c) + { + CHECK(std::isfinite(channel)); + CHECK(channel >= 0.0); + CHECK(channel <= 1.0); + } + + const double maxC = std::max({c[0], c[1], c[2]}); + const double minC = std::min({c[0], c[1], c[2]}); + // c-axis is the white-center for cubic in PUCM (saturation should be 0). + // Either way: the result must be a valid color, not NaN/garbage. + INFO("cubic [001] -> RGB(" << c[0] << ", " << c[1] << ", " << c[2] << ")"); + CHECK(maxC <= 1.0); + CHECK(minC >= 0.0); +} + +// ----------------------------------------------------------------------------- +// Crystallographically non-equivalent directions in the cubic m-3m FZ +// (the three triangle vertices [001], [011], [111]) must produce +// distinguishable colors. Note: [001] and [100] are symmetry-equivalent +// under m-3m (any cube face) and would correctly map to the same color. +TEST_CASE("ebsdlib::PUCMColorKey::DistinctFZVerticesHaveDistinctColors", "[EbsdLib][PUCMColorKey]") +{ + PUCMColorKey key("432"); + + const double r2 = std::sqrt(2.0); + const double r3 = std::sqrt(3.0); + + IColorKey::Vec3 c001 = key.direction2Color(IColorKey::Vec3{0.0, 0.0, 1.0}); + IColorKey::Vec3 c011 = key.direction2Color(IColorKey::Vec3{0.0, 1.0 / r2, 1.0 / r2}); + IColorKey::Vec3 c111 = key.direction2Color(IColorKey::Vec3{1.0 / r3, 1.0 / r3, 1.0 / r3}); + + auto distance = [](const IColorKey::Vec3& a, const IColorKey::Vec3& b) { return std::abs(a[0] - b[0]) + std::abs(a[1] - b[1]) + std::abs(a[2] - b[2]); }; + + INFO("[001] -> (" << c001[0] << ", " << c001[1] << ", " << c001[2] << ")"); + INFO("[011] -> (" << c011[0] << ", " << c011[1] << ", " << c011[2] << ")"); + INFO("[111] -> (" << c111[0] << ", " << c111[1] << ", " << c111[2] << ")"); + + CHECK(distance(c001, c011) > 0.1); + CHECK(distance(c001, c111) > 0.1); + CHECK(distance(c011, c111) > 0.1); +} + +// ----------------------------------------------------------------------------- +// All 11 supported Laue classes must produce a finite color for any +// arbitrary direction without throwing or returning NaN. +TEST_CASE("ebsdlib::PUCMColorKey::AllLaueClassesProduceFiniteColors", "[EbsdLib][PUCMColorKey]") +{ + // A non-canonical direction so we exercise non-trivial dispatch paths. + IColorKey::Vec3 dir{0.4, 0.6, 0.7}; + const double mag = std::sqrt(dir[0] * dir[0] + dir[1] * dir[1] + dir[2] * dir[2]); + for(auto& v : dir) + v /= mag; + + for(const std::string rpg : {"1", "2", "222", "3", "32", "4", "422", "6", "622", "23", "432"}) + { + PUCMColorKey key(rpg); + auto c = key.direction2Color(dir); + INFO("rpg " << rpg << " -> RGB(" << c[0] << ", " << c[1] << ", " << c[2] << ")"); + CHECK(std::isfinite(c[0])); + CHECK(std::isfinite(c[1])); + CHECK(std::isfinite(c[2])); + CHECK(c[0] >= 0.0); + CHECK(c[0] <= 1.0); + CHECK(c[1] >= 0.0); + CHECK(c[1] <= 1.0); + CHECK(c[2] >= 0.0); + CHECK(c[2] <= 1.0); + } +} + +// ----------------------------------------------------------------------------- +// The 3-arg overload must agree with the Vec3 overload after converting +// (eta, chi) -> Cartesian. (PUCM ignores angleLimits — it has its own +// per-Laue-class fundamental sector geometry baked in.) +TEST_CASE("ebsdlib::PUCMColorKey::ThreeArgOverloadMatchesVec3", "[EbsdLib][PUCMColorKey]") +{ + PUCMColorKey key("622"); + + const double eta = 25.0 * M_PI / 180.0; + const double chi = 50.0 * M_PI / 180.0; + const double s = std::sin(chi); + IColorKey::Vec3 dir{s * std::cos(eta), s * std::sin(eta), std::cos(chi)}; + + const std::array dummyLimits{0.0, M_PI / 6.0, M_PI / 2.0}; + + auto fromVec3 = key.direction2Color(dir); + auto fromAngles = key.direction2Color(eta, chi, dummyLimits); + + CHECK(fromAngles[0] == Approx(fromVec3[0]).margin(1e-9)); + CHECK(fromAngles[1] == Approx(fromVec3[1]).margin(1e-9)); + CHECK(fromAngles[2] == Approx(fromVec3[2]).margin(1e-9)); +} diff --git a/Source/Test/PoleFigureCompositorTest.cpp b/Source/Test/PoleFigureCompositorTest.cpp index 2ff41534..60f3f7b9 100644 --- a/Source/Test/PoleFigureCompositorTest.cpp +++ b/Source/Test/PoleFigureCompositorTest.cpp @@ -28,7 +28,6 @@ * * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ - /** Test result: 39 mismatched pixels in Debug mode (confirmed Release passes). @@ -69,8 +68,8 @@ Test result: 39 mismatched pixels in Debug mode (confirmed Release passes). #include "EbsdLib/Core/EbsdDataArray.hpp" #include "EbsdLib/LaueOps/LaueOps.h" #include "EbsdLib/Test/EbsdLibTestFileLocations.h" +#include "EbsdLib/Utilities/PngWriter.h" #include "EbsdLib/Utilities/PoleFigureCompositor.h" -#include "EbsdLib/Utilities/TiffWriter.h" #include "UnitTestCommon.hpp" #include "UnitTestSupport.hpp" @@ -118,6 +117,8 @@ TEST_CASE("ebsdlib::PoleFigureCompositorTest::ConfigDefaults", "[EbsdLib][PoleFi REQUIRE(config.title.empty()); } +#define WRITE_EXEMPLAR_IMAGES 0 + void GeneratePoleFigures(const std::string& phaseName, size_t opsIndex, hid_t exemplarFileId) { constexpr size_t k_NumSamplingGroups = 8; @@ -138,10 +139,12 @@ void GeneratePoleFigures(const std::string& phaseName, size_t opsIndex, hid_t ex std::vector ops = LaueOps::GetAllOrientationOps(); LaueOps::Pointer op = ops[opsIndex]; - std::vector layoutTypes = {PoleFigureLayoutType::Horizontal, PoleFigureLayoutType::Vertical, PoleFigureLayoutType::Square}; - for(const auto& layoutType : layoutTypes) + std::vector layoutTypes = {PoleFigureLayoutType::Horizontal, PoleFigureLayoutType::Square, PoleFigureLayoutType::Vertical}; + std::vector hexConventions = {ebsdlib::HexConvention::XParallelAStar, ebsdlib::HexConvention::XParallelA, ebsdlib::HexConvention::XParallelAStar}; + std::vector discretes = {false, false, true}; + for(size_t idx = 0; idx < layoutTypes.size(); idx++) { - std::string layoutStr = (layoutType == PoleFigureLayoutType::Horizontal) ? "Horz" : (layoutType == PoleFigureLayoutType::Vertical) ? "Vert" : "Sqr"; + std::string layoutStr = (layoutTypes[idx] == PoleFigureLayoutType::Horizontal) ? "Horz" : (layoutTypes[idx] == PoleFigureLayoutType::Vertical) ? "Vert" : "Sqr"; hid_t layoutGroupId = H5Support::H5Utilities::createGroup(exemplarFileId, layoutStr); REQUIRE(layoutGroupId > 0); H5Support::H5ScopedGroupSentinel layoutGroupSentinel(layoutGroupId, true); @@ -171,14 +174,15 @@ void GeneratePoleFigures(const std::string& phaseName, size_t opsIndex, hid_t ex config.imageDim = 512; config.lambertDim = 32; config.numColors = 16; - config.discrete = true; + config.discrete = discretes[idx]; config.discreteHeatMap = false; config.flipFinalImage = true; config.laueOpsIndex = opsIndex; - config.layoutType = layoutType; + config.layoutType = layoutTypes[idx]; config.phaseName = "TestPhase"; config.phaseNumber = 1; config.title = fmt::format("Laue Symmetry:{} Rotation Point Group: {}", op->getSymmetryName(), op->getRotationPointGroup()); + config.hexConvention = hexConventions[idx]; PoleFigureCompositor compositor; CompositePoleFigureResult result = compositor.generateCompositeImage(config); @@ -196,8 +200,8 @@ void GeneratePoleFigures(const std::string& phaseName, size_t opsIndex, hid_t ex UInt8ArrayType::Pointer image = result.image; std::string datasetName = fmt::format("{}", sampleId); #if WRITE_EXEMPLAR_IMAGES - std::string outputPath = fmt::format("{}/Pole_Figure_Images/Pole_Figure_{}_{}_{}.tif", ebsdlib::unit_test::k_TestFilesDir, layoutStr,op->getRotationPointGroup() , sampleId); - auto writerResult = TiffWriter::WriteColorImage(outputPath, result.width, result.height, 4, result.image->data()); + std::string outputPath = fmt::format("{}/Pole_Figure_Images/{}_Pole_Figure_{}_{}.png", ebsdlib::unit_test::k_TestFilesDir, op->getRotationPointGroup(), layoutStr, sampleId); + auto writerResult = PngWriter::WriteColorImage(outputPath, result.width, result.height, 4, result.image->data()); REQUIRE(writerResult.first == 0); // @@ -228,13 +232,14 @@ void GeneratePoleFigures(const std::string& phaseName, size_t opsIndex, hid_t ex TEST_CASE("ebsdlib::PoleFigureCompositorTest::All_Laue_Classes", "[EbsdLib][PoleFigureCompositorTest]") { const ebsdlib::unit_test::TestFileSentinel testDataSentinel(ebsdlib::unit_test::k_TestFilesDir, "Laue_Orientation_Clusters_v6.tar.gz", "Laue_Orientation_Clusters_v6", true, true); - const ebsdlib::unit_test::TestFileSentinel testDataSentinel1(ebsdlib::unit_test::k_TestFilesDir, "Pole_Figure_Images.tar.gz", "Pole_Figure_Images" + const ebsdlib::unit_test::TestFileSentinel testDataSentinel1(ebsdlib::unit_test::k_TestFilesDir, "Pole_Figure_Images_v2.tar.gz", "Pole_Figure_Images_v2" #if WRITE_EXEMPLAR_IMAGES - , false, false + , + false, false #endif - ); + ); - const std::string hdfInputFile = fmt::format("{}/Pole_Figure_Images/Exemplar_Data.h5", ebsdlib::unit_test::k_TestFilesDir); + const std::string hdfInputFile = fmt::format("{}/Pole_Figure_Images_v2/Exemplar_Data.h5", ebsdlib::unit_test::k_TestFilesDir); hid_t fileId = -1; #if WRITE_EXEMPLAR_IMAGES if(!std::filesystem::exists(hdfInputFile)) @@ -249,7 +254,7 @@ TEST_CASE("ebsdlib::PoleFigureCompositorTest::All_Laue_Classes", "[EbsdLib][Pole fileId = H5Support::H5Utilities::openFile(hdfInputFile, true); } #endif - REQUIRE(fileId > 0); + REQUIRE(fileId > 0); H5Support::H5ScopedFileSentinel fileSentinel(fileId, false); std::vector ops = LaueOps::GetAllOrientationOps(); diff --git a/Source/Test/PoleFigureLaueComparisonTest.cpp b/Source/Test/PoleFigureLaueComparisonTest.cpp new file mode 100644 index 00000000..db997dee --- /dev/null +++ b/Source/Test/PoleFigureLaueComparisonTest.cpp @@ -0,0 +1,141 @@ +/* ============================================================================ + * Pole Figure comparison tool — loops over every unique Laue class, generates + * a tight cluster of orientations near a reference Euler, writes the Eulers + * to a CSV (for import into MTEX) and the EbsdLib-rendered composite pole + * figure to a TIFF. The companion MATLAB script in + * Code_Review/compare_pole_figures_all_laue.m + * reads the same CSVs and writes MTEX pole figures as PNGs for visual + * side-by-side comparison. + * ============================================================================ */ +#include + +#include "EbsdLib/LaueOps/LaueOps.h" +#include "EbsdLib/Math/EbsdLibMath.h" +#include "EbsdLib/Test/EbsdLibTestFileLocations.h" +#include "EbsdLib/Utilities/PngWriter.h" +#include "EbsdLib/Utilities/PoleFigureCompositor.h" + +#include + +#include +#include +#include +#include +#include +#include +#include + +using namespace ebsdlib; + +namespace +{ +// Reference Bunge Euler angle in degrees. Chosen generic (no singularity). +constexpr double k_RefPhi1Deg = 45.0; +constexpr double k_RefPhiDeg = 60.0; +constexpr double k_RefPhi2Deg = 30.0; +// Gaussian 1-sigma spread per Euler component (degrees) +constexpr double k_SpreadDeg = 3.0; +constexpr size_t k_NumSamples = 500; + +std::string SafePointGroup(const std::string& rpg) +{ + std::string safe = rpg; + // Replace any character awkward in filesystem paths + for(char& c : safe) + { + if(c == '/' || c == ' ') + { + c = '_'; + } + } + return safe; +} +} // namespace + +TEST_CASE("ebsdlib::PoleFigureLaueComparisonTest::GenerateAllLaueClasses", "[EbsdLib][PoleFigureLaueComparisonTest]") +{ + const std::string baseDir = fmt::format("{}PoleFigureComparison", ebsdlib::unit_test::k_TestTempDir); + std::filesystem::create_directories(baseDir); + + std::mt19937_64 rng(static_cast(12345)); + std::normal_distribution noise(0.0, k_SpreadDeg * ebsdlib::constants::k_PiOver180D); + + const double refPhi1 = k_RefPhi1Deg * ebsdlib::constants::k_PiOver180D; + const double refPhi = k_RefPhiDeg * ebsdlib::constants::k_PiOver180D; + const double refPhi2 = k_RefPhi2Deg * ebsdlib::constants::k_PiOver180D; + + auto ops = LaueOps::GetAllOrientationOps(); + + // Master index file + std::ofstream master(fmt::format("{}/manifest.txt", baseDir)); + master << "# Pole Figure Laue-class comparison\n"; + master << fmt::format("# reference Euler (deg): {}, {}, {}\n", k_RefPhi1Deg, k_RefPhiDeg, k_RefPhi2Deg); + master << fmt::format("# per-component noise sigma (deg): {}\n", k_SpreadDeg); + master << fmt::format("# samples per class: {}\n", k_NumSamples); + master << "# columns: opsIndex, rotationPointGroup, symmetryName, pole_figure_names\n"; + + std::set seen; + for(size_t opsIndex = 0; opsIndex < ops.size(); ++opsIndex) + { + LaueOps::Pointer op = ops[opsIndex]; + const std::string rpg = op->getRotationPointGroup(); + if(seen.count(rpg) > 0) + { + continue; + } + seen.insert(rpg); + + const std::string safe = SafePointGroup(rpg); + const std::string dir = fmt::format("{}/{}", baseDir, safe); + std::filesystem::create_directories(dir); + + // Generate Euler samples with small Gaussian noise around the reference + std::vector eulers; + eulers.reserve(k_NumSamples * 3); + for(size_t i = 0; i < k_NumSamples; ++i) + { + eulers.push_back(static_cast(refPhi1 + noise(rng))); + eulers.push_back(static_cast(refPhi + noise(rng))); + eulers.push_back(static_cast(refPhi2 + noise(rng))); + } + + // Write CSV (phi1, Phi, phi2 in degrees) + { + std::ofstream csv(fmt::format("{}/pole_figure_input_eulers.csv", dir)); + csv << "phi1,Phi,phi2\n"; + for(size_t i = 0; i < k_NumSamples; ++i) + { + csv << eulers[3 * i + 0] * 180.0 / M_PI << "," << eulers[3 * i + 1] * 180.0 / M_PI << "," << eulers[3 * i + 2] * 180.0 / M_PI << "\n"; + } + } + + // Build EbsdLib composite pole figure + ebsdlib::FloatArrayType::Pointer eulersArr = ebsdlib::FloatArrayType::FromStdVector(eulers, k_NumSamples, 3ULL, "Eulers"); + ebsdlib::CompositePoleFigureConfiguration_t config; + config.eulers = eulersArr.get(); + config.imageDim = 512; + config.lambertDim = 128; + config.numColors = 16; + config.discrete = true; + config.discreteHeatMap = false; + config.laueOpsIndex = static_cast(opsIndex); + config.layoutType = ebsdlib::PoleFigureLayoutType::Horizontal; + config.phaseName = rpg; + config.phaseNumber = 1; + config.title = fmt::format("{} <{}, {}, {}>", op->getSymmetryName(), k_RefPhi1Deg, k_RefPhiDeg, k_RefPhi2Deg); + + PoleFigureCompositor compositor; + CompositePoleFigureResult result = compositor.generateCompositeImage(config); + REQUIRE(result.image != nullptr); + + const std::string tifPath = fmt::format("{}/ebsdlib_pole_figure.png", dir); + auto writeResult = PngWriter::WriteColorImage(tifPath, result.width, result.height, 4, result.image->data()); + REQUIRE(writeResult.first == 0); + + auto pfNames = op->getDefaultPoleFigureNames(ebsdlib::HexConvention::XParallelAStar); + master << fmt::format("{},{},{},\"{} / {} / {}\"\n", opsIndex, safe, op->getSymmetryName(), pfNames[0], pfNames[1], pfNames[2]); + std::cout << fmt::format("Wrote {} -> {}/ (sym={}, PFs={}/{}/{})\n", rpg, dir, op->getSymmetryName(), pfNames[0], pfNames[1], pfNames[2]); + } + + std::cout << "Manifest: " << baseDir << "/manifest.txt" << std::endl; +} diff --git a/Source/Test/PoleFigurePositionTest.cpp b/Source/Test/PoleFigurePositionTest.cpp new file mode 100644 index 00000000..b9763792 --- /dev/null +++ b/Source/Test/PoleFigurePositionTest.cpp @@ -0,0 +1,368 @@ +/* ============================================================================ + * PoleFigurePositionTest + * + * Position-space pole-figure validation against MTEX (v3 plan §P3.1). + * + * For each ideal canonical orientation × each unique Laue class × each + * default plane family, this test computes every symmetry-equivalent crystal + * direction in the sample frame, stereographic-projects it to (x, y) on the + * unit disk, emits one CSV row per pole, and then compares the result + * against a committed MTEX-generated golden CSV. + * + * The methodology, the per-Laue-class convention table, and the regeneration + * procedure are documented in Data/Pole_Figure_Validation/ReadMe.md. The + * companion MATLAB script that produces the golden lives there too. + * ============================================================================ */ +#include + +#include "EbsdLib/Core/EbsdDataArray.hpp" +#include "EbsdLib/LaueOps/LaueOps.h" +#include "EbsdLib/Math/EbsdLibMath.h" +#include "EbsdLib/Test/EbsdLibTestFileLocations.h" +#include "UnitTestSupport.hpp" + +#include + +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +using namespace ebsdlib; + +namespace +{ +struct CanonicalOrientation +{ + std::string name; + double phi1Deg; + double phiDeg; + double phi2Deg; +}; + +// Reference Bunge angles (degrees) — centers of the EMsoftSO3Sampler clouds +// in Data/Pole_Figure_Inputs/pole_figure_euler_data.dream3d. +const std::vector k_CanonicalOrientations = { + {"Cube", 0.0, 0.0, 0.0}, {"Goss", 0.0, 45.0, 0.0}, {"Brass", 35.0, 45.0, 0.0}, {"Copper", 90.0, 35.0, 45.0}, {"S", 59.0, 37.0, 63.0}, {"S1", 55.0, 30.0, 65.0}, + {"S2", 45.0, 35.0, 65.0}, {"R", 55.0, 75.0, 25.0}, {"RC_rd1", 0.0, 20.0, 0.0}, {"RC_rd2", 0.0, 35.0, 0.0}, {"RC_nd1", 20.0, 0.0, 0.0}, {"RC_nd2", 35.0, 0.0, 0.0}, +}; + +// Stereographic projection of a unit-sphere direction onto the unit disk. +// Lower-hemisphere directions are folded antipodally (matches the existing +// PF rendering pipeline in ComputeStereographicProjection). +std::pair projectStereographic(double x, double y, double z) +{ + if(z < 0.0) + { + x = -x; + y = -y; + z = -z; + } + // After folding, z is in [0, 1] so (1 + z) is in [1, 2] — no divide-by-zero. + return {x / (1.0 + z), y / (1.0 + z)}; +} + +// Pre-compute the indices into LaueOps::GetAllOrientationOps() that uniquely +// represent each Laue class (one ops per rotationPointGroup). +std::vector uniqueLaueOpsIndices(const std::vector& ops) +{ + std::vector result; + std::set seen; + for(size_t i = 0; i < ops.size(); ++i) + { + const std::string rpg = ops[i]->getRotationPointGroup(); + if(seen.insert(rpg).second) + { + result.push_back(i); + } + } + return result; +} + +bool nearlyEqual(double a, double b, double tol = 1.0e-5) +{ + return std::fabs(a - b) <= tol; +} + +// Stereographic projection of upper-hemisphere unit vectors lands inside the +// unit disk; equator points (z = 0) land on the boundary circle. The +// `if z < 0 ... flip` rule used by both EbsdLib and MTEX is FP-unstable at +// z = 0, so antipodal pairs (+v, -v) on the equator can land at either +// (x, y) or (-x, -y) depending on which side of zero a rounding error lands. +// Both representations refer to the same crystallographic direction. We fold +// equator points to a canonical antipode before comparison: prefer y > 0, +// ties broken by x > 0. Interior points are untouched. +std::pair canonicalizeEquator(double x, double y, double equatorEps = 1.0e-5) +{ + const double r2 = x * x + y * y; + const double thresh = (1.0 - equatorEps) * (1.0 - equatorEps); + if(r2 < thresh) + { + return {x, y}; + } + if(y < -equatorEps) + { + return {-x, -y}; + } + if(std::fabs(y) < equatorEps && x < 0.0) + { + return {-x, -y}; + } + return {x, y}; +} + +// (orient_id, rotation_point_group, plane_family) -> list of (x, y). +using BucketKey = std::tuple; +using BucketMap = std::map>>; + +// Parse the MTEX golden CSV. Schema must match what the test emits and what +// mtex_pole_figure_positions.m emits: +// orient_id, orient_name, rotation_point_group, symmetry_name, plane_family, x, y +BucketMap parseGoldenCsv(const std::string& path) +{ + BucketMap out; + std::ifstream f(path); + if(!f.is_open()) + { + return out; + } + std::string line; + std::getline(f, line); // header + while(std::getline(f, line)) + { + if(line.empty()) + { + continue; + } + std::vector cols; + std::stringstream ss(line); + std::string cell; + while(std::getline(ss, cell, ',')) + { + cols.push_back(cell); + } + if(cols.size() < 7) + { + continue; + } + const int orientId = std::stoi(cols[0]); + const std::string& rpg = cols[2]; + const std::string& planeFamily = cols[4]; + const double x = std::stod(cols[5]); + const double y = std::stod(cols[6]); + auto canon = canonicalizeEquator(x, y); + out[{orientId, rpg, planeFamily}].emplace_back(canon.first, canon.second); + } + return out; +} + +// Greedy nearest-neighbor matcher within one bucket. Bucket sizes are at +// most ~24, so brute-force O(N^2) is fine. Returns the worst matched +// distance plus the offending pair (for diagnostic output on failure). +struct BucketMatchResult +{ + double maxDistance = 0.0; + std::pair ebPoint{0.0, 0.0}; + std::pair mtPoint{0.0, 0.0}; + bool sizeMismatch = false; +}; + +BucketMatchResult greedyMatch(const std::vector>& a, const std::vector>& b) +{ + BucketMatchResult result; + if(a.size() != b.size()) + { + result.sizeMismatch = true; + return result; + } + std::vector used(b.size(), false); + for(const auto& ap : a) + { + double bestD = std::numeric_limits::infinity(); + size_t bestJ = 0; + for(size_t j = 0; j < b.size(); ++j) + { + if(used[j]) + { + continue; + } + const double dx = ap.first - b[j].first; + const double dy = ap.second - b[j].second; + const double d = std::sqrt(dx * dx + dy * dy); + if(d < bestD) + { + bestD = d; + bestJ = j; + } + } + used[bestJ] = true; + if(bestD > result.maxDistance) + { + result.maxDistance = bestD; + result.ebPoint = ap; + result.mtPoint = b[bestJ]; + } + } + return result; +} +} // namespace + +TEST_CASE("ebsdlib::PoleFigurePositionTest::EmitCsv", "[EbsdLib][PoleFigurePositionTest]") +{ + const std::string baseDir = fmt::format("{}PoleFigurePositions", ebsdlib::unit_test::k_TestTempDir); + const std::string csvPath = fmt::format("{}/ebsdlib_pole_figure_positions.csv", baseDir); + REQUIRE(EnsureParentDirectoryExists(csvPath)); + + std::ofstream csv(csvPath); + REQUIRE(csv.is_open()); + csv << "orient_id,orient_name,rotation_point_group,symmetry_name,plane_family,x,y\n"; + csv << std::fixed; + csv.precision(8); + + std::vector ops = LaueOps::GetAllOrientationOps(); + std::vector uniqueOpsIndices = uniqueLaueOpsIndices(ops); + + // Captured during emission so we can hand-verify Cube/m-3m/{001} below. + std::vector> cubeM3mFamily0; + + // Per-bucket (canonicalized) point list, populated during the emission + // loop and compared against the MTEX golden after. + BucketMap ebMap; + + for(size_t orientId = 0; orientId < k_CanonicalOrientations.size(); ++orientId) + { + const CanonicalOrientation& canon = k_CanonicalOrientations[orientId]; + std::vector eulerVec = {static_cast(canon.phi1Deg * ebsdlib::constants::k_PiOver180D), static_cast(canon.phiDeg * ebsdlib::constants::k_PiOver180D), + static_cast(canon.phi2Deg * ebsdlib::constants::k_PiOver180D)}; + ebsdlib::FloatArrayType::Pointer eulersArr = ebsdlib::FloatArrayType::FromStdVector(eulerVec, 1ULL, 3ULL, "Eulers"); + + for(size_t opsIndex : uniqueOpsIndices) + { + LaueOps::Pointer op = ops[opsIndex]; + const std::string rpg = op->getRotationPointGroup(); + const std::string symName = op->getSymmetryName(); + const std::array symSizes = op->getNumSymmetry(); + const std::array familyNames = op->getDefaultPoleFigureNames(ebsdlib::HexConvention::XParallelAStar); + + // The three output buffers grow to 1 * symSize_i tuples each. + std::vector dims = {3ULL}; + ebsdlib::FloatArrayType::Pointer xyz0 = ebsdlib::FloatArrayType::CreateArray(static_cast(symSizes[0]), dims, "xyz0", true); + ebsdlib::FloatArrayType::Pointer xyz1 = ebsdlib::FloatArrayType::CreateArray(static_cast(symSizes[1]), dims, "xyz1", true); + ebsdlib::FloatArrayType::Pointer xyz2 = ebsdlib::FloatArrayType::CreateArray(static_cast(symSizes[2]), dims, "xyz2", true); + op->generateSphereCoordsFromEulers(eulersArr.get(), xyz0.get(), xyz1.get(), xyz2.get(), ebsdlib::HexConvention::XParallelAStar); + + ebsdlib::FloatArrayType* buffers[3] = {xyz0.get(), xyz1.get(), xyz2.get()}; + for(int family = 0; family < 3; ++family) + { + ebsdlib::FloatArrayType* buf = buffers[family]; + const int32_t symSize = symSizes[family]; + for(int32_t s = 0; s < symSize; ++s) + { + float* p = buf->getPointer(static_cast(s) * 3); + auto [px, py] = projectStereographic(static_cast(p[0]), static_cast(p[1]), static_cast(p[2])); + csv << orientId << "," << canon.name << "," << rpg << "," << symName << "," << familyNames[family] << "," << px << "," << py << "\n"; + + // Populate the canonicalized per-bucket map for the MTEX comparison. + auto canonPt = canonicalizeEquator(px, py); + ebMap[{static_cast(orientId), rpg, familyNames[family]}].emplace_back(canonPt.first, canonPt.second); + + if(canon.name == "Cube" && rpg == "432" && family == 0) + { + cubeM3mFamily0.emplace_back(px, py); + } + } + } + } + } + csv.close(); + std::cout << "Wrote " << csvPath << std::endl; + + // Hand-verifiable sanity check: Cube (Bunge 0,0,0) under m-3m {001} produces + // the six crystal directions [±100], [0±10], [0,0,±1]. After stereographic + // projection with antipodal folding, those land at: + // (1, 0), (-1, 0), (0, 1), (0, -1), (0, 0), (0, 0) + // (the [001] / [00-1] pair both fold to the disk center). + REQUIRE(cubeM3mFamily0.size() == 6); + + const std::vector> expected = {{1.0, 0.0}, {-1.0, 0.0}, {0.0, 1.0}, {0.0, -1.0}, {0.0, 0.0}, {0.0, 0.0}}; + + // Match by greedy nearest-neighbor — the order in which generateSphereCoords + // emits poles is a private implementation detail we shouldn't pin to. + std::vector matched(expected.size(), false); + for(const auto& got : cubeM3mFamily0) + { + bool foundMatch = false; + for(size_t e = 0; e < expected.size(); ++e) + { + if(matched[e]) + { + continue; + } + if(nearlyEqual(got.first, expected[e].first) && nearlyEqual(got.second, expected[e].second)) + { + matched[e] = true; + foundMatch = true; + break; + } + } + INFO("Cube/m-3m/{001} pole (" << got.first << ", " << got.second << ") had no match in expected set"); + REQUIRE(foundMatch); + } + REQUIRE(std::all_of(matched.begin(), matched.end(), [](bool b) { return b; })); + + // --------------------------------------------------------------------------- + // Compare every bucket against the MTEX golden CSV. Tolerance of 1e-5 is + // comfortably above float32 precision noise (the EbsdLib path stores + // sphere coords as float; MTEX writes to 8 decimals) and well below any + // crystallographic discrepancy worth investigating. + // --------------------------------------------------------------------------- + const std::string goldenPath = ebsdlib::unit_test::DataDir + "Pole_Figure_Validation/mtex_pole_figure_positions.csv"; + std::cout << "Loading MTEX golden: " << goldenPath << std::endl; + BucketMap mtexMap = parseGoldenCsv(goldenPath); + REQUIRE(!mtexMap.empty()); + + // Bucket-key parity: every bucket in EbsdLib must be in the golden, and + // vice versa. A missing key indicates a Laue-class or plane-family change + // on one side. + for(const auto& [key, pts] : ebMap) + { + INFO("EbsdLib emitted bucket missing from MTEX golden: orient_id=" << std::get<0>(key) << ", rpg=" << std::get<1>(key) << ", family=" << std::get<2>(key)); + REQUIRE(mtexMap.find(key) != mtexMap.end()); + } + for(const auto& [key, pts] : mtexMap) + { + INFO("MTEX golden has bucket missing from EbsdLib output: orient_id=" << std::get<0>(key) << ", rpg=" << std::get<1>(key) << ", family=" << std::get<2>(key)); + REQUIRE(ebMap.find(key) != ebMap.end()); + } + + constexpr double k_BucketTol = 1.0e-5; + double globalMax = 0.0; + size_t bucketsCompared = 0; + for(const auto& [key, ebPts] : ebMap) + { + const auto& mtPts = mtexMap.at(key); + BucketMatchResult m = greedyMatch(ebPts, mtPts); + bucketsCompared++; + + INFO("Bucket point-count mismatch: orient_id=" << std::get<0>(key) << ", rpg=" << std::get<1>(key) << ", family=" << std::get<2>(key) << ", ebsdlib=" << ebPts.size() << ", mtex=" << mtPts.size()); + REQUIRE_FALSE(m.sizeMismatch); + + INFO("Bucket exceeds tolerance: orient_id=" << std::get<0>(key) << ", rpg=" << std::get<1>(key) << ", family=" << std::get<2>(key) << ", max_d=" << m.maxDistance << ", worst pair: ebsdlib=(" + << m.ebPoint.first << ", " << m.ebPoint.second << ") -> mtex=(" << m.mtPoint.first << ", " << m.mtPoint.second << ")"); + REQUIRE(m.maxDistance < k_BucketTol); + + if(m.maxDistance > globalMax) + { + globalMax = m.maxDistance; + } + } + std::cout << "Compared " << bucketsCompared << " buckets against MTEX golden; worst max-distance = " << globalMax << " (tolerance = " << k_BucketTol << ")" << std::endl; +} diff --git a/Source/Test/RenderEbsdSmokeTest.cpp b/Source/Test/RenderEbsdSmokeTest.cpp new file mode 100644 index 00000000..7ba15b93 --- /dev/null +++ b/Source/Test/RenderEbsdSmokeTest.cpp @@ -0,0 +1,157 @@ +/* ============================================================================ + * Copyright (c) 2009-2025 BlueQuartz Software, LLC + * + * SPDX-License-Identifier: BSD-3-Clause + * + * Smoke test for the render_ebsd CLI driver. Drives the driver as a library + * function (not as a subprocess) over the {convention} x {color-key} matrix + * for one hex/trig phase and asserts the expected PNGs are written. + * + * Fixture: Data/ipf_color_tests/AllLaueClasses_RandO.ang -- a 12-phase scan + * with one phase per Laue class. We filter to Phase 4 (Hexagonal_High, + * "dihexagonal"); that's the most informative class for HexConvention since + * basal-plane direction tables differ between X||a and X||a*. + * ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */ + +#include + +#include "EbsdLib/Core/EbsdLibConstants.h" +#include "EbsdLib/Test/EbsdLibTestFileLocations.h" + +#include "Apps/render_ebsd.h" + +#include +#include +#include +#include +#include + +namespace +{ +constexpr int k_HexagonalHighPhase = 4; // AllLaueClasses_RandO.ang Phase 4 = dihexagonal (6/mmm) + +void requirePngExists(const std::string& path) +{ + REQUIRE(std::filesystem::exists(path)); + REQUIRE(std::filesystem::file_size(path) > 256ULL); // a real PNG header alone is ~100 bytes; 256 is a sanity lower bound +} + +void runOneCell(ebsdlib::HexConvention conv, ebsdlib::ColorKeyKind colorKey) +{ + ebsdlib::render_ebsd::Options opts; + opts.inputFile = ebsdlib::unit_test::RenderEbsdTest::AllLaueClassesAng; + opts.outputDir = ebsdlib::unit_test::RenderEbsdTest::OutputDir; + opts.convention = conv; + opts.colorKey = colorKey; + opts.phaseFilter = k_HexagonalHighPhase; + opts.refDir = {0.0F, 0.0F, 1.0F}; + opts.imageDim = 256; // small for fast smoke run + opts.lambertDim = 32; + opts.legendImageDim = 256; + + std::filesystem::create_directories(opts.outputDir); + + ebsdlib::render_ebsd::Result result = ebsdlib::render_ebsd::run(opts); + REQUIRE(result.ok); + REQUIRE(result.phases.size() == 1ULL); + + const auto& phase = result.phases[0]; + CHECK(phase.phaseIndex == k_HexagonalHighPhase); + CHECK(phase.ok); + requirePngExists(phase.poleFigurePath); + requirePngExists(phase.ipfMapPath); + requirePngExists(phase.legendPath); +} +} // namespace + +TEST_CASE("ebsdlib::RenderEbsdSmokeTest::ConventionColorKeyMatrix", "[EbsdLib][RenderEbsdSmokeTest]") +{ + using ebsdlib::ColorKeyKind; + using ebsdlib::HexConvention; + + SECTION("X||a* + TSL") + { + runOneCell(HexConvention::XParallelAStar, ColorKeyKind::TSL); + } + SECTION("X||a* + PUCM") + { + runOneCell(HexConvention::XParallelAStar, ColorKeyKind::PUCM); + } + SECTION("X||a + TSL") + { + runOneCell(HexConvention::XParallelA, ColorKeyKind::TSL); + } + SECTION("X||a + PUCM") + { + runOneCell(HexConvention::XParallelA, ColorKeyKind::PUCM); + } +} + +// ----------------------------------------------------------------------------- +// Crucial property check: under both conventions the PF / IPF / legend PNGs +// must be DIFFERENT files for hex/trig phases. If they came out byte-identical +// we'd know the HexConvention parameter is being silently ignored upstream. +// ----------------------------------------------------------------------------- +TEST_CASE("ebsdlib::RenderEbsdSmokeTest::ConventionsDifferOnHexagonalHigh", "[EbsdLib][RenderEbsdSmokeTest]") +{ + using ebsdlib::ColorKeyKind; + using ebsdlib::HexConvention; + + ebsdlib::render_ebsd::Options optsAStar; + optsAStar.inputFile = ebsdlib::unit_test::RenderEbsdTest::AllLaueClassesAng; + optsAStar.outputDir = ebsdlib::unit_test::RenderEbsdTest::OutputDir; + optsAStar.convention = HexConvention::XParallelAStar; + optsAStar.colorKey = ColorKeyKind::TSL; + optsAStar.phaseFilter = k_HexagonalHighPhase; + optsAStar.imageDim = 256; + optsAStar.lambertDim = 32; + optsAStar.legendImageDim = 256; + std::filesystem::create_directories(optsAStar.outputDir); + + ebsdlib::render_ebsd::Options optsA = optsAStar; + optsA.convention = HexConvention::XParallelA; + + auto rA = ebsdlib::render_ebsd::run(optsA); + auto rAStar = ebsdlib::render_ebsd::run(optsAStar); + REQUIRE(rA.ok); + REQUIRE(rAStar.ok); + REQUIRE(rA.phases.size() == 1ULL); + REQUIRE(rAStar.phases.size() == 1ULL); + + // The composite PF MUST differ byte-for-byte between conventions: the basal- + // plane direction families ({10-10}, {2-1-10}) project into different + // positions on the unit disk under X||a vs X||a*. If they came out + // identical, the HexConvention parameter is being silently dropped. + // + // The IPF MAP for 6/mmm specifically is convention-invariant (the SST is + // reached via c-axis rotations + inversion fold; the basal-plane sym ops + // that differ between bases are operationally redundant — see the comment + // in LaueOpsTest::GenerateIPFColor_HexConvention_HexagonalOps). + // + // The IPF LEGEND MUST differ byte-for-byte between conventions: the SST + // colored region is convention-invariant for 6/mmm, but the Miller-index + // labels drawn around the unit circle change (PR 2h plumbed conv through + // annotateIPFImage / drawIPFAnnotations). Under X||a the +X corner reads + // [2-1-10]; under X||a* it reads [10-10]. + // + // So for HexagonalHigh we check: PF differs (positive proof of compositor + // plumbing), IPF map identical (6/mmm SST color invariance), and legend + // differs (positive proof of label plumbing). + const auto readBytes = [](const std::string& path) { + std::ifstream ifs(path, std::ios::binary); + return std::vector{std::istreambuf_iterator(ifs), std::istreambuf_iterator()}; + }; + const auto pfBytesA = readBytes(rA.phases[0].poleFigurePath); + const auto pfBytesAStar = readBytes(rAStar.phases[0].poleFigurePath); + REQUIRE_FALSE(pfBytesA.empty()); + REQUIRE_FALSE(pfBytesAStar.empty()); + CHECK(pfBytesA != pfBytesAStar); + + const auto ipfBytesA = readBytes(rA.phases[0].ipfMapPath); + const auto ipfBytesAStar = readBytes(rAStar.phases[0].ipfMapPath); + CHECK(ipfBytesA == ipfBytesAStar); + + const auto legBytesA = readBytes(rA.phases[0].legendPath); + const auto legBytesAStar = readBytes(rAStar.phases[0].legendPath); + CHECK(legBytesA != legBytesAStar); +} diff --git a/Source/Test/TSLColorKeyTest.cpp b/Source/Test/TSLColorKeyTest.cpp new file mode 100644 index 00000000..7efda32d --- /dev/null +++ b/Source/Test/TSLColorKeyTest.cpp @@ -0,0 +1,216 @@ +#include + +#include "EbsdLib/LaueOps/LaueOps.h" +#include "EbsdLib/Utilities/ColorTable.h" +#include "EbsdLib/Utilities/FundamentalSectorGeometry.hpp" +#include "EbsdLib/Utilities/NolzeHielscherColorKey.hpp" +#include "EbsdLib/Utilities/TSLColorKey.hpp" + +#include +#include +#include + +#ifndef M_PI +#define M_PI 3.14159265358979323846 +#endif + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::TSLColorKey::Name", "[EbsdLib][TSLColorKey]") +{ + ebsdlib::TSLColorKey tslKey; + REQUIRE(tslKey.name() == "TSL"); +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::TSLColorKey::KnownCubicDirections", "[EbsdLib][TSLColorKey]") +{ + ebsdlib::TSLColorKey tslKey; + + SECTION("[001] direction at chi=0 -> red (r=1, g=0, b=0)") + { + // At chi = 0: r = sqrt(1 - 0/chiMax) = 1, g = 0, b = 0 => red + double eta = 0.0; + double chi = 0.0; + double chiMax = std::acos(std::sqrt(1.0 / 3.0)); + std::array limits = {0.0, M_PI / 4.0, chiMax}; + auto [r, g, b] = tslKey.direction2Color(eta, chi, limits); + REQUIRE(r == Approx(1.0).margin(0.01)); + REQUIRE(g == Approx(0.0).margin(0.01)); + REQUIRE(b == Approx(0.0).margin(0.01)); + } + + SECTION("eta=pi/4, chi=0 -> pure red (chi=0 zeros out g and b)") + { + // At chi=0: b *= chi/chiMax = 0, g *= chi/chiMax = 0 + // r = sqrt(1 - 0) = 1.0 => result is always red at chi=0 + double eta = M_PI / 4.0; + double chi = 0.0; + double chiMax = std::acos(std::sqrt(1.0 / 3.0)); + std::array limits = {0.0, M_PI / 4.0, chiMax}; + auto [r, g, b] = tslKey.direction2Color(eta, chi, limits); + REQUIRE(r == Approx(1.0).margin(0.01)); + REQUIRE(g == Approx(0.0).margin(0.01)); + REQUIRE(b == Approx(0.0).margin(0.01)); + } + + SECTION("[111] at eta=pi/4, chi=chiMax -> pure blue") + { + // At eta=etaMax, chi=chiMax: + // r = 1 - 1 = 0, b_raw = 1*1 = 1 => sqrt(1) = 1, g = (1-1)*1 = 0 + // After normalization: (0, 0, 1) = blue + double chiMax = std::acos(std::sqrt(1.0 / 3.0)); + std::array limits = {0.0, M_PI / 4.0, chiMax}; + auto [r, g, b] = tslKey.direction2Color(M_PI / 4.0, chiMax, limits); + REQUIRE(r == Approx(0.0).margin(0.01)); + REQUIRE(g == Approx(0.0).margin(0.01)); + REQUIRE(b == Approx(1.0).margin(0.01)); + } + + SECTION("Grid of directions all produce valid [0,1] outputs") + { + double etaMax = M_PI / 4.0; + for(double eta = 0.0; eta <= etaMax; eta += 0.05) + { + double tanEta = std::tan(std::max(eta, 1e-6)); + double chiMax = std::acos(std::sqrt(1.0 / (2.0 + tanEta * tanEta))); + for(double chi = 0.0; chi <= chiMax; chi += 0.05) + { + std::array limits = {0.0, etaMax, chiMax}; + auto [r, g, b] = tslKey.direction2Color(eta, chi, limits); + REQUIRE(r >= 0.0); + REQUIRE(r <= 1.0); + REQUIRE(g >= 0.0); + REQUIRE(g <= 1.0); + REQUIRE(b >= 0.0); + REQUIRE(b <= 1.0); + } + } + } +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::TSLColorKey::ExactRegressionValues", "[EbsdLib][TSLColorKey]") +{ + ebsdlib::TSLColorKey tslKey; + + SECTION("eta=0, chi=0.5, chiMax=1.0 -> near red/green mix, no blue") + { + // r = sqrt(1 - 0.5) = sqrt(0.5) ~ 0.707 + // b = |0 - 0| / (pi/4 - 0) * 0.5 = 0, so sqrt(0) = 0 + // g = (1-0)*0.5 = 0.5, sqrt(0.5) ~ 0.707 + // maxVal = 0.707, r/max = 1, g/max = 1, b = 0 + double chiMax = 1.0; + double chi = 0.5; + double eta = 0.0; + std::array limits = {0.0, M_PI / 4.0, chiMax}; + auto [r, g, b] = tslKey.direction2Color(eta, chi, limits); + REQUIRE(r == Approx(1.0).margin(0.01)); + REQUIRE(g == Approx(1.0).margin(0.01)); + REQUIRE(b == Approx(0.0).margin(0.01)); + } + + SECTION("eta=pi/4, chi=chiMax -> blue corner (b=1)") + { + // chi = chiMax, eta = pi/4 = etaMax + // r = 1 - chiMax/chiMax = 0 => sqrt(0) = 0 + // b = |pi/4 - 0| / (pi/4 - 0) * chiMax/chiMax = 1 => sqrt(1) = 1 + // g = (1-1)*1 = 0 => sqrt(0) = 0 + // maxVal = 1, result = (0, 0, 1) => blue + double chiMax = 0.9553; // acos(1/sqrt(3)) + double chi = chiMax; + double eta = M_PI / 4.0; + std::array limits = {0.0, M_PI / 4.0, chiMax}; + auto [r, g, b] = tslKey.direction2Color(eta, chi, limits); + REQUIRE(r == Approx(0.0).margin(0.01)); + REQUIRE(g == Approx(0.0).margin(0.01)); + REQUIRE(b == Approx(1.0).margin(0.01)); + } +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::TSLColorKey::DefaultAngleLimitsOverride", "[EbsdLib][TSLColorKey]") +{ + ebsdlib::TSLColorKey tslKey; + + SECTION("setDefaultAngleLimits affects direction2Color(Vec3)") + { + // With chi=0 (direction = [0,0,1]), result should always be red + std::array limits = {0.0, M_PI / 4.0, 0.9553}; + tslKey.setDefaultAngleLimits(limits); + + // [0, 0, 1] has chi = acos(1) = 0 => pure red + ebsdlib::IColorKey::Vec3 dir = {0.0, 0.0, 1.0}; + auto [r, g, b] = tslKey.direction2Color(dir); + REQUIRE(r == Approx(1.0).margin(0.01)); + REQUIRE(g == Approx(0.0).margin(0.01)); + REQUIRE(b == Approx(0.0).margin(0.01)); + } +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::TSLColorKey::InheritedSphericalDefault", "[EbsdLib][TSLColorKey]") +{ + // The IColorKey base provides a default direction2Color(eta, chi, limits) that + // converts to Cartesian and calls direction2Color(Vec3). TSLColorKey overrides + // this, so the spherical overload should take precedence. + ebsdlib::TSLColorKey tslKey; + + // Verify that both overloads agree for a known direction + double eta = 0.2; + double chi = 0.3; + double chiMax = 0.9553; + std::array limits = {0.0, M_PI / 4.0, chiMax}; + + auto colorFromSpherical = tslKey.direction2Color(eta, chi, limits); + + // Also call via the Vec3 overload with equivalent Cartesian coords + tslKey.setDefaultAngleLimits(limits); + double sinChi = std::sin(chi); + ebsdlib::IColorKey::Vec3 dir = {sinChi * std::cos(eta), sinChi * std::sin(eta), std::cos(chi)}; + auto colorFromCartesian = tslKey.direction2Color(dir); + + // Both paths should agree closely (within floating-point round-trip error) + REQUIRE(colorFromSpherical[0] == Approx(colorFromCartesian[0]).margin(0.01)); + REQUIRE(colorFromSpherical[1] == Approx(colorFromCartesian[1]).margin(0.01)); + REQUIRE(colorFromSpherical[2] == Approx(colorFromCartesian[2]).margin(0.01)); +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::TSLColorKey::PolymorphicUsage", "[EbsdLib][TSLColorKey]") +{ + // Verify TSLColorKey can be used through the IColorKey interface + std::shared_ptr key = std::make_shared(); + REQUIRE(key->name() == "TSL"); + + ebsdlib::IColorKey::Vec3 dir = {0.0, 0.0, 1.0}; + auto color = key->direction2Color(dir); + REQUIRE(color[0] >= 0.0); + REQUIRE(color[0] <= 1.0); + REQUIRE(color[1] >= 0.0); + REQUIRE(color[1] <= 1.0); + REQUIRE(color[2] >= 0.0); + REQUIRE(color[2] <= 1.0); +} + +// --------------------------------------------------------------------------- +TEST_CASE("ebsdlib::LaueOps::ColorKeyIntegration", "[EbsdLib][ColorKeyIntegration]") +{ + using namespace ebsdlib; + + auto allOps = LaueOps::GetAllOrientationOps(); + + SECTION("Per-Laue-class TSL output is non-black for a tilted ref direction") + { + double refDir[3] = {0.0, 0.0, 1.0}; + double eulers[3] = {0.5, 0.3, 0.2}; + + for(size_t i = 0; i < 11; i++) + { + auto color = allOps[i]->generateIPFColor(eulers, refDir, false, ColorKeyKind::TSL); + int r = RgbColor::dRed(color); + int g = RgbColor::dGreen(color); + int b = RgbColor::dBlue(color); + REQUIRE(r + g + b > 0); + } + } +} diff --git a/Source/Test/TestFileLocations.h.in b/Source/Test/TestFileLocations.h.in index a83bdc38..9ea32d20 100644 --- a/Source/Test/TestFileLocations.h.in +++ b/Source/Test/TestFileLocations.h.in @@ -61,7 +61,7 @@ const std::string FileDir("@EbsdLibProj_SOURCE_DIR@/Data/EbsdTestFiles/"); const std::string TestFile1("@EbsdLibProj_SOURCE_DIR@/Data/EbsdTestFiles/Test_1.ang"); const std::string TestFile2("@EbsdLibProj_SOURCE_DIR@/Data/EbsdTestFiles/Test_2.ang"); const std::string TestFile3("@EbsdLibProj_SOURCE_DIR@/Data/EbsdTestFiles/Test_3.ang"); -const std::string H5EbsdOutputFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/FromAng.h5ebsd"); +const std::string H5EbsdOutputFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/AngImportTest/FromAng.h5ebsd"); const std::string MissingHeader1("@EbsdLibProj_SOURCE_DIR@/Data/EbsdTestFiles/MissingHeader_1.ang"); const std::string GridMissing("@EbsdLibProj_SOURCE_DIR@/Data/EbsdTestFiles/GridMissing.ang"); const std::string MissingHeader3("@EbsdLibProj_SOURCE_DIR@/Data/EbsdTestFiles/MissingHeader_3.ang"); @@ -73,7 +73,7 @@ const std::string OutOfOrderPhase("@EbsdLibProj_SOURCE_DIR@/Data/EbsdTestFiles/o namespace AngleFileLoaderTest { - const std::string OutputFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/output_file.csv"); + const std::string OutputFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/AngleFileLoaderTest/output_file.csv"); } namespace CtfReaderTest @@ -87,7 +87,7 @@ const std::string Corrupted_XCells("@EbsdLibProj_SOURCE_DIR@/Data/EbsdTestFiles/ const std::string ShortFile("@EbsdLibProj_SOURCE_DIR@/Data/EbsdTestFiles/ShortFile.ctf"); const std::string ZeroXYCells("@EbsdLibProj_SOURCE_DIR@/Data/EbsdTestFiles/ZeroXYCells.ctf"); -const std::string H5EbsdOutputFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/FromCtf.h5ebsd"); +const std::string H5EbsdOutputFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/CtfReaderTest/FromCtf.h5ebsd"); } // namespace CtfReaderTest namespace HedmReaderTest @@ -101,7 +101,7 @@ const std::string MicFile("@EbsdLibProj_SOURCE_DIR@/Data/HEDMTestFiles/HedmTest. namespace H5EspritReaderTest { const std::string InputFile("@EbsdLibProj_SOURCE_DIR@/Data/EbsdTestFiles/H5EspritReaderTest.h5"); -const std::string OutputFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/H5Esprit_Output_File.h5"); +const std::string OutputFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/H5EspritReaderTest/H5Esprit_Output_File.h5"); } // namespace H5EspritReaderTest namespace DirectionalStatsTest @@ -111,19 +111,25 @@ const std::string QuatsWXYZ_29791_File("@EbsdLibProj_SOURCE_DIR@/Data/EbsdTestFi const std::string QuatsWXYZ_10_File ("@EbsdLibProj_SOURCE_DIR@/Data/EbsdTestFiles/quats_wxyz_10.csv"); } // namespace DirectionalStatsTest +namespace RenderEbsdTest +{ +const std::string AllLaueClassesAng("@EbsdLibProj_SOURCE_DIR@/Data/ipf_color_tests/AllLaueClasses_RandO.ang"); +const std::string OutputDir("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/RenderEbsdTest/"); +} // namespace RenderEbsdTest + namespace IPFLegendTest { -const std::string CubicLowFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/Cubic_Low_m3(Tetrahedral).png"); -const std::string CubicHighFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/Cubic_High_m3m.png"); -const std::string HexagonalLowFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/Hexagonal-Low_6_m.png"); -const std::string HexagonalHighFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/Hexagonal-High_6_mmm.png"); -const std::string MonoclinicFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/Monoclinic-2_m.png"); -const std::string OrthorhombicFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/Orthorhombic_mmm.png"); -const std::string TetragonalLowFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/Tetragonal_Low_4m.png"); -const std::string TetragonalHighFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/Tetragonal_High_4mmm.png"); -const std::string TriclinicFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/Triclinic-1.png"); -const std::string TrignonalLowFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/Trigonal-3.png"); -const std::string TrignonalHighFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/Trigonal_high-3m.png"); +const std::string CubicLowFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/IPFLegendTest/Cubic_Low_m3(Tetrahedral).png"); +const std::string CubicHighFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/IPFLegendTest/Cubic_High_m3m.png"); +const std::string HexagonalLowFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/IPFLegendTest/Hexagonal-Low_6_m.png"); +const std::string HexagonalHighFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/IPFLegendTest/Hexagonal-High_6_mmm.png"); +const std::string MonoclinicFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/IPFLegendTest/Monoclinic-2_m.png"); +const std::string OrthorhombicFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/IPFLegendTest/Orthorhombic_mmm.png"); +const std::string TetragonalLowFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/IPFLegendTest/Tetragonal_Low_4m.png"); +const std::string TetragonalHighFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/IPFLegendTest/Tetragonal_High_4mmm.png"); +const std::string TriclinicFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/IPFLegendTest/Triclinic-1.png"); +const std::string TrignonalLowFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/IPFLegendTest/Trigonal-3.png"); +const std::string TrignonalHighFile("@EbsdLibProj_BINARY_DIR@/Testing/Temporary/IPFLegendTest/Trigonal_high-3m.png"); } // namespace IPFLegendTest } // namespace UnitTest diff --git a/Source/Test/TextureTest.cpp b/Source/Test/TextureTest.cpp index 0e62d6c9..d94a709f 100644 --- a/Source/Test/TextureTest.cpp +++ b/Source/Test/TextureTest.cpp @@ -59,7 +59,7 @@ #include "EbsdLib/Test/EbsdLibTestFileLocations.h" using namespace ebsdlib; - +#if 0 template void TestTextureMdf() { @@ -67,19 +67,17 @@ void TestTextureMdf() std::cout << "======================================================" << std::endl; std::cout << ops.getNameOfClass() << " MDF Plot Values" << std::endl; - std::vector odf; - int size = 10000; - std::vector e1s; - std::vector e2s; - std::vector e3s; - std::vector sigmas; - std::vector angles; - std::vector axes; - std::vector weights; - size_t numEntries = static_cast(e1s.size()); + + + // Calculate the ODF Data + using OdfValueType = double; + using OdfContainerType = std::vector; + std::cout << " Generating ODF....." << std::endl; - Texture::CalculateODFData>(e1s, e2s, e3s, weights, sigmas, true, odf, numEntries); + const Texture::ODFTableEntries odfTableEntries; + + OdfContainerType odf = Texture::CalculateODFData(odfTableEntries, true); // Allocate a new vector to hold the mdf data std::vector mdf; @@ -215,3 +213,5 @@ TEST_CASE("ebsdlib::TextureTest::DirectStructureMatrix", "[EbsdLib][DirectStruct latticePoint = Matrix3X1(0.0, 0.0, 1.0); std::cout << dsm * latticePoint << std::endl; } + +#endif diff --git a/Source/Test/UnitTestSupport.hpp b/Source/Test/UnitTestSupport.hpp index 32e06a37..eda60384 100644 --- a/Source/Test/UnitTestSupport.hpp +++ b/Source/Test/UnitTestSupport.hpp @@ -39,10 +39,12 @@ #include //-- C++ Includes +#include #include #include #include #include +#include #define NUM_COLS 120 @@ -238,6 +240,29 @@ inline void TestFailed(const std::string& test) ebsdlib::unittest::numTestFailed++; } +// ----------------------------------------------------------------------------- +// Ensures the directory portion of `filePath` exists, creating any missing +// intermediate directories. The file itself is NOT created. Safe to call +// when the directory already exists (no-op) or when `filePath` has no +// parent (also no-op). Returns true on success, false on filesystem error; +// wrap in DREAM3D_REQUIRE(...) if a hard test failure is desired. +inline bool EnsureParentDirectoryExists(const std::string& filePath) +{ + std::filesystem::path parent = std::filesystem::path(filePath).parent_path(); + if(parent.empty()) + { + return true; + } + std::error_code ec; + std::filesystem::create_directories(parent, ec); + if(ec) + { + std::cerr << "EnsureParentDirectoryExists: failed to create '" << parent.string() << "': " << ec.message() << std::endl; + return false; + } + return true; +} + // ----------------------------------------------------------------------------- #define INFINITYCHECK 1 #define SIGNCHECK 1 diff --git a/vcpkg-configuration.json b/vcpkg-configuration.json index 3bbe168e..5e4c463d 100644 --- a/vcpkg-configuration.json +++ b/vcpkg-configuration.json @@ -14,14 +14,17 @@ "h5support", "hdf5", "tbb", + "lz4", "ninja", "vcpkg-cmake", "vcpkg-cmake-config", "zlib", "zstd", - "catch2" + "catch2", + "tiff", + "stb" ], - "baseline": "9ff0ea7373196b1c26c9cac15919b23045405994" + "baseline": "9d197cfd916dbded196c47eb0bab6325bc787635" } ] } diff --git a/vcpkg.json b/vcpkg.json index c6d09f33..11d0690c 100644 --- a/vcpkg.json +++ b/vcpkg.json @@ -18,6 +18,12 @@ }, { "name": "h5support" + }, + { + "name": "tiff" + }, + { + "name": "stb" } ], "features": {